Citrus Sinensis ID: 009517

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530---
Protein Sequence
MRRFVIGRGRNFLNRSHQQNLLSSSSSHCQSRFLSSTSVIDSPSSSSMAPTSSPAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKFRN
Secondary Structure (PSIPRED)
cHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccEEEccccccccccccccHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHccccccccccEEEccccHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHcccEEEEEEccccccccccHHHHHHHHHHHHHccccEEEEEEEcccccccccccHHHHHHHHHHHHHccEEEcccccccccccccccccccHHHHHcccccccccEEEEEEccccccccccccccEEEEEEEcccHHHHHHHHHHHHccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEccccccccHHHHHHHHHcccccHHHHHHHHHHHcccEEEcccccccccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHccccHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccEEEEEccccHHHcccccccHHHHHHHHHHcHHHccccHHHHHccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccccccHcHEEEccccHHHHHHHHHHHHcccccEEEEcccccccHHHHHHHccccEEEEEEcccccccccHHHHHHHHHHHHHcccccEEEEEEcccccccccccHHHHHHHHHHHHHcccEEEEEcEHHHHccccccccccHHHHHHHcccccccEEEEEEEEEccccccccccccEEEEEEcccHHHHHHHHHHHHcccccccccEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEccccccHEEEcccccccHHHHHHHHHcccccHHHHHHHHHHHcccEEEcccccccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mrrfvigrgrnflnrshqqnllssssshcqsrflsstsvidspssssmaptsspaitvdslnpkvlkceyavRGEIVSIAQRLQQElqtnpgshsfdeilycnignpqslgqqpITFFREVLalcdhpsildrsetqglfsaDSIERAWQILDqipgratgayshsqgiKGLRDTIAAGieardgfpadpndifltdgaspAVHMMMQLLIRsendgilcpipqyplysasialhggtlvpyyldeatgwgleTSEVKKQLEAAKAKGITVRALVVinpgnptgqvLAEENQRAIVDFCKKEGLVLLADEvyqenvyvpekkfhsfkkvsrsmgygekdisLVSFQSvskgyygecgkrggymevtgfSAEVREQIYKVASVNLCSNISGQILASLvmsppkvgdesyesYCAERDGILSSLARRAKTLEDAFNslegitcnkaegamylfpriqlpEKAIKAAEaektvpdafyCRRLLNATgivlvpgsgfgqvpgtwhfrctilpqedkipAIVTRLTDFHKNFMDKFRN
Flexible Loop (DISEMBL)
mrrfvigrgrnflnrshQQNLLSSSSSHCQSRFLSSTsvidspssssmaptsspaitvdslnpKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEArdgfpadpndIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYqenvyvpekkfhsfkkvsrsmgygekdislVSFQSVSKGyygecgkrggYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKFRN
Low Complexity Region (SEG)
MRRFVIGRGRNFlnrshqqnllssssshcqsrflsstsvidspssssmaptsspaitVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPekaikaaeaekTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKFRN
Disordered region (IsUnstruct)
**********************************************************DSLNPKVLKCEYAVRGEIVSIAQRLQQELQ****SHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNF******
Disordered Region (DISOPRED)
********G***************************************************LNPKVLKCEYAVRGEIVSIAQRLQ********SHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKF**
Disordered Region (DISEMBL)
MRRFVIGRGRNFLNRSHQ***********************************PAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKFRN
Disordered Region (DISPRO)
****VIG***********************************************AITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKFRN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRRFVIGRGRNFLNRSHQQNLLSSSSSHCQSRFLSSTSVIDSPSSSSMAPTSSPAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKFRN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	533	2.2.26 [Sep-21-2011]
Q9LDV4	540	Alanine aminotransferase	yes	no	0.990	0.977	0.792	0.0
F4I7I0	543	Alanine aminotransferase	no	no	0.992	0.974	0.764	0.0
P52894	482	Alanine aminotransferase	N/A	no	0.896	0.991	0.790	0.0
P34106	482	Alanine aminotransferase	N/A	no	0.896	0.991	0.799	0.0
Q9LR30	481	Glutamate--glyoxylate ami	no	no	0.879	0.975	0.518	1e-142
Q54MJ7	534	Probable alanine aminotra	yes	no	0.902	0.900	0.513	1e-142
Q9S7E9	481	Glutamate--glyoxylate ami	no	no	0.876	0.970	0.512	1e-140
P52893	592	Probable alanine aminotra	yes	no	0.883	0.795	0.476	1e-126
Q8BGT5	522	Alanine aminotransferase	yes	no	0.893	0.911	0.464	1e-126
Q8TD30	523	Alanine aminotransferase	yes	no	0.881	0.898	0.467	1e-125

>sp|Q9LDV4|ALAT2_ARATH Alanine aminotransferase 2, mitochondrial OS=Arabidopsis thaliana GN=ALAAT2 PE=2 SV=1

 Score =  906 bits (2341), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/545 (79%), Positives = 487/545 (89%), Gaps = 17/545 (3%)

Query: 1   MRRFVIGRGRNFLNRSHQQN------LLS------SSSSHCQSRFLSSTSVIDSPSSSSM 48
           MRRF+I + +  ++ S +Q+       LS      +SS    SRF SSTS + +  S+S 
Sbjct: 1   MRRFLINQAKGLVDHSRRQHHHKSPSFLSPQPRPLASSPPALSRFFSSTSEMSASDSTSS 60

Query: 49  APTSSPAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQ 108
            P     +T+DS+NPKVLKCEYAVRGEIV+IAQ+LQ++L+TN  ++ FDEI+YCNIGNPQ
Sbjct: 61  LP-----VTLDSINPKVLKCEYAVRGEIVNIAQKLQEDLKTNKDAYPFDEIIYCNIGNPQ 115

Query: 109 SLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQG 168
           SLGQ PI FFREVLALCDH S+LD SET GLFS DSI+RAW+ILD IPGRATGAYSHSQG
Sbjct: 116 SLGQLPIKFFREVLALCDHASLLDESETHGLFSTDSIDRAWRILDHIPGRATGAYSHSQG 175

Query: 169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLY 228
           IKGLRD IAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL+ SE DGIL PIPQYPLY
Sbjct: 176 IKGLRDVIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLLSSEKDGILSPIPQYPLY 235

Query: 229 SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLA 288
           SASIALHGG+LVPYYLDEATGWGLE S++KKQLE A++KGI+VRALVVINPGNPTGQVLA
Sbjct: 236 SASIALHGGSLVPYYLDEATGWGLEISDLKKQLEEARSKGISVRALVVINPGNPTGQVLA 295

Query: 289 EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSV 348
           EENQR IV+FCK+EGLVLLADEVYQENVYVP+KKFHSFKKV+RS+GYGEKDISLVSFQSV
Sbjct: 296 EENQRDIVNFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSLGYGEKDISLVSFQSV 355

Query: 349 SKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESY 408
           SKGYYGECGKRGGYMEVTGF+++VREQIYK+ASVNLCSNISGQILASLVMSPPK GD+SY
Sbjct: 356 SKGYYGECGKRGGYMEVTGFTSDVREQIYKMASVNLCSNISGQILASLVMSPPKPGDDSY 415

Query: 409 ESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEK 468
           +SY AERDGILSS+A+RAKTLEDA NSLEG+TCN+AEGAMYLFPRI LP+KAI+AAEAEK
Sbjct: 416 DSYMAERDGILSSMAKRAKTLEDALNSLEGVTCNRAEGAMYLFPRINLPQKAIEAAEAEK 475

Query: 469 TVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFM 528
           T PDAFYC+RLLNATG+V+VPGSGFGQVPGTWHFRCTILPQEDKIPAIV RLT+FHK+FM
Sbjct: 476 TAPDAFYCKRLLNATGVVVVPGSGFGQVPGTWHFRCTILPQEDKIPAIVNRLTEFHKSFM 535

Query: 529 DKFRN 533
           D+FRN
Sbjct: 536 DEFRN 540

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: -

>sp|F4I7I0|ALAT1_ARATH Alanine aminotransferase 1, mitochondrial OS=Arabidopsis thaliana GN=ALAAT1 PE=1 SV=1

 Score =  849 bits (2194), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/547 (76%), Positives = 476/547 (87%), Gaps = 18/547 (3%)

Query: 1   MRRFVIGRGRNFLNRSHQQNLLSSSSSHCQSRFLSSTSVIDSPSSSSMAPTSSPA----- 55
           MRRFVIG+ +N +++S ++ L      H    F+S      +PS SS    SS +     
Sbjct: 1   MRRFVIGQAKNLIDQSRRRQL----HHHKNLSFVSLIPPFSAPSDSSSRHLSSSSSSDMS 56

Query: 56  ---------ITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGN 106
                    +T+D++NPKV+KCEYAVRGEIV+IAQ+LQ++L+TN  ++ FDEI+YCNIGN
Sbjct: 57  ASDSSSSLPVTLDTINPKVIKCEYAVRGEIVNIAQKLQEDLKTNKDAYPFDEIIYCNIGN 116

Query: 107 PQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHS 166
           PQSLGQQPITFFREVLALC + ++LD S T GLFS+DSIERAW+ILDQIPGRATGAYSHS
Sbjct: 117 PQSLGQQPITFFREVLALCSYTALLDESATHGLFSSDSIERAWKILDQIPGRATGAYSHS 176

Query: 167 QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYP 226
           QGIKGLRD IA GIEARDGFPADPNDIF+TDGASP VHMMMQLLI SE DGILCPIPQYP
Sbjct: 177 QGIKGLRDAIADGIEARDGFPADPNDIFMTDGASPGVHMMMQLLITSEKDGILCPIPQYP 236

Query: 227 LYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV 286
           LYSASIALHGGTLVPYYLDEA+GWGLE SE+KKQLE A++KGITVRAL VINPGNPTGQV
Sbjct: 237 LYSASIALHGGTLVPYYLDEASGWGLEISELKKQLEDARSKGITVRALAVINPGNPTGQV 296

Query: 287 LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQ 346
           L+EENQR +V FCK+EGLVLLADEVYQENVYVP+KKFHSFKKV+RSMGYGEKD++LVSFQ
Sbjct: 297 LSEENQRDVVKFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDLALVSFQ 356

Query: 347 SVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDE 406
           SVSKGYYGECGKRGGYMEVTGF+++VREQIYK+ASVNLCSNISGQILASL+MSPPK GD+
Sbjct: 357 SVSKGYYGECGKRGGYMEVTGFTSDVREQIYKMASVNLCSNISGQILASLIMSPPKPGDD 416

Query: 407 SYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEA 466
           SYESY AE+DGILSSLARRAKTLE+A N LEG+TCN+AEGAMYLFP + LP+KAI AAEA
Sbjct: 417 SYESYIAEKDGILSSLARRAKTLEEALNKLEGVTCNRAEGAMYLFPCLHLPQKAIAAAEA 476

Query: 467 EKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKN 526
           EKT PD FYC+RLL ATGIV+VPGSGF QVPGTWHFRCTILPQEDKIPAIV RLT FH++
Sbjct: 477 EKTAPDNFYCKRLLKATGIVVVPGSGFRQVPGTWHFRCTILPQEDKIPAIVDRLTAFHQS 536

Query: 527 FMDKFRN 533
           FMD+FR+
Sbjct: 537 FMDEFRD 543

Major alanine aminotransferase in roots.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|P52894|ALA2_HORVU Alanine aminotransferase 2 OS=Hordeum vulgare PE=1 SV=1

 Score =  805 bits (2080), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/478 (79%), Positives = 425/478 (88%)

Query: 56  ITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPI 115
           + VD+LNPKVLKCEYAVRGEIV  AQRLQ++L+T PGS  FDEILYCNIGNPQSLGQQP+
Sbjct: 5   VAVDNLNPKVLKCEYAVRGEIVIHAQRLQEQLKTQPGSLPFDEILYCNIGNPQSLGQQPV 64

Query: 116 TFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDT 175
           TFFREVLALCDHP +L R E + LFSADSI RA QIL  IPGRATGAYSHSQGIKGLRD 
Sbjct: 65  TFFREVLALCDHPDLLQREEIKTLFSADSISRAKQILAMIPGRATGAYSHSQGIKGLRDA 124

Query: 176 IAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALH 235
           IA+GI +RDGFPA+ +DIFLTDGASP VH+MMQLLIR+E DGIL PIPQYPLYSASIALH
Sbjct: 125 IASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYSASIALH 184

Query: 236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAI 295
           GG LVPYYL+E+TGWGLETS+VKKQLE A+++GI VRALVVINPGNPTGQVLAEENQ  I
Sbjct: 185 GGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDI 244

Query: 296 VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGE 355
           V FCK EGLVLLADEVYQEN+YV  KKFHSFKK+ RS+GYGE+D+ LVS+QSVSKGYYGE
Sbjct: 245 VKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGE 304

Query: 356 CGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAER 415
           CGKRGGY E+TGFSA VREQIYK+ASVNLCSNI+GQILASLVM+PPK  DESY SY AE+
Sbjct: 305 CGKRGGYFEITGFSAPVREQIYKIASVNLCSNITGQILASLVMNPPKASDESYASYKAEK 364

Query: 416 DGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFY 475
           DGIL+SLARRAK LE AFN LEGITCN+AEGAMY+FP+I LP+KAI+AA+A    PDAFY
Sbjct: 365 DGILASLARRAKALEHAFNKLEGITCNEAEGAMYVFPQICLPQKAIEAAKAANKAPDAFY 424

Query: 476 CRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKFRN 533
             RLL +TGIV+VPGSGFGQVPGTWHFRCTILPQEDKIPA+++R T FH+ FM ++R+
Sbjct: 425 ALRLLESTGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAVISRFTVFHEAFMSEYRD 482

Transfer of C3 units between the cytosol of mesophyll and bundle sheath cells to maintain a nitrogen-carbon balance in the C4-dicarboxylic pathway.

Hordeum vulgare (taxid: 4513)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

>sp|P34106|ALA2_PANMI Alanine aminotransferase 2 OS=Panicum miliaceum PE=1 SV=1

 Score =  772 bits (1994), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/478 (79%), Positives = 429/478 (89%)

Query: 56  ITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPI 115
           + V++LNPKVLKCEYAVRGEIV  AQ LQQ+LQT PGS  FDEILYCNIGNPQSLGQQP+
Sbjct: 5   VAVENLNPKVLKCEYAVRGEIVIHAQHLQQQLQTQPGSLPFDEILYCNIGNPQSLGQQPV 64

Query: 116 TFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDT 175
           TFFREVLALCDHP +L++ ET+ LFSAD+I RA QIL  IPGRATGAYSHSQGIKGLRD 
Sbjct: 65  TFFREVLALCDHPCLLEKEETKSLFSADAISRAKQILSTIPGRATGAYSHSQGIKGLRDA 124

Query: 176 IAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALH 235
           IAAGI +RDGFPA+ +DIF+TDGASP VHMMMQLLIR+E DGILCPIPQYPLYSASIALH
Sbjct: 125 IAAGIASRDGFPANADDIFVTDGASPGVHMMMQLLIRNEKDGILCPIPQYPLYSASIALH 184

Query: 236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAI 295
           GGTLVPYYLDE TGWGLE S++KKQLE A++KGI VRALVVINPGNPTGQVLAE+NQ  I
Sbjct: 185 GGTLVPYYLDEKTGWGLEISDLKKQLEDARSKGIDVRALVVINPGNPTGQVLAEDNQCDI 244

Query: 296 VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGE 355
           V FCK EGLVLLADEVYQEN+YV +KKF+SFKK++RS+GYGE D+ LVSFQSVSKGYYGE
Sbjct: 245 VRFCKNEGLVLLADEVYQENIYVDDKKFNSFKKIARSVGYGEDDLPLVSFQSVSKGYYGE 304

Query: 356 CGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAER 415
           CGKRGGYME+TGFSA VREQIYK+ASVNLCSNI+GQILASLVM+PPKVGDESY +Y AE+
Sbjct: 305 CGKRGGYMEITGFSAPVREQIYKIASVNLCSNITGQILASLVMNPPKVGDESYAAYKAEK 364

Query: 416 DGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFY 475
           DGIL SLARRAK LEDAFN+LEGI+CNKAEGAMYLFP+I LP+KAI+AA+A    PDAFY
Sbjct: 365 DGILQSLARRAKALEDAFNNLEGISCNKAEGAMYLFPQIHLPKKAIEAAKAANKAPDAFY 424

Query: 476 CRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKFRN 533
             RLL +TGIV+VPGSGFGQVPGTWH RCTILPQEDKIPA++TR   FH+ FM ++R+
Sbjct: 425 ALRLLESTGIVVVPGSGFGQVPGTWHIRCTILPQEDKIPAVITRFKAFHEAFMAEYRD 482

Transfer of C3 units between the cytosol of mesophyll and bundle sheath cells to maintain a nitrogen-carbon balance in the C4-dicarboxylic pathway.

Panicum miliaceum (taxid: 4540)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

>sp|Q9LR30|GGT1_ARATH Glutamate--glyoxylate aminotransferase 1 OS=Arabidopsis thaliana GN=GGAT1 PE=1 SV=1

 Score =  504 bits (1299), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 249/480 (51%), Positives = 327/480 (68%), Gaps = 11/480 (2%)

Query: 55  AITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQP 114
           A+  D+LN  V KC+YAVRGE+   A  LQ+E +         +I++ N+GNP +LGQ+P
Sbjct: 5   ALDYDTLNENVKKCQYAVRGELYLRASELQKEGK---------KIIFTNVGNPHALGQKP 55

Query: 115 ITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRD 174
           +TF R+V+ALC  P +LD      LF AD+I RA   L    G   GAYS S+G+ G+R 
Sbjct: 56  LTFPRQVVALCQAPFLLDDPNVGMLFPADAIARAKHYLSLTSG-GLGAYSDSRGLPGVRK 114

Query: 175 TIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL 234
            +A  I+ RDG+P+DP  IFLTDGAS  V  ++  +IR   DGIL P+PQYPLYSA+I+L
Sbjct: 115 EVAEFIQRRDGYPSDPELIFLTDGASKGVMQILNCVIRGNGDGILVPVPQYPLYSATISL 174

Query: 235 HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRA 294
            GGTLVPYYLDE+  WGL+ + +++ +  A+++GITVRA+V+INPGNPTGQ L+E N R 
Sbjct: 175 LGGTLVPYYLDESENWGLDVANLRQSVAQARSQGITVRAMVIINPGNPTGQCLSEANIRE 234

Query: 295 IVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG-EKDISLVSFQSVSKGYY 353
           I+ FC  E LVLL DEVYQ+N+Y  E+ F S KKV   MG    K++ LVSF +VSKGY+
Sbjct: 235 ILKFCYNEKLVLLGDEVYQQNIYQDERPFISSKKVLMEMGSPFSKEVQLVSFHTVSKGYW 294

Query: 354 GECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCA 413
           GECG+RGGY E+T     V E+IYKVAS+ L  N+S QI   L+++PPK GD SY+ +  
Sbjct: 295 GECGQRGGYFEMTNLPPRVVEEIYKVASIALSPNVSAQIFMGLMVNPPKPGDISYDQFAR 354

Query: 414 ERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDA 473
           E  GIL SL RRA+ + D FNS + + CN  EGAMY FP+I+LP  A++AA+    VPD 
Sbjct: 355 ESKGILESLRRRARLMTDGFNSCKNVVCNFTEGAMYSFPQIRLPTGALQAAKQAGKVPDV 414

Query: 474 FYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKFRN 533
           FYC +LL ATGI  VPGSGFGQ  G +H R TILP ED++P I+     F+  FM ++ N
Sbjct: 415 FYCLKLLEATGISTVPGSGFGQKEGVFHLRTTILPAEDEMPEIMDSFKKFNDEFMTQYDN 474

Catalyzes the glutamate:glyoxylate (GGT or GGAT), alanine:glyoxylate (AGT), alanine:2-oxoglutarate (AKT) and glutamate:pyruvate (GPT) aminotransferase reactions in peroxisomes. Required for abscisic acid (ABA)- and stress-mediated responses in an H(2)O(2)-dependent manner. Function as a photorespiratory aminotransferase that modulates amino acid content during photorespiration (GGAT activity); promotes serine, glycine and citrulline metabolism in response to light.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q54MJ7|ALAM_DICDI Probable alanine aminotransferase, mitochondrial OS=Dictyostelium discoideum GN=gpt PE=3 SV=1

 Score =  504 bits (1298), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 250/487 (51%), Positives = 343/487 (70%), Gaps = 6/487 (1%)

Query: 51  TSSPAITVDSLNPKVLKCEYAVRGEIV----SIAQRLQQELQTNPGSHSFDEILYCNIGN 106
           T   ++T+D++   V   +YAVRGE+V    +I+ +LQ++      +  F+EI+YCNIGN
Sbjct: 49  THKKSMTIDNICQNVRNAQYAVRGELVIRAEAISHQLQKQKTEGTKTLPFEEIVYCNIGN 108

Query: 107 PQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHS 166
           PQ L Q+P+T+FR+V++L + P +LD    + ++ AD I RA +IL  I    TGAYS+S
Sbjct: 109 PQQLKQKPLTYFRQVVSLVECPDLLDNPYVEKIYPADVISRAKEILGSI-NNTTGAYSNS 167

Query: 167 QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYP 226
           QGI  +  ++A  IE RDG  +DP++IFLTDGAS  V  +++LLI+  +DGIL PIPQYP
Sbjct: 168 QGIGLVLRSVADFIERRDGHKSDPSEIFLTDGASVGVQRILKLLIKDRSDGILIPIPQYP 227

Query: 227 LYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV 286
           LYSA+I L+ G+ + Y L+E  GW LE S+++     A +KGI  RALV+INPGNPTGQ 
Sbjct: 228 LYSATIELYNGSQLGYLLNEEKGWSLEISQLEHSYNDAVSKGINPRALVIINPGNPTGQC 287

Query: 287 LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKK-FHSFKKVSRSMGYGEKDISLVSF 345
           L   N   IV FC ++ +VLLADEVYQENVYV E K F SFKKV + MG    D+ +VSF
Sbjct: 288 LDRANMEEIVKFCLEKNVVLLADEVYQENVYVKESKPFISFKKVVKDMGGDYADLEMVSF 347

Query: 346 QSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGD 405
            SVSKG+ GECGKRGGYME+ G + +V+ +IYK+AS+ LC N+ GQ++  L++ PP  G+
Sbjct: 348 HSVSKGFVGECGKRGGYMELNGVTQDVKAEIYKLASIGLCPNVIGQLVVDLMVRPPVAGE 407

Query: 406 ESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAE 465
           +S++ Y  ERD I  SL +RA  L +A N+LEG+TCN +EGAMY FP+I+LP KA++ A 
Sbjct: 408 QSHDLYLKERDNIYESLKKRANLLTNALNNLEGVTCNPSEGAMYAFPQIRLPAKAVEYAN 467

Query: 466 AEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHK 525
           +    PDA+YC +LL ATGI +VPGSGFGQ  GTWHFR T LP E+ I  +  R+ DFH+
Sbjct: 468 SIGKAPDAYYCIQLLEATGICVVPGSGFGQKDGTWHFRTTFLPSEEAIEGVCKRIADFHQ 527

Query: 526 NFMDKFR 532
           +FM+K++
Sbjct: 528 SFMNKYK 534

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

>sp|Q9S7E9|GGT2_ARATH Glutamate--glyoxylate aminotransferase 2 OS=Arabidopsis thaliana GN=GGAT2 PE=1 SV=1

 Score =  498 bits (1283), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 245/478 (51%), Positives = 326/478 (68%), Gaps = 11/478 (2%)

Query: 55  AITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQP 114
           A+  +SLN  V  C+YAVRGE+   A  LQ+E +         +I++ N+GNP +LGQ+P
Sbjct: 5   ALDYESLNENVKNCQYAVRGELYLRASELQKEGK---------KIIFTNVGNPHALGQKP 55

Query: 115 ITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRD 174
           +TF R+V++LC  P +LD      +F AD+I RA   L    G   GAYS S+G+ G+R 
Sbjct: 56  LTFPRQVVSLCQAPFLLDDPNVGMIFPADAIARAKHYLSLTSG-GLGAYSDSRGLPGVRK 114

Query: 175 TIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL 234
            +A  IE RDG+P+DP  IFLTDGAS  V  ++  +IR + DGIL P+PQYPLYSA+I+L
Sbjct: 115 EVAEFIERRDGYPSDPELIFLTDGASKGVMQILNCVIRGQKDGILVPVPQYPLYSATISL 174

Query: 235 HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRA 294
            GGTLVPYYL+E+  WGL+ + +++ +  A+++GITVRA+V+INPGNPTGQ L+E N R 
Sbjct: 175 LGGTLVPYYLEESENWGLDVNNLRQSVAQARSQGITVRAMVIINPGNPTGQCLSEANIRE 234

Query: 295 IVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG-EKDISLVSFQSVSKGYY 353
           I+ FC  E LVLL DEVYQ+N+Y  E+ F S KKV   MG    K++ L+SF +VSKGY+
Sbjct: 235 ILRFCCDERLVLLGDEVYQQNIYQDERPFISSKKVLMDMGAPISKEVQLISFHTVSKGYW 294

Query: 354 GECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCA 413
           GECG+RGGY E+T       E+IYKVAS+ L  N+S QI   L++SPPK GD SY+ +  
Sbjct: 295 GECGQRGGYFEMTNIPPRTVEEIYKVASIALSPNVSAQIFMGLMVSPPKPGDISYDQFVR 354

Query: 414 ERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDA 473
           E  GIL SL RRA+ + D FNS + + CN  EGAMY FP+I+LP KAI+AA+    VPD 
Sbjct: 355 ESKGILESLRRRARMMTDGFNSCKNVVCNFTEGAMYSFPQIKLPSKAIQAAKQAGKVPDV 414

Query: 474 FYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKF 531
           FYC +LL ATGI  VPGSGFGQ  G +H R TILP E+++P I+     F+  FM ++
Sbjct: 415 FYCLKLLEATGISTVPGSGFGQKEGVFHLRTTILPAEEEMPEIMDSFKKFNDEFMSQY 472

Catalyzes the Glu:glyoxylate aminotransferase (GGT), Ala:glyoxylate aminotransferase (AGT), Ala:2-oxoglutarate aminotransferase (AKT) and Glu:pyruvate aminotransferase (GPT) reactions in peroxisomes.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|P52893|ALAM_YEAST Probable alanine aminotransferase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ALT1 PE=1 SV=1

 Score =  453 bits (1166), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 233/489 (47%), Positives = 323/489 (66%), Gaps = 18/489 (3%)

Query: 56  ITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPI 115
           +T++ +N  VLK +YAVRG I   A+ L+ +L+ +P S  FD I+  NIGNPQ L Q+P+
Sbjct: 111 LTLEDVNENVLKAKYAVRGAIPMRAEELKAQLEKDPQSLPFDRIINANIGNPQQLQQKPL 170

Query: 116 TFFREVLALCDHPSILDRSETQ----GLFSADSIERAWQILDQIPGRATGAYSHSQGIKG 171
           T++R+VL+L  +P +L+++E Q     LF  D+I+RA  +++ I G + GAYS SQG++G
Sbjct: 171 TYYRQVLSLLQYPELLNQNEQQLVDSKLFKLDAIKRAKSLMEDI-GGSVGAYSSSQGVEG 229

Query: 172 LRDTIAAGIEARD-GFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA 230
           +R ++A  I  RD G  + P DIFLT GAS AV+ ++ +  R    G+L PIPQYPLY+A
Sbjct: 230 IRKSVAEFITKRDEGEISYPEDIFLTAGASAAVNYLLSIFCRGPETGVLIPIPQYPLYTA 289

Query: 231 SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE 290
           ++AL+    +PYYLDE +GW     E++  ++ A    I    LVVINPGNPTG VL+ E
Sbjct: 290 TLALNNSQALPYYLDENSGWSTNPEEIETVVKEAIQNEIKPTVLVVINPGNPTGAVLSPE 349

Query: 291 NQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY---GEKD-ISLVSFQ 346
           +   I +   K G V++ADEVYQEN++ P  KFHS KK+ R +     G+ D + L S  
Sbjct: 350 SIAQIFEVAAKYGTVVIADEVYQENIF-PGTKFHSMKKILRHLQREHPGKFDNVQLASLH 408

Query: 347 SVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDE 406
           S SKG  GECG+RGGYME+TGFS E+R+ I K+AS++LC  ++GQ L  L++ PP  G+E
Sbjct: 409 STSKGVSGECGQRGGYMELTGFSHEMRQVILKLASISLCPVVTGQALVDLMVRPPVEGEE 468

Query: 407 SYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEA 466
           S+ES  AER+ I   L  RA TL + FNSLEGI C K +GAMYLFP+I LP KA++ A  
Sbjct: 469 SFESDQAERNSIHEKLITRAMTLYETFNSLEGIECQKPQGAMYLFPKIDLPFKAVQEARH 528

Query: 467 EKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAI--VTRLTDFH 524
            +  PD FYC++LL +TGI  VPGSGFGQ PGT+H R T L      P +  + +   FH
Sbjct: 529 LELTPDEFYCKKLLESTGICTVPGSGFGQEPGTYHLRTTFL-----APGLEWIKKWESFH 583

Query: 525 KNFMDKFRN 533
           K F D++R+
Sbjct: 584 KEFFDQYRD 592

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

>sp|Q8BGT5|ALAT2_MOUSE Alanine aminotransferase 2 OS=Mus musculus GN=Gpt2 PE=2 SV=1

 Score =  452 bits (1162), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 227/489 (46%), Positives = 318/489 (65%), Gaps = 13/489 (2%)

Query: 50  PTSSP---AITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGN 106
           P  SP    +T++S+NP+V   EYAVRG IV  A  ++ ELQ       F E++  NIG+
Sbjct: 39  PERSPRDRILTLESMNPQVKAVEYAVRGPIVLKAGEIEMELQRGI-KKPFTEVIRANIGD 97

Query: 107 PQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHS 166
             ++GQQPITF R+V+ALC +P++L+       F  D+ +RA +IL    G + G+YS S
Sbjct: 98  AHAMGQQPITFLRQVMALCTYPNLLNSPS----FPEDAKKRARRILQACGGNSLGSYSAS 153

Query: 167 QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR---SENDGILCPIP 223
           QG+  +R+ +AA I  RDG PADP++I+LT GAS  +  +++LL+        G++ PIP
Sbjct: 154 QGVNCIREDVAAFITRRDGVPADPDNIYLTTGASDGISTILKLLVSGGGKSRTGVMIPIP 213

Query: 224 QYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT 283
           QYPLYSA I+      V YYLDE   W L   E+++ L  AK      + L +INPGNPT
Sbjct: 214 QYPLYSAVISELDAVQVNYYLDEENCWALNVDELRRALRQAKDH-CDPKVLCIINPGNPT 272

Query: 284 GQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG-EKDISL 342
           GQV + +    ++ F  +E L LLADEVYQ+NVY P+ +FHSFKKV   MG+    ++ L
Sbjct: 273 GQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYQMGHEYSSNVEL 332

Query: 343 VSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPK 402
            SF S SKGY GECG RGGYMEV     E++ Q+ K+ SV LC  +SGQ    +V++PP+
Sbjct: 333 ASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLSVRLCPPVSGQAAMDIVVNPPE 392

Query: 403 VGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIK 462
            G+ES+E +  E++ +L +LA++AK  ED FN + GI CN  +GAMY FPRI +P KA++
Sbjct: 393 PGEESFEQFSREKEFVLGNLAKKAKLTEDLFNQVPGIQCNPLQGAMYAFPRILIPAKAVE 452

Query: 463 AAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTD 522
           AA++ K  PD FYC +LL  TGI +VPGSGFGQ  GT+HFR TILP  DK+  ++ ++ D
Sbjct: 453 AAQSHKMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPVDKLKTVLHKVKD 512

Query: 523 FHKNFMDKF 531
           FH  F++++
Sbjct: 513 FHLKFLEQY 521

Catalyzes the reversible transamination between alanine and 2-oxoglutarate to form pyruvate and glutamate.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

>sp|Q8TD30|ALAT2_HUMAN Alanine aminotransferase 2 OS=Homo sapiens GN=GPT2 PE=1 SV=1

 Score =  448 bits (1153), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 225/481 (46%), Positives = 317/481 (65%), Gaps = 11/481 (2%)

Query: 56  ITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPI 115
           +T++S+NP+V   EYAVRG IV  A  ++ ELQ       F E++  NIG+ Q++GQQPI
Sbjct: 48  LTLESMNPQVKAVEYAVRGPIVLKAGEIELELQRGI-KKPFTEVIRANIGDAQAMGQQPI 106

Query: 116 TFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDT 175
           TF R+V+ALC +P++LD       F  D+ +RA +IL    G + G+YS SQG+  +R+ 
Sbjct: 107 TFLRQVMALCTYPNLLDSPS----FPEDAKKRARRILQACGGNSLGSYSASQGVNCIRED 162

Query: 176 IAAGIEARDG-FPADPNDIFLTDGASPAVHMMMQLLIR---SENDGILCPIPQYPLYSAS 231
           +AA I  RDG  PADP++I+LT GAS  +  ++++L+        G++ PIPQYPLYSA 
Sbjct: 163 VAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSAV 222

Query: 232 IALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEEN 291
           I+      V YYLDE   W L  +E+++ ++ AK      + L +INPGNPTGQV + + 
Sbjct: 223 ISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDH-CDPKVLCIINPGNPTGQVQSRKC 281

Query: 292 QRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG-YGEKDISLVSFQSVSK 350
              ++ F  +E L LLADEVYQ+NVY P+ +FHSFKKV   MG     ++ L SF S SK
Sbjct: 282 IEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSK 341

Query: 351 GYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYES 410
           GY GECG RGGYMEV     E++ Q+ K+ SV LC  +SGQ    +V++PP  G+ES+E 
Sbjct: 342 GYMGECGYRGGYMEVINLHPEIKGQLVKLLSVRLCPPVSGQAAMDIVVNPPVAGEESFEQ 401

Query: 411 YCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTV 470
           +  E++ +L +LA++AK  ED FN + GI CN  +GAMY FPRI +P KA++AA+A +  
Sbjct: 402 FSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMA 461

Query: 471 PDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDK 530
           PD FYC +LL  TGI +VPGSGFGQ  GT+HFR TILP  +K+  ++ ++ DFH NF++K
Sbjct: 462 PDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPVEKLKTVLQKVKDFHINFLEK 521

Query: 531 F 531
           +
Sbjct: 522 Y 522

Catalyzes the reversible transamination between alanine and 2-oxoglutarate to form pyruvate and glutamate.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	533
30698866	540	alanine aminotransferase 2 [Arabidopsis	0.990	0.977	0.792	0.0
297839097	535	ALAAT2 [Arabidopsis lyrata subsp. lyrata	1.0	0.996	0.8	0.0
334183856	553	alanine aminotransferase 2 [Arabidopsis	0.990	0.954	0.774	0.0
21954069	532	putative alanine aminotransferase [Arabi	0.947	0.949	0.827	0.0
449453397	528	PREDICTED: alanine aminotransferase 2, m	0.896	0.905	0.872	0.0
359482440	526	PREDICTED: alanine aminotransferase 2 [V	0.981	0.994	0.826	0.0
357514319	524	Alanine aminotransferase [Medicago trunc	0.983	1.0	0.799	0.0
224074105	481	predicted protein [Populus trichocarpa]	0.900	0.997	0.895	0.0
449519802	493	PREDICTED: alanine aminotransferase 2, m	0.881	0.953	0.882	0.0
355755168	484	PLP-dependent aminotransferase [Papaver	0.898	0.989	0.864	0.0

>gi|30698866|ref|NP_565040.2| alanine aminotransferase 2 [Arabidopsis thaliana] gi|75173856|sp|Q9LDV4.1|ALAT2_ARATH RecName: Full=Alanine aminotransferase 2, mitochondrial; Short=AtAlaAT2; Short=AtAlaATm; AltName: Full=Alanine-2-oxoglutarate aminotransferase 3; Flags: Precursor gi|9082268|gb|AAF82781.1|AF275371_1 alanine aminotransferase [Arabidopsis thaliana] gi|12325273|gb|AAG52580.1|AC016529_11 putative alanine aminotransferase; 79592-76658 [Arabidopsis thaliana] gi|332197184|gb|AEE35305.1| alanine aminotransferase 2 [Arabidopsis thaliana]

 Score =  906 bits (2341), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/545 (79%), Positives = 487/545 (89%), Gaps = 17/545 (3%)

Query: 1   MRRFVIGRGRNFLNRSHQQN------LLS------SSSSHCQSRFLSSTSVIDSPSSSSM 48
           MRRF+I + +  ++ S +Q+       LS      +SS    SRF SSTS + +  S+S 
Sbjct: 1   MRRFLINQAKGLVDHSRRQHHHKSPSFLSPQPRPLASSPPALSRFFSSTSEMSASDSTSS 60

Query: 49  APTSSPAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQ 108
            P     +T+DS+NPKVLKCEYAVRGEIV+IAQ+LQ++L+TN  ++ FDEI+YCNIGNPQ
Sbjct: 61  LP-----VTLDSINPKVLKCEYAVRGEIVNIAQKLQEDLKTNKDAYPFDEIIYCNIGNPQ 115

Query: 109 SLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQG 168
           SLGQ PI FFREVLALCDH S+LD SET GLFS DSI+RAW+ILD IPGRATGAYSHSQG
Sbjct: 116 SLGQLPIKFFREVLALCDHASLLDESETHGLFSTDSIDRAWRILDHIPGRATGAYSHSQG 175

Query: 169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLY 228
           IKGLRD IAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL+ SE DGIL PIPQYPLY
Sbjct: 176 IKGLRDVIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLLSSEKDGILSPIPQYPLY 235

Query: 229 SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLA 288
           SASIALHGG+LVPYYLDEATGWGLE S++KKQLE A++KGI+VRALVVINPGNPTGQVLA
Sbjct: 236 SASIALHGGSLVPYYLDEATGWGLEISDLKKQLEEARSKGISVRALVVINPGNPTGQVLA 295

Query: 289 EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSV 348
           EENQR IV+FCK+EGLVLLADEVYQENVYVP+KKFHSFKKV+RS+GYGEKDISLVSFQSV
Sbjct: 296 EENQRDIVNFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSLGYGEKDISLVSFQSV 355

Query: 349 SKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESY 408
           SKGYYGECGKRGGYMEVTGF+++VREQIYK+ASVNLCSNISGQILASLVMSPPK GD+SY
Sbjct: 356 SKGYYGECGKRGGYMEVTGFTSDVREQIYKMASVNLCSNISGQILASLVMSPPKPGDDSY 415

Query: 409 ESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEK 468
           +SY AERDGILSS+A+RAKTLEDA NSLEG+TCN+AEGAMYLFPRI LP+KAI+AAEAEK
Sbjct: 416 DSYMAERDGILSSMAKRAKTLEDALNSLEGVTCNRAEGAMYLFPRINLPQKAIEAAEAEK 475

Query: 469 TVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFM 528
           T PDAFYC+RLLNATG+V+VPGSGFGQVPGTWHFRCTILPQEDKIPAIV RLT+FHK+FM
Sbjct: 476 TAPDAFYCKRLLNATGVVVVPGSGFGQVPGTWHFRCTILPQEDKIPAIVNRLTEFHKSFM 535

Query: 529 DKFRN 533
           D+FRN
Sbjct: 536 DEFRN 540

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839097|ref|XP_002887430.1| ALAAT2 [Arabidopsis lyrata subsp. lyrata] gi|297333271|gb|EFH63689.1| ALAAT2 [Arabidopsis lyrata subsp. lyrata]

 Score =  904 bits (2335), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/535 (80%), Positives = 484/535 (90%), Gaps = 2/535 (0%)

Query: 1   MRRFVIGRGRNFLNRSHQQNLLSSSSSHCQSRFLSSTSVIDSPSS--SSMAPTSSPAITV 58
           MRRF+I + +  ++ S +Q+  S S    QSR L+S S   S +S  S+   TSS  +T+
Sbjct: 1   MRRFLINQAKGLVDHSRRQHHKSPSFLSPQSRPLASLSRFFSSTSEMSASDSTSSLPVTL 60

Query: 59  DSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFF 118
           DS+NPKVLKCEYAVRGEIV+IAQ+LQ++L+ N  ++ FDEI+YCNIGNPQSLGQ PI FF
Sbjct: 61  DSINPKVLKCEYAVRGEIVNIAQKLQEDLKANKDAYPFDEIIYCNIGNPQSLGQLPIRFF 120

Query: 119 REVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA 178
           REVLALCDH S+LD SET GLFS DSI+RAW+ILDQIPGRATGAYSHSQGIKGLRD IAA
Sbjct: 121 REVLALCDHASLLDESETHGLFSTDSIDRAWKILDQIPGRATGAYSHSQGIKGLRDVIAA 180

Query: 179 GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGT 238
           GIEARDGFPADPNDIFLTDGASPAVHMMMQLL+ S+ DGILCPIPQYPLYSASIALHGG+
Sbjct: 181 GIEARDGFPADPNDIFLTDGASPAVHMMMQLLLSSKKDGILCPIPQYPLYSASIALHGGS 240

Query: 239 LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF 298
           LVPYYLDEATGWGLE S++KKQLE A++KGI VRALVVINPGNPTGQVLAE+NQR IV+F
Sbjct: 241 LVPYYLDEATGWGLEISDLKKQLEEARSKGIAVRALVVINPGNPTGQVLAEDNQRDIVNF 300

Query: 299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGK 358
           CK+EGLVLLADEVYQENVYVP+KKFHSFKKV+RS+GYGEKDISLVSFQSVSKGYYGECGK
Sbjct: 301 CKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSLGYGEKDISLVSFQSVSKGYYGECGK 360

Query: 359 RGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGI 418
           RGGYMEVTGF+++VREQIYK+ASVNLCSNISGQILASLVMSPPK GD+SY+SY AERDGI
Sbjct: 361 RGGYMEVTGFTSDVREQIYKMASVNLCSNISGQILASLVMSPPKPGDDSYDSYMAERDGI 420

Query: 419 LSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRR 478
           LSS+A+RAKTLED  NSLEG+TCN+AEGAMYLFPRI LP+KAI+AAEAEKT PDAFYC+R
Sbjct: 421 LSSMAKRAKTLEDGLNSLEGVTCNRAEGAMYLFPRINLPQKAIEAAEAEKTAPDAFYCKR 480

Query: 479 LLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKFRN 533
           LLNATG+V+VPGSGFGQ PGTWHFRCTILPQEDKIPAIV RLT+FHK+FMD+FR+
Sbjct: 481 LLNATGVVVVPGSGFGQAPGTWHFRCTILPQEDKIPAIVNRLTEFHKSFMDEFRD 535

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334183856|ref|NP_001185380.1| alanine aminotransferase 2 [Arabidopsis thaliana] gi|332197186|gb|AEE35307.1| alanine aminotransferase 2 [Arabidopsis thaliana]

 Score =  897 bits (2319), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/558 (77%), Positives = 487/558 (87%), Gaps = 30/558 (5%)

Query: 1   MRRFVIGRGRNFLNRSHQQN------LLS------SSSSHCQSRFLSSTSVIDSPSSSSM 48
           MRRF+I + +  ++ S +Q+       LS      +SS    SRF SSTS + +  S+S 
Sbjct: 1   MRRFLINQAKGLVDHSRRQHHHKSPSFLSPQPRPLASSPPALSRFFSSTSEMSASDSTSS 60

Query: 49  APTSSPAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQ 108
            P     +T+DS+NPKVLKCEYAVRGEIV+IAQ+LQ++L+TN  ++ FDEI+YCNIGNPQ
Sbjct: 61  LP-----VTLDSINPKVLKCEYAVRGEIVNIAQKLQEDLKTNKDAYPFDEIIYCNIGNPQ 115

Query: 109 SLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQG 168
           SLGQ PI FFREVLALCDH S+LD SET GLFS DSI+RAW+ILD IPGRATGAYSHSQG
Sbjct: 116 SLGQLPIKFFREVLALCDHASLLDESETHGLFSTDSIDRAWRILDHIPGRATGAYSHSQG 175

Query: 169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV-------------HMMMQLLIRSEN 215
           IKGLRD IAAGIEARDGFPADPNDIFLTDGASPAV             HMMMQLL+ SE 
Sbjct: 176 IKGLRDVIAAGIEARDGFPADPNDIFLTDGASPAVTIKTKTLSHRVRVHMMMQLLLSSEK 235

Query: 216 DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALV 275
           DGIL PIPQYPLYSASIALHGG+LVPYYLDEATGWGLE S++KKQLE A++KGI+VRALV
Sbjct: 236 DGILSPIPQYPLYSASIALHGGSLVPYYLDEATGWGLEISDLKKQLEEARSKGISVRALV 295

Query: 276 VINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY 335
           VINPGNPTGQVLAEENQR IV+FCK+EGLVLLADEVYQENVYVP+KKFHSFKKV+RS+GY
Sbjct: 296 VINPGNPTGQVLAEENQRDIVNFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSLGY 355

Query: 336 GEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILAS 395
           GEKDISLVSFQSVSKGYYGECGKRGGYMEVTGF+++VREQIYK+ASVNLCSNISGQILAS
Sbjct: 356 GEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFTSDVREQIYKMASVNLCSNISGQILAS 415

Query: 396 LVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQ 455
           LVMSPPK GD+SY+SY AERDGILSS+A+RAKTLEDA NSLEG+TCN+AEGAMYLFPRI 
Sbjct: 416 LVMSPPKPGDDSYDSYMAERDGILSSMAKRAKTLEDALNSLEGVTCNRAEGAMYLFPRIN 475

Query: 456 LPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPA 515
           LP+KAI+AAEAEKT PDAFYC+RLLNATG+V+VPGSGFGQVPGTWHFRCTILPQEDKIPA
Sbjct: 476 LPQKAIEAAEAEKTAPDAFYCKRLLNATGVVVVPGSGFGQVPGTWHFRCTILPQEDKIPA 535

Query: 516 IVTRLTDFHKNFMDKFRN 533
           IV RLT+FHK+FMD+FRN
Sbjct: 536 IVNRLTEFHKSFMDEFRN 553

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21954069|gb|AAK59591.2| putative alanine aminotransferase [Arabidopsis thaliana]

 Score =  896 bits (2315), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/510 (82%), Positives = 471/510 (92%), Gaps = 5/510 (0%)

Query: 24  SSSSHCQSRFLSSTSVIDSPSSSSMAPTSSPAITVDSLNPKVLKCEYAVRGEIVSIAQRL 83
           +SS    SRF SSTS + +  S+S  P     +T+DS+NPKVLKCEYAVRGEIV+IAQ+L
Sbjct: 28  ASSPPALSRFFSSTSEMSASDSTSSLP-----VTLDSINPKVLKCEYAVRGEIVNIAQKL 82

Query: 84  QQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSAD 143
           Q++L+TN  ++ FDEI+YCNIGNPQSLGQ PI FFREVLALCDH S+LD SET GLFS D
Sbjct: 83  QEDLKTNKDAYPFDEIIYCNIGNPQSLGQLPIKFFREVLALCDHASLLDESETHGLFSTD 142

Query: 144 SIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV 203
           SI+RAW+ILD IPGRATGAYSHSQGIKGLRD IAAGIEARDGFPADPNDIFLTDGASPAV
Sbjct: 143 SIDRAWRILDHIPGRATGAYSHSQGIKGLRDVIAAGIEARDGFPADPNDIFLTDGASPAV 202

Query: 204 HMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEA 263
           HMMMQLL+ SE DGIL PIPQYPLYSASIALHGG+LVPYYLDEATGWGLE S+++KQLE 
Sbjct: 203 HMMMQLLLSSEKDGILSPIPQYPLYSASIALHGGSLVPYYLDEATGWGLEISDLEKQLEE 262

Query: 264 AKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKF 323
           A++KGI+VRALVVINPGNPTGQVLAEENQR IV+FCK+EGLVLLADEVYQENVYVP+KKF
Sbjct: 263 ARSKGISVRALVVINPGNPTGQVLAEENQRDIVNFCKQEGLVLLADEVYQENVYVPDKKF 322

Query: 324 HSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVN 383
           HSFKKV+RS+GYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGF+++VREQIYK+ASVN
Sbjct: 323 HSFKKVARSLGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFTSDVREQIYKMASVN 382

Query: 384 LCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNK 443
           LCSNISGQILASLVMSPPK GD+SY+SY AERDGILSS+A+RAKTLEDA NSLEG+TCN+
Sbjct: 383 LCSNISGQILASLVMSPPKPGDDSYDSYMAERDGILSSMAKRAKTLEDALNSLEGVTCNR 442

Query: 444 AEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFR 503
           AEGAMYLFPRI LP+KAI+AAEAEKT PDAFYC+RLLNATG+V+VPGSGFGQVPGTWHFR
Sbjct: 443 AEGAMYLFPRINLPQKAIEAAEAEKTAPDAFYCKRLLNATGVVVVPGSGFGQVPGTWHFR 502

Query: 504 CTILPQEDKIPAIVTRLTDFHKNFMDKFRN 533
           CTILPQEDKIPAIV RLT+FHK+FMD+FRN
Sbjct: 503 CTILPQEDKIPAIVNRLTEFHKSFMDEFRN 532

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453397|ref|XP_004144444.1| PREDICTED: alanine aminotransferase 2, mitochondrial-like [Cucumis sativus]

 Score =  894 bits (2309), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/478 (87%), Positives = 451/478 (94%)

Query: 56  ITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPI 115
           +++ ++N KVLKCEYAVRGEIV++AQ+LQ+EL   PGSH FDEILYCNIGNPQSLGQQPI
Sbjct: 51  LSIATINDKVLKCEYAVRGEIVTLAQKLQEELSVKPGSHPFDEILYCNIGNPQSLGQQPI 110

Query: 116 TFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDT 175
           TFFREVLALCDHP+ILD+SETQGLFS D+I RAWQILDQIPGRATGAYSHSQGIKGLRDT
Sbjct: 111 TFFREVLALCDHPAILDKSETQGLFSTDAIARAWQILDQIPGRATGAYSHSQGIKGLRDT 170

Query: 176 IAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALH 235
           IAAGIEARDG+PADPND FLTDGASPAVHMMMQLLIRSE DGILCPIPQYPLYSASIALH
Sbjct: 171 IAAGIEARDGYPADPNDFFLTDGASPAVHMMMQLLIRSEGDGILCPIPQYPLYSASIALH 230

Query: 236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAI 295
           GGTLVPYYLDEATGWGLETSE+KKQLEAAK+KGI VRALVVINPGNPTGQVLAE+NQR I
Sbjct: 231 GGTLVPYYLDEATGWGLETSELKKQLEAAKSKGINVRALVVINPGNPTGQVLAEDNQRQI 290

Query: 296 VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGE 355
           V+FCK+EGLVLLADEVYQEN+Y P+KKFHSFKK+SRSMGYG +DI+LVSFQSVSKGYYGE
Sbjct: 291 VEFCKQEGLVLLADEVYQENIYAPDKKFHSFKKISRSMGYGNEDIALVSFQSVSKGYYGE 350

Query: 356 CGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAER 415
           CGKRGGYMEVTGFS E+REQIYKVASVNLCSNISGQILASLVM+PPKVGDES+ESY AE+
Sbjct: 351 CGKRGGYMEVTGFSPEIREQIYKVASVNLCSNISGQILASLVMNPPKVGDESFESYSAEK 410

Query: 416 DGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFY 475
           DGILSSL RRAK LEDA NSLEG+ CNKAEGAMYLFPRI LP KAIKAAEA  T PD FY
Sbjct: 411 DGILSSLERRAKALEDALNSLEGVECNKAEGAMYLFPRIYLPAKAIKAAEAVNTSPDTFY 470

Query: 476 CRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKFRN 533
           CRRLLNATGIV+VPGSGFGQVPGTWHFRCTILPQEDKIPAIV+RLT+FHK FM++FR+
Sbjct: 471 CRRLLNATGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAIVSRLTEFHKQFMEEFRD 528

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482440|ref|XP_002265294.2| PREDICTED: alanine aminotransferase 2 [Vitis vinifera]

 Score =  891 bits (2303), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/536 (82%), Positives = 484/536 (90%), Gaps = 13/536 (2%)

Query: 1   MRRFVIGRGRNFLNRSHQQNLLSSSSSHCQSRFLSSTSVIDSPSSSSM---APTSSPAIT 57
           MRRFV G   ++  RS          SH   RF SST+ + +  S S    A   +P +T
Sbjct: 1   MRRFVSGVLSSYQKRSL---------SHRSLRFFSSTTSLSNSDSPSSSSSAAMPTP-VT 50

Query: 58  VDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITF 117
           ++++NPKVL+CEYAVRGEIV++AQRLQQELQ  PGS  FDEILYCNIGNPQSLGQQPITF
Sbjct: 51  LETINPKVLECEYAVRGEIVTLAQRLQQELQEKPGSLPFDEILYCNIGNPQSLGQQPITF 110

Query: 118 FREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA 177
           FREV+ALCDHP ILD+SETQGLFSAD+IERAWQILDQIPGRATGAYSHSQGIKGLRDTIA
Sbjct: 111 FREVIALCDHPPILDKSETQGLFSADAIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA 170

Query: 178 AGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGG 237
           AGIEARDGFP++PNDIFLTDGASPAVHMMMQLLIR+E DGILCPIPQYPLYSASI LHGG
Sbjct: 171 AGIEARDGFPSNPNDIFLTDGASPAVHMMMQLLIRTEKDGILCPIPQYPLYSASIVLHGG 230

Query: 238 TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD 297
           TLVPYYLDEATGWGLE SE++KQLE AK+KGITVRALVVINPGNPTGQVL+E+NQR IV+
Sbjct: 231 TLVPYYLDEATGWGLEISELQKQLEDAKSKGITVRALVVINPGNPTGQVLSEDNQRDIVE 290

Query: 298 FCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG 357
           FCKKEGLVLLADEVYQENVYVP+KKFHSFKK+SRSMGYGE+DIS+VSFQSVSKGYYGECG
Sbjct: 291 FCKKEGLVLLADEVYQENVYVPDKKFHSFKKISRSMGYGEEDISVVSFQSVSKGYYGECG 350

Query: 358 KRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDG 417
           KRGGYMEVTGF A+VREQIYKVASVNLCSNI+GQILASLVMSPPKVGDESYESY  E+DG
Sbjct: 351 KRGGYMEVTGFGADVREQIYKVASVNLCSNITGQILASLVMSPPKVGDESYESYFMEKDG 410

Query: 418 ILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCR 477
           ILSSLARRAKTLEDA NSLEG+TCNKAEGAMYLFPRI LPEKAIKAAEA KT PDAFY R
Sbjct: 411 ILSSLARRAKTLEDALNSLEGVTCNKAEGAMYLFPRIHLPEKAIKAAEAAKTAPDAFYAR 470

Query: 478 RLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKFRN 533
           RLLNATGIV+VPGSGFGQVPGTWHFRCTILPQEDKIPA+V+RLT+FHK FM++FR+
Sbjct: 471 RLLNATGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAVVSRLTEFHKGFMEEFRD 526

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357514319|ref|XP_003627448.1| Alanine aminotransferase [Medicago truncatula] gi|355521470|gb|AET01924.1| Alanine aminotransferase [Medicago truncatula]

 Score =  887 bits (2293), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/533 (79%), Positives = 471/533 (88%), Gaps = 9/533 (1%)

Query: 1   MRRFVIGRGRNFLNRSHQQNLLSSSSSHCQSRFLSSTSVIDSPSSSSMAPTSSPAITVDS 60
           MR+    R R+  NRS    L+   + + Q    S        S SSMA  S   +T  +
Sbjct: 1   MRKSAADRFRHLFNRS----LVFVRNQNQQYHHPSPLR-----SLSSMASDSPFPVTAQN 51

Query: 61  LNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFRE 120
           +NP+VLKC+YAVRGEIV++AQ LQ+ LQ NP +HSFDEI+YCNIGNPQSLGQQPITFFRE
Sbjct: 52  INPQVLKCQYAVRGEIVTLAQNLQKALQANPDAHSFDEIIYCNIGNPQSLGQQPITFFRE 111

Query: 121 VLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGI 180
           VLALCD+P++LD+SETQGLFSADSIERAWQI+DQIPGRATGAYSHSQGI+GLRDTIAAGI
Sbjct: 112 VLALCDYPALLDKSETQGLFSADSIERAWQIVDQIPGRATGAYSHSQGIQGLRDTIAAGI 171

Query: 181 EARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLV 240
           E RDGFP + NDIFLTDGASPAVHMMMQLLIRSE DGILCPIPQYPLYSASI LHGG LV
Sbjct: 172 EERDGFPCNANDIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYSASITLHGGHLV 231

Query: 241 PYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK 300
           PYYLDEATGWGLE SE+KKQLE AK+KGI+VRAL VINPGNPTGQVLAE+NQRAIV+FCK
Sbjct: 232 PYYLDEATGWGLEISELKKQLEDAKSKGISVRALAVINPGNPTGQVLAEDNQRAIVEFCK 291

Query: 301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRG 360
           +EGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG+ DI LVSFQSVSKGY+GECGKRG
Sbjct: 292 QEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGDNDICLVSFQSVSKGYHGECGKRG 351

Query: 361 GYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILS 420
           GYMEVTGFS +VREQIYKVASVNLCSNI+GQILASL+MSPPKVGDESYES+ AER  ILS
Sbjct: 352 GYMEVTGFSPDVREQIYKVASVNLCSNITGQILASLIMSPPKVGDESYESFMAERGAILS 411

Query: 421 SLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLL 480
           SL  RAK LE+A N LEG+TCNKAEGAMYLFPRI+LPEKAIKAAEAEK+ PDAFYC+RLL
Sbjct: 412 SLTTRAKALEEALNKLEGVTCNKAEGAMYLFPRIRLPEKAIKAAEAEKSAPDAFYCKRLL 471

Query: 481 NATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKFRN 533
           NATGIV+VPGSGFGQVPGTWHFRCTILPQED+IPAIVTRLT+FH+ FMD+FR+
Sbjct: 472 NATGIVVVPGSGFGQVPGTWHFRCTILPQEDRIPAIVTRLTEFHQKFMDEFRD 524

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074105|ref|XP_002304255.1| predicted protein [Populus trichocarpa] gi|222841687|gb|EEE79234.1| predicted protein [Populus trichocarpa]

 Score =  886 bits (2290), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/480 (89%), Positives = 458/480 (95%)

Query: 54  PAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQ 113
           P +++D++NPKVLKCEYAVRGEIV++AQ LQ+EL++ PGSH FDEILYCNIGNPQSLGQQ
Sbjct: 2   PPVSLDNINPKVLKCEYAVRGEIVTLAQALQEELKSKPGSHPFDEILYCNIGNPQSLGQQ 61

Query: 114 PITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLR 173
           PITFFREVLALCDHPSILDRSETQGLFSAD+IERAWQILDQIPGRATGAYSHSQGIKGLR
Sbjct: 62  PITFFREVLALCDHPSILDRSETQGLFSADAIERAWQILDQIPGRATGAYSHSQGIKGLR 121

Query: 174 DTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA 233
           DTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSE DGILCPIPQYPLYSASIA
Sbjct: 122 DTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYSASIA 181

Query: 234 LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQR 293
           LHGG LVPYYLDEATGWGLE SE+KKQL  AK+KGIT RALVVINPGNPTGQVLAE+NQR
Sbjct: 182 LHGGALVPYYLDEATGWGLEVSELKKQLADAKSKGITPRALVVINPGNPTGQVLAEDNQR 241

Query: 294 AIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYY 353
            IV+FCK+EGLVLLADEVYQENVYVPEKKF SFKKV+RSMGYGEKDISLVSFQSVSKGYY
Sbjct: 242 GIVEFCKQEGLVLLADEVYQENVYVPEKKFDSFKKVARSMGYGEKDISLVSFQSVSKGYY 301

Query: 354 GECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCA 413
           GECGKRGGYMEVTGF  E+REQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESY A
Sbjct: 302 GECGKRGGYMEVTGFGPEIREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYSA 361

Query: 414 ERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDA 473
           E+DGILSSLARRAKTLEDAFN+LE +TCNKAEGAMYLFP I LPEKAIKAAEA KT PD 
Sbjct: 362 EKDGILSSLARRAKTLEDAFNNLEAVTCNKAEGAMYLFPCICLPEKAIKAAEAAKTAPDN 421

Query: 474 FYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKFRN 533
           FYCRRLLNATGIV VPGSGFGQ+PGTWHFRCTILPQEDKIPA+V+RLT+FHK+FMD+FR+
Sbjct: 422 FYCRRLLNATGIVFVPGSGFGQLPGTWHFRCTILPQEDKIPAVVSRLTEFHKSFMDEFRD 481

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449519802|ref|XP_004166923.1| PREDICTED: alanine aminotransferase 2, mitochondrial-like, partial [Cucumis sativus]

 Score =  885 bits (2287), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/470 (88%), Positives = 445/470 (94%)

Query: 64  KVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLA 123
           +VLKCEYAVRGEIV++AQ+LQ+EL   PGSH FDEILYCNIGNPQSLGQQPITFFREVLA
Sbjct: 24  QVLKCEYAVRGEIVTLAQKLQEELSVKPGSHPFDEILYCNIGNPQSLGQQPITFFREVLA 83

Query: 124 LCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEAR 183
           LCDHP+ILD+SETQGLFS D+I RAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEAR
Sbjct: 84  LCDHPAILDKSETQGLFSTDAIARAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEAR 143

Query: 184 DGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYY 243
           DG+PADPND FLTDGASPAVHMMMQLLIRSE DGILCPIPQYPLYSASIALHGGTLVPYY
Sbjct: 144 DGYPADPNDFFLTDGASPAVHMMMQLLIRSEGDGILCPIPQYPLYSASIALHGGTLVPYY 203

Query: 244 LDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEG 303
           LDEATGWGLETSE+KKQLEAAK+KGI VRALVVINPGNPTGQVLAE+NQR IV+FCK+EG
Sbjct: 204 LDEATGWGLETSELKKQLEAAKSKGINVRALVVINPGNPTGQVLAEDNQRQIVEFCKQEG 263

Query: 304 LVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYM 363
           LVLLADEVYQEN+Y P+KKFHSFKK+SRSMGYG +DI+LVSFQSVSKGYYGECGKRGGYM
Sbjct: 264 LVLLADEVYQENIYAPDKKFHSFKKISRSMGYGNEDIALVSFQSVSKGYYGECGKRGGYM 323

Query: 364 EVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLA 423
           EVTGFS E+REQIYKVASVNLCSNISGQILASLVM+PPKVGDES+ESY AE+DGILSSL 
Sbjct: 324 EVTGFSPEIREQIYKVASVNLCSNISGQILASLVMNPPKVGDESFESYSAEKDGILSSLE 383

Query: 424 RRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNAT 483
           RRAK LEDA NSLEG+ CNKAEGAMYLFPRI LP KAIKAAEA  T PD FYCRRLLNAT
Sbjct: 384 RRAKALEDALNSLEGVECNKAEGAMYLFPRIYLPAKAIKAAEAVNTSPDTFYCRRLLNAT 443

Query: 484 GIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKFRN 533
           GIV+VPGSGFGQVPGTWHFRCTILPQEDKIPAIV+RLT+FHK FM++FR+
Sbjct: 444 GIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAIVSRLTEFHKQFMEEFRD 493

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|355755168|gb|AET06148.1| PLP-dependent aminotransferase [Papaver somniferum]

 Score =  885 bits (2286), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/479 (86%), Positives = 451/479 (94%)

Query: 55  AITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQP 114
           ++T+DS+NPKVL+CEYAVRG IV+ AQ+LQ+E++ NPGSH FDEILYCNIGNPQSLGQQP
Sbjct: 6   SVTIDSINPKVLQCEYAVRGAIVNQAQKLQEEIKENPGSHPFDEILYCNIGNPQSLGQQP 65

Query: 115 ITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRD 174
           ITFFREVLALCDHP ILD+SETQGLFSADSIERAWQILDQ+PGRATGAYSHSQG+K LRD
Sbjct: 66  ITFFREVLALCDHPVILDKSETQGLFSADSIERAWQILDQMPGRATGAYSHSQGVKCLRD 125

Query: 175 TIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL 234
            +AAGI ARDGFPADPNDIFLTDGASPAVHMMMQLLI SE DG+LCPIPQYPLYSASIAL
Sbjct: 126 AVAAGIAARDGFPADPNDIFLTDGASPAVHMMMQLLISSEKDGVLCPIPQYPLYSASIAL 185

Query: 235 HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRA 294
           HGG+LVPYYLDEATGWGLE SE+KKQLE AK+KGITVR+LVVINPGNPTGQVLAEENQRA
Sbjct: 186 HGGSLVPYYLDEATGWGLEVSELKKQLEDAKSKGITVRSLVVINPGNPTGQVLAEENQRA 245

Query: 295 IVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYG 354
           IV+FCKKE LVLLADEVYQENVYV +K FHSFKKV+RSMGYGEKDISLVSFQSVSKGY+G
Sbjct: 246 IVEFCKKENLVLLADEVYQENVYVEDKSFHSFKKVARSMGYGEKDISLVSFQSVSKGYHG 305

Query: 355 ECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAE 414
           ECGKRGGYMEVTGFS EVREQIYKVASVNLCSNISGQILASLVM+PPKVGDES+ESY AE
Sbjct: 306 ECGKRGGYMEVTGFSPEVREQIYKVASVNLCSNISGQILASLVMNPPKVGDESFESYSAE 365

Query: 415 RDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAF 474
           ++GILSSLARRAK LEDAFN+LEG+TCNKAEGAMYLFPRI L +KAIKAAE  KT PDAF
Sbjct: 366 KNGILSSLARRAKALEDAFNNLEGVTCNKAEGAMYLFPRIHLSQKAIKAAETAKTAPDAF 425

Query: 475 YCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKFRN 533
           Y +RLL ATGIV+VPGSGFGQVPGTWH RCTILPQE+KIPAI+TRLTDFH+ FM +FR+
Sbjct: 426 YAKRLLEATGIVVVPGSGFGQVPGTWHIRCTILPQEEKIPAIITRLTDFHQAFMAEFRD 484

Source: Papaver somniferum

Species: Papaver somniferum

Genus: Papaver

Family: Papaveraceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	533
TAIR|locus:2195808	543	AlaAT1 "alanine aminotransfera	0.893	0.876	0.817	2.5e-216
DICTYBASE|DDB_G0285899	534	DDB_G0285899 "glutamate pyruva	0.889	0.887	0.512	1.2e-129
TAIR|locus:2028000	481	GGT1 "glutamate:glyoxylate ami	0.872	0.966	0.516	4.8e-126
TAIR|locus:2026841	481	AOAT2 "alanine-2-oxoglutarate	0.868	0.962	0.506	1.3e-123
SGD|S000004079	592	ALT1 "Alanine transaminase (gl	0.879	0.792	0.470	2.9e-112
ZFIN|ZDB-GENE-050302-11	566	gpt2l "glutamic pyruvate trans	0.876	0.825	0.470	9.7e-112
UNIPROTKB|F1RSP5	496	GPT "Alanine aminotransferase	0.868	0.933	0.485	2e-111
MGI|MGI:1915391	522	Gpt2 "glutamic pyruvate transa	0.878	0.896	0.456	2e-111
RGD|621720	496	Gpt "glutamic-pyruvate transam	0.876	0.941	0.479	2e-111
SGD|S000002518	507	ALT2 "Catalytically inactive p	0.878	0.923	0.468	2.6e-111

TAIR|locus:2195808 AlaAT1 "alanine aminotransferas" [Arabidopsis thaliana (taxid:3702)]

 Score = 2090 (740.8 bits), Expect = 2.5e-216, P = 2.5e-216
 Identities = 389/476 (81%), Positives = 435/476 (91%)

Query:    58 VDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITF 117
             +D++NPKV+KCEYAVRGEIV+IAQ+LQ++L+TN  ++ FDEI+YCNIGNPQSLGQQPITF
Sbjct:    68 LDTINPKVIKCEYAVRGEIVNIAQKLQEDLKTNKDAYPFDEIIYCNIGNPQSLGQQPITF 127

Query:   118 FREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA 177
             FREVLALC + ++LD S T GLFS+DSIERAW+ILDQIPGRATGAYSHSQGIKGLRD IA
Sbjct:   128 FREVLALCSYTALLDESATHGLFSSDSIERAWKILDQIPGRATGAYSHSQGIKGLRDAIA 187

Query:   178 AGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGG 237
              GIEARDGFPADPNDIF+TDGASP VHMMMQLLI SE DGILCPIPQYPLYSASIALHGG
Sbjct:   188 DGIEARDGFPADPNDIFMTDGASPGVHMMMQLLITSEKDGILCPIPQYPLYSASIALHGG 247

Query:   238 TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD 297
             TLVPYYLDEA+GWGLE SE+KKQLE A++KGITVRAL VINPGNPTGQVL+EENQR +V 
Sbjct:   248 TLVPYYLDEASGWGLEISELKKQLEDARSKGITVRALAVINPGNPTGQVLSEENQRDVVK 307

Query:   298 FCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG 357
             FCK+EGLVLLADEVYQENVYVP+KKFHSFKKV+RSMGYGEKD++LVSFQSVSKGYYGECG
Sbjct:   308 FCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDLALVSFQSVSKGYYGECG 367

Query:   358 KRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDG 417
             KRGGYMEVTGF+++VREQIYK+ASVNLCSNISGQILASL+MSPPK GD+SYESY AE+DG
Sbjct:   368 KRGGYMEVTGFTSDVREQIYKMASVNLCSNISGQILASLIMSPPKPGDDSYESYIAEKDG 427

Query:   418 ILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXXTVPDAFYCR 477
             ILSSLARRAKTLE+A N LEG+TCN+AEGAMYLFP + LP           T PD FYC+
Sbjct:   428 ILSSLARRAKTLEEALNKLEGVTCNRAEGAMYLFPCLHLPQKAIAAAEAEKTAPDNFYCK 487

Query:   478 RLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKFRN 533
             RLL ATGIV+VPGSGF QVPGTWHFRCTILPQEDKIPAIV RLT FH++FMD+FR+
Sbjct:   488 RLLKATGIVVVPGSGFRQVPGTWHFRCTILPQEDKIPAIVDRLTAFHQSFMDEFRD 543

GO:0003824 "catalytic activity" evidence=IEA

GO:0004021 "L-alanine:2-oxoglutarate aminotransferase activity" evidence=ISS;IDA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016847 "1-aminocyclopropane-1-carboxylate synthase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0042218 "1-aminocyclopropane-1-carboxylate biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005524 "ATP binding" evidence=IDA

GO:0001666 "response to hypoxia" evidence=IEP

GO:0019481 "L-alanine catabolic process, by transamination" evidence=IMP

GO:0005829 "cytosol" evidence=RCA

DICTYBASE|DDB_G0285899 DDB_G0285899 "glutamate pyruvate transaminase" [Dictyostelium discoideum (taxid:44689)]

 Score = 1272 (452.8 bits), Expect = 1.2e-129, P = 1.2e-129
 Identities = 246/480 (51%), Positives = 333/480 (69%)

Query:    58 VDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNP--GSHS--FDEILYCNIGNPQSLGQQ 113
             +D++   V   +YAVRGE+V  A+ +  +LQ     G+ +  F+EI+YCNIGNPQ L Q+
Sbjct:    56 IDNICQNVRNAQYAVRGELVIRAEAISHQLQKQKTEGTKTLPFEEIVYCNIGNPQQLKQK 115

Query:   114 PITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLR 173
             P+T+FR+V++L + P +LD    + ++ AD I RA +IL  I    TGAYS+SQGI  + 
Sbjct:   116 PLTYFRQVVSLVECPDLLDNPYVEKIYPADVISRAKEILGSI-NNTTGAYSNSQGIGLVL 174

Query:   174 DTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA 233
              ++A  IE RDG  +DP++IFLTDGAS  V  +++LLI+  +DGIL PIPQYPLYSA+I 
Sbjct:   175 RSVADFIERRDGHKSDPSEIFLTDGASVGVQRILKLLIKDRSDGILIPIPQYPLYSATIE 234

Query:   234 LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQR 293
             L+ G+ + Y L+E  GW LE S+++     A +KGI  RALV+INPGNPTGQ L   N  
Sbjct:   235 LYNGSQLGYLLNEEKGWSLEISQLEHSYNDAVSKGINPRALVIINPGNPTGQCLDRANME 294

Query:   294 AIVDFCKKEGLVLLADEVYQENVYVPEKK-FHSFKKVSRSMGYGEKDISLVSFQSVSKGY 352
              IV FC ++ +VLLADEVYQENVYV E K F SFKKV + MG    D+ +VSF SVSKG+
Sbjct:   295 EIVKFCLEKNVVLLADEVYQENVYVKESKPFISFKKVVKDMGGDYADLEMVSFHSVSKGF 354

Query:   353 YGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYC 412
              GECGKRGGYME+ G + +V+ +IYK+AS+ LC N+ GQ++  L++ PP  G++S++ Y 
Sbjct:   355 VGECGKRGGYMELNGVTQDVKAEIYKLASIGLCPNVIGQLVVDLMVRPPVAGEQSHDLYL 414

Query:   413 AERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXXTVPD 472
              ERD I  SL +RA  L +A N+LEG+TCN +EGAMY FP+I+LP             PD
Sbjct:   415 KERDNIYESLKKRANLLTNALNNLEGVTCNPSEGAMYAFPQIRLPAKAVEYANSIGKAPD 474

Query:   473 AFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKFR 532
             A+YC +LL ATGI +VPGSGFGQ  GTWHFR T LP E+ I  +  R+ DFH++FM+K++
Sbjct:   475 AYYCIQLLEATGICVVPGSGFGQKDGTWHFRTTFLPSEEAIEGVCKRIADFHQSFMNKYK 534

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004021 "L-alanine:2-oxoglutarate aminotransferase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016740 "transferase activity" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0042853 "L-alanine catabolic process" evidence=IEA

TAIR|locus:2028000 GGT1 "glutamate:glyoxylate aminotransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 1238 (440.9 bits), Expect = 4.8e-126, P = 4.8e-126
 Identities = 246/476 (51%), Positives = 319/476 (67%)

Query:    59 DSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFF 118
             D+LN  V KC+YAVRGE+   A  LQ+E     G     +I++ N+GNP +LGQ+P+TF 
Sbjct:     9 DTLNENVKKCQYAVRGELYLRASELQKE-----GK----KIIFTNVGNPHALGQKPLTFP 59

Query:   119 REVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA 178
             R+V+ALC  P +LD      LF AD+I RA   L    G   GAYS S+G+ G+R  +A 
Sbjct:    60 RQVVALCQAPFLLDDPNVGMLFPADAIARAKHYLSLTSG-GLGAYSDSRGLPGVRKEVAE 118

Query:   179 GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGT 238
              I+ RDG+P+DP  IFLTDGAS  V  ++  +IR   DGIL P+PQYPLYSA+I+L GGT
Sbjct:   119 FIQRRDGYPSDPELIFLTDGASKGVMQILNCVIRGNGDGILVPVPQYPLYSATISLLGGT 178

Query:   239 LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF 298
             LVPYYLDE+  WGL+ + +++ +  A+++GITVRA+V+INPGNPTGQ L+E N R I+ F
Sbjct:   179 LVPYYLDESENWGLDVANLRQSVAQARSQGITVRAMVIINPGNPTGQCLSEANIREILKF 238

Query:   299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG-EKDISLVSFQSVSKGYYGECG 357
             C  E LVLL DEVYQ+N+Y  E+ F S KKV   MG    K++ LVSF +VSKGY+GECG
Sbjct:   239 CYNEKLVLLGDEVYQQNIYQDERPFISSKKVLMEMGSPFSKEVQLVSFHTVSKGYWGECG 298

Query:   358 KRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDG 417
             +RGGY E+T     V E+IYKVAS+ L  N+S QI   L+++PPK GD SY+ +  E  G
Sbjct:   299 QRGGYFEMTNLPPRVVEEIYKVASIALSPNVSAQIFMGLMVNPPKPGDISYDQFARESKG 358

Query:   418 ILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXXTVPDAFYCR 477
             IL SL RRA+ + D FNS + + CN  EGAMY FP+I+LP            VPD FYC 
Sbjct:   359 ILESLRRRARLMTDGFNSCKNVVCNFTEGAMYSFPQIRLPTGALQAAKQAGKVPDVFYCL 418

Query:   478 RLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKFRN 533
             +LL ATGI  VPGSGFGQ  G +H R TILP ED++P I+     F+  FM ++ N
Sbjct:   419 KLLEATGISTVPGSGFGQKEGVFHLRTTILPAEDEMPEIMDSFKKFNDEFMTQYDN 474

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009853 "photorespiration" evidence=RCA;IMP;TAS

GO:0016740 "transferase activity" evidence=IEA

GO:0016847 "1-aminocyclopropane-1-carboxylate synthase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0042218 "1-aminocyclopropane-1-carboxylate biosynthetic process" evidence=IEA

GO:0005777 "peroxisome" evidence=IDA

GO:0004021 "L-alanine:2-oxoglutarate aminotransferase activity" evidence=IMP;IDA

GO:0008453 "alanine-glyoxylate transaminase activity" evidence=IDA

GO:0047958 "glycine:2-oxoglutarate aminotransferase activity" evidence=IMP;IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0001666 "response to hypoxia" evidence=IEP

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

GO:0044242 "cellular lipid catabolic process" evidence=RCA

TAIR|locus:2026841 AOAT2 "alanine-2-oxoglutarate aminotransferase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1215 (432.8 bits), Expect = 1.3e-123, P = 1.3e-123
 Identities = 240/474 (50%), Positives = 317/474 (66%)

Query:    59 DSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFF 118
             +SLN  V  C+YAVRGE+   A  LQ+E     G     +I++ N+GNP +LGQ+P+TF 
Sbjct:     9 ESLNENVKNCQYAVRGELYLRASELQKE-----GK----KIIFTNVGNPHALGQKPLTFP 59

Query:   119 REVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA 178
             R+V++LC  P +LD      +F AD+I RA   L    G   GAYS S+G+ G+R  +A 
Sbjct:    60 RQVVSLCQAPFLLDDPNVGMIFPADAIARAKHYLSLTSG-GLGAYSDSRGLPGVRKEVAE 118

Query:   179 GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGT 238
              IE RDG+P+DP  IFLTDGAS  V  ++  +IR + DGIL P+PQYPLYSA+I+L GGT
Sbjct:   119 FIERRDGYPSDPELIFLTDGASKGVMQILNCVIRGQKDGILVPVPQYPLYSATISLLGGT 178

Query:   239 LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF 298
             LVPYYL+E+  WGL+ + +++ +  A+++GITVRA+V+INPGNPTGQ L+E N R I+ F
Sbjct:   179 LVPYYLEESENWGLDVNNLRQSVAQARSQGITVRAMVIINPGNPTGQCLSEANIREILRF 238

Query:   299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG-EKDISLVSFQSVSKGYYGECG 357
             C  E LVLL DEVYQ+N+Y  E+ F S KKV   MG    K++ L+SF +VSKGY+GECG
Sbjct:   239 CCDERLVLLGDEVYQQNIYQDERPFISSKKVLMDMGAPISKEVQLISFHTVSKGYWGECG 298

Query:   358 KRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDG 417
             +RGGY E+T       E+IYKVAS+ L  N+S QI   L++SPPK GD SY+ +  E  G
Sbjct:   299 QRGGYFEMTNIPPRTVEEIYKVASIALSPNVSAQIFMGLMVSPPKPGDISYDQFVRESKG 358

Query:   418 ILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXXTVPDAFYCR 477
             IL SL RRA+ + D FNS + + CN  EGAMY FP+I+LP            VPD FYC 
Sbjct:   359 ILESLRRRARMMTDGFNSCKNVVCNFTEGAMYSFPQIKLPSKAIQAAKQAGKVPDVFYCL 418

Query:   478 RLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKF 531
             +LL ATGI  VPGSGFGQ  G +H R TILP E+++P I+     F+  FM ++
Sbjct:   419 KLLEATGISTVPGSGFGQKEGVFHLRTTILPAEEEMPEIMDSFKKFNDEFMSQY 472

GO:0003824 "catalytic activity" evidence=IEA

GO:0004021 "L-alanine:2-oxoglutarate aminotransferase activity" evidence=ISS;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009853 "photorespiration" evidence=ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0016847 "1-aminocyclopropane-1-carboxylate synthase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0042218 "1-aminocyclopropane-1-carboxylate biosynthetic process" evidence=IEA

GO:0005777 "peroxisome" evidence=ISS;IDA

GO:0008453 "alanine-glyoxylate transaminase activity" evidence=IDA

GO:0047958 "glycine:2-oxoglutarate aminotransferase activity" evidence=ISS;IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

SGD|S000004079 ALT1 "Alanine transaminase (glutamic pyruvic transaminase)" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 1108 (395.1 bits), Expect = 2.9e-112, P = 2.9e-112
 Identities = 229/487 (47%), Positives = 315/487 (64%)

Query:    58 VDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITF 117
             ++ +N  VLK +YAVRG I   A+ L+ +L+ +P S  FD I+  NIGNPQ L Q+P+T+
Sbjct:   113 LEDVNENVLKAKYAVRGAIPMRAEELKAQLEKDPQSLPFDRIINANIGNPQQLQQKPLTY 172

Query:   118 FREVLALCDHPSILDRSETQ----GLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLR 173
             +R+VL+L  +P +L+++E Q     LF  D+I+RA  +++ I G + GAYS SQG++G+R
Sbjct:   173 YRQVLSLLQYPELLNQNEQQLVDSKLFKLDAIKRAKSLMEDIGG-SVGAYSSSQGVEGIR 231

Query:   174 DTIAAGIEARD-GFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI 232
              ++A  I  RD G  + P DIFLT GAS AV+ ++ +  R    G+L PIPQYPLY+A++
Sbjct:   232 KSVAEFITKRDEGEISYPEDIFLTAGASAAVNYLLSIFCRGPETGVLIPIPQYPLYTATL 291

Query:   233 ALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQ 292
             AL+    +PYYLDE +GW     E++  ++ A    I    LVVINPGNPTG VL+ E+ 
Sbjct:   292 ALNNSQALPYYLDENSGWSTNPEEIETVVKEAIQNEIKPTVLVVINPGNPTGAVLSPESI 351

Query:   293 RAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY---GEKD-ISLVSFQSV 348
               I +   K G V++ADEVYQEN++ P  KFHS KK+ R +     G+ D + L S  S 
Sbjct:   352 AQIFEVAAKYGTVVIADEVYQENIF-PGTKFHSMKKILRHLQREHPGKFDNVQLASLHST 410

Query:   349 SKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESY 408
             SKG  GECG+RGGYME+TGFS E+R+ I K+AS++LC  ++GQ L  L++ PP  G+ES+
Sbjct:   411 SKGVSGECGQRGGYMELTGFSHEMRQVILKLASISLCPVVTGQALVDLMVRPPVEGEESF 470

Query:   409 ESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXX 468
             ES  AER+ I   L  RA TL + FNSLEGI C K +GAMYLFP+I LP           
Sbjct:   471 ESDQAERNSIHEKLITRAMTLYETFNSLEGIECQKPQGAMYLFPKIDLPFKAVQEARHLE 530

Query:   469 TVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAI--VTRLTDFHKN 526
               PD FYC++LL +TGI  VPGSGFGQ PGT+H R T L      P +  + +   FHK 
Sbjct:   531 LTPDEFYCKKLLESTGICTVPGSGFGQEPGTYHLRTTFLA-----PGLEWIKKWESFHKE 585

Query:   527 FMDKFRN 533
             F D++R+
Sbjct:   586 FFDQYRD 592

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0042853 "L-alanine catabolic process" evidence=IEA

GO:0004021 "L-alanine:2-oxoglutarate aminotransferase activity" evidence=IEA;IMP

GO:0006523 "alanine biosynthetic process" evidence=IMP

GO:0006524 "alanine catabolic process" evidence=IMP

GO:0016740 "transferase activity" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

ZFIN|ZDB-GENE-050302-11 gpt2l "glutamic pyruvate transaminase (alanine aminotransferase) 2, like" [Danio rerio (taxid:7955)]

 Score = 1103 (393.3 bits), Expect = 9.7e-112, P = 9.7e-112
 Identities = 226/480 (47%), Positives = 308/480 (64%)

Query:    58 VDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITF 117
             VD++N  V K +YAVRG IV  A ++++EL+       FDE++  NIG+  ++GQ+PITF
Sbjct:    93 VDTMNANVKKVDYAVRGPIVQRAVQIEKELKEGV-KKPFDEVIKANIGDAHAMGQRPITF 151

Query:   118 FREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA 177
             FR+V+ALC +P +LD ++    F  D+  RA +IL    G + GAY+ SQGI  +R  +A
Sbjct:   152 FRQVMALCTYPQLLDDNK----FPEDAKNRARRILQSCGGNSIGAYTTSQGIDCVRQDVA 207

Query:   178 AGIEARDG-FPADPNDIFLTDGASPAVHMMMQLLIRSEN---DGILCPIPQYPLYSASIA 233
               IE RDG  P+DP++I+LT GAS  +  +++LL   E     G++  IPQYPLYSASIA
Sbjct:   208 KYIERRDGGIPSDPDNIYLTTGASDGIVTILKLLTAGEGLTRTGVMISIPQYPLYSASIA 267

Query:   234 LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQR 293
               G   + YYL+E   W L+ SE+++ L+AA+ K    R L +INPGNPTGQV + +   
Sbjct:   268 ELGAVQINYYLNEEKCWSLDISELQRSLQAAR-KHCNPRVLCIINPGNPTGQVQSRQCIE 326

Query:   294 AIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG--YGEKDISLVSFQSVSKG 351
              ++ F  KE L L+ADEVYQ+NVY    +FHSFKKV   MG  Y +K + L SF S SK 
Sbjct:   327 DVIQFAAKENLFLMADEVYQDNVYAKGCEFHSFKKVLFEMGPEYSKK-VELASFHSTSKC 385

Query:   352 YYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESY 411
             Y GECG RGGYMEV    A+V+ Q+ K+ SV LC    GQ L  LV++PP+ G+ S++++
Sbjct:   386 YMGECGFRGGYMEVINMDADVKAQLTKLVSVRLCPPAPGQALMDLVVNPPQPGEPSHQTF 445

Query:   412 CAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXXTVP 471
               ER  +LS+LA +AK  E   N++ GI+CN  +GAMY FPRI LP             P
Sbjct:   446 MQERTAVLSALAEKAKLTEQILNTVPGISCNPVQGAMYSFPRITLPERAISEAKAKGQAP 505

Query:   472 DAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKF 531
             D FYC +LL  TGI LVPGSGFGQ  GT+HFR TILP  DK+  ++ +L DFH+ F  ++
Sbjct:   506 DMFYCMKLLEETGICLVPGSGFGQREGTYHFRMTILPPTDKLKLMLNKLKDFHQRFTQQY 565

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0004021 "L-alanine:2-oxoglutarate aminotransferase activity" evidence=IEA;ISS

GO:0006103 "2-oxoglutarate metabolic process" evidence=ISS

GO:0042851 "L-alanine metabolic process" evidence=ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

UNIPROTKB|F1RSP5 GPT "Alanine aminotransferase 1" [Sus scrofa (taxid:9823)]

 Score = 1100 (392.3 bits), Expect = 2.0e-111, P = 2.0e-111
 Identities = 231/476 (48%), Positives = 301/476 (63%)

Query:    58 VDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITF 117
             +DS+NP V + EYAVRG IV  A  L+QEL+       F E++  NIG+ Q++GQ+PITF
Sbjct:    23 LDSMNPCVQRVEYAVRGPIVLRALELEQELRQGV-KKPFTEVIRANIGDAQAMGQKPITF 81

Query:   118 FREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA 177
              R+VLALC HP +L+ ++    F  D+  RA +IL    G + GAYS S GI+ +R+ +A
Sbjct:    82 LRQVLALCIHPDLLNSAD----FPEDAKRRAQRILQACGGHSLGAYSISPGIQMIREDVA 137

Query:   178 AGIEARDG-FPADPNDIFLTDGASPAVHMMMQLLIRSEN---DGILCPIPQYPLYSASIA 233
               IE RDG  PADPN+IFL+ GAS A+  +++LL+  E     G+L PIPQYPLYSA++A
Sbjct:   138 RYIERRDGGIPADPNNIFLSTGASDAIVTVLKLLVFGEGRTRTGVLIPIPQYPLYSAALA 197

Query:   234 LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQR 293
                   V YYLDE   W L+ +E+++ L  A+      RAL VINPGNPTGQV   E   
Sbjct:   198 ELNAVQVDYYLDEERAWALDVAELRRALRQARDH-CRPRALCVINPGNPTGQVQTRECIE 256

Query:   294 AIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG--YGEKDISLVSFQSVSKG 351
             A++ F  +EGL LLADEVYQ+NVY    +FHSFKKV   MG  Y  +   L SF SVSKG
Sbjct:   257 AVIRFAYEEGLFLLADEVYQDNVYAEGSQFHSFKKVLTEMGPPYAARQ-ELASFHSVSKG 315

Query:   352 YYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESY 411
             + GECG RGGY+EV    A V++Q+ K+ SV LC    GQ+L   V+SPP   D S+  +
Sbjct:   316 FMGECGFRGGYVEVVNMDAAVQQQMQKLRSVRLCPPTPGQVLLDAVLSPPAPSDPSFAQF 375

Query:   412 CAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXXTVP 471
              AE+  +L+ LA +AK  E  FN   GI CN  +GAMY FPR+QLP             P
Sbjct:   376 QAEKREVLAELAAKAKLTEQVFNEAPGIHCNPVQGAMYSFPRVQLPPRAVQRAQELGLAP 435

Query:   472 DAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNF 527
             D F+C RLL  TGI +VPGSGFGQ  GT+HFR TILP  +K+  ++ +L+ FH  F
Sbjct:   436 DMFFCMRLLEETGICVVPGSGFGQREGTYHFRMTILPPMEKLRPLLEKLSQFHAKF 491

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

MGI|MGI:1915391 Gpt2 "glutamic pyruvate transaminase (alanine aminotransferase) 2" [Mus musculus (taxid:10090)]

 Score = 1100 (392.3 bits), Expect = 2.0e-111, P = 2.0e-111
 Identities = 218/478 (45%), Positives = 304/478 (63%)

Query:    58 VDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITF 117
             ++S+NP+V   EYAVRG IV  A  ++ ELQ       F E++  NIG+  ++GQQPITF
Sbjct:    50 LESMNPQVKAVEYAVRGPIVLKAGEIEMELQRGI-KKPFTEVIRANIGDAHAMGQQPITF 108

Query:   118 FREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA 177
              R+V+ALC +P++L+       F  D+ +RA +IL    G + G+YS SQG+  +R+ +A
Sbjct:   109 LRQVMALCTYPNLLNSPS----FPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVA 164

Query:   178 AGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS---ENDGILCPIPQYPLYSASIAL 234
             A I  RDG PADP++I+LT GAS  +  +++LL+        G++ PIPQYPLYSA I+ 
Sbjct:   165 AFITRRDGVPADPDNIYLTTGASDGISTILKLLVSGGGKSRTGVMIPIPQYPLYSAVISE 224

Query:   235 HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRA 294
                  V YYLDE   W L   E+++ L  AK      + L +INPGNPTGQV + +    
Sbjct:   225 LDAVQVNYYLDEENCWALNVDELRRALRQAKDH-CDPKVLCIINPGNPTGQVQSRKCIED 283

Query:   295 IVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG-EKDISLVSFQSVSKGYY 353
             ++ F  +E L LLADEVYQ+NVY P+ +FHSFKKV   MG+    ++ L SF S SKGY 
Sbjct:   284 VIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYQMGHEYSSNVELASFHSTSKGYM 343

Query:   354 GECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCA 413
             GECG RGGYMEV     E++ Q+ K+ SV LC  +SGQ    +V++PP+ G+ES+E +  
Sbjct:   344 GECGYRGGYMEVINLHPEIKGQLVKLLSVRLCPPVSGQAAMDIVVNPPEPGEESFEQFSR 403

Query:   414 ERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXXTVPDA 473
             E++ +L +LA++AK  ED FN + GI CN  +GAMY FPRI +P             PD 
Sbjct:   404 EKEFVLGNLAKKAKLTEDLFNQVPGIQCNPLQGAMYAFPRILIPAKAVEAAQSHKMAPDM 463

Query:   474 FYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKF 531
             FYC +LL  TGI +VPGSGFGQ  GT+HFR TILP  DK+  ++ ++ DFH  F++++
Sbjct:   464 FYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPVDKLKTVLHKVKDFHLKFLEQY 521

GO:0003824 "catalytic activity" evidence=IEA

GO:0004021 "L-alanine:2-oxoglutarate aminotransferase activity" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0006103 "2-oxoglutarate metabolic process" evidence=ISO

GO:0008483 "transaminase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0042851 "L-alanine metabolic process" evidence=ISO

RGD|621720 Gpt "glutamic-pyruvate transaminase (alanine aminotransferase)" [Rattus norvegicus (taxid:10116)]

 Score = 1100 (392.3 bits), Expect = 2.0e-111, P = 2.0e-111
 Identities = 230/480 (47%), Positives = 305/480 (63%)

Query:    58 VDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITF 117
             +D++NP V + EYAVRG IV  A  L+QEL+       F E++  NIG+ Q++GQ+PITF
Sbjct:    23 LDTMNPCVRRVEYAVRGPIVQRALELEQELRQGV-KKPFTEVIRANIGDAQAMGQRPITF 81

Query:   118 FREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA 177
             FR+VLALC +P++L   +    F  D+  RA +IL    G + GAYS S GI+ +R+ +A
Sbjct:    82 FRQVLALCVYPNLLSSPD----FPEDAKRRAERILQACGGHSLGAYSISSGIQPIREDVA 137

Query:   178 AGIEARDG-FPADPNDIFLTDGASPAVHMMMQLLIRSEN---DGILCPIPQYPLYSASIA 233
               IE RDG  PADPN+IFL+ GAS A+  M++LL+  E     G+L PIPQYPLYSA++A
Sbjct:   138 QYIERRDGGIPADPNNIFLSTGASDAIVTMLKLLVSGEGRARTGVLIPIPQYPLYSAALA 197

Query:   234 LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQR 293
                   V YYLDE   W L+ +E+++ L  A+ +    R L VINPGNPTGQV   E   
Sbjct:   198 ELDAVQVDYYLDEERAWALDIAELRRALCQARDR-CCPRVLCVINPGNPTGQVQTRECIE 256

Query:   294 AIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG--YGEKDISLVSFQSVSKG 351
             A++ F  KEGL L+ADEVYQ+NVY    +FHSFKKV   MG  Y  +   L SF SVSKG
Sbjct:   257 AVIRFAFKEGLFLMADEVYQDNVYAEGSQFHSFKKVLMEMGPPYSTQQ-ELASFHSVSKG 315

Query:   352 YYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESY 411
             Y GECG RGGY+EV    AEV++Q+ K+ SV LC  + GQ L  +V+SPP   + S++ +
Sbjct:   316 YMGECGFRGGYVEVVNMDAEVQKQMGKLMSVRLCPPVPGQALMDMVVSPPTPSEPSFKQF 375

Query:   412 CAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXXTVP 471
              AER  +L+ LA +AK  E  FN   GI CN  +GAMY FP++QLP             P
Sbjct:   376 QAERQEVLAELAAKAKLTEQVFNEAPGIRCNPVQGAMYSFPQVQLPLKAVQRAQELGLAP 435

Query:   472 DAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKF 531
             D F+C  LL  TGI +VPGSGFGQ  GT+HFR TILP  +K+  ++ +L+ FH  F  ++
Sbjct:   436 DMFFCLCLLEETGICVVPGSGFGQQEGTYHFRMTILPPMEKLRLLLEKLSHFHAKFTHEY 495

GO:0004021 "L-alanine:2-oxoglutarate aminotransferase activity" evidence=ISO;NAS

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0009058 "biosynthetic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=NAS

GO:0042853 "L-alanine catabolic process" evidence=IEA

SGD|S000002518 ALT2 "Catalytically inactive paralog of ALT1, an alanine transaminase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 1099 (391.9 bits), Expect = 2.6e-111, P = 2.6e-111
 Identities = 226/482 (46%), Positives = 305/482 (63%)

Query:    61 LNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFRE 120
             LN  V K EYAVRG I + A  L++EL+ NP    FD+I+  NIGNPQ L Q+P+TF R+
Sbjct:    31 LNTGVTKAEYAVRGAIPTRADELKEELKKNPEVLPFDDIINANIGNPQQLDQKPLTFTRQ 90

Query:   121 VLALCDHPSILDRSETQ----GLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI 176
             VLA+ ++P IL     +     LFS D++ERA ++L+ I G + GAYSHSQG+ G+R T+
Sbjct:    91 VLAILEYPEILRVGHNELASLNLFSRDALERAERLLNDIGG-SIGAYSHSQGVPGIRQTV 149

Query:   177 AAGIEARDGF-PADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALH 235
             A  I  RDG  PA P DI+LT GAS A   ++ LL +    G+L PIPQYPLY+AS +L 
Sbjct:   150 ADFITRRDGGEPATPEDIYLTTGASSAATSLLSLLCKDSQTGLLIPIPQYPLYTASASLF 209

Query:   236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAI 295
                ++PYYLDE + W   + E++K ++ A  K I    L+VINPGNPTG VL+EE    I
Sbjct:   210 NAQVLPYYLDEESNWSTNSDEIEKVVQDALKKQIRPSVLIVINPGNPTGAVLSEETIARI 269

Query:   296 VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY---GEKD-ISLVSFQSVSKG 351
                  K G+ +++DEVYQEN++  + KFHS KKV R + +   G+ D + L S  S+SKG
Sbjct:   270 CLIAAKYGITIISDEVYQENIF-NDVKFHSMKKVLRKLQHLYPGKFDNVQLASLHSISKG 328

Query:   352 YYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESY 411
             +  ECG+RGGYME+ GFS E+R+ ++K+ S+++CS ++GQ +  L++ PP+ GDESYE  
Sbjct:   329 FMDECGQRGGYMEIIGFSQEIRDALFKLMSISICSVVTGQAVVDLMVKPPQPGDESYEQD 388

Query:   412 CAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXXTVP 471
               ER  I   +  RA  L + F  LEGI C K +GAMYLFPR+ LP             P
Sbjct:   389 HDERLKIFHEMRTRANLLYETFKELEGIECQKPQGAMYLFPRLVLPKKALCESERLGIEP 448

Query:   472 DAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKF 531
             D FYC  LL +TGI  VPGSGFGQ PGT+H R T L    K    +    +FH++F  K+
Sbjct:   449 DEFYCTSLLESTGICTVPGSGFGQRPGTYHVRTTFLAPGTKW---IQDWKEFHQDFFSKY 505

Query:   532 RN 533
             RN
Sbjct:   506 RN 507

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0003824 "catalytic activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0004021 "L-alanine:2-oxoglutarate aminotransferase activity" evidence=IEA;IGI

GO:0009058 "biosynthetic process" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0042853 "L-alanine catabolic process" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P52894	ALA2_HORVU	2, ., 6, ., 1, ., 2	0.7907	0.8968	0.9917	N/A	no
P34106	ALA2_PANMI	2, ., 6, ., 1, ., 2	0.7991	0.8968	0.9917	N/A	no
A4IFH5	ALAT1_BOVIN	2, ., 6, ., 1, ., 2	0.4792	0.8799	0.9455	yes	no
Q9LDV4	ALAT2_ARATH	2, ., 6, ., 1, ., -	0.7926	0.9906	0.9777	yes	no
Q8TD30	ALAT2_HUMAN	2, ., 6, ., 1, ., 2	0.4677	0.8818	0.8986	yes	no
Q54MJ7	ALAM_DICDI	2, ., 6, ., 1, ., 2	0.5133	0.9024	0.9007	yes	no
F4I7I0	ALAT1_ARATH	2, ., 6, ., 1, ., -	0.7641	0.9924	0.9742	no	no
Q8BGT5	ALAT2_MOUSE	2, ., 6, ., 1, ., 2	0.4642	0.8930	0.9118	yes	no
Q10334	ALAT_SCHPO	2, ., 6, ., 1, ., 2	0.4377	0.8761	0.9247	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.6.1	0.983
4th Layer	4.4.1.8	LOW CONFIDENCE prediction!
4th Layer	2.6.1.2	0.979

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	533
PLN02231	534	PLN02231, PLN02231, alanine transaminase	0.0
PTZ00377	481	PTZ00377, PTZ00377, alanine aminotransferase; Prov	0.0
PLN02368	407	PLN02368, PLN02368, alanine transaminase	1e-173
COG0436	393	COG0436, COG0436, Aspartate/tyrosine/aromatic amin	5e-69
cd00609	350	cd00609, AAT_like, Aspartate aminotransferase fami	6e-61
PRK09265	404	PRK09265, PRK09265, aminotransferase AlaT; Validat	2e-59
PRK08363	398	PRK08363, PRK08363, alanine aminotransferase; Vali	4e-47
PRK05764	393	PRK05764, PRK05764, aspartate aminotransferase; Pr	1e-42
PRK13355	517	PRK13355, PRK13355, bifunctional HTH-domain contai	3e-40
PRK07568	397	PRK07568, PRK07568, aspartate aminotransferase; Pr	8e-33
PRK06108	382	PRK06108, PRK06108, aspartate aminotransferase; Pr	2e-31
PRK06855	433	PRK06855, PRK06855, aminotransferase; Validated	7e-31
pfam00155	357	pfam00155, Aminotran_1_2, Aminotransferase class I	2e-29
TIGR01265	403	TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine	2e-27
PRK07682	378	PRK07682, PRK07682, hypothetical protein; Validate	7e-22
PRK06836	394	PRK06836, PRK06836, aspartate aminotransferase; Pr	1e-21
PLN00145	430	PLN00145, PLN00145, tyrosine/nicotianamine aminotr	9e-21
COG1167	459	COG1167, ARO8, Transcriptional regulators containi	4e-20
PRK07683	387	PRK07683, PRK07683, aminotransferase A; Validated	2e-19
TIGR01264	401	TIGR01264, tyr_amTase_E, tyrosine aminotransferase	8e-19
PRK05957	389	PRK05957, PRK05957, aspartate aminotransferase; Pr	4e-18
TIGR03540	383	TIGR03540, DapC_direct, LL-diaminopimelate aminotr	7e-17
PRK06107	402	PRK06107, PRK06107, aspartate aminotransferase; Pr	9e-17
PLN00143	409	PLN00143, PLN00143, tyrosine/nicotianamine aminotr	1e-16
PRK07337	388	PRK07337, PRK07337, aminotransferase; Validated	3e-16
PLN02607	447	PLN02607, PLN02607, 1-aminocyclopropane-1-carboxyl	8e-16
PLN02187	462	PLN02187, PLN02187, rooty/superroot1	8e-15
PLN02656	409	PLN02656, PLN02656, tyrosine transaminase	1e-14
COG1168	388	COG1168, MalY, Bifunctional PLP-dependent enzyme w	2e-14
TIGR03539	357	TIGR03539, DapC_actino, succinyldiaminopimelate tr	2e-14
PRK07550	386	PRK07550, PRK07550, hypothetical protein; Provisio	2e-14
PRK07777	387	PRK07777, PRK07777, aminotransferase; Validated	3e-14
PRK09148	405	PRK09148, PRK09148, aminotransferase; Validated	5e-14
PRK08361	391	PRK08361, PRK08361, aspartate aminotransferase; Pr	5e-14
PRK07681	399	PRK07681, PRK07681, aspartate aminotransferase; Pr	8e-14
PRK09276	385	PRK09276, PRK09276, LL-diaminopimelate aminotransf	1e-13
PTZ00433	412	PTZ00433, PTZ00433, tyrosine aminotransferase; Pro	1e-13
PRK09082	386	PRK09082, PRK09082, methionine aminotransferase; V	2e-13
TIGR03947	359	TIGR03947, viomycin_VioD, capreomycidine synthase	2e-13
PRK06348	384	PRK06348, PRK06348, aspartate aminotransferase; Pr	8e-13
PRK08960	387	PRK08960, PRK08960, hypothetical protein; Provisio	1e-12
PRK06207	405	PRK06207, PRK06207, aspartate aminotransferase; Pr	4e-12
TIGR03537	350	TIGR03537, DapC, succinyldiaminopimelate transamin	5e-12
PRK07865	364	PRK07865, PRK07865, N-succinyldiaminopimelate amin	9e-12
PLN02376	496	PLN02376, PLN02376, 1-aminocyclopropane-1-carboxyl	3e-11
COG0079	356	COG0079, HisC, Histidinol-phosphate/aromatic amino	5e-11
TIGR03538	393	TIGR03538, DapC_gpp, succinyldiaminopimelate trans	5e-11
PRK07309	391	PRK07309, PRK07309, aromatic amino acid aminotrans	1e-10
PLN02450	468	PLN02450, PLN02450, 1-aminocyclopropane-1-carboxyl	1e-10
PRK09147	396	PRK09147, PRK09147, succinyldiaminopimelate transa	1e-09
TIGR01140	330	TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phospha	1e-09
TIGR04350	384	TIGR04350, C_S_lyase_PatB, putative C-S lyase	2e-09
PRK08175	395	PRK08175, PRK08175, aminotransferase; Validated	1e-08
TIGR01141	346	TIGR01141, hisC, histidinol-phosphate aminotransfe	2e-08
TIGR03542	402	TIGR03542, DAPAT_plant, LL-diaminopimelate aminotr	4e-08
PRK14807	351	PRK14807, PRK14807, histidinol-phosphate aminotran	1e-07
PRK08636	403	PRK08636, PRK08636, aspartate aminotransferase; Pr	1e-07
PLN00175	413	PLN00175, PLN00175, aminotransferase family protei	2e-07
PRK05942	394	PRK05942, PRK05942, aspartate aminotransferase; Pr	2e-07
PRK07324	373	PRK07324, PRK07324, transaminase; Validated	2e-07
PRK07366	388	PRK07366, PRK07366, succinyldiaminopimelate transa	2e-07
PRK12414	384	PRK12414, PRK12414, putative aminotransferase; Pro	3e-07
PRK06290	410	PRK06290, PRK06290, aspartate aminotransferase; Pr	3e-07
PRK06225	380	PRK06225, PRK06225, aspartate aminotransferase; Pr	4e-07
PRK08912	387	PRK08912, PRK08912, hypothetical protein; Provisio	2e-06
PRK09440	416	PRK09440, avtA, valine--pyruvate transaminase; Pro	3e-06
PRK14809	357	PRK14809, PRK14809, histidinol-phosphate aminotran	8e-06
PRK06358	354	PRK06358, PRK06358, threonine-phosphate decarboxyl	5e-05
COG3977	417	COG3977, COG3977, Alanine-alpha-ketoisovalerate (o	2e-04
PRK09275	527	PRK09275, PRK09275, aspartate aminotransferase; Pr	4e-04
cd01494	170	cd01494, AAT_I, Aspartate aminotransferase (AAT) s	8e-04
TIGR03801	521	TIGR03801, asp_4_decarbox, aspartate 4-decarboxyla	8e-04
PLN03026	380	PLN03026, PLN03026, histidinol-phosphate aminotran	0.001
PRK08637	388	PRK08637, PRK08637, hypothetical protein; Provisio	0.001
PTZ00376	404	PTZ00376, PTZ00376, aspartate aminotransferase; Pr	0.001
PRK01688	351	PRK01688, PRK01688, histidinol-phosphate aminotran	0.002
PRK01533	366	PRK01533, PRK01533, histidinol-phosphate aminotran	0.002

>gnl|CDD|177876 PLN02231, PLN02231, alanine transaminase

 Score = 1027 bits (2658), Expect = 0.0
 Identities = 454/534 (85%), Positives = 494/534 (92%), Gaps = 1/534 (0%)

Query: 1   MRRFVIGRGRNFLNRSHQQNLLSSSSSHCQSRFLSSTSVIDSPS-SSSMAPTSSPAITVD 59
           MRRF+I + +  ++ S +Q+  S S    Q R L+S S   S S  S+   TSS  +T+D
Sbjct: 1   MRRFLINQAKGLVDHSRRQHHKSPSFLSPQPRPLASLSRFSSTSEMSASDSTSSLPVTLD 60

Query: 60  SLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFR 119
           ++NPKVLKCEYAVRGEIV+IAQRLQ+EL+TNPGS+ FDEILYCNIGNPQSLGQQPITFFR
Sbjct: 61  TINPKVLKCEYAVRGEIVTIAQRLQEELKTNPGSYPFDEILYCNIGNPQSLGQQPITFFR 120

Query: 120 EVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAG 179
           EVLALCDHPS+LD+SET GLFSAD+IERAWQILDQIPGRATGAYSHSQGIKGLRD IAAG
Sbjct: 121 EVLALCDHPSLLDKSETHGLFSADAIERAWQILDQIPGRATGAYSHSQGIKGLRDAIAAG 180

Query: 180 IEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTL 239
           IEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSE DGILCPIPQYPLYSASIALHGGTL
Sbjct: 181 IEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYSASIALHGGTL 240

Query: 240 VPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC 299
           VPYYLDEATGWGLE SE+KKQLE A++KGITVRALVVINPGNPTGQVLAEENQR IV+FC
Sbjct: 241 VPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFC 300

Query: 300 KKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKR 359
           K+EGLVLLADEVYQENVYVP+KKFHSFKKV+RSMGYGEKDISLVSFQSVSKGYYGECGKR
Sbjct: 301 KQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKR 360

Query: 360 GGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGIL 419
           GGYMEVTGF+++VREQIYKVASVNLCSNISGQILASLVMSPPK GDESYESY AE+DGIL
Sbjct: 361 GGYMEVTGFTSDVREQIYKVASVNLCSNISGQILASLVMSPPKPGDESYESYMAEKDGIL 420

Query: 420 SSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRL 479
           SSLARRAKTLEDA NSLEG+TCNKAEGAMYLFPRI LP+KAIKAAEA KT PDAFYC+RL
Sbjct: 421 SSLARRAKTLEDALNSLEGVTCNKAEGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRL 480

Query: 480 LNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKFRN 533
           LNATGIV+VPGSGFGQVPGTWHFRCTILPQEDKIPAIV+RLT+FHK+FMD+FR+
Sbjct: 481 LNATGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAIVSRLTEFHKSFMDEFRD 534

Length = 534

>gnl|CDD|240391 PTZ00377, PTZ00377, alanine aminotransferase; Provisional

 Score =  729 bits (1883), Expect = 0.0
 Identities = 259/479 (54%), Positives = 341/479 (71%), Gaps = 2/479 (0%)

Query: 54  PAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQ 113
            + TV+ +NP+V+  EYAVRG + + A  +++EL+T  G + FD I+YCNIGNPQ+LGQ+
Sbjct: 3   KSFTVEDINPRVVAAEYAVRGLVPARAAEIKEELKTGKGKYPFDSIVYCNIGNPQALGQK 62

Query: 114 PITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLR 173
           P+TF+R+VL+L ++P +L+      LF AD + RA + L+ I G  TGAY+ S G   +R
Sbjct: 63  PLTFYRQVLSLVEYPFLLEDPSVSSLFPADVVARAKEYLNAIGGG-TGAYTDSAGYPFVR 121

Query: 174 DTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA 233
             +AA IE RDG P DP+DIFLTDGAS  + +++QLLI   +DG++ PIPQYPLYSA+I 
Sbjct: 122 KAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGDPSDGVMIPIPQYPLYSAAIT 181

Query: 234 LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQR 293
           L GG  VPYYLDE  GW L+  E+++  E A   GIT RALVVINPGNPTGQVL  +   
Sbjct: 182 LLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVME 241

Query: 294 AIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY-GEKDISLVSFQSVSKGY 352
            I+ FC ++G+VL+ADEVYQEN+Y  EK F SF+KV   +      D+ LVSF S SKG 
Sbjct: 242 EIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGI 301

Query: 353 YGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYC 412
            GECG+RGGY E+T    EVREQIYK+AS+NLCSN+ GQ++  L+ +PP+ GD SY  Y 
Sbjct: 302 IGECGRRGGYFELTNIPPEVREQIYKLASINLCSNVVGQLMTGLMCNPPREGDASYPLYK 361

Query: 413 AERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPD 472
            ERD I +SL RRA+ L D  N +EG++C   EGAMY FPRI+LPEKAI+ A+     PD
Sbjct: 362 RERDAIFTSLKRRAELLTDELNKIEGVSCQPVEGAMYAFPRIELPEKAIQEAKERGLAPD 421

Query: 473 AFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKF 531
             YC  LL +TGIV+VPGSGFGQ PGT+HFR TILP E++I  +V ++ +FH++FM K+
Sbjct: 422 VLYCLELLESTGIVVVPGSGFGQKPGTYHFRITILPPEEQIEEMVKKIKEFHESFMKKY 480

Length = 481

>gnl|CDD|177996 PLN02368, PLN02368, alanine transaminase

 Score =  494 bits (1274), Expect = e-173
 Identities = 218/414 (52%), Positives = 288/414 (69%), Gaps = 11/414 (2%)

Query: 52  SSPAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLG 111
           S  A+  +SLN  V KC+YAVRGE+   A  LQ+E +         +I++ N+GNP +LG
Sbjct: 2   SLKALDYESLNENVKKCQYAVRGELYLRASELQKEGK---------KIIFTNVGNPHALG 52

Query: 112 QQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKG 171
           Q+P+TF R+V+ALC  P +LD      LF AD+I RA   L    G   GAYS S+G+ G
Sbjct: 53  QKPLTFPRQVVALCQAPFLLDDPNVGLLFPADAIARAKHYLSLTSG-GLGAYSDSRGLPG 111

Query: 172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS 231
           +R  +A  IE RDG+P+DP  IFLTDGAS  V  ++  +IR E DG+L P+PQYPLYSA+
Sbjct: 112 VRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPLYSAT 171

Query: 232 IALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEEN 291
           I+L GGTLVPYYL+E+  WGL+ + +++ +  A++KGITVRA+V+INPGNPTGQ L+E N
Sbjct: 172 ISLLGGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEAN 231

Query: 292 QRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG-EKDISLVSFQSVSK 350
            R I+ FC +E LVLL DEVYQ+N+Y  E+ F S KKV   MG    K++ LVSF +VSK
Sbjct: 232 LREILKFCYQERLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSK 291

Query: 351 GYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYES 410
           GY+GECG+RGGY E+T    +  E+IYKVAS+ L  N+SGQI   L+++PPK GD SY+ 
Sbjct: 292 GYWGECGQRGGYFEMTNIPPKTVEEIYKVASIALSPNVSGQIFMGLMVNPPKPGDISYDQ 351

Query: 411 YCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAA 464
           +  E  GIL SL RRA+ + D FNS + + CN  EGAMY FP+I+LP KAI+AA
Sbjct: 352 FVRESKGILESLRRRARMMTDGFNSCKNVVCNFTEGAMYSFPQIKLPPKAIEAA 405

Length = 407

>gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

 Score =  226 bits (579), Expect = 5e-69
 Identities = 103/370 (27%), Positives = 177/370 (47%), Gaps = 41/370 (11%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILCP 221
           Y+ S GI  LR+ IA   + R G   DP  +I +T GA  A+ +    L+ +  D +L P
Sbjct: 61  YTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLALL-NPGDEVLIP 119

Query: 222 IPQYPLYSASIALHGGTLVPYYLD-EATGWGLETSEVKKQLEAAKAKGITVRALVVINPG 280
            P YP Y A++ L GG  VP  LD E  G+  +  +++    A   K    +A+++ +P 
Sbjct: 120 DPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLE---AAITPK---TKAIILNSPN 173

Query: 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDI 340
           NPTG V ++E  +AIV+  ++  +++++DE+Y+E VY    +  S  +++     G +D 
Sbjct: 174 NPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVY-DGAEHPSILELA-----GARDR 227

Query: 341 SLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMS 399
             ++  S SK  YG  G R G++       E+   + K+ S +  C+    Q  A   ++
Sbjct: 228 -TITINSFSK-TYGMTGWRIGWVVGPP--EELIAALRKLKSYLTSCAPTPAQYAAIAALN 283

Query: 400 PPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNK-AEGAMYLFPRIQLPE 458
            P+             + +      R   L +A N + G++  K  EGA YLFP+I    
Sbjct: 284 GPQ--------SDEVVEEMREEYRERRDLLVEALNEIGGLSVVKPPEGAFYLFPKI---- 331

Query: 459 KAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVT 518
                    + +    + ++LL   G+ +VPGSGFG+ PG  + R ++   E+ +   + 
Sbjct: 332 --------PELLDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLATSEETLEEALR 383

Query: 519 RLTDFHKNFM 528
           RL  F   + 
Sbjct: 384 RLARFLAEYR 393

Length = 393

>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family

 Score =  204 bits (520), Expect = 6e-61
 Identities = 99/376 (26%), Positives = 159/376 (42%), Gaps = 43/376 (11%)

Query: 146 ERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHM 205
           E    +           Y    G+  LR+ IA  +  R G    P +I +T+GA  A+ +
Sbjct: 15  EVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSL 74

Query: 206 MMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAK 265
           +++ L+    D +L P P YP Y A+  L G  +VP  LDE  G+ L+     + LEAAK
Sbjct: 75  LLRALLN-PGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLLD----LELLEAAK 129

Query: 266 AKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHS 325
                 + L + NP NPTG VL+EE    + +  KK G+++++DE Y E VY  E     
Sbjct: 130 TPK--TKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEP---- 183

Query: 326 FKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVN-L 384
                 ++   +    ++  +S SK  +G  G R GY+       E+ E++ K+      
Sbjct: 184 ----PPALALLDAYERVIVLRSFSKT-FGLPGLRIGYLIAP--PEELLERLKKLLPYTTS 236

Query: 385 CSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKA 444
             +   Q  A+  +   +             + +     RR   L +A   L  +   K 
Sbjct: 237 GPSTLSQAAAAAALDDGE----------EHLEELRERYRRRRDALLEALKELGPLVVVKP 286

Query: 445 EGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRC 504
            G  +L+    LPE             D  +  RLL   G+V+ PGS FG+  G    R 
Sbjct: 287 SGGFFLWLD--LPEG-----------DDEEFLERLLLEAGVVVRPGSAFGE-GGEGFVRL 332

Query: 505 TILPQEDKIPAIVTRL 520
           +    E+++   + RL
Sbjct: 333 SFATPEEELEEALERL 348

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350

>gnl|CDD|181738 PRK09265, PRK09265, aminotransferase AlaT; Validated

 Score =  201 bits (514), Expect = 2e-59
 Identities = 137/465 (29%), Positives = 216/465 (46%), Gaps = 92/465 (19%)

Query: 70  YAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPS 129
           Y +RG ++  A+RL++E           +IL  NIGNP   G                  
Sbjct: 15  YDIRGPVLKEAKRLEEEGH---------KILKLNIGNPAPFG------------------ 47

Query: 130 ILDRSETQGLFSA-DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFP- 187
                     F A D I R   ++  +P  A G YS S+G+   R  I    + + G P 
Sbjct: 48  ----------FEAPDEILRD--VIRNLP-TAQG-YSDSKGLFSARKAIMQYYQQK-GIPD 92

Query: 188 ADPNDIFLTDGASPAVHMMMQLLIRSENDG--ILCPIPQYPLYSASIALHGGTLVPYYLD 245
            D +DI++ +G S  + M MQ L+   N+G  +L P P YPL++A+++L GG  V Y  D
Sbjct: 93  VDVDDIYIGNGVSELIVMAMQALL---NNGDEVLVPAPDYPLWTAAVSLSGGKPVHYLCD 149

Query: 246 EATGWGLETSEVKKQLEAAKAKGIT--VRALVVINPGNPTGQVLAEENQRAIVDFCKKEG 303
           E  GW          L+  ++K IT   +A+V+INP NPTG V ++E    IV+  ++  
Sbjct: 150 EEAGW-------FPDLDDIRSK-ITPRTKAIVIINPNNPTGAVYSKELLEEIVEIARQHN 201

Query: 304 LVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYM 363
           L++ ADE+Y + +Y       S   ++        D+  V+F  +SK Y    G R G+M
Sbjct: 202 LIIFADEIYDKILY-DGAVHISIASLA-------PDLLCVTFNGLSKAYRV-AGFRVGWM 252

Query: 364 EVTGFSAEVR---EQIYKVASVNLCSNISGQ--ILASLVMSPPKVGDESYESYCAERDGI 418
            ++G     +   E +  +AS+ LC+N+  Q  I  +L       G +S         G 
Sbjct: 253 VLSGPKKHAKGYIEGLDMLASMRLCANVPAQHAIQTAL------GGYQSINELILP-GGR 305

Query: 419 LSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRR 478
           L    +R +  E   N++ G++C K +GA+Y FP++  P+      + E+ V D      
Sbjct: 306 L--YEQRDRAWE-LLNAIPGVSCVKPKGALYAFPKLD-PKVY-PIHDDEQFVLD------ 354

Query: 479 LLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDF 523
           LL    ++LV G+GF   P   HFR   LP+ D +   + R+  F
Sbjct: 355 LLLQEKVLLVQGTGF-NWPEPDHFRIVTLPRVDDLEEAIGRIGRF 398

Length = 404

>gnl|CDD|181402 PRK08363, PRK08363, alanine aminotransferase; Validated

 Score =  168 bits (427), Expect = 4e-47
 Identities = 123/466 (26%), Positives = 200/466 (42%), Gaps = 83/466 (17%)

Query: 64  KVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLA 123
           + +  EYA+R ++V  A+ L+++           +++  NIG+P     QP    +E  A
Sbjct: 7   RAMGVEYAIR-DVVLPARELEKKGI---------KVIRLNIGDPVKFDFQPPEHMKE--A 54

Query: 124 LCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEAR 183
            C                     RA +            Y  S+G+  LR+ I    + +
Sbjct: 55  YC---------------------RAIK-------EGHNYYGPSEGLPELREAIVKREKRK 86

Query: 184 DGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYY 243
           +G    P+D+ +T   + A+ ++   L+    D IL P P YP Y+  +  +GG  V Y 
Sbjct: 87  NGVDITPDDVRVTAAVTEALQLIFGALL-DPGDEILIPGPSYPPYTGLVKFYGGVPVEYR 145

Query: 244 LDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEG 303
             E  GW  +  +++K++          +A+ VINP NPTG +  ++  + I+D   +  
Sbjct: 146 TIEEEGWQPDIDDIRKKITE------KTKAIAVINPNNPTGALYEKKTLKEILDIAGEHD 199

Query: 304 LVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYM 363
           L +++DE+Y    Y  E K  S   ++       KD+ ++    +SK Y+   G R GY+
Sbjct: 200 LPVISDEIYDLMTY--EGKHVSPGSLT-------KDVPVIVMNGLSKVYFAT-GWRLGYI 249

Query: 364 EVTGFS---AEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAE-RDGIL 419
                    AEVRE I K+A + LC N   Q  A   ++ P    E Y     E RD I 
Sbjct: 250 YFVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTGPMDYLEEYMKKLKERRDYIY 309

Query: 420 SSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRL 479
             L           N + GI+  K +GA Y+FPRI          E      D  +   +
Sbjct: 310 KRL-----------NEIPGISTTKPQGAFYIFPRI----------EEGPWKDDKEFVLDV 348

Query: 480 LNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHK 525
           L+   ++ V GSGFG+  G  HFR   LP  + +   + R  +F +
Sbjct: 349 LHEAHVLFVHGSGFGEY-GAGHFRLVFLPPVEILEEAMDRFEEFMR 393

Length = 398

>gnl|CDD|235596 PRK05764, PRK05764, aspartate aminotransferase; Provisional

 Score =  156 bits (396), Expect = 1e-42
 Identities = 101/348 (29%), Positives = 159/348 (45%), Gaps = 50/348 (14%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y+ + GI  LR+ IAA ++  +G   DP+ + +T GA  A++     L+    D ++ P 
Sbjct: 64  YTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMALLD-PGDEVIIPA 122

Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT--VRALVVINPG 280
           P +  Y   + L GG  V     E  G+ L T E   QLEAA    IT   +AL++ +P 
Sbjct: 123 PYWVSYPEMVKLAGGVPVFVPTGEENGFKL-TVE---QLEAA----ITPKTKALILNSPS 174

Query: 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDI 340
           NPTG V + E   AI D   +  + +L+DE+Y++ VY    +F S   +S  +    +D 
Sbjct: 175 NPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVY-DGAEFTSIASLSPEL----RDR 229

Query: 341 SLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISG--QI--LASL 396
           ++      SK  Y   G R GY        E+ + + K+ S +  SN +   Q   +A+L
Sbjct: 230 TIT-VNGFSK-AYAMTGWRLGYAAG---PKELIKAMSKLQS-HSTSNPTSIAQYAAVAAL 283

Query: 397 VMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRI-Q 455
                  G +       E   +  +   R   + D  N + G+ C K EGA Y+FP + +
Sbjct: 284 ------NGPQD----EVEE--MRQAFEERRDLMVDGLNEIPGLECPKPEGAFYVFPNVSK 331

Query: 456 LPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFR 503
           L  K+I  +          +   LL   G+ +VPG  FG  PG  + R
Sbjct: 332 LLGKSITDSLE--------FAEALLEEAGVAVVPGIAFGA-PG--YVR 368

Length = 393

>gnl|CDD|237361 PRK13355, PRK13355, bifunctional HTH-domain containing protein/aminotransferase; Provisional

 Score =  152 bits (386), Expect = 3e-40
 Identities = 131/501 (26%), Positives = 220/501 (43%), Gaps = 92/501 (18%)

Query: 34  LSSTSVIDSPSSSSMAPTSSPAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGS 93
           L+  S   +P S + +  S         + K+    Y VRG +V  A R++       G+
Sbjct: 92  LADPSAPTTPISQTSSEISIGNRRTFKKSHKLDNVLYDVRGPVVDEANRMEAA-----GT 146

Query: 94  HSFDEILYCNIGNPQSLGQQPITFFR---EVLALCDH--PSILDRSETQGLFSADSIERA 148
           H    IL  NIGNP   G      FR   EV+             S+++GLFSA      
Sbjct: 147 H----ILKLNIGNPAPFG------FRTPDEVVYDMAQQLTDTEGYSDSKGLFSAR----- 191

Query: 149 WQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQ 208
                    +A   Y+  +G+  +                D +DI+  +G S  +++ M 
Sbjct: 192 ---------KAIMQYAQLKGLPNV----------------DVDDIYTGNGVSELINLSMS 226

Query: 209 LLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKG 268
            L+    D +L P P YPL++A + L GGT V Y  DE + W  +  +++ +        
Sbjct: 227 ALLDD-GDEVLIPSPDYPLWTACVNLAGGTAVHYRCDEQSEWYPDIDDIRSK-------- 277

Query: 269 ITVR--ALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSF 326
           IT R  A+V+INP NPTG +   E  + IVD  ++  L++ +DE+Y   V   +   H+ 
Sbjct: 278 ITSRTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVM--DGLEHT- 334

Query: 327 KKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV---ASVN 383
                S+     D+  V+F  +SK +    G R G+M ++G     ++ I  +   A++ 
Sbjct: 335 -----SIASLAPDLFCVTFSGLSKSHM-IAGYRIGWMILSGNKRIAKDYIEGLNMLANMR 388

Query: 384 LCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNK 443
           LCSN+  Q +    +     G +S + Y          +  + + + +A N++ GI+  K
Sbjct: 389 LCSNVPAQSIVQTALG----GHQSVKDYLVPG----GRVYEQRELVYNALNAIPGISAVK 440

Query: 444 AEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFG-QVPGTWHF 502
            + A Y+FP+I + +  I          D  +   LL+   +++V G+GF    P   HF
Sbjct: 441 PKAAFYIFPKIDVKKFNIHD--------DEQFALDLLHDKKVLIVQGTGFNWDKPD--HF 490

Query: 503 RCTILPQEDKIPAIVTRLTDF 523
           R   LP+ + +   + RL DF
Sbjct: 491 RVVYLPRLEDLEDAMDRLADF 511

Length = 517

>gnl|CDD|181036 PRK07568, PRK07568, aspartate aminotransferase; Provisional

 Score =  129 bits (326), Expect = 8e-33
 Identities = 102/347 (29%), Positives = 153/347 (44%), Gaps = 53/347 (15%)

Query: 162 AYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCP 221
           AYSHSQGI  LR+  A     + G   +P++I +T+G S A+   M + I    D IL P
Sbjct: 61  AYSHSQGIPELREAFA-KYYKKWGIDVEPDEILITNGGSEAILFAM-MAICDPGDEILVP 118

Query: 222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGN 281
            P Y  Y+      G  +VP       G+ L + E  ++L   K K I     ++ NPGN
Sbjct: 119 EPFYANYNGFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLITPKTKAI-----LISNPGN 173

Query: 282 PTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDIS 341
           PTG V  +E    + +  KK  L L++DEVY+E VY    K+ S       +    + + 
Sbjct: 174 PTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVY-DGLKYTSA------LSL--EGLE 224

Query: 342 --LVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILAS-LVM 398
             ++   SVSK  Y  CG R G + ++  + E+     K+    L      QI A+ L+ 
Sbjct: 225 DRVIIIDSVSK-RYSACGARIGCL-ISK-NKELIAAAMKLCQARLSPPTLEQIGAAALLD 281

Query: 399 SPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPE 458
           +P    DE  E Y            +R   L +  N + G+ C K +GA Y+    +LP 
Sbjct: 282 TPESYFDEVREEY-----------KKRRDILYEELNKIPGVVCEKPKGAFYII--AKLP- 327

Query: 459 KAIKAAEAEKTVPDAFYCRRLL------NATGIVLVPGSGFGQVPGT 499
             +  AE         + + LL        T +++ P SGF   PG 
Sbjct: 328 --VDDAED--------FAKWLLTDFNYNGET-VMVAPASGFYATPGL 363

Length = 397

>gnl|CDD|180404 PRK06108, PRK06108, aspartate aminotransferase; Provisional

 Score =  125 bits (315), Expect = 2e-31
 Identities = 104/387 (26%), Positives = 158/387 (40%), Gaps = 90/387 (23%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y+H+ GI  LR+ +A  +    G    P  I +T     A+ +  Q L+    D ++   
Sbjct: 57  YTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQALV-GPGDEVVAVT 115

Query: 223 PQYPLYSASIALHGGTLVPYYLD-EATGWGLETSEVKKQLEAAKAKGIT--VRALVVINP 279
           P +P   A+  + G  +V   LD    GW L+      +L AA    IT   RAL + +P
Sbjct: 116 PLWPNLVAAPKILGARVVCVPLDFGGGGWTLDLD----RLLAA----ITPRTRALFINSP 167

Query: 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKD 339
            NPTG   + ++ RAI+  C++ GL ++ADEVY+   Y P  +  SF  ++      E D
Sbjct: 168 NNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIA------EPD 221

Query: 340 ISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMS 399
             ++   S SK  +   G R G++               VA   L     GQ+L  L+  
Sbjct: 222 DRIIFVNSFSKN-WAMTGWRLGWL---------------VAPPAL-----GQVLEKLI-- 258

Query: 400 PPKVGDESYESYCA-------------ERDGILSSLARRAK----TLEDAFNSLEGITCN 442
                   Y + C              E +  ++ L  R +     L DA  +L G+   
Sbjct: 259 -------EYNTSCVAQFVQRAAVAALDEGEDFVAELVARLRRSRDHLVDALRALPGVEVA 311

Query: 443 KAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAF-YCRRLLNATGIVLVPGSGFGQVPG--- 498
           K +GAMY F RI               V D+    +RL++  G+ L PG+ FG  PG   
Sbjct: 312 KPDGAMYAFFRIP-------------GVTDSLALAKRLVDEAGLGLAPGTAFG--PGGEG 356

Query: 499 --TWHFRCTILPQEDKIPAIVTRLTDF 523
              W F         ++   V RL  F
Sbjct: 357 FLRWCFAR----DPARLDEAVERLRRF 379

Length = 382

>gnl|CDD|180734 PRK06855, PRK06855, aminotransferase; Validated

 Score =  124 bits (313), Expect = 7e-31
 Identities = 115/481 (23%), Positives = 206/481 (42%), Gaps = 98/481 (20%)

Query: 70  YAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPS 129
           Y +R  IV++A++L++            +I + NIG+P + G++   + +E++A      
Sbjct: 15  YEIR-NIVAVAKKLEKLGV---------KITWENIGDPIAKGEKIPDWMKEIVA------ 58

Query: 130 ILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPAD 189
                                  + +    +  Y  ++G+   R+ +A     R G    
Sbjct: 59  -----------------------ELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQIT 95

Query: 190 PNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTL-VPYYLDEAT 248
           P+DI   +G   A+  +  LL R     ++ P P Y  +S++ A H G   V Y LD   
Sbjct: 96  PDDIIFFNGLGDAIAKIYGLLRREAR--VIGPSPAYSTHSSAEAAHAGYPPVTYRLDPEN 153

Query: 249 GWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLA 308
            W  +  +++ +++   +    +  +++INP NPTG V  +E  R IVD  ++  L ++ 
Sbjct: 154 NWYPDLDDLENKVKYNPS----IAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIIC 209

Query: 309 DEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGF 368
           DE+Y   VY  +K       +S  +G    D+  ++ + +SK      G R G++EV  +
Sbjct: 210 DEIYNNIVYNGKKTVP----LSEVIG----DVPGIALKGISKELPWP-GSRCGWIEV--Y 258

Query: 369 SAEVREQ-------IYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSS 421
           +A+  E        I     + +CS    Q+    +MS P+     Y++Y  ER      
Sbjct: 259 NADKDEVFKKYINSILNAKMIEVCSTTLPQMAIPRIMSHPE-----YKNYLKER---NKR 310

Query: 422 LARRAKTLEDAFNSLEGITCNKAEGAMY---------LFPRIQLPEKAIKAAEAEKTV-- 470
             +R+    +    + G+  N+  GA Y         L  +  LP   I+  E ++ V  
Sbjct: 311 YEKRSNIAYEKLKDVPGLKVNRTNGAFYMTVVFEDGVLNNKQSLP---IENPEVKEYVEG 367

Query: 471 -------PDAFYCRRLLNATGIVLVPGSGF-GQVPGTWHFRCTILPQ-EDKIPAIVTRLT 521
                  PD  +   LL +TGI +VP S F  ++ G   FR T+L + E+K   I   L 
Sbjct: 368 LVKGPVSPDKRFVYYLLASTGICVVPLSSFCTELNG---FRVTLLERDEEKFEWIYQTLA 424

Query: 522 D 522
           +
Sbjct: 425 E 425

Length = 433

>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II

 Score =  118 bits (298), Expect = 2e-29
 Identities = 89/373 (23%), Positives = 142/373 (38%), Gaps = 47/373 (12%)

Query: 139 LFSADSIERAWQ-ILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPND-IFLT 196
           L  + ++    +   D + G     Y  + G+  LR+ +A  +        D    +   
Sbjct: 12  LGDSGTLPAVAKAEKDALAGGTRNLYGPTDGLPELREALAKFLGRSPVLKLDREAAVVFG 71

Query: 197 DGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE 256
            GA   +  ++ LL  +  D IL P P YP Y     L GG +V Y L  +  + L+   
Sbjct: 72  SGAGANIEALIFLLRLNPGDAILVPAPTYPSYIRIFRLAGGEVVRYPLYSSNDFHLD--- 128

Query: 257 VKKQLEAAKAKGITVRALVVI-NPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN 315
               LEAA  +      +V+  +P NPTG V   E    ++D  K+  ++LL DE Y   
Sbjct: 129 -FDALEAALKEATEGNKVVLHTSPHNPTGTVATLEELEKLLDLAKEHNILLLVDEAYAGF 187

Query: 316 VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSK--GYYGECGKRGGYMEVTGFSAEVR 373
           V+       +   +        +  +L+   S SK  G  G    R GY  + G +A V 
Sbjct: 188 VFGSLDAVATRALL-------AEGPNLLVVGSFSKAFGLAGW---RVGY--ILG-NAAVI 234

Query: 374 EQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAF 433
            Q+ K+A     S       A+ +  P  V  E  E    +R      +  R   L D  
Sbjct: 235 SQLRKLARPFYSSTHLQAAAAAALSDPLLVASELEEM--RQR------IKERRDYLRDGL 286

Query: 434 NSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGF 493
            +  G++   ++   +L     L  +A  A             + LL   G+ + PGS F
Sbjct: 287 EAA-GLSVLPSQAGFFLLTG--LDPEAALAL-----------AQVLLEEVGVYVTPGSSF 332

Query: 494 GQVPGTWHFRCTI 506
           G   G    R T+
Sbjct: 333 G---GPGWLRITV 342

Length = 357

>gnl|CDD|188123 TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine family aminotransferase

 Score =  113 bits (286), Expect = 2e-27
 Identities = 91/368 (24%), Positives = 158/368 (42%), Gaps = 45/368 (12%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y+ S G    R+ +A  + +        +D+ LT G S A+ + ++ L       IL P 
Sbjct: 69  YAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQAIEICIEALANP-GANILVPR 127

Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
           P +PLY    A  G  +  Y L     W ++       LE+   +     A+VVINP NP
Sbjct: 128 PGFPLYDTRAAFSGLEVRLYDLLPEKDWEIDL----DGLESLADEKTV--AIVVINPSNP 181

Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL 342
            G V + ++ + I +  +K G+ ++ADE+Y   V+  +  F         M      + +
Sbjct: 182 CGSVFSRDHLQKIAEVAEKLGIPIIADEIYGHMVF-GDAPFI-------PMASFASIVPV 233

Query: 343 VSFQSVSKGYYGECGKRGGYMEV---TG-FSAEVREQIYKVASVNL--CSNISGQILASL 396
           +S   +SK +    G R G++ +    G F   V + +  +    L   + + G +    
Sbjct: 234 LSLGGISKRWVVP-GWRLGWIIIHDPHGIFRDTVLQGLKNLLQRILGPATIVQGAL---- 288

Query: 397 VMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQL 456
               P + + + + +    DG +S L   A+   +    + G+ C K EGAMYL  +++L
Sbjct: 289 ----PDILENTPQEFF---DGKISVLKSNAELCYEELKDIPGLVCPKPEGAMYLMVKLEL 341

Query: 457 PE-KAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPA 515
                IK         D  +C +L     ++ +PGS FG +P  W  R TI   E  +  
Sbjct: 342 ELFPEIKD--------DVDFCEKLAREESVICLPGSAFG-LPN-W-VRITITVPESMLEE 390

Query: 516 IVTRLTDF 523
             +R+ +F
Sbjct: 391 ACSRIKEF 398

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. Length = 403

>gnl|CDD|181082 PRK07682, PRK07682, hypothetical protein; Validated

 Score = 97.1 bits (242), Expect = 7e-22
 Identities = 94/348 (27%), Positives = 157/348 (45%), Gaps = 48/348 (13%)

Query: 162 AYSHSQGIKGLRDTIAAGIEARDGFPADPND-IFLTDGASPAVHMMMQLLIRSENDGILC 220
           +Y+ + G+  LR  IA  ++ R     DPND I +T GAS A+ + M+ +I +  D +L 
Sbjct: 52  SYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMRAII-NPGDEVLI 110

Query: 221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVR--ALVVIN 278
             P +  Y+  + L GG  VP        + ++ +    Q+EAA    IT +  A+++ +
Sbjct: 111 VEPSFVSYAPLVTLAGGVPVPVATTLENEFKVQPA----QIEAA----ITAKTKAILLCS 162

Query: 279 PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEK 338
           P NPTG VL +     I    +K  L++L+DE+Y E  Y  ++ + SF  +    G  E+
Sbjct: 163 PNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTY--DEAYTSFASIK---GMRER 217

Query: 339 DISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNL-CSNISGQILASLV 397
            I +  F   SKG +   G R G+           E + K+   ++ C+    Q  A   
Sbjct: 218 TILISGF---SKG-FAMTGWRLGF---IAAPVYFSEAMLKIHQYSMMCAPTMAQFAA--- 267

Query: 398 MSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLP 457
           +   + G++           +  S  +R      +FN + G+TC+   GA Y FP I   
Sbjct: 268 LEALRAGNDDVIR-------MRDSYRKRRNFFVTSFNEI-GLTCHVPGGAFYAFPSIS-- 317

Query: 458 EKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCT 505
              + + E         +  +LL    + +VPGS FG+  G    RC+
Sbjct: 318 STGLSSEE---------FAEQLLLEEKVAVVPGSVFGE-SGEGFIRCS 355

Length = 378

>gnl|CDD|180720 PRK06836, PRK06836, aspartate aminotransferase; Provisional

 Score = 96.4 bits (241), Expect = 1e-21
 Identities = 98/360 (27%), Positives = 157/360 (43%), Gaps = 79/360 (21%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y  + G   +R+ IA  +  R G P   + I +T GA+ A+++ ++ ++ +  D ++   
Sbjct: 69  YMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGALNVALKAIL-NPGDEVIVFA 127

Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVK-KQLEAAKAKGIT--VRALVVINP 279
           P +  Y   +  HGG LV    D       +T +     LEAA    IT   +A+++ +P
Sbjct: 128 PYFVEYRFYVDNHGGKLVVVPTDT------DTFQPDLDALEAA----ITPKTKAVIINSP 177

Query: 280 GNPTGQVLAEENQRAIVDFCKKEG------LVLLADEVYQENVY----VPEKKFHSFKKV 329
            NPTG V +EE  +A+    +++       + L++DE Y+E VY    VP      FK  
Sbjct: 178 NNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPY----IFKYY 233

Query: 330 SRS-MGYG-EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSN 387
             S + Y   K +SL              G+R GY+ V   + E+ +    VA++   + 
Sbjct: 234 DNSIVVYSFSKSLSLP-------------GERIGYIAV---NPEMEDADDLVAALVFANR 277

Query: 388 ISGQILASLVMSP--PKVGDES--YESYCAERDGILSSLARRAKTLEDAFNSLEGITCNK 443
           I G + A  +M     K  D +     Y   RD +          L +      G  C K
Sbjct: 278 ILGFVNAPALMQRVVAKCLDATVDVSIYKRNRDLL-------YDGLTEL-----GFECVK 325

Query: 444 AEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFR 503
            +GA YLFP         K+ E +    D  +C +      ++LVPGSGFG  PG  +FR
Sbjct: 326 PQGAFYLFP---------KSPEED----DVAFCEKAK-KHNLLLVPGSGFG-CPG--YFR 368

Length = 394

>gnl|CDD|215074 PLN00145, PLN00145, tyrosine/nicotianamine aminotransferase; Provisional

 Score = 94.5 bits (235), Expect = 9e-21
 Identities = 90/335 (26%), Positives = 151/335 (45%), Gaps = 32/335 (9%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           YS   G+   R  IA  +     +    +DI+LT G + A+ ++M +L +   + IL P 
Sbjct: 90  YSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEIIMSVLAQPGAN-ILLPR 148

Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
           P YPLY A     G  +  + L    GW ++   V+     A A   TV A+V+INP NP
Sbjct: 149 PGYPLYEARAVFSGLEVRHFDLLPERGWEVDLEGVE-----ALADENTV-AMVIINPNNP 202

Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL 342
            G V + E+   I +  +K G++++ADEVY    +   K F         MG   +   +
Sbjct: 203 CGSVYSYEHLAKIAETARKLGILVIADEVYDHLTF-GSKPF-------VPMGVFGEVAPV 254

Query: 343 VSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV-ASVNLCSNISGQILASLVMSPP 401
           ++  S+SK +    G R G++     +  ++E   KV  S+    NIS      +  + P
Sbjct: 255 LTLGSISKRWVVP-GWRLGWIATCDPNGILKET--KVVDSIRNYLNISTDPATFVQGAIP 311

Query: 402 KVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITC-NKAEGAMYLFPRIQLPE-K 459
           ++   + E +  +    L  L   A    +    ++ ITC +K EG+M++  ++ L    
Sbjct: 312 QIIANTKEEFFTK---TLGLLKETADICYEKIKEIKCITCPHKPEGSMFVMVKLDLSCLS 368

Query: 460 AIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFG 494
            IK         D  +C +L     +V++PGS  G
Sbjct: 369 GIK--------DDMDFCCKLAKEESVVVLPGSALG 395

Length = 430

>gnl|CDD|224089 COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

 Score = 92.8 bits (231), Expect = 4e-20
 Identities = 88/373 (23%), Positives = 153/373 (41%), Gaps = 58/373 (15%)

Query: 139 LFSADSIERAW-QILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTD 197
           LF  +++ RA  ++L          Y  + G+  LR+ IAA + AR G   +P  I +T 
Sbjct: 103 LFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITS 162

Query: 198 GASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEV 257
           GA  A+ ++++LL+    D +L   P YP    ++   G  ++P  +DE  G   E   +
Sbjct: 163 GAQQALDLLLRLLLD-PGDTVLVEDPTYPGALQALEALGARVIPVPVDE-DGIDPE--AL 218

Query: 258 KKQLEAAKAKGITVRALVVINP--GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN 315
           ++ L   K K       V + P   NPTG  ++ E ++A++   +K  ++++ D+ Y E 
Sbjct: 219 EEALAQWKPK------AVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGEL 272

Query: 316 VY--VPEKKFHSFKKVSRSMGYGEKDISLVSF-QSVSKGYYGECGKRGGYMEVTGFSAEV 372
            Y   P     +     R        I L SF ++++ G       R GY+       E+
Sbjct: 273 RYDGPPPPPLKALDAPGRV-------IYLGSFSKTLAPGL------RLGYVVA---PPEL 316

Query: 373 REQI--YKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLE 430
            E++   K A+    S++S   LA+       +    Y+ +      +    ARR   L 
Sbjct: 317 IEKLLRLKQAADLGPSSLSQAALAAF------LLSGHYDRH---LRRLRREYARRRDALL 367

Query: 431 DAFNSL--EGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLV 488
           +A      E  T  + EG ++L+  ++LPE             DA          G+V+ 
Sbjct: 368 EALAEYLPELATWTRPEGGLFLW--LELPEGI-----------DARELLAAALEKGVVVT 414

Query: 489 PGSGFGQVPGTWH 501
           P        G   
Sbjct: 415 PLGSAFSADGDPR 427

Length = 459

>gnl|CDD|236075 PRK07683, PRK07683, aminotransferase A; Validated

 Score = 90.2 bits (224), Expect = 2e-19
 Identities = 93/343 (27%), Positives = 149/343 (43%), Gaps = 58/343 (16%)

Query: 162 AYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILC 220
           +Y+H+ G+  LR      ++ +      P  +I +T GAS A+ +  +  I      ++ 
Sbjct: 60  SYTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDIAFRT-ILEPGTEVIL 118

Query: 221 PIPQYPLYSASIALHGGTLVPYYLD-EATGWGLETSEVKKQLEAAKAKGIT--VRALVVI 277
           P P YP Y   I L G    P ++D  +TG+ L      + LE A    IT   R +V+ 
Sbjct: 119 PAPIYPGYEPIIRLCGAK--PVFIDTRSTGFRL----TAEALENA----ITEKTRCVVLP 168

Query: 278 NPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE 337
            P NPTG  L++E  + I D  K + + +L+DE+Y E VY  E+   S   ++      E
Sbjct: 169 YPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVY--EQPHTS---IAHFPEMRE 223

Query: 338 KDISLVSFQSVSKGYYGECGKRGGYMEVTGFS-AEVREQIYKVA--SVNLCSNISGQILA 394
           K I +     +SK  +   G R G++    F+ + + + I KV   +V   S+IS    A
Sbjct: 224 KTIVI---NGLSKS-HSMTGWRIGFL----FAPSYLAKHILKVHQYNVTCASSISQY--A 273

Query: 395 SLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLE--GITCNKAEGAMYLFP 452
           +L            E+  A +D       +  K  +  +N L   G+   K  GA YLFP
Sbjct: 274 AL------------EALTAGKDDAKMMRHQYKKRRDYVYNRLISMGLDVEKPTGAFYLFP 321

Query: 453 RIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ 495
            I              T+    +   L+   G+ +VPGS F +
Sbjct: 322 SI-----------GHFTMSSFDFALDLVEEAGLAVVPGSAFSE 353

Length = 387

>gnl|CDD|188122 TIGR01264, tyr_amTase_E, tyrosine aminotransferase, eukaryotic

 Score = 88.3 bits (219), Expect = 8e-19
 Identities = 86/363 (23%), Positives = 151/363 (41%), Gaps = 37/363 (10%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y+ + G    R+ IA+     DG P + +D+ L  G S A+ M +   + +    IL P 
Sbjct: 69  YAPTVGALSAREAIASYYHNPDG-PIEADDVVLCSGCSHAIEMCI-AALANAGQNILVPR 126

Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
           P +PLY       G  +  Y L     W ++  +++  L   K       ALVV NP NP
Sbjct: 127 PGFPLYRTLAESMGIEVKLYNLLPDKSWEIDLKQLE-SLIDEKTA-----ALVVNNPSNP 180

Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL 342
            G V + ++   I+   +++ L ++ADE+Y + V+     F     +S        ++ +
Sbjct: 181 CGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVF-SGATFEPVASLS-------SNVPI 232

Query: 343 VSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSP-P 401
           +S   ++K +    G R G++ +      +R+   +   V L   I G    ++V    P
Sbjct: 233 LSCGGLAKRWLVP-GWRLGWIIIHDRRGILRD--IRDGLVKLSQRILGP--CTIVQGALP 287

Query: 402 KVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPE-KA 460
            +   + + Y    DG LS L   A     A  ++ G+      GAMY+   I++     
Sbjct: 288 SILLRTPQEYF---DGTLSVLESNAMLCYGALAAVPGLQPVMPSGAMYMMVGIEMEHFPE 344

Query: 461 IKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRL 520
            K         D  +  RL+    +  +PGS F + PG   FR  +      +    +R+
Sbjct: 345 FKN--------DVEFTERLIAEQSVFCLPGSCF-EYPG--FFRVVLTVPVVMMEEACSRI 393

Query: 521 TDF 523
            +F
Sbjct: 394 QEF 396

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs [Energy metabolism, Amino acids and amines]. Length = 401

>gnl|CDD|235654 PRK05957, PRK05957, aspartate aminotransferase; Provisional

 Score = 86.3 bits (214), Expect = 4e-18
 Identities = 92/341 (26%), Positives = 140/341 (41%), Gaps = 57/341 (16%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPND-IFLTDGASPAVHMMMQLLIRSENDGILCP 221
           Y   QGI  L + I   ++  +G   +    I +T G++ A    + L I    D I+  
Sbjct: 61  YQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNAI-LAITDPGDEIILN 119

Query: 222 IPQYPLYSASIALHGG--TLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT--VRALVVI 277
            P Y  +  +I + G    LVP   D+           + Q EA +   IT   RA+V I
Sbjct: 120 TPYYFNHEMAITMAGCQPILVP--TDD---------NYQLQPEAIEQ-AITPKTRAIVTI 167

Query: 278 NPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE 337
           +P NPTG V  E   RA+   C + G+  ++DE Y+   Y   K F          G G 
Sbjct: 168 SPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSP----GSIPGSGN 223

Query: 338 KDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNL-CSNISGQ--ILA 394
             ISL S    SK  YG    R GYM +      + E I K+    L C  +  Q   L 
Sbjct: 224 HTISLYSL---SKA-YGFASWRIGYMVI---PIHLLEAIKKIQDTILICPPVVSQYAALG 276

Query: 395 SLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGI-TCNKAEGAMYLFPR 453
           +L     +VG    +SYC +    L  +A+  + L  +   L+   T + A GA Y F +
Sbjct: 277 AL-----QVG----KSYCQQH---LPEIAQVRQILLKSLGQLQDRCTLHPANGAFYCFLK 324

Query: 454 IQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFG 494
           +               + D    ++L+    + ++PG+ FG
Sbjct: 325 VNTD------------LNDFELVKQLIREYRVAVIPGTTFG 353

Length = 389

>gnl|CDD|234250 TIGR03540, DapC_direct, LL-diaminopimelate aminotransferase

 Score = 82.1 bits (203), Expect = 7e-17
 Identities = 96/374 (25%), Positives = 152/374 (40%), Gaps = 66/374 (17%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLT-DGASPAVHMMMQLLIRSENDG--IL 219
           Y   +G+   R  +A   + R G   DP    L+  G+   +  +    +   N G  +L
Sbjct: 63  YPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLAFV---NPGDIVL 119

Query: 220 CPIPQYPLYSASIALHGGTLVPYY--LDEATGWGLETSEVKKQLEAAKAKGITVRALVVI 277
            P P YP+Y       GG   PY   L E  G+ L   +   +  A KAK +       I
Sbjct: 120 VPDPGYPVYRIGTLFAGGE--PYEMPLKEENGF-LPDFDAIPEDIAKKAKLM------FI 170

Query: 278 N-PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG 336
           N P NPTG V   +  + +V+F K+  +++  D  Y E        F  +K  S     G
Sbjct: 171 NYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEIT------FDGYKAPSFLEVDG 224

Query: 337 EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQI-LAS 395
            KD+  + F S+SK  Y   G R G M V   +A++   + KV + N+ S +   I  A+
Sbjct: 225 AKDVG-IEFHSLSKT-YNMTGWRIG-MAVG--NADLIAGLGKVKT-NVDSGVFQAIQYAA 278

Query: 396 LVM--SPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPR 453
           +     P  V  E  + Y            RR   L +A   + GI   K +   Y++  
Sbjct: 279 IAALNGPQDVVKEIRKIY-----------QRRRDLLLEALKKI-GIDVEKPKATFYVWVP 326

Query: 454 IQLPEKAIKAAEAEKTVPDAF----YCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQ 509
                           VP+ +    +  RLL  TG+V+ PG GFG+  G  + R ++   
Sbjct: 327 ----------------VPEGYTSAEFAARLLEETGVVVTPGVGFGEY-GEGYIRISLTVP 369

Query: 510 EDKIPAIVTRLTDF 523
           ++++   V R+   
Sbjct: 370 DERLEEAVARIKKL 383

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia and the clade containing the Chlamydia gene is a neighboring one in the same pfam00155 superfamily so it seems quite reasonable that these enzymes catalyze the same transformation. Length = 383

>gnl|CDD|180403 PRK06107, PRK06107, aspartate aminotransferase; Provisional

 Score = 82.1 bits (203), Expect = 9e-17
 Identities = 99/370 (26%), Positives = 154/370 (41%), Gaps = 53/370 (14%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y+   G   LR  I A +E R+G     N+I +  GA  A+ + +   +    D ++ P 
Sbjct: 66  YTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALMATL-EAGDEVIIPA 124

Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRAL-VVIN-PG 280
           P +  Y   +  + GT V     E  G+ L T E    LEAA    IT R   +++N P 
Sbjct: 125 PYWVSYPDMVLANDGTPVIVACPEEQGFKL-TPE---ALEAA----ITPRTRWLILNAPS 176

Query: 281 NPTGQVLAEENQRAIVDFCKKEGLVL-LADEVYQENVYVPEKKFHSFKKVSRSMGYGEKD 339
           NPTG V +    RA+ D   +   VL L D++Y    +  E   H             +D
Sbjct: 177 NPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPEL-----RD 231

Query: 340 ISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS--VNLCSNISGQILASLV 397
             LV+   VSK  Y   G R GY       A++   I K+ S   +  S+IS Q  A+  
Sbjct: 232 RVLVT-NGVSKT-YAMTGWRIGY---AAGPADLIAAINKLQSQSSSCPSSIS-QAAAAAA 285

Query: 398 MSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLP 457
           ++    GD+S+       + +     RR   L    N++ G++C   +GA YL+      
Sbjct: 286 LN----GDQSF-----VTESVAVYKQRRDYALA-LLNAIPGLSCLVPDGAFYLYVNC--- 332

Query: 458 EKAIKAAEAEKTVP-------DAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQE 510
                A    KT P       D      LL++ G+ +V G+ +G  P   +FR +I    
Sbjct: 333 -----AGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGLSP---YFRLSIATSL 384

Query: 511 DKIPAIVTRL 520
           + +     R+
Sbjct: 385 ETLEEACARI 394

Length = 402

>gnl|CDD|165711 PLN00143, PLN00143, tyrosine/nicotianamine aminotransferase; Provisional

 Score = 81.6 bits (201), Expect = 1e-16
 Identities = 83/352 (23%), Positives = 148/352 (42%), Gaps = 64/352 (18%)

Query: 162 AYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCP 221
           +Y+ + GI   R  IA  +     +   P+D++LT G   A  +++++L R E + IL P
Sbjct: 69  SYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKVLARPEAN-ILLP 127

Query: 222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGN 281
            P +P        H   +  + L    GW ++   V+     A A   T+ A+V+INPGN
Sbjct: 128 RPGFPDVETYAIFHHLEIRHFDLLPEKGWEVDLDAVE-----AIADENTI-AMVIINPGN 181

Query: 282 PTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY-----VPEKKFHSFKKVSRSMGYG 336
           P G V + E+   I +  +K G++++ADEVY   V+     VP             MG  
Sbjct: 182 PCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVP-------------MGLF 228

Query: 337 EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASL 396
              + +++  S+SK +    G   G++     S  ++              I+  I  +L
Sbjct: 229 ASIVPVITLGSISKRWMIP-GWGLGWLVTCDPSGLLQI-----------CEIADSIKKAL 276

Query: 397 VMSP----------PKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITC----N 442
             +P          P++ +++ E + ++   IL         L   ++ L+ I C     
Sbjct: 277 NPAPFPPTFIQAAIPEILEKTTEDFFSKTINILR------AALAFCYDKLKEIPCIMCPQ 330

Query: 443 KAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFG 494
           KAEGA +   ++ L          E    D  +C +L     ++++PG   G
Sbjct: 331 KAEGAFFALVKLNL-------LLLEDIEDDMEFCLKLAKEESLIILPGVTVG 375

Length = 409

>gnl|CDD|180937 PRK07337, PRK07337, aminotransferase; Validated

 Score = 80.1 bits (198), Expect = 3e-16
 Identities = 92/365 (25%), Positives = 145/365 (39%), Gaps = 51/365 (13%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y+ + G+  LR+ IAA    R G    P  I +T GAS A+ +    L+    D +L P 
Sbjct: 63  YTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLLACLALVER-GDEVLMPD 121

Query: 223 PQYPLYSASIALHGGT--LVPYYLDEATGWGLETSEVKKQLEAAKAK---GITVRALVVI 277
           P YP     +A   G   LVP                + QL AA  +   G   R +++ 
Sbjct: 122 PSYPCNRHFVAAAEGRPVLVP-----------SGPAERFQLTAADVEAAWGERTRGVLLA 170

Query: 278 NPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE 337
           +P NPTG  +A +  R IV+  +  G   + DE+YQ   Y  +    S      ++  G+
Sbjct: 171 SPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSY--DAAPVS------ALSLGD 222

Query: 338 KDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLV 397
             I++ SF   SK Y+   G R G++ V        E++    ++ +C++   Q  A   
Sbjct: 223 DVITINSF---SK-YFNMTGWRLGWLVVPEALVGTFEKL--AQNLFICASALAQHAALAC 276

Query: 398 MSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCN-KAEGAMYLFPRIQL 456
             P     ++   Y   R        RR   +  A  SL G       +GA Y++     
Sbjct: 277 FEP-----DTLAIYERRRA----EFKRRRDFIVPALESL-GFKVPVMPDGAFYVYADC-- 324

Query: 457 PEKAIKAAEAEKTVPDAF-YCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPA 515
                    A     D+    + +L+  G+VLVPG  FG      + R +      ++  
Sbjct: 325 ------RGVAHPAAGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYATSMSRLEE 378

Query: 516 IVTRL 520
            V RL
Sbjct: 379 AVARL 383

Length = 388

>gnl|CDD|215327 PLN02607, PLN02607, 1-aminocyclopropane-1-carboxylate synthase

 Score = 79.5 bits (196), Expect = 8e-16
 Identities = 49/187 (26%), Positives = 92/187 (49%), Gaps = 7/187 (3%)

Query: 158 RATGAYSHSQGIKGLRDTIAAGIEARDGFPA--DPNDIFLTDGASPAVHMMMQLLIRSEN 215
           R    +    G+K  R  +A+ +E   G  A  DP+ I LT GA+ A + ++  ++    
Sbjct: 86  RENALFQDYHGLKSFRQAMASFMEQIRGGKARFDPDRIVLTAGAT-AANELLTFILADPG 144

Query: 216 DGILCPIPQYPLYSASIALHGGT-LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRAL 274
           D +L P P YP +   +    G  +VP + D +  + +    ++   + A+A  I VR +
Sbjct: 145 DALLVPTPYYPGFDRDLRWRTGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGV 204

Query: 275 VVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG 334
           ++ NP NP G  +       I+DF  ++ + L++DE+Y  +V+    +F S  ++  + G
Sbjct: 205 LITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVF-SASEFVSVAEIVEARG 263

Query: 335 YGEKDIS 341
           Y  K ++
Sbjct: 264 Y--KGVA 268

Length = 447

>gnl|CDD|215119 PLN02187, PLN02187, rooty/superroot1

 Score = 76.3 bits (187), Expect = 8e-15
 Identities = 82/359 (22%), Positives = 153/359 (42%), Gaps = 44/359 (12%)

Query: 145 IERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVH 204
           IE    ++D +      +Y    GI   R  +A  +         P DIFLT G +  + 
Sbjct: 86  IEAEDAVVDVLRSGKGNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIE 145

Query: 205 MMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAA 264
           ++ + L R  N  IL P P +P Y A  A  G  +  + L     W ++   ++     A
Sbjct: 146 IVFESLARP-NANILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGIE-----A 199

Query: 265 KAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH 324
            A   TV A+VVINP NP G V + ++ + + +  +K G+++++DEVY   ++  +  F 
Sbjct: 200 IADENTV-AMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIF-GDNPF- 256

Query: 325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRG--------GYMEVTGFSAEVREQI 376
                  SMG     + +++   +SKG+     K G        G  E T     +++ +
Sbjct: 257 ------VSMGKFASIVPVLTLAGISKGWVVPGWKIGWIALNDPEGVFETTKVLQSIKQNL 310

Query: 377 YKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL 436
                 ++  + +  I A+L    P + +++ +++ A+++ IL         + D    +
Sbjct: 311 ------DVTPDPATIIQAAL----PAILEKADKNFFAKKNKILK---HNVDLVCDRLKDI 357

Query: 437 EGITC-NKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFG 494
             + C  K E   YL  +++L       +  +    D  +C +L     +V +PG   G
Sbjct: 358 PCVVCPKKPESCTYLLTKLEL-------SLMDNIKDDIDFCVKLAREENLVFLPGDALG 409

Length = 462

>gnl|CDD|178262 PLN02656, PLN02656, tyrosine transaminase

 Score = 75.7 bits (186), Expect = 1e-14
 Identities = 82/338 (24%), Positives = 150/338 (44%), Gaps = 38/338 (11%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y+ + G+   R  IA  +     +    +D+F+T G + A+ + + +L R   + IL P 
Sbjct: 69  YAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQAIDVALSMLARPGAN-ILLPR 127

Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
           P +P+Y    A     +    L    GW ++   V+     A A   TV ALV+INPGNP
Sbjct: 128 PGFPIYELCAAFRHLEVRYVDLLPEKGWEVDLDAVE-----ALADQNTV-ALVIINPGNP 181

Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQE-----NVYVPEKKFHSFKKVSRSMGYGE 337
            G V + ++ + I +  +K  ++++ADEVY       N +VP   F S            
Sbjct: 182 CGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSI----------- 230

Query: 338 KDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLV 397
             + +++  S+SK +    G R G+   T  S   R+    V  +    +I G     + 
Sbjct: 231 --VPVLTLGSLSKRWIVP-GWRLGWFVTTDPSGSFRDPKI-VERIKKYFDILGGPATFIQ 286

Query: 398 MSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITC-NKAEGAMYLFPRIQL 456
            + P + +++ ES+  +    ++ L + +    D    +  ITC +K EG+M +  ++ L
Sbjct: 287 AAVPTILEQTDESFFKK---TINILKQSSDICCDRIKEIPCITCPHKPEGSMAVMVKLNL 343

Query: 457 PEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFG 494
                  +  E    D  +C +L     ++++PG+  G
Sbjct: 344 -------SLLEDISDDIDFCFKLAREESVIILPGTAVG 374

Length = 409

>gnl|CDD|224090 COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

 Score = 75.0 bits (185), Expect = 2e-14
 Identities = 42/176 (23%), Positives = 80/176 (45%), Gaps = 8/176 (4%)

Query: 150 QILDQIPGRAT-GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQ 208
           +I++ +  R   G + +  G   L   IA   + R  +   P  I    G  P + + ++
Sbjct: 42  EIIEALRERVDHGVFGYPYGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIR 101

Query: 209 LLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYL-DEATGWGLETSEVKKQLEAAKAK 267
            L     DG++   P YP +  +I L+G  ++   L ++   + ++       LE A   
Sbjct: 102 AL-TKPGDGVVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDF----DALEKAFVD 156

Query: 268 GITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKF 323
              V+  ++ NP NPTG+V  +E  R I + C + G+ +++DE++ + V    K  
Sbjct: 157 E-RVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHI 211

Length = 388

>gnl|CDD|132578 TIGR03539, DapC_actino, succinyldiaminopimelate transaminase

 Score = 74.8 bits (184), Expect = 2e-14
 Identities = 95/382 (24%), Positives = 147/382 (38%), Gaps = 97/382 (25%)

Query: 162 AYSHSQGIKGLRDTIAAGIEARDGFPA-DPNDIFLTDGASPAVHMMMQLLIRSENDGILC 220
            Y  + G   LR+ I   +E R G P  DP  +    G    V  +  LL     D ++ 
Sbjct: 51  GYPQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAWLPTLLGLGPGDTVVI 110

Query: 221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVIN-P 279
           P   YP Y     L G T V    D+ T                         L+ +N P
Sbjct: 111 PELAYPTYEVGALLAGATPVAA--DDPTELDPVGP-----------------DLIWLNSP 151

Query: 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKD 339
           GNPTG+VL+ +  RAIV + ++ G V+ +DE Y E                  +G+  + 
Sbjct: 152 GNPTGRVLSVDELRAIVAWARERGAVVASDECYLE------------------LGWEGRP 193

Query: 340 IS-------------LVSFQSVSK-----GYYGECGKRGGYMEVTGFSAEVRE--QIYKV 379
           +S             L++  S+SK     GY      R G+  V G  A V E   + K 
Sbjct: 194 VSILDPRVCGGDHTGLLAVHSLSKRSNLAGY------RAGF--VAGDPALVAELLTVRKH 245

Query: 380 ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGI 439
           A + + + +   ++A+L       GD+ + +    R       A R   L+ A     G 
Sbjct: 246 AGLMVPAPVQAAMVAAL-------GDDGHVAEQKAR------YAARRAQLKPALEK-AGF 291

Query: 440 TCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGT 499
             + +E  +YL+        A +  +A  TV         L   GI++ PG  +G   G+
Sbjct: 292 RIDHSEAGLYLW--------ATRGEDAWDTV-------DRLAELGILVAPGDFYGPA-GS 335

Query: 500 WHFRCTILPQEDKIPAIVTRLT 521
            H R  +   +++I A V RLT
Sbjct: 336 QHVRVALTATDERIAAAVARLT 357

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Length = 357

>gnl|CDD|181026 PRK07550, PRK07550, hypothetical protein; Provisional

 Score = 74.6 bits (184), Expect = 2e-14
 Identities = 86/343 (25%), Positives = 126/343 (36%), Gaps = 53/343 (15%)

Query: 159 ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI 218
           A   Y   +G+  LR+  AA      G    P  + +T G + A    M  L     D +
Sbjct: 59  AAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMVTLAG-AGDEV 117

Query: 219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVIN 278
           + P+P Y  +   + + G   V    DE  G  L         EA        RA+ ++ 
Sbjct: 118 ILPLPWYFNHKMWLDMLGIRPVYLPCDEGPG-LLPDPA---AAEALITPRT--RAIALVT 171

Query: 279 PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSM----G 334
           P NPTG V   E    + D  ++ G+ L+ DE Y++        F S       +     
Sbjct: 172 PNNPTGVVYPPELLHELYDLARRHGIALILDETYRD--------FDSGGGAPHDLFADPD 223

Query: 335 YGEKDISLVSFQSVSKGYYGEC--GKRGGYMEVTGFSAEVREQIYKVA-SVNLCSNISGQ 391
           + +  + L SF   SK Y      G R G   V   S     +I K   +V +C+   GQ
Sbjct: 224 WDDTLVHLYSF---SKSY---ALTGHRVG--AVVA-SPARIAEIEKFMDTVAICAPRIGQ 274

Query: 392 ILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLF 451
           I  +  +  P + D         R  I    ARR       F  L G     A GA + +
Sbjct: 275 IAVAWGL--PNLADWRAG----NRAEI----ARRRDAFRAVFARLPGWEL-LASGAYFAY 323

Query: 452 PRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFG 494
            R   P++           P     RRL    GI+ +PG+ FG
Sbjct: 324 VRHPFPDR-----------PSREVARRLAKEAGILCLPGTMFG 355

Length = 386

>gnl|CDD|236095 PRK07777, PRK07777, aminotransferase; Validated

 Score = 73.9 bits (182), Expect = 3e-14
 Identities = 54/159 (33%), Positives = 77/159 (48%), Gaps = 13/159 (8%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCP 221
           Y    GI  LR  IAA    R G   DP+ ++ +T GA+ A+   +  L+    D +L  
Sbjct: 57  YPPGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAAVLGLVEP-GDEVLLI 115

Query: 222 IPQYPLYSASIALHGGTLVPYYLDE-ATGWGLETSEVKKQLEAAKAKGIT--VRALVVIN 278
            P Y  Y+A IA+ G   VP  L     G+ L+       L AA    +T   RAL+V +
Sbjct: 116 EPYYDSYAAVIAMAGAHRVPVPLVPDGRGFALDLDA----LRAA----VTPRTRALIVNS 167

Query: 279 PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
           P NPTG VL      AI +   +  L+++ DEVY+  V+
Sbjct: 168 PHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVF 206

Length = 387

>gnl|CDD|181674 PRK09148, PRK09148, aminotransferase; Validated

 Score = 73.6 bits (181), Expect = 5e-14
 Identities = 65/197 (32%), Positives = 90/197 (45%), Gaps = 21/197 (10%)

Query: 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGI 218
           T  YS S+GI GLR   AA    R G   +P+  +  T G+      M Q  I +  D I
Sbjct: 61  THRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFANMAQA-ITAPGDVI 119

Query: 219 LCPIPQYPLYSASIALHGGTL--VPYYLDEATGWGLETSEVKKQLEAAKAKGI-TVRALV 275
           LCP P YP+++    + GG +  VP   DE         E    LE A    I    AL+
Sbjct: 120 LCPNPSYPIHAFGFIMAGGVIRSVPAEPDE---------EFFPALERAVRHSIPKPIALI 170

Query: 276 VINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY 335
           V  P NPT  V   +  + +V F KK  +++L+D  Y E +Y       S  +V      
Sbjct: 171 VNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSE-IYFDGNPPPSVLQVP----- 224

Query: 336 GEKDISLVSFQSVSKGY 352
           G KD++ V F S+SK +
Sbjct: 225 GAKDVT-VEFTSMSKTF 240

Length = 405

>gnl|CDD|236248 PRK08361, PRK08361, aspartate aminotransferase; Provisional

 Score = 73.4 bits (180), Expect = 5e-14
 Identities = 83/340 (24%), Positives = 141/340 (41%), Gaps = 42/340 (12%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y+ + GI  LR+ IA   +   G   D +++ +T GA  A ++  + L+  E D ++ P 
Sbjct: 66  YTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESLLE-EGDEVIIPD 124

Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRA-LVVIN-PG 280
           P +  Y     +     +   L E   +  +  E+   LE      IT R  ++VIN P 
Sbjct: 125 PAFVCYVEDAKIAEAKPIRIPLREENEFQPDPDEL---LEL-----ITKRTRMIVINYPN 176

Query: 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDI 340
           NPTG  L +E  +AI D  +   + +L+DE Y+  +Y   K +   K       Y   + 
Sbjct: 177 NPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIK-------YAPDNT 229

Query: 341 SLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSP 400
            L +  S SK  +   G R G+  V      +++ I       L + I G + AS V   
Sbjct: 230 ILAN--SFSKT-FAMTGWRLGF--VIAPEQVIKDMI------KLHAYIIGNV-ASFVQIA 277

Query: 401 PKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKA 460
                 S ES+ A  + +      R K +      +  I   + +GA Y+F  I   E  
Sbjct: 278 GIEALRSKESWKAVEE-MRKEYNERRKLVLKRLKEMPHIKVFEPKGAFYVFANID--ETG 334

Query: 461 IKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTW 500
           + + +         +   LL    +V++PG+ FG+    +
Sbjct: 335 MSSED---------FAEWLLEKARVVVIPGTAFGKAGEGY 365

Length = 391

>gnl|CDD|181081 PRK07681, PRK07681, aspartate aminotransferase; Provisional

 Score = 72.9 bits (179), Expect = 8e-14
 Identities = 74/327 (22%), Positives = 126/327 (38%), Gaps = 60/327 (18%)

Query: 203 VHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLE 262
           VH+ M     +  D IL P P Y  Y   I + G T     L +   +  +   + +++ 
Sbjct: 107 VHLPMVYA--NPGDIILVPDPGYTAYETGIQMAGATSYYMPLKKENDFLPDLELIPEEI- 163

Query: 263 AAKAKGITVRALVVIN-PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEK 321
           A KAK      ++++N PGNP   +  E+  + ++ F KK  ++++ D  Y E  Y    
Sbjct: 164 ADKAK------MMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAE-FYFDGN 216

Query: 322 KFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYM----EVTGFSAEVREQIY 377
           K  SF  V      G K++  V   S+SK  Y   G R GYM    E+     + +    
Sbjct: 217 KPISFLSVP-----GAKEVG-VEINSLSKS-YSLAGSRIGYMIGNEEIVRALTQFK---- 265

Query: 378 KVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLE 437
                   SN    +   +  +          ++C +  GI      R  TL D F +  
Sbjct: 266 --------SNTDYGVFLPIQKAACAALRNG-AAFCEKNRGIYQE---RRDTLVDGFRTF- 312

Query: 438 GITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAF----YCRRLLNATGIVLVPGSGF 493
           G   +K  G+M+++  I                P  +    +   L++   +V+ PG  F
Sbjct: 313 GWNVDKPAGSMFVWAEI----------------PKGWTSLSFAYALMDRANVVVTPGHAF 356

Query: 494 GQVPGTWHFRCTILPQEDKIPAIVTRL 520
           G   G    R  ++  E+ +   V  +
Sbjct: 357 GP-HGEGFVRIALVQDEEVLQQAVENI 382

Length = 399

>gnl|CDD|181749 PRK09276, PRK09276, LL-diaminopimelate aminotransferase; Provisional

 Score = 72.6 bits (179), Expect = 1e-13
 Identities = 85/309 (27%), Positives = 129/309 (41%), Gaps = 48/309 (15%)

Query: 216 DGILCPIPQYPLYSASIALHGGTLVPYY--LDEATGWGLETSEVKKQLEAAKAKGITVRA 273
           D +L P P YP+Y       GG   PY+  L E  G+  +   + + + A KAK      
Sbjct: 118 DVVLVPDPGYPVYKIGTIFAGG--EPYFMPLKEENGFLPDLDAIPEDV-AKKAK------ 168

Query: 274 LVVIN-PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRS 332
           L+ IN P NPTG V   E    +VDF KK  +++  D  Y E +     K  SF +V   
Sbjct: 169 LMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSE-IAYDGYKPPSFLEVP-- 225

Query: 333 MGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNI-SGQ 391
              G KD+  + F S+SK  Y   G R G+    G +A++   + KV      SN+ SG 
Sbjct: 226 ---GAKDVG-IEFHSLSKT-YNMTGWRIGF--AVG-NADLIAGLGKVK-----SNVDSGV 272

Query: 392 ILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLF 451
             A  +           +    E   I      R   L +    L G+     +   Y++
Sbjct: 273 FQA--IQEAGIAALNGPQEVVEELRKI---YQERRDILVEGLRKL-GLEVEPPKATFYVW 326

Query: 452 PRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQED 511
             +  P+    A  A            LL+  G+V+ PG+GFG+  G  +FR  +   ++
Sbjct: 327 APV--PKGYTSAEFAT----------LLLDKAGVVVTPGNGFGE-YGEGYFRIALTVPDE 373

Query: 512 KIPAIVTRL 520
           +I   V R+
Sbjct: 374 RIEEAVERI 382

Length = 385

>gnl|CDD|185613 PTZ00433, PTZ00433, tyrosine aminotransferase; Provisional

 Score = 72.1 bits (177), Expect = 1e-13
 Identities = 74/343 (21%), Positives = 136/343 (39%), Gaps = 47/343 (13%)

Query: 192 DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWG 251
           ++ L  G S A+ M +  L   E D IL P P +P Y      +G  +  Y       W 
Sbjct: 106 NVVLCSGVSHAILMALTALC-DEGDNILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWE 164

Query: 252 LETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEV 311
            +  E+++ L   + K     AL++ NP NP G   + ++   I+  C++  L L++DE+
Sbjct: 165 ADLDEIRR-LVDDRTK-----ALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEI 218

Query: 312 YQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGG---YMEVTGF 368
           Y   V+        F  V+      +  +  V     +K      G R G    ++  G 
Sbjct: 219 YAGMVFNGAT----FTSVADF----DTTVPRVILGGTAK-NLVVPGWRLGWLLLVDPHGN 269

Query: 369 SAEVREQIYKVASVNL--CSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRA 426
             +  + + ++  +    CS +   +  +L+ +P     + +      +      L   A
Sbjct: 270 GGDFLDGMKRLGMLVCGPCSVVQAALGEALLNTP-----QEHLEQIVAK------LEEGA 318

Query: 427 KTLEDAFNSLEGITCNKAEGAMYLFPRIQLPE-KAIKAAEAEKTVPDAFYCRRLLNATGI 485
             L +      G++     G+M+L  R+ L + + IK+        D  +  +LL    +
Sbjct: 319 MVLYNHIGECIGLSPTMPRGSMFLMSRLDLEKFRDIKS--------DVEFYEKLLEEENV 370

Query: 486 VLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDF---HK 525
            ++PG  F  +PG    R TI    + +   V R+  F   HK
Sbjct: 371 QVLPGEIFH-MPG--FTRLTISRPVEVLREAVERIKAFCERHK 410

Length = 412

>gnl|CDD|181642 PRK09082, PRK09082, methionine aminotransferase; Validated

 Score = 71.9 bits (177), Expect = 2e-13
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 19/161 (11%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCP 221
           Y    G+  LR+ IAA      G   D + +I +T GA+ A+   +  L+R   D ++  
Sbjct: 63  YPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFAAILALVRP-GDEVIVF 121

Query: 222 IPQYPLYSASIALHGGTLVPYYL---DEATGWGLETSEVKKQLEAAKAKGITVRA-LVVI 277
            P Y  Y+ +I L GG  V   L   D    W        ++  AA    I+ R  L+++
Sbjct: 122 DPSYDSYAPAIELAGGRAVRVALQPPDFRVDW--------QRFAAA----ISPRTRLIIL 169

Query: 278 N-PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
           N P NP+G V +  + RA+        + +L+DEVY+  V+
Sbjct: 170 NTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVF 210

Length = 386

>gnl|CDD|188462 TIGR03947, viomycin_VioD, capreomycidine synthase

 Score = 71.4 bits (175), Expect = 2e-13
 Identities = 85/347 (24%), Positives = 135/347 (38%), Gaps = 56/347 (16%)

Query: 152 LDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI 211
           LD +  R       S G +GLR  IA           D + +  T G+S A+++++  L+
Sbjct: 40  LDALVFRD----GPSLGGEGLRAAIADRWR-----GGDAHVVMTTHGSSEAIYLVLTALL 90

Query: 212 RSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITV 271
           R   D ++   P Y   S      G  + P+ L    G+       +  L+A +A     
Sbjct: 91  RP-GDEVVVVDPAYHSLSHLAVATGCEVRPWPLLAVRGF-------RPDLDALRALLTPR 142

Query: 272 RALVVIN-PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVS 330
              VV+N P NPTG  +       +++   + G VLL D  + + V+             
Sbjct: 143 TRAVVVNFPHNPTGASVTPRELDELLERAARSGAVLLWDNAFADLVHDAPPLPDPSALYD 202

Query: 331 RSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTG--FSAEVREQIYKVASVNLCSNI 388
           R + +G          ++SK  +G  G R G+        +  VR + Y   S       
Sbjct: 203 RVISFG----------TLSKA-FGLPGLRVGWCVGPADLLAELVRLRDYTTLS------- 244

Query: 389 SGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAM 448
               L+ LV    +V  E  ++    R  +  + A R + L+ A    + + C   EG +
Sbjct: 245 ----LSPLVELLAEVAVEHADALIGPR--LAEARANRRRLLDWAAAHPDVVRCTPPEGGV 298

Query: 449 YLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ 495
             FPR            A+ T      CRRLL   G++LVPGS FG 
Sbjct: 299 AAFPRF--------PGHADVTD----LCRRLLARHGVLLVPGSCFGA 333

Members of this family are the enzyme capreomycidine synthase, which performs the second of two steps in the biosynthesis of 2S,3R-capreomycidine from arginine. Capreomycidine is an unusual amino acid used by non-ribosomal peptide synthases (NRPS) to make the tuberactinomycin class of peptide antibiotic. The best characterized member is VioD from the biosynthetic pathway for viomycin [Cellular processes, Biosynthesis of natural products]. Length = 359

>gnl|CDD|180537 PRK06348, PRK06348, aspartate aminotransferase; Provisional

 Score = 69.7 bits (171), Expect = 8e-13
 Identities = 75/345 (21%), Positives = 134/345 (38%), Gaps = 63/345 (18%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y+ S G   L + I              N+I  T GA   +++ +Q ++    D ++   
Sbjct: 62  YTDSGGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLALQSIL-DPGDEVIIHE 120

Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKK-QLEAAKAKG-ITVR--ALVVIN 278
           P +  Y   I + GG  +           LET E    Q+   K +  IT +  A+++ +
Sbjct: 121 PYFTPYKDQIEMVGGKPII----------LETYEEDGFQINVKKLEALITSKTKAIILNS 170

Query: 279 PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQ----ENVYVPEKKFHSFKKVSRSMG 334
           P NPTG V ++E    I     +  L +++DEVY        +VP               
Sbjct: 171 PNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMP------- 223

Query: 335 YGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILA 394
             E+ I+  SF   SK  +   G R GY+    +  E  + I +                
Sbjct: 224 --ERTITFGSF---SKD-FAMTGWRIGYVIAPDYIIETAKIINE---------------- 261

Query: 395 SLVMSPPKVGDESYESYCAERDGILSSLARRAKT-LEDAFNSLEGI---TCNKAEGAMYL 450
            +  S P +   +       RD I+  +    +  LE A+  +E I   + +  +G++Y 
Sbjct: 262 GICFSAPTISQRAAIYALKHRDTIVPLIKEEFQKRLEYAYKRIESIPNLSLHPPKGSIYA 321

Query: 451 FPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ 495
           F  I+  +  + + E         +C +LL    ++++PG  FG+
Sbjct: 322 FINIK--KTGLSSVE---------FCEKLLKEAHVLVIPGKAFGE 355

Length = 384

>gnl|CDD|181595 PRK08960, PRK08960, hypothetical protein; Provisional

 Score = 68.9 bits (169), Expect = 1e-12
 Identities = 91/336 (27%), Positives = 135/336 (40%), Gaps = 49/336 (14%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y+ ++G+  LR+ IA     R G   DP  I +T G S A+ +   LL+       L   
Sbjct: 65  YTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLLVDP-GKHWLLAD 123

Query: 223 PQYPLYSASIALHGGT--LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPG 280
           P YP     + L  G   LVP  +   + + L  + V++   A      TV ALV  +P 
Sbjct: 124 PGYPCNRHFLRLVEGAAQLVP--VGPDSRYQLTPALVERHWNAD-----TVGALVA-SPA 175

Query: 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDI 340
           NPTG +L+ +   A+    +  G  L+ DE+Y    Y       S  +V         D 
Sbjct: 176 NPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTY--GVDAASVLEVD--------DD 225

Query: 341 SLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA-SVNLCSNISGQILASLVMS 399
           + V   S SK Y+G  G R G++      A V E + K+A ++ + ++   Q  A     
Sbjct: 226 AFV-LNSFSK-YFGMTGWRLGWLVAP--PAAVPE-LEKLAQNLYISASTPAQHAALACFE 280

Query: 400 PPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEK 459
           P     E+     A R    +  ARR   L  A   L      + +GA YL+        
Sbjct: 281 P-----ETLAILEARR----AEFARRRDFLLPALRELGFGIAVEPQGAFYLY-------- 323

Query: 460 AIKAAEAEKTVPDAF-YCRRLLNATGIVLVPGSGFG 494
               A+      DAF +CR  L    +   PG  FG
Sbjct: 324 ----ADISAFGGDAFAFCRHFLETEHVAFTPGLDFG 355

Length = 387

>gnl|CDD|235742 PRK06207, PRK06207, aspartate aminotransferase; Provisional

 Score = 67.5 bits (165), Expect = 4e-12
 Identities = 77/340 (22%), Positives = 133/340 (39%), Gaps = 48/340 (14%)

Query: 162 AYSHSQGIKGLRDTIAAGIEARDGFPADPND-IFLTDGASPAVHMMMQLLIRSENDGILC 220
           AY+  +G   +R+ +AA + A  G P D  D + +T G   A+ + +   + +  D +  
Sbjct: 73  AYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALFLAVAATV-ARGDKVAI 131

Query: 221 PIPQYPLYSASIALHGGTLVPY---YLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI 277
             P Y      +    G +VP    YL      GL+      QLE A   G  VR  +  
Sbjct: 132 VQPDYFANRKLVEFFEGEMVPVQLDYLSADKRAGLDL----DQLEEAFKAG--VRVFLFS 185

Query: 278 NPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE 337
           NP NP G V + E    I    ++ G  ++ D++Y   +Y      H      R++    
Sbjct: 186 NPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTH-----LRALPIDP 240

Query: 338 KDISLVSFQSVSKGYYGECGKRGGYMEVTGF-SAEVREQIYKV-ASVNL-CSNISGQILA 394
           +++  ++    SK          GY     F S  + +++ K+ A V+L  +  S  +L 
Sbjct: 241 ENV--ITIMGPSK-----TESLSGYRLGVAFGSPAIIDRMEKLQAIVSLRAAGYSQAVLR 293

Query: 395 SLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRI 454
           +    P     +    + A RD +L                +EG+     +   YLFPR 
Sbjct: 294 TWFSEPDGWMKDRIARHQAIRDDLLR-----------VLRGVEGVFVRAPQAGSYLFPR- 341

Query: 455 QLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFG 494
            LP  A+   +         + + L    G+++ PG+ F 
Sbjct: 342 -LPRLAVSLHD---------FVKILRLQAGVIVTPGTEFS 371

Length = 405

>gnl|CDD|163313 TIGR03537, DapC, succinyldiaminopimelate transaminase

 Score = 67.2 bits (164), Expect = 5e-12
 Identities = 90/386 (23%), Positives = 153/386 (39%), Gaps = 64/386 (16%)

Query: 143 DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASP 201
             I +A  ++D +P      Y  + G K LR+ I+   E R G   DP+  +  + G+  
Sbjct: 16  PFIRKA--LIDAVP--EVSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKE 71

Query: 202 AVHMMMQLLIRSEND--GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKK 259
           A+     + I  E D   ++   P YP+Y       GG      L +  G+ L   +V+K
Sbjct: 72  AIFHFPLVFIDPEEDRRRVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLRLEKVEK 131

Query: 260 QLEAAKAKGITVRALVV-IN-PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
                    I     +V IN P NPTG        +  +  C++ G++L +DE Y E +Y
Sbjct: 132 --------SILEETKIVWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTE-IY 182

Query: 318 VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYM----EVTGFSAEVR 373
             E   HS  +V           ++++F S+SK   G  G R G++    ++  F  ++R
Sbjct: 183 FGEPP-HSALEVGIE--------NVLAFHSLSK-RSGMTGYRSGFVAGDEKLISFLRKLR 232

Query: 374 EQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAF 433
              + VAS               V +  K      +++  ER  I     +R + L   F
Sbjct: 233 AN-FGVAS------------PDFVQAAAKAAWSD-DNHVLERRKIF----KRKRDLFIEF 274

Query: 434 NSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGF 493
            +  G+     +   YL+  +++P            +    Y  RLL   GIV+ PG  F
Sbjct: 275 FNKVGLEYLYPDATFYLW--VKVPS----------GIDAKDYALRLLEN-GIVVAPGENF 321

Query: 494 GQVPGTWHFRCTILPQEDKIPAIVTR 519
           G      + R  ++P  ++    +  
Sbjct: 322 GS-GEEGYVRVALVPTLEECEEALRL 346

The four sequences which make up the seed for this model are not closely related, although they are all members of the pfam00155 family of aminotransferases and are more closely related to each other than to anything else. Additionally, all of them are found in the vicinity of genes involved in the biosynthesis of lysine via the diaminopimelate pathway (GenProp0125), although this amount to a separation of 12 genes in the case of Sulfurihydrogenibium azorense Az-Fu1. None of these genomes contain another strong candidate for this role in the pathway. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. Length = 350

>gnl|CDD|236119 PRK07865, PRK07865, N-succinyldiaminopimelate aminotransferase; Reviewed

 Score = 66.5 bits (163), Expect = 9e-12
 Identities = 43/154 (27%), Positives = 64/154 (41%), Gaps = 21/154 (13%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPA-DPNDIFLTDGASPAVHMMMQLLIRSENDGILCP 221
           Y  + G   LR+ I   +  R G    DP  +    G+   V  +  LL     D ++ P
Sbjct: 58  YPTTAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAWLPTLLGLGPGDVVVIP 117

Query: 222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVIN-PG 280
              YP Y     L G T+V    D  T  G +                   AL+ +N P 
Sbjct: 118 ELAYPTYEVGARLAGATVVRA--DSLTELGPQRP-----------------ALIWLNSPS 158

Query: 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE 314
           NPTG+VL  ++ R +V + ++ G V+ +DE Y E
Sbjct: 159 NPTGRVLGVDHLRKVVAWARERGAVVASDECYLE 192

Length = 364

>gnl|CDD|178004 PLN02376, PLN02376, 1-aminocyclopropane-1-carboxylate synthase

 Score = 65.1 bits (158), Expect = 3e-11
 Identities = 84/365 (23%), Positives = 148/365 (40%), Gaps = 23/365 (6%)

Query: 163 YSHSQGIKGLRDTIAAGI-EARDG-FPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC 220
           +    G+K  R  IA  + +AR G    DP  + ++ GA+ A   +M   +    D  L 
Sbjct: 90  FQDYHGLKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIM-FCLADPGDVFLI 148

Query: 221 PIPQYPLYSASIALHGGT-LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP 279
           P P Y  +   +    G  ++P     +  + L         + A+     V+ L++ NP
Sbjct: 149 PSPYYAAFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNP 208

Query: 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKD 339
            NP G +L ++    +V F  ++ + L+ DE+Y   V+     F S  +V   +   E +
Sbjct: 209 SNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFA-GGDFVSVAEVVNDVDISEVN 267

Query: 340 ISLVSF-QSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVM 398
           + L+    S+SK   G  G R G   V  F+  V     K++S  L S+ +  +LAS++ 
Sbjct: 268 VDLIHIVYSLSKD-MGLPGFRVGI--VYSFNDSVVSCARKMSSFGLVSSQTQLMLASMLS 324

Query: 399 SPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPE 458
               V +   ES  + R GI      R K         + I C  +   ++ +  ++   
Sbjct: 325 DDQFVDNFLMES--SRRLGI------RHKVFTTGIKKAD-IACLTSNAGLFAWMDLRHLL 375

Query: 459 KAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVT 518
           +   + E+E  +      +  LN +     PGS F      W   C     +D +   + 
Sbjct: 376 RDRNSFESEIELWHIIIDKVKLNVS-----PGSSFRCTEPGWFRICFANMDDDTLHVALG 430

Query: 519 RLTDF 523
           R+ DF
Sbjct: 431 RIQDF 435

Length = 496

>gnl|CDD|223157 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

 Score = 63.9 bits (156), Expect = 5e-11
 Identities = 48/191 (25%), Positives = 89/191 (46%), Gaps = 27/191 (14%)

Query: 189 DPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEAT 248
           DP ++ + +G+   + ++++  +    D +L P P + +Y  +  L G  +V   L E  
Sbjct: 74  DPENVLVGNGSDELIELLVRAFVEPG-DTVLIPEPTFSMYEIAAQLAGAEVVKVPLKE-- 130

Query: 249 GWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLA 308
            + L+   +   L A + K    + + + NP NPTG +L  E  RA+++   + GLV++ 
Sbjct: 131 -FRLD---LDAILAAIRDK---TKLVFLCNPNNPTGTLLPREELRALLEALPEGGLVVI- 182

Query: 309 DEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGF 368
           DE Y E  + PE           S+   +   +L+  ++ SK  +G  G R GY      
Sbjct: 183 DEAYIE--FSPES----------SLELLKYPPNLIVLRTFSK-AFGLAGLRVGYA---IA 226

Query: 369 SAEVREQIYKV 379
           + E+   + KV
Sbjct: 227 NPELIAALNKV 237

Length = 356

>gnl|CDD|234249 TIGR03538, DapC_gpp, succinyldiaminopimelate transaminase

 Score = 64.3 bits (157), Expect = 5e-11
 Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 14/159 (8%)

Query: 162 AYSHSQGIKGLRDTIAAGIEARDGFPA--DPND-IFLTDGASPAVHMMMQLLI-RSENDG 217
            Y  ++G+  LR  IA  +E R   P   DP   +   +G   A+    Q +I   +   
Sbjct: 59  TYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFAFAQAVINPGQAPL 118

Query: 218 ILCPIPQYPLYSASIALHGGTLVPYYL--DEATGWGLETSEVKKQLEAAKAKGITVRALV 275
           ++ P P Y +Y  +  L G    PY+L      G+  +   V + +          + L 
Sbjct: 119 VVMPNPFYQIYEGAALLAGAE--PYFLNCTAENGFLPDFDAVPESVWR------RCQLLF 170

Query: 276 VINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE 314
           V +PGNPTG VL+ +  + +++   + G ++ +DE Y E
Sbjct: 171 VCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSE 209

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Length = 393

>gnl|CDD|235985 PRK07309, PRK07309, aromatic amino acid aminotransferase; Validated

 Score = 63.2 bits (154), Expect = 1e-10
 Identities = 51/164 (31%), Positives = 79/164 (48%), Gaps = 13/164 (7%)

Query: 163 YSHSQGIKG---LRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGI 218
            SH  G+ G   LR   A  ++ +      P N+I +T GA+ A+   +   I    D +
Sbjct: 60  QSHYTGMAGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSASL-TAILEPGDKV 118

Query: 219 LCPIPQYPLYSASIALHGGTLVPYYLD-EATGWGLETSEVKKQLEAA-KAKGITVRALVV 276
           L P P YP Y   + L G  +V   +D     + L T E+   LE A   +G  ++A+++
Sbjct: 119 LLPAPAYPGYEPIVNLVGAEIV--EIDTTENDFVL-TPEM---LEKAILEQGDKLKAVIL 172

Query: 277 INPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPE 320
             P NPTG   + E  +A+ D  KK  + +++DEVY E  Y  E
Sbjct: 173 NYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGE 216

Length = 391

>gnl|CDD|178069 PLN02450, PLN02450, 1-aminocyclopropane-1-carboxylate synthase

 Score = 63.2 bits (154), Expect = 1e-10
 Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 3/154 (1%)

Query: 189 DPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGT-LVPYYLDEA 247
           DPN + LT GA+ A   +M  L     D  L P P YP +   +    G  +VP +   +
Sbjct: 110 DPNKLVLTAGATSANETLMFCLAEP-GDAFLLPTPYYPGFDRDLKWRTGVEIVPIHCSSS 168

Query: 248 TGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLL 307
            G+ +  S +++  + A+   + V+ +++ NP NP G          +VDF   + + L+
Sbjct: 169 NGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLI 228

Query: 308 ADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDIS 341
           +DE+Y   V+     F S  +V +       D+S
Sbjct: 229 SDEIYSGTVF-DSPGFVSVMEVLKDRKLENTDVS 261

Length = 468

>gnl|CDD|236393 PRK09147, PRK09147, succinyldiaminopimelate transaminase; Provisional

 Score = 59.9 bits (146), Expect = 1e-09
 Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 14/159 (8%)

Query: 162 AYSHSQGIKGLRDTIAAGIEARDGFPA-DPNDIFL-TDGASPAVHMMMQLLIRSENDG-- 217
           +Y  + G+  LR+ IAA +E R G PA DP    L  +G+  A+    Q +I  +  G  
Sbjct: 60  SYPTTAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSREALFAFAQTVIDRDGPGPL 119

Query: 218 ILCPIPQYPLYSASIALHGGTLVPYYL--DEATGWGLETSEVKKQLEAAKAKGITVRALV 275
           ++CP P Y +Y  +  L G    PY+L  D A  +  +   V  ++ A        + L 
Sbjct: 120 VVCPNPFYQIYEGAALLAGAE--PYFLNCDPANNFAPDFDAVPAEVWAR------TQLLF 171

Query: 276 VINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE 314
           V +PGNPTG VL  ++ + +     + G V+ +DE Y E
Sbjct: 172 VCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSE 210

Length = 396

>gnl|CDD|233289 TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phosphate decarboxylase

 Score = 59.5 bits (145), Expect = 1e-09
 Identities = 40/157 (25%), Positives = 59/157 (37%), Gaps = 26/157 (16%)

Query: 154 QIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS 213
            IP  A   Y        LR   AA      G PA    +   +GA  A++++ +LL   
Sbjct: 35  PIPLSAWARYP-DPEYDELRAAAAA----YYGLPAA--SVLPVNGAQEAIYLLPRLLAPG 87

Query: 214 ENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRA 273
               +L   P Y  Y+ +    G  +V     +             +L AA         
Sbjct: 88  ---RVLVLAPTYSEYARAWRAAGHEVVELPDLD-------------RLPAALE---EADL 128

Query: 274 LVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADE 310
           LVV NP NPTG+++  E   A+    +  G  L+ DE
Sbjct: 129 LVVCNPNNPTGRLIPPETLLALAARLRARGGWLVVDE 165

This family contains pyridoxal phosphate-binding class II aminotransferases (see pfam00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 330

>gnl|CDD|213963 TIGR04350, C_S_lyase_PatB, putative C-S lyase

 Score = 59.3 bits (144), Expect = 2e-09
 Identities = 37/151 (24%), Positives = 70/151 (46%), Gaps = 8/151 (5%)

Query: 172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS 231
           L   +   +  R G+  DP  I    G  P++   ++ L     +G++   P YP + ++
Sbjct: 65  LYAAVINWLAQRHGWQIDPEWIVFLPGVVPSLFAAVRALTA-PGEGVIVQTPVYPPFLSA 123

Query: 232 IALHGGTLVPYYLDEATG-WGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE 290
           +  +G  LV   L    G +  +     + LE A  +    R L++ +P NP G+V   E
Sbjct: 124 VKSNGRELVLNPLKLDPGRYRFDL----EDLEDAITEK--ARLLLLCSPHNPVGRVWTRE 177

Query: 291 NQRAIVDFCKKEGLVLLADEVYQENVYVPEK 321
               + + C +  +V+++DE++ + VY P K
Sbjct: 178 ELTRLAELCLRHNVVVVSDEIHADLVYPPNK 208

Members of this subfamily are probable C-S lyases from a family of pyridoxal phosphate-dependent enzymes that tend to be (mis)annotated as probable aminotransferases. One member is PatB of Bacillus subtilis, a proven C-S-lyase. Another is the virulence factor cystalysin from Treponema denticola, whose hemolysin activity may stem from H2S production. Members of the seed alignment occur next to examples of the enzyme 5-histidylcysteine sulfoxide synthase, from ovothiol A biosynthesis, and would be expected to perform a C-S cleavage of 5-histidylcysteine sulfoxide to leave 1-methyl-4-mercaptohistidine (ovothiol A). Length = 384

>gnl|CDD|181268 PRK08175, PRK08175, aminotransferase; Validated

 Score = 57.0 bits (138), Expect = 1e-08
 Identities = 94/370 (25%), Positives = 152/370 (41%), Gaps = 69/370 (18%)

Query: 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAV-HMMMQLLIRSENDG 217
           T  YS S+GI  LR  I+   + R     DP  +  +T G+   + H+M+  L     D 
Sbjct: 60  THGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLAHLMLATLDHG--DT 117

Query: 218 ILCPIPQYPL--YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALV 275
           +L P P YP+  Y A IA      VP          +E  +   +LE A  +      ++
Sbjct: 118 VLVPNPSYPIHIYGAVIAGAQVRSVPL---------VEGVDFFNELERAIRESYPKPKMM 168

Query: 276 VIN-PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG 334
           ++  P NPT Q +  E    +V   K+  ++++ D  Y + V      +  +K  S    
Sbjct: 169 ILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIV------YDGWKAPSIMQV 222

Query: 335 YGEKDISLVSFQSVSKGYYGECGKRGGYM--EVTGFSAEVREQIY---------KVASVN 383
            G KD++ V F ++SK  Y   G R G+M       SA  R + Y         +VA++ 
Sbjct: 223 PGAKDVA-VEFFTLSKS-YNMAGWRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAI- 279

Query: 384 LCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNK 443
                     A+L     +   +  E Y   RD +L       K L +A     G     
Sbjct: 280 ----------AAL-EGDQQCVRDIAEQYKRRRD-VL------VKGLHEA-----GWMVEM 316

Query: 444 AEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFR 503
            + +MY++ +I  P  A+ + E         + ++LLN   + + PG GFG   G  H R
Sbjct: 317 PKASMYVWAKIPEPYAAMGSLE---------FAKKLLNEAKVCVSPGIGFGDY-GDTHVR 366

Query: 504 CTILPQEDKI 513
             ++   D+I
Sbjct: 367 FALIENRDRI 376

Length = 395

>gnl|CDD|233290 TIGR01141, hisC, histidinol-phosphate aminotransferase

 Score = 56.1 bits (136), Expect = 2e-08
 Identities = 77/347 (22%), Positives = 138/347 (39%), Gaps = 68/347 (19%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS---ENDGIL 219
           Y        L+  +A      D +  DP  I L +G+   +    +LLIR+     D +L
Sbjct: 51  YPDPDP-AELKQALA------DYYGVDPEQILLGNGSDEII----ELLIRAFLEPGDAVL 99

Query: 220 CPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP 279
            P P Y +Y  S  +HG  +V   LDE     L+  ++   L A   K    + + + +P
Sbjct: 100 VPPPTYSMYEISAKIHGAEVVKVPLDE--DGQLDLEDI---LVAIDDK---PKLVFLCSP 151

Query: 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKD 339
            NPTG +L+  +  A+++   ++ LV++ DE Y E  +  E            +    + 
Sbjct: 152 NNPTGNLLSRSDIEAVLERTPEDALVVV-DEAYGE--FSGEPST---------LPLLAEY 199

Query: 340 ISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMS 399
            +L+  +++SK  +G  G R GY      +AE+ + + KV +    S ++ Q  A   + 
Sbjct: 200 PNLIVLRTLSKA-FGLAGLRIGY---AIANAEIIDALNKVRAPFNLSRLA-QAAAIAALR 254

Query: 400 PPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEK 459
                +++ E   AER+            L D    L G+    ++ A ++  R      
Sbjct: 255 DDDFIEKTVEEINAERE-----------RLYDGLKKLPGLEVYPSD-ANFVLIRFPRDAD 302

Query: 460 AIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTI 506
           A                  LL   GI++   + +  +P     R T+
Sbjct: 303 A--------------LFEALLEK-GIIVRDLNSYPGLPN--CLRITV 332

Alternate names: histidinol-phosphate transaminase; imidazole acetol-phosphate transaminase Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme [Amino acid biosynthesis, Histidine family]. Length = 346

>gnl|CDD|163316 TIGR03542, DAPAT_plant, LL-diaminopimelate aminotransferase

 Score = 55.1 bits (133), Expect = 4e-08
 Identities = 90/369 (24%), Positives = 145/369 (39%), Gaps = 52/369 (14%)

Query: 163 YSHSQGIKGLRDTIAAGI-EARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCP 221
           Y   QG   LR+ IA      R     DP +IF++DGA   V  +  L     ++ +   
Sbjct: 71  YGPEQGYPFLREAIAENDYRGR----IDPEEIFISDGAKCDVFRLQSLF--GPDNTVAVQ 124

Query: 222 IPQYPLYSASIALHGGTLVPYYLDEATGW-GLE----TSEVKKQLEAAKAKGITVRALVV 276
            P YP Y  S  + G   V   LD+   +  +     T+E     E  +   I +  + +
Sbjct: 125 DPVYPAYLDSNVMAGRAGV---LDDDGRYSKITYLPCTAENNFIPELPEEPHIDI--IYL 179

Query: 277 INPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKF-HSFKKVSRSMGY 335
            +P NPTG VL +E  + +VD+  + G ++L D  Y  + ++ +    HS  ++      
Sbjct: 180 CSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAY--SAFISDPSLPHSIFEIP----- 232

Query: 336 GEKDISLVSFQSVSKGYYGECGKRGGYM----EVTGFSAEVREQIYKVASVNLCSNISGQ 391
           G +  + + F+S SK   G  G R G+     E+T        Q ++      C+  +G 
Sbjct: 233 GARFCA-IEFRSFSKT-AGFTGVRLGWTVVPKELTYADGHSVIQDWE---RRQCTKFNG- 286

Query: 392 ILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLF 451
             AS  +        + E      + I S     A+ L  A  +  G      E A YL+
Sbjct: 287 --ASYPVQRAAEAGYAGEGLQPILEAI-SYYMENARILRKALEA-AGFKVYGGEHAPYLW 342

Query: 452 PRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQED 511
             ++ PE          +  D F    LL    +V  PGSGFG   G    R +   + +
Sbjct: 343 --VKTPEGI--------SSWDFF--DFLLYEYHVVGTPGSGFGPS-GEGFVRFSAFGKRE 389

Query: 512 KIPAIVTRL 520
            I     R+
Sbjct: 390 NIIEACERI 398

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Length = 402

>gnl|CDD|184829 PRK14807, PRK14807, histidinol-phosphate aminotransferase; Provisional

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 32/179 (17%)

Query: 188 ADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEA 247
             P +IF+ +G+   +H++M   I ++ D ++ P P + +YS    + G   +P  L E 
Sbjct: 74  VVPTNIFVGNGSDEIIHLIMLAFI-NKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLKED 132

Query: 248 TGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLAEENQRAIVDFCKKEGLVL 306
             + +      K +E  + K      LV + NP NPTG V+  E+   I++  K  G+V+
Sbjct: 133 YTYDVG--SFIKVIEKYQPK------LVFLCNPNNPTGSVIEREDIIKIIE--KSRGIVV 182

Query: 307 LADEVYQE---NVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGY 362
           + DE Y E   N  V                   +  +L+  +++SK  +G  G R GY
Sbjct: 183 V-DEAYFEFYGNTIVD---------------VINEFENLIVLRTLSKA-FGLAGLRVGY 224

Length = 351

>gnl|CDD|236316 PRK08636, PRK08636, aspartate aminotransferase; Provisional

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 88/357 (24%), Positives = 155/357 (43%), Gaps = 36/357 (10%)

Query: 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPA-VHMMMQLLIRSENDG 217
           T  YS S+GI  LR  I    + +     DP  ++  T G+    VH++    I +  D 
Sbjct: 64  THGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQA--ITNPGDV 121

Query: 218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI 277
            + P P YP++S +  L GG +    L+    + L+  +  + LE A  +       VV+
Sbjct: 122 AIVPDPAYPIHSQAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVV 181

Query: 278 N-PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG 336
           N P NPT   + +     +V   KKE   +++D  Y       +  F  +K  S     G
Sbjct: 182 NFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYA------DITFDGYKTPSILEVEG 235

Query: 337 EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASL 396
            KD+++ S+ ++SK  Y   G R G++          ++I       + + I  Q+ A++
Sbjct: 236 AKDVAVESY-TLSKS-YNMAGWRVGFVVGNKKLVGALKKIKSWLDYGMFTPI--QVAATI 291

Query: 397 VMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQL 456
            +     GD+S    C E   I  +  +R   L ++F +  G    K   +M+++ +I  
Sbjct: 292 ALD----GDQS----CVEE--IRETYRKRRDVLIESFAN-AGWELQKPRASMFVWAKI-- 338

Query: 457 PEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKI 513
           PE A      E       + ++LL    + + PG GFG+  G  + R  ++  E++I
Sbjct: 339 PEPARHLGSLE-------FSKQLLTEAKVAVSPGIGFGEY-GDEYVRIALIENENRI 387

Length = 403

>gnl|CDD|215089 PLN00175, PLN00175, aminotransferase family protein; Provisional

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 9/156 (5%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCP 221
           Y+   G+  L   IA   +   G   DP  ++ +T G + A+   +  LI   ++ IL  
Sbjct: 87  YARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFA 146

Query: 222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGN 281
            P Y  Y A++++ G  +    L        + +  + +L+AA       RA+++  P N
Sbjct: 147 -PFYDSYEATLSMAGAKIKTVTLRPP-----DFAVPEDELKAAFTS--KTRAILINTPHN 198

Query: 282 PTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
           PTG++   E    I   CK+  ++   DEVY +  +
Sbjct: 199 PTGKMFTREELELIASLCKENDVLAFTDEVYDKLAF 234

Length = 413

>gnl|CDD|180317 PRK05942, PRK05942, aspartate aminotransferase; Provisional

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 71/283 (25%), Positives = 107/283 (37%), Gaps = 45/283 (15%)

Query: 216 DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALV 275
           D +L P P YP +     + G  + P  L     W ++ S + +++ A +AK      ++
Sbjct: 122 DVVLVPSPAYPAHFRGPLIAGAQIYPIILKPENDWLIDLSSIPEEV-AQQAK------IL 174

Query: 276 VIN-PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG 334
             N P NPT      E    IV F +K  ++L+ D  Y       E  F  ++  S    
Sbjct: 175 YFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYA------ELAFDGYQPTSLLEI 228

Query: 335 YGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISG--QI 392
            G KDI  V F ++SK  Y   G R G+  V G    +  Q  +    NL   I    Q 
Sbjct: 229 PGAKDIG-VEFHTLSKT-YNMAGWRVGF--VVGNRHII--QGLRTLKTNLDYGIFSALQK 282

Query: 393 LASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFP 452
            A   +  P    +SY     ER         R   L      L G      +  MYL+ 
Sbjct: 283 AAETALQLP----DSYLQQVQER------YRTRRDFLIQGLGEL-GWNIPPTKATMYLW- 330

Query: 453 RIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ 495
            +  P            +    +   +L  TG+V+ PG+ FG+
Sbjct: 331 -VPCP----------VGMGSTDFALNVLQKTGVVVTPGNAFGE 362

Length = 394

>gnl|CDD|235989 PRK07324, PRK07324, transaminase; Validated

 Score = 52.6 bits (127), Expect = 2e-07
 Identities = 78/325 (24%), Positives = 124/325 (38%), Gaps = 66/325 (20%)

Query: 189 DPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYP-LYSASIALHGGTLVPYY-LDE 246
            P +I  T+GA+ A  +++  L+    D ++   P Y  LY    +L  G  V Y+ L E
Sbjct: 79  KPENILQTNGATGANFLVLYALVEPG-DHVISVYPTYQQLYDIPESL--GAEVDYWQLKE 135

Query: 247 ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVL 306
             GW  +  E++ +L     K I +      N  NPTG ++       IV+  +     +
Sbjct: 136 ENGWLPDLDELR-RLVRPNTKLICIN-----NANNPTGALMDRAYLEEIVEIARSVDAYV 189

Query: 307 LADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVT 366
           L+DEVY        +               EK IS  S    SK  Y   G R G+    
Sbjct: 190 LSDEVY--------RPLDEDGSTPSIADLYEKGISTNSM---SKT-YSLPGIRVGW---I 234

Query: 367 GFSAEVREQIYKVASVNL-CSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425
             + EV + + K     + C+ +   +LASL +                RD I   L R 
Sbjct: 235 AANEEVIDILRKYRDYTMICAGVFDDMLASLAL--------------EHRDAI---LERN 277

Query: 426 AKTLEDAFNSLEG-------ITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRR 478
            K +      L+        ++  K +     F ++ +              P   +C +
Sbjct: 278 RKIVRTNLAILDEWVAKEPRVSYVKPKAVSTSFVKLDVDM------------PSEDFCLK 325

Query: 479 LLNATGIVLVPGSGFGQVPGTWHFR 503
           LL  TG++LVPG+ F  + G  H R
Sbjct: 326 LLKETGVLLVPGNRFD-LEG--HVR 347

Length = 373

>gnl|CDD|180947 PRK07366, PRK07366, succinyldiaminopimelate transaminase; Validated

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 81/342 (23%), Positives = 134/342 (39%), Gaps = 48/342 (14%)

Query: 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGIL 219
           T  Y    G    R+  A   E R G   DP    L    S      + L + +  D  L
Sbjct: 61  THGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTAHLPLAVLNPGDFAL 120

Query: 220 CPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP 279
              P YP ++  + L GG + P  L     +    +++  ++  A+A     R +V+  P
Sbjct: 121 LLDPGYPSHAGGVYLAGGQIYPMPLRAENDFLPVFADIPTEV-LAQA-----RLMVLSYP 174

Query: 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKD 339
            NPT  +      +  V FC++  LVL+ D  Y + V+  E +  S  +        EK 
Sbjct: 175 HNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADP-----EKS 229

Query: 340 ISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVRE------QIYKVASVNLCSNISGQIL 393
           +S + F ++SK Y       GG+    GF+    +      Q+  V   N    I    +
Sbjct: 230 VS-IEFFTLSKSY-----NMGGFR--IGFAIGNAQLIQALRQVKAVVDFNQYRGILNGAI 281

Query: 394 ASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPR 453
           A+L   P     ++ + +   RD  +++L +             G      E  MY++  
Sbjct: 282 AALT-GPQATVQQTVQIFRQRRDAFINALHQI------------GWPVPLPEATMYVWA- 327

Query: 454 IQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ 495
            +LPE   +    E       +C +L+  TG+   PGSGFG+
Sbjct: 328 -KLPE-PWQGNSVE-------FCTQLVAQTGVAASPGSGFGK 360

Length = 388

>gnl|CDD|183514 PRK12414, PRK12414, putative aminotransferase; Provisional

 Score = 52.5 bits (126), Expect = 3e-07
 Identities = 57/221 (25%), Positives = 93/221 (42%), Gaps = 26/221 (11%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCP 221
           Y+   GI  LR+ +A   E   G   DP  ++ +   AS  ++  +  L+    D ++  
Sbjct: 62  YAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYAAISALVHP-GDEVIYF 120

Query: 222 IPQYPLYSASIALHGGTLVPYYL---DEATGWGLETSEVKKQLEAAKAKGITVRALVVIN 278
            P +  Y+  + L G T V   L   D    W           E A A     R ++V  
Sbjct: 121 EPSFDSYAPIVRLQGATPVAIKLSPEDFRVNWD----------EVAAAITPRTRMIIVNT 170

Query: 279 PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEK 338
           P NP+  V +  +   +    +   +V+L+DEVY E+V     + HS   ++R     E+
Sbjct: 171 PHNPSATVFSAADLARLAQLTRNTDIVILSDEVY-EHVVFDGARHHS---MARHRELAER 226

Query: 339 DISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV 379
            + + SF    K Y+   G R GY       AE+ ++I KV
Sbjct: 227 SVIVSSF---GKSYH-VTGWRVGYCLA---PAELMDEIRKV 260

Length = 384

>gnl|CDD|235772 PRK06290, PRK06290, aspartate aminotransferase; Provisional

 Score = 52.7 bits (127), Expect = 3e-07
 Identities = 79/334 (23%), Positives = 129/334 (38%), Gaps = 57/334 (17%)

Query: 168 GIKGLRDTIAAGIEARDGFPA-DP-NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQY 225
           GI+  ++  A  +E   G    DP  ++  + G+ PA+ M+    I +  D  L  +P Y
Sbjct: 82  GIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPALAMLPSCFI-NPGDVTLMTVPGY 140

Query: 226 PLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVIN-PGNPTG 284
           P+       +GG +    L E   +  +   + K +   KAK      L+ +N P NPTG
Sbjct: 141 PVTGTHTKYYGGEVYNLPLLEENNFLPDLDSIPKDI-KEKAK------LLYLNYPNNPTG 193

Query: 285 QVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVS 344
            V  +E    +VDF K+  ++++ D  Y    +  + K  SF  V      G K++  V 
Sbjct: 194 AVATKEFYEEVVDFAKENNIIVVQDAAYAALTF--DGKPLSFLSVP-----GAKEVG-VE 245

Query: 345 FQSVSKGYYGECGKRGGYME-----VTGFSAEVREQIYKVASVNLCSNISGQILASLVMS 399
             S+SK  Y   G R  ++      V  F+  V++           +N SGQ +A     
Sbjct: 246 IHSLSKA-YNMTGWRLAFVVGNELIVKAFAT-VKD-----------NNDSGQFIAI---- 288

Query: 400 PPKVGDESYESYCAERDGILSSLA----RRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQ 455
             K G      Y  +   I   +     RR   L    N + G       G  YL+ +  
Sbjct: 289 -QKAG-----IYALDHPEITEKIREKYSRRLDKLVKILNEV-GFKAEMPGGTFYLYVKA- 340

Query: 456 LPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVP 489
              K  K+    +   +    + L+    I  VP
Sbjct: 341 --PKGTKSGIKFENAEEF--SQYLIKEKLISTVP 370

Length = 410

>gnl|CDD|235749 PRK06225, PRK06225, aspartate aminotransferase; Provisional

 Score = 51.7 bits (124), Expect = 4e-07
 Identities = 36/181 (19%), Positives = 72/181 (39%), Gaps = 18/181 (9%)

Query: 136 TQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFL 195
           T  L   + +  A  ++  I       Y   +G   LR+ I   +        D ++  +
Sbjct: 37  TNHLGPHEEVREA--MIRCIEEGEYCKYPPPEGFPELRELILKDLGL------DDDEALI 88

Query: 196 TDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTL--VPYYLDEATGWGLE 253
           T GA+ +++++M+  +   ++ +    P Y +     +  G  +  VP Y  E   + L 
Sbjct: 89  TAGATESLYLVMRAFLSPGDNAVTPD-PGYLIIDNFASRFGAEVIEVPIY-SEECNYKLT 146

Query: 254 TSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQ 313
              VK+ ++         R + +I+P NP G    EE  +   +  +     LL D  Y+
Sbjct: 147 PELVKENMDE------NTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYR 200

Query: 314 E 314
           +
Sbjct: 201 D 201

Length = 380

>gnl|CDD|181580 PRK08912, PRK08912, hypothetical protein; Provisional

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 13/153 (8%)

Query: 168 GIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYP 226
           G+  LR  +AA      G   DP  ++ +T GA+ A+   +  L+    D ++   P Y 
Sbjct: 64  GLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAALLALVEP-GDEVVLFQPLYD 122

Query: 227 LYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT--VRALVVINPGNPTG 284
            Y   I   GG      L E   W L          AA A   +   +A+++ NP NP G
Sbjct: 123 AYLPLIRRAGGVPRLVRL-EPPHWRLP--------RAALAAAFSPRTKAVLLNNPLNPAG 173

Query: 285 QVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
           +V   E    + +FC++   V + DEV++  V+
Sbjct: 174 KVFPREELALLAEFCQRHDAVAICDEVWEHVVF 206

Length = 387

>gnl|CDD|236517 PRK09440, avtA, valine--pyruvate transaminase; Provisional

 Score = 49.1 bits (118), Expect = 3e-06
 Identities = 46/168 (27%), Positives = 67/168 (39%), Gaps = 22/168 (13%)

Query: 157 GRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND 216
             A G Y   QG   L + +AA +  R G+   P +I LT+G+  A   +  L      D
Sbjct: 64  TEALGNYDGPQGKDELIEALAALLNERYGWNISPQNIALTNGSQSAFFYLFNLFAGRRAD 123

Query: 217 G----ILCPI-PQYPLYSASIALHGGTLVPYY--LDEATGWGLETSEVK-----KQLEAA 264
           G    IL P+ P+Y  Y A   L     V Y   ++      L   + K     + L   
Sbjct: 124 GSLKKILFPLAPEYIGY-ADAGLEEDLFVSYRPNIEL-----LPEGQFKYHVDFEHLHID 177

Query: 265 KAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVY 312
           +       A+ V  P NPTG VL +E    +    ++  + LL D  Y
Sbjct: 178 E----DTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAY 221

Length = 416

>gnl|CDD|184830 PRK14809, PRK14809, histidinol-phosphate aminotransferase; Provisional

 Score = 47.8 bits (114), Expect = 8e-06
 Identities = 43/188 (22%), Positives = 80/188 (42%), Gaps = 21/188 (11%)

Query: 189 DPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEAT 248
            P  ++L +G   A+  + + ++    D +L P P +  Y  S   H G +  Y + +A 
Sbjct: 81  SPEQVWLANGGDGALDYLARAML-DPGDTVLVPDPGFAYYGMSARYHHGEVREYPVSKAD 139

Query: 249 GWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLA 308
            +      V   L+A   +    R + + +P NPTG  +  +   A+ +   +E LV++ 
Sbjct: 140 DFEQTADTV---LDAYDGE----RIVYLTSPHNPTGSEIPLDEVEALAERTDEETLVVV- 191

Query: 309 DEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGF 368
           DE Y E    P            ++     D++++  ++ SK  YG  G R GY  V   
Sbjct: 192 DEAYGEFAERPSA---------VALVEERDDVAVL--RTFSKA-YGLAGLRLGYAVVPEE 239

Query: 369 SAEVREQI 376
            A+   ++
Sbjct: 240 WADAYARV 247

Length = 357

>gnl|CDD|180542 PRK06358, PRK06358, threonine-phosphate decarboxylase; Provisional

 Score = 45.4 bits (108), Expect = 5e-05
 Identities = 34/125 (27%), Positives = 65/125 (52%), Gaps = 17/125 (13%)

Query: 274 LVVI-NPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRS 332
           LV + NP NPTGQ++++E  + I+D C+K  + L+ DE + + +   E           S
Sbjct: 144 LVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETI---------S 194

Query: 333 M-GYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA---SVNLCSNI 388
           M  Y E   +L+  ++ +K ++   G R GY      +  + E++ ++    S+N  +++
Sbjct: 195 MINYLENFKNLIIIRAFTK-FFAIPGLRLGYG--LTSNKNLAEKLLQMREPWSINTFADL 251

Query: 389 SGQIL 393
           +GQ L
Sbjct: 252 AGQTL 256

Length = 354

>gnl|CDD|226485 COG3977, COG3977, Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 47/184 (25%), Positives = 70/184 (38%), Gaps = 24/184 (13%)

Query: 145 IERAWQIL------DQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDG 198
           ++  +Q L            A   Y   QG   L D +A  +    G+     +I LT+G
Sbjct: 46  MDDYFQDLLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLRREYGWNITAQNIALTNG 105

Query: 199 ASPAVHMMMQLLIRSENDG----ILCPI-PQYPLYSASIALHGGTLVPYY----LDEATG 249
           +  A   +  L     +DG    IL P+ P+Y  Y A   L     V       L  A  
Sbjct: 106 SQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGY-ADAGLEEDLFVSAKPNIELLPA-- 162

Query: 250 WGLETSEVK-KQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLA 308
            G     V  + L   ++ G    A+ V  P NPTG VL +E    +    ++ G+ L+ 
Sbjct: 163 -GQFKYHVDFEHLHIGESTG----AICVSRPTNPTGNVLTDEELAKLDALARQHGIPLII 217

Query: 309 DEVY 312
           D  Y
Sbjct: 218 DNAY 221

Length = 417

>gnl|CDD|236444 PRK09275, PRK09275, aspartate aminotransferase; Provisional

 Score = 42.9 bits (102), Expect = 4e-04
 Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 8/70 (11%)

Query: 245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKE-- 302
           DE   W    SE++K  +       +++AL ++NP NP    +++E+   I D   ++  
Sbjct: 222 DEENEWQYPDSELEKLRDP------SIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRP 275

Query: 303 GLVLLADEVY 312
            L+++ D+VY
Sbjct: 276 DLMIITDDVY 285

Length = 527

>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

 Score = 40.1 bits (94), Expect = 8e-04
 Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 10/123 (8%)

Query: 192 DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQY-PLYSASIALHGGTLVPYYLDEATGW 250
                   + A    +  L+    D ++     +   Y  +  L G   VP  +D+A   
Sbjct: 19  KAVFVPSGTGANEAALLALLGPG-DEVIVDANGHGSRYWVAAELAGAKPVPVPVDDAGYG 77

Query: 251 GLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADE 310
           GL+       LE  KAK     AL+VI P   +G VL     + I    K+ G++LL D 
Sbjct: 78  GLDV----AILEELKAKPNV--ALIVITPNTTSGGVLV--PLKEIRKIAKEYGILLLVDA 129

Query: 311 VYQ 313
              
Sbjct: 130 ASA 132

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170

>gnl|CDD|163513 TIGR03801, asp_4_decarbox, aspartate 4-decarboxylase

 Score = 41.9 bits (99), Expect = 8e-04
 Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 29/155 (18%)

Query: 187 PADPNDIFLTDGASPAV----HMMMQ--LLIRSENDGILCP-------IPQYPLYSASIA 233
           P    D+F  +G + A+      +    LL + +   ++ P       IP+ P Y   + 
Sbjct: 152 PPGEFDLFAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPELPRYDFEV- 210

Query: 234 LHGGTLVPYYLDEATGWGLETSEV-KKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQ 292
                 V    DE T  G  T +   K+LE  K +  +++AL V+NP NP    +++E+ 
Sbjct: 211 ------VRIKADEMTEDGTHTWQYPDKELE--KLRDPSIKALFVVNPSNPPSVAMSDESI 262

Query: 293 RAIVDFCKKE--GLVLLADEVYQENVYVPEKKFHS 325
             IVD    +   L++L D+VY    +V +  F S
Sbjct: 263 EKIVDIVANDRPDLMILTDDVY--GTFVDD--FRS 293

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1) [Energy metabolism, Amino acids and amines]. Length = 521

>gnl|CDD|178597 PLN03026, PLN03026, histidinol-phosphate aminotransferase; Provisional

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 57/258 (22%), Positives = 111/258 (43%), Gaps = 44/258 (17%)

Query: 172 LRDTIAA--GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS 229
           LR  +A   G+E          +I +  GA   + ++M+ ++   +  I CP P + +Y 
Sbjct: 91  LRAALAEDSGLE--------SENILVGCGADELIDLLMRCVLDPGDKIIDCP-PTFGMYV 141

Query: 230 ASIALHGGTL--VPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVL 287
              A++G  +  VP   D    + L+   + + +E  K K      L + +P NP G ++
Sbjct: 142 FDAAVNGAEVIKVPRTPD----FSLDVPRIVEAVETHKPK-----LLFLTSPNNPDGSII 192

Query: 288 AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQS 347
           ++++   I++      LV+L DE Y E           F      M + +K  +L+  ++
Sbjct: 193 SDDDLLKILEL---PILVVL-DEAYIE-----------FSTQESRMKWVKKYDNLIVLRT 237

Query: 348 VSKGYYGECGKRGGYMEVTGFSAEVREQIYKV-ASVNLCSNISGQILASLVMSPPKVGDE 406
            SK   G  G R GY     F   + E +++     N+  +++ ++ A   +S PK  ++
Sbjct: 238 FSKR-AGLAGLRVGY---GAFPLSIIEYLWRAKQPYNV--SVAAEVAACAALSNPKYLED 291

Query: 407 SYESYCAERDGILSSLAR 424
              +   ER+ +   L  
Sbjct: 292 VKNALVEERERLFGLLKE 309

Length = 380

>gnl|CDD|181512 PRK08637, PRK08637, hypothetical protein; Provisional

 Score = 40.7 bits (96), Expect = 0.001
 Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 21/145 (14%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIF--------LTDGASPAVHMMMQLLIRSE 214
           Y+  QGI  LRD     +   +  P+              LT G S    + +      +
Sbjct: 40  YAPPQGIPELRDLWQEKMLREN--PSLSGKKMSLPIVTNALTHGLSLVADLFV-----DQ 92

Query: 215 NDGILCPIPQYPLYSASIAL-HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRA 273
            D +L P   +  Y  +     G  +V Y + +  G G +T  +K+ L+AA  KG   + 
Sbjct: 93  GDTVLLPDHNWGNYKLTFNTRRGAEIVTYPIFDEDG-GFDTDALKEALQAAYNKG---KV 148

Query: 274 LVVIN-PGNPTGQVLAEENQRAIVD 297
           +V++N P NPTG    E+   AIV+
Sbjct: 149 IVILNFPNNPTGYTPTEKEATAIVE 173

Length = 388

>gnl|CDD|240390 PTZ00376, PTZ00376, aspartate aminotransferase; Provisional

 Score = 40.7 bits (96), Expect = 0.001
 Identities = 47/200 (23%), Positives = 72/200 (36%), Gaps = 37/200 (18%)

Query: 202 AVHMMMQLLIRSENDG--ILCPIPQYPLYSASIALHGGTLVPY-YLDEATGWGLETSEVK 258
           A+ +  + L R    G  +    P +P +       G  +  Y Y D  T  GL+   + 
Sbjct: 109 ALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFKSAGLNVKEYRYYDPKTK-GLDFDGML 167

Query: 259 KQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQ----- 313
           + L  A    +    L+     NPTG    EE  + I D  K++ L+   D  YQ     
Sbjct: 168 EDLRTAPNGSVV---LLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASG 224

Query: 314 ---ENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSK--GYYGECGKRGGYMEVTGF 368
              ++ Y   + F             E+ +  +  QS SK  G YGE   R G + +   
Sbjct: 225 DLDKDAYAI-RLF------------AERGVEFLVAQSFSKNMGLYGE---RIGALHIVCA 268

Query: 369 SAEVREQIYKVASVNLCSNI 388
           + E       V S  L   I
Sbjct: 269 NKEEAA---NVLS-QLKLII 284

Length = 404

>gnl|CDD|234972 PRK01688, PRK01688, histidinol-phosphate aminotransferase; Provisional

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 26/134 (19%)

Query: 189 DPNDIFLTDGASPAVHMMMQLLIRS----ENDGIL-CPIPQYPLY--SASIALHGGTLVP 241
            P  + ++ GA   +    +LLIR+      D IL CP P Y +Y  SA         VP
Sbjct: 73  KPEQVLVSRGADEGI----ELLIRAFCEPGKDAILYCP-PTYGMYSVSAETIGVEIRTVP 127

Query: 242 YYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLAEENQRAIVDFCK 300
              +    W L+   +   L+  K        +V + +P NPTG ++  ++ R +++  +
Sbjct: 128 TLDN----WQLDLPAIADNLDGVK--------VVYVCSPNNPTGNLINPQDLRTLLELTR 175

Query: 301 KEGLVLLADEVYQE 314
            + +V +ADE Y E
Sbjct: 176 GKAIV-VADEAYIE 188

Length = 351

>gnl|CDD|134568 PRK01533, PRK01533, histidinol-phosphate aminotransferase; Validated

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 58/231 (25%), Positives = 89/231 (38%), Gaps = 38/231 (16%)

Query: 206 MMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQL---- 261
           M Q+L  S  D ++  I +  L +    +  G   P Y   A   G E  EV        
Sbjct: 81  MEQVLCGSGLDEVIQIISRAVLKAGDNIVTAGATFPQYRHHAIIEGCEVKEVALNNGVYD 140

Query: 262 --EAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK--KEGLVLLADEVYQENVY 317
             E +       + + + NP NPTG  +   N R +  F +   E  +++ DE Y E  Y
Sbjct: 141 LDEISSVVDNDTKIVWICNPNNPTGTYV---NDRKLTQFIEGISENTLIVIDEAYYE--Y 195

Query: 318 VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY 377
           V  K F        ++   EK  +++  ++ SK  YG    R GY      +    E I 
Sbjct: 196 VTAKDF------PETLPLLEKHKNILVLRTFSKA-YGLASFRVGY------AVGHEELIE 242

Query: 378 KVASVNLCSNIS--GQILASLVMSPPKV----------GDESYESYCAERD 416
           K+  V L  N+S   Q  A++     +           G   YES+C E +
Sbjct: 243 KLNVVRLPFNVSSLAQKAATIAFGDDEFIEEIVRVNTEGLRQYESFCKENE 293

Length = 366

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	533
PLN02231	534	alanine transaminase	100.0
PTZ00377	481	alanine aminotransferase; Provisional	100.0
KOG0258	475	consensus Alanine aminotransferase [Amino acid tra	100.0
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	100.0
PLN02368	407	alanine transaminase	100.0
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	100.0
PLN00175	413	aminotransferase family protein; Provisional	100.0
PRK06855	433	aminotransferase; Validated	100.0
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	100.0
PRK07366	388	succinyldiaminopimelate transaminase; Validated	100.0
KOG0257	420	consensus Kynurenine aminotransferase, glutamine t	100.0
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	100.0
PRK08636	403	aspartate aminotransferase; Provisional	100.0
KOG0259	447	consensus Tyrosine aminotransferase [Amino acid tr	100.0
PRK07681	399	aspartate aminotransferase; Provisional	100.0
PLN02187	462	rooty/superroot1	100.0
PRK06207	405	aspartate aminotransferase; Provisional	100.0
PRK06348	384	aspartate aminotransferase; Provisional	100.0
PRK08068	389	transaminase; Reviewed	100.0
PRK08960	387	hypothetical protein; Provisional	100.0
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	100.0
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	100.0
PLN02656	409	tyrosine transaminase	100.0
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	100.0
PRK09148	405	aminotransferase; Validated	100.0
PRK06107	402	aspartate aminotransferase; Provisional	100.0
PRK05942	394	aspartate aminotransferase; Provisional	100.0
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	100.0
PRK09265	404	aminotransferase AlaT; Validated	100.0
PRK07682	378	hypothetical protein; Validated	100.0
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	100.0
PRK07337	388	aminotransferase; Validated	100.0
PRK06108	382	aspartate aminotransferase; Provisional	100.0
PRK07324	373	transaminase; Validated	100.0
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	100.0
PTZ00433	412	tyrosine aminotransferase; Provisional	100.0
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	100.0
PRK08912	387	hypothetical protein; Provisional	100.0
PRK08361	391	aspartate aminotransferase; Provisional	100.0
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	100.0
PRK08363	398	alanine aminotransferase; Validated	100.0
PRK07309	391	aromatic amino acid aminotransferase; Validated	100.0
PRK12414	384	putative aminotransferase; Provisional	100.0
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	100.0
PRK06290	410	aspartate aminotransferase; Provisional	100.0
PRK07683	387	aminotransferase A; Validated	100.0
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	100.0
PRK05957	389	aspartate aminotransferase; Provisional	100.0
PRK05839	374	hypothetical protein; Provisional	100.0
PRK07550	386	hypothetical protein; Provisional	100.0
PRK07568	397	aspartate aminotransferase; Provisional	100.0
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	100.0
PRK07777	387	aminotransferase; Validated	100.0
PRK05764	393	aspartate aminotransferase; Provisional	100.0
PRK09275	527	aspartate aminotransferase; Provisional	100.0
PRK09082	386	methionine aminotransferase; Validated	100.0
PRK08175	395	aminotransferase; Validated	100.0
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	100.0
PTZ00376	404	aspartate aminotransferase; Provisional	100.0
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	100.0
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	100.0
PRK09257	396	aromatic amino acid aminotransferase; Provisional	100.0
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	100.0
PLN02397	423	aspartate transaminase	100.0
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	100.0
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	100.0
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	100.0
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	100.0
PRK06836	394	aspartate aminotransferase; Provisional	100.0
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	100.0
PLN02672	1082	methionine S-methyltransferase	100.0
PRK08637	388	hypothetical protein; Provisional	100.0
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	100.0
PRK06358	354	threonine-phosphate decarboxylase; Provisional	100.0
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	100.0
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	100.0
KOG0256	471	consensus 1-aminocyclopropane-1-carboxylate syntha	100.0
PRK01533	366	histidinol-phosphate aminotransferase; Validated	100.0
PRK08056	356	threonine-phosphate decarboxylase; Provisional	100.0
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	100.0
PRK06225	380	aspartate aminotransferase; Provisional	100.0
PRK07392	360	threonine-phosphate decarboxylase; Validated	100.0
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	100.0
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	100.0
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	100.0
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	100.0
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	100.0
PRK09105	370	putative aminotransferase; Provisional	100.0
KOG1411	427	consensus Aspartate aminotransferase/Glutamic oxal	100.0
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	100.0
PRK07908	349	hypothetical protein; Provisional	100.0
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	100.0
PRK02731	367	histidinol-phosphate aminotransferase; Validated	100.0
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	100.0
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	100.0
PRK06425	332	histidinol-phosphate aminotransferase; Validated	100.0
KOG0634	472	consensus Aromatic amino acid aminotransferase and	100.0
KOG1412	410	consensus Aspartate aminotransferase/Glutamic oxal	100.0
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	100.0
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	100.0
PRK00950	361	histidinol-phosphate aminotransferase; Validated	100.0
PRK03321	352	putative aminotransferase; Provisional	100.0
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	100.0
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	100.0
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	100.0
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	100.0
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	100.0
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	100.0
PRK08354	311	putative aminotransferase; Provisional	100.0
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	100.0
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	100.0
cd00609	350	AAT_like Aspartate aminotransferase family. This f	100.0
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	100.0
PLN02822	481	serine palmitoyltransferase	100.0
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	100.0
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	100.0
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	100.0
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	99.98
KOG0633	375	consensus Histidinol phosphate aminotransferase [A	99.98
PRK02627	396	acetylornithine aminotransferase; Provisional	99.98
PRK01278	389	argD acetylornithine transaminase protein; Provisi	99.98
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	99.97
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	99.97
PRK03244	398	argD acetylornithine aminotransferase; Provisional	99.97
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	99.97
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	99.97
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	99.97
PRK10874	401	cysteine sulfinate desulfinase; Provisional	99.97
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	99.97
PRK10534	333	L-threonine aldolase; Provisional	99.96
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	99.96
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	99.96
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	99.96
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	99.96
PRK13392	410	5-aminolevulinate synthase; Provisional	99.96
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	99.96
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	99.96
PLN02721	353	threonine aldolase	99.96
PRK02936	377	argD acetylornithine aminotransferase; Provisional	99.96
PLN02483	489	serine palmitoyltransferase	99.96
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	99.96
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	99.96
KOG1402	427	consensus Ornithine aminotransferase [Amino acid t	99.96
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	99.96
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	99.96
PRK07179	407	hypothetical protein; Provisional	99.96
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	99.96
PRK07049	427	methionine gamma-lyase; Validated	99.96
PRK08088	425	4-aminobutyrate aminotransferase; Validated	99.95
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	99.95
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	99.95
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	99.95
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	99.95
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	99.95
PLN00144	382	acetylornithine transaminase	99.95
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	99.95
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	99.95
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	99.95
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	99.95
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	99.95
PRK09064	407	5-aminolevulinate synthase; Validated	99.95
PLN02624	474	ornithine-delta-aminotransferase	99.95
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	99.95
PTZ00125	400	ornithine aminotransferase-like protein; Provision	99.95
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	99.95
PRK08247	366	cystathionine gamma-synthase; Reviewed	99.95
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	99.95
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	99.95
PRK02948	381	cysteine desulfurase; Provisional	99.95
PRK13393	406	5-aminolevulinate synthase; Provisional	99.94
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	99.94
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	99.94
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	99.94
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	99.94
PRK04260	375	acetylornithine aminotransferase; Provisional	99.94
PRK09792	421	4-aminobutyrate transaminase; Provisional	99.94
PLN02409	401	serine--glyoxylate aminotransaminase	99.94
PRK04612	408	argD acetylornithine transaminase protein; Provisi	99.94
PLN02242	418	methionine gamma-lyase	99.94
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	99.94
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	99.94
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	99.94
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	99.94
PRK00451	447	glycine dehydrogenase subunit 1; Validated	99.93
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	99.93
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	99.93
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	99.93
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	99.93
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	99.93
PRK06460	376	hypothetical protein; Provisional	99.93
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	99.93
PRK06234	400	methionine gamma-lyase; Provisional	99.93
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	99.93
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	99.93
PRK08045	386	cystathionine gamma-synthase; Provisional	99.93
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	99.92
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.92
PRK13520	371	L-tyrosine decarboxylase; Provisional	99.92
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	99.92
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	99.92
PRK03715	395	argD acetylornithine transaminase protein; Provisi	99.92
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	99.92
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	99.92
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	99.92
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	99.92
PRK06767	386	methionine gamma-lyase; Provisional	99.92
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	99.92
PRK08249	398	cystathionine gamma-synthase; Provisional	99.92
PRK08776	405	cystathionine gamma-synthase; Provisional	99.92
PRK08861	388	cystathionine gamma-synthase; Provisional	99.91
PRK07505	402	hypothetical protein; Provisional	99.91
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	99.91
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	99.91
PRK07582	366	cystathionine gamma-lyase; Validated	99.91
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	99.91
PRK07503	403	methionine gamma-lyase; Provisional	99.91
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	99.91
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	99.91
PLN02760	504	4-aminobutyrate:pyruvate transaminase	99.91
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	99.91
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	99.91
PRK14012	404	cysteine desulfurase; Provisional	99.91
PRK06541	460	hypothetical protein; Provisional	99.91
PRK07482	461	hypothetical protein; Provisional	99.9
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	99.9
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	99.9
PRK07050	394	cystathionine beta-lyase; Provisional	99.9
PRK07811	388	cystathionine gamma-synthase; Provisional	99.9
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	99.9
PRK05965	459	hypothetical protein; Provisional	99.9
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	99.9
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	99.9
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	99.9
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	99.9
PRK06062	451	hypothetical protein; Provisional	99.9
PRK07046	453	aminotransferase; Validated	99.9
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	99.9
PRK06917	447	hypothetical protein; Provisional	99.89
PRK07269	364	cystathionine gamma-synthase; Reviewed	99.89
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	99.89
PRK09028	394	cystathionine beta-lyase; Provisional	99.89
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	99.89
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	99.89
PRK07678	451	aminotransferase; Validated	99.89
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	99.89
PRK05968	389	hypothetical protein; Provisional	99.89
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	99.89
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	99.89
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	99.89
PRK08574	385	cystathionine gamma-synthase; Provisional	99.89
PRK07480	456	putative aminotransferase; Validated	99.89
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	99.88
PRK07483	443	hypothetical protein; Provisional	99.88
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	99.88
PRK07481	449	hypothetical protein; Provisional	99.88
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	99.88
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	99.88
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	99.88
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	99.88
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	99.88
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	99.88
PRK08064	390	cystathionine beta-lyase; Provisional	99.88
PRK06105	460	aminotransferase; Provisional	99.88
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	99.88
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	99.88
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	99.88
PRK07036	466	hypothetical protein; Provisional	99.88
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	99.88
PLN02509	464	cystathionine beta-lyase	99.87
PLN02955	476	8-amino-7-oxononanoate synthase	99.87
PRK05967	395	cystathionine beta-lyase; Provisional	99.87
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	99.87
PLN02651	364	cysteine desulfurase	99.87
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	99.87
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	99.87
PRK12403	460	putative aminotransferase; Provisional	99.86
PRK06148	1013	hypothetical protein; Provisional	99.86
PRK07671	377	cystathionine beta-lyase; Provisional	99.86
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	99.86
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	99.86
PRK04366	481	glycine dehydrogenase subunit 2; Validated	99.86
PRK05939	397	hypothetical protein; Provisional	99.86
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	99.86
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	99.86
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	99.85
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	99.85
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	99.85
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	99.85
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	99.85
KOG1404	442	consensus Alanine-glyoxylate aminotransferase AGT2	99.85
TIGR01814	406	kynureninase kynureninase. This model describes ky	99.84
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	99.84
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	99.84
PRK06149	972	hypothetical protein; Provisional	99.84
PRK08297	443	L-lysine aminotransferase; Provisional	99.83
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	99.83
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	99.82
KOG1401	433	consensus Acetylornithine aminotransferase [Amino	99.82
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	99.82
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	99.81
KOG1549	428	consensus Cysteine desulfurase NFS1 [Amino acid tr	99.8
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	99.79
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	99.79
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	99.79
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	99.79
PRK13580	493	serine hydroxymethyltransferase; Provisional	99.79
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	99.78
PRK08114	395	cystathionine beta-lyase; Provisional	99.78
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	99.78
PRK13034	416	serine hydroxymethyltransferase; Reviewed	99.78
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	99.78
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	99.77
PTZ00094	452	serine hydroxymethyltransferase; Provisional	99.77
PF04864	363	Alliinase_C: Allinase; InterPro: IPR006948 Allicin	99.77
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	99.75
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	99.75
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	99.74
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	99.74
KOG1368	384	consensus Threonine aldolase [Amino acid transport	99.74
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	99.73
PRK06434	384	cystathionine gamma-lyase; Validated	99.73
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	99.73
KOG0053	409	consensus Cystathionine beta-lyases/cystathionine	99.73
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	99.73
PLN02724	805	Molybdenum cofactor sulfurase	99.73
PLN02880	490	tyrosine decarboxylase	99.71
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	99.71
KOG1359	417	consensus Glycine C-acetyltransferase/2-amino-3-ke	99.71
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	99.71
PRK13237	460	tyrosine phenol-lyase; Provisional	99.7
PLN02590	539	probable tyrosine decarboxylase	99.7
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	99.69
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	99.69
PRK02769	380	histidine decarboxylase; Provisional	99.68
PLN03032	374	serine decarboxylase; Provisional	99.68
PRK03080	378	phosphoserine aminotransferase; Provisional	99.67
KOG2862	385	consensus Alanine-glyoxylate aminotransferase AGT1	99.66
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.66
PLN03226	475	serine hydroxymethyltransferase; Provisional	99.64
PRK04311	464	selenocysteine synthase; Provisional	99.64
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	99.62
PLN02271	586	serine hydroxymethyltransferase	99.6
KOG1360	570	consensus 5-aminolevulinate synthase [Coenzyme tra	99.6
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	99.59
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	99.58
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	99.58
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	99.58
PRK15029	755	arginine decarboxylase; Provisional	99.58
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	99.56
KOG1403	452	consensus Predicted alanine-glyoxylate aminotransf	99.55
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	99.54
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	99.53
PLN02263	470	serine decarboxylase	99.51
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	99.51
PRK13578	720	ornithine decarboxylase; Provisional	99.51
PLN02452	365	phosphoserine transaminase	99.49
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	99.49
PRK05367	954	glycine dehydrogenase; Provisional	99.47
PRK15400	714	lysine decarboxylase CadA; Provisional	99.47
PRK12566	954	glycine dehydrogenase; Provisional	99.45
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.44
PRK15399	713	lysine decarboxylase LdcC; Provisional	99.43
PRK12462	364	phosphoserine aminotransferase; Provisional	99.43
KOG1357	519	consensus Serine palmitoyltransferase [Posttransla	99.33
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	99.32
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	99.31
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.27
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	99.26
PRK05367	954	glycine dehydrogenase; Provisional	99.19
PLN02994	153	1-aminocyclopropane-1-carboxylate synthase	99.17
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	99.15
COG3033	471	TnaA Tryptophanase [Amino acid transport and metab	99.05
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	99.02
KOG1358	467	consensus Serine palmitoyltransferase [Posttransla	98.98
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	98.93
KOG1405	484	consensus 4-aminobutyrate aminotransferase [Amino	98.93
COG3844	407	Kynureninase [Amino acid transport and metabolism]	98.93
KOG1383	491	consensus Glutamate decarboxylase/sphingosine phos	98.87
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	98.71
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	98.65
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	98.64
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	98.6
COG4100	416	Cystathionine beta-lyase family protein involved i	98.57
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	98.53
KOG0628	511	consensus Aromatic-L-amino-acid/L-histidine decarb	98.5
COG1932	365	SerC Phosphoserine aminotransferase [Coenzyme meta	98.43
KOG0629	510	consensus Glutamate decarboxylase and related prot	98.42
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	98.39
KOG2467	477	consensus Glycine/serine hydroxymethyltransferase	98.36
KOG3843	432	consensus Predicted serine hydroxymethyltransferas	98.02
PRK12566	954	glycine dehydrogenase; Provisional	97.85
KOG3846	465	consensus L-kynurenine hydrolase [Amino acid trans	97.3
KOG2790	370	consensus Phosphoserine aminotransferase [Coenzyme	96.98
PLN02672	1082	methionine S-methyltransferase	96.91
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	96.18
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	88.9
KOG1465	353	consensus Translation initiation factor 2B, beta s	87.86
COG2102	223	Predicted ATPases of PP-loop superfamily [General	84.7
COG1105	310	FruK Fructose-1-phosphate kinase and related fruct	82.0
PRK08265	261	short chain dehydrogenase; Provisional	81.72

>PLN02231 alanine transaminase

Probab=100.00  E-value=2.1e-75  Score=615.01  Aligned_cols=532  Identities=85%  Similarity=1.312  Sum_probs=446.1

Q ss_pred             CcceecccchhhhhhhhhhcccccCccccccccccc-ccccCCCC-CCCCCCCCCCcccccCcCcccccCccccccchHH
Q 009517            1 MRRFVIGRGRNFLNRSHQQNLLSSSSSHCQSRFLSS-TSVIDSPS-SSSMAPTSSPAITVDSLNPKVLKCEYAVRGEIVS   78 (533)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (533)
                      ||||++|+.+++.+.|+|++--+.| -|.+..+.+. .....+++ .+...+++...++...+|+++.+.+|..+++|..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~vrg~~~~   79 (534)
T PLN02231          1 MRRFLINQAKGLVDHSRRQHHKSPS-FLSPQPRPLASLSRFSSTSEMSASDSTSSLPVTLDTINPKVLKCEYAVRGEIVT   79 (534)
T ss_pred             CchHHHhHHHHHHHHhhhhhhcCCC-CCCCCCCchhHHHhhhhhhhcccccccCCCcCChhhcCHHHHHhhhhccchHHH
Confidence            9999999999999999998332211 1111111110 00000000 0111233456788889999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCC
Q 009517           79 IAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGR  158 (533)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~  158 (533)
                      +|.+++++++.+++.+||++||..+||+|...|++|.+|+|+++..+..|.+++.+..+..||.++++++.+.+....+.
T Consensus        80 ~a~~~~~~~~~~~~~~pf~~~~~~nig~p~~~~~~~~~~~r~v~~~~~~p~~i~~~~~~~~fp~~~i~~a~~~l~~~~~~  159 (534)
T PLN02231         80 IAQRLQEELKTNPGSYPFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSLLDKSETHGLFSADAIERAWQILDQIPGR  159 (534)
T ss_pred             HHHHHHHHHhcCCCcCChhhhhhhccCCHHHcCCCccHHHHHHHHhccCCccCCCCCccccCCHHHHHHHHHHHHhcCCc
Confidence            99999999999999999999999999999999999999999999999999998887678889999999999888764332


Q ss_pred             CccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCe
Q 009517          159 ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGT  238 (533)
Q Consensus       159 ~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~  238 (533)
                      ....|+++.|.++||++||+++.+++|.++++++|++|+|+++++..+++.++..+||.|+++.|+|+.|...+..+|++
T Consensus       160 ~~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~~~~gd~Vli~~P~Y~~y~~~~~~~g~~  239 (534)
T PLN02231        160 ATGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYSASIALHGGT  239 (534)
T ss_pred             cccCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhccCCCCEEEEeCCCChhHHHHHHHcCCE
Confidence            36779999999999999999999999999999999999999999999999997337999999999999999999999999


Q ss_pred             EEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEcccccccccc
Q 009517          239 LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYV  318 (533)
Q Consensus       239 ~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~  318 (533)
                      ++.++++++++|++|+++|+++++..+.++.++++|+++|||||||.++|.+++++|+++|++||++||+||+|.++.|+
T Consensus       240 ~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~  319 (534)
T PLN02231        240 LVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYV  319 (534)
T ss_pred             EEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccC
Confidence            99999998778999999999999876555557899999999999999999999999999999999999999999999996


Q ss_pred             CCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhccccCChHHHHHHHHHc
Q 009517          319 PEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVM  398 (533)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~~L  398 (533)
                      ++.++.++..+..+++..+.+.++|+++||||.++|+||+|+||+++.+.++++++.+.+......+++..+|.++..++
T Consensus       320 ~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~~~~~~~l~~~l~k~~~~~~~s~~~~Q~~~~~~l  399 (534)
T PLN02231        320 PDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFTSDVREQIYKVASVNLCSNISGQILASLVM  399 (534)
T ss_pred             CCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceEEEEEecCCHHHHHHHHHHHhhhcCCChHHHHHHHHHh
Confidence            54466777766543321013457999999999876899999999987444789999998877656788899999999999


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHH
Q 009517          399 SPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRR  478 (533)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (533)
                      +.++.++..|+.+.++.+.+++.|+++++.+.+.|++++|+.+.+|+||||+|+++.+|.+..+..+..+...+..++.+
T Consensus       400 ~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~~~gi~~~~p~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~  479 (534)
T PLN02231        400 SPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNSLEGVTCNKAEGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKR  479 (534)
T ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeeEEeccccCcHHHHHHHhhcCCCcHHHHHHH
Confidence            87765667888888888899999999999999999999899999999999999888777543333333333456677788


Q ss_pred             HHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHHHHHHHhcC
Q 009517          479 LLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKFRN  533 (533)
Q Consensus       479 ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~~~~~~~  533 (533)
                      ++++.||.++||+.|+..++.++||+++..++++|++++++|.+++++++++|+|
T Consensus       480 Ll~~~GV~vvPGs~Fg~~~g~~~~Rit~~~~~e~l~eal~RL~~~~~~~~~~~~~  534 (534)
T PLN02231        480 LLNATGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAIVSRLTEFHKSFMDEFRD  534 (534)
T ss_pred             HHHhcCEEEeCCcccCCCCCCCeEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9989999999999998656667899999988999999999999999999999987

>PTZ00377 alanine aminotransferase; Provisional

Probab=100.00  E-value=4.5e-67  Score=551.90  Aligned_cols=477  Identities=54%  Similarity=0.962  Sum_probs=407.6

Q ss_pred             cccccCcCcccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcc
Q 009517           55 AITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRS  134 (533)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~  134 (533)
                      .++...+++++..++|+++.++..++++++++-+.+++++|+.++|+|++|+|+..|++|.+++|+++...+.|.++..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~vi~~~~G~p~~~~~~~~~~~~~~~~~~~~p~~i~~~   83 (481)
T PTZ00377          4 SFTVEDINPRVVAAEYAVRGLVPARAAEIKEELKTGKGKYPFDSIVYCNIGNPQALGQKPLTFYRQVLSLVEYPFLLEDP   83 (481)
T ss_pred             cCCccccCHHHhhhhhhcCChHHHHHHHHHHHHhcCCccCCcceeEEcCCCChhhcCCCCchHHHHHHHHccChhhhcCc
Confidence            45667889999999999999999999999886666777778888999999999878999999999999999999988887


Q ss_pred             cccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCC
Q 009517          135 ETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSE  214 (533)
Q Consensus       135 ~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~  214 (533)
                      +++..+|..+++++.+.+..... ....|++..|.++||++||+++.+++|+++++++|++|+|+++++..++++++.++
T Consensus        84 ~~~~~~P~~~~~~~~~~~~~~~~-~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~~  162 (481)
T PTZ00377         84 SVSSLFPADVVARAKEYLNAIGG-GTGAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGDP  162 (481)
T ss_pred             cccccCCHHHHHHHHHHHHhCCC-cccCcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhccCC
Confidence            77888999999998776665332 35679999999999999999999989999999999999999999999999986348


Q ss_pred             CCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHH
Q 009517          215 NDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRA  294 (533)
Q Consensus       215 gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~  294 (533)
                      ||+|++++|+|+.|..+++.+|++++.++++++++|++|++.|++++++..+.+.++|+|++++||||||.++|.+++++
T Consensus       163 gD~Vlv~~P~y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~  242 (481)
T PTZ00377        163 SDGVMIPIPQYPLYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEE  242 (481)
T ss_pred             CCEEEECCCCchhHHHHHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHH
Confidence            99999999999999999999999999999998788999999999999875444557999999999999999999999999


Q ss_pred             HHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCC-CceEEEEecCCccCCCCCCCeeEEEEEecCCHHHH
Q 009517          295 IVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEK-DISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVR  373 (533)
Q Consensus       295 i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~  373 (533)
                      |+++|++||++||+||+|.++.|+++.++.++..+..++....+ +.++|+++||||++++|||||+||+++.+.+++++
T Consensus       243 i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~~li  322 (481)
T PTZ00377        243 IIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPEVR  322 (481)
T ss_pred             HHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCCHHHH
Confidence            99999999999999999999999654456676665445421001 24789999999985489999999998533489999


Q ss_pred             HHHHHhhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecc
Q 009517          374 EQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPR  453 (533)
Q Consensus       374 ~~l~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~  453 (533)
                      +++.+.....++++.++|.++..+|+++..++..++.+.++++.+++.|+++++.+.+.|++++|+.+..|+||||+|++
T Consensus       323 ~~l~~~~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g~~~~~p~gg~fl~~~  402 (481)
T PTZ00377        323 EQIYKLASINLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVSCQPVEGAMYAFPR  402 (481)
T ss_pred             HHHHHHhheecCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeecCCeeEEEEee
Confidence            99988776556799999999999998755445567778888888888999999999999999989999999999999988


Q ss_pred             cCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHHHHHHHhc
Q 009517          454 IQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKFR  532 (533)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~~~~~~  532 (533)
                      +++|.+........+..++..++..+|+++||.+.||+.|+...+.++||||++.+++++++++++|++++++++++|.
T Consensus       403 ~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~~Rls~~~~~e~l~~~l~rl~~~~~~~~~~~~  481 (481)
T PTZ00377        403 IELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQKPGTYHFRITILPPEEQIEEMVKKIKEFHESFMKKYG  481 (481)
T ss_pred             ccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence            8766543332222334446667778899999999999999854456699999997778999999999999999999884

>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=6.5e-66  Score=486.98  Aligned_cols=471  Identities=59%  Similarity=0.999  Sum_probs=445.3

Q ss_pred             CCCcccccCcCcccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCC
Q 009517           52 SSPAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSIL  131 (533)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~  131 (533)
                      +.+.++...+|+++.+.+|+.+++|.-+|.+++.+.+.+ ...||+.||+-+||+|+..|++|++|+||++++|.+|.++
T Consensus         4 ~~~~lt~~~~N~~V~k~eYAVRG~i~~rA~El~~eL~~~-~~~PF~eiI~aNIGnpqamgQ~PiTF~RQvlal~~~p~lL   82 (475)
T KOG0258|consen    4 SAKALTLDSLNPNVKKAEYAVRGPIVIRADELEKELKKG-VKKPFDEIIRANIGNPQAMGQKPITFLRQVLALCQYPELL   82 (475)
T ss_pred             cccccchhhcChhhhhhhhhhccchhhhHHHHHHHHHhc-ccCChHHHHhhcCCCHHHhCCCChhHHHHHHHHhcChhhc
Confidence            344667788999999999999999999999999999987 8899999999999999999999999999999999999999


Q ss_pred             CcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhc
Q 009517          132 DRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI  211 (533)
Q Consensus       132 ~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~  211 (533)
                      +.|+    ||.++++++...+....+ +...|..++|++-+|+.+|+++.++.|.+.++++|++|+|++.|+..++..++
T Consensus        83 d~~~----fp~Dai~RA~~~L~~~gG-s~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~  157 (475)
T KOG0258|consen   83 DSPE----FPTDAIKRAKRILNDCGG-SLGAYSDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLI  157 (475)
T ss_pred             CCCC----CCHHHHHHHHHHHHhcCC-cccccccccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHh
Confidence            9865    899999999999998887 78899999999999999999999999988999999999999999999999998


Q ss_pred             cCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHH
Q 009517          212 RSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEEN  291 (533)
Q Consensus       212 ~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~  291 (533)
                      ..+++.|++|-|.|+-|...+..+|+..++|.++++.+|.+|.++|++.+.+++ ++.+++++++.||.||||.+++++.
T Consensus       158 ~~~~~GvliPiPQYPLYsAti~l~~~~~v~YyLdEe~~W~ld~~el~~~~~eA~-k~i~~r~lvvINPGNPTGqvls~e~  236 (475)
T KOG0258|consen  158 AGKKTGVLIPIPQYPLYSATISLLGGTQVPYYLDEESNWSLDVAELERSVDEAR-KGINPRALVVINPGNPTGQVLSEEN  236 (475)
T ss_pred             cCCCCceEeecCCCchhHHHHHHhCCcccceeeccccCCCCCHHHHHHHHHHHh-ccCCceEEEEECCCCccchhhcHHH
Confidence            667799999999999999999999999999999999999999999999999987 7889999999999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCC-CceEEEEecCCccCCCCCCCeeEEEEEecCCH
Q 009517          292 QRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEK-DISLVSFQSVSKGYYGECGKRGGYMEVTGFSA  370 (533)
Q Consensus       292 l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~  370 (533)
                      +++|..+|.+++++++.||+|++.+|.++.+++|+...+.+|++.++ ++.++.++|.||.+.|=+|.|.||+-..+.++
T Consensus       237 ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~p  316 (475)
T KOG0258|consen  237 IEGIICFAAEEGLVLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLNRDP  316 (475)
T ss_pred             HHHHHHHHHHcCeEEechHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeecccCCh
Confidence            99999999999999999999999999988899999999999986666 67889999999999999999999999988899


Q ss_pred             HHHHHHHHhhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEE
Q 009517          371 EVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYL  450 (533)
Q Consensus       371 ~~~~~l~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~  450 (533)
                      ++.+++.++.+...|++..+|.......+.|.+++.+|+.+..+.+.+...++.|...+.+.+++++|+.|.+++|+||+
T Consensus       317 rv~~qi~Kl~si~lc~~V~GQ~~vdl~VnPP~Pgd~Sy~~~~~Ekd~il~~l~~ra~l~~~~~ns~~gi~cn~~qGAMY~  396 (475)
T KOG0258|consen  317 RVKQQIKKLASIKLCPQVSGQKLVDLVVNPPKPGDPSYDLFSSEKDGILSSLRSRAKLTEDAFNSLEGISCNPVQGAMYL  396 (475)
T ss_pred             hHHHHHHHHHhhhhcCCccchhhhceecCCCCCCCcchhhhhhhhHhHHHHHHHHhHHHHHHHhhcCceeeccCccceee
Confidence            99999999988779999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHHHHHHH
Q 009517          451 FPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDK  530 (533)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~~~~  530 (533)
                      |+.+.+|.+.+..++..++..|+.+|.+||+..||+++||++||..+|..|||.++-...  + +.+++++++-.++..+
T Consensus       397 fP~i~lP~kaie~A~~~~~~PD~FYc~~LLe~tGIcvVPGSGFGQ~~GtyH~R~TiLp~~--~-~~i~~~~~fH~~f~~~  473 (475)
T KOG0258|consen  397 FPQISLPPKAIEAAKALGIAPDEFYCLKLLEATGICVVPGSGFGQKEGTYHFRTTILPPG--L-EIIEKFKKFHAEFMDE  473 (475)
T ss_pred             cccccCCHHHHHHHHHhCCCCcHHHHHHHHHhcCeEEecCCCCCCCCceeEEEEeecCch--h-HHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999997444  5 8899999999999988


Q ss_pred             hc
Q 009517          531 FR  532 (533)
Q Consensus       531 ~~  532 (533)
                      |+
T Consensus       474 Y~  475 (475)
T KOG0258|consen  474 YR  475 (475)
T ss_pred             hC
Confidence            75

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=2.9e-63  Score=504.91  Aligned_cols=358  Identities=30%  Similarity=0.541  Sum_probs=319.9

Q ss_pred             eeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHH
Q 009517           99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA  178 (533)
Q Consensus        99 ~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~  178 (533)
                      +|+|++|+|++                      ++       |..+++++.+++.+.    ...|.+..|+++||++||+
T Consensus        30 vi~l~iG~Pd~----------------------~~-------p~~i~~a~~~a~~~~----~~~Y~~~~G~~~LReaia~   76 (393)
T COG0436          30 VIDLSIGEPDF----------------------PT-------PEHIIEAAIEALEEG----GTHYTPSAGIPELREAIAE   76 (393)
T ss_pred             EEEeCCCCCCC----------------------CC-------CHHHHHHHHHHHhcc----cCCCCCCCCCHHHHHHHHH
Confidence            99999999986                      44       789999999988862    2278899999999999999


Q ss_pred             HHHhhcCCCCCCCC-EEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCC-CCCCCCHHH
Q 009517          179 GIEARDGFPADPND-IFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEA-TGWGLETSE  256 (533)
Q Consensus       179 ~~~~~~g~~~~~~~-i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~-~~~~ld~~~  256 (533)
                      ++.+++|.++++++ |++|+|+++|+..++.+++ ++||+|++++|.|+.|...+..+|++++.++++.+ ++|.+|++.
T Consensus        77 ~~~~~~~~~~~~~~eiivt~Ga~~al~~~~~a~~-~pGDeVlip~P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~  155 (393)
T COG0436          77 KYKRRYGLDVDPEEEIIVTAGAKEALFLAFLALL-NPGDEVLIPDPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLED  155 (393)
T ss_pred             HHHHHhCCCCCCCCeEEEeCCHHHHHHHHHHHhc-CCCCEEEEeCCCCcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHH
Confidence            99999999998887 9999999999999999999 89999999999999999999999999999998766 499999999


Q ss_pred             HHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCC
Q 009517          257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG  336 (533)
Q Consensus       257 l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~  336 (533)
                      |++++++      ++|+|+||+||||||.+++++++++|+++|++||++||+||+|.+|.|++. .+.++.++..     
T Consensus       156 l~~~i~~------ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~-~~~s~~~~~~-----  223 (393)
T COG0436         156 LEAAITP------KTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGA-EHPSILELAG-----  223 (393)
T ss_pred             HHhhcCc------cceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCC-CcCCHhhcCC-----
Confidence            9999998      899999999999999999999999999999999999999999999999874 4566555421     


Q ss_pred             CCCceEEEEecCCccCCCCCCCeeEEEEEecCC-HHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHH
Q 009517          337 EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFS-AEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAE  414 (533)
Q Consensus       337 ~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~-~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~  414 (533)
                       ...++|+++||||++ +|+|||+||+++   + +++++.+.++++ .++|++.+.|.++..+|+.++       . ...
T Consensus       224 -~~~~~i~i~s~SK~~-~mtGwRvG~~v~---~~~~l~~~~~~~~~~~~~~~~~~~Q~aa~~aL~~~~-------~-~~~  290 (393)
T COG0436         224 -ARDRTITINSFSKTY-GMTGWRIGWVVG---PPEELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQ-------S-DEV  290 (393)
T ss_pred             -CcceEEEEecccccc-cccccceeEeec---ChHHHHHHHHHHHHhcccCCCHHHHHHHHHHhcCcc-------c-hHH
Confidence             135799999999999 899999999998   6 889999987776 778999999999999998764       1 245


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCceEec-CCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCC
Q 009517          415 RDGILSSLARRAKTLEDAFNSLEGITCNK-AEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGF  493 (533)
Q Consensus       415 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f  493 (533)
                      .+.+++.|++||+.+.+.|.+++|+.+.. |+|+||+|++++..            .++..|+.++|++.||.++||..|
T Consensus       291 ~~~~~~~~~~rrd~l~~~l~~~~g~~~~~~p~Ga~Y~~~~i~~~------------~d~~~f~~~Ll~~~gV~v~PG~~F  358 (393)
T COG0436         291 VEEMREEYRERRDLLVEALNEIGGLSVVKPPEGAFYLFPKIPEL------------LDSEEFAKKLLEEAGVAVVPGSGF  358 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCeeeccCCCeeEEEEeecCCC------------CCHHHHHHHHHHhCCEEEeccccc
Confidence            67777999999999999999998899998 89999999877632            357889999999999999999999


Q ss_pred             CCCCCCceEEEEecCCcCcHHHHHHHHHHHHHHH
Q 009517          494 GQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       494 ~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~  527 (533)
                      |...|.++||||++.+++++++++++|+++++.+
T Consensus       359 g~~~g~~~vRis~~~~~~~l~~a~~rl~~~~~~~  392 (393)
T COG0436         359 GEPPGEGYVRLSLATSEETLEEALRRLARFLAEY  392 (393)
T ss_pred             CCCCCCCeEEEEEecCHHHHHHHHHHHHHHHHhc
Confidence            9545888999999977799999999999988764

>PLN02368 alanine transaminase

Probab=100.00  E-value=2.9e-58  Score=471.43  Aligned_cols=396  Identities=54%  Similarity=0.939  Sum_probs=334.8

Q ss_pred             ccccCcCcccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCccc
Q 009517           56 ITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSE  135 (533)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~  135 (533)
                      ++...+++++..++++.+..+..++.+++++|.+         +|+|++|+|++.|++|.+|.|++++.++.|.....|.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~---------vi~l~iG~Pd~~~~~~~~~~~~~~~~~~~~~~~~~p~   76 (407)
T PLN02368          6 LDYESLNENVKKCQYAVRGELYLRASELQKEGKK---------IIFTNVGNPHALGQKPLTFPRQVVALCQAPFLLDDPN   76 (407)
T ss_pred             CChhhcCHHHHhhhhhcCCHHHHHHHHHHHHhhh---------hhcccCCChhHcCCCCchHHHHHHHHhcCchhcCCcc
Confidence            4555678899999999999999999999999998         9999999999999999999999999999987666543


Q ss_pred             ccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCC
Q 009517          136 TQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN  215 (533)
Q Consensus       136 ~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g  215 (533)
                      ....+|++.++++...+..... ....|++..|.++||+++|+++.+++|.++++++|++|+|+++++..++++++.++|
T Consensus        77 ~~~~~p~~~i~~a~~~l~~~~~-~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~pG  155 (407)
T PLN02368         77 VGLLFPADAIARAKHYLSLTSG-GLGAYSDSRGLPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRGEK  155 (407)
T ss_pred             ccccCCHHHHHHHHHHHhcCCC-CCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcCCCC
Confidence            1124577777777666532212 367899999999999999999999889989999999999999999999998863589


Q ss_pred             CeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHH
Q 009517          216 DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAI  295 (533)
Q Consensus       216 d~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i  295 (533)
                      |+|++++|+|+.|...+..+|++++.++++++++|++|++.+++++++...++.+++++++++||||||.+++.+++++|
T Consensus       156 d~Vli~~P~Y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l  235 (407)
T PLN02368        156 DGVLVPVPQYPLYSATISLLGGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREI  235 (407)
T ss_pred             CEEEEeCCCCccHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHH
Confidence            99999999999999999999999999999887789999999999998643333468999999999999999999999999


Q ss_pred             HHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCC-CCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHH
Q 009517          296 VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG-EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVRE  374 (533)
Q Consensus       296 ~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~  374 (533)
                      +++|++||++||+||+|.++.|++..++.++..+..++... +.+.++|+++||||+|+||||||+||+++.+.++++++
T Consensus       236 ~~~a~~~~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~  315 (407)
T PLN02368        236 LKFCYQERLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVE  315 (407)
T ss_pred             HHHHHHcCCEEEEEccccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHH
Confidence            99999999999999999999997643556766654443110 12458999999999975699999999984223889999


Q ss_pred             HHHHhhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEeccc
Q 009517          375 QIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRI  454 (533)
Q Consensus       375 ~l~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~  454 (533)
                      .+.+.....++++.++|.++.++|+.++.++..++.+.++++.+.+.|++|++++.+.|++++|+.+..|+|+||+|+++
T Consensus       316 ~~~~~~~~~~~~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~~g~~~~~P~Gafy~~~~i  395 (407)
T PLN02368        316 EIYKVASIALSPNVSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSCKNVVCNFTEGAMYSFPQI  395 (407)
T ss_pred             HHHHHhcccCCCCcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEeCCCCeeeEeccCC
Confidence            98887545678899999999999986543444555667777788999999999999999999999999999999999999


Q ss_pred             CCCHHHH
Q 009517          455 QLPEKAI  461 (533)
Q Consensus       455 ~~~~~~~  461 (533)
                      ++|.+.+
T Consensus       396 ~lp~~~~  402 (407)
T PLN02368        396 KLPPKAI  402 (407)
T ss_pred             CCCHHHH
Confidence            9997643

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=100.00  E-value=9.6e-56  Score=469.60  Aligned_cols=394  Identities=28%  Similarity=0.484  Sum_probs=325.3

Q ss_pred             cCcccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCC
Q 009517           61 LNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLF  140 (533)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~  140 (533)
                      +++++..+.++.+.++...+++++..|++         +|+|++|+|+..+.                   ++       
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---------~i~l~~G~p~~~~~-------------------~~-------  163 (517)
T PRK13355        119 KSHKLDNVLYDVRGPVVDEANRMEAAGTH---------ILKLNIGNPAPFGF-------------------RT-------  163 (517)
T ss_pred             hhHHhhccCccHHHHHHHHHHHHHHcCCC---------eEEecCcCCCcCCC-------------------CC-------
Confidence            67888899999998899999999887777         99999999963221                   22       


Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      |+.+++++.+.+..     ...|++..|..+||++||+++.++++..+++++|++|+|+++++.+++++++ ++||+|++
T Consensus       164 p~~~~~~~~~~~~~-----~~~Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal~~~~~~l~-~~Gd~Vli  237 (517)
T PRK13355        164 PDEVVYDMAQQLTD-----TEGYSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELINLSMSALL-DDGDEVLI  237 (517)
T ss_pred             CHHHHHHHHHHhhc-----CCCCCCCcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHHHHHHHHhC-CCCCEEEE
Confidence            78899998887754     3579999999999999999998877667889999999999999999999998 89999999


Q ss_pred             cCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHH
Q 009517          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (533)
Q Consensus       221 ~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~  300 (533)
                      ++|+|+.|...+..+|++++.++++++++|.+|++++++++++      ++++|+++|||||||.+++.+++++|+++|+
T Consensus       238 ~~P~y~~y~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~------~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~  311 (517)
T PRK13355        238 PSPDYPLWTACVNLAGGTAVHYRCDEQSEWYPDIDDIRSKITS------RTKAIVIINPNNPTGALYPREVLQQIVDIAR  311 (517)
T ss_pred             cCCCCcCHHHHHHHCCCEEEEeecCcccCCCCCHHHHHHhcCc------CceEEEEECCCCCCCcCcCHHHHHHHHHHHH
Confidence            9999999999999999999999998877899999999999876      7999999999999999999999999999999


Q ss_pred             HcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHH----HHHHH
Q 009517          301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAE----VREQI  376 (533)
Q Consensus       301 ~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~----~~~~l  376 (533)
                      +||++||+||+|.+|.|++. ++.++..+       .++..+|+++||||++ +++|||+||+++. .+++    +++.+
T Consensus       312 ~~~~~ii~DE~Y~~~~~~~~-~~~s~~~~-------~~~~~vi~~~S~SK~~-~~~G~RiG~~i~~-~~~~~~~~~~~~l  381 (517)
T PRK13355        312 EHQLIIFSDEIYDRLVMDGL-EHTSIASL-------APDLFCVTFSGLSKSH-MIAGYRIGWMILS-GNKRIAKDYIEGL  381 (517)
T ss_pred             HcCcEEEEehhhhhhcCCCC-CcccHHHh-------CCCCeEEEEecchhhc-cCcccceEEEEee-CchhhHHHHHHHH
Confidence            99999999999999998653 45565554       3555688899999999 8999999999862 1444    34444


Q ss_pred             HHhhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCC
Q 009517          377 YKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQL  456 (533)
Q Consensus       377 ~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~  456 (533)
                      ........+.+.++|.++..+|...+    .+..+   +... +++.++++++.+.|++++|+.+..|+|+||+|++++.
T Consensus       382 ~~~~~~~~~~~~~~q~a~~~aL~~~~----~~~~~---~~~~-~~~~~~r~~l~~~L~~~~g~~~~~p~g~fy~~~~l~~  453 (517)
T PRK13355        382 NMLANMRLCSNVPAQSIVQTALGGHQ----SVKDY---LVPG-GRVYEQRELVYNALNAIPGISAVKPKAAFYIFPKIDV  453 (517)
T ss_pred             HHHhcCcCCcChHHHHHHHHHhcCCc----cHHHH---HHHH-HHHHHHHHHHHHHHhcCCCcccCCCCeeeEEEeecCc
Confidence            43344557789999999999996422    22223   3333 3344567899999999989999999999999977652


Q ss_pred             CHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHHHHH
Q 009517          457 PEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFM  528 (533)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~~  528 (533)
                      ..        .+..++..++.++|+++||.++||..|+. .+.++|||+++.++++|++++++|+++++.++
T Consensus       454 ~~--------~~~~~~~~~~~~ll~~~gV~v~pg~~F~~-~~~~~~Ris~~~~~~~l~~a~~rl~~~~~~~~  516 (517)
T PRK13355        454 KK--------FNIHDDEQFALDLLHDKKVLIVQGTGFNW-DKPDHFRVVYLPRLEDLEDAMDRLADFFSYYR  516 (517)
T ss_pred             cc--------CCCCCHHHHHHHHHHhCCEEEeCcchhCC-CCcCEEEEEeCCCHHHHHHHHHHHHHHHHHhh
Confidence            10        01224566777889999999999999973 45569999999888999999999999987653

>PLN00175 aminotransferase family protein; Provisional

Probab=100.00  E-value=2e-53  Score=439.64  Aligned_cols=377  Identities=19%  Similarity=0.329  Sum_probs=314.3

Q ss_pred             cCcccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCC
Q 009517           61 LNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLF  140 (533)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~  140 (533)
                      +++++..++.+.+..+...+.     ..+         +|+|++|.|+.                      +.       
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~-----~~~---------~i~l~~G~P~~----------------------~~-------   68 (413)
T PLN00175         32 VAKRLEKFKTTIFTQMSSLAI-----KHG---------AINLGQGFPNF----------------------DG-------   68 (413)
T ss_pred             hhHHhhcCCCCHHHHHHHHhh-----cCC---------eEecCCCCCCC----------------------CC-------
Confidence            345666666665544444432     123         89999999985                      22       


Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHhccCCCCeEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGIL  219 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vl  219 (533)
                      |+.+.+++.+.+.+    ....|++..|.++||+++++++.+++|++++++ +|++|+|+++|+..++..++ ++||+|+
T Consensus        69 ~~~~~~~~~~~~~~----~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~-~~gd~Vl  143 (413)
T PLN00175         69 PDFVKEAAIQAIRD----GKNQYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAATILGLI-NPGDEVI  143 (413)
T ss_pred             CHHHHHHHHHHHhc----CCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHHHHHHhC-CCCCEEE
Confidence            57777777777765    246899999999999999999999999888887 79999999999999999998 8999999


Q ss_pred             EcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHH
Q 009517          220 CPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC  299 (533)
Q Consensus       220 v~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~  299 (533)
                      +++|+|..|...++..|++++.++++++ +|++|++.|++.+.+      ++++|++++||||||.++|.+++++|+++|
T Consensus       144 v~~P~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~~~~l~~~~~~------~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a  216 (413)
T PLN00175        144 LFAPFYDSYEATLSMAGAKIKTVTLRPP-DFAVPEDELKAAFTS------KTRAILINTPHNPTGKMFTREELELIASLC  216 (413)
T ss_pred             EeCCCchhHHHHHHHcCCEEEEEECCcc-cCCCCHHHHHHhcCc------CceEEEecCCCCCCCcCCCHHHHHHHHHHH
Confidence            9999999999999999999999999865 489999999999876      789999999999999999999999999999


Q ss_pred             HHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHh
Q 009517          300 KKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV  379 (533)
Q Consensus       300 ~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~  379 (533)
                      ++|+++||+||+|.++.|++.  +.++.++. .     ...++|+++||||+| ++||+|+||+++   ++++++.+...
T Consensus       217 ~~~~~~ii~De~Y~~l~~~~~--~~s~~~~~-~-----~~~~vi~i~SfSK~~-~~~G~RiG~~v~---~~~l~~~l~~~  284 (413)
T PLN00175        217 KENDVLAFTDEVYDKLAFEGD--HISMASLP-G-----MYERTVTMNSLGKTF-SLTGWKIGWAIA---PPHLTWGVRQA  284 (413)
T ss_pred             HHcCcEEEEecccCccccCCc--ccChhhCC-C-----CcCcEEEEecchhhc-cCcchheeeeEe---CHHHHHHHHHH
Confidence            999999999999999988642  33443331 1     134689999999999 899999999998   99999999887


Q ss_pred             hh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCH
Q 009517          380 AS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPE  458 (533)
Q Consensus       380 ~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~  458 (533)
                      .. ..++++.+.|.++..+|++++          .++++++++|+++++.+.+.|++. |+.+..|+|+||+|+++... 
T Consensus       285 ~~~~~~~~s~~~Q~a~~~~l~~~~----------~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~p~g~~f~~~~~~~~-  352 (413)
T PLN00175        285 HSFLTFATATPMQWAAVAALRAPE----------SYYEELKRDYSAKKDILVEGLKEV-GFKVYPSSGTYFVMVDHTPF-  352 (413)
T ss_pred             HhhccCCCCHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCeeEEEEEecccc-
Confidence            65 568899999999999996432          456778889999999999999998 89999999999999875311 


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCC--CCCceEEEEecCCcCcHHHHHHHHHHHHH
Q 009517          459 KAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQV--PGTWHFRCTILPQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~--~g~~~iRis~~~~~e~i~~~~~~l~~~l~  525 (533)
                               +..++..++..+++++||.+.||..|+..  .+.++|||+++.++++|++++++|+++++
T Consensus       353 ---------~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~~~~e~l~~~~~rL~~~~~  412 (413)
T PLN00175        353 ---------GFENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFCKDEETLRAAVERMKTKLK  412 (413)
T ss_pred             ---------CCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEcCCHHHHHHHHHHHHHHHh
Confidence                     12235667778888899999999999632  34569999999888999999999998875

>PRK06855 aminotransferase; Validated

Probab=100.00  E-value=5.3e-53  Score=439.21  Aligned_cols=390  Identities=25%  Similarity=0.383  Sum_probs=304.5

Q ss_pred             chHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhc
Q 009517           75 EIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQ  154 (533)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~  154 (533)
                      .+..++++....|++         ++++++|+|+..+.                   .+       |+.+.+++.+.+.+
T Consensus        19 ~~~~~~~~~~~~g~~---------~~~~~~G~p~~~~~-------------------~~-------p~~~~~a~~~~~~~   63 (433)
T PRK06855         19 NIVAVAKKLEKLGVK---------ITWENIGDPIAKGE-------------------KI-------PDWMKEIVAELVMD   63 (433)
T ss_pred             HHHHHHHHHHhcccc---------ccccccCCCcccCC-------------------CC-------CHHHHHHHHHHhhc
Confidence            355566666555555         99999999953211                   21       56666676666544


Q ss_pred             CCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHH-H
Q 009517          155 IPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI-A  233 (533)
Q Consensus       155 ~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~-~  233 (533)
                      .   ....|++..|.++||+++|+++.+++|+.+++++|++|+|+++++..++. ++ ++||.|++++|+|+.|.... .
T Consensus        64 ~---~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~-l~-~~Gd~Vlv~~P~Y~~~~~~~~~  138 (433)
T PRK06855         64 D---KSYGYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAIAKIYG-LL-RREARVIGPSPAYSTHSSAEAA  138 (433)
T ss_pred             C---CCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHHHHHHHHHH-hc-CCCCeEEEeCCCCchHHHHHHH
Confidence            1   35789999999999999999999989999999999999999999999986 66 79999999999999987553 3


Q ss_pred             HhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccc
Q 009517          234 LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQ  313 (533)
Q Consensus       234 ~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~  313 (533)
                      ..|++++.++++++++|++|+++|+++++.    .++++++++++||||||.++|.+++++|+++|++||++||+||+|.
T Consensus       139 ~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~----~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~  214 (433)
T PRK06855        139 HAGYPPVTYRLDPENNWYPDLDDLENKVKY----NPSIAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYN  214 (433)
T ss_pred             hcCCeEEEEecccccCCCCCHHHHHHHHhc----CCCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc
Confidence            458999999998777899999999999874    1257899999999999999999999999999999999999999999


Q ss_pred             cccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEec--CCH---HHHHHHHHhhhccccCCh
Q 009517          314 ENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTG--FSA---EVREQIYKVASVNLCSNI  388 (533)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~--~~~---~~~~~l~~~~~~~~~~~~  388 (533)
                      ++.|++. ++.++..+       .++.++|+++||||++ ++||||+||+++.+  .++   .+++.+........+++.
T Consensus       215 ~l~~~~~-~~~sl~~~-------~~~~~~I~~~S~SK~~-~~pGlRiG~ii~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (433)
T PRK06855        215 NIVYNGK-KTVPLSEV-------IGDVPGIALKGISKEL-PWPGSRCGWIEVYNADKDEVFKKYINSILNAKMIEVCSTT  285 (433)
T ss_pred             ccccCCC-CCCCHHHH-------cCcCCeEEEecCcccc-CCCcceEEEEEEeCCchhhHHHHHHHHHHHhhccccCCCh
Confidence            9998653 44565554       2333579999999999 78999999999731  122   233433333333457789


Q ss_pred             HHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHH---------
Q 009517          389 SGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEK---------  459 (533)
Q Consensus       389 ~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~---------  459 (533)
                      +.|.++..+|+++.        +.++++++++.|+++++.+.+.|++++|+.+..|+||||+|++++....         
T Consensus       286 ~~Q~a~~~~l~~~~--------~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~  357 (433)
T PRK06855        286 LPQMAIPRIMSHPE--------YKNYLKERNKRYEKRSNIAYEKLKDVPGLKVNRTNGAFYMTVVFEDGVLNNKQSLPIE  357 (433)
T ss_pred             HHHHHHHHhhcCCc--------HHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccCCCeeEEEeeccccccccccccCCcc
Confidence            99999999997543        3456678899999999999999998888888999999999977652100         


Q ss_pred             ------HHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec-CCcCcHHHHHHHHHHHHHHH
Q 009517          460 ------AIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       460 ------~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~~~~l~~~l~~~  527 (533)
                            ........+..+++.++..+++++||.+.||+.|+. .+ ++|||+++ .++++|++++++|+++++++
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~~-~~-~~~Rls~~~~~~~~i~~~~~~l~~~~~~~  430 (433)
T PRK06855        358 NPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFCT-EL-NGFRVTLLERDEEKFEWIYQTLAEKIEEY  430 (433)
T ss_pred             hhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCCC-CC-CceEEEECCCcHHHHHHHHHHHHHHHHHH
Confidence                  000000000113567777888999999999999973 33 36999998 68999999999999999864

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=100.00  E-value=7.4e-53  Score=437.04  Aligned_cols=368  Identities=23%  Similarity=0.360  Sum_probs=304.9

Q ss_pred             eeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHH
Q 009517           99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA  178 (533)
Q Consensus        99 ~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~  178 (533)
                      +|+|++|+|+..+..                  .+       |+++.+++.+.+...   ....|++..|.++||+++++
T Consensus        54 ~i~l~~G~P~~~~~~------------------~~-------~~~~~~a~~~al~~~---~~~~Y~~~~G~~~lr~aia~  105 (430)
T PLN00145         54 VLPLGHGDPSAFPCF------------------RT-------APEAEDAVAAALRSG---KYNSYSTCVGLLPARRAIAE  105 (430)
T ss_pred             eeeCCCCCCCCCCCC------------------CC-------CHHHHHHHHHHHHcC---cCCCCCCCccCHHHHHHHHH
Confidence            999999999853211                  21       688888888888652   24579999999999999999


Q ss_pred             HHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHH
Q 009517          179 GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVK  258 (533)
Q Consensus       179 ~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~  258 (533)
                      ++++.+|.++++++|++|+|+++++.++++.+. ++||+|++++|+|+.|...+...|++++.+++.++++|.+|++.++
T Consensus       106 ~~~~~~~~~~~~~~v~it~G~~~al~l~~~~l~-~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~  184 (430)
T PLN00145        106 YLSRDLPYELSTDDIYLTAGCAQAIEIIMSVLA-QPGANILLPRPGYPLYEARAVFSGLEVRHFDLLPERGWEVDLEGVE  184 (430)
T ss_pred             HHhhccCCCCChhhEEEeCCHHHHHHHHHHHhc-CCCCEEEEcCCCCccHHHHHHHcCCEEEEeeCCcccCCcCCHHHHH
Confidence            999888988999999999999999999999998 8999999999999999999999999999999877778999999999


Q ss_pred             HHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCC
Q 009517          259 KQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEK  338 (533)
Q Consensus       259 ~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (533)
                      +.+++      ++++++++|||||||.+++.+++++|+++|+++|++||+||+|.+|.|++ .++.++..+       ..
T Consensus       185 ~~~~~------~~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~-~~~~~~~~~-------~~  250 (430)
T PLN00145        185 ALADE------NTVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGS-KPFVPMGVF-------GE  250 (430)
T ss_pred             HHhCc------CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCC-CCccchhhh-------cc
Confidence            98876      79999999999999999999999999999999999999999999999865 344554443       23


Q ss_pred             CceEEEEecCCccCCCCCCCeeEEEEEecCCHHHH------HHHHHhhhccccCChHHHHHHHHHcCCCCCCChhHHHHH
Q 009517          339 DISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVR------EQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYC  412 (533)
Q Consensus       339 ~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~------~~l~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~  412 (533)
                      ..++|+++||||.| ++||||+||+++.. ++.++      ..+........+++.+.|.++..+|...         ..
T Consensus       251 ~~~vi~~~S~SK~~-~~pG~RlG~iv~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~a~~~~l~~~---------~~  319 (430)
T PLN00145        251 VAPVLTLGSISKRW-VVPGWRLGWIATCD-PNGILKETKVVDSIRNYLNISTDPATFVQGAIPQIIANT---------KE  319 (430)
T ss_pred             cCcEEEEecccccc-CCCCeeEEEEEEec-chhhhhhhHHHHHHHHHhcccCCCCHHHHHHHHHHHhcC---------HH
Confidence            45799999999998 79999999998621 33333      3344443344567889999999988632         12


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCceE-ecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCC
Q 009517          413 AERDGILSSLARRAKTLEDAFNSLEGITC-NKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGS  491 (533)
Q Consensus       413 ~~~~~~~~~~~~~~~~l~~~L~~~~g~~~-~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~  491 (533)
                      ++++++++.++++++.+.+.|++++|+.+ ..|+|+||+|++++...       ..+..++..++.++++++||.+.||.
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~P~ga~y~~v~l~~~~-------~~~~~~~~~~~~~ll~~~gV~v~pG~  392 (430)
T PLN00145        320 EFFTKTLGLLKETADICYEKIKEIKCITCPHKPEGSMFVMVKLDLSC-------LSGIKDDMDFCCKLAKEESVVVLPGS  392 (430)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcCCCeeeEEEeccChhh-------cCCCCCHHHHHHHHHHhCCEEEeCcc
Confidence            45677888999999999999999888886 47999999997765210       00122456778889999999999999


Q ss_pred             CCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHHHHHHH
Q 009517          492 GFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDK  530 (533)
Q Consensus       492 ~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~~~~  530 (533)
                      .|+. +  +||||+++.+++.+++++++|++++.++.+.
T Consensus       393 ~fg~-~--~~lRis~~~~~~~l~~al~rl~~~~~~~~~~  428 (430)
T PLN00145        393 ALGM-K--NWLRITFAIDPPSLEDGLERLKSFCLRHAKL  428 (430)
T ss_pred             ccCC-C--CeEEEEeCCCHHHHHHHHHHHHHHHHHhccc
Confidence            9984 3  3999999988889999999999999887764

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=100.00  E-value=4.4e-53  Score=435.53  Aligned_cols=382  Identities=21%  Similarity=0.308  Sum_probs=305.2

Q ss_pred             cccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCH
Q 009517           63 PKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSA  142 (533)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~  142 (533)
                      +++...+...+..+....+..+..+++         +|+|++|+|.+                      +.       |+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~i~l~~~~~~~----------------------~~-------~~   46 (388)
T PRK07366          5 QRLQPLQSNVFADMDRAKAQARAAGKE---------LIDLSLGSSDL----------------------PA-------PA   46 (388)
T ss_pred             hhhhcCCccHHHHHHHHHHHHHhcCCC---------eEEeCCCCCCC----------------------CC-------CH
Confidence            344445555544455555555655666         99999999874                      22       57


Q ss_pred             HHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHhccCCCCeEEEc
Q 009517          143 DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCP  221 (533)
Q Consensus       143 ~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~  221 (533)
                      .+.+++.+.+...   ....|++..|.++||+++|+++.+.+|+.++++ +|++|+|+++++..+++.++ ++||+|+++
T Consensus        47 ~~~~~~~~~~~~~---~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~al~~~~~~l~-~~gd~Vlv~  122 (388)
T PRK07366         47 HALEAIAQSLHDP---STHGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTAHLPLAVL-NPGDFALLL  122 (388)
T ss_pred             HHHHHHHHHHhCc---ccCCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHHHHHHHHHhC-CCCCEEEEc
Confidence            7787777766532   246799999999999999999999899889998 69999999999999999998 899999999


Q ss_pred             CCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHH
Q 009517          222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK  301 (533)
Q Consensus       222 ~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~  301 (533)
                      +|+|+.|...++..|++++.++++++++|.+|++++++.+.+      ++++|++++||||||.++|.+++++|+++|++
T Consensus       123 ~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~  196 (388)
T PRK07366        123 DPGYPSHAGGVYLAGGQIYPMPLRAENDFLPVFADIPTEVLA------QARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQ  196 (388)
T ss_pred             CCCCcchHHHHHhcCCEEEEEECCCccCCCCCHHHHHHhhcc------cceEEEEeCCCCCCCccCCHHHHHHHHHHHHH
Confidence            999999999999999999999998777788999999888765      68999999999999999999999999999999


Q ss_pred             cCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh
Q 009517          302 EGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS  381 (533)
Q Consensus       302 ~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~  381 (533)
                      ||++||+||+|.++.|++..+..++..+.      ....++|+++||||+| |+||+|+||+++   ++++++.+.+...
T Consensus       197 ~~~~ii~De~Y~~~~~~~~~~~~~~~~~~------~~~~~vi~~~SfSK~~-g~~GlRiG~~v~---~~~li~~l~~~~~  266 (388)
T PRK07366        197 HDLVLVHDFPYVDLVFDGEVEPPSILQAD------PEKSVSIEFFTLSKSY-NMGGFRIGFAIG---NAQLIQALRQVKA  266 (388)
T ss_pred             cCeEEEEecchhhcccCCCCCCCChhhCC------CCcccEEEEeeccccc-CCcchhheehcC---CHHHHHHHHHHHh
Confidence            99999999999999986542234443331      1223589999999999 899999999998   9999999988765


Q ss_pred             -ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHH
Q 009517          382 -VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKA  460 (533)
Q Consensus       382 -~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~  460 (533)
                       ...+..+..+.++.+.+..          ..++++++++.++++++.+.+.|+++ |+.+..|+||+|+|++++...  
T Consensus       267 ~~~~~~~~~~~~~a~~~l~~----------~~~~l~~~~~~~~~~r~~l~~~L~~~-~~~~~~p~~g~f~~~~~~~~~--  333 (388)
T PRK07366        267 VVDFNQYRGILNGAIAALTG----------PQATVQQTVQIFRQRRDAFINALHQI-GWPVPLPEATMYVWAKLPEPW--  333 (388)
T ss_pred             hcccCCCHHHHHHHHHHHhC----------cHHHHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCeeEEEEEECCccc--
Confidence             3344433333344444421          12557788899999999999999998 888888999999997765210  


Q ss_pred             HHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHH
Q 009517          461 IKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l  524 (533)
                              ..++..++..+++++||.+.||+.|+. .+.++|||+++.+.+++++++++|++++
T Consensus       334 --------~~~~~~~~~~l~~~~gv~v~pg~~f~~-~~~~~iRi~~~~~~~~l~~~l~rl~~~l  388 (388)
T PRK07366        334 --------QGNSVEFCTQLVAQTGVAASPGSGFGK-SGEGYVRFALVHDPDILEEAVERIAAFL  388 (388)
T ss_pred             --------CCCHHHHHHHHHHhCCEEEeCchHhCc-CCCCeEEEEecCCHHHHHHHHHHHHHhC
Confidence                    012455666777889999999999973 3445999999977889999999998763

>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]

Probab=100.00  E-value=2.2e-54  Score=416.35  Aligned_cols=389  Identities=22%  Similarity=0.336  Sum_probs=319.0

Q ss_pred             ccccCccccccchHHHHHHHHHHhhcCCCCCCccceee-ccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCH
Q 009517           64 KVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILY-CNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSA  142 (533)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~  142 (533)
                      ++...+++++.++..++.+..              ..+ |++|.|+.                      +.       |.
T Consensus        11 ~l~~~~~~vw~e~~~la~e~~--------------~~~~LgqGfp~~----------------------~~-------P~   47 (420)
T KOG0257|consen   11 NLSTSKPYVWTEINRLAAEHK--------------VPNPLGQGFPDF----------------------PP-------PK   47 (420)
T ss_pred             cccccCCcHHHHHHHHHHhcC--------------CCCcccCCCCCC----------------------CC-------cH
Confidence            455566676666666666654              244 99999996                      33       67


Q ss_pred             HHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHhccCCCCeEEEc
Q 009517          143 DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCP  221 (533)
Q Consensus       143 ~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~  221 (533)
                      -+.+++.+.+...   ..++|.+..|.++|++++++.+...+|....++ +|++|.|+.+++..++..++ ++||+|++.
T Consensus        48 fv~ea~~~~~~~~---~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~-~~GDeVii~  123 (420)
T KOG0257|consen   48 FVTEAAKNAAKEP---STNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLL-NPGDEVIVF  123 (420)
T ss_pred             HHHHHHHHHhccc---hhccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHc-CCCCEEEEe
Confidence            7888888877763   378999999999999999999999888766655 69999999999999999999 899999999


Q ss_pred             CCcCcchHHHHHHhCCeEEEEecC------CCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHH
Q 009517          222 IPQYPLYSASIALHGGTLVPYYLD------EATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAI  295 (533)
Q Consensus       222 ~p~~~~~~~~~~~~g~~~~~v~~~------~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i  295 (533)
                      +|.|..|....+.+|.+++.++..      ...+|.+|++.++.++++      +||+|++|+||||||.++|+++|++|
T Consensus       124 eP~fd~Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~------kTk~Ii~ntPhNPtGkvfsReeLe~i  197 (420)
T KOG0257|consen  124 EPFFDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDWTLDPEELESKITE------KTKAIILNTPHNPTGKVFSREELERI  197 (420)
T ss_pred             cCcchhhhhHHhhcCCcceeeccccccccccCccccCChHHHHhhccC------CccEEEEeCCCCCcCcccCHHHHHHH
Confidence            999999999999999999999998      556899999999999998      89999999999999999999999999


Q ss_pred             HHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHH
Q 009517          296 VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQ  375 (533)
Q Consensus       296 ~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~  375 (533)
                      +++|++||+++|+||+|..+.|++. .+..+..+ ++|     ..++|.++||||+| |++|||+||+++   ++.++..
T Consensus       198 a~l~~k~~~lvisDevYe~~v~d~~-~h~r~asl-Pgm-----~ertitvgS~gKtf-~~TGWrlGW~ig---p~~L~~~  266 (420)
T KOG0257|consen  198 AELCKKHGLLVISDEVYEWLVYDGN-KHIRIASL-PGM-----YERTITVGSFGKTF-GVTGWRLGWAIG---PKHLYSA  266 (420)
T ss_pred             HHHHHHCCEEEEEhhHhHHHhhCCC-cceeeecC-Cch-----hheEEEecccccee-eeeeeeeeeeec---hHHhhhh
Confidence            9999999999999999999999874 45666665 666     23689999999999 899999999998   9999999


Q ss_pred             HHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEec
Q 009517          376 IYKVAS-VNLCSNISGQILASLVMSPPKVGDESYE--SYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFP  452 (533)
Q Consensus       376 l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~  452 (533)
                      +..+++ ..+..++..|.|.++++..+..    ..  .-....+.+.+.|+++|+.|.+.|+++ |++++.|+|++|+|+
T Consensus       267 ~~~vh~~~~~~~~Tp~q~A~a~a~~~~~~----~~~p~~~y~~~~~~~~y~~krdil~k~L~~l-g~~v~~p~gayyl~a  341 (420)
T KOG0257|consen  267 LFPVHQNFVFTCPTPIQEASAAAFALELA----CLQPGGSYFITELVKEYKEKRDILAKALEEL-GLKVTGPEGAYYLWA  341 (420)
T ss_pred             HHHHhhccccccCcHHHHHHHHHHhhhhh----ccCCcchhHHHHHHHHHHHHHHHHHHHHHhc-CCccccCCCceEEEE
Confidence            988876 5566777777777777654321    00  001234568899999999999999999 999999999999999


Q ss_pred             ccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCC----CceEEEEecCCcCcHHHHHHHHH
Q 009517          453 RIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPG----TWHFRCTILPQEDKIPAIVTRLT  521 (533)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g----~~~iRis~~~~~e~i~~~~~~l~  521 (533)
                      +++++............+++..++..++++.|+.+.|++.||..+.    .+++|++++.+++.++.++++++
T Consensus       342 dfs~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~saF~s~~~~~~~~~~~r~~~~k~~~~L~~a~e~l~  414 (420)
T KOG0257|consen  342 DFSLAKSWPFFEEILEKPDDFKFVRWLIKEGGVVVIPPSAFGSREHIKVAERLVRFCFCKADETLRKAIERLK  414 (420)
T ss_pred             eccccccCCcchhhccCCCceeeehhhhccCcEEEeCchhcCCchhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence            9883321100011112235667788999999999999999996432    34788888888888888888887

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=100.00  E-value=2.7e-52  Score=430.74  Aligned_cols=380  Identities=21%  Similarity=0.321  Sum_probs=306.4

Q ss_pred             ccccCccccccchHHHHHHH-HHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCH
Q 009517           64 KVLKCEYAVRGEIVSIAQRL-QQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSA  142 (533)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~  142 (533)
                      ++..++.+++..+...+.+. ...|++         +|+|++|+|++                      +.       |+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~i~l~~~~p~~----------------------~~-------~~   45 (396)
T PRK09147          4 RLDRLQPYPFEKLRALFAGVTPPADLP---------PISLSIGEPKH----------------------PT-------PA   45 (396)
T ss_pred             hhhcCCcchHHHHHHHHHhhhhccCCC---------eEecCCCCCCC----------------------CC-------CH
Confidence            44455555555555555554 222444         99999999875                      21       56


Q ss_pred             HHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCC-CCCC-CEEEcCChHHHHHHHHHHhccCC---CCe
Q 009517          143 DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFP-ADPN-DIFLTDGASPAVHMMMQLLIRSE---NDG  217 (533)
Q Consensus       143 ~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~-~~~~-~i~~t~G~~~al~~~~~~l~~~~---gd~  217 (533)
                      .+.+++.+.+..     ...|++..|.++||+++|+++.+++|++ ++++ +|++|+|+++++..++++++ ++   ||.
T Consensus        46 ~~~~~~~~~~~~-----~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~-~~~~~gd~  119 (396)
T PRK09147         46 FIKDALAANLDG-----LASYPTTAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSREALFAFAQTVI-DRDGPGPL  119 (396)
T ss_pred             HHHHHHHHHhhh-----hcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHHHHHHHHHc-CCCCCCCE
Confidence            677777666543     5679999999999999999999988988 8885 89999999999999999998 78   899


Q ss_pred             EEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHH
Q 009517          218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD  297 (533)
Q Consensus       218 Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~  297 (533)
                      |++++|+|..|..+++..|++++.+|++++++|++|++.+++.+.+      ++++|++++||||||.++|.+++++|++
T Consensus       120 vlv~~P~y~~~~~~~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~------~~k~i~l~nP~NPTG~~~s~~~~~~l~~  193 (396)
T PRK09147        120 VVCPNPFYQIYEGAALLAGAEPYFLNCDPANNFAPDFDAVPAEVWA------RTQLLFVCSPGNPTGAVLPLDDWKKLFA  193 (396)
T ss_pred             EEEcCCCccchHHHHHhcCCEEEEeccCccccCccCHHHHHHHHhh------ccEEEEEcCCCCCcCccCCHHHHHHHHH
Confidence            9999999999999999999999999998777899999999988865      7999999999999999999999999999


Q ss_pred             HHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHH
Q 009517          298 FCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY  377 (533)
Q Consensus       298 l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~  377 (533)
                      +|++|+++||+||+|.++.|++..+..+.......++. +...++|++.||||.+ +++|+|+||+++   ++++++.+.
T Consensus       194 ~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vi~~~S~SK~~-~~~GlRiG~~~~---~~~l~~~~~  268 (396)
T PRK09147        194 LSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGR-DDFKRLVVFHSLSKRS-NVPGLRSGFVAG---DAALLKKFL  268 (396)
T ss_pred             HHHHcCeEEEeeccccccccCCCCCCchhhhhccccCc-cccccEEEEecccccc-CCccceeeeecC---CHHHHHHHH
Confidence            99999999999999999988653222222211111110 1124799999999998 899999999998   999999888


Q ss_pred             Hhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCC
Q 009517          378 KVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQL  456 (533)
Q Consensus       378 ~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~  456 (533)
                      +... ..++++.+.|.++...+..           .+++++.++.++++++.+.+.|++.  +.+..|+||+|+|++++.
T Consensus       269 ~~~~~~~~~~~~~~q~a~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~L~~~--~~~~~p~~g~f~~~~~~~  335 (396)
T PRK09147        269 LYRTYHGCAMPPAVQAASIAAWND-----------EAHVRENRALYREKFDAVTPILAPV--LDVQLPDAGFYLWAKVPG  335 (396)
T ss_pred             HHhhhcccCCCHHHHHHHHHHhcc-----------hhHHHHHHHHHHHHHHHHHHHHHHh--cCCCCCCeeEEEEEECCC
Confidence            7665 4567888899887777642           2346778888999999999999874  567789999999987651


Q ss_pred             CHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCC-----CCCCceEEEEecCCcCcHHHHHHHHHHHHH
Q 009517          457 PEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ-----VPGTWHFRCTILPQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~-----~~g~~~iRis~~~~~e~i~~~~~~l~~~l~  525 (533)
                                    ++..++..+++++||.+.||..|+.     ..+.+++||+++.+++++++++++|+++++
T Consensus       336 --------------~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~~~~~~l~~~l~rl~~~~~  395 (396)
T PRK09147        336 --------------DDTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALVAPLAECVEAAERIVDFCR  395 (396)
T ss_pred             --------------CHHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEecCCHHHHHHHHHHHHHHhc
Confidence                          2455667777789999999999863     233569999999778899999999998764

>PRK08636 aspartate aminotransferase; Provisional

Probab=100.00  E-value=3.9e-52  Score=430.04  Aligned_cols=389  Identities=21%  Similarity=0.331  Sum_probs=313.5

Q ss_pred             cccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHH
Q 009517           65 VLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADS  144 (533)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v  144 (533)
                      +...+..++..+...+.+++..+.+         +++|+.|.|+.                      +.       |..+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~g~p~~----------------------~~-------~~~~   51 (403)
T PRK08636         10 IKRLPKYVFAEVNELKMAARRAGED---------IIDFSMGNPDG----------------------PT-------PQHI   51 (403)
T ss_pred             HHhCCccHHHHHHHHHHHHHhcCCC---------EEEcCCcCCCC----------------------CC-------CHHH
Confidence            4444555566667777777665555         99999999884                      22       5677


Q ss_pred             HHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHhccCCCCeEEEcCC
Q 009517          145 IERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIP  223 (533)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p  223 (533)
                      ++++.+.+...   ....|++..|.++||+++|+++.+++|++++++ +|++|+|+++++..++++++ ++||+|++++|
T Consensus        52 ~~~~~~~~~~~---~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~-~~gd~Vlv~~P  127 (403)
T PRK08636         52 IDKLCESAQKP---KTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQAIT-NPGDVAIVPDP  127 (403)
T ss_pred             HHHHHHHhcCC---ccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHHHHHHHHHhC-CCCCEEEEcCC
Confidence            88877666431   257899999999999999999999889989988 79999999999999999998 89999999999


Q ss_pred             cCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHh-cCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHc
Q 009517          224 QYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKA-KGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKE  302 (533)
Q Consensus       224 ~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~-~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~  302 (533)
                      +|+.|..+++..|+++++++++.+++|++|++.+.+.+++.-+ ..++++++++++||||||.++|.+++++|+++|++|
T Consensus       128 ~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~  207 (403)
T PRK08636        128 AYPIHSQAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKE  207 (403)
T ss_pred             CCcchHHHHHhcCCEEEEEeccccccCccChhhhhhHHHHHHhhccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHc
Confidence            9999999999999999999987555789999876555543321 124789999999999999999999999999999999


Q ss_pred             CCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-
Q 009517          303 GLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-  381 (533)
Q Consensus       303 ~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-  381 (533)
                      +++||+||+|.++.|++. +..++..+ ..     ....+|+++||||+| |+||+|+||+++   ++++++.+.+... 
T Consensus       208 ~~~II~De~Y~~l~~~~~-~~~~~~~~-~~-----~~~~~i~~~S~SK~~-~~~GlRiG~iv~---~~~li~~~~~~~~~  276 (403)
T PRK08636        208 RFYIISDIAYADITFDGY-KTPSILEV-EG-----AKDVAVESYTLSKSY-NMAGWRVGFVVG---NKKLVGALKKIKSW  276 (403)
T ss_pred             CcEEEEeccchhhccCCC-CCCChhcC-CC-----ccccEEEEEeccccc-CCccceeeeeeC---CHHHHHHHHHHHHH
Confidence            999999999999988642 33444433 11     123578899999999 899999999997   9999999888765 


Q ss_pred             ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHH
Q 009517          382 VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAI  461 (533)
Q Consensus       382 ~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~  461 (533)
                      ...+++.+.|.++..+++..          .++++++++.++++++.+.+.|++. |+.+..|+||+|+|++++....  
T Consensus       277 ~~~~~~~~~q~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~g~~~~~~l~~~~~--  343 (403)
T PRK08636        277 LDYGMFTPIQVAATIALDGD----------QSCVEEIRETYRKRRDVLIESFANA-GWELQKPRASMFVWAKIPEPAR--  343 (403)
T ss_pred             hcccCChHHHHHHHHHHhCc----------HHHHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCcceEEEEECCCccC--
Confidence            34677788888887776421          2456778899999999999999997 8888899999999987652100  


Q ss_pred             HHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHHHH
Q 009517          462 KAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       462 ~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~  527 (533)
                             ..++..++..+++++||.+.||..|+. .+.++|||+++.+++++++++++|+++++.+
T Consensus       344 -------~~~~~~l~~~ll~~~gV~v~pg~~f~~-~~~~~iRi~~~~~~~~l~~~~~rl~~~l~~~  401 (403)
T PRK08636        344 -------HLGSLEFSKQLLTEAKVAVSPGIGFGE-YGDEYVRIALIENENRIRQAARNIKKFLKEL  401 (403)
T ss_pred             -------CCCHHHHHHHHHHhCCEEEecchhhCc-CCCCeEEEEecCCHHHHHHHHHHHHHHHHhh
Confidence                   012456666778889999999999973 4456999999988889999999999998763

>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=4.7e-52  Score=392.58  Aligned_cols=369  Identities=24%  Similarity=0.351  Sum_probs=325.7

Q ss_pred             ceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHH
Q 009517           98 EILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA  177 (533)
Q Consensus        98 ~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia  177 (533)
                      .+|.|++|+|..++.-+                  +       .+++.+|+.+.+...   ...+|.|..|....|+++|
T Consensus        62 ~iipl~~GDPsv~~~~~------------------t-------s~~a~~Av~~al~Sg---k~N~Yaps~G~~~AR~AVA  113 (447)
T KOG0259|consen   62 PILPLGHGDPSVYPCFR------------------T-------SQEAEQAVVDALRSG---KGNGYAPSVGILPARRAVA  113 (447)
T ss_pred             eeccCCCCCCCcccccc------------------C-------CHHHHHHHHHHHhcC---CCCCcCCccccHHHHHHHH
Confidence            49999999999755433                  2       588899999988864   3678999999999999999


Q ss_pred             HHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHH
Q 009517          178 AGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEV  257 (533)
Q Consensus       178 ~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l  257 (533)
                      +|+++...-.+++++|++|.|.++|++.++.++. +||..|++|.|+|+-|...+...|.++..|.+-++.+|.+|++.+
T Consensus       114 eYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA-~p~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~v  192 (447)
T KOG0259|consen  114 EYLNRDLPNKLTADDVVLTSGCSQAIELAISSLA-NPGANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGV  192 (447)
T ss_pred             HHhhcCCCCccCcCceEEeccchHHHHHHHHHhc-CCCCceecCCCCCchHHHhhhhcCceeEeecccCcccceechHHH
Confidence            9998877778899999999999999999999998 899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCC
Q 009517          258 KKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE  337 (533)
Q Consensus       258 ~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~  337 (533)
                      |..+.+      +|.+++++||+||+|.++|.+.|++|++.|++++++||.||+|..++|++ .++.++..+       .
T Consensus       193 eal~DE------NT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~-~pfvpmg~f-------s  258 (447)
T KOG0259|consen  193 EALADE------NTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGD-KPFVPMGKF-------S  258 (447)
T ss_pred             HHhhcc------CeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCC-CCccchhhc-------c
Confidence            999988      89999999999999999999999999999999999999999999999955 688888777       4


Q ss_pred             CCceEEEEecCCccCCCCCCCeeEEEEEec-----CCHHHHHHHHHhhhccccCChHHHHHHHHHcCCCCCCChhHHHHH
Q 009517          338 KDISLVSFQSVSKGYYGECGKRGGYMEVTG-----FSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYC  412 (533)
Q Consensus       338 ~~~~vi~i~S~SK~~~gl~G~riG~v~~~~-----~~~~~~~~l~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~  412 (533)
                      ..+.||.++|+||.| -.||||+||++...     .+..+++.+.++.+.+.+++++.|.|+-.+|....         .
T Consensus       259 siVPVitlggisKrW-~VPGWRlGWi~~hD~~gvf~~~~~~q~~~~~~~~~~~p~TiiQ~AlP~IL~kTp---------~  328 (447)
T KOG0259|consen  259 SIVPVITLGGISKRW-IVPGWRLGWIALHDPRGVFRDTKVVQGIKNFLDIIPGPATIIQGALPDILEKTP---------E  328 (447)
T ss_pred             ccCceEeeccccccc-ccCCceeeeEEEecccccccchHHHHHHHHHHhccCCccHhHHHHhHHHHHhCh---------H
Confidence            567899999999999 58999999999843     23455677877777889999999999999986432         2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCce-EecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCC
Q 009517          413 AERDGILSSLARRAKTLEDAFNSLEGIT-CNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGS  491 (533)
Q Consensus       413 ~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~  491 (533)
                      +........++.+.+..++.|+++|++. ..+|+|.||+|+++++..       ...+.++..|+.+|.+|..|.+.||.
T Consensus       329 efF~k~~~~lk~na~l~y~~Lk~IP~l~cp~kPeg~mylmv~l~~s~-------~~~~~dD~dFc~kL~~Eesv~~LPG~  401 (447)
T KOG0259|consen  329 EFFDKKLSFLKSNADLCYSRLKDIPCLTCPVKPEGCMYLMVKLNLSL-------FPDIEDDVDFCQKLAREESVICLPGQ  401 (447)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhcCCCcccCcCCCcceEEEeccchhh-------hccccccHHHHHHHhhhcceEEeccc
Confidence            3456677788999999999999999999 689999999998776331       12367889999999999999999999


Q ss_pred             CCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHHHHHH
Q 009517          492 GFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       492 ~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~~~  529 (533)
                      .|+. ++  |+|++++..++.++++++||+.+..+..+
T Consensus       402 af~~-~n--w~Ri~i~~~~~~leea~~Rik~Fc~RH~~  436 (447)
T KOG0259|consen  402 AFGL-KN--WLRIVITVEEEMLEEAFSRIKEFCDRHSK  436 (447)
T ss_pred             cccC-CC--eEEEEEccChHHHHHHHHHHHHHHHhhhh
Confidence            9995 43  99999999999999999999999998874

>PRK07681 aspartate aminotransferase; Provisional

Probab=100.00  E-value=6.5e-52  Score=428.09  Aligned_cols=377  Identities=19%  Similarity=0.300  Sum_probs=309.5

Q ss_pred             CcccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCC
Q 009517           62 NPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFS  141 (533)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p  141 (533)
                      ++++....++.+..+...+.+.+..+++         +|+|++|.|+.                      ..       |
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~i~l~~g~p~~----------------------~~-------~   47 (399)
T PRK07681          6 ATRMKAFQSSIFSELGAYKKEKIAAGHK---------MIDLSIGNPDM----------------------PP-------A   47 (399)
T ss_pred             hHHHhhcCccHHHHHHHHHHHhhhcCCC---------eEEeCCCCCCC----------------------CC-------C
Confidence            3455555566555555565555554444         99999999874                      21       5


Q ss_pred             HHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCC-CCEEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       142 ~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      +.+.+++.+.+...   ....|+ ..|..+||++||+++++++|+++++ ++|++|+|+++++..++.+++ ++||+|++
T Consensus        48 ~~~~~~~~~~~~~~---~~~~y~-~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~-~~Gd~Vlv  122 (399)
T PRK07681         48 DFVREEMVHTANQK---ESYGYT-LSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVHLPMVYA-NPGDIILV  122 (399)
T ss_pred             HHHHHHHHHHHhcc---ccCCCC-CCCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHHHHHHHhC-CCCCEEEE
Confidence            66777776666532   234565 4799999999999999999999998 899999999999999999998 89999999


Q ss_pred             cCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHH
Q 009517          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (533)
Q Consensus       221 ~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~  300 (533)
                      ++|+|+.|...++..|++++.++++++++|.+|++++++++.+      ++++|++++||||||.++|.+++++|+++|+
T Consensus       123 ~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~  196 (399)
T PRK07681        123 PDPGYTAYETGIQMAGATSYYMPLKKENDFLPDLELIPEEIAD------KAKMMILNFPGNPVPAMAHEDFFKEVIAFAK  196 (399)
T ss_pred             CCCCccchHHHHHhcCCEEEEEecCCCCCCcCCHHHHHHhccc------cceEEEEeCCCCCcCcCCCHHHHHHHHHHHH
Confidence            9999999999999999999999998777899999999998865      7899999999999999999999999999999


Q ss_pred             HcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhh
Q 009517          301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA  380 (533)
Q Consensus       301 ~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~  380 (533)
                      +||++||+||+|.++.|++. +..++.++.      ....++|+++||||.| |+||+|+||+++   ++++++.+....
T Consensus       197 ~~~~~iI~De~y~~~~~~~~-~~~~~~~~~------~~~~~~i~~~S~SK~~-~~~GlRiG~~i~---~~~l~~~~~~~~  265 (399)
T PRK07681        197 KHNIIVVHDFAYAEFYFDGN-KPISFLSVP------GAKEVGVEINSLSKSY-SLAGSRIGYMIG---NEEIVRALTQFK  265 (399)
T ss_pred             HcCeEEEEeccchhheeCCC-CCCChhhCC------CCcccEEEEeeccccc-CCccceeEEEec---CHHHHHHHHHHH
Confidence            99999999999999988653 334443321      1123689999999999 899999999998   999999998876


Q ss_pred             h-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHH
Q 009517          381 S-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEK  459 (533)
Q Consensus       381 ~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~  459 (533)
                      . ..++++.+.|.++..+|.+..          +++++.++.++++++.+.+.|++. |+.+..|+||+|+|++++..  
T Consensus       266 ~~~~~~~s~~~q~~~~~~l~~~~----------~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~p~~g~f~~~~l~~~--  332 (399)
T PRK07681        266 SNTDYGVFLPIQKAACAALRNGA----------AFCEKNRGIYQERRDTLVDGFRTF-GWNVDKPAGSMFVWAEIPKG--  332 (399)
T ss_pred             hhcccCCCHHHHHHHHHHHhCcH----------HHHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCeeeEEEEECCCC--
Confidence            5 567889999999999997532          345667788999999999999998 88888899999999776411  


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHH
Q 009517          460 AIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTD  522 (533)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~  522 (533)
                               + ++..++..+++++||.+.||..|+. .+.++|||+++.+++++++++++|++
T Consensus       333 ---------~-~~~~~~~~l~~~~gv~v~pg~~f~~-~~~~~iRis~~~~~~~~~~~l~~l~~  384 (399)
T PRK07681        333 ---------W-TSLSFAYALMDRANVVVTPGHAFGP-HGEGFVRIALVQDEEVLQQAVENIRN  384 (399)
T ss_pred             ---------C-CHHHHHHHHHHhCCEEEeCChhhCc-CCCCeEEEEecCCHHHHHHHHHHHHH
Confidence                     1 3456677777779999999999973 44459999999778899999999987

>PLN02187 rooty/superroot1

Probab=100.00  E-value=1e-51  Score=431.21  Aligned_cols=371  Identities=21%  Similarity=0.345  Sum_probs=302.5

Q ss_pred             cceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHH
Q 009517           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (533)
Q Consensus        97 ~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~ai  176 (533)
                      .++|+|++|+|+..+..                  .+       |+++.+++.+.+...   ....|++..|.++||+++
T Consensus        66 ~~vi~l~~Gdp~~~p~~------------------~~-------~~~~~~~~~~~~~~~---~~~~Y~~~~G~~~lR~ai  117 (462)
T PLN02187         66 KTILPLGHGDPSVYPCF------------------RT-------CIEAEDAVVDVLRSG---KGNSYGPGAGILPARRAV  117 (462)
T ss_pred             CCeEECCCCCCCCCCCC------------------CC-------CHHHHHHHHHHHhCC---CCCCCCCCCChHHHHHHH
Confidence            34999999999852111                  11       678888888877652   246799999999999999


Q ss_pred             HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHH
Q 009517          177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE  256 (533)
Q Consensus       177 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~  256 (533)
                      |++++++++..+++++|++|+|+++++..++++++ ++||+|++++|+|+.|...+...|++++.+++.++++|++|+++
T Consensus       118 A~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~-~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~l~~~~~~~~d~~~  196 (462)
T PLN02187        118 ADYMNRDLPHKLTPEDIFLTAGCNQGIEIVFESLA-RPNANILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEG  196 (462)
T ss_pred             HHHHHHhcCCCCCcccEEEeCCHHHHHHHHHHHhc-CCCCEEEEeCCCCccHHHHHHHcCCEEEEEeCccccCCccCHHH
Confidence            99999888988999999999999999999999998 89999999999999999999999999999999766789999999


Q ss_pred             HHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCC
Q 009517          257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG  336 (533)
Q Consensus       257 l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~  336 (533)
                      |++++++      ++++++++|||||||.+++.+++++|+++|++||++||+||+|.++.|++. ++.++..+       
T Consensus       197 l~~~~~~------~~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~-~~~s~~~~-------  262 (462)
T PLN02187        197 IEAIADE------NTVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDN-PFVSMGKF-------  262 (462)
T ss_pred             HHHhcCC------CcEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCC-CceeHHHh-------
Confidence            9998866      789999999999999999999999999999999999999999999999653 44455443       


Q ss_pred             CCCceEEEEecCCccCCCCCCCeeEEEEEecCCHH---HHHHHHHhhh---ccccCChHHHHHHHHHcCCCCCCChhHHH
Q 009517          337 EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAE---VREQIYKVAS---VNLCSNISGQILASLVMSPPKVGDESYES  410 (533)
Q Consensus       337 ~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~---~~~~l~~~~~---~~~~~~~~~q~a~~~~L~~~~~~~~~~~~  410 (533)
                      ....++|+++||||+| ++||||+||+++. .++.   +++.+.....   .+.+++.+.|.++..+|++.         
T Consensus       263 ~~~~~vi~l~SfSK~f-~~pGlRiG~~v~~-~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~---------  331 (462)
T PLN02187        263 ASIVPVLTLAGISKGW-VVPGWKIGWIALN-DPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKA---------  331 (462)
T ss_pred             ccCCcEEEEecchhhc-CCccceeEEEEec-CchhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcC---------
Confidence            2334689999999998 8999999999972 1222   3345544443   22356899999999998631         


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCce-EecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEc
Q 009517          411 YCAERDGILSSLARRAKTLEDAFNSLEGIT-CNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVP  489 (533)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~p  489 (533)
                      ..++++++++.++++++.+.+.|++++++. +..|+||+|+|++++.+.       ..++.++..++.++++++||.+.|
T Consensus       332 ~~~~l~~~~~~l~~~r~~l~~~L~~~~~~~~~~~P~gg~fl~~~l~~~~-------~~~~~~~~~~~~~ll~~~gV~v~p  404 (462)
T PLN02187        332 DKNFFAKKNKILKHNVDLVCDRLKDIPCVVCPKKPESCTYLLTKLELSL-------MDNIKDDIDFCVKLAREENLVFLP  404 (462)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCCCCCEeEEEEeecChhh-------CCCCCCHHHHHHHHHhhCCEEEEC
Confidence            125567788899999999999999985554 347899999998764210       011223556677888999999999


Q ss_pred             CCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHHHHHHHh
Q 009517          490 GSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKF  531 (533)
Q Consensus       490 g~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~~~~~  531 (533)
                      |..|+. .  +||||+++.+++++++++++|.++++++.++.
T Consensus       405 G~~fg~-~--~~iRis~~~~~e~l~~al~rL~~~l~~~~~~~  443 (462)
T PLN02187        405 GDALGL-K--NWMRITIGVEAHMLEDALERLKGFCTRHAKKT  443 (462)
T ss_pred             ccccCC-C--CeEEEEeCCCHHHHHHHHHHHHHHHHHhhhcc
Confidence            999973 3  49999999888999999999999999887653

>PRK06207 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1e-51  Score=426.48  Aligned_cols=360  Identities=19%  Similarity=0.308  Sum_probs=299.7

Q ss_pred             ceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHH
Q 009517           98 EILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA  177 (533)
Q Consensus        98 ~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia  177 (533)
                      ++|+|++|+|+.                            ..+|+.+.+++.+.+...   ....|++..|.++||++++
T Consensus        40 ~~i~l~~g~~~~----------------------------~~p~~~~~~~~~~~~~~~---~~~~Y~~~~G~~~LR~aia   88 (405)
T PRK06207         40 RPVDFSHGDVDA----------------------------HEPTPGAFELFSAGVERG---GVQAYTEYRGDADIRELLA   88 (405)
T ss_pred             CceecCCcCCCC----------------------------CCCCHHHHHHHHHHHhcC---CCccCCCCCCCHHHHHHHH
Confidence            489999999873                            111577888887777642   2467999999999999999


Q ss_pred             HHHHhhcCCCCCC-CCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecC---CCCCCCCC
Q 009517          178 AGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLD---EATGWGLE  253 (533)
Q Consensus       178 ~~~~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~---~~~~~~ld  253 (533)
                      +++.+.+|.++++ ++|++|+|+++++..+++.++ ++||+|++++|+|+.|...++..|++++.++++   .+++|++|
T Consensus        89 ~~l~~~~g~~~~~~~~I~it~Ga~~al~~~~~~l~-~~Gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~d  167 (405)
T PRK06207         89 ARLAAFTGAPVDAADELIITPGTQGALFLAVAATV-ARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYLSADKRAGLD  167 (405)
T ss_pred             HHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhc-CCCCEEEEeCCCchhHHHHHHHcCCEEEEEeccccCcccCCCcC
Confidence            9999988988888 899999999999999999998 899999999999999999999999999999986   23468999


Q ss_pred             HHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhc
Q 009517          254 TSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSM  333 (533)
Q Consensus       254 ~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~  333 (533)
                      ++.|++++++      ++++|++++||||||.+++.+++++|+++|++||++||+||+|.++.|++. ++.++..+  . 
T Consensus       168 ~~~l~~~~~~------~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~-~~~~~~~~--~-  237 (405)
T PRK06207        168 LDQLEEAFKA------GVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGT-SYTHLRAL--P-  237 (405)
T ss_pred             HHHHHHhhhh------cCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC-CCCchhcC--C-
Confidence            9999999976      689999999999999999999999999999999999999999999998663 33343332  1 


Q ss_pred             CCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHH
Q 009517          334 GYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYC  412 (533)
Q Consensus       334 ~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~  412 (533)
                         ....++|+++||||+| ++||+|+||+++   ++++++.+..... ...+.+.+.|.++..+|+++.          
T Consensus       238 ---~~~~~vi~i~SfSK~~-~lpGlRiG~ii~---~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~----------  300 (405)
T PRK06207        238 ---IDPENVITIMGPSKTE-SLSGYRLGVAFG---SPAIIDRMEKLQAIVSLRAAGYSQAVLRTWFSEPD----------  300 (405)
T ss_pred             ---CCcCcEEEEecchhhc-cCcccceEEEEc---CHHHHHHHHHHHhHhccCCCHHHHHHHHHHHhCcH----------
Confidence               1123789999999999 899999999998   9999999988765 556778889999999986421          


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCC
Q 009517          413 AERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSG  492 (533)
Q Consensus       413 ~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~  492 (533)
                      .++++..+.++++++.+.+.|++++++.+..|+||+|+|++++..           ..++..++..+++++||.+.||..
T Consensus       301 ~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~gg~fl~~~l~~~-----------~~~~~~~~~~l~~~~gV~v~pG~~  369 (405)
T PRK06207        301 GWMKDRIARHQAIRDDLLRVLRGVEGVFVRAPQAGSYLFPRLPRL-----------AVSLHDFVKILRLQAGVIVTPGTE  369 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeEEEEEeCccc-----------CCCHHHHHHHHHHhcCEEEeCchH
Confidence            223445666778889999999888789999999999999776410           012455666776788999999999


Q ss_pred             CCCCCCCceEEEEecCCcCcHHHHHHHHHHHHHHHH
Q 009517          493 FGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFM  528 (533)
Q Consensus       493 f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~~  528 (533)
                      |+. .+.++|||+++.+.+++++++++|++++++++
T Consensus       370 F~~-~~~~~~Ris~~~~~~~l~~al~rl~~~l~~~~  404 (405)
T PRK06207        370 FSP-HTADSIRLNFSQDHAAAVAAAERIAQLIERYR  404 (405)
T ss_pred             hCC-CCCCeEEEEecCCHHHHHHHHHHHHHHHHHhh
Confidence            973 34569999999888999999999999987754

>PRK06348 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.7e-51  Score=422.89  Aligned_cols=351  Identities=19%  Similarity=0.334  Sum_probs=297.3

Q ss_pred             eeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHH
Q 009517           99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA  178 (533)
Q Consensus        99 ~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~  178 (533)
                      +|+|++|+|+.                      ..       ++.+++++.+.+..    ....|++..|.++||+++|+
T Consensus        31 ~i~l~~g~p~~----------------------~~-------~~~~~~~~~~~~~~----~~~~Y~~~~G~~~lr~~ia~   77 (384)
T PRK06348         31 IIDLSLGDPDL----------------------IT-------DESIINAAFEDAKK----GHTRYTDSGGDVELIEEIIK   77 (384)
T ss_pred             cEEcCCCCCCC----------------------CC-------CHHHHHHHHHHHhc----CCCCCCCCCCcHHHHHHHHH
Confidence            89999999874                      11       56777766665543    35679999999999999999


Q ss_pred             HHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHH
Q 009517          179 GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVK  258 (533)
Q Consensus       179 ~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~  258 (533)
                      ++.+++|..+++++|++|+|+++++..++++++ ++||+|++++|+|.+|...+...|++++.+++.++++|.+|+++++
T Consensus        78 ~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~-~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~  156 (384)
T PRK06348         78 YYSKNYDLSFKRNEIMATVGACHGMYLALQSIL-DPGDEVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQINVKKLE  156 (384)
T ss_pred             HHHHHhCCCCChhhEEEcCChHHHHHHHHHHhc-CCCCEEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCcCCHHHHH
Confidence            999889999999999999999999999999998 8999999999999999999999999999999876668899999999


Q ss_pred             HHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCC
Q 009517          259 KQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEK  338 (533)
Q Consensus       259 ~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (533)
                      +.+++      ++++|++++||||||.++|.+++++|+++|++++++||+||+|.++.|++.  ..++..+. .     .
T Consensus       157 ~~~~~------~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~-~-----~  222 (384)
T PRK06348        157 ALITS------KTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYED--FVPMATLA-G-----M  222 (384)
T ss_pred             HhhCc------CccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCC--ccchhhcC-C-----C
Confidence            98875      789999999999999999999999999999999999999999999988542  33433331 1     1


Q ss_pred             CceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHH
Q 009517          339 DISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDG  417 (533)
Q Consensus       339 ~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~  417 (533)
                      ..++|+++||||++ |+||+|+||+++   ++++++.+..... ..++++.++|.++..+|...          .+++++
T Consensus       223 ~~~vi~~~SfSK~~-~l~GlRiG~~v~---~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~----------~~~~~~  288 (384)
T PRK06348        223 PERTITFGSFSKDF-AMTGWRIGYVIA---PDYIIETAKIINEGICFSAPTISQRAAIYALKHR----------DTIVPL  288 (384)
T ss_pred             cCcEEEEecchhcc-CCccccceeeec---CHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhCc----------HHHHHH
Confidence            23689999999999 899999999998   9999999887765 56788999999999888532          244567


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCC
Q 009517          418 ILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVP  497 (533)
Q Consensus       418 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~  497 (533)
                      +++.++++++.+.+.|++++++.+..|+||||+|++++.+.          + ++..++..+++++||.+.||+.|+. .
T Consensus       289 ~~~~~~~r~~~~~~~L~~~~~~~~~~p~gg~~~~~~~~~~~----------~-~~~~l~~~l~~~~gv~v~pg~~f~~-~  356 (384)
T PRK06348        289 IKEEFQKRLEYAYKRIESIPNLSLHPPKGSIYAFINIKKTG----------L-SSVEFCEKLLKEAHVLVIPGKAFGE-S  356 (384)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCceeccCCeeEEEEEecccCC----------C-CHHHHHHHHHHhCCEEEcCchhhcc-C
Confidence            88889999999999999887888899999999997764211          1 3455666777788999999999973 4


Q ss_pred             CCceEEEEecCCcCcHHHHHHHHHHH
Q 009517          498 GTWHFRCTILPQEDKIPAIVTRLTDF  523 (533)
Q Consensus       498 g~~~iRis~~~~~e~i~~~~~~l~~~  523 (533)
                      +.++|||+++.+++++++++++|+++
T Consensus       357 ~~~~iRi~~~~~~~~l~~al~~l~~~  382 (384)
T PRK06348        357 GEGYIRLACTVGIEVLEEAFNRIEKM  382 (384)
T ss_pred             CCCeEEEEecCCHHHHHHHHHHHHhh
Confidence            45699999998888999999998754

>PRK08068 transaminase; Reviewed

Probab=100.00  E-value=1.8e-51  Score=423.58  Aligned_cols=376  Identities=19%  Similarity=0.252  Sum_probs=303.3

Q ss_pred             ccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHH
Q 009517           64 KVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSAD  143 (533)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~  143 (533)
                      ++....++.+..+..+..+....+++         +|+|+.|+|+.                      +.       |+.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~i~l~~~~p~~----------------------~~-------~~~   49 (389)
T PRK08068          8 LLKQLPKQFFASLVAKVNKKVAEGHD---------VINLGQGNPDQ----------------------PT-------PEH   49 (389)
T ss_pred             HhhhcCccHHHHHHHHHHHHHhcCCC---------eEEecCCCCCC----------------------CC-------CHH
Confidence            44455555555555655555443444         89999999874                      21       466


Q ss_pred             HHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHhccCCCCeEEEcC
Q 009517          144 SIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPI  222 (533)
Q Consensus       144 v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~  222 (533)
                      +.+++.+.+...   ....|+|..|.++||+++|+++.+.+|.+++++ +|++|+|+++++..++..++ ++||+|++++
T Consensus        50 ~~~~~~~~~~~~---~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l~~~~~~~~-~~gd~vlv~~  125 (389)
T PRK08068         50 IVEALQEAAENP---ANHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGLVELPQCLM-NPGDTILVPD  125 (389)
T ss_pred             HHHHHHHHHhCC---CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhC-CCCCEEEEcC
Confidence            777777766542   256799999999999999999998889888888 89999999999999999998 8999999999


Q ss_pred             CcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHc
Q 009517          223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKE  302 (533)
Q Consensus       223 p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~  302 (533)
                      |+|..|...++..|++++.++++++.+|.+|++++++.++.      ++++|++++||||||.++|.+++++|+++|++|
T Consensus       126 P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~------~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~  199 (389)
T PRK08068        126 PGYPDYLSGVALARAQFETMPLIAENNFLPDYTKIPEEVAE------KAKLMYLNYPNNPTGAVATKAFFEETVAFAKKH  199 (389)
T ss_pred             CCCcchHHHHHhcCCEEEEeecccccCCCCCHHHHHHhccc------cceEEEEECCCCCCCCcCCHHHHHHHHHHHHHc
Confidence            99999999999999999999998766889999999998865      689999999999999999999999999999999


Q ss_pred             CCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-
Q 009517          303 GLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-  381 (533)
Q Consensus       303 ~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-  381 (533)
                      +++||+||+|.++.|++. ...++...   .   +.+.++|+++||||+| |+||+|+||+++   ++++++.+.+... 
T Consensus       200 ~~~ii~Deay~~~~~~~~-~~~s~~~~---~---~~~~~~i~~~S~SK~~-g~~GlRiG~~~~---~~~l~~~l~~~~~~  268 (389)
T PRK08068        200 NIGVVHDFAYGAIGFDGQ-KPVSFLQT---P---GAKDVGIELYTLSKTF-NMAGWRVAFAVG---NESVIEAINLLQDH  268 (389)
T ss_pred             CeEEEEehhhhhhccCCC-CCcChhhC---C---CccCCEEEEecchhcc-CCccceeEeEec---CHHHHHHHHHHHhh
Confidence            999999999999888652 22333222   1   1233579999999999 899999999998   9999999987765 


Q ss_pred             ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHH
Q 009517          382 VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAI  461 (533)
Q Consensus       382 ~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~  461 (533)
                      ...+.++..|.++..++.+.          .++++.+++.++++++.+.+.|+++ |+.+.+|+||||+|++++..    
T Consensus       269 ~~~~~~~~~q~~~~~~l~~~----------~~~~~~~~~~~~~~r~~~~~~L~~~-g~~~~~~~g~~~~~v~~~~~----  333 (389)
T PRK08068        269 LFVSLFGAIQDAAIEALLSD----------QSCVAELVARYESRRNAFISACREI-GWEVDAPKGSFFAWMPVPKG----  333 (389)
T ss_pred             ccCCCChHHHHHHHHHHhCc----------HHHHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCeeEEEEEECCCC----
Confidence            33455556777777776432          1456778889999999999999998 88888999999999766421    


Q ss_pred             HHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHH
Q 009517          462 KAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTD  522 (533)
Q Consensus       462 ~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~  522 (533)
                              .+...++..+++++||.+.||..|+ ..+.++|||+++.+++.+.+++++|++
T Consensus       334 --------~~~~~~~~~l~~~~gi~v~pg~~f~-~~~~~~iRi~~~~~~~~l~~al~~l~~  385 (389)
T PRK08068        334 --------YTSEQFADLLLEKAHVAVAPGNGFG-EHGEGYVRVGLLTDEERLREAVERIGK  385 (389)
T ss_pred             --------CCHHHHHHHHHHhCCEEEecchHhC-ccCCCeEEEEEcCCHHHHHHHHHHHHH
Confidence                    1345566677777899999999997 344569999999777778888888765

>PRK08960 hypothetical protein; Provisional

Probab=100.00  E-value=3e-51  Score=421.63  Aligned_cols=378  Identities=22%  Similarity=0.323  Sum_probs=314.6

Q ss_pred             cccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCH
Q 009517           63 PKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSA  142 (533)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~  142 (533)
                      +++..+.++++.++...+.+....+++         +++|+.|.|..                      +.       |+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~i~l~~g~~~~----------------------~~-------~~   48 (387)
T PRK08960          7 RRSRDIEPFHVMALLARANELEAAGHD---------VIHLEIGEPDF----------------------TT-------AE   48 (387)
T ss_pred             hHHHhCCchHHHHHHHHHHHHHhcCCC---------eEEeCCCCCCC----------------------CC-------CH
Confidence            355556677777777777766665555         99999999874                      22       68


Q ss_pred             HHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcC
Q 009517          143 DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI  222 (533)
Q Consensus       143 ~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~  222 (533)
                      .+.+++.+.+..    ....|.+..|.++||+++|+++++++|..+++++|++|+|+++++..++..++ ++||+|++++
T Consensus        49 ~v~~a~~~~~~~----~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~-~~gd~vlv~~  123 (387)
T PRK08960         49 PIVAAGQAALAA----GHTRYTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLLV-DPGKHWLLAD  123 (387)
T ss_pred             HHHHHHHHHHhc----CCCccCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHHHHHHhc-CCCCEEEEcC
Confidence            888888887764    24579999999999999999999988988999999999999999999999998 8999999999


Q ss_pred             CcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHc
Q 009517          223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKE  302 (533)
Q Consensus       223 p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~  302 (533)
                      |+|+.+...+...|.+++.++++.+++|.+|++.+++.+++      +++++++++||||||.++|.+++++|+++|++|
T Consensus       124 p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~  197 (387)
T PRK08960        124 PGYPCNRHFLRLVEGAAQLVPVGPDSRYQLTPALVERHWNA------DTVGALVASPANPTGTLLSRDELAALSQALRAR  197 (387)
T ss_pred             CCCcchHHHHHhcCCeEEEEecCcccCCCCCHHHHHHHhCc------cceEEEEECCCCCCCcCcCHHHHHHHHHHHHHc
Confidence            99999999999999999999998777889999999998876      688999999999999999999999999999999


Q ss_pred             CCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-
Q 009517          303 GLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-  381 (533)
Q Consensus       303 ~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-  381 (533)
                      |+++|+||+|.++.|++.  ..++..    +   +  .++|+++||||.+ |++|+|+||+++   ++++++.+.+... 
T Consensus       198 ~~~li~De~Y~~~~~~~~--~~~~~~----~---~--~~vi~~~S~SK~~-g~~GlRiG~~~~---~~~~~~~~~~~~~~  262 (387)
T PRK08960        198 GGHLVVDEIYHGLTYGVD--AASVLE----V---D--DDAFVLNSFSKYF-GMTGWRLGWLVA---PPAAVPELEKLAQN  262 (387)
T ss_pred             CCEEEEEccccccccCCC--CCChhh----c---c--CCEEEEeeccccc-CCcccEEEEEEc---CHHHHHHHHHHHhh
Confidence            999999999999888542  233322    1   2  2589999999999 899999999998   9999999888765 


Q ss_pred             ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceE-ecCCceeEEecccCCCHHH
Q 009517          382 VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITC-NKAEGAMYLFPRIQLPEKA  460 (533)
Q Consensus       382 ~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~-~~~~gg~~~~~~~~~~~~~  460 (533)
                      .+.+++.+.|.++..+|.+.         ..++++++++.++++++.+.+.|+++ |+.+ ..|.||+|+|++++..   
T Consensus       263 ~~~~~s~~~q~a~~~~l~~~---------~~~~l~~~~~~~~~~~~~l~~~L~~~-~~~~~~~p~g~~f~~~~~~~~---  329 (387)
T PRK08960        263 LYISASTPAQHAALACFEPE---------TLAILEARRAEFARRRDFLLPALREL-GFGIAVEPQGAFYLYADISAF---  329 (387)
T ss_pred             hccCCCHHHHHHHHHHhhcC---------cHHHHHHHHHHHHHHHHHHHHHHHhc-CCcCCcCCCeeEEEEEecccc---
Confidence            56778999999988888531         23556778889999999999999987 7664 5789999999776410   


Q ss_pred             HHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHH
Q 009517          461 IKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~  525 (533)
                              ..++..++..+++++||.+.||+.|+...+.++|||+++.+.+++.+++++|.++++
T Consensus       330 --------~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~~~~~~l~~al~~l~~~~~  386 (387)
T PRK08960        330 --------GGDAFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYTQSLPRLQEAVERIARGLR  386 (387)
T ss_pred             --------CCCHHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEecCCHHHHHHHHHHHHHHHh
Confidence                    013456667778889999999999975334459999999777888888888887764

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=100.00  E-value=3.9e-51  Score=422.70  Aligned_cols=369  Identities=21%  Similarity=0.326  Sum_probs=295.0

Q ss_pred             cceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHH
Q 009517           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (533)
Q Consensus        97 ~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~ai  176 (533)
                      +++|+|++|+|+.++..                  ++       |+.+.+++.+.+...   ....|++..|.++||+++
T Consensus        32 ~~~i~l~~G~p~~~~~~------------------~~-------p~~~~~a~~~~~~~~---~~~~Y~~~~G~~~lr~ai   83 (409)
T PLN00143         32 RLAISFGFGDPSCFECF------------------RT-------TNIAEDAIVEAVRSA---KFNSYAPTGGILPARRAI   83 (409)
T ss_pred             CceeeCCCCCCCCCCCC------------------CC-------CHHHHHHHHHHHhCc---CCCCCCCCCCCHHHHHHH
Confidence            44999999999821111                  22       678888888877652   246699999999999999


Q ss_pred             HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHH
Q 009517          177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE  256 (533)
Q Consensus       177 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~  256 (533)
                      |+++.+++|..+++++|++|+|+++++..++++++ ++||.|++++|+|+.|...+...|++++.+++.++++|.+|+++
T Consensus        84 a~~~~~~~g~~~~~~~I~it~G~~~al~~~~~~l~-~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~  162 (409)
T PLN00143         84 ADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKVLA-RPEANILLPRPGFPDVETYAIFHHLEIRHFDLLPEKGWEVDLDA  162 (409)
T ss_pred             HHHHHhhcCCCCCHhhEEEecChHHHHHHHHHHHc-CCCCEEEEcCCCCcCHHHHHHHcCCEEEEEeccCCCCCcCCHHH
Confidence            99999988988999999999999999999999998 89999999999999999999999999999999766689999999


Q ss_pred             HHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCC
Q 009517          257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG  336 (533)
Q Consensus       257 l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~  336 (533)
                      |+++++.      ++++++++|||||||.+++.+++++|+++|++|+++||+||+|.++.|++. ++.++..+       
T Consensus       163 l~~~~~~------~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~-~~~~~~~~-------  228 (409)
T PLN00143        163 VEAIADE------NTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSK-PFVPMGLF-------  228 (409)
T ss_pred             HHHhccc------CCEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCC-CCcchhhh-------
Confidence            9998865      789999999999999999999999999999999999999999999998653 33343332       


Q ss_pred             CCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHH------HHHHHHhhhccccCChHHHHHHHHHcCCCCCCChhHHH
Q 009517          337 EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEV------REQIYKVASVNLCSNISGQILASLVMSPPKVGDESYES  410 (533)
Q Consensus       337 ~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~------~~~l~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~  410 (533)
                      .+..++|+++||||.| ++||+|+||+++.+ ++.+      ++.+.+.......++.+.|.++..+|.+.         
T Consensus       229 ~~~~~vi~~~SfSK~f-~~pGlRvG~~v~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~---------  297 (409)
T PLN00143        229 ASIVPVITLGSISKRW-MIPGWGLGWLVTCD-PSGLLQICEIADSIKKALNPAPFPPTFIQAAIPEILEKT---------  297 (409)
T ss_pred             cccCcEEEEccchhhc-CCCccceEEEEeeC-chhhhhhHHHHHHHHHHHhccCCCCchHHHHHHHHHhcC---------
Confidence            2334689999999998 89999999998721 2333      33343333333345788999999888532         


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCceE-ecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEc
Q 009517          411 YCAERDGILSSLARRAKTLEDAFNSLEGITC-NKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVP  489 (533)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~-~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~p  489 (533)
                      ...++++.++.++++++.+.+.|+++++..+ ..|+||+|+|++++.  ..     ..++.++..++.++++++||.+.|
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~p~gg~f~w~~l~~--~~-----~~~~~~~~~~~~~ll~~~gV~v~p  370 (409)
T PLN00143        298 TEDFFSKTINILRAALAFCYDKLKEIPCIMCPQKAEGAFFALVKLNL--LL-----LEDIEDDMEFCLKLAKEESLIILP  370 (409)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCeeEEEEEecch--hh-----cCCCCCHHHHHHHHHHhCCEEEeC
Confidence            1234566777888888899999988755443 478999999977641  00     001223556667888899999999


Q ss_pred             CCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHHHHHH
Q 009517          490 GSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       490 g~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~~~  529 (533)
                      |..|+. .  ++|||+++.+++++++++++|+++++++.+
T Consensus       371 g~~f~~-~--~~iRi~~~~~~~~l~~al~rl~~~l~~~~~  407 (409)
T PLN00143        371 GVTVGL-K--NWLRITFAVEQSSLEDGLGRLKSFCGRHAK  407 (409)
T ss_pred             ccccCC-C--CeEEEEEcCCHHHHHHHHHHHHHHHHHhcc
Confidence            999973 3  399999998889999999999999987654

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=100.00  E-value=3.9e-51  Score=421.60  Aligned_cols=378  Identities=18%  Similarity=0.324  Sum_probs=304.7

Q ss_pred             ccccCccccccchHHHHHHHH-HHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCH
Q 009517           64 KVLKCEYAVRGEIVSIAQRLQ-QELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSA  142 (533)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~  142 (533)
                      ++...+.+++..+...+.+.. ..+++         +++|++|+|+.                      ..       |+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~i~l~~~~p~~----------------------~~-------~~   44 (393)
T TIGR03538         3 NLSRLQPYPFEKLAALLAGVTPPASKP---------PIALSIGEPKH----------------------PT-------PA   44 (393)
T ss_pred             hhhhCCccHHHHHHHHHHhhhhhcCCC---------eEEecCCCCCC----------------------CC-------CH
Confidence            344555556666666665553 23445         99999999885                      22       57


Q ss_pred             HHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCC--CCCC-CEEEcCChHHHHHHHHHHhccCCCCe--
Q 009517          143 DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFP--ADPN-DIFLTDGASPAVHMMMQLLIRSENDG--  217 (533)
Q Consensus       143 ~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~--~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~--  217 (533)
                      .+.+++.+.+..     ...|++..|.++||+++|+++.+++|++  ++++ +|++|+|+++++..++++++ ++||+  
T Consensus        45 ~~~~a~~~~~~~-----~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~al~~~~~~l~-~~gd~~~  118 (393)
T TIGR03538        45 FVLEALRENLHG-----LSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFAFAQAVI-NPGQAPL  118 (393)
T ss_pred             HHHHHHHHHhhc-----cCCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHHHHHHHHHHHc-CCCCcce
Confidence            777777776543     5679999999999999999999988876  6775 79999999999999999998 89986  


Q ss_pred             EEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHH
Q 009517          218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD  297 (533)
Q Consensus       218 Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~  297 (533)
                      |++++|+|..|...+...|++++.++++++++|.+|++++++++.+      ++++|++++||||||.+++.+++++|++
T Consensus       119 vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~k~i~l~~p~NPtG~~~s~~~~~~l~~  192 (393)
T TIGR03538       119 VVMPNPFYQIYEGAALLAGAEPYFLNCTAENGFLPDFDAVPESVWR------RCQLLFVCSPGNPTGAVLSLDTLKKLIE  192 (393)
T ss_pred             EEecCCCCcchHHHHHhcCCeEEEeeccccCCCCCCHHHHHHHHhh------cceEEEEeCCCCCcCcccCHHHHHHHHH
Confidence            9999999999999999999999999998777899999999998876      7899999999999999999999999999


Q ss_pred             HHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHH
Q 009517          298 FCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY  377 (533)
Q Consensus       298 l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~  377 (533)
                      +|++||++||+||+|.++.|++..+..+.......+.. +...++|+++||||.+ +++|+|+||+++   ++++++.+.
T Consensus       193 ~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vi~i~S~SK~~-~~~GlRvG~~i~---~~~l~~~~~  267 (393)
T TIGR03538       193 LADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGR-DDFRRCLVFHSLSKRS-NLPGLRSGFVAG---DAEILKAFL  267 (393)
T ss_pred             HHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccc-cccccEEEEecchhhc-CCcccceEEEec---CHHHHHHHH
Confidence            99999999999999999888643233333222222210 1234689999999998 789999999998   999999888


Q ss_pred             Hhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCC
Q 009517          378 KVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQL  456 (533)
Q Consensus       378 ~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~  456 (533)
                      +... ..++.+.+.|.++...+..           .+++++.++.++++++.+.+.|++.  +.+..|+||+|+|++++.
T Consensus       268 ~~~~~~~~~~~~~~q~~~~~~l~~-----------~~~~~~~~~~~~~~~~~~~~~L~~~--~~~~~p~gg~f~~~~~~~  334 (393)
T TIGR03538       268 RYRTYHGCAMPIPTQLASIAAWND-----------EQHVRENRALYREKFAAVLEILGQV--LDLELPDAGFYLWPKVPG  334 (393)
T ss_pred             HHHHhhccCcCHHHHHHHHHHhcC-----------hHHHHHHHHHHHHHHHHHHHHHHhh--CcccCCCeeEEEEEECCC
Confidence            7765 4567888999988777742           2446778888999999999999875  456789999999977641


Q ss_pred             CHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCC-----CCCCceEEEEecCCcCcHHHHHHHHHHH
Q 009517          457 PEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ-----VPGTWHFRCTILPQEDKIPAIVTRLTDF  523 (533)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~-----~~g~~~iRis~~~~~e~i~~~~~~l~~~  523 (533)
                                    ++..++..+++++||.+.||+.|+.     ..+.++|||+++.+++++++++++|+++
T Consensus       335 --------------~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~~~~~~~l~~~l~~l~~~  392 (393)
T TIGR03538       335 --------------DDEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIALVAPLEECVEAAERIRSF  392 (393)
T ss_pred             --------------CHHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEecCCHHHHHHHHHHHHHh
Confidence                          2345666777889999999999863     2345699999987889999999999875

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PLN02656 tyrosine transaminase

Probab=100.00  E-value=7.4e-51  Score=420.89  Aligned_cols=368  Identities=21%  Similarity=0.329  Sum_probs=302.5

Q ss_pred             eeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHH
Q 009517           99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA  178 (533)
Q Consensus        99 ~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~  178 (533)
                      +|+|++|+|+.....                  ++       |+.+.+++.+.+...   ....|++..|..+||+++++
T Consensus        33 ~i~l~~G~p~~~~~~------------------~~-------~~~~~~~~~~~~~~~---~~~~Y~~~~G~~~lr~~ia~   84 (409)
T PLN02656         33 VISLGMGDPTAYSCF------------------HT-------THVAQEAVVDALQSN---KFNGYAPTVGLPQARRAIAE   84 (409)
T ss_pred             eeecCCCCCCcCCCC------------------CC-------CHHHHHHHHHHHhcC---CCCCCCCCCCCHHHHHHHHH
Confidence            999999999831100                  21       678888888777652   25689999999999999999


Q ss_pred             HHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHH
Q 009517          179 GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVK  258 (533)
Q Consensus       179 ~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~  258 (533)
                      ++++.+|..+++++|++|+|+++++..++.+++ ++||+|++++|+|+.|...+...|++++.++++++++|.+|++.++
T Consensus        85 ~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~  163 (409)
T PLN02656         85 YLSRDLPYKLSLDDVFITSGCTQAIDVALSMLA-RPGANILLPRPGFPIYELCAAFRHLEVRYVDLLPEKGWEVDLDAVE  163 (409)
T ss_pred             HHHHhcCCCCCcccEEEeCChHHHHHHHHHHHh-CCCCeEEEeCCCCCcHHHHHHHcCCEEEEEeCCCcCCCCCCHHHHH
Confidence            999988988999999999999999999999998 8999999999999999999999999999999976668899999999


Q ss_pred             HHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCC
Q 009517          259 KQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEK  338 (533)
Q Consensus       259 ~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (533)
                      +++++      ++++|++++||||||.+++.+++++|+++|++|+++||+||+|.+|.|++. ++.++..+       +.
T Consensus       164 ~~~~~------~~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~~-------~~  229 (409)
T PLN02656        164 ALADQ------NTVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSN-PFVPMGVF-------GS  229 (409)
T ss_pred             HHhcc------CceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCC-CcccHHHh-------cc
Confidence            98876      789999999999999999999999999999999999999999999998653 33444333       23


Q ss_pred             CceEEEEecCCccCCCCCCCeeEEEEEecC-----CHHHHHHHHHhhhccccCChHHHHHHHHHcCCCCCCChhHHHHHH
Q 009517          339 DISLVSFQSVSKGYYGECGKRGGYMEVTGF-----SAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCA  413 (533)
Q Consensus       339 ~~~vi~i~S~SK~~~gl~G~riG~v~~~~~-----~~~~~~~l~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~  413 (533)
                      ..++|+++||||+| ++||+|+||+++.+.     ++++++.+.+......+++.+.|.++..+|++..         ..
T Consensus       230 ~~~vi~~~SfSK~f-~~pGlRiG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~---------~~  299 (409)
T PLN02656        230 IVPVLTLGSLSKRW-IVPGWRLGWFVTTDPSGSFRDPKIVERIKKYFDILGGPATFIQAAVPTILEQTD---------ES  299 (409)
T ss_pred             cCcEEEEcccchhc-cCcceeEEEEEEeCcccccccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhcCc---------HH
Confidence            44689999999998 789999999997210     2578888877655445678999999999986421         24


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCce-EecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCC
Q 009517          414 ERDGILSSLARRAKTLEDAFNSLEGIT-CNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSG  492 (533)
Q Consensus       414 ~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~  492 (533)
                      ++++.+++++++++.+.+.|++++++. +..|+||||+|++++.+.       ..+..++..++.++++++||.+.||+.
T Consensus       300 ~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~~p~gg~~~w~~l~~~~-------~~~~~~~~~~~~~~l~~~gV~v~pg~~  372 (409)
T PLN02656        300 FFKKTINILKQSSDICCDRIKEIPCITCPHKPEGSMAVMVKLNLSL-------LEDISDDIDFCFKLAREESVIILPGTA  372 (409)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCCcCCcCCCeEEEEEEecchhh-------cCCCCCHHHHHHHHHHhCCEEEecchh
Confidence            467778889999999999999885554 368999999998764210       001123445666888899999999999


Q ss_pred             CCCCCCCceEEEEecCCcCcHHHHHHHHHHHHHHHHH
Q 009517          493 FGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       493 f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~~~  529 (533)
                      |+. .  ++|||+++.+++++++++++|++++.+..+
T Consensus       373 fg~-~--~~iRi~~~~~~e~l~eal~rl~~~~~~~~~  406 (409)
T PLN02656        373 VGL-K--NWLRITFAADPSSLEEALGRIKSFYLRHSK  406 (409)
T ss_pred             cCC-C--CeEEEEeCCCHHHHHHHHHHHHHHHHHhcc
Confidence            973 3  399999998889999999999999887654

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=100.00  E-value=5.6e-51  Score=419.64  Aligned_cols=377  Identities=22%  Similarity=0.338  Sum_probs=308.7

Q ss_pred             cccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCH
Q 009517           63 PKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSA  142 (533)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~  142 (533)
                      +++....+++...+...++++...+++         +++|+.|+|+.                      ..       |+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~i~l~~~~~~~----------------------~~-------~~   47 (385)
T PRK09276          6 DRIKNLPPYLFAEIDKKKAEKIARGVD---------VISLGIGDPDL----------------------PT-------PD   47 (385)
T ss_pred             hHhhhCCccHHHHHHHHHHHHHhcCCC---------EEEecCCCCCC----------------------CC-------CH
Confidence            345555566555666666666666666         99999999874                      22       56


Q ss_pred             HHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHhccCCCCeEEEc
Q 009517          143 DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCP  221 (533)
Q Consensus       143 ~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~  221 (533)
                      .+.+++.+.+...   ....|++..|.++||+++++++++.+|.+++++ +|++|+|+++++..+++.++ ++||+|+++
T Consensus        48 ~~~~~~~~~~~~~---~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i~~~~~~~~-~~gd~Vl~~  123 (385)
T PRK09276         48 HIIEAMCKAVEDP---ENHQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGIAHIPLAFV-NPGDVVLVP  123 (385)
T ss_pred             HHHHHHHHHHhCC---CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhC-CCCCEEEEc
Confidence            7777777776542   246799999999999999999998889888887 59999999999999999998 899999999


Q ss_pred             CCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHH
Q 009517          222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK  301 (533)
Q Consensus       222 ~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~  301 (533)
                      +|+|+.|...++..|.+++.++++.+.+|.+|++++++.+..      ++++|++++||||||.+++.+++++|+++|++
T Consensus       124 ~P~y~~~~~~~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~~~------~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~  197 (385)
T PRK09276        124 DPGYPVYKIGTIFAGGEPYFMPLKEENGFLPDLDAIPEDVAK------KAKLMFINYPNNPTGAVADLEFFEEVVDFAKK  197 (385)
T ss_pred             CCCCcChHHHHHHcCCEEEEEecCCCCCCcCCHHHHHHhccc------cceEEEEeCCCCCCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999998766788999999988865      78999999999999999999999999999999


Q ss_pred             cCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh
Q 009517          302 EGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS  381 (533)
Q Consensus       302 ~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~  381 (533)
                      ||++||+||+|.++.|++. ...++..+.      ....++|+++||||.| |++|+|+||+++   ++++++.+.+...
T Consensus       198 ~~~~ii~De~y~~~~~~~~-~~~~~~~~~------~~~~~~i~~~S~SK~~-g~~GlRiG~~i~---~~~l~~~~~~~~~  266 (385)
T PRK09276        198 YDIIVCHDAAYSEIAYDGY-KPPSFLEVP------GAKDVGIEFHSLSKTY-NMTGWRIGFAVG---NADLIAGLGKVKS  266 (385)
T ss_pred             CCcEEEEecchhheecCCC-CCCChhccC------CCcCCEEEEecchhhc-CCcchhheeeeC---CHHHHHHHHHHHh
Confidence            9999999999999888643 234433321      1123579999999999 899999999998   9999999988765


Q ss_pred             -ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHH
Q 009517          382 -VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKA  460 (533)
Q Consensus       382 -~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~  460 (533)
                       ...+.+.+.|.++..+|.+.          ..++++++++++++++.+.+.|+++ |+.+..|+||+|+|++++..   
T Consensus       267 ~~~~~~~~~~q~~~~~~l~~~----------~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~v~~~~~---  332 (385)
T PRK09276        267 NVDSGVFQAIQEAGIAALNGP----------QEVVEELRKIYQERRDILVEGLRKL-GLEVEPPKATFYVWAPVPKG---  332 (385)
T ss_pred             hccCCCCHHHHHHHHHHHcCc----------HHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEECCCC---
Confidence             44567778888888888531          2456778889999999999999998 88888999999999776411   


Q ss_pred             HHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHH
Q 009517          461 IKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTD  522 (533)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~  522 (533)
                               .+...++.++++++||.+.||..|+. .+.++|||+++.+++++.+++++|.+
T Consensus       333 ---------~~~~~l~~~ll~~~gi~v~~g~~f~~-~~~~~~Ris~~~~~~~l~~~l~~l~~  384 (385)
T PRK09276        333 ---------YTSAEFATLLLDKAGVVVTPGNGFGE-YGEGYFRIALTVPDERIEEAVERIKK  384 (385)
T ss_pred             ---------CCHHHHHHHHHHhCCEEECCchhhCC-CCCCeEEEEeCCCHHHHHHHHHHHhh
Confidence                     13455667777788999999999973 44569999999777888888888764

>PRK09148 aminotransferase; Validated

Probab=100.00  E-value=7.7e-51  Score=420.24  Aligned_cols=387  Identities=21%  Similarity=0.314  Sum_probs=309.2

Q ss_pred             ccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHH
Q 009517           64 KVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSAD  143 (533)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~  143 (533)
                      ++..+..+++..+...+.+....|++         +|+|+.|+|+.                      +.       |+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~i~l~~~~p~~----------------------~~-------~~~   47 (405)
T PRK09148          6 RIRRLPPYVFEQVNRLKAAARAAGAD---------IIDLGMGNPDL----------------------PT-------PQH   47 (405)
T ss_pred             hhhcCCccHHHHHHHHHHHHHhcCCC---------eEEcCCCCCCC----------------------CC-------CHH
Confidence            34445555555555555555554555         89999999874                      21       577


Q ss_pred             HHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHhccCCCCeEEEcC
Q 009517          144 SIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPI  222 (533)
Q Consensus       144 v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~  222 (533)
                      +++++.+.+...   ....|++..|.++||+++|+++++++|.+++++ +|++|+|+++++..++..++ ++||+|++++
T Consensus        48 ~~~~~~~~~~~~---~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~-~~gd~Vl~~~  123 (405)
T PRK09148         48 IVDKLCETAQDP---RTHRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFANMAQAIT-APGDVILCPN  123 (405)
T ss_pred             HHHHHHHHHcCc---ccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHhc-CCCCEEEEcC
Confidence            788877666431   357899999999999999999998889888887 89999999999999999998 8999999999


Q ss_pred             CcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHc
Q 009517          223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKE  302 (533)
Q Consensus       223 p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~  302 (533)
                      |+|+.|...+...|++++.++++.+++|-.+   +++.++..   .+++++|++++||||||.++|.+++++|+++|++|
T Consensus       124 P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~---l~~~~~~~---~~~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~  197 (405)
T PRK09148        124 PSYPIHAFGFIMAGGVIRSVPAEPDEEFFPA---LERAVRHS---IPKPIALIVNYPSNPTAYVADLDFYKDVVAFAKKH  197 (405)
T ss_pred             CCCcccHHHHHhcCCEEEEEeCCCCCCCccC---HHHHHhhc---cccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHc
Confidence            9999999999999999999999876555444   44444321   12789999999999999999999999999999999


Q ss_pred             CCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-
Q 009517          303 GLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-  381 (533)
Q Consensus       303 ~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-  381 (533)
                      +++||+||+|.++.|++. +..++..+ ..     ....+|+++||||.+ |+||+|+||+++   ++++++.+.+... 
T Consensus       198 ~~~ii~De~Y~~~~~~~~-~~~s~~~~-~~-----~~~~~i~~~SfSK~~-~~pGlR~G~~v~---~~~~i~~l~~~~~~  266 (405)
T PRK09148        198 DIIILSDLAYSEIYFDGN-PPPSVLQV-PG-----AKDVTVEFTSMSKTF-SMAGWRMGFAVG---NERLIAALTRVKSY  266 (405)
T ss_pred             CeEEEEeccchhhhcCCC-CCCChhhC-CC-----ccCcEEEEecccccc-CCcchheeeeeC---CHHHHHHHHHHHHH
Confidence            999999999999988542 34444332 11     123578899999999 899999999998   9999999988775 


Q ss_pred             ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHH
Q 009517          382 VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAI  461 (533)
Q Consensus       382 ~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~  461 (533)
                      ..++++.+.|.++..+|++++          ++++++++.++++++.+.+.|+++ |+.+..|+||+|+|++++....  
T Consensus       267 ~~~~~~~~~q~~~~~~L~~~~----------~~~~~~~~~~~~~r~~l~~~L~~~-~~~~~~p~~g~f~~~~l~~~~~--  333 (405)
T PRK09148        267 LDYGAFTPIQVAATAALNGPQ----------DCIAEMRELYKKRRDVLVESFGRA-GWDIPPPAASMFAWAPIPEAFR--  333 (405)
T ss_pred             hccCCChHHHHHHHHHHhCcH----------HHHHHHHHHHHHHHHHHHHHHHHc-CCccCCCCeeEEEEEECCCccC--
Confidence            467788999999999986422          456778889999999999999987 8888889999999977642100  


Q ss_pred             HHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHHHHHHH
Q 009517          462 KAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDK  530 (533)
Q Consensus       462 ~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~~~~  530 (533)
                             ..++..++..+++++||.+.||..|+ ..+.++|||+++.+.+.+.+++++|.++++++.+.
T Consensus       334 -------~~~~~~~~~~ll~~~gV~v~pg~~f~-~~~~~~~Ri~~~~~~~~l~~al~~l~~~l~~~~~~  394 (405)
T PRK09148        334 -------HLGSLEFSKLLVEKADVAVAPGVGFG-EHGDGYVRIALVENEQRIRQAARNIKRFLSSADET  394 (405)
T ss_pred             -------CCCHHHHHHHHHHhCCEEEeCchhhC-CCCCCeEEEEecCCHHHHHHHHHHHHHHHHHHHHH
Confidence                   01245666777878999999999997 33455999999988889999999999999887654

>PRK06107 aspartate aminotransferase; Provisional

Probab=100.00  E-value=5.5e-51  Score=421.38  Aligned_cols=390  Identities=21%  Similarity=0.339  Sum_probs=317.7

Q ss_pred             cccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCH
Q 009517           63 PKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSA  142 (533)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~  142 (533)
                      +++....+.....+...+++....+.+         +++|+.|.|..                      +.       |+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~i~l~~g~p~~----------------------~~-------~~   49 (402)
T PRK06107          8 ARVSRIKPSPSTAAAARARELRAAGRS---------IVDLTVGEPDF----------------------DT-------PD   49 (402)
T ss_pred             HHhhhcCccHHHHHHHHHHHHHhccCC---------EEEcCCCCCCC----------------------CC-------CH
Confidence            344444444444455556666544444         99999999884                      21       56


Q ss_pred             HHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcC
Q 009517          143 DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI  222 (533)
Q Consensus       143 ~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~  222 (533)
                      .+.+++.+.+..    ....|++..|.++||+++++++.+.+|..+++++|++|+|+++|+..++..++ ++||+|++++
T Consensus        50 ~~~~~~~~~~~~----~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~~~-~~gd~vl~~~  124 (402)
T PRK06107         50 HIKQAAVAAIER----GETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALMATL-EAGDEVIIPA  124 (402)
T ss_pred             HHHHHHHHHHHc----CCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhc-CCCCEEEEec
Confidence            777777777764    25679999999999999999999888988899999999999999999999887 8999999999


Q ss_pred             CcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHc
Q 009517          223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKE  302 (533)
Q Consensus       223 p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~  302 (533)
                      |+|..|...+...+..++.++++.+++|.+|++.+++++++      ++++|++++|+||||.++|.+++++|+++|+++
T Consensus       125 p~y~~y~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~  198 (402)
T PRK06107        125 PYWVSYPDMVLANDGTPVIVACPEEQGFKLTPEALEAAITP------RTRWLILNAPSNPTGAVYSRAELRALADVLLRH  198 (402)
T ss_pred             CCCcCHHHHHHHcCCEEEEecCCcccCCCCCHHHHHhhcCc------CceEEEEECCCCCCCcCcCHHHHHHHHHHHHHc
Confidence            99999999999999999999887666788999999998865      789999999999999999999999999999998


Q ss_pred             -CCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh
Q 009517          303 -GLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS  381 (533)
Q Consensus       303 -~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~  381 (533)
                       ++++|+||+|.++.|++. +..++..+..++     ..++|+++||||.| |+||+|+||+++   ++++++.+.....
T Consensus       199 ~~~~iI~De~y~~l~~~~~-~~~~~~~~~~~~-----~~~vi~~~S~SK~~-~~pGlRiG~~~~---~~~~~~~~~~~~~  268 (402)
T PRK06107        199 PHVLVLTDDIYDHIRFDDE-PTPHLLAAAPEL-----RDRVLVTNGVSKTY-AMTGWRIGYAAG---PADLIAAINKLQS  268 (402)
T ss_pred             CCeEEEEehhccccccCCC-CCCCHHHhCcCc-----cCCEEEEeccchhh-cCcccceeeeec---CHHHHHHHHHHHH
Confidence             999999999999988653 445555442221     23689999999999 899999999998   9999999988876


Q ss_pred             -ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHH
Q 009517          382 -VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKA  460 (533)
Q Consensus       382 -~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~  460 (533)
                       ...+++.+.|.++..+|....          .+++..++.|+++++.+.+.|++++|+.+.+|+||||+|++++.-   
T Consensus       269 ~~~~~~s~~~q~~~~~~l~~~~----------~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~p~gg~~~~~~~~~~---  335 (402)
T PRK06107        269 QSSSCPSSISQAAAAAALNGDQ----------SFVTESVAVYKQRRDYALALLNAIPGLSCLVPDGAFYLYVNCAGL---  335 (402)
T ss_pred             hcccCCChHHHHHHHHHhcCCh----------HHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcceEEeeecccc---
Confidence             567899999999999996422          346778888999999999999988789999999999999876310   


Q ss_pred             HHHHHhcC--CCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHHHH
Q 009517          461 IKAAEAEK--TVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       461 ~~~~~~~~--~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~  527 (533)
                      .+.....+  ..++..++..+++++||.+.||..|+. .+  +|||+++.+++++++++++|+++++++
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~-~~--~iRis~~~~~e~l~~~l~~l~~~l~~~  401 (402)
T PRK06107        336 IGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGL-SP--YFRLSIATSLETLEEACARIERAVAAL  401 (402)
T ss_pred             cccccccccCCCCHHHHHHHHHHhCCEEEeCccccCC-CC--eEEEEeCCCHHHHHHHHHHHHHHHHhc
Confidence            00000001  124556777888889999999999984 33  999999988999999999999988764

>PRK05942 aspartate aminotransferase; Provisional

Probab=100.00  E-value=7.2e-51  Score=419.57  Aligned_cols=376  Identities=20%  Similarity=0.308  Sum_probs=304.1

Q ss_pred             ccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHH
Q 009517           64 KVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSAD  143 (533)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~  143 (533)
                      ++..+.++....+...+...+..|++         +|+|+.|+|..                      +.       |..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~g~~---------~i~l~~g~p~~----------------------~~-------p~~   52 (394)
T PRK05942         11 RLQALPPYVFARLDELKARAREQGLD---------LIDLGMGNPDG----------------------AA-------PQP   52 (394)
T ss_pred             hhccCCCcHHHHHHHHHHHHHhcCCC---------eEEcCCCCCCC----------------------CC-------CHH
Confidence            44444444444445555555555555         99999999874                      11       577


Q ss_pred             HHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHhccCCCCeEEEcC
Q 009517          144 SIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPI  222 (533)
Q Consensus       144 v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~  222 (533)
                      +++++.+.+...   ....|++..|.++||+++|+++++++|.+++++ +|++|+|+++++..++..++ ++||+|++++
T Consensus        53 ~~~~~~~~~~~~---~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al~~~~~~~~-~~gd~Vlv~~  128 (394)
T PRK05942         53 VIEAAIAALADP---QNHGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGLTHLALAYV-NPGDVVLVPS  128 (394)
T ss_pred             HHHHHHHHHhCC---CCccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHHHHHHHHhC-CCCCEEEEcC
Confidence            888877766531   256899999999999999999998889888888 48999999999999999998 8999999999


Q ss_pred             CcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHc
Q 009517          223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKE  302 (533)
Q Consensus       223 p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~  302 (533)
                      |+|+.+...+...|++++.++++.+++|.+|++++++.+.+      ++++|++++||||||.++|.+++++|+++|+++
T Consensus       129 P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~  202 (394)
T PRK05942        129 PAYPAHFRGPLIAGAQIYPIILKPENDWLIDLSSIPEEVAQ------QAKILYFNYPSNPTTATAPREFFEEIVAFARKY  202 (394)
T ss_pred             CCCcchHHHHHHcCCEEEEeecCCccCCccCHHHHHHhccc------cceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHc
Confidence            99999999999999999999998777889999999998876      799999999999999999999999999999999


Q ss_pred             CCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-
Q 009517          303 GLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-  381 (533)
Q Consensus       303 ~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-  381 (533)
                      |++||+||+|.++.|++. ...++..+ ..     ....+|+++||||.| |++|+|+||+++   ++++++.+..... 
T Consensus       203 ~~~iI~De~y~~~~~~~~-~~~~~~~~-~~-----~~~~~i~~~SfSK~~-~~~GlRiG~i~~---~~~l~~~l~~~~~~  271 (394)
T PRK05942        203 EIMLVHDLCYAELAFDGY-QPTSLLEI-PG-----AKDIGVEFHTLSKTY-NMAGWRVGFVVG---NRHIIQGLRTLKTN  271 (394)
T ss_pred             CeEEEEeccchhhccCCC-CCCChhhC-CC-----ccccEEEEecchhcc-CChhhheeeeec---CHHHHHHHHHHHhh
Confidence            999999999999988653 23343332 11     122578899999999 899999999998   9999999987765 


Q ss_pred             ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHH
Q 009517          382 VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAI  461 (533)
Q Consensus       382 ~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~  461 (533)
                      ..++.+.+.|.++..+|+..          .+++++++++++++++.+.+.|++. |+.+..|+||+|+|++++..    
T Consensus       272 ~~~~~~~~~q~~~~~~l~~~----------~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~f~~~~~~~~----  336 (394)
T PRK05942        272 LDYGIFSALQKAAETALQLP----------DSYLQQVQERYRTRRDFLIQGLGEL-GWNIPPTKATMYLWVPCPVG----  336 (394)
T ss_pred             cccCCCHHHHHHHHHHHhCc----------HHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCeeeEEEEECCCC----
Confidence            45778888999998888531          2456778889999999999999988 88888999999999776521    


Q ss_pred             HHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHH
Q 009517          462 KAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTD  522 (533)
Q Consensus       462 ~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~  522 (533)
                             . ++..++.++++++||.+.||..|+ ..+.++|||+++.+.+.+.+++++|.+
T Consensus       337 -------~-~~~~~~~~~l~~~gV~v~~g~~f~-~~~~~~iRis~~~~~~~l~~~l~~l~~  388 (394)
T PRK05942        337 -------M-GSTDFALNVLQKTGVVVTPGNAFG-EGGEGYVRISLIADCDRLGEALDRLKQ  388 (394)
T ss_pred             -------C-CHHHHHHHHHHHCCEEEeCChhhC-cCCCCeEEEEecCCHHHHHHHHHHHHH
Confidence                   1 234556678888999999999997 344569999998655666666666654

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=100.00  E-value=7e-51  Score=418.60  Aligned_cols=376  Identities=22%  Similarity=0.341  Sum_probs=307.2

Q ss_pred             ccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHH
Q 009517           64 KVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSAD  143 (533)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~  143 (533)
                      ++.....+.+..+.+.+++..+.+++         +++|+.|+|+.                      ..       |+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~~~~~----------------------~~-------~~~   46 (383)
T TIGR03540         5 RIENLPPYLFAEIDKKKAEKKAEGVD---------VISLGIGDPDL----------------------PT-------PKH   46 (383)
T ss_pred             hhccCChhHHHHHHHHHHHHHhcCCC---------eEEeCCCCCCC----------------------CC-------CHH
Confidence            34444444444555666666665555         99999999874                      21       567


Q ss_pred             HHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHhccCCCCeEEEcC
Q 009517          144 SIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPI  222 (533)
Q Consensus       144 v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~  222 (533)
                      +.+++.+.+...   ....|++..|.++||+++|+++++.+|.+++++ +|++|+|+++++..+++.++ ++||+|++++
T Consensus        47 ~~~~~~~~~~~~---~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~l~~~~~~~~-~~gd~vlv~~  122 (383)
T TIGR03540        47 IVEALCKAAENP---ENHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLAFV-NPGDIVLVPD  122 (383)
T ss_pred             HHHHHHHHHhCC---CCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHHHHHHHHHhC-CCCCEEEEeC
Confidence            777777766532   256899999999999999999998889888876 69999999999999999998 8999999999


Q ss_pred             CcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHc
Q 009517          223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKE  302 (533)
Q Consensus       223 p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~  302 (533)
                      |+|+.|..+++..|++++.+|++.+++|.+|++++++++.+      ++++|++++||||||.++|.+++++|+++|++|
T Consensus       123 P~y~~~~~~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~~------~~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~  196 (383)
T TIGR03540       123 PGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIAK------KAKLMFINYPNNPTGAVAPLKFFKELVEFAKEY  196 (383)
T ss_pred             CCCcchHHHHHhcCCEEEEEecCcccCCccCHHHHHhhccc------cceEEEEeCCCCCcCccCCHHHHHHHHHHHHHc
Confidence            99999999999999999999998776788999999998865      799999999999999999999999999999999


Q ss_pred             CCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-
Q 009517          303 GLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-  381 (533)
Q Consensus       303 ~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-  381 (533)
                      |++||+||+|.++.|++. ...++..+.      ....++|++.||||.| |++|+|+||+++   ++++++.+..... 
T Consensus       197 ~~~ii~De~y~~l~~~~~-~~~~~~~~~------~~~~~~i~~~SfSK~~-g~~GlRiG~~i~---~~~l~~~~~~~~~~  265 (383)
T TIGR03540       197 NIIVCHDNAYSEITFDGY-KAPSFLEVD------GAKDVGIEFHSLSKTY-NMTGWRIGMAVG---NADLIAGLGKVKTN  265 (383)
T ss_pred             CEEEEEecchhhhccCCC-CCcCcccCC------CcccCEEEEEeccccc-CCccceeeEEeC---CHHHHHHHHHHHHh
Confidence            999999999999988542 233433321      1123579999999999 899999999997   9999998887765 


Q ss_pred             ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHH
Q 009517          382 VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAI  461 (533)
Q Consensus       382 ~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~  461 (533)
                      ...+++.+.|.++..+|++.          .++++++++.++++++.+.+.|++. |+.+..|++|+|+|++++.  +  
T Consensus       266 ~~~~~~~~~q~~~~~~l~~~----------~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~~l~~--~--  330 (383)
T TIGR03540       266 VDSGVFQAIQYAAIAALNGP----------QDVVKEIRKIYQRRRDLLLEALKKI-GIDVEKPKATFYVWVPVPE--G--  330 (383)
T ss_pred             cccCCChHHHHHHHHHHhCC----------HHHHHHHHHHHHHHHHHHHHHHHhC-CCEecCCCcceEEEEECCC--C--
Confidence            44667788899998888643          2456677888999999999999998 8999999999999977641  1  


Q ss_pred             HHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHH
Q 009517          462 KAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTD  522 (533)
Q Consensus       462 ~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~  522 (533)
                             + +...++.++++++||.+.||..|+. .+.++|||+++.+++++++++++|++
T Consensus       331 -------~-~~~~~~~~ll~~~gi~v~~g~~f~~-~~~~~~Ris~~~~~~~l~~~l~~l~~  382 (383)
T TIGR03540       331 -------Y-TSAEFAARLLEETGVVVTPGVGFGE-YGEGYIRISLTVPDERLEEAVARIKK  382 (383)
T ss_pred             -------C-CHHHHHHHHHHHCCEEEecchhhCc-cCCCeEEEEecCCHHHHHHHHHHHhh
Confidence                   1 2455677777889999999999973 34559999999777888888888764

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PRK09265 aminotransferase AlaT; Validated

Probab=100.00  E-value=1.2e-50  Score=419.37  Aligned_cols=392  Identities=29%  Similarity=0.506  Sum_probs=310.3

Q ss_pred             cccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCH
Q 009517           63 PKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSA  142 (533)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~  142 (533)
                      +++..+.++.+.++...+++....|++         +|+|++|+|...+.                   +.       |+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~i~l~~g~p~~~~~-------------------~~-------~~   52 (404)
T PRK09265          8 SKLENVCYDIRGPVLKEAKRLEEEGHK---------ILKLNIGNPAPFGF-------------------EA-------PD   52 (404)
T ss_pred             HHHHhcCcchhHHHHHHHHHHHHcCCC---------eEEecCCCCCcCCC-------------------CC-------CH
Confidence            455566777777777887777665555         99999999963221                   11       67


Q ss_pred             HHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcC
Q 009517          143 DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI  222 (533)
Q Consensus       143 ~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~  222 (533)
                      .+++++.+.+..     ...|++..|.++||+++|+++.++.+..+++++|++|+|+++++..+++.++ ++||+|++++
T Consensus        53 ~i~~~~~~~~~~-----~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~~~-~~gd~Vlv~~  126 (404)
T PRK09265         53 EILRDVIRNLPT-----AQGYSDSKGLFSARKAIMQYYQQKGIPDVDVDDIYIGNGVSELIVMAMQALL-NNGDEVLVPA  126 (404)
T ss_pred             HHHHHHHHHhhc-----CCCCCCCCCcHHHHHHHHHHHhccCCCCCCcccEEEeCChHHHHHHHHHHhC-CCCCEEEEeC
Confidence            888888776643     4579999999999999999998655446889999999999999999999998 8999999999


Q ss_pred             CcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHc
Q 009517          223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKE  302 (533)
Q Consensus       223 p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~  302 (533)
                      |+|..|...+...|++++.++++.+++|.+|++++++++++      ++++|++++||||||.+++.+++++|+++|+++
T Consensus       127 p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~------~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~  200 (404)
T PRK09265        127 PDYPLWTAAVSLSGGKPVHYLCDEEAGWFPDLDDIRSKITP------RTKAIVIINPNNPTGAVYSKELLEEIVEIARQH  200 (404)
T ss_pred             CCCcChHHHHHHcCCEEEEEecccccCCCCCHHHHHHhccc------cceEEEEECCCCCCCcCCCHHHHHHHHHHHHHC
Confidence            99999999999999999999887666788999999998866      789999999999999999999999999999999


Q ss_pred             CCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHH----HHHHHHH
Q 009517          303 GLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAE----VREQIYK  378 (533)
Q Consensus       303 ~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~----~~~~l~~  378 (533)
                      |++||+||+|.++.|++. +..++..+       .++.++|+++||||++ |+||+|+||+++. .+++    +++.+..
T Consensus       201 ~~~ii~De~y~~~~~~~~-~~~~~~~~-------~~~~~vi~~~S~SK~~-~~pGlRiG~~v~~-~~~~~~~~~~~~~~~  270 (404)
T PRK09265        201 NLIIFADEIYDKILYDGA-VHISIASL-------APDLLCVTFNGLSKAY-RVAGFRVGWMVLS-GPKKHAKGYIEGLDM  270 (404)
T ss_pred             CCEEEEehhhhhccCCCC-CcCCHHHc-------CCCceEEEEecchhhc-cCcccceEEEEEe-CchHHHHHHHHHHHH
Confidence            999999999999988653 34454443       3445789999999999 8899999999962 1343    4444433


Q ss_pred             hhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCH
Q 009517          379 VASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPE  458 (533)
Q Consensus       379 ~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~  458 (533)
                      .....++++.++|.++..+|.+.+        +.++.....+++.++++.+.+.|++++|+.++.|+||+|+|++++...
T Consensus       271 ~~~~~~~~~~~~q~~~~~~l~~~~--------~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~p~~g~~l~~~~~~~~  342 (404)
T PRK09265        271 LASMRLCANVPAQHAIQTALGGYQ--------SINELILPGGRLYEQRDRAWELLNAIPGVSCVKPKGALYAFPKLDPKV  342 (404)
T ss_pred             HhccccCCCcHHHHHHHHHhcCch--------hHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcceEEEEEecccc
Confidence            333457889999999999986422        111122223457778899999999888899999999999997765210


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHHHHH
Q 009517          459 KAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFM  528 (533)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~~  528 (533)
                              .+..++..++.+++.++||.+.||..|+. .+.++|||+++.+++++++++++|+++++.+.
T Consensus       343 --------~~~~~~~~~~~~~l~~~gv~v~pg~~F~~-~~~~~~Ri~~~~~~e~l~~~l~rl~~~l~~~~  403 (404)
T PRK09265        343 --------YPIHDDEQFVLDLLLQEKVLLVQGTGFNW-PEPDHFRIVTLPRVDDLEEAIGRIGRFLSGYR  403 (404)
T ss_pred             --------cCCCCHHHHHHHHHHhCCEEEECchhhCC-CCCCeEEEEeCCCHHHHHHHHHHHHHHHHHhc
Confidence                    01113445566788899999999999973 33459999999888999999999999887653

>PRK07682 hypothetical protein; Validated

Probab=100.00  E-value=4e-51  Score=419.66  Aligned_cols=354  Identities=25%  Similarity=0.453  Sum_probs=299.8

Q ss_pred             eeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHH
Q 009517           99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA  178 (533)
Q Consensus        99 ~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~  178 (533)
                      +|+|+.|+|+.                      +.       ++.+.+++.+.+..    ....|++..|.++||+++|+
T Consensus        22 ~i~l~~~~~~~----------------------~~-------~~~~~~~~~~~~~~----~~~~Y~~~~g~~~lr~~ia~   68 (378)
T PRK07682         22 VISLGVGEPDF----------------------VT-------PWNVREASIRSLEQ----GYTSYTANAGLLELRQEIAK   68 (378)
T ss_pred             eEEeCCCCCCC----------------------CC-------CHHHHHHHHHHHhc----CCCCCCCCCCcHHHHHHHHH
Confidence            89999999985                      21       45667777666653    25679999999999999999


Q ss_pred             HHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHH
Q 009517          179 GIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEV  257 (533)
Q Consensus       179 ~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l  257 (533)
                      ++++++|+.++++ +|++|+|+++|+..+++.++ ++||+|++++|+|+.|...++..|.+++.++++.+++|++|++++
T Consensus        69 ~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~-~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l  147 (378)
T PRK07682         69 YLKKRFAVSYDPNDEIIVTVGASQALDVAMRAII-NPGDEVLIVEPSFVSYAPLVTLAGGVPVPVATTLENEFKVQPAQI  147 (378)
T ss_pred             HHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhC-CCCCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCCCCHHHH
Confidence            9999889888876 79999999999999999998 899999999999999999999999999999987666789999999


Q ss_pred             HHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCC
Q 009517          258 KKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE  337 (533)
Q Consensus       258 ~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~  337 (533)
                      ++++.+      ++++|++++||||||.++|.+++++|+++|++|++++|+||+|.++.|++.  +.++..+. +     
T Consensus       148 ~~~~~~------~~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~~-~-----  213 (378)
T PRK07682        148 EAAITA------KTKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEA--YTSFASIK-G-----  213 (378)
T ss_pred             HhhcCc------ccEEEEEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCC--CCChhhcc-c-----
Confidence            999876      789999999999999999999999999999999999999999999998652  33433321 1     


Q ss_pred             CCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHH
Q 009517          338 KDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERD  416 (533)
Q Consensus       338 ~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~  416 (533)
                      .+.++|++.||||.| |+||+|+||+++   ++++++.+.+... ..++++.+.|.++..+|++..          .+++
T Consensus       214 ~~~~~i~~~S~SK~~-~~~GlR~G~~~~---~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~----------~~~~  279 (378)
T PRK07682        214 MRERTILISGFSKGF-AMTGWRLGFIAA---PVYFSEAMLKIHQYSMMCAPTMAQFAALEALRAGN----------DDVI  279 (378)
T ss_pred             ccCCEEEEecCcccc-cChhhhhhhhhc---CHHHHHHHHHHHHhhccCCCHHHHHHHHHHHhCCh----------HHHH
Confidence            123689999999999 899999999998   9999999987765 557788999999999996532          3357


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCC
Q 009517          417 GILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQV  496 (533)
Q Consensus       417 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~  496 (533)
                      .+++.++++++.+.+.|+++ |+.+..|+|+||+|+.+....          . ++..++..+++++||.+.||..|+ .
T Consensus       280 ~~~~~~~~~~~~~~~~L~~~-~~~~~~p~g~~~~~~~~~~~~----------~-~~~~~~~~ll~~~gv~v~pg~~f~-~  346 (378)
T PRK07682        280 RMRDSYRKRRNFFVTSFNEI-GLTCHVPGGAFYAFPSISSTG----------L-SSEEFAEQLLLEEKVAVVPGSVFG-E  346 (378)
T ss_pred             HHHHHHHHHHHHHHHHHHHC-CCccCCCCeeEEEEEeccCCC----------C-CHHHHHHHHHHhCCEEEcCchhhC-c
Confidence            78889999999999999998 888899999999997654111          1 345566777778899999999997 3


Q ss_pred             CCCceEEEEecCCcCcHHHHHHHHHHHHHHH
Q 009517          497 PGTWHFRCTILPQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       497 ~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~  527 (533)
                      .+.+++||+++.+++++++++++|+++++++
T Consensus       347 ~~~~~iRis~~~~~~~l~~~l~~l~~~l~~~  377 (378)
T PRK07682        347 SGEGFIRCSYATSLEQLQEAMKRMKRFVENK  377 (378)
T ss_pred             CCCCeEEEEeCCCHHHHHHHHHHHHHHHhhc
Confidence            4456999999987889999999999988764

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=100.00  E-value=2.9e-50  Score=416.24  Aligned_cols=361  Identities=23%  Similarity=0.385  Sum_probs=295.0

Q ss_pred             eeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHH
Q 009517           99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA  178 (533)
Q Consensus        99 ~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~  178 (533)
                      +++|++|.|+..+.                         ...++.+.+++.+.+...   ....|.+..|..+||+++|+
T Consensus        33 ~i~l~~g~p~~~~~-------------------------~~~~~~~~~~~~~~~~~~---~~~~Y~~~~g~~~lr~aia~   84 (401)
T TIGR01264        33 MIKLSIGDPTVFGN-------------------------LPTDPEVMQAMKDSLDSG---KYNGYAPTVGALSAREAIAS   84 (401)
T ss_pred             eeecCCCCCCCcCC-------------------------CCCCHHHHHHHHHHHhcc---CCCCCCCCCCCHHHHHHHHH
Confidence            89999999962110                         111577777777776642   24579999999999999999


Q ss_pred             HHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHH
Q 009517          179 GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVK  258 (533)
Q Consensus       179 ~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~  258 (533)
                      ++++ .+..+++++|++|+|+++++..++.+++ ++||+|++++|+|..|...++..|++++.++++.+++|++|++.++
T Consensus        85 ~~~~-~~~~~~~~~i~~t~G~~~al~~~~~~l~-~~gd~v~i~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~l~  162 (401)
T TIGR01264        85 YYHN-PDGPIEADDVVLCSGCSHAIEMCIAALA-NAGQNILVPRPGFPLYETLAESMGIEVKLYNLLPDKSWEIDLKQLE  162 (401)
T ss_pred             HHhh-cCCCCCHHHEEECcChHHHHHHHHHHhC-CCCCEEEEeCCCChhHHHHHHHcCCEEEEeecCCccCCCCCHHHHH
Confidence            9986 4666889999999999999999999998 7999999999999999999999999999999877667899999999


Q ss_pred             HHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCC
Q 009517          259 KQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEK  338 (533)
Q Consensus       259 ~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (533)
                      +.+++      ++++|++++||||||.+++.+++++|+++|+++|++||+||+|.+|.|++. .+.++..+       ++
T Consensus       163 ~~~~~------~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~~-------~~  228 (401)
T TIGR01264       163 SLIDE------KTAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGA-TFEPLASL-------SS  228 (401)
T ss_pred             HHhcc------CceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCc-ccccHHHc-------CC
Confidence            98876      689999999999999999999999999999999999999999999988653 34444443       34


Q ss_pred             CceEEEEecCCccCCCCCCCeeEEEEEecCCH------HHHHHHHHhhhccccCChHHHHHHHHHcCCCCCCChhHHHHH
Q 009517          339 DISLVSFQSVSKGYYGECGKRGGYMEVTGFSA------EVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYC  412 (533)
Q Consensus       339 ~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~------~~~~~l~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~  412 (533)
                      +.++|+++||||+| ++||+|+||+++   ++      ++++.+.......++++.+.|.++..+|.+.         ..
T Consensus       229 ~~~vi~~~SfSK~~-~~~GlRiG~iv~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~---------~~  295 (401)
T TIGR01264       229 TVPILSCGGLAKRW-LVPGWRLGWIII---HDRRGILRDIRDGLVKLSQRILGPCTIVQGALPSILLRT---------PQ  295 (401)
T ss_pred             CCcEEEEccCcccC-CCccceEEEEEe---cCcchhHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHhC---------cH
Confidence            44689999999998 899999999998   42      3555555544345678899999999888531         12


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCC
Q 009517          413 AERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSG  492 (533)
Q Consensus       413 ~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~  492 (533)
                      ++++++++.++++++.+.+.|++++|+.+..|+||+|+|++++...       ..+..++..++..+++++||++.||..
T Consensus       296 ~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~g~f~~~~~~~~~-------~~~~~~~~~~~~~l~~~~gI~v~pg~~  368 (401)
T TIGR01264       296 EYFDGTLSVLESNAMLCYGALAAVPGLRPVMPSGAMYMMVGIEMEH-------FPEFKNDVEFTERLVAEQSVFCLPGSC  368 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeeEEEEEecccc-------cCCCCCHHHHHHHHHHhCCEEEeCchh
Confidence            5567788889999999999999987888889999999998765210       001113456677777789999999999


Q ss_pred             CCCCCCCceEEEEecCCcCcHHHHHHHHHHHHHH
Q 009517          493 FGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       493 f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~  526 (533)
                      |+ .++  ++||+++.+++++++++++|.+++++
T Consensus       369 f~-~~~--~iRis~~~~~~~l~~~l~rl~~~~~~  399 (401)
T TIGR01264       369 FE-YPG--FFRVVLTVPVVMMEEACSRIQEFCER  399 (401)
T ss_pred             cC-CCC--eEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence            97 343  99999997788999999999998865

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>PRK07337 aminotransferase; Validated

Probab=100.00  E-value=2.9e-50  Score=414.61  Aligned_cols=381  Identities=25%  Similarity=0.349  Sum_probs=309.5

Q ss_pred             cccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCH
Q 009517           63 PKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSA  142 (533)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~  142 (533)
                      +++....++.+.++...+.+.+..+++         +++|+.|.|+.                      +.       |+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~i~l~~~~~~~----------------------~~-------~~   46 (388)
T PRK07337          5 ARVDAIEPFYVMELAKEAQALERAGRD---------IIHMGIGEPDF----------------------TA-------PE   46 (388)
T ss_pred             hHhHhcCchHHHHHHHHHHHHHhcCCC---------EEEeCCcCCCC----------------------CC-------CH
Confidence            344445555555566666666554444         99999999874                      21       56


Q ss_pred             HHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcC
Q 009517          143 DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI  222 (533)
Q Consensus       143 ~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~  222 (533)
                      .+.+++.+.+..    ....|++..|.++||+++|+++++.+|+.+++++|++|+|+++|+..++..++ ++||+|++++
T Consensus        47 ~~~~~~~~~~~~----~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~-~~gd~Vlv~~  121 (388)
T PRK07337         47 PVVEAAARALRR----GVTQYTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLLACLALV-ERGDEVLMPD  121 (388)
T ss_pred             HHHHHHHHHHhc----CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHHHHHHHHhc-CCCCEEEEeC
Confidence            778877777654    25679999999999999999999988988999999999999999999999998 8999999999


Q ss_pred             CcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHc
Q 009517          223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKE  302 (533)
Q Consensus       223 p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~  302 (533)
                      |+|..+...+...|++++.++++.+++|++|++++++.+++      ++++|++++||||||.+++.+++++|+++|+++
T Consensus       122 p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~  195 (388)
T PRK07337        122 PSYPCNRHFVAAAEGRPVLVPSGPAERFQLTAADVEAAWGE------RTRGVLLASPSNPTGTSIAPDELRRIVEAVRAR  195 (388)
T ss_pred             CCchhhHHHHHHcCCEEEEeecCCccCCcCCHHHHHhhcCc------cceEEEEECCCCCCCcCcCHHHHHHHHHHHHHC
Confidence            99999999999999999999998767899999999998876      789999999999999999999999999999999


Q ss_pred             CCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-
Q 009517          303 GLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-  381 (533)
Q Consensus       303 ~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-  381 (533)
                      ++++|+||+|.++.|.+.  ..++..    +     +.++|++.||||.+ |++|+|+||+++   ++++++.+.+... 
T Consensus       196 ~~~ii~De~y~~~~~~~~--~~~~~~----~-----~~~vi~~~S~SK~~-~~~G~RiG~~~~---~~~l~~~l~~~~~~  260 (388)
T PRK07337        196 GGFTIVDEIYQGLSYDAA--PVSALS----L-----GDDVITINSFSKYF-NMTGWRLGWLVV---PEALVGTFEKLAQN  260 (388)
T ss_pred             CCEEEEeccccccccCCC--CcChhh----c-----cCCEEEEEechhhc-CCchhheeeeec---CHHHHHHHHHHHHH
Confidence            999999999999888543  223222    1     12589999999999 899999999998   8999998887764 


Q ss_pred             ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceE-ecCCceeEEecccCCCHHH
Q 009517          382 VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITC-NKAEGAMYLFPRIQLPEKA  460 (533)
Q Consensus       382 ~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~-~~~~gg~~~~~~~~~~~~~  460 (533)
                      ...+.+.+.|.++..++.+..     +    .+.++.++.++++++.+.+.|+++ |+.+ ..|+||+|+|++++...  
T Consensus       261 ~~~~~s~~~q~~~~~~l~~~~-----~----~~~~~~~~~~~~~r~~~~~~L~~~-~~~~~~~p~~g~f~~~~~~~~~--  328 (388)
T PRK07337        261 LFICASALAQHAALACFEPDT-----L----AIYERRRAEFKRRRDFIVPALESL-GFKVPVMPDGAFYVYADCRGVA--  328 (388)
T ss_pred             hccCCChHHHHHHHHHhccCc-----h----HHHHHHHHHHHHHHHHHHHHHHhc-CCccccCCCeeEEEEEeccccc--
Confidence            456788999999988886321     1    234567888999999999999997 7664 57899999998765100  


Q ss_pred             HHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHH
Q 009517          461 IKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l  524 (533)
                           ..+..++.+++.++++++||.+.||..|+...+.++|||+++.+++.|++++++|.+++
T Consensus       329 -----~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~~~~~~l~~~l~rl~~~l  387 (388)
T PRK07337        329 -----HPAAGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYATSMSRLEEAVARLGKLF  387 (388)
T ss_pred             -----CCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEecCCHHHHHHHHHHHHHHh
Confidence                 00112355667778888999999999998544456999999977888999999998764

>PRK06108 aspartate aminotransferase; Provisional

Probab=100.00  E-value=2.9e-50  Score=414.32  Aligned_cols=354  Identities=26%  Similarity=0.408  Sum_probs=299.7

Q ss_pred             eeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHH
Q 009517           99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA  178 (533)
Q Consensus        99 ~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~  178 (533)
                      +|+|++|+|+.                      +.       |+.+.+++.+.+.+    ....|++..|.++||+++++
T Consensus        26 ~i~l~~g~~~~----------------------~~-------~~~~~~~~~~~~~~----~~~~Y~~~~G~~~lr~~la~   72 (382)
T PRK06108         26 VLPLWFGESDL----------------------PT-------PDFIRDAAAAALAD----GETFYTHNLGIPELREALAR   72 (382)
T ss_pred             eEEecCCCCCC----------------------CC-------CHHHHHHHHHHHhc----CCCCCCCCCCCHHHHHHHHH
Confidence            89999999875                      22       57788887777765    24569999999999999999


Q ss_pred             HHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCC-CCCCCCHHHH
Q 009517          179 GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEA-TGWGLETSEV  257 (533)
Q Consensus       179 ~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~-~~~~ld~~~l  257 (533)
                      ++.+.+|..+++++|++|+|+++++..++..++ ++||+|++++|+|..|...++..|++++.++++.+ .+|.+|++.+
T Consensus        73 ~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~-~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l  151 (382)
T PRK06108         73 YVSRLHGVATPPERIAVTSSGVQALMLAAQALV-GPGDEVVAVTPLWPNLVAAPKILGARVVCVPLDFGGGGWTLDLDRL  151 (382)
T ss_pred             HHHHHhCCCcCcceEEEeCChHHHHHHHHHHhc-CCCCEEEEeCCCccchHHHHHHCCCEEEEeeCCCCCCCccCCHHHH
Confidence            999888988899999999999999999999998 79999999999999999999999999999999753 4688999999


Q ss_pred             HHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCC
Q 009517          258 KKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE  337 (533)
Q Consensus       258 ~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~  337 (533)
                      ++.+++      ++++|++++||||||.++|.+++++|+++|+++|+++|+||+|.++.|++.....++..+.      .
T Consensus       152 ~~~~~~------~~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~------~  219 (382)
T PRK06108        152 LAAITP------RTRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIA------E  219 (382)
T ss_pred             HHhcCc------cceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcC------C
Confidence            998875      7899999999999999999999999999999999999999999999886222333333321      2


Q ss_pred             CCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHH
Q 009517          338 KDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERD  416 (533)
Q Consensus       338 ~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~  416 (533)
                      .+.++|++.||||.| |++|+|+||+++   ++++++.+.+... ...+++.+.|.++..+|.+.          .++++
T Consensus       220 ~~~~~i~~~S~SK~~-g~~G~RiG~~~~---~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~----------~~~~~  285 (382)
T PRK06108        220 PDDRIIFVNSFSKNW-AMTGWRLGWLVA---PPALGQVLEKLIEYNTSCVAQFVQRAAVAALDEG----------EDFVA  285 (382)
T ss_pred             CcCCEEEEeechhhc-cCcccceeeeeC---CHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCC----------hHHHH
Confidence            234689999999998 889999999998   8999999887765 55778999999999988643          24456


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCC
Q 009517          417 GILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQV  496 (533)
Q Consensus       417 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~  496 (533)
                      +++++++++++.+.+.|++++|+.+..|+||+|+|++++..            .+...++..+++++||.+.||..|+ .
T Consensus       286 ~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~g~~~~~~l~~~------------~~~~~~~~~ll~~~gV~v~pg~~f~-~  352 (382)
T PRK06108        286 ELVARLRRSRDHLVDALRALPGVEVAKPDGAMYAFFRIPGV------------TDSLALAKRLVDEAGLGLAPGTAFG-P  352 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCcccCCCeeEEEEEeCCCC------------CCHHHHHHHHHHhCCEEEeCchhhC-C
Confidence            77888999999999999988889999999999999766411            1345667777788999999999997 4


Q ss_pred             CCCceEEEEecCCcCcHHHHHHHHHHHHH
Q 009517          497 PGTWHFRCTILPQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       497 ~g~~~iRis~~~~~e~i~~~~~~l~~~l~  525 (533)
                      .+.++||||++.+++++++++++|+++++
T Consensus       353 ~~~~~~Ris~~~~~~~l~~~l~~l~~~l~  381 (382)
T PRK06108        353 GGEGFLRWCFARDPARLDEAVERLRRFLA  381 (382)
T ss_pred             CCCCEEEEEecCCHHHHHHHHHHHHHHHh
Confidence            44569999998888899999999998764

>PRK07324 transaminase; Validated

Probab=100.00  E-value=7.1e-51  Score=415.89  Aligned_cols=344  Identities=22%  Similarity=0.345  Sum_probs=295.9

Q ss_pred             ceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHH
Q 009517           98 EILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA  177 (533)
Q Consensus        98 ~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia  177 (533)
                      ++++|++|+|++                      .+       |+.+ +++.+++.+    ....|++..|.++||+++|
T Consensus        27 ~~~~~~~~e~~~----------------------~~-------~~~~-~~~~~~~~~----~~~~Y~~~~G~~~lr~~ia   72 (373)
T PRK07324         27 CIDSLTLEELLA----------------------LA-------GKNP-EAFYQELGQ----KKLTYGWIEGSPEFKEAVA   72 (373)
T ss_pred             CCCCCcHHHHHh----------------------cc-------Ccch-HHHHHHHhc----CCccCCCCCCCHHHHHHHH
Confidence            399999999985                      33       4556 777777765    3568999999999999999


Q ss_pred             HHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHH
Q 009517          178 AGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEV  257 (533)
Q Consensus       178 ~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l  257 (533)
                      +++..     +++++|++|+|+++++..++..++ ++||+|+++.|+|..+...++..|++++.++++.+++|.+|++.+
T Consensus        73 ~~~~~-----~~~~~vi~t~G~~~al~~~~~~l~-~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l  146 (373)
T PRK07324         73 SLYQN-----VKPENILQTNGATGANFLVLYALV-EPGDHVISVYPTYQQLYDIPESLGAEVDYWQLKEENGWLPDLDEL  146 (373)
T ss_pred             HHhcC-----CChhhEEEcCChHHHHHHHHHHhC-CCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHH
Confidence            99852     678999999999999999999998 899999999999999999999999999999998877889999999


Q ss_pred             HHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCC
Q 009517          258 KKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE  337 (533)
Q Consensus       258 ~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~  337 (533)
                      ++.+++      ++|+|++++||||||.+++.+++++|+++|++||++||+||+|.++.+++.  ..++...       .
T Consensus       147 ~~~~~~------~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~--~~s~~~~-------~  211 (373)
T PRK07324        147 RRLVRP------NTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGS--TPSIADL-------Y  211 (373)
T ss_pred             HHhCCC------CCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCC--CCChhhc-------c
Confidence            988865      789999999999999999999999999999999999999999999888542  3343332       1


Q ss_pred             CCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHH
Q 009517          338 KDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERD  416 (533)
Q Consensus       338 ~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~  416 (533)
                      +  ++|+++||||++ |++|+|+||+++   ++++++.+.+.+. .+.+++.+.|.++..+|+.          ....++
T Consensus       212 ~--~~I~~~s~SK~~-~~~G~RiG~i~~---~~~li~~~~~~~~~~~~~~~~~~q~~a~~~l~~----------~~~~l~  275 (373)
T PRK07324        212 E--KGISTNSMSKTY-SLPGIRVGWIAA---NEEVIDILRKYRDYTMICAGVFDDMLASLALEH----------RDAILE  275 (373)
T ss_pred             C--CEEEEecchhhc-CCccceeEEEec---CHHHHHHHHHHhCcEEecCChHHHHHHHHHHcC----------HHHHHH
Confidence            2  468999999999 899999999998   9999999998876 5678889999999888863          234567


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCC
Q 009517          417 GILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQV  496 (533)
Q Consensus       417 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~  496 (533)
                      ++++.++++++.+.+.|++.+++.++.|+||+|+|+.++.+            .++..++.++++++||.+.||+.|+. 
T Consensus       276 ~~~~~~~~~~~~l~~~l~~~~~~~~~~p~gg~~~~i~~~~~------------~~~~~~~~~ll~~~gv~v~pg~~F~~-  342 (373)
T PRK07324        276 RNRKIVRTNLAILDEWVAKEPRVSYVKPKAVSTSFVKLDVD------------MPSEDFCLKLLKETGVLLVPGNRFDL-  342 (373)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCceEECCCceEEEEEEeCCC------------CCHHHHHHHHHHhcCEEEECccccCC-
Confidence            78888999999999999888789999999999999877633            13566788888889999999999984 


Q ss_pred             CCCceEEEEecCCcCcHHHHHHHHHHHHHHH
Q 009517          497 PGTWHFRCTILPQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       497 ~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~  527 (533)
                      ++  +|||+++.+++.+++++++|+++++++
T Consensus       343 ~~--~iRis~~~~~~~l~~~l~rl~~~l~~~  371 (373)
T PRK07324        343 EG--HVRIGYCCDTETLKKGLKKLSEFLREF  371 (373)
T ss_pred             CC--eEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence            44  999999988899999999999998764

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=100.00  E-value=6.3e-50  Score=418.47  Aligned_cols=346  Identities=21%  Similarity=0.337  Sum_probs=283.1

Q ss_pred             ccccCCCcccHHHHHHHHHHHHhhcCC--CCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHH-HhC
Q 009517          160 TGAYSHSQGIKGLRDTIAAGIEARDGF--PADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA-LHG  236 (533)
Q Consensus       160 ~~~Y~~~~G~~~lr~aia~~~~~~~g~--~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~-~~g  236 (533)
                      ...|++..|.++||+++|+++++++|.  ++++++|++|+|+++++..++.+++ ++||.|++++|+|+.|...+. ..|
T Consensus        79 l~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l~-~pGd~Vlv~~P~Y~~~~~~~~~~~g  157 (468)
T PLN02450         79 LALFQDYHGLPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLA-EPGDAFLLPTPYYPGFDRDLKWRTG  157 (468)
T ss_pred             hhcCCCCCChHHHHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHhC-CCCCEEEECCCCCCchHHHHhhcCC
Confidence            456999999999999999999987774  4789999999999999999999998 899999999999999988888 589


Q ss_pred             CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEcccccccc
Q 009517          237 GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENV  316 (533)
Q Consensus       237 ~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~  316 (533)
                      +++++++++++++|.+|++.++++++++.+.+.++++|+++|||||||.++|.+++++|+++|++|+++||+||+|.++.
T Consensus       158 ~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~  237 (468)
T PLN02450        158 VEIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTV  237 (468)
T ss_pred             cEEEEEecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccc
Confidence            99999999877789999999999998765556689999999999999999999999999999999999999999999998


Q ss_pred             ccCCCCcccHHHHHhhc--CCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCC-HHHHHHHHHhhhccccCChHHHHH
Q 009517          317 YVPEKKFHSFKKVSRSM--GYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFS-AEVREQIYKVASVNLCSNISGQIL  393 (533)
Q Consensus       317 ~~~~~~~~~~~~~~~~~--~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~-~~~~~~l~~~~~~~~~~~~~~q~a  393 (533)
                      |++. ++.++..+....  .+.++..+|++++||||.| |++|+|+||+++   + +.+++.+.+.. ...+.+.+.|.+
T Consensus       238 f~~~-~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~-~l~GlRiG~li~---~~~~l~~~~~~~~-~~~~~s~~~Q~a  311 (468)
T PLN02450        238 FDSP-GFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDL-GLPGFRVGAIYS---NDEMVVSAATKMS-SFGLVSSQTQYL  311 (468)
T ss_pred             cCCC-CcccHHHHhhhcccccCCCCCcEEEEEeccccC-CCCCccEEEEEE---CCHHHHHHHHHHh-hcCCCCHHHHHH
Confidence            8653 455554443210  0001234799999999999 899999999998   5 45666666553 334578899999


Q ss_pred             HHHHcCCCCCCChhHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCCh
Q 009517          394 ASLVMSPPKVGDESYESYC-AERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPD  472 (533)
Q Consensus       394 ~~~~L~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~  472 (533)
                      +..+|+++.        +. .+++.++++++++++.+.+.|+++ |+.+.+|+||||+|++++  ... +   ...+...
T Consensus       312 ~~~~L~~~~--------~~~~~l~~~~~~l~~rr~~l~~~L~~~-gi~~~~~~~g~flwi~l~--~~~-~---~~~~~~~  376 (468)
T PLN02450        312 LSALLSDKK--------FTKNYLEENQKRLKQRQKKLVSGLEAA-GIKCLKSNAGLFCWVDMR--HLL-K---SNTFEAE  376 (468)
T ss_pred             HHHHhCCch--------hHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcccCCCceEEEEEEch--Hhc-C---cCCchHH
Confidence            999998643        22 245677889999999999999998 899999999999997764  110 0   0011123


Q ss_pred             HHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec-CCcCcHHHHHHHHHHHHHHHH
Q 009517          473 AFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-PQEDKIPAIVTRLTDFHKNFM  528 (533)
Q Consensus       473 ~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~~~~l~~~l~~~~  528 (533)
                      ..++.++++++||.+.||..|+. .+.++|||+++ .+++++++++++|++++++..
T Consensus       377 ~~l~~~ll~~~gV~v~PG~~f~~-~~~g~~Rl~f~~~~~~~l~~~l~ri~~~l~~~~  432 (468)
T PLN02450        377 MELWKKIVYEVKLNISPGSSCHC-TEPGWFRVCFANMSEETLDLAMKRLKSFVESDS  432 (468)
T ss_pred             HHHHHHHHHhCCEEEeCccccCC-CCCCEEEEEecCCCHHHHHHHHHHHHHHHHhcc
Confidence            45667788889999999999973 44569999998 688999999999999987654

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=100.00  E-value=1.1e-49  Score=412.81  Aligned_cols=367  Identities=20%  Similarity=0.338  Sum_probs=298.6

Q ss_pred             eeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHH
Q 009517           99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA  178 (533)
Q Consensus        99 ~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~  178 (533)
                      +|+|++|.|+..                 +.++        +|+.+.+++.+.+...   ....|++..|.++||+++|+
T Consensus        35 ~i~l~~g~p~~~-----------------~~~~--------p~~~~~~a~~~~~~~~---~~~~Y~~~~G~~~Lr~aia~   86 (412)
T PTZ00433         35 IIKLSVGDPTLD-----------------GNLL--------TPAIQTKALVEAVDSQ---ECNGYPPTVGSPEAREAVAT   86 (412)
T ss_pred             eeecCCcCCCCc-----------------CCCC--------CCHHHHHHHHHHhhcC---CCCCCCCCCCcHHHHHHHHH
Confidence            999999999731                 0011        1567777777666541   25689999999999999999


Q ss_pred             HHHhhc------CCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCC
Q 009517          179 GIEARD------GFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGL  252 (533)
Q Consensus       179 ~~~~~~------g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~l  252 (533)
                      ++++++      |..+++++|++|+|+++++..+++.++ ++||+|+++.|+|..|...++..|++++.++++++.+|++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~-~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~  165 (412)
T PTZ00433         87 YWRNSFVHKESLKSTIKKDNVVLCSGVSHAILMALTALC-DEGDNILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWEA  165 (412)
T ss_pred             HHHhhccccccccCCCChhhEEEeCChHHHHHHHHHHhc-CCCCEEEEccCCcccHHHHHHHcCCEEEEEecCccccCcC
Confidence            998765      466889999999999999999999998 8999999999999999999999999999999987778999


Q ss_pred             CHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhh
Q 009517          253 ETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRS  332 (533)
Q Consensus       253 d~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~  332 (533)
                      |++++++++++      ++++|+++|||||||.+++.+++++|+++|+++|++||+||+|.+|.|++. .+.++..+   
T Consensus       166 d~~~l~~~~~~------~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~~---  235 (412)
T PTZ00433        166 DLDEIRRLVDD------RTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGA-TFTSVADF---  235 (412)
T ss_pred             CHHHHHHHhcc------CceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCC-Cccchhhc---
Confidence            99999998876      789999999999999999999999999999999999999999999988653 33444333   


Q ss_pred             cCCCCCCceEEEEecCCccCCCCCCCeeEEEEEec---CCHHHHHHHHHhhhccccCChHHHHHHHHHcCCCCCCChhHH
Q 009517          333 MGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTG---FSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYE  409 (533)
Q Consensus       333 ~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~---~~~~~~~~l~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~  409 (533)
                          ++..++|+++||||+| |+||+|+||+++.+   .++++++.+.+.....++++.+.|.++..+|.+.        
T Consensus       236 ----~~~~~~i~~~SfSK~~-~~pGlRlG~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~--------  302 (412)
T PTZ00433        236 ----DTTVPRVILGGTAKNL-VVPGWRLGWLLLVDPHGNGGDFLDGMKRLGMLVCGPCSVVQAALGEALLNT--------  302 (412)
T ss_pred             ----cCCCceEEEccchhhc-CCCCeeEEEEEEeCCcccHHHHHHHHHHHhhccCCCChHHHHHHHHHHhcC--------
Confidence                2233579999999999 89999999998621   1246777777665445688999999998888531        


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEc
Q 009517          410 SYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVP  489 (533)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~p  489 (533)
                       ...+++++++.++++++.+.+.|++..|+.++.|+||+|+|++++... .      .+..++..++..+++++||.+.|
T Consensus       303 -~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~gg~f~~~~l~~~~-~------~~~~~~~~~~~~ll~~~gV~v~p  374 (412)
T PTZ00433        303 -PQEHLEQIVAKLEEGAMVLYNHIGECIGLSPTMPRGSMFLMSRLDLEK-F------RDIKSDVEFYEKLLEEENVQVLP  374 (412)
T ss_pred             -cHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCeeEEEEEEechhh-c------CCCCCHHHHHHHHHHhcCEEEeC
Confidence             124567788899999999999999866888899999999997664210 0      01123456677777778999999


Q ss_pred             CCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHHHHH
Q 009517          490 GSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFM  528 (533)
Q Consensus       490 g~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~~  528 (533)
                      |..|+. .+  +|||+++..++++++++++|.+++++++
T Consensus       375 g~~f~~-~~--~iRis~~~~~e~l~~al~~l~~~~~~~~  410 (412)
T PTZ00433        375 GEIFHM-PG--FTRLTISRPVEVLREAVERIKAFCERHK  410 (412)
T ss_pred             ccccCC-CC--eEEEEecCCHHHHHHHHHHHHHHHHHhc
Confidence            999973 33  9999999778889999999999988665

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=100.00  E-value=1.5e-49  Score=413.30  Aligned_cols=362  Identities=23%  Similarity=0.362  Sum_probs=308.3

Q ss_pred             cceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCC-ccccCCCcccHHHHHH
Q 009517           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRA-TGAYSHSQGIKGLRDT  175 (533)
Q Consensus        97 ~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~-~~~Y~~~~G~~~lr~a  175 (533)
                      +.+++|+.|.|+                            +..||.+.++++...+....... ...|.+..|.++||++
T Consensus        89 ~~~i~f~~g~p~----------------------------~~~fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~  140 (459)
T COG1167          89 PSVIDFAGGLPD----------------------------PSLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREA  140 (459)
T ss_pred             CceecCCCCCCC----------------------------cccCCHHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHH
Confidence            348999999876                            34457888887765544322213 5789999999999999


Q ss_pred             HHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHH
Q 009517          176 IAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETS  255 (533)
Q Consensus       176 ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~  255 (533)
                      +++++....|+.+++++|++|+|+++|+.++++.++ +|||+|++++|+|.+...+++.+|++++.||++++   |+|++
T Consensus       141 ia~~l~~~~g~~~~~~~IiiT~G~q~al~l~~~~l~-~pGd~v~vE~PtY~~~~~~~~~~g~~~~~vp~d~~---G~~~e  216 (459)
T COG1167         141 IAAYLLARRGISCEPEQIVITSGAQQALDLLLRLLL-DPGDTVLVEDPTYPGALQALEALGARVIPVPVDED---GIDPE  216 (459)
T ss_pred             HHHHHHHhcCCccCcCeEEEeCCHHHHHHHHHHHhC-CCCCEEEEcCCCcHHHHHHHHHcCCcEEecCCCCC---CCCHH
Confidence            999999888999999999999999999999999999 89999999999999999999999999999999966   99999


Q ss_pred             HHHHHHHHHHhcCCCeeEEEEe-CCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcC
Q 009517          256 EVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG  334 (533)
Q Consensus       256 ~l~~~i~~~~~~g~~~~~iil~-~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~  334 (533)
                      .|++.++..     ++|+++++ +-|||||.++|.++.++|+++|++||++||+||+|++|.|++. +..++..+     
T Consensus       217 ~le~~~~~~-----~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~-p~~~l~~l-----  285 (459)
T COG1167         217 ALEEALAQW-----KPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGP-PPPPLKAL-----  285 (459)
T ss_pred             HHHHHHhhc-----CCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCC-CCCChHhh-----
Confidence            999999885     78999888 6799999999999999999999999999999999999999764 33455444     


Q ss_pred             CCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHH
Q 009517          335 YGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCA  413 (533)
Q Consensus       335 ~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~  413 (533)
                        +.+++||+++||||+++  ||+|+||+++   ++++++.+...+. ...+++.+.|.+++..+.++.        +.+
T Consensus       286 --d~~~rViy~gSFSK~l~--PglRlG~vv~---p~~~~~~~~~~k~~~~~~~s~~~Q~~la~~l~~G~--------~~~  350 (459)
T COG1167         286 --DAPGRVIYLGSFSKTLA--PGLRLGYVVA---PPELIEKLLRLKQAADLGPSSLSQAALAAFLLSGH--------YDR  350 (459)
T ss_pred             --CCCCCEEEEeeehhhcc--cccceeeeeC---CHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCC--------HHH
Confidence              46679999999999994  8999999998   9999999988876 778899999999999887443        567


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcC-C-CceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEc-C
Q 009517          414 ERDGILSSLARRAKTLEDAFNSL-E-GITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVP-G  490 (533)
Q Consensus       414 ~~~~~~~~~~~~~~~l~~~L~~~-~-g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~p-g  490 (533)
                      +++++++.|+++++.+.+.|.+. + ++.+..|.||||+|++++.+           + ++..++ ..+.++||.+.| |
T Consensus       351 hl~~lR~~y~~rr~~l~~~L~~~~~~~~~~~~p~gG~flwl~l~~~-----------~-~~~~l~-~~a~~~gv~i~~~g  417 (459)
T COG1167         351 HLRRLRREYARRRDALLEALAEYLPELATWTRPEGGLFLWLELPEG-----------I-DARELL-AAALEKGVVVTPLG  417 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCeeeecCCceEEEEEEcCCC-----------C-CHHHHH-HHHHHCCCEEEcCC
Confidence            78899999999999999999997 3 68899999999999766532           1 233333 555668999999 9


Q ss_pred             CCCCCCC-CCceEEEEec-CCcCcHHHHHHHHHHHHHHHHH
Q 009517          491 SGFGQVP-GTWHFRCTIL-PQEDKIPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       491 ~~f~~~~-g~~~iRis~~-~~~e~i~~~~~~l~~~l~~~~~  529 (533)
                      ..|.... ..++|||+++ .++++|++++++|.+++++...
T Consensus       418 ~~f~~~~~~~~~~Rl~~s~~~~e~i~~gi~~l~~~~~~~~~  458 (459)
T COG1167         418 SAFSADGDPRNGLRLSFSSPSEEEIEEGIKRLAALLREAAA  458 (459)
T ss_pred             ccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            9997543 4569999998 8889999999999999987653

>PRK08912 hypothetical protein; Provisional

Probab=100.00  E-value=1.7e-49  Score=408.69  Aligned_cols=356  Identities=21%  Similarity=0.354  Sum_probs=296.0

Q ss_pred             eeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHH
Q 009517           99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA  178 (533)
Q Consensus        99 ~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~  178 (533)
                      +++|+.|.|+.                      +.       |+.+++++.+.+..    ....|++..|.++||+++++
T Consensus        28 ~i~l~~g~p~~----------------------~~-------p~~~~~~~~~~~~~----~~~~Y~~~~G~~~lr~~ia~   74 (387)
T PRK08912         28 AINLGQGFPDD----------------------PG-------PEDVRRAAADALLD----GSNQYPPMMGLPELRQAVAA   74 (387)
T ss_pred             eEEccCCCCCC----------------------CC-------CHHHHHHHHHHHhc----CCCCCCCCCCcHHHHHHHHH
Confidence            89999999874                      21       67788887776654    24679999999999999999


Q ss_pred             HHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHH
Q 009517          179 GIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEV  257 (533)
Q Consensus       179 ~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l  257 (533)
                      ++++.+|++++++ +|++|+|+++++..++..++ ++||+|++++|+|+.|..+++..|++++.++++. ++|++|++.+
T Consensus        75 ~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~l  152 (387)
T PRK08912         75 HYARFQGLDLDPETEVMVTSGATEALAAALLALV-EPGDEVVLFQPLYDAYLPLIRRAGGVPRLVRLEP-PHWRLPRAAL  152 (387)
T ss_pred             HHHHHhCCCCCCcccEEEeCCcHHHHHHHHHHhc-CCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCc-ccCcCCHHHH
Confidence            9998889888998 99999999999999999998 8999999999999999999999999999999864 3689999999


Q ss_pred             HHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCC
Q 009517          258 KKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE  337 (533)
Q Consensus       258 ~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~  337 (533)
                      ++.+.+      ++++|++++||||||.++|.+++++|+++|++|+++||+||+|.++.|++. ++.++..+ .++    
T Consensus       153 ~~~~~~------~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~-~~~----  220 (387)
T PRK08912        153 AAAFSP------RTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGR-RHIPLMTL-PGM----  220 (387)
T ss_pred             HHHhCc------cceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCC-CCcChhhC-CCc----
Confidence            998876      789999999999999999999999999999999999999999999988652 33443332 111    


Q ss_pred             CCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHH
Q 009517          338 KDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERD  416 (533)
Q Consensus       338 ~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~  416 (533)
                       ..++|+++||||.| |++|+|+||+++   ++++++.+..... ..++.++..|.++..+|...          .++++
T Consensus       221 -~~~~i~~~S~SK~~-g~~GlRiG~~~~---~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~----------~~~~~  285 (387)
T PRK08912        221 -RERTVKIGSAGKIF-SLTGWKVGFVCA---APPLLRVLAKAHQFLTFTTPPNLQAAVAYGLGKP----------DDYFE  285 (387)
T ss_pred             -cCceEEEeechhhc-cCcCceeEEEec---CHHHHHHHHHHHhhccccCChHHHHHHHHHHhCC----------HHHHH
Confidence             23689999999999 899999999998   9999999877765 44677777888887777421          23456


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCC-
Q 009517          417 GILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ-  495 (533)
Q Consensus       417 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~-  495 (533)
                      ++++.++++++.+.+.|++. |+.+.+++|+||+|++++...         ...++..++..+++++||.+.||..|+. 
T Consensus       286 ~~~~~~~~~~~~l~~~L~~~-g~~~~~~~g~~~l~~~l~~~~---------~~~~~~~~~~~l~~~~gV~v~pg~~f~~~  355 (387)
T PRK08912        286 GMRADLARSRDRLAAGLRRI-GFPVLPSQGTYFLTVDLAPLG---------LAEDDVAFCRRLVEEAGVAAIPVSAFYEE  355 (387)
T ss_pred             HHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEecccccC---------CCCCHHHHHHHHHhcCCEEEecchhhCCC
Confidence            78888999999999999998 899899999999997664200         0013556677777889999999999953 


Q ss_pred             CCCCceEEEEecCCcCcHHHHHHHHHHHHHH
Q 009517          496 VPGTWHFRCTILPQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       496 ~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~  526 (533)
                      ..+.++|||+++.+++++++++++|++++++
T Consensus       356 ~~~~~~iRl~~~~~~~~l~~~l~rl~~~l~~  386 (387)
T PRK08912        356 DPVTSVVRFCFAKRDATLDEAVERLAAARRR  386 (387)
T ss_pred             CCCCCEEEEEEeCCHHHHHHHHHHHHHHHhc
Confidence            2345699999997788999999999987753

>PRK08361 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.2e-49  Score=410.21  Aligned_cols=355  Identities=22%  Similarity=0.348  Sum_probs=300.2

Q ss_pred             eeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHH
Q 009517           99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA  178 (533)
Q Consensus        99 ~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~  178 (533)
                      +|+|+.|.|+.                      +.       |+.+.+++.+.+..    ....|.+..|.++||+++|+
T Consensus        35 ~i~l~~~~~~~----------------------~~-------~~~~~~~~~~~~~~----~~~~Y~~~~g~~~lr~~ia~   81 (391)
T PRK08361         35 VISLGIGEPDF----------------------DT-------PKNIKEAAKRALDE----GWTHYTPNAGIPELREAIAE   81 (391)
T ss_pred             eEEcCCCCCCC----------------------CC-------CHHHHHHHHHHHhc----CCCCCCCCCCcHHHHHHHHH
Confidence            89999999885                      21       56677777766654    24579999999999999999


Q ss_pred             HHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHH
Q 009517          179 GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVK  258 (533)
Q Consensus       179 ~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~  258 (533)
                      ++++.+|..+++++|++|+|+++++..++..++ ++||+|++++|+|..+...+...|++++.++++.+++|.+|+++++
T Consensus        82 ~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-~~g~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~  160 (391)
T PRK08361         82 YYKKFYGVDVDVDNVIVTAGAYEATYLAFESLL-EEGDEVIIPDPAFVCYVEDAKIAEAKPIRIPLREENEFQPDPDELL  160 (391)
T ss_pred             HHHHHhCCCCCcccEEEeCChHHHHHHHHHHhc-CCCCEEEEcCCCCcccHHHHHHcCCEEEEEecCCccCCCCCHHHHH
Confidence            999888888999999999999999999999998 8999999999999999999999999999999987778899999999


Q ss_pred             HHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCC
Q 009517          259 KQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEK  338 (533)
Q Consensus       259 ~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (533)
                      +.+++      ++++|++++||||||.+++.+++++|+++|+++++++|+||+|.++.|++. ...++..+       ++
T Consensus       161 ~~i~~------~~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~-------~~  226 (391)
T PRK08361        161 ELITK------RTRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGA-KHYPMIKY-------AP  226 (391)
T ss_pred             Hhccc------ccEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCC-CCCCHhhc-------CC
Confidence            99976      789999999999999999999999999999999999999999999888543 23343332       22


Q ss_pred             CceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHH
Q 009517          339 DISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDG  417 (533)
Q Consensus       339 ~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~  417 (533)
                      + ++|++.||||++ |++|+|+||+++   ++++++.+.+... ..++.+.+.|.++..+|.++.        +.+++++
T Consensus       227 ~-~~i~~~s~SK~~-~~~GlRiG~~~~---~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~--------~~~~~~~  293 (391)
T PRK08361        227 D-NTILANSFSKTF-AMTGWRLGFVIA---PEQVIKDMIKLHAYIIGNVASFVQIAGIEALRSKE--------SWKAVEE  293 (391)
T ss_pred             C-CEEEEecCchhc-CCcHhhhhhhcc---CHHHHHHHHHHHhhhccCCChHHHHHHHHHhcCCc--------ccHHHHH
Confidence            2 579999999999 889999999998   8999998877664 457788899999999987543        1245677


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCC
Q 009517          418 ILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVP  497 (533)
Q Consensus       418 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~  497 (533)
                      +++.++++++.+.+.|++++|+.+..|+||||+|++++..          +. ++..++..+++++||.+.||..|+. .
T Consensus       294 ~~~~~~~~~~~~~~~L~~~~~~~~~~p~g~~~~~~~l~~~----------~~-~~~~l~~~l~~~~gv~v~pg~~f~~-~  361 (391)
T PRK08361        294 MRKEYNERRKLVLKRLKEMPHIKVFEPKGAFYVFANIDET----------GM-SSEDFAEWLLEKARVVVIPGTAFGK-A  361 (391)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCeecCCCEEEEEEEECCCC----------CC-CHHHHHHHHHHhCCEEEcCchhhCC-C
Confidence            8889999999999999998889999999999999776511          11 2455666777778999999999973 4


Q ss_pred             CCceEEEEecCCcCcHHHHHHHHHHHHHH
Q 009517          498 GTWHFRCTILPQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       498 g~~~iRis~~~~~e~i~~~~~~l~~~l~~  526 (533)
                      +.++|||+++.+++++++++++|++++++
T Consensus       362 ~~~~iRi~~~~~~~~l~~al~~l~~~l~~  390 (391)
T PRK08361        362 GEGYIRISYATSKEKLIEAMERMEKALEE  390 (391)
T ss_pred             CCCEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence            45699999997788999999999988764

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=100.00  E-value=5.7e-49  Score=408.08  Aligned_cols=348  Identities=21%  Similarity=0.360  Sum_probs=288.3

Q ss_pred             ccccCCCcccHHHHHHHHHHHHhhcCC--CCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHH-HhC
Q 009517          160 TGAYSHSQGIKGLRDTIAAGIEARDGF--PADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA-LHG  236 (533)
Q Consensus       160 ~~~Y~~~~G~~~lr~aia~~~~~~~g~--~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~-~~g  236 (533)
                      ...|.+..|.++||+++|+++++++|.  ++++++|++|+|+++++.+++.+++ +|||.|+++.|+|++|...+. ..|
T Consensus        88 ~~~y~~~~G~~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~~l~-~pGD~Vlv~~P~Y~~f~~~~~~~~g  166 (447)
T PLN02607         88 NALFQDYHGLKSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTFILA-DPGDALLVPTPYYPGFDRDLRWRTG  166 (447)
T ss_pred             hhccCCCcchHHHHHHHHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHHHhC-CCCCEEEEcCCCCcchHHHHHhcCC
Confidence            455889999999999999999988773  5889999999999999999999998 899999999999999998877 479


Q ss_pred             CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEcccccccc
Q 009517          237 GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENV  316 (533)
Q Consensus       237 ~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~  316 (533)
                      +++++++++.+++|.+|++.++++++.+++.|.++|+|+++|||||||.++|++++++|+++|++||+++|+||+|..+.
T Consensus       167 ~~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~  246 (447)
T PLN02607        167 VKIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSV  246 (447)
T ss_pred             cEEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccc
Confidence            99999999877789999999999999877778899999999999999999999999999999999999999999999998


Q ss_pred             ccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhccccCChHHHHHHHH
Q 009517          317 YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASL  396 (533)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~  396 (533)
                      |++ .++.++.++..++...+...+++++.||||.| |++|+|+||+++  .+++++..+.... ...+++.+.|.++..
T Consensus       247 f~~-~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~f-g~~GlRvG~ivs--~n~~l~~~~~~~~-~~~~~s~~~q~~~~~  321 (447)
T PLN02607        247 FSA-SEFVSVAEIVEARGYKGVAERVHIVYSLSKDL-GLPGFRVGTIYS--YNDKVVTTARRMS-SFTLVSSQTQHLLAS  321 (447)
T ss_pred             cCC-CCcccHHHHHhhcCCCCCcCcEEEEEcchhcC-CCCcceEEEEEE--cCHHHHHHHHHHh-hcCCCCHHHHHHHHH
Confidence            864 35677766644331001134789999999999 899999999997  3677777776553 233568889999999


Q ss_pred             HcCCCCCCChhHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHH
Q 009517          397 VMSPPKVGDESYESYC-AERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFY  475 (533)
Q Consensus       397 ~L~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (533)
                      +|+++.        |. ++++..+++++++++.+.+.|++. |+.+.++++|+|+|++++  .. ..   ......+..+
T Consensus       322 ~L~d~~--------~~~~~l~~~r~~l~~~~~~~~~~L~~~-gi~~~~~~ag~fvw~~L~--~~-~~---~~~~~~e~~l  386 (447)
T PLN02607        322 MLSDEE--------FTENYIRTNRERLRKRYEMIVQGLRRA-GIECLKGNAGLFCWMNLS--PL-LE---TPTREGELAL  386 (447)
T ss_pred             HhCCch--------hHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCcccCCeeEEEEEEch--Hh-hc---CCCchhHHHH
Confidence            998653        22 445678889999999999999998 899999999999998764  11 00   0001123455


Q ss_pred             HHHHHHccceEEEcCCCCCCCCCCceEEEEec-CCcCcHHHHHHHHHHHHHHHHH
Q 009517          476 CRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-PQEDKIPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       476 ~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~~~~l~~~l~~~~~  529 (533)
                      +.++++++||.+.||..|+. ...+||||+++ .++++++++++||.+++++.+.
T Consensus       387 ~~~ll~~~gV~v~pG~~f~~-~~~g~fRi~fa~~~~~~l~~gl~Ri~~~l~~~~~  440 (447)
T PLN02607        387 WDSILREVKLNISPGSSCHC-SEPGWFRVCFANMSEDTLEVALKRIHRFMDRRKT  440 (447)
T ss_pred             HHHHHHhCCEEEcCccccCC-CCCCEEEEEeccCCHHHHHHHHHHHHHHHHHHHh
Confidence            66778888999999999974 44559999999 5889999999999999987764

>PRK08363 alanine aminotransferase; Validated

Probab=100.00  E-value=5.6e-49  Score=406.27  Aligned_cols=376  Identities=26%  Similarity=0.473  Sum_probs=301.0

Q ss_pred             cchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHh
Q 009517           74 GEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILD  153 (533)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~  153 (533)
                      ..+...+.+.+..+.+         +|+|+.|.|...+.                   .       +|+.+.+++.+.+.
T Consensus        16 ~~~~~~~~~~~~~~~~---------~i~l~~g~p~~~~~-------------------~-------p~~~~~~~~~~~~~   60 (398)
T PRK08363         16 RDVVLPARELEKKGIK---------VIRLNIGDPVKFDF-------------------Q-------PPEHMKEAYCRAIK   60 (398)
T ss_pred             HHHHHHHHHHHhcCCC---------eEEEeCCCCCcCCC-------------------C-------CCHHHHHHHHHHHH
Confidence            3444455544444444         99999999952110                   1       16777877777775


Q ss_pred             cCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHH
Q 009517          154 QIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA  233 (533)
Q Consensus       154 ~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~  233 (533)
                      .    ....|++..|..+||++++++++..+|+.+++++|++|+|+++|+..++.+++ ++||+|++++|+|..+...++
T Consensus        61 ~----~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~-~~gd~Vl~~~p~y~~~~~~~~  135 (398)
T PRK08363         61 E----GHNYYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEALQLIFGALL-DPGDEILIPGPSYPPYTGLVK  135 (398)
T ss_pred             c----CCCCCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhC-CCCCEEEEcCCCCcchHHHHH
Confidence            4    23579999999999999999999988988999999999999999999999998 899999999999999999999


Q ss_pred             HhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccc
Q 009517          234 LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQ  313 (533)
Q Consensus       234 ~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~  313 (533)
                      .+|.+++.++..++++|.+|++.+++++++      ++++|+++|||||||.+++.+++++|+++|+++|+++|+||+|.
T Consensus       136 ~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~------~~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~  209 (398)
T PRK08363        136 FYGGVPVEYRTIEEEGWQPDIDDIRKKITE------KTKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYD  209 (398)
T ss_pred             HcCCEEEEeccccccCCcCCHHHHHhhCCc------ceEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhh
Confidence            999999888433345788999999998876      78999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhh----hccccCChH
Q 009517          314 ENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA----SVNLCSNIS  389 (533)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~----~~~~~~~~~  389 (533)
                      ++.|++.  ..++..+       ....++|++.||||.| ++||+|+||+++. .++++++.+....    ...++++.+
T Consensus       210 ~~~~~~~--~~~~~~~-------~~~~~vi~~~SfSK~~-~~~GlRiG~~~~~-~~~~~~~~l~~~~~~~~~~~~~~s~~  278 (398)
T PRK08363        210 LMTYEGK--HVSPGSL-------TKDVPVIVMNGLSKVY-FATGWRLGYIYFV-DPEGKLAEVREAIDKLARIRLCPNTP  278 (398)
T ss_pred             hhccCCc--ccCHHHc-------CcCCcEEEEecchhcc-CCccceEEEEEEe-CcHHHHHHHHHHHHHHhcccccCChH
Confidence            9888642  3343333       2344689999999998 7899999999851 1556666554432    234678999


Q ss_pred             HHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCC
Q 009517          390 GQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKT  469 (533)
Q Consensus       390 ~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~  469 (533)
                      +|.++..+|.+.          .+++++++++++++++.+.+.|++++++.+..|+||||+|++++.-          ..
T Consensus       279 ~q~~~~~~l~~~----------~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~~~~~~l~~~----------~~  338 (398)
T PRK08363        279 AQFAAIAGLTGP----------MDYLEEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPRIEEG----------PW  338 (398)
T ss_pred             HHHHHHHHHhCC----------hHHHHHHHHHHHHHHHHHHHHHhcCCCCEecCCCeEEEEEEEeccC----------CC
Confidence            999999888532          2456677888999999999999988888888999999999765410          01


Q ss_pred             CChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHHHH
Q 009517          470 VPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       470 ~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~  527 (533)
                      .++..++.++|+++||.+.||..|+. .+.++|||+++.+++++++++++|++++++.
T Consensus       339 ~~~~~~~~~~l~~~gV~v~~g~~f~~-~~~~~iRis~~~~~~~l~~~l~~l~~~~~~~  395 (398)
T PRK08363        339 KDDKEFVLDVLHEAHVLFVHGSGFGE-YGAGHFRLVFLPPVEILEEAMDRFEEFMRER  395 (398)
T ss_pred             CCHHHHHHHHHHhCCEEEeCchhhCC-CCCCeEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence            12455566778899999999999973 4456999999988889999999999988764

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=100.00  E-value=8.9e-49  Score=403.42  Aligned_cols=356  Identities=23%  Similarity=0.365  Sum_probs=295.7

Q ss_pred             eeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHH
Q 009517           99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA  178 (533)
Q Consensus        99 ~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~  178 (533)
                      +|+|+.|.|+.                      ..       |+.+.+++.+.+..    ....|.+..|.++||+++++
T Consensus        32 ~i~l~~~~~~~----------------------~~-------~~~~~~~~~~~~~~----~~~~Y~~~~g~~~lr~~ia~   78 (391)
T PRK07309         32 ILKLTLGEPDF----------------------TT-------PDHVKEAAKRAIDA----NQSHYTGMAGLLELRQAAAD   78 (391)
T ss_pred             eEEcCCCCCCC----------------------CC-------CHHHHHHHHHHHhc----CCCCCCCCCCcHHHHHHHHH
Confidence            89999999874                      21       56677777776654    23569999999999999999


Q ss_pred             HHHhhcCCCCCC-CCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHH
Q 009517          179 GIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEV  257 (533)
Q Consensus       179 ~~~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l  257 (533)
                      ++++.+|+.+.+ ++|++|+|+++++.++++.++ ++||+|++++|+|.++..+++..|.+++.++.++ .+|.+|++.+
T Consensus        79 ~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~-~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l  156 (391)
T PRK07309         79 FVKEKYNLDYAPENEILVTIGATEALSASLTAIL-EPGDKVLLPAPAYPGYEPIVNLVGAEIVEIDTTE-NDFVLTPEML  156 (391)
T ss_pred             HHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhc-CCCCEEEEeCCCCcchHHHHHHcCCEEEEEecCC-cCCcCCHHHH
Confidence            999888987775 799999999999999999998 8999999999999999999999999999999864 4678999999


Q ss_pred             HHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCC
Q 009517          258 KKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE  337 (533)
Q Consensus       258 ~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~  337 (533)
                      ++++++.   ..++++|++++||||||.+++.+++++|+++|++||+++|+||+|.++.|++. +..++..+       .
T Consensus       157 ~~~~~~~---~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~-~~~~~~~~-------~  225 (391)
T PRK07309        157 EKAILEQ---GDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGE-PHVSIAEY-------L  225 (391)
T ss_pred             HHHhhcc---CCCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCC-CCCCHHHh-------c
Confidence            9998752   12589999999999999999999999999999999999999999999998653 34444433       2


Q ss_pred             CCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHH
Q 009517          338 KDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERD  416 (533)
Q Consensus       338 ~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~  416 (533)
                      + .++|++.||||.+ |+||+|+||+++   ++++++.+..... ...+++.+.|.++..+|++..          .+..
T Consensus       226 ~-~~~i~~~S~SK~~-g~~GlRvG~~v~---~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~----------~~~~  290 (391)
T PRK07309        226 P-DQTILINGLSKSH-AMTGWRIGLIFA---PAEFTAQLIKSHQYLVTAATTMAQFAAVEALTNGK----------DDAL  290 (391)
T ss_pred             c-CCEEEEecChhhc-cCccceeEEEEe---CHHHHHHHHHHHhhcccCCChHHHHHHHHHHhCCh----------hHHH
Confidence            2 3689999999999 899999999998   9999999887654 456788999999999987532          1234


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCC
Q 009517          417 GILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQV  496 (533)
Q Consensus       417 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~  496 (533)
                      .+++.++++++.+.+.|++. |+.+..|+||+|+|++++  .+.        ..++..++.++++++||.+.||..|+ .
T Consensus       291 ~~~~~~~~~~~~~~~~l~~~-~~~~~~p~gg~~~~~~l~--~~~--------~~~~~~~~~~l~~~~gv~v~pg~~f~-~  358 (391)
T PRK07309        291 PMKKEYIKRRDYIIEKMTDL-GFKIIKPDGAFYIFAKIP--AGY--------NQDSFKFLQDFARKKAVAFIPGAAFG-P  358 (391)
T ss_pred             HHHHHHHHHHHHHHHHHHHC-CCeecCCCeeEEEEEECC--CCC--------CCCHHHHHHHHHHhCCEEEeCchhhC-C
Confidence            56778899999999999998 899999999999997654  210        01345566677888999999999997 4


Q ss_pred             CCCceEEEEecCCcCcHHHHHHHHHHHHHHH
Q 009517          497 PGTWHFRCTILPQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       497 ~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~  527 (533)
                      .+.++|||+++.+.+++++++++|+++++++
T Consensus       359 ~~~~~iRi~~~~~~~~l~~~i~~l~~~~~~~  389 (391)
T PRK07309        359 YGEGYVRLSYAASMETIKEAMKRLKEYMEEH  389 (391)
T ss_pred             CCCCEEEEEecCCHHHHHHHHHHHHHHHHhh
Confidence            4566999999877789999999999988664

>PRK12414 putative aminotransferase; Provisional

Probab=100.00  E-value=5.7e-49  Score=403.87  Aligned_cols=349  Identities=21%  Similarity=0.327  Sum_probs=291.5

Q ss_pred             eeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHH
Q 009517           99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA  178 (533)
Q Consensus        99 ~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~  178 (533)
                      +|+|+.|.|..                      +.       ++.+.+++.+.+..    ....|++..|.++||+++++
T Consensus        31 ~i~l~~g~p~~----------------------~~-------~~~~~~~~~~~~~~----~~~~Y~~~~G~~~lr~~ia~   77 (384)
T PRK12414         31 ALNLSQGAPNF----------------------AP-------DPALVEGVARAMRD----GHNQYAPMAGIAALREALAE   77 (384)
T ss_pred             eEEcCCCCCCC----------------------CC-------CHHHHHHHHHHHHh----CCCCcCCCCCcHHHHHHHHH
Confidence            89999999874                      21       56777777766654    24679999999999999999


Q ss_pred             HHHhhcCCCCCC-CCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHH
Q 009517          179 GIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEV  257 (533)
Q Consensus       179 ~~~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l  257 (533)
                      ++.+.+|.++++ ++|++|+|+++++..+++.++ ++||+|++++|+|..|...++.+|++++.++++++ +|.+|++.+
T Consensus        78 ~l~~~~g~~~~~~~~i~it~g~~~al~~~~~~l~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~-~~~~d~~~l  155 (384)
T PRK12414         78 KTERLYGARYDPASEVTVIASASEGLYAAISALV-HPGDEVIYFEPSFDSYAPIVRLQGATPVAIKLSPE-DFRVNWDEV  155 (384)
T ss_pred             HHHHHhCCCCCCCCcEEEECChHHHHHHHHHHhc-CCCCEEEEeCCCccchHHHHHHcCCEEEEEecCcc-ccccCHHHH
Confidence            999988987765 689999999999999999998 89999999999999999999999999999998753 688999999


Q ss_pred             HHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCC
Q 009517          258 KKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE  337 (533)
Q Consensus       258 ~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~  337 (533)
                      ++++++      ++++|++++||||||.++|.+++++|+++|++||+++|+||+|..+.|++. +..++..+ ..     
T Consensus       156 ~~~l~~------~~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~-~~~~~~~~-~~-----  222 (384)
T PRK12414        156 AAAITP------RTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGA-RHHSMARH-RE-----  222 (384)
T ss_pred             HhhcCc------ccEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCC-CccCcccC-cC-----
Confidence            999875      799999999999999999999999999999999999999999999988653 23333222 11     


Q ss_pred             CCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHH
Q 009517          338 KDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERD  416 (533)
Q Consensus       338 ~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~  416 (533)
                      -..++|++.||||.| |+||+|+||+++   ++++++.+.+... ..++++.+.|.++..+|.++.        +   ..
T Consensus       223 ~~~~~i~~~SfSK~~-~~pGlRiG~~v~---~~~l~~~l~~~~~~~~~~~s~~~q~a~~~~l~~~~--------~---~~  287 (384)
T PRK12414        223 LAERSVIVSSFGKSY-HVTGWRVGYCLA---PAELMDEIRKVHQFMVFSADTPMQHAFAEALAEPA--------S---YL  287 (384)
T ss_pred             ccCcEEEEecccccc-cCccceEEEEec---CHHHHHHHHHHHhheecCCCcHHHHHHHHHhcCCh--------H---HH
Confidence            123689999999999 899999999998   9999999988765 567889999999999997542        1   12


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCC-CHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCC
Q 009517          417 GILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQL-PEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ  495 (533)
Q Consensus       417 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~  495 (533)
                      .+++.|+++++.+.+.|++. |+.+.+++||||+|++++. +.           ..+..++.++++++||.+.||..|+.
T Consensus       288 ~~~~~~~~~r~~l~~~L~~~-g~~~~~~~gg~~~~~~~~~~~~-----------~~~~~~~~~~l~~~gV~v~pg~~f~~  355 (384)
T PRK12414        288 GLGAFYQRKRDLLARELAGS-RFELLPSEGSFFMLARFRHFSD-----------ESDSDFVLRLIRDARVATIPLSAFYT  355 (384)
T ss_pred             HHHHHHHHHHHHHHHHHHhC-CCeecCCCcceEEEEcccccCC-----------CCHHHHHHHHHHhCCEEEecchhhcC
Confidence            46778999999999999998 8999999999999976641 11           12455666788889999999999963


Q ss_pred             C-CCCceEEEEecCCcCcHHHHHHHHHH
Q 009517          496 V-PGTWHFRCTILPQEDKIPAIVTRLTD  522 (533)
Q Consensus       496 ~-~g~~~iRis~~~~~e~i~~~~~~l~~  522 (533)
                      . .+.++|||+++.+++++++++++|.+
T Consensus       356 ~~~~~~~iRis~~~~~~~~~~~~~rl~~  383 (384)
T PRK12414        356 DGTDTGLIRLSFSKDDATLVEGARRLCS  383 (384)
T ss_pred             CCCCCCEEEEEecCCHHHHHHHHHHHhh
Confidence            2 22469999999888899999999864

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=100.00  E-value=3.9e-49  Score=408.51  Aligned_cols=380  Identities=24%  Similarity=0.333  Sum_probs=296.2

Q ss_pred             CcCcccccCcc-ccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccC
Q 009517           60 SLNPKVLKCEY-AVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQG  138 (533)
Q Consensus        60 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~  138 (533)
                      .+|..+..+.. +.+..+..+.++...... +      +++++|+.|+|++                      +.     
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~i~l~~~~~~~----------------------~~-----   48 (409)
T PRK07590          3 KINENYLKLKAGYLFPEIARRVNAFREANP-E------AKIIRLGIGDVTQ----------------------PL-----   48 (409)
T ss_pred             ccccccCccCCcchHHHHHHHHHHHhhhcC-C------CceEEecCcCCCC----------------------CC-----
Confidence            34555555553 445566666666655321 1      2399999999885                      22     


Q ss_pred             CCCHHHHHHHHHHHhcCCC-CCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCe
Q 009517          139 LFSADSIERAWQILDQIPG-RATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDG  217 (533)
Q Consensus       139 ~~p~~v~~~~~~~~~~~~~-~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~  217 (533)
                        |+.+.+++.+.+..... .....|++..|.++||+++|+++.+.+|..+++++|++|+|+++++..++ .++ ++||+
T Consensus        49 --~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~l~-~~~-~~gd~  124 (409)
T PRK07590         49 --PPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDYQARGCDISADEIFISDGAKCDTGNIL-DIF-GPDNT  124 (409)
T ss_pred             --CHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHHhcCCcCChhhEEECCCHHHHHHHHH-Hhc-CCCCE
Confidence              57777777777664210 12568999999999999999999888899999999999999999999875 455 79999


Q ss_pred             EEEcCCcCcchHHHHHHhCCe-----------EEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccC
Q 009517          218 ILCPIPQYPLYSASIALHGGT-----------LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV  286 (533)
Q Consensus       218 Vlv~~p~~~~~~~~~~~~g~~-----------~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~  286 (533)
                      |++++|+|+.|...++..|.+           ++.++++.+++|.+|++.      .      ++++|++++||||||.+
T Consensus       125 V~v~~P~Y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~------~------~~k~i~l~nP~NPTG~~  192 (409)
T PRK07590        125 IAVTDPVYPVYVDTNVMAGRTGEANEDGRYSGIVYLPCTAENNFVPELPE------E------KVDIIYLCFPNNPTGTV  192 (409)
T ss_pred             EEEeCCCCcchHHHHHHcCCcccccccccccceeEeecccccCCcccCcc------c------CceEEEEeCCCCCcCCc
Confidence            999999999999999999987           899998766667666432      2      78999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEe
Q 009517          287 LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVT  366 (533)
Q Consensus       287 ~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~  366 (533)
                      +|.+++++|+++|++||++||+||+|.+|.+++. ...++..+ .     ....++|+++||||++ |+||+|+||+++ 
T Consensus       193 ~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~-~~~~~~~~-~-----~~~~~vi~~~SfSK~~-~~pGlRiG~~i~-  263 (409)
T PRK07590        193 LTKEQLKAWVDYAKENGSLILFDAAYEAFISDPS-LPHSIYEI-E-----GARECAIEFRSFSKTA-GFTGTRCAYTVV-  263 (409)
T ss_pred             CCHHHHHHHHHHHHHcCeEEEEEccchhhccCCC-CCcchhhC-C-----CcccceEEEecCcccc-CCcCceeEEEEc-
Confidence            9999999999999999999999999999888653 22333332 1     1123689999999999 899999999998 


Q ss_pred             cCCHHHHHHH------------HHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009517          367 GFSAEVREQI------------YKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAF  433 (533)
Q Consensus       367 ~~~~~~~~~l------------~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L  433 (533)
                        ++++++.+            ..... ...+++.+.|.++..++.+..         .++++++++.++++++.+.+.|
T Consensus       264 --~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~---------~~~~~~~~~~~~~~r~~l~~~L  332 (409)
T PRK07590        264 --PKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEG---------KAQIKELIDYYMENAKIIREGL  332 (409)
T ss_pred             --CHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCc---------HHHHHHHHHHHHHHHHHHHHHH
Confidence              88888622            11122 224578899999988886321         2456778889999999999999


Q ss_pred             hcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcH
Q 009517          434 NSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKI  513 (533)
Q Consensus       434 ~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i  513 (533)
                      ++. |+.+..|+||+|+|++++..           . ++..++..+++++||.+.||..|+ ..+.++|||++..+++++
T Consensus       333 ~~~-~~~~~~~~g~~f~wi~~~~~-----------~-~~~~~~~~l~~~~gv~v~pg~~f~-~~~~~~iRi~~~~~~~~l  398 (409)
T PRK07590        333 ESA-GFEVYGGVNAPYIWVKTPDG-----------M-SSWDFFDKLLQEANVVGTPGSGFG-PSGEGYFRLSAFGSRENV  398 (409)
T ss_pred             Hhc-CCceecCCcceEEEEECCCC-----------C-CHHHHHHHHHHHCCEEEeChhHhC-CCCCCEEEEEccCCHHHH
Confidence            998 88888899999999876521           1 234566677778899999999997 445569999987788899


Q ss_pred             HHHHHHHHHH
Q 009517          514 PAIVTRLTDF  523 (533)
Q Consensus       514 ~~~~~~l~~~  523 (533)
                      ++++++|.++
T Consensus       399 ~~~l~rl~~~  408 (409)
T PRK07590        399 LEAMERIKKA  408 (409)
T ss_pred             HHHHHHHHhh
Confidence            9999999875

>PRK06290 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.4e-48  Score=402.62  Aligned_cols=356  Identities=21%  Similarity=0.314  Sum_probs=292.7

Q ss_pred             ceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHH
Q 009517           98 EILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA  177 (533)
Q Consensus        98 ~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia  177 (533)
                      ++|+|++|+|+.                      ..       |+.+++++.+.+...   ....|++ .|..+||+++|
T Consensus        45 ~~i~L~~g~p~~----------------------~~-------~~~~~~~l~~~~~~~---~~~~Y~~-~G~~~lr~aia   91 (410)
T PRK06290         45 ELIDMGVGEPDE----------------------MA-------DESVVEVLCEEAKKP---ENRGYAD-NGIQEFKEAAA   91 (410)
T ss_pred             CeEEcCCCCCCC----------------------CC-------CHHHHHHHHHHHhCC---CCCCCCC-CCcHHHHHHHH
Confidence            389999999875                      21       567777777665432   2456876 89999999999


Q ss_pred             HHHHhhcCCC-CCCC-CEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHH
Q 009517          178 AGIEARDGFP-ADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETS  255 (533)
Q Consensus       178 ~~~~~~~g~~-~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~  255 (533)
                      +++.+++|++ ++++ +|++|+|+++++..++++++ ++||+|+++.|+|+.|...++..|++++.++++++++|.+|++
T Consensus        92 ~~~~~~~g~~~~~~~~~I~it~Gs~~al~~~~~~~~-~~gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~  170 (410)
T PRK06290         92 RYMEKVFGVKDIDPVTEVIHSIGSKPALAMLPSCFI-NPGDVTLMTVPGYPVTGTHTKYYGGEVYNLPLLEENNFLPDLD  170 (410)
T ss_pred             HHHHHHcCCCcCCCcceEEEccCHHHHHHHHHHHhC-CCCCEEEEeCCCCccHHHHHHHcCCEEEEEecCCCcCCcCCHH
Confidence            9999988988 8886 79999999999999999998 8999999999999999999999999999999998778889999


Q ss_pred             HHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCC
Q 009517          256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY  335 (533)
Q Consensus       256 ~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~  335 (533)
                      .+++++.+      ++++|++++||||||.++|.+++++|+++|++||++||+||+|.++.|++.  ..++..+.     
T Consensus       171 ~l~~~~~~------~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~--~~s~~~~~-----  237 (410)
T PRK06290        171 SIPKDIKE------KAKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGK--PLSFLSVP-----  237 (410)
T ss_pred             HHHHhhcc------cceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCC--CcChhcCC-----
Confidence            99998876      789999999999999999999999999999999999999999999988542  23433321     


Q ss_pred             CCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHH
Q 009517          336 GEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAE  414 (533)
Q Consensus       336 ~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~  414 (533)
                       +...++|+++||||.+ |+||+|+||+++   ++++++.+..... ...+++.+.|.++..+|.++           ++
T Consensus       238 -~~~~~~I~i~SfSK~~-g~~GlRiG~ii~---~~~l~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~-----------~~  301 (410)
T PRK06290        238 -GAKEVGVEIHSLSKAY-NMTGWRLAFVVG---NELIVKAFATVKDNNDSGQFIAIQKAGIYALDHP-----------EI  301 (410)
T ss_pred             -CccccEEEEeechhhc-CCchhheEeEEe---CHHHHHHHHHHHhccccCCcHHHHHHHHHHhhCc-----------HH
Confidence             1123579999999999 899999999998   9999999887765 45666778999999888642           33


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCC
Q 009517          415 RDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFG  494 (533)
Q Consensus       415 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~  494 (533)
                      ++++++.++++++.+.+.|++. |+.+.+|+||||+|++++  .....   ..+..++..++..++++.+|.+.||..|+
T Consensus       302 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~~p~g~f~l~v~lp--~~~~~---~~~~~~~~~~~~~Ll~~~~v~~~p~~~~~  375 (410)
T PRK06290        302 TEKIREKYSRRLDKLVKILNEV-GFKAEMPGGTFYLYVKAP--KGTKS---GIKFENAEEFSQYLIKEKLISTVPWDDAG  375 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhC-CCeecCCCeeeEEEEECC--Ccccc---CCCCCCHHHHHHHHHHhCCEEEECCcccc
Confidence            5678888999999999999998 899899999999997654  11000   00001356677788887788889988775


Q ss_pred             CCCCCceEEEEec---CCcCcHHHHHHHHHHHHHHH
Q 009517          495 QVPGTWHFRCTIL---PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       495 ~~~g~~~iRis~~---~~~e~i~~~~~~l~~~l~~~  527 (533)
                           +++||+++   .++++.++++++|++.|.++
T Consensus       376 -----~~lRi~~~~~~~~~~~~~~~~~~l~~~~~~~  406 (410)
T PRK06290        376 -----HFLRFSVTFEAKDEEEEDRILEEIKRRLSDV  406 (410)
T ss_pred             -----CeEEEEEEcccccccchhHHHHHHHHHHhhc
Confidence                 29999997   57777899999998888765

>PRK07683 aminotransferase A; Validated

Probab=100.00  E-value=7.8e-49  Score=403.29  Aligned_cols=353  Identities=24%  Similarity=0.388  Sum_probs=296.6

Q ss_pred             eeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHH
Q 009517           99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA  178 (533)
Q Consensus        99 ~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~  178 (533)
                      +|+|++|.|..                      +.       ++.+.+++.+.+..    ....|++..|..+||+++|+
T Consensus        30 ~i~l~~~~p~~----------------------~~-------~~~~~~a~~~~~~~----~~~~Y~~~~g~~~lr~~ia~   76 (387)
T PRK07683         30 LISLTIGQPDF----------------------PT-------PSHVKEAAKRAITE----NYTSYTHNAGLLELRKAACN   76 (387)
T ss_pred             eEEecCCCCCC----------------------CC-------CHHHHHHHHHHHhc----CCCCCCCCCCCHHHHHHHHH
Confidence            89999999874                      11       56777777777764    25689999999999999999


Q ss_pred             HHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHH
Q 009517          179 GIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEV  257 (533)
Q Consensus       179 ~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l  257 (533)
                      ++++.+|+.++++ +|++|+|+++|+..+++.++ ++||+|++++|+|.+|..+++..|++++.++.+. ++|.+|.+.+
T Consensus        77 ~l~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~-~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~l  154 (387)
T PRK07683         77 FVKDKYDLHYSPESEIIVTIGASEAIDIAFRTIL-EPGTEVILPAPIYPGYEPIIRLCGAKPVFIDTRS-TGFRLTAEAL  154 (387)
T ss_pred             HHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhC-CCCCEEEEcCCCccchHHHHHHcCCEEEEeecCc-ccCCCCHHHH
Confidence            9998889888898 99999999999999999998 7999999999999999999999999999999875 4788899999


Q ss_pred             HHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCC
Q 009517          258 KKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE  337 (533)
Q Consensus       258 ~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~  337 (533)
                      ++.+++      ++++|++++||||||.+++.+++++|+++|+++|++||+||+|.++.|++.  ..++.++.      +
T Consensus       155 ~~~~~~------~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~~------~  220 (387)
T PRK07683        155 ENAITE------KTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQP--HTSIAHFP------E  220 (387)
T ss_pred             HHhcCc------CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCC--cCChhhcc------C
Confidence            998876      789999999999999999999999999999999999999999999888542  33433321      1


Q ss_pred             CCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHH
Q 009517          338 KDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERD  416 (533)
Q Consensus       338 ~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~  416 (533)
                      ...++|+++||||.+ |+||+|+||+++   ++++++.+.+... ...+++.++|.++..+|.++.          .+++
T Consensus       221 ~~~~vi~~~s~SK~~-~~pGlRiG~i~~---~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~----------~~~~  286 (387)
T PRK07683        221 MREKTIVINGLSKSH-SMTGWRIGFLFA---PSYLAKHILKVHQYNVTCASSISQYAALEALTAGK----------DDAK  286 (387)
T ss_pred             CcCCeEEEeeccccc-cCccceeEEEEc---CHHHHHHHHHHHHhccCCCChHHHHHHHHHHhCCh----------HHHH
Confidence            223689999999999 899999999998   9999999887654 345677889999998886432          3456


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCC
Q 009517          417 GILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQV  496 (533)
Q Consensus       417 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~  496 (533)
                      +++++++++++.+.+.|++. |+.+..|+||+|+|+.++..           ..++..++.++++++||.+.||+.|+ .
T Consensus       287 ~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~ll~~~gI~v~pg~~f~-~  353 (387)
T PRK07683        287 MMRHQYKKRRDYVYNRLISM-GLDVEKPTGAFYLFPSIGHF-----------TMSSFDFALDLVEEAGLAVVPGSAFS-E  353 (387)
T ss_pred             HHHHHHHHHHHHHHHHHHHc-CCcccCCCeeEEEEEecccC-----------CCCHHHHHHHHHHhCCEEEcCchhhC-C
Confidence            77888999999999999987 88889999999999755410           01245566677888999999999997 3


Q ss_pred             CCCceEEEEecCCcCcHHHHHHHHHHHHHHH
Q 009517          497 PGTWHFRCTILPQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       497 ~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~  527 (533)
                      .+.++|||+++.+++++++++++|.+++++-
T Consensus       354 ~~~~~~Ri~~~~~~~~~~~al~~l~~~l~~~  384 (387)
T PRK07683        354 YGEGYVRLSYAYSIETLKEGLDRLEAFLQQK  384 (387)
T ss_pred             CCCCeEEEEecCCHHHHHHHHHHHHHHHHhh
Confidence            4456999999988889999999999987653

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=100.00  E-value=7.6e-49  Score=411.49  Aligned_cols=348  Identities=20%  Similarity=0.311  Sum_probs=283.5

Q ss_pred             ccccCCCcccHHHHHHHHHHHHhhcC--CCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHH-HhC
Q 009517          160 TGAYSHSQGIKGLRDTIAAGIEARDG--FPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA-LHG  236 (533)
Q Consensus       160 ~~~Y~~~~G~~~lr~aia~~~~~~~g--~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~-~~g  236 (533)
                      ...|++..|.++||+++|+++++.+|  +++++++|++|+|+++++..++.+++ +|||.|++++|+|+.|...+. ..|
T Consensus        87 ~~~y~~~~G~~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l~-~pGD~Vlv~~P~Y~~~~~~~~~~~G  165 (496)
T PLN02376         87 IANFQDYHGLKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLA-DPGDVFLIPSPYYAAFDRDLRWRTG  165 (496)
T ss_pred             hhccCCCCCcHHHHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHhC-CCCCEEEECCCCccchHHHHHhhCC
Confidence            45689999999999999999998888  66899999999999999999999998 899999999999999998887 589


Q ss_pred             CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEcccccccc
Q 009517          237 GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENV  316 (533)
Q Consensus       237 ~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~  316 (533)
                      +++++++++.+++|++|++.++++++.+...+.++|+|+++|||||||.++|.+++++|+++|++||++||+||+|.++.
T Consensus       166 ~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~  245 (496)
T PLN02376        166 VEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATV  245 (496)
T ss_pred             CEEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccc
Confidence            99999999877789999999998876544334579999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCcccHHHHHhhcCCCC-CCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhccccCChHHHHHHH
Q 009517          317 YVPEKKFHSFKKVSRSMGYGE-KDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILAS  395 (533)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~-~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~  395 (533)
                      |++. ++.++.++..+..... ....++++.||||.| |+||+|+||+++  .++.+.+.+.... .....+.+.|.++.
T Consensus       246 f~~~-~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~-glpGlRvG~li~--~~~~l~~~~~~~~-~~~~vs~~~Q~a~~  320 (496)
T PLN02376        246 FAGG-DFVSVAEVVNDVDISEVNVDLIHIVYSLSKDM-GLPGFRVGIVYS--FNDSVVSCARKMS-SFGLVSSQTQLMLA  320 (496)
T ss_pred             cCCC-CcccHHHhhccccccccCCCeEEEEEeccccC-CCCcceEEEEEE--CCHHHHHHHHHHh-hcCCCCHHHHHHHH
Confidence            8653 4667766644321000 112567799999999 899999999997  2466666655444 33457899999999


Q ss_pred             HHcCCCCCCChhHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHH
Q 009517          396 LVMSPPKVGDESYESY-CAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAF  474 (533)
Q Consensus       396 ~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (533)
                      .+|.++.        + .+++++++++++++++.+.+.|++. |+.+.+++||+|+|++++  ... ..  ......+..
T Consensus       321 ~~L~d~~--------~~~~~l~~~r~~l~~r~~~l~~~L~~~-gi~~~~~~aG~flwi~l~--~~~-~~--~~~~~~e~~  386 (496)
T PLN02376        321 SMLSDDQ--------FVDNFLMESSRRLGIRHKVFTTGIKKA-DIACLTSNAGLFAWMDLR--HLL-RD--RNSFESEIE  386 (496)
T ss_pred             HHhCChh--------HHHHHHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCceEEEEEEch--hhh-cc--CCchhHHHH
Confidence            9997542        3 3456778889999999999999987 899999999999997764  110 00  000112356


Q ss_pred             HHHHHHHccceEEEcCCCCCCCCCCceEEEEec-CCcCcHHHHHHHHHHHHHHHH
Q 009517          475 YCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-PQEDKIPAIVTRLTDFHKNFM  528 (533)
Q Consensus       475 ~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~~~~l~~~l~~~~  528 (533)
                      ++..++++.||.+.||+.|+. .+.++|||+++ .+++++++++++|++++.+.+
T Consensus       387 l~~~ll~~~gV~v~pGs~F~~-~~~g~~Ri~fa~~~~~~l~~al~rl~~~l~~~~  440 (496)
T PLN02376        387 LWHIIIDKVKLNVSPGSSFRC-TEPGWFRICFANMDDDTLHVALGRIQDFVSKNK  440 (496)
T ss_pred             HHHHHHHcCCEEEeCccccCC-CCCCEEEEEeeCCCHHHHHHHHHHHHHHHHHhh
Confidence            677788888999999999973 34569999998 688999999999999997544

>PRK05957 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.6e-48  Score=401.31  Aligned_cols=356  Identities=23%  Similarity=0.331  Sum_probs=296.2

Q ss_pred             eeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHH
Q 009517           99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA  178 (533)
Q Consensus        99 ~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~  178 (533)
                      +++|+.|.|+.                      +.       |+.+.+++.+.+...   ....|.+..|.+++|+++++
T Consensus        29 ~~~l~~g~~~~----------------------~~-------~~~~~~a~~~~~~~~---~~~~Y~~~~G~~~lr~~~~~   76 (389)
T PRK05957         29 TISLGQGVVSY----------------------PP-------PPEAIEALNNFLANP---ENHKYQAVQGIPPLLEAITQ   76 (389)
T ss_pred             eEEccCCCCCC----------------------CC-------CHHHHHHHHHHHhCC---CCCCCCCCCCCHHHHHHHHH
Confidence            89999999874                      21       677888777766532   24579999999999999999


Q ss_pred             HHHhhcCCCCC-CCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHH
Q 009517          179 GIEARDGFPAD-PNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEV  257 (533)
Q Consensus       179 ~~~~~~g~~~~-~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l  257 (533)
                      ++.+.+|..++ +++|++|+|+++++..++..++ ++||+|++++|+|..+...++..|++++.++.+  .+|++|++++
T Consensus        77 ~l~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~-~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l  153 (389)
T PRK05957         77 KLQQDNGIELNNEQAIVVTAGSNMAFMNAILAIT-DPGDEIILNTPYYFNHEMAITMAGCQPILVPTD--DNYQLQPEAI  153 (389)
T ss_pred             HHHHHhCCCCCCCCeEEEeCChHHHHHHHHHHhc-CCCCEEEEeCCCCcCHHHHHHhcCCEEEEeecC--CCCCcCHHHH
Confidence            99988897777 7799999999999999999888 899999999999999999889999999999985  3678999999


Q ss_pred             HHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCC
Q 009517          258 KKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE  337 (533)
Q Consensus       258 ~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~  337 (533)
                      ++++++      ++++|++++||||||.++|.+++++|+++|+++|+++|+||+|.++.|++. +..+...+ .     +
T Consensus       154 ~~~i~~------~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~-~~~~~~~~-~-----~  220 (389)
T PRK05957        154 EQAITP------KTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGV-KHFSPGSI-P-----G  220 (389)
T ss_pred             HHhcCc------CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCC-CccChhhC-C-----C
Confidence            999976      799999999999999999999999999999999999999999999988642 23333222 1     2


Q ss_pred             CCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHH
Q 009517          338 KDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERD  416 (533)
Q Consensus       338 ~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~  416 (533)
                      ...++|++.||||.+ |++|+|+||+++   ++++++++..... ...+++.+.|.++..+|.++.          .+++
T Consensus       221 ~~~~~i~~~S~SK~~-g~~GlRiG~~~~---~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~----------~~~~  286 (389)
T PRK05957        221 SGNHTISLYSLSKAY-GFASWRIGYMVI---PIHLLEAIKKIQDTILICPPVVSQYAALGALQVGK----------SYCQ  286 (389)
T ss_pred             ccCcEEEEecchhhc-cCccceeEEEec---CHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCCh----------HHHH
Confidence            334689999999999 899999999998   8999999988765 456778899999988886432          2345


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCc-eEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCC
Q 009517          417 GILSSLARRAKTLEDAFNSLEGI-TCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ  495 (533)
Q Consensus       417 ~~~~~~~~~~~~l~~~L~~~~g~-~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~  495 (533)
                      +.++.++++++.+.+.|++++++ .+.+|+||||+|++++..           . ++.+++.++++++||.+.||+.|+.
T Consensus       287 ~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~gg~~~~~~~~~~-----------~-~~~~~~~~l~~~~gv~v~pg~~f~~  354 (389)
T PRK05957        287 QHLPEIAQVRQILLKSLGQLQDRCTLHPANGAFYCFLKVNTD-----------L-NDFELVKQLIREYRVAVIPGTTFGM  354 (389)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCccccCCCeeEEEEEeCCCC-----------C-ChHHHHHHHHHHCCEEEccchhhCC
Confidence            55567899999999999988674 778899999999776421           1 3456677777789999999999973


Q ss_pred             CCCCceEEEEec-CCcCcHHHHHHHHHHHHHHHHH
Q 009517          496 VPGTWHFRCTIL-PQEDKIPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       496 ~~g~~~iRis~~-~~~e~i~~~~~~l~~~l~~~~~  529 (533)
                       .+.++|||+++ .+++++++++++|.+.++++.+
T Consensus       355 -~~~~~iRis~~~~~~~~l~~~~~~l~~~~~~~~~  388 (389)
T PRK05957        355 -KNGCYLRIAYGALQKATAKEGIERLVQGLKTIVQ  388 (389)
T ss_pred             -CCCCEEEEEEecCCHHHHHHHHHHHHHHHHhhhc
Confidence             33459999997 7888999999999999988654

>PRK05839 hypothetical protein; Provisional

Probab=100.00  E-value=1.3e-48  Score=399.71  Aligned_cols=367  Identities=19%  Similarity=0.251  Sum_probs=290.7

Q ss_pred             CccccccchHHHHHHHHHH-hhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHH
Q 009517           68 CEYAVRGEIVSIAQRLQQE-LQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIE  146 (533)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~  146 (533)
                      ++++++..+.+...++... |.+         +++|+.|.|.+                      +.       |+.+.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~---------~i~l~~~~p~~----------------------~~-------~~~~~~   44 (374)
T PRK05839          3 FEPYPFEKLRELLKEITPNKEYK---------GLDLTIGEPQF----------------------ET-------PKFIQD   44 (374)
T ss_pred             CCcchHHHHHHHHHHhhhcCCCC---------eEEcCCCCCCC----------------------CC-------CHHHHH
Confidence            3445565666667767665 445         99999999875                      22       566666


Q ss_pred             HHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc-CCCCeEEEcCCcC
Q 009517          147 RAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-SENDGILCPIPQY  225 (533)
Q Consensus       147 ~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~Vlv~~p~~  225 (533)
                      ++.+....     ...|++..|..+||+++|+++++++|.++++++|++|+|+++++..++..++. .+||.|+++.|+|
T Consensus        45 a~~~~~~~-----~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~~~~~~~gd~vlv~~P~y  119 (374)
T PRK05839         45 ALKNNAHL-----LNKYPKSAGEESLREAQRGFFKRRFKIELKENELIPTFGTREVLFNFPQFVLFDKQNPTIAYPNPFY  119 (374)
T ss_pred             HHHHHhhc-----cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHHhcCCCCCEEEECCCCc
Confidence            66655432     56799999999999999999999899889999999999999999999887742 3689999999999


Q ss_pred             cchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCE
Q 009517          226 PLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLV  305 (533)
Q Consensus       226 ~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~  305 (533)
                      +.|...+...|+++++++++.+++|.+|++..+  + +      ++++|+++|||||||.+++.+++++|+++|+++|++
T Consensus       120 ~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~~~--~-~------~~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~  190 (374)
T PRK05839        120 QIYEGAAIASRAKVLLMPLTKENDFTPSLNEKE--L-Q------EVDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFI  190 (374)
T ss_pred             hhhHHHHHhcCCEEEEeecccccCCcCCcchhh--h-c------cccEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCE
Confidence            999999999999999999987777888876542  2 2      689999999999999999999999999999999999


Q ss_pred             EEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccc
Q 009517          306 LLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNL  384 (533)
Q Consensus       306 lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~  384 (533)
                      ||+||+|.++.+++  +..++......... ....++|+++||||.| |+||+|+||+++   ++++++.+..... ..+
T Consensus       191 ii~DE~Y~~~~~~~--~~~s~~~~~~~~~~-~~~~~vi~~~SfSK~~-~~~GlRiG~ii~---~~~~~~~~~~~~~~~~~  263 (374)
T PRK05839        191 LINDECYSEIYENT--PPPSLLEASILVGN-ESFKNVLVINSISKRS-SAPGLRSGFIAG---DASILKKYKAYRTYLGC  263 (374)
T ss_pred             EEeccchhhcccCC--CCCCHhhhhcccCc-cccCcEEEEecccccc-CCccceeEEEec---CHHHHHHHHHHHhhcCC
Confidence            99999999976532  33443332110000 1124789999999998 899999999998   8999999887754 456


Q ss_pred             cCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHH
Q 009517          385 CSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAA  464 (533)
Q Consensus       385 ~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~  464 (533)
                      +.+.+.|.++..++.+.           ++++.++++++++++.+.+.|    ++.  .|+||+|+|++++         
T Consensus       264 ~~~~~~q~~~~~~l~~~-----------~~~~~~~~~~~~~~~~~~~~l----~~~--~p~gg~fi~~~~~---------  317 (374)
T PRK05839        264 ASPLPLQKAAAVAWLDD-----------EHAEFFRNIYAKNLKLAREIL----GIT--IPPATFYVWLPVD---------  317 (374)
T ss_pred             CCChHHHHHHHHHhccc-----------hHHHHHHHHHHHHHHHHHHhc----CCC--CCCeeEEEEEeCC---------
Confidence            78888898888777531           345667888888888887765    333  7899999997654         


Q ss_pred             HhcCCCChHHHHHHHHHccceEEEcCCCCCCC-CCCceEEEEecCCcCcHHHHHHHHHHHHH
Q 009517          465 EAEKTVPDAFYCRRLLNATGIVLVPGSGFGQV-PGTWHFRCTILPQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       465 ~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~-~g~~~iRis~~~~~e~i~~~~~~l~~~l~  525 (533)
                            ++..++.++++++||.+.||..|+.. .+.++|||+++.+++++++++++|+++++
T Consensus       318 ------~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~~~~~~~~~~~l~~l~~~l~  373 (374)
T PRK05839        318 ------NDEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIALVYDTPKLEKALEIIKTYLE  373 (374)
T ss_pred             ------ChHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEecCCHHHHHHHHHHHHHHhh
Confidence                  13456677777799999999988742 23469999998778899999999998875

>PRK07550 hypothetical protein; Provisional

Probab=100.00  E-value=1.9e-48  Score=400.79  Aligned_cols=379  Identities=23%  Similarity=0.321  Sum_probs=307.5

Q ss_pred             cccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCH
Q 009517           63 PKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSA  142 (533)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~  142 (533)
                      +++....+.++..+++.+.+..+.++.         .|+|+.|.|+.                      ..       +.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~i~l~~~~~~~----------------------~~-------~~   45 (386)
T PRK07550          4 PLIAALFPPPIPEVRAWLAGYDGADGP---------LIDLSQAVPGY----------------------PP-------PP   45 (386)
T ss_pred             hhhhhcCChHHHHHHHHHHHHhhcCCC---------eEEeCCCCCCC----------------------CC-------CH
Confidence            344445555666777777777665555         89999999874                      11       45


Q ss_pred             HHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcC
Q 009517          143 DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI  222 (533)
Q Consensus       143 ~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~  222 (533)
                      .+.+++.+.+..  . ....|++..|.++||+++++++++.+|..+++++|++|+|+++++..++.+++ ++||+|++++
T Consensus        46 ~~~~~~~~~~~~--~-~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-~~gd~Vlv~~  121 (386)
T PRK07550         46 ELLRALAEAAAD--P-AAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMVTLA-GAGDEVILPL  121 (386)
T ss_pred             HHHHHHHHHHhC--c-CCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhc-CCCCEEEEcC
Confidence            666666665542  1 35679999999999999999999989988999999999999999999999998 8999999999


Q ss_pred             CcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHc
Q 009517          223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKE  302 (533)
Q Consensus       223 p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~  302 (533)
                      |+|.++..+++..|++++.++++++.+|.+|++.+++++++      ++++|++++||||||.++|.+++++|+++|++|
T Consensus       122 p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~~------~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~  195 (386)
T PRK07550        122 PWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAAEALITP------RTRAIALVTPNNPTGVVYPPELLHELYDLARRH  195 (386)
T ss_pred             CCCcchHHHHHhcCCEEEEEecCCCcCCCCCHHHHHHHhcc------cCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHc
Confidence            99999999999999999999998766888999999999976      789999999999999999999999999999999


Q ss_pred             CCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-
Q 009517          303 GLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-  381 (533)
Q Consensus       303 ~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-  381 (533)
                      |++||+||+|.+|.+++..+ .+...   ..   +.+.++|++.||||++ |++|+|+||+++   ++++++.+..... 
T Consensus       196 ~~~iI~Dd~y~~~~~~~~~~-~~~~~---~~---~~~~~~i~~~S~SK~~-g~~G~RiG~i~~---~~~~~~~~~~~~~~  264 (386)
T PRK07550        196 GIALILDETYRDFDSGGGAP-HDLFA---DP---DWDDTLVHLYSFSKSY-ALTGHRVGAVVA---SPARIAEIEKFMDT  264 (386)
T ss_pred             CeEEEEeccchhhccCCCCC-cchhh---CC---CccccEEEEecchhhc-cCcccceEeeec---CHHHHHHHHHHHhh
Confidence            99999999999987643222 22211   10   1234689999999999 889999999998   8999988887765 


Q ss_pred             ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHH
Q 009517          382 VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAI  461 (533)
Q Consensus       382 ~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~  461 (533)
                      .+.+++.++|.++..++..          +.++++++++.++++++.+.+.|.+++++.+ .+.|++|+|++++.. +  
T Consensus       265 ~~~~~s~~~q~~~~~~l~~----------~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~g~~~~~~~~~~~-~--  330 (386)
T PRK07550        265 VAICAPRIGQIAVAWGLPN----------LADWRAGNRAEIARRRDAFRAVFARLPGWEL-LASGAYFAYVRHPFP-D--  330 (386)
T ss_pred             cccCCCcHHHHHHHHHhcc----------HHHHHHHHHHHHHHHHHHHHHHHHhCCCcee-CCCceEEEEecCCCC-C--
Confidence            5677899999999988852          2345567788899999999999988756654 477999999765420 0  


Q ss_pred             HHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec-CCcCcHHHHHHHHHHH
Q 009517          462 KAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-PQEDKIPAIVTRLTDF  523 (533)
Q Consensus       462 ~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~~~~l~~~  523 (533)
                              .++..++.++++++||.+.||..|+. .+.++|||+++ .+++++++++++|.++
T Consensus       331 --------~~~~~l~~~l~~~~gv~v~pg~~f~~-~~~~~iRis~~~~~~~~~~~~~~~l~~~  384 (386)
T PRK07550        331 --------RPSREVARRLAKEAGILCLPGTMFGP-GQEGYLRLAFANADVAGIGELVERLRAF  384 (386)
T ss_pred             --------CCHHHHHHHHHHhcCEEEeCchhhCC-CCCCEEEEEeecCCHHHHHHHHHHHHhh
Confidence                    13455666777889999999999973 34569999998 6788999999999875

>PRK07568 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.8e-48  Score=402.93  Aligned_cols=382  Identities=27%  Similarity=0.437  Sum_probs=304.1

Q ss_pred             ccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHH
Q 009517           64 KVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSAD  143 (533)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~  143 (533)
                      ++......++..+...+.+....+.+         +++|+.|.|+.                      +.       |+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~i~l~~~~~~~----------------------~~-------~~~   47 (397)
T PRK07568          6 RVLNMPASPIRKLVPYADEAKKRGIK---------VYHLNIGQPDI----------------------KT-------PEV   47 (397)
T ss_pred             HhhhCCcchHHHHHHHHHHHHhhCCC---------EEEecCCCCCC----------------------CC-------CHH
Confidence            33334444444454444433333333         89999999874                      22       566


Q ss_pred             HHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCC
Q 009517          144 SIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIP  223 (533)
Q Consensus       144 v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p  223 (533)
                      +.+++.+...     ....|++..|.++||+++++++. .+|..+++++|++|+|+++++..++..++ ++||+|++++|
T Consensus        48 ~~~a~~~~~~-----~~~~Y~~~~g~~~lr~~ia~~~~-~~~~~~~~~~i~~t~G~~~al~~~~~~l~-~~gd~Vl~~~p  120 (397)
T PRK07568         48 FFEAIKNYDE-----EVLAYSHSQGIPELREAFAKYYK-KWGIDVEPDEILITNGGSEAILFAMMAIC-DPGDEILVPEP  120 (397)
T ss_pred             HHHHHHHHhc-----CCcCcCCCCCCHHHHHHHHHHHH-HhCCCCCcceEEEcCChHHHHHHHHHHhc-CCCCEEEEecC
Confidence            7766655443     25679999999999999999998 57888899999999999999999999987 89999999999


Q ss_pred             cCcchHHHHHHhCCeEEEEecCCCCCCCC-CHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHc
Q 009517          224 QYPLYSASIALHGGTLVPYYLDEATGWGL-ETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKE  302 (533)
Q Consensus       224 ~~~~~~~~~~~~g~~~~~v~~~~~~~~~l-d~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~  302 (533)
                      +|.+|...++..|.+++.++++.+.+|.+ +++.+++++++      ++++|++++||||||.+++.+++++|+++|+++
T Consensus       121 ~y~~~~~~~~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~~~------~~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~  194 (397)
T PRK07568        121 FYANYNGFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLITP------KTKAILISNPGNPTGVVYTKEELEMLAEIAKKH  194 (397)
T ss_pred             CCccHHHHHHHcCCEEEEeecCcccCCCCCCHHHHHHhcCc------cceEEEEECCCCCCCccCCHHHHHHHHHHHHHC
Confidence            99999999999999999999975556654 68999998876      789999999999999999999999999999999


Q ss_pred             CCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhc
Q 009517          303 GLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASV  382 (533)
Q Consensus       303 ~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~  382 (533)
                      |++||+||+|.+|.|++. +..++..+.      ....++|++.||||.+ |++|+|+||+++  .++++++.+.+....
T Consensus       195 ~~~ii~De~y~~~~~~~~-~~~s~~~~~------~~~~~~i~~~S~SK~~-~~~G~R~G~~~~--~~~~~~~~~~~~~~~  264 (397)
T PRK07568        195 DLFLISDEVYREFVYDGL-KYTSALSLE------GLEDRVIIIDSVSKRY-SACGARIGCLIS--KNKELIAAAMKLCQA  264 (397)
T ss_pred             CcEEEEeccchhcccCCC-CccChhhcC------CCcCCEEEEecchhhc-cCCCcceEEEec--CCHHHHHHHHHHhhc
Confidence            999999999999988653 334443331      1134689999999999 789999999987  247888877665544


Q ss_pred             cccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHH
Q 009517          383 NLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIK  462 (533)
Q Consensus       383 ~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~  462 (533)
                      .++++.+.|.++..+|+..+          .+++++++.++++++.+.+.|++++|+.+..|+||+|+|++++.      
T Consensus       265 ~~~~s~~~q~~~~~~l~~~~----------~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~~~~~~l~~------  328 (397)
T PRK07568        265 RLSPPTLEQIGAAALLDTPE----------SYFDEVREEYKKRRDILYEELNKIPGVVCEKPKGAFYIIAKLPV------  328 (397)
T ss_pred             cCCCCcHHHHHHHHHhhCCH----------HHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCcceEEEEecCC------
Confidence            57889999999999986421          44677888899999999999999888888999999999976641      


Q ss_pred             HHHhcCCCChHHHHHHHHHc-----cceEEEcCCCCCCCC--CCceEEEEecCCcCcHHHHHHHHHHHHHHHHH
Q 009517          463 AAEAEKTVPDAFYCRRLLNA-----TGIVLVPGSGFGQVP--GTWHFRCTILPQEDKIPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       463 ~~~~~~~~~~~~~~~~ll~~-----~gV~v~pg~~f~~~~--g~~~iRis~~~~~e~i~~~~~~l~~~l~~~~~  529 (533)
                             .++..++..++++     +||.+.||..|+..+  +.++|||+++.+++++++++++|+++++++.+
T Consensus       329 -------~~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls~~~~~~~~~~~~~~l~~~l~~~~~  395 (397)
T PRK07568        329 -------DDAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIAYVLNEEDLKRAMEILKEALEKYNK  395 (397)
T ss_pred             -------CCHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHHHHHhhc
Confidence                   1245556666654     699999999995322  34699999987789999999999999987653

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=100.00  E-value=1.6e-48  Score=403.18  Aligned_cols=365  Identities=24%  Similarity=0.401  Sum_probs=296.3

Q ss_pred             eeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHH
Q 009517           99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA  178 (533)
Q Consensus        99 ~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~  178 (533)
                      +|+|++|.|...+..                  +       +++.+.+++.+.+...   ....|++..|..++|+++++
T Consensus        33 ~i~l~~g~p~~~~~~------------------~-------~~~~~~~~~~~~l~~~---~~~~Y~~~~g~~~lr~~ia~   84 (403)
T TIGR01265        33 IIPLSHGDPSVFGNL------------------R-------TDPEAEEAVKDALRSG---KFNGYAPSVGALAAREAVAE   84 (403)
T ss_pred             eEEeCCCCCCccCCC------------------C-------CCHHHHHHHHHHHhcC---CCCCCCCCCCCHHHHHHHHH
Confidence            999999999631100                  1       1677888877777542   23579999999999999999


Q ss_pred             HHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHH
Q 009517          179 GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVK  258 (533)
Q Consensus       179 ~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~  258 (533)
                      +++..++.++++++|++|+|+++++.++++++. .+||+|++++|+|..+...+...|.+++.++++.+++|++|++.++
T Consensus        85 ~l~~~~~~~~~~~~ii~t~G~t~al~~~~~~l~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~  163 (403)
T TIGR01265        85 YLSSDLPGKLTADDVVLTSGCSQAIEICIEALA-NPGANILVPRPGFPLYDTRAAFSGLEVRLYDLLPEKDWEIDLDGLE  163 (403)
T ss_pred             HHHhhcCCCCCHHHEEEecChHHHHHHHHHHhC-CCCCEEEEeCCCchhHHHHHHHcCCEEEEecCCcccCCccCHHHHH
Confidence            999878888889999999999999999999998 8999999999999999999999999999999876667899999999


Q ss_pred             HHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCC
Q 009517          259 KQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEK  338 (533)
Q Consensus       259 ~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (533)
                      +.+++      +++++++++||||||.+++.+++++|+++|+++|++||+||+|.++.|++. ++.++..+       ++
T Consensus       164 ~~~~~------~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~~-------~~  229 (403)
T TIGR01265       164 ALADE------KTVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDA-PFIPMASF-------AS  229 (403)
T ss_pred             HHhCc------CccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCC-Cccchhhh-------cc
Confidence            98866      789999999999999999999999999999999999999999999998653 44454443       34


Q ss_pred             CceEEEEecCCccCCCCCCCeeEEEEEecCCH-----HHHHHHHHhhhccccCChHHHHHHHHHcCCCCCCChhHHHHHH
Q 009517          339 DISLVSFQSVSKGYYGECGKRGGYMEVTGFSA-----EVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCA  413 (533)
Q Consensus       339 ~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~-----~~~~~l~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~  413 (533)
                      +.++|+++||||.| ++||+|+||+++.. ++     ++++.+........+++.+.|.++..+|.+.         ...
T Consensus       230 ~~~vi~~~S~SK~~-~~pGlRiG~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---------~~~  298 (403)
T TIGR01265       230 IVPVLSLGGISKRW-VVPGWRLGWIIIHD-PHGIFRDTVLQGLKNLLQRILGPATIVQGALPDILENT---------PQE  298 (403)
T ss_pred             CCcEEEEeeccccc-CCCcceEEEEEEeC-chhhhHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHhC---------hHH
Confidence            44689999999998 78999999998721 21     2444454444345678999999999888531         124


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCC
Q 009517          414 ERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGF  493 (533)
Q Consensus       414 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f  493 (533)
                      ++++.+++++++++.+.+.|+.++|+.+..|.||+|+|++++...  .     .+..++..++..+++++||.+.||..|
T Consensus       299 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~g~f~~~~~~~~~--~-----~~~~~~~~~~~~l~~~~gv~v~pg~~f  371 (403)
T TIGR01265       299 FFDGKISVLKSNAELCYEELKDIPGLVCPKPEGAMYLMVKLELEL--F-----PEIKDDVDFCEKLVREESVICLPGSAF  371 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCceecCCCceeEEEEeccccc--c-----CCCCCHHHHHHHHHHhCCEEEeCcccc
Confidence            567788889999999999999887888888999999997765210  0     011134566677788899999999999


Q ss_pred             CCCCCCceEEEEecCCcCcHHHHHHHHHHHHHHH
Q 009517          494 GQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       494 ~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~  527 (533)
                      +. .  ++|||+++.+++++++++++|.++++++
T Consensus       372 ~~-~--~~iRis~~~~~~~l~~~l~~l~~~~~~~  402 (403)
T TIGR01265       372 GL-P--NWVRITITVPESMLEEACSRIKEFCERH  402 (403)
T ss_pred             CC-C--CeEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence            73 3  3999999977889999999999888653

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>PRK07777 aminotransferase; Validated

Probab=100.00  E-value=1.3e-48  Score=402.08  Aligned_cols=354  Identities=23%  Similarity=0.342  Sum_probs=294.5

Q ss_pred             eeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHH
Q 009517           99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA  178 (533)
Q Consensus        99 ~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~  178 (533)
                      ++||++|.|+.                      +.       |+.+.+++.+.+..    ....|++..|.++||+++++
T Consensus        26 ~i~l~~g~p~~----------------------~~-------~~~~~~~~~~~~~~----~~~~Y~~~~g~~~lr~~ia~   72 (387)
T PRK07777         26 AVNLGQGFPDE----------------------DG-------PPEMLEAAQEAIAG----GVNQYPPGPGIPELRAAIAA   72 (387)
T ss_pred             eEEccCCCCCC----------------------CC-------CHHHHHHHHHHHhc----CCCCCCCCCCCHHHHHHHHH
Confidence            89999999985                      22       45677777666654    24679999999999999999


Q ss_pred             HHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCC-CCCCCCHHH
Q 009517          179 GIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEA-TGWGLETSE  256 (533)
Q Consensus       179 ~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~-~~~~ld~~~  256 (533)
                      ++.+.+|.+++++ +|++|+|+++++..++..++ ++||+|+++.|+|+.|..+++..|.+++.++++++ .+|.+|+++
T Consensus        73 ~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~-~~gd~vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~  151 (387)
T PRK07777         73 QRRRRYGLEYDPDTEVLVTVGATEAIAAAVLGLV-EPGDEVLLIEPYYDSYAAVIAMAGAHRVPVPLVPDGRGFALDLDA  151 (387)
T ss_pred             HHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhc-CCCCEEEEeCCCchhhHHHHHHCCCEEEEeecCCccCCCcCCHHH
Confidence            9998889888776 79999999999999999988 89999999999999999999999999999999876 478899999


Q ss_pred             HHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCC
Q 009517          257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG  336 (533)
Q Consensus       257 l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~  336 (533)
                      +++.+++      ++++|++++||||||.+++.+++++|+++|++|++++|+||+|.++.|.+. .+.++..+ .+    
T Consensus       152 l~~~~~~------~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~-~~~~~~~~-~~----  219 (387)
T PRK07777        152 LRAAVTP------RTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGA-RHLPLATL-PG----  219 (387)
T ss_pred             HHHhcCc------ccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCC-CcccHhhC-CC----
Confidence            9998876      789999999999999999999999999999999999999999999988553 33343332 11    


Q ss_pred             CCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHH
Q 009517          337 EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAER  415 (533)
Q Consensus       337 ~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~  415 (533)
                       ...++|++.||||+| |+||+|+||+++   ++++++.+..... ..++++.+.|.++..++...+          +++
T Consensus       220 -~~~~~i~~~S~SK~~-g~~GlRiG~~~~---~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~----------~~~  284 (387)
T PRK07777        220 -MRERTVTISSAAKTF-NVTGWKIGWACG---PAPLIAAVRAAKQYLTYVGGAPFQPAVAHALDHED----------AWV  284 (387)
T ss_pred             -CcCcEEEEeechhhc-cCcCceeEEEec---CHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhCCc----------HHH
Confidence             123689999999999 899999999998   9999988887665 456677888888888875422          445


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCC
Q 009517          416 DGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ  495 (533)
Q Consensus       416 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~  495 (533)
                      +.+++.++++++.+.+.|+++ |+++.+|+|+||+|++++..          +..++..++.++++++||.+.||..|+.
T Consensus       285 ~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~g~~~~~~~~~~~----------~~~~~~~~~~~l~~~~gv~v~pg~~f~~  353 (387)
T PRK07777        285 AALRDSLQAKRDRLAAGLAEA-GFEVHDSAGTYFLCADPRPL----------GYDDGTEFCRALPERVGVAAIPMSVFYD  353 (387)
T ss_pred             HHHHHHHHHHHHHHHHHHHhC-CCCccCCCcceEEEeccccc----------CCCCHHHHHHHHHHhCCEEEeCchHhCC
Confidence            678889999999999999998 88889999999999765410          0123566777877889999999999963


Q ss_pred             --CCCCceEEEEecCCcCcHHHHHHHHHHHH
Q 009517          496 --VPGTWHFRCTILPQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       496 --~~g~~~iRis~~~~~e~i~~~~~~l~~~l  524 (533)
                        ..+.++|||+++.+++++++++++|+++.
T Consensus       354 ~~~~~~~~~Ri~~~~~~~~l~~~l~~l~~~~  384 (387)
T PRK07777        354 PADAWNHLVRFAFCKRDDTLDEAIRRLRALR  384 (387)
T ss_pred             CCcCCCCeEEEEecCCHHHHHHHHHHHHHHh
Confidence              23356999999988889999999998764

>PRK05764 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.5e-48  Score=402.84  Aligned_cols=388  Identities=25%  Similarity=0.415  Sum_probs=319.6

Q ss_pred             cCcccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCC
Q 009517           61 LNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLF  140 (533)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~  140 (533)
                      +++++....+.++..+...+.++...+.+         +++|+.|+|..                      +.       
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~~~~~----------------------~~-------   45 (393)
T PRK05764          4 LSKRVSRVTPSATLAVTAKAKELKAQGRD---------VISLGAGEPDF----------------------DT-------   45 (393)
T ss_pred             hhhhhhhcCchHHHHHHHHHHHHHhccCC---------EEEeCCCCCCC----------------------CC-------
Confidence            35567677777777777777776655444         99999999874                      21       


Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      ++.+.+++.+.+.+    ....|++..|..+||+++|+++.+.+|..+++++|++|+|+++++..++..++ ++||.|++
T Consensus        46 ~~~~~~~~~~~~~~----~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~-~~gd~vl~  120 (393)
T PRK05764         46 PEHIKEAAIEALDD----GKTKYTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMALL-DPGDEVII  120 (393)
T ss_pred             CHHHHHHHHHHHhc----CCCCcCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHHHHHHhc-CCCCEEEe
Confidence            57777777777764    24569999999999999999999888888889999999999999999999988 79999999


Q ss_pred             cCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHH
Q 009517          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (533)
Q Consensus       221 ~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~  300 (533)
                      ++|+|..|..+++..|.+++.++++++++|.+|++.+++++++      ++++|++++|+||||.++|.+++++|+++|+
T Consensus       121 ~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~------~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~  194 (393)
T PRK05764        121 PAPYWVSYPEMVKLAGGVPVFVPTGEENGFKLTVEQLEAAITP------KTKALILNSPSNPTGAVYSPEELEAIADVAV  194 (393)
T ss_pred             cCCCCcchHHHHHHcCCEEEEEecCcccCCcCCHHHHHHhhCc------cceEEEEECCCCCCCcccCHHHHHHHHHHHH
Confidence            9999999999999999999999998767889999999999865      7899999999999999999999999999999


Q ss_pred             HcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhh
Q 009517          301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA  380 (533)
Q Consensus       301 ~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~  380 (533)
                      +||+++|+||+|..+.|++. ...++..+..+     ...++|++.||||.+ |++|+|+||+++   ++++++.+....
T Consensus       195 ~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~-----~~~~~i~~~s~SK~~-~~~G~RiG~i~~---~~~~~~~~~~~~  264 (393)
T PRK05764        195 EHDIWVLSDEIYEKLVYDGA-EFTSIASLSPE-----LRDRTITVNGFSKAY-AMTGWRLGYAAG---PKELIKAMSKLQ  264 (393)
T ss_pred             HCCcEEEEeccccceeeCCC-CcccHHHcCCC-----CcCCEEEEecCcccc-cCccceeEEEec---CHHHHHHHHHHH
Confidence            99999999999999888543 23344443222     123689999999999 899999999998   999999998776


Q ss_pred             h-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHH
Q 009517          381 S-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEK  459 (533)
Q Consensus       381 ~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~  459 (533)
                      . .+.+++++.|.++..+|+..          .++++++++.++++++.+.+.|++++|+.+..|+|++|+|++++....
T Consensus       265 ~~~~~~~~~~~q~~~~~~l~~~----------~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~g~~~~~~~~~~~~~  334 (393)
T PRK05764        265 SHSTSNPTSIAQYAAVAALNGP----------QDEVEEMRQAFEERRDLMVDGLNEIPGLECPKPEGAFYVFPNVSKLLG  334 (393)
T ss_pred             hhcccCCChHHHHHHHHHHcCC----------hHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCcceEEEEecccccc
Confidence            5 55788999999999888521          144567788899999999999999889999999999999976652110


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHHHH
Q 009517          460 AIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~  527 (533)
                            ..+ .++.+++..+++++||.+.||..|+.   .++|||+++.+++++++++++|.++++++
T Consensus       335 ------~~~-~~~~~~~~~l~~~~gi~v~~g~~f~~---~~~vRis~~~~~~~~~~~i~~l~~~~~~~  392 (393)
T PRK05764        335 ------KSI-TDSLEFAEALLEEAGVAVVPGIAFGA---PGYVRLSYATSLEDLEEGLERIERFLESL  392 (393)
T ss_pred             ------ccc-CCHHHHHHHHHHhCCEEEccccccCC---CCEEEEEecCCHHHHHHHHHHHHHHHHhh
Confidence                  000 02355666777889999999999974   34999999988999999999999988754

>PRK09275 aspartate aminotransferase; Provisional

Probab=100.00  E-value=3e-49  Score=410.59  Aligned_cols=363  Identities=20%  Similarity=0.281  Sum_probs=277.5

Q ss_pred             cceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHH
Q 009517           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (533)
Q Consensus        97 ~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~ai  176 (533)
                      .++|+|++|.|++                      ++       |+.+.+ +.+.+..     . .|+++.|.++||++|
T Consensus       100 ~~~i~l~~g~p~~----------------------~~-------~~~v~e-~~~~~~~-----~-~Y~~~~g~~~lreai  143 (527)
T PRK09275        100 RDAVSYVRDQLGF----------------------DA-------DEFVYE-LVDGIIG-----D-NYPVPDRMLKHTEKI  143 (527)
T ss_pred             HHHHhhcCCCCCC----------------------CC-------CHHHHH-HHHHHhc-----C-CCCCCCCCHHHHHHH
Confidence            4589999999986                      33       455555 5555532     2 499999999999999


Q ss_pred             HHHHHhh-cCCCC-C--CCCEEEcCChHHHHHHHHHH-----hccCCCCeEEEcCCcCcchHHHHHHhC--CeEEEEecC
Q 009517          177 AAGIEAR-DGFPA-D--PNDIFLTDGASPAVHMMMQL-----LIRSENDGILCPIPQYPLYSASIALHG--GTLVPYYLD  245 (533)
Q Consensus       177 a~~~~~~-~g~~~-~--~~~i~~t~G~~~al~~~~~~-----l~~~~gd~Vlv~~p~~~~~~~~~~~~g--~~~~~v~~~  245 (533)
                      ++++.++ ++... .  .++|++|+|+++|+..++.+     ++ +|||+|++++|+|+.|..++...|  .+++.++.+
T Consensus       144 a~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~~~aL~~~~ll-~pGD~Vlv~~P~y~~Y~~~~~l~g~~~~~v~v~~~  222 (527)
T PRK09275        144 VKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYIFDSLKENGLL-KAGDKIALMTPIFTPYLEIPELPRYDLEVVHINAD  222 (527)
T ss_pred             HHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhhhhcC-CCCCEEEEeCCChHHHHHHHHHcCCCeEEEEeecC
Confidence            9966543 33222 2  34999999999999999886     56 899999999999999999988875  555666666


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHH--cCCEEEEccccccccccCCCCc
Q 009517          246 EATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK--EGLVLLADEVYQENVYVPEKKF  323 (533)
Q Consensus       246 ~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~--~~~~lI~De~y~~~~~~~~~~~  323 (533)
                      ++++|.+|++++++++++      ++|+|++++||||||.+++.+++++|+++|++  ++++||+||+|..|.+    .+
T Consensus       223 ~~~~f~~d~~~l~~~~~~------~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~----~~  292 (527)
T PRK09275        223 EENEWQYPDSELEKLRDP------SIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVD----DF  292 (527)
T ss_pred             cccCCCCCHHHHHhhcCC------CCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcc----cc
Confidence            667899999999998765      89999999999999999999999999999965  4999999999999764    13


Q ss_pred             ccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHH-----HHHHH----------------------
Q 009517          324 HSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAE-----VREQI----------------------  376 (533)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~-----~~~~l----------------------  376 (533)
                      .++...       .++ ++|++.||||.| ||+|||+||+++   +++     +++.+                      
T Consensus       293 ~s~~~~-------~~~-~~I~v~SfSK~f-~mtG~RlG~i~~---~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~  360 (527)
T PRK09275        293 RSLFAV-------LPY-NTILVYSFSKYF-GATGWRLGVIAL---HEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKL  360 (527)
T ss_pred             cCHHHh-------CCC-CEEEEeehhhhc-cCcHhHHhhhhc---CchhHHHHHHHhccHHHHHHHHhhhhhccCCcchh
Confidence            343332       133 689999999999 899999999998   554     33222                      


Q ss_pred             ----------HHhhh-ccccCChHHHHHH-----HHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Q 009517          377 ----------YKVAS-VNLCSNISGQILA-----SLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGIT  440 (533)
Q Consensus       377 ----------~~~~~-~~~~~~~~~q~a~-----~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~  440 (533)
                                .++.. .+.+.+.+.|.++     .++|+..          ..+.+.+++.|++|++.+.+.|. + ++.
T Consensus       361 ~fidrlvad~~~v~~~~t~~~s~p~Q~a~al~~~~all~~~----------~~~~~~~~~~~~~Rr~~l~~~Lg-~-~~~  428 (527)
T PRK09275        361 KFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALLDEE----------DAYKKAMKDIIRRRYKALYEGLG-L-PEP  428 (527)
T ss_pred             hhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhCc----------hHHHHHHHHHHHHHHHHHHHHcC-C-CCc
Confidence                      23333 6688888888863     3445432          24467788899999999999883 2 344


Q ss_pred             EecCCceeEEecccCCCHH-HHH--HH-HhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec-CCcCcHHH
Q 009517          441 CNKAEGAMYLFPRIQLPEK-AIK--AA-EAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-PQEDKIPA  515 (533)
Q Consensus       441 ~~~~~gg~~~~~~~~~~~~-~~~--~~-~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~  515 (533)
                      ..+|+|+||+|++++.-.. ...  .. ......++.+++.+++++.||.+.||..||..  .++||||++ .+++++.+
T Consensus       429 ~~~p~g~fY~~~di~~~~~~~~g~~f~~~l~~~~~~~~f~~~Ll~e~gV~v~PG~~Fg~~--~~~vRis~a~~~~~~~~~  506 (527)
T PRK09275        429 EDPNNAAYYTLIDLEEWAEKNYGKEFADYLKKNYSPVDLLFRLAEETGVVLLPGGGFGGP--EWSVRVSLANLNEEDYAK  506 (527)
T ss_pred             CCCCCeeEEEEEEhHHhhhhccCchhhhhhhccCCHHHHHHHHHhcCCEEEeCchhhCCC--CCeEEEEEecCCHHHHHH
Confidence            4679999999987651100 000  00 00011246788899999999999999999843  458999998 78899999


Q ss_pred             HHHHHHHHHHHHHHHhc
Q 009517          516 IVTRLTDFHKNFMDKFR  532 (533)
Q Consensus       516 ~~~~l~~~l~~~~~~~~  532 (533)
                      +.++|+++++++.++|+
T Consensus       507 ~~~rl~~~l~~y~~~~~  523 (527)
T PRK09275        507 IGKAIRKLLDEYYEEYK  523 (527)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999999885

>PRK09082 methionine aminotransferase; Validated

Probab=100.00  E-value=1.1e-48  Score=402.15  Aligned_cols=351  Identities=20%  Similarity=0.273  Sum_probs=294.4

Q ss_pred             eeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHH
Q 009517           99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA  178 (533)
Q Consensus        99 ~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~  178 (533)
                      +|+|+.|.|+.                      +.       ++.+.+++.+.+..    ....|++..|.++||+++++
T Consensus        32 ~i~l~~g~~~~----------------------~~-------~~~~~~~~~~~~~~----~~~~Y~~~~G~~~lr~~~a~   78 (386)
T PRK09082         32 AINLSQGFPDF----------------------DG-------PPYLVEALAYAMAA----GHNQYPPMTGVAALREAIAA   78 (386)
T ss_pred             EEEecCCCCCC----------------------CC-------CHHHHHHHHHHHHc----CCCCCCCCCCcHHHHHHHHH
Confidence            89999999874                      21       46677777666654    24679999999999999999


Q ss_pred             HHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHH
Q 009517          179 GIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEV  257 (533)
Q Consensus       179 ~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l  257 (533)
                      ++.+.+|.+.+++ +|++|+|+++++..++..++ ++||+|++++|+|..+...++..|.+++.++++.+ +|++|++++
T Consensus        79 ~l~~~~~~~~~~~~~i~~t~G~~~al~~~~~~~~-~~gd~Vli~~p~y~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~~l  156 (386)
T PRK09082         79 KTARLYGRQYDADSEITVTAGATEALFAAILALV-RPGDEVIVFDPSYDSYAPAIELAGGRAVRVALQPP-DFRVDWQRF  156 (386)
T ss_pred             HHHHHhCCCCCCCCcEEEeCCHHHHHHHHHHHHc-CCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCcc-cccCCHHHH
Confidence            9998889877775 89999999999999999998 89999999999999999999999999999999754 689999999


Q ss_pred             HHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCC
Q 009517          258 KKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE  337 (533)
Q Consensus       258 ~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~  337 (533)
                      ++.+++      ++++|++++||||||.+++.+++++|+++|++||+++|+||+|.++.|++. +..++..+ ..     
T Consensus       157 ~~~~~~------~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~-~~~s~~~~-~~-----  223 (386)
T PRK09082        157 AAAISP------RTRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGA-GHASVLRH-PE-----  223 (386)
T ss_pred             HHhcCc------cceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCC-CCCChhhC-cC-----
Confidence            999876      789999999999999999999999999999999999999999999998653 34444332 11     


Q ss_pred             CCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHH
Q 009517          338 KDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERD  416 (533)
Q Consensus       338 ~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~  416 (533)
                      ...++|+++||||.+ |++|+|+||+++   ++++++.+.+... ..++++.+.|.++..++...          .++.+
T Consensus       224 ~~~~~i~~~S~SK~~-~~~G~RiG~iv~---~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~----------~~~~~  289 (386)
T PRK09082        224 LRERAFVVSSFGKTY-HVTGWKVGYCVA---PAALSAEFRKVHQYNTFTVNTPAQLALADYLRAE----------PEHYL  289 (386)
T ss_pred             ccCcEEEEeechhhc-cchhhhhhhhhC---CHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhCC----------hHHHH
Confidence            123689999999999 899999999998   9999999988765 56788999999988888521          14456


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCC-
Q 009517          417 GILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ-  495 (533)
Q Consensus       417 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~-  495 (533)
                      ++++.++++++.+.+.|++. |+.+.+++||||+|++++...         +. ++.+++..+++++||.+.||+.|+. 
T Consensus       290 ~~~~~~~~~~~~~~~~L~~~-~~~~~~~~g~~~~~~~~~~~~---------~~-~~~~~~~~l~~~~~v~v~pg~~f~~~  358 (386)
T PRK09082        290 ELPAFYQAKRDRFRAALANS-RFKLLPCEGTYFQLVDYSAIS---------DL-DDVEFCQWLTREHGVAAIPLSVFYAD  358 (386)
T ss_pred             HHHHHHHHHHHHHHHHHHhC-CCcccCCCeeEEEEEeccccC---------CC-CHHHHHHHHHHhCCEEEeCcHHhCCC
Confidence            67888999999999999987 899999999999997764101         11 3556677778899999999999863 


Q ss_pred             CCCCceEEEEecCCcCcHHHHHHHHHH
Q 009517          496 VPGTWHFRCTILPQEDKIPAIVTRLTD  522 (533)
Q Consensus       496 ~~g~~~iRis~~~~~e~i~~~~~~l~~  522 (533)
                      ..+.++|||+++.+++++++++++|++
T Consensus       359 ~~~~~~~Ri~~~~~~~~l~~~~~rl~~  385 (386)
T PRK09082        359 PFPHRLVRLCFAKQEETLDAAAERLCQ  385 (386)
T ss_pred             CCCCCEEEEEecCCHHHHHHHHHHHhh
Confidence            334569999999888889999998874

>PRK08175 aminotransferase; Validated

Probab=100.00  E-value=5e-48  Score=398.58  Aligned_cols=357  Identities=22%  Similarity=0.352  Sum_probs=294.0

Q ss_pred             eeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHH
Q 009517           99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA  178 (533)
Q Consensus        99 ~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~  178 (533)
                      +++|+.|+|+.                      ..       |+.+++++.+.+...   ....|++..|.++||+++++
T Consensus        31 ~i~l~~g~p~~----------------------~~-------~~~~~~~~~~~~~~~---~~~~Y~~~~G~~~lr~aia~   78 (395)
T PRK08175         31 IIDFSMGNPDG----------------------PT-------PPHIVEKLCEVAQRP---DTHGYSTSRGIPRLRRAISR   78 (395)
T ss_pred             eEEcCCCCCCC----------------------CC-------CHHHHHHHHHHHhCC---CcCCCCCCCCCHHHHHHHHH
Confidence            99999999884                      21       566777777766432   35789999999999999999


Q ss_pred             HHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHH
Q 009517          179 GIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEV  257 (533)
Q Consensus       179 ~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l  257 (533)
                      ++++++|+.++++ +|++|+|+++++..++..++ ++||+|++++|+|+.+...+...|++++.+++++++.   +++++
T Consensus        79 ~~~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~-~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~---~~~~l  154 (395)
T PRK08175         79 WYQDRYDVDIDPESEAIVTIGSKEGLAHLMLATL-DHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVD---FFNEL  154 (395)
T ss_pred             HHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhC-CCCCEEEEcCCCCcchHHHHHHcCCeEEEEecccCCC---cHHHH
Confidence            9998889888887 89999999999999999988 8999999999999999999999999999999986533   47888


Q ss_pred             HHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCC
Q 009517          258 KKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE  337 (533)
Q Consensus       258 ~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~  337 (533)
                      +++++..   .+++++|++++||||||.+++.+++++|+++|++||++||+||+|.++.|++. ...++..+ .     .
T Consensus       155 ~~~l~~~---~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~-~~~~~~~~-~-----~  224 (395)
T PRK08175        155 ERAIRES---YPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGW-KAPSIMQV-P-----G  224 (395)
T ss_pred             HHHHhhc---cCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCC-CCcchhcC-C-----C
Confidence            8887642   23689999999999999999999999999999999999999999999988543 23343322 1     1


Q ss_pred             CCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHH
Q 009517          338 KDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERD  416 (533)
Q Consensus       338 ~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~  416 (533)
                      ....+|++.||||.| |+||+|+||+++   ++++++.+.+... ..++++.+.|.++..+|...          .++++
T Consensus       225 ~~~~~i~~~S~SK~~-g~pGlRiG~~~~---~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~----------~~~~~  290 (395)
T PRK08175        225 AKDVAVEFFTLSKSY-NMAGWRIGFMVG---NPELVSALARIKSYHDYGTFTPLQVAAIAALEGD----------QQCVR  290 (395)
T ss_pred             cccCEEEEeeccccc-cCcchhheeeeC---CHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCc----------HHHHH
Confidence            123578899999999 899999999997   9999999988775 45677888898888888532          24567


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCC
Q 009517          417 GILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQV  496 (533)
Q Consensus       417 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~  496 (533)
                      .+++.|+++++.+.+.|+++ |+.+..|+||+|+|++++....         ..++..++.++++++||.+.||..|+ .
T Consensus       291 ~~~~~~~~~~~~~~~~L~~~-~~~~~~p~~g~~i~i~l~~~~~---------~~~~~~~~~~l~~~~gv~v~p~~~f~-~  359 (395)
T PRK08175        291 DIAEQYKRRRDVLVKGLHEA-GWMVEMPKASMYVWAKIPEPYA---------AMGSLEFAKKLLNEAKVCVSPGIGFG-D  359 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHc-CCcccCCCEEEEEEEECCcccC---------CCCHHHHHHHHHHhCCEEEeCchhhC-c
Confidence            78899999999999999998 8888889999999977652110         01245666677888999999999997 3


Q ss_pred             CCCceEEEEecCCcCcHHHHHHHHHHHHHH
Q 009517          497 PGTWHFRCTILPQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       497 ~g~~~iRis~~~~~e~i~~~~~~l~~~l~~  526 (533)
                      .+.+++||+++.+++.+++++++|.+++++
T Consensus       360 ~~~~~lRis~~~~~~~~~~al~~l~~~l~~  389 (395)
T PRK08175        360 YGDTHVRFALIENRDRIRQAIRGIKAMFRA  389 (395)
T ss_pred             CCCCeEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence            455699999997788999999999998864

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=100.00  E-value=6e-48  Score=391.72  Aligned_cols=343  Identities=21%  Similarity=0.357  Sum_probs=284.7

Q ss_pred             eeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHH
Q 009517           99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA  178 (533)
Q Consensus        99 ~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~  178 (533)
                      +++|+.|+|..                      +.       ++.+.+++.+.+..     ...|++..|..+||+++++
T Consensus         2 ~~~~~~g~p~~----------------------~~-------~~~~~~~~~~~~~~-----~~~Y~~~~G~~~lr~aia~   47 (350)
T TIGR03537         2 LFDFGTGDPKE----------------------PT-------PPFIRKALIDAVPE-----VSQYPSALGTKALREAISG   47 (350)
T ss_pred             eEeccCCCCCC----------------------CC-------CHHHHHHHHHHHhc-----cCCCCCCCCCHHHHHHHHH
Confidence            78999999874                      22       56677777666543     5679999999999999999


Q ss_pred             HHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHhccCCC---CeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCH
Q 009517          179 GIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSEN---DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLET  254 (533)
Q Consensus       179 ~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~g---d~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~  254 (533)
                      ++.+.+|++++++ +|++|+|+++++..++..++ ++|   |+|+++.|+|+.|...++..|++++.++++.+++|.+|+
T Consensus        48 ~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~~~~-~~g~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~  126 (350)
T TIGR03537        48 WFERRFGVKLDPDAQVLPSAGSKEAIFHFPLVFI-DPEEDRRRVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLRL  126 (350)
T ss_pred             HHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHHc-CCCCCCceEEEcCCCCcchHHHHHhcCCEEEEcccCcccCCccCH
Confidence            9999889999998 99999999999999999998 776   699999999999999999999999999998667889999


Q ss_pred             HHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcC
Q 009517          255 SEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG  334 (533)
Q Consensus       255 ~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~  334 (533)
                      +++++++++      +++++++++||||||.+++.+++++|+++|++||++||+||+|..+.+++  +..++..+     
T Consensus       127 ~~l~~~~~~------~~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~--~~~~~~~~-----  193 (350)
T TIGR03537       127 EKVEKSILE------ETKIVWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGE--PPHSALEV-----  193 (350)
T ss_pred             HHHHHhhhh------ccEEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCC--CCCchhhc-----
Confidence            999999877      79999999999999999999999999999999999999999999887743  23333222     


Q ss_pred             CCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHH
Q 009517          335 YGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCA  413 (533)
Q Consensus       335 ~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~  413 (533)
                        +. .++|++.||||++ |++|+|+||+++   ++++++.+..... ...+++.+.|.++..++...           +
T Consensus       194 --~~-~~~i~~~s~SK~~-g~~GlRiG~~~~---~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-----------~  255 (350)
T TIGR03537       194 --GI-ENVLAFHSLSKRS-GMTGYRSGFVAG---DEKLISFLRKLRANFGVASPDFVQAAAKAAWSDD-----------N  255 (350)
T ss_pred             --Cc-CCEEEEeeccccc-CCccccceeeec---CHHHHHHHHHHHHhhccCCCHHHHHHHHHHhCCc-----------H
Confidence              22 3689999999998 889999999987   8999999888765 44566667888877776531           3


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCC
Q 009517          414 ERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGF  493 (533)
Q Consensus       414 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f  493 (533)
                      ++++.++.++++++.+.+.|++. |+++..|+||+|+|++++..            .++..+++.+ .++||.+.||..|
T Consensus       256 ~~~~~r~~l~~~~~~~~~~l~~~-g~~~~~~~g~~~~~~~~~~~------------~~~~~l~~~L-~~~gv~v~~g~~f  321 (350)
T TIGR03537       256 HVLERRKIFKRKRDLFIEFFNKV-GLEYLYPDATFYLWVKVPSG------------IDAKDYALRL-LENGIVVAPGENF  321 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCeEEEEEEECCCC------------CCHHHHHHHH-HHCCEEEcCchhh
Confidence            34567788999999999999988 88889999999999776521            1234555555 4589999999999


Q ss_pred             CCCCCCceEEEEecCCcCcHHHHHHHHHH
Q 009517          494 GQVPGTWHFRCTILPQEDKIPAIVTRLTD  522 (533)
Q Consensus       494 ~~~~g~~~iRis~~~~~e~i~~~~~~l~~  522 (533)
                      +. .+.++|||+++.+++++++++++|++
T Consensus       322 ~~-~~~~~~Ri~~~~~~~~~~~~l~~~~~  349 (350)
T TIGR03537       322 GS-GEEGYVRVALVPTLEECEEALRLWER  349 (350)
T ss_pred             CC-CCCCEEEEEecCCHHHHHHHHHHHhc
Confidence            73 33459999998778889999988875

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PTZ00376 aspartate aminotransferase; Provisional

Probab=100.00  E-value=2.7e-48  Score=401.35  Aligned_cols=324  Identities=17%  Similarity=0.226  Sum_probs=261.3

Q ss_pred             ccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEE--EcCChHHHHHHHHH---HhccCCCCeEEEcCCcCcchHHHHHH
Q 009517          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIF--LTDGASPAVHMMMQ---LLIRSENDGILCPIPQYPLYSASIAL  234 (533)
Q Consensus       160 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~--~t~G~~~al~~~~~---~l~~~~gd~Vlv~~p~~~~~~~~~~~  234 (533)
                      ..+|++..|.++||+++++++.+..+..+++++|+  .|.|+++++..++.   .++ ++||+|++++|+|+.|..+++.
T Consensus        65 ~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~~~-~~Gd~Vlv~~P~y~~~~~~~~~  143 (404)
T PTZ00376         65 DKEYLPIEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRFL-PAGTTVYVSNPTWPNHVNIFKS  143 (404)
T ss_pred             CCCCCCCCCCHHHHHHHHHHhcCCCccccccCeEEEeeccCcchHHHHHHHHHHHhc-CCCCEEEEcCCCchhHHHHHHH
Confidence            57899999999999999999977666667889998  58999999988875   556 7999999999999999999999


Q ss_pred             hCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEcccccc
Q 009517          235 HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE  314 (533)
Q Consensus       235 ~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~  314 (533)
                      +|++++.+++.++++|++|++.++++++..   .++++++++++||||||.++|.+++++|+++|++|+++||+||+|.+
T Consensus       144 ~G~~~~~v~l~~~~~~~~d~~~l~~~~~~~---~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~  220 (404)
T PTZ00376        144 AGLNVKEYRYYDPKTKGLDFDGMLEDLRTA---PNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQG  220 (404)
T ss_pred             cCCceeeccccCcccCCcCHHHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcC
Confidence            999999999965557899999999999752   12467777899999999999999999999999999999999999999


Q ss_pred             ccccCC-CCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHH----HHhhh-ccccCCh
Q 009517          315 NVYVPE-KKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQI----YKVAS-VNLCSNI  388 (533)
Q Consensus       315 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l----~~~~~-~~~~~~~  388 (533)
                      |.|++. ....++..+. .     ...++|+++||||+| +|||||+||+++...++++++.+    .+... ...+++.
T Consensus       221 ~~~~~~~~~~~~~~~~~-~-----~~~~vi~i~SfSK~~-~~~GlRvG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  293 (404)
T PTZ00376        221 FASGDLDKDAYAIRLFA-E-----RGVEFLVAQSFSKNM-GLYGERIGALHIVCANKEEAANVLSQLKLIIRPMYSSPPI  293 (404)
T ss_pred             ccCCCHHHHHHHHHHHH-h-----cCCcEEEEEeCCCcc-cccccccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCch
Confidence            988531 1122222221 1     122689999999999 89999999985322377755543    33333 3455678


Q ss_pred             HHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CceEecCCceeEEecccCCCHHHHHHHH
Q 009517          389 SGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLE---GITCNKAEGAMYLFPRIQLPEKAIKAAE  465 (533)
Q Consensus       389 ~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---g~~~~~~~gg~~~~~~~~~~~~~~~~~~  465 (533)
                      ++|.++..+|+++.    ..+.|.+++++++++++++++.+.+.|+++.   ++.+..|+||||+|++++          
T Consensus       294 ~~q~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~p~gg~f~~~~~~----------  359 (404)
T PTZ00376        294 HGARIADRILSDPE----LRAEWLSELKEMSGRIQNMRQLLYDELKALGSPGDWEHIINQIGMFSFTGLT----------  359 (404)
T ss_pred             HHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccCceEEEecCCC----------
Confidence            99999999997431    2345667788889999999999999999872   366778999999997643          


Q ss_pred             hcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec-CCcCcHHHHHHHHHHHHHH
Q 009517          466 AEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-PQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       466 ~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~~~~l~~~l~~  526 (533)
                             ..++.+|++++||.+.||       +    |||++ .+.+++++++++|++++..
T Consensus       360 -------~~~~~~L~~~~~v~v~p~-------~----Ris~~~~~~~~~~~~~~~l~~~~~~  403 (404)
T PTZ00376        360 -------KEQVERLIEKYHIYLLDN-------G----RISVAGLTSKNVDYVAEAIHDVVRN  403 (404)
T ss_pred             -------HHHHHHHHHhCCEeecCC-------C----eEEEeccCHHhHHHHHHHHHHHHhc
Confidence                   245778888889999986       2    99997 9999999999999998753

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=100.00  E-value=6.7e-48  Score=401.99  Aligned_cols=326  Identities=17%  Similarity=0.194  Sum_probs=269.2

Q ss_pred             HHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEc
Q 009517          142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCP  221 (533)
Q Consensus       142 ~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~  221 (533)
                      +.+.+++.+....     ...|++..|..+||++++++++...+   .+++|++|+|+++++..++++++ ++||+|+++
T Consensus       101 p~~~~~~~~~~~~-----~~~Y~~~~g~~~lr~~ia~~~~~~~~---~~~~Iiit~G~~~al~~~~~~l~-~pgd~Vlv~  171 (431)
T PRK15481        101 PDLSRYFARLSRT-----PRLYGDAPVSPELHAWAARWLRDDCP---VAFEIDLTSGAIDAIERLLCAHL-LPGDSVAVE  171 (431)
T ss_pred             HHHHHHHHHhhhh-----hhhcCCcCCCHHHHHHHHHHHhhccC---CcCeEEEecCcHHHHHHHHHHhC-CCCCEEEEe
Confidence            3455555443332     45799999999999999999875422   34699999999999999999998 899999999


Q ss_pred             CCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEe-CCCCCCccCCCHHHHHHHHHHHH
Q 009517          222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLAEENQRAIVDFCK  300 (533)
Q Consensus       222 ~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~-~p~NPtG~~~s~~~l~~i~~l~~  300 (533)
                      +|+|+.|...++.+|++++.++++++   ++|++.|+++++.      ++++++++ +||||||.++|.+++++|+++|+
T Consensus       172 ~P~y~~~~~~~~~~g~~~~~v~~~~~---g~~~~~l~~~~~~------~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~  242 (431)
T PRK15481        172 DPCFLSSINMLRYAGFSASPVSVDAE---GMQPEKLERALAQ------GARAVILTPRAHNPTGCSLSARRAAALRNLLA  242 (431)
T ss_pred             CCCcHHHHHHHHHcCCeEEeeccCCC---CCCHHHHHHHHhc------CCCEEEECCCCCCCCCccCCHHHHHHHHHHHH
Confidence            99999999999999999999999754   6899999999876      68899988 99999999999999999999999


Q ss_pred             Hc-CCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHh
Q 009517          301 KE-GLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV  379 (533)
Q Consensus       301 ~~-~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~  379 (533)
                      ++ +++||+||+|.+|.+.+.   .+..   ..     ...++|+++||||+| | ||+|+||+++   ++++++.+...
T Consensus       243 ~~~~~~ii~De~Y~~~~~~~~---~~~~---~~-----~~~~vi~~~SfSK~~-~-~GlRiG~~i~---~~~~~~~~~~~  306 (431)
T PRK15481        243 RYPQVLVIIDDHFALLSSSPY---HSVI---PQ-----TTQRWALIRSVSKAL-G-PDLRLAFVAS---DSATSARLRLR  306 (431)
T ss_pred             hcCCceEEecCchhhhccCCC---CCCC---cC-----CCCCEEEEeeecccc-C-CCceeEEEeC---CHHHHHHHHHH
Confidence            99 999999999999876432   1211   11     123689999999999 7 8999999998   99999998765


Q ss_pred             hh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCH
Q 009517          380 AS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPE  458 (533)
Q Consensus       380 ~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~  458 (533)
                      .. ..++.+.+.|.++..+|+++.        +.++++++++.|+++++.+.+.|++. |+.+..|+||+|+|++++.  
T Consensus       307 ~~~~~~~~s~~~q~a~~~~l~~~~--------~~~~l~~~~~~~~~~r~~~~~~L~~~-~~~~~~p~gg~f~~~~l~~--  375 (431)
T PRK15481        307 LNSGTQWVSHLLQDLVYACLTDPE--------YQARLAQARLFYAQRRQKLARALQQY-GIAIPSPGDGLNLWLPLDT--  375 (431)
T ss_pred             HhccccCCCHHHHHHHHHHHhCcc--------HHHHHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCeEEEEEECCC--
Confidence            54 446789999999999997643        44567788999999999999999998 8888889999999976641  


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec-CCcCcHHHHHHHHHHHHH
Q 009517          459 KAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-PQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~~~~l~~~l~  525 (533)
                                  ++..++.. |.++||.+.||..|+...+.++|||+++ .+++++++++++|++++.
T Consensus       376 ------------~~~~~~~~-l~~~gV~v~pg~~f~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~~~  430 (431)
T PRK15481        376 ------------DSQATALT-LAKSGWLVREGEAFGVSAPSHGLRITLSTLNDAEINRLAADLHQALN  430 (431)
T ss_pred             ------------CHHHHHHH-HHHCCcEEecCCccccCCCCCeEEEEcCCCChHHHHHHHHHHHHHhc
Confidence                        13344444 4578999999999974333458999998 788899999999998864

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=100.00  E-value=2.2e-47  Score=364.39  Aligned_cols=358  Identities=21%  Similarity=0.330  Sum_probs=310.9

Q ss_pred             ceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHH
Q 009517           98 EILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA  177 (533)
Q Consensus        98 ~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia  177 (533)
                      +++-|++.+.++                      .+       |+++++++.+++..    +..+|+  .+..++.++++
T Consensus        26 DvlPmWVADMDf----------------------~~-------pp~i~~Al~~rvdh----GvfGY~--~~~~~~~~ai~   70 (388)
T COG1168          26 DVLPMWVADMDF----------------------PT-------PPEIIEALRERVDH----GVFGYP--YGSDELYAAIA   70 (388)
T ss_pred             CcceeeeecccC----------------------CC-------CHHHHHHHHHHHhc----CCCCCC--CCCHHHHHHHH
Confidence            388888888886                      44       89999999999987    477888  45788999999


Q ss_pred             HHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCC-CCCCCCCHHH
Q 009517          178 AGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDE-ATGWGLETSE  256 (533)
Q Consensus       178 ~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~-~~~~~ld~~~  256 (533)
                      +|..++++..+.++.|++++|...++..+++.+. ++||.|++..|.|+++....+..|.+++..|+.. +..|.+|+++
T Consensus        71 ~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~~T-~~gd~Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~  149 (388)
T COG1168          71 HWFKQRHQWEIKPEWIVFVPGVVPGISLAIRALT-KPGDGVVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDA  149 (388)
T ss_pred             HHHHHhcCCCCCcceEEEcCcchHhHHHHHHHhC-cCCCeeEecCCCchHHHHHHhhcCcEEEeccccccCCcEEecHHH
Confidence            9999999999999999999999999999999999 8999999999999999999999999999999884 4568889999


Q ss_pred             HHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCC
Q 009517          257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG  336 (533)
Q Consensus       257 l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~  336 (533)
                      ||+++.+.     +++++++||||||||.+++.++|.+|.++|.+||+.||+||+++++++.|. ++.++..+....   
T Consensus       150 LE~~~~~~-----~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~-~h~~~a~ls~~~---  220 (388)
T COG1168         150 LEKAFVDE-----RVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGH-KHIPFASLSERF---  220 (388)
T ss_pred             HHHHHhcC-----CccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCC-CccchhhcChhh---
Confidence            99999884     679999999999999999999999999999999999999999999999874 567766654433   


Q ss_pred             CCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHH-HHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHH
Q 009517          337 EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQI-YKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAE  414 (533)
Q Consensus       337 ~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l-~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~  414 (533)
                       . .+.|.+.|-||+| .++|+.++++++  .++++..+. +++.. ...++|.++..|..++.+.+.          .|
T Consensus       221 -a-~~~it~~saSKtF-NlaGL~~a~~Ii--~n~~lr~~~~~~l~~~~~~~~n~lg~~A~~aAY~~G~----------~W  285 (388)
T COG1168         221 -A-DNSITLTSASKTF-NLAGLKCAYIII--SNRELRAKFLKRLKRNGLHGPSALGIIATEAAYNQGE----------PW  285 (388)
T ss_pred             -h-cceEEEeeccccc-cchhhhheeEEe--cCHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhch----------HH
Confidence             2 3689999999999 799999999998  467764444 33443 567889999999988877554          77


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcC-CCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCC
Q 009517          415 RDGILSSLARRAKTLEDAFNSL-EGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGF  493 (533)
Q Consensus       415 ~~~~~~~~~~~~~~l~~~L~~~-~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f  493 (533)
                      ++++.+.++.+++++.+.|++. |++++..|+|.+.+|++++.          .+.+ ++...+.++++.+|.+.+|..|
T Consensus       286 Ld~L~~yl~~N~~~~~~~l~~~~P~v~v~~p~gTYL~WLD~r~----------l~l~-d~~l~~~ll~~akVal~~G~~F  354 (388)
T COG1168         286 LDELLEYLKDNRDYVADFLNKHLPGVKVTEPQGTYLAWLDCRE----------LGLD-DSELAEFLLEEAKVALSPGSTF  354 (388)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCcEEecCCCceeeeeeccc----------cCCC-hHHHHHHHHHhhcEeccCCCcc
Confidence            8889999999999999999885 99999999999999998871          1222 3445568899999999999999


Q ss_pred             CCCCCCceEEEEecCCcCcHHHHHHHHHHHHHHH
Q 009517          494 GQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       494 ~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~  527 (533)
                      | ..|.+++|++++.+.+.+++++++|+.++++.
T Consensus       355 G-~~g~gf~RlN~acpr~~L~eal~ri~~al~~~  387 (388)
T COG1168         355 G-EEGSGFVRLNFACPRAILEEALERLKRALKKR  387 (388)
T ss_pred             C-cCCCceEEEecCCCHHHHHHHHHHHHHHHhcc
Confidence            9 67888999999999999999999999888753

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=100.00  E-value=1e-47  Score=396.33  Aligned_cols=338  Identities=18%  Similarity=0.222  Sum_probs=264.6

Q ss_pred             HHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCE--EEcCChHHHHHHHHHHhc-cCCCCeE
Q 009517          142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDI--FLTDGASPAVHMMMQLLI-RSENDGI  218 (533)
Q Consensus       142 ~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i--~~t~G~~~al~~~~~~l~-~~~gd~V  218 (533)
                      +.+.+++.+.+...   ....|++..|.++||+++++++.+..+..+++++|  ++|+|+++|+..+++.+. .++||+|
T Consensus        47 ~~l~~a~~~~~~~~---~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~V  123 (396)
T PRK09257         47 RAVKKAEARLLETE---TTKNYLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDAKV  123 (396)
T ss_pred             HHHHHHHHHhcccc---cCCCcCCCCCCHHHHHHHHHHhcCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCCeE
Confidence            45555555554331   24579999999999999999998776666688887  999999999999987662 1799999


Q ss_pred             EEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHH
Q 009517          219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF  298 (533)
Q Consensus       219 lv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l  298 (533)
                      ++++|+|+.|..+++.+|++++.+|+..+++|++|++.++++++..   .++++++++++||||||.++|.+++++|+++
T Consensus       124 lv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~---~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~  200 (396)
T PRK09257        124 WVSDPTWPNHRAIFEAAGLEVKTYPYYDAATKGLDFDAMLADLSQA---PAGDVVLLHGCCHNPTGADLTPEQWDELAEL  200 (396)
T ss_pred             EECCCCcccHHHHHHHcCCcEEEEeccccccCccCHHHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHH
Confidence            9999999999999999999999999854446899999999998752   1135566668999999999999999999999


Q ss_pred             HHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHH----HHH
Q 009517          299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAE----VRE  374 (533)
Q Consensus       299 ~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~----~~~  374 (533)
                      |++||++||+||+|.+|.++.+....++..+. .     ...++|+++||||+| +++|||+||+++...+++    ++.
T Consensus       201 a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~-~-----~~~~vi~i~SfSK~~-~~~GlRiG~~~~~~~~~~~~~~~~~  273 (396)
T PRK09257        201 LKERGLIPFLDIAYQGFGDGLEEDAYGLRAFA-A-----AGLELLVASSFSKNF-GLYGERVGALSVVAEDAEEADRVLS  273 (396)
T ss_pred             HHhCCcEEEEeccccccccchHHHHHHHHHHH-h-----cCCcEEEEEEcCCcC-ccccccceeEEEEeCCHHHHHHHHH
Confidence            99999999999999998874222223333331 1     123589999999999 889999999984222443    334


Q ss_pred             HHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C--CceEecCCceeEE
Q 009517          375 QIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL-E--GITCNKAEGAMYL  450 (533)
Q Consensus       375 ~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~--g~~~~~~~gg~~~  450 (533)
                      ++..... ..++++.+.|.++..+|.++.    ....|.+++++++++|+++++.+.+.|++. +  ++.+..|+||||+
T Consensus       274 ~~~~~~~~~~~~~~~~~q~~~~~~l~~~~----~~~~~~~~~~~~r~~~~~rr~~l~~~L~~~~~~~~~~~~~p~gg~~~  349 (396)
T PRK09257        274 QLKATIRTNYSNPPAHGAAIVATILNDPE----LRAEWEAELEEMRERIKAMRQLLVEALKAKGPSRDFDFIARQRGMFS  349 (396)
T ss_pred             HHHHHhhhhcCCCcHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccceEEE
Confidence            4434333 445678999999999997532    222356778889999999999999999987 2  3788899999999


Q ss_pred             ecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec-CCcCcHHHHHHHHHHHH
Q 009517          451 FPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-PQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~~~~l~~~l  524 (533)
                      |++++                 ..++.++++++||++.|       .+    ||+++ .++++|++++++|++++
T Consensus       350 w~~l~-----------------~~~~~~l~~~~~V~~~p-------~~----ri~~~~~~~~~i~~~~~~i~~~~  396 (396)
T PRK09257        350 YSGLT-----------------PEQVDRLREEFGVYAVG-------SG----RINVAGLNESNIDYVAEAIAAVL  396 (396)
T ss_pred             ecCCC-----------------HHHHHHHHHcCCEEEcC-------CC----eEEEeeCCHHHHHHHHHHHHhhC
Confidence            97653                 12356788999999987       22    99997 89999999999998753

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=100.00  E-value=3.1e-47  Score=395.02  Aligned_cols=362  Identities=22%  Similarity=0.292  Sum_probs=272.7

Q ss_pred             cceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHH
Q 009517           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (533)
Q Consensus        97 ~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~ai  176 (533)
                      .++|+|++|+|++                      +        |++.+.++.+.+..     . .|+++.|..++++++
T Consensus        94 ~~~i~l~~g~p~~----------------------~--------~~~~~~~~~~~~~~-----~-~Y~~p~g~~~~~e~i  137 (521)
T TIGR03801        94 RDIISYVIDQLGF----------------------D--------PDAFLYEMCDGIIG-----D-NYPVPDRMLPHSEKI  137 (521)
T ss_pred             HHHHhhcCCCCCC----------------------C--------CCHHHHHHHHHhhc-----C-CCCCCCCCHHHHHHH
Confidence            4589999999986                      2        34556666665532     2 598777888888888


Q ss_pred             HH-HHHhhcCCC-CCCC--CEEEcCChHHHHHHHHHH-----hccCCCCeEEEcCCcCcchHHHHHHh--CCeEEEEecC
Q 009517          177 AA-GIEARDGFP-ADPN--DIFLTDGASPAVHMMMQL-----LIRSENDGILCPIPQYPLYSASIALH--GGTLVPYYLD  245 (533)
Q Consensus       177 a~-~~~~~~g~~-~~~~--~i~~t~G~~~al~~~~~~-----l~~~~gd~Vlv~~p~~~~~~~~~~~~--g~~~~~v~~~  245 (533)
                      ++ ++.+.++.. ..++  +|++|+|+++|+..++.+     ++ +|||+|++++|+|+.|..++...  |.+++.++.+
T Consensus       138 v~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~~~~l~~~~ll-~pGD~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~~  216 (521)
T TIGR03801       138 VHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYIFDSLKANELL-KKGDKIALMTPIFTPYLEIPELPRYDFEVVRIKAD  216 (521)
T ss_pred             HHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhHhhcC-CCCCEEEEeCCCcHHHHHHHHHhcCCcEEEEeecc
Confidence            74 656554433 3334  899999999999999887     56 89999999999999999998776  6788888886


Q ss_pred             CCCC-----CCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHc--CCEEEEcccccccccc
Q 009517          246 EATG-----WGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKE--GLVLLADEVYQENVYV  318 (533)
Q Consensus       246 ~~~~-----~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~--~~~lI~De~y~~~~~~  318 (533)
                      +.++     |.+|++++++++++      ++|+|+++|||||||.++|.+++++|+++|++|  +++||+||+|..|.+ 
T Consensus       217 ~~~~~g~~~~~~d~~~l~~~~~~------~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~-  289 (521)
T TIGR03801       217 EMTEDGTHTWQYPDKELEKLRDP------SIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVD-  289 (521)
T ss_pred             cccccccccCCCCHHHHHHhcCC------CCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcc-
Confidence            5443     99999999987765      899999999999999999999999999999987  899999999999764 


Q ss_pred             CCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHH-----HH--------HHH---------
Q 009517          319 PEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAE-----VR--------EQI---------  376 (533)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~-----~~--------~~l---------  376 (533)
                         .+.++...       .++ ++|++.||||.| |++|||+||+++   +++     ++        +.+         
T Consensus       290 ---~~~sl~~~-------~~~-~vI~v~SfSK~f-g~~G~RlG~i~~---~~~~v~d~li~~lp~~~~~~l~~ry~~~~~  354 (521)
T TIGR03801       290 ---DFRSLFAE-------LPY-NTIGVYSFSKYF-GATGWRLGTIAL---HKDNIFDKLIAELPEEKKKELDKRYSSLTT  354 (521)
T ss_pred             ---cccchhhh-------CCC-CEEEEEcchhhc-cCchhhhhhhhc---CchHHHHHHHHhccHHHHHHHhhhhccccC
Confidence               13344332       233 689999999999 899999999998   433     22        222         


Q ss_pred             ---------------HHhhh-ccccCChHHHH-----HHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009517          377 ---------------YKVAS-VNLCSNISGQI-----LASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNS  435 (533)
Q Consensus       377 ---------------~~~~~-~~~~~~~~~q~-----a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  435 (533)
                                     .++.. .+.+.+.+.|.     ++.++|+..          ....+.+++.+++|++.+.+.| .
T Consensus       355 ~p~~~~fidr~vadsr~v~~~~~~g~s~p~Q~q~al~a~~all~~~----------~~y~~~~~~~~~~R~~~l~~~L-g  423 (521)
T TIGR03801       355 EPRKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALMDKE----------NAYKAETKDICRRREKLLFRGL-G  423 (521)
T ss_pred             ChhhhhhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhccc----------hhHHHHHHHHHHHHHHHHHHhc-C
Confidence                           22332 55677777776     344555432          1345678889999999999998 2


Q ss_pred             CCCceEecCCceeEEecccCCCHHHH---HHHH-hcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec-CCc
Q 009517          436 LEGITCNKAEGAMYLFPRIQLPEKAI---KAAE-AEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-PQE  510 (533)
Q Consensus       436 ~~g~~~~~~~gg~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-~~~  510 (533)
                      + .+...+++|+||+|++++.-....   +-.. .....++.+++.+++++.||.+.||..|+..  .+++|||++ .++
T Consensus       424 ~-~~~~~~~~g~~Y~~~di~~~~~~~~~~~f~~~l~~~~~~~~~~~~L~~e~gV~v~PG~~Fg~~--~~~vRisla~l~~  500 (521)
T TIGR03801       424 L-PLQEDPNDVAYYTLIDLEEWAEKNYGEEFSSYLKKNYSPVDVLFRLAEETGIVLLPGGGFGGP--EWSVRVSLANLNE  500 (521)
T ss_pred             C-CCcCCCCCeEEEEEeehHHHHHHhcchHHHHHHhccCCHHHHHHHHHHhCCEEEeCchhcCCC--CCeEEEEecCCCH
Confidence            2 233467999999998775111000   0000 0011246788899999999999999999853  348999998 788


Q ss_pred             CcHHHHHHHHHHHHHHHHHHh
Q 009517          511 DKIPAIVTRLTDFHKNFMDKF  531 (533)
Q Consensus       511 e~i~~~~~~l~~~l~~~~~~~  531 (533)
                      +++.++.++|+++++++.++|
T Consensus       501 ~~~~~~~~rl~~~~~~~~~~~  521 (521)
T TIGR03801       501 YDYAEIGRAIRKILDEYYEAW  521 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHhC
Confidence            899999999999999998876

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>PLN02397 aspartate transaminase

Probab=100.00  E-value=2.7e-46  Score=387.52  Aligned_cols=321  Identities=18%  Similarity=0.210  Sum_probs=251.0

Q ss_pred             ccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCE-----EEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHH
Q 009517          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDI-----FLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL  234 (533)
Q Consensus       160 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i-----~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~  234 (533)
                      ..+|++..|.++||+++++++.+.++.....++|     +.++|+.+ +...+..++ .|||+|++++|+|+.|..+++.
T Consensus        84 ~~~Y~~~~G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~-l~~~~~~~~-~pGd~Vlv~~P~y~~y~~~~~~  161 (423)
T PLN02397         84 NKEYLPIEGLAEFNKLSAKLAYGADSPAIKENRVATVQCLSGTGSLR-LGAEFLARF-YPGSTIYIPNPTWGNHHNIFRD  161 (423)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHcCCCCchhhcCeeEeeecccchHHHH-HHHHHHHHh-CCCCEEEEeCCCchhHHHHHHH
Confidence            5589999999999999999997655443334443     33444433 334444444 5999999999999999999999


Q ss_pred             hCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEcccccc
Q 009517          235 HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE  314 (533)
Q Consensus       235 ~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~  314 (533)
                      +|++++.+++..+++|++|++.+++.+++.   .++++++++++||||||.+++.+++++|+++|++||++||+||+|.+
T Consensus       162 ~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~---~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~  238 (423)
T PLN02397        162 AGVPVRTYRYYDPKTRGLDFDGLLEDLKAA---PDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQG  238 (423)
T ss_pred             cCCeEEEeecccCcCCccCHHHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCC
Confidence            999999999854446899999999888742   12678888889999999999999999999999999999999999999


Q ss_pred             ccccCC-CCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHH----HHHHhhh-ccccCCh
Q 009517          315 NVYVPE-KKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVRE----QIYKVAS-VNLCSNI  388 (533)
Q Consensus       315 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~----~l~~~~~-~~~~~~~  388 (533)
                      |.|++. .+..++..+. .     ...++|+++||||+| +|+|||+||+++...+++++.    .+.+... ..++++.
T Consensus       239 l~~~~~~~~~~~~~~~~-~-----~~~~vI~~~SfSK~~-~~~G~RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (423)
T PLN02397        239 FASGDLDADAQSVRMFV-E-----DGHEILVAQSYAKNM-GLYGERVGALSVVCKSADVAVRVKSQLKLIARPMYSNPPI  311 (423)
T ss_pred             ccCCchhhhhHHHHHHH-h-----cCCcEEEEEECcccC-CCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcH
Confidence            998541 1223332321 1     123589999999999 899999999863223565544    3334433 4457788


Q ss_pred             HHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----ceEecCCceeEEecccCCCHHHHHHH
Q 009517          389 SGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEG----ITCNKAEGAMYLFPRIQLPEKAIKAA  464 (533)
Q Consensus       389 ~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g----~~~~~~~gg~~~~~~~~~~~~~~~~~  464 (533)
                      +.|.++..+|+++    ...+.|.++++.+++.++++++.+.+.|+++ |    |.++.|+||||+|++++         
T Consensus       312 ~~q~~~~~~L~~~----~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~-~~~~~~~~~~p~gg~fl~~~l~---------  377 (423)
T PLN02397        312 HGASIVATILGDP----ELFSEWTKELKGMADRIISMRQKLYDALEAR-GSPGDWSHITKQIGMFSFTGLN---------  377 (423)
T ss_pred             HHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCcccCCceEEEecCCC---------
Confidence            9999999988742    1234566668889999999999999999998 6    88889999999997653         


Q ss_pred             HhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec-CCcCcHHHHHHHHHHHHH
Q 009517          465 EAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-PQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       465 ~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~~~~l~~~l~  525 (533)
                              ..++.+|++++||++.+       .+    ||+++ .+.++|++++++|+++++
T Consensus       378 --------~~~~~~Ll~~~~V~v~~-------~~----Ri~~~~~~~~~i~~~~~~i~~~~~  420 (423)
T PLN02397        378 --------KEQVDRMTKEYHIYMTR-------DG----RISMAGLSSKNVPYLADAIHAVVT  420 (423)
T ss_pred             --------HHHHHHHHHhCCEEECC-------CC----eEEEeeCCHHHHHHHHHHHHHHHh
Confidence                    23678999999999973       22    99997 999999999999999975

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=100.00  E-value=8e-46  Score=382.90  Aligned_cols=376  Identities=23%  Similarity=0.324  Sum_probs=285.3

Q ss_pred             CcccccCccc-cccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCC
Q 009517           62 NPKVLKCEYA-VRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLF  140 (533)
Q Consensus        62 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~  140 (533)
                      |+.+..++++ ++..+..+..+...+.       |..++|+|+.|+|..                      +.       
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~l~~~~~~~----------------------~~-------   47 (402)
T TIGR03542         4 NPHFLKLKSSYLFSEINRRVNEFRKKH-------PSADIIRLGIGDTTQ----------------------PL-------   47 (402)
T ss_pred             CCCccccCcchHHHHHHHHHHHHHhcc-------CCCCeEEcCCCCCCC----------------------CC-------
Confidence            4566666654 4444555555554321       123499999999874                      22       


Q ss_pred             CHHHHHHHHHHHhcCCC-CCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEE
Q 009517          141 SADSIERAWQILDQIPG-RATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGIL  219 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~-~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vl  219 (533)
                      |+.+.+++.+.+.+... .....|.|..|.++||+++|+++.+. +  +++++|++|+|+++++..++ .++ .+||+|+
T Consensus        48 ~~~v~~~~~~~~~~~~~~~~~~~Y~p~~g~~~lr~aia~~~~~~-~--~~~d~I~it~Ga~~al~~l~-~l~-~~gd~Vl  122 (402)
T TIGR03542        48 PASVIEAFHNAVDELASEETFRGYGPEQGYPFLREAIAENDYRG-R--IDPEEIFISDGAKCDVFRLQ-SLF-GSDNTVA  122 (402)
T ss_pred             CHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHhc-C--CCHHHEEECCCcHHHHHHHH-Hhc-CCCCEEE
Confidence            67778887777765311 02356999999999999999986432 2  78899999999999999865 455 6899999


Q ss_pred             EcCCcCcchHHHHHHhCC-----------eEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCC
Q 009517          220 CPIPQYPLYSASIALHGG-----------TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLA  288 (533)
Q Consensus       220 v~~p~~~~~~~~~~~~g~-----------~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s  288 (533)
                      +++|+|..|..+++..|+           +++.++++++++|.+|++..     .      ++++|++++||||||.++|
T Consensus       123 v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-----~------~~~~i~l~nP~NPTG~~~s  191 (402)
T TIGR03542       123 VQDPVYPAYVDSNVMAGRAGVLDDDGRYSKITYLPCTKENNFIPDLPEE-----P------KIDIIYLCSPNNPTGTVLT  191 (402)
T ss_pred             EeCCCCcchHHHHHHcCCccccccccccceEEEeecchhhCCCCCcccc-----C------CceEEEEeCCCCCCCccCC
Confidence            999999999999999999           99999987666676664321     2      6899999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecC
Q 009517          289 EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGF  368 (533)
Q Consensus       289 ~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~  368 (533)
                      .+++++|+++|++||++||+||+|.+|.+++. ...++..+ .     ....++|+++||||.| |+||+|+||+++   
T Consensus       192 ~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~-~~~~~~~~-~-----~~~~~vi~~~SfSK~~-g~pGlRiG~~i~---  260 (402)
T TIGR03542       192 KEQLKELVDYANEHGSLILFDAAYSAFISDPS-LPHSIFEI-P-----GAKECAIEFRSFSKTA-GFTGVRLGWTVV---  260 (402)
T ss_pred             HHHHHHHHHHHHHcCeEEEEEchhhhhccCCC-CCcchhhC-C-----CCcccEEEEecCcccc-CCCCcceEEEEe---
Confidence            99999999999999999999999999887542 22233222 1     1123689999999999 899999999998   


Q ss_pred             CHHHH--------HHHHHhh-hccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 009517          369 SAEVR--------EQIYKVA-SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGI  439 (533)
Q Consensus       369 ~~~~~--------~~l~~~~-~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~  439 (533)
                      +++++        ..+.... ....+++.+.|.++..++.+..        + .+..+.++.++++++.+.+.|++. |+
T Consensus       261 ~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~--------~-~~~~~~~~~~~~~~~~~~~~L~~~-~~  330 (402)
T TIGR03542       261 PKELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGEG--------L-QPILEAISYYMENARILRKALEAA-GF  330 (402)
T ss_pred             cHHHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCcc--------h-hHHHHHHHHHHHHHHHHHHHHHhc-Cc
Confidence            88776        2222222 2334678899999888886432        1 234556678999999999999987 88


Q ss_pred             eEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHH
Q 009517          440 TCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTR  519 (533)
Q Consensus       440 ~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~  519 (533)
                      .+..|.+|+|+|++++..            .++..++..+++++||.+.||+.|+ ..+.++|||+++.+++++++++++
T Consensus       331 ~~~~~~~~~f~~v~l~~~------------~~~~~l~~~l~~~~gv~v~pg~~f~-~~~~~~iRis~~~~~~~l~~~l~~  397 (402)
T TIGR03542       331 KVYGGEHAPYLWVKTPEG------------ISSWDFFDFLLYQYHVVGTPGSGFG-PSGEGFVRFSAFGKRENIVEACER  397 (402)
T ss_pred             eecCCCceeEEEEECCCC------------CCHHHHHHHHHHhCCEEEeCchhhC-CCCCCEEEEEecCCHHHHHHHHHH
Confidence            888889999999776421            1245566777878899999999997 344569999987788899999999


Q ss_pred             HHHH
Q 009517          520 LTDF  523 (533)
Q Consensus       520 l~~~  523 (533)
                      |+++
T Consensus       398 l~~~  401 (402)
T TIGR03542       398 IKEA  401 (402)
T ss_pred             HHhh
Confidence            9875

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=100.00  E-value=1.5e-45  Score=376.36  Aligned_cols=332  Identities=23%  Similarity=0.352  Sum_probs=267.4

Q ss_pred             eeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHH
Q 009517           99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA  178 (533)
Q Consensus        99 ~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~  178 (533)
                      +++|+.|+|..                      +.       ++.+.+++.+...      ...|++..|.++||+++|+
T Consensus        29 ~i~l~~~~p~~----------------------~~-------~~~~~~~~~~~~~------~~~Y~~~~G~~~lr~~ia~   73 (364)
T PRK07865         29 IVDLSVGTPVD----------------------PV-------PPVIQEALAAAAD------APGYPTTAGTPELREAIVG   73 (364)
T ss_pred             EEEcCCCCCCC----------------------CC-------CHHHHHHHHHHHh------hCCCCCccCCHHHHHHHHH
Confidence            89999999863                      11       4555666554332      2479999999999999999


Q ss_pred             HHHhhcCCC-CCCCCEEEcCChHHHHHHHHHHh-ccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHH
Q 009517          179 GIEARDGFP-ADPNDIFLTDGASPAVHMMMQLL-IRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE  256 (533)
Q Consensus       179 ~~~~~~g~~-~~~~~i~~t~G~~~al~~~~~~l-~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~  256 (533)
                      ++.+++|++ +++++|++|+|+++++..++..+ + ++||+|++++|+|+.|...++..|++++.++         ++++
T Consensus        74 ~l~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~~-~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~---------~~~~  143 (364)
T PRK07865         74 WLARRRGVTGLDPAAVLPVIGSKELVAWLPTLLGL-GPGDVVVIPELAYPTYEVGARLAGATVVRAD---------SLTE  143 (364)
T ss_pred             HHHHHcCCCCCCcccEEEccChHHHHHHHHHHHcC-CCCCEEEECCCCcccHHHHHHhcCCEEEecC---------Chhh
Confidence            999988987 89999999999999999988887 6 7999999999999999999999999988874         2233


Q ss_pred             HHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCC
Q 009517          257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG  336 (533)
Q Consensus       257 l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~  336 (533)
                      ++.   .      ++++|++++||||||.+++.+++++|+++|+++|++||+||+|.++.+++.  ..+.  +..++.+ 
T Consensus       144 l~~---~------~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~--~~~~--~~~~~~~-  209 (364)
T PRK07865        144 LGP---Q------RPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAE--PVSI--LDPRVCG-  209 (364)
T ss_pred             CCc---c------cceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCC--CCcc--ccccccC-
Confidence            322   2      689999999999999999999999999999999999999999999888542  1221  1111100 


Q ss_pred             CCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHH
Q 009517          337 EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAER  415 (533)
Q Consensus       337 ~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~  415 (533)
                      ....++|+++||||.+ |+||+|+||+++   ++++++.+..... ..++.+.+.|.++..+|.+.           +++
T Consensus       210 ~~~~~~i~~~S~SK~~-~~~GlRiG~i~~---~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-----------~~~  274 (364)
T PRK07865        210 GDHTGLLAVHSLSKQS-NLAGYRAGFVAG---DPALVAELLEVRKHAGMMVPAPVQAAMVAALGDD-----------AHV  274 (364)
T ss_pred             CccceEEEEeechhcc-CCCceeeEEEec---CHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCH-----------HHH
Confidence            1224689999999999 789999999987   9999999887654 55778999999999888631           345


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCC
Q 009517          416 DGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ  495 (533)
Q Consensus       416 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~  495 (533)
                      +++++.++++++.+.+.|++. |+.+..|+||+|+|+++..              +...++ +.|+++||.+.||..|+.
T Consensus       275 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~--------------~~~~~~-~~l~~~gv~v~pg~~f~~  338 (364)
T PRK07865        275 REQRERYARRRAVLRPALEAA-GFRVDHSEAGLYLWATRGE--------------DCWDTV-AWLAERGILVAPGDFYGP  338 (364)
T ss_pred             HHHHHHHHHHHHHHHHHHHHc-CCcccCCCccEEEEEeCCC--------------CHHHHH-HHHHHCCEEEeCccccCc
Confidence            667888999999999999987 8888899999999976531              122333 556789999999998873


Q ss_pred             CCCCceEEEEecCCcCcHHHHHHHHH
Q 009517          496 VPGTWHFRCTILPQEDKIPAIVTRLT  521 (533)
Q Consensus       496 ~~g~~~iRis~~~~~e~i~~~~~~l~  521 (533)
                       .+.++|||+++.+++++++++++|+
T Consensus       339 -~~~~~iRi~~~~~~~~~~~~~~~l~  363 (364)
T PRK07865        339 -AGAQHVRVALTATDERIAAAVERLA  363 (364)
T ss_pred             -CCCCEEEEEecCCHHHHHHHHHHhh
Confidence             4456999999877889999998885

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=100.00  E-value=3.2e-45  Score=372.61  Aligned_cols=352  Identities=23%  Similarity=0.332  Sum_probs=280.6

Q ss_pred             ccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHH
Q 009517           69 EYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERA  148 (533)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~  148 (533)
                      ++.++..++..+.+.+..+++         +++|+.|+|..                      +.       ++.+.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~---------~i~l~~~~p~~----------------------~~-------~~~~~~~~   43 (357)
T TIGR03539         2 PDFPWDSLAPYKAKAASHPDG---------IVDLSVGTPVD----------------------PV-------PPLIRAAL   43 (357)
T ss_pred             CcchHHHHHHHHHHhhhCCCC---------eEEccCCCCCC----------------------CC-------CHHHHHHH
Confidence            456777788888888765555         99999999864                      21       45566665


Q ss_pred             HHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCC-CCCCCEEEcCChHHHHHHHHHHh-ccCCCCeEEEcCCcCc
Q 009517          149 WQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFP-ADPNDIFLTDGASPAVHMMMQLL-IRSENDGILCPIPQYP  226 (533)
Q Consensus       149 ~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~-~~~~~i~~t~G~~~al~~~~~~l-~~~~gd~Vlv~~p~~~  226 (533)
                      .+...      ...|++..|.++||+++++++.+++|++ +++++|++|+|+++++..++..+ . ++||.|++++|+|+
T Consensus        44 ~~~~~------~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~~-~~gd~Vl~~~p~y~  116 (357)
T TIGR03539        44 AAAAD------APGYPQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAWLPTLLGL-GPGDTVVIPELAYP  116 (357)
T ss_pred             HHHHh------hCCCCcccCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHHHHHHHHHcC-CCCCEEEECCCCcH
Confidence            54332      3579999999999999999999988987 99999999999999999998887 6 79999999999999


Q ss_pred             chHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEE
Q 009517          227 LYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVL  306 (533)
Q Consensus       227 ~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~l  306 (533)
                      .|...++..|++++.++         |++.+..   .      ++++|++++|+||||.++|.+++++|+++|++||++|
T Consensus       117 ~~~~~~~~~g~~~~~v~---------~~~~l~~---~------~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~i  178 (357)
T TIGR03539       117 TYEVGALLAGATPVAAD---------DPTELDP---V------GPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVV  178 (357)
T ss_pred             HHHHHHHhcCCEEeccC---------ChhhcCc---c------CccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEE
Confidence            99999999999988763         2333221   1      6899999999999999999999999999999999999


Q ss_pred             EEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-cccc
Q 009517          307 LADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLC  385 (533)
Q Consensus       307 I~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~  385 (533)
                      |+||+|.++.|++. + .+  .+.....+ ....++|+++||||.+ |++|+|+||+++   ++++++.+.+... ..++
T Consensus       179 i~De~y~~~~~~~~-~-~~--~~~~~~~~-~~~~~vi~~~S~SK~~-~~~G~R~G~~i~---~~~~~~~~~~~~~~~~~~  249 (357)
T TIGR03539       179 ASDECYLELGWEGR-P-VS--ILDPRVCG-GDHTGLLAVHSLSKRS-NLAGYRAGFVAG---DPALVAELLTVRKHAGLM  249 (357)
T ss_pred             EEecchhhhccCCC-C-cc--ceecccCC-CccccEEEEecccccc-CCCceeEEEEec---CHHHHHHHHHHHhhcccC
Confidence            99999999888542 2 11  11111000 0123589999999998 889999999997   8999998887765 5678


Q ss_pred             CChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHH
Q 009517          386 SNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAE  465 (533)
Q Consensus       386 ~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~  465 (533)
                      ++.++|.++..+|.+.           .+.+.+++.++++++.+.+.|++. |+.+..|+||+|+|++++.         
T Consensus       250 ~~~~~q~~~~~~l~~~-----------~~~~~~~~~~~~~~~~~~~~L~~~-g~~~~~p~~~~~~~~~~~~---------  308 (357)
T TIGR03539       250 VPAPVQAAMVAALGDD-----------GHVAEQKARYAARRAQLKPALEKA-GFRIDHSEAGLYLWATRGE---------  308 (357)
T ss_pred             CCHHHHHHHHHHcCCH-----------HHHHHHHHHHHHHHHHHHHHHHHc-CCCCcCCCccEEEEEECCC---------
Confidence            8999999999888631           334667888999999999999987 8888899999999976531         


Q ss_pred             hcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHH
Q 009517          466 AEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRL  520 (533)
Q Consensus       466 ~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l  520 (533)
                           +...+. +.|+++||.+.||..|+ ..+.++|||+++.++++|++++++|
T Consensus       309 -----~~~~~~-~~l~~~gV~v~pg~~f~-~~~~~~iRis~~~~~~~i~~~~~~l  356 (357)
T TIGR03539       309 -----DAWDTV-DRLAELGILVAPGDFYG-PAGSQHVRVALTATDERIAAAVARL  356 (357)
T ss_pred             -----CHHHHH-HHHHhCCEEECCccccC-CCCCCeEEEEecCCHHHHHHHHHhh
Confidence                 123333 45678899999999887 3455699999997788899998876

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=100.00  E-value=4.7e-46  Score=380.44  Aligned_cols=357  Identities=27%  Similarity=0.464  Sum_probs=294.4

Q ss_pred             eeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHH-HHhcCCCCCccccCCCcccHHHHHHHH
Q 009517           99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQ-ILDQIPGRATGAYSHSQGIKGLRDTIA  177 (533)
Q Consensus        99 ~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~-~~~~~~~~~~~~Y~~~~G~~~lr~aia  177 (533)
                      +|||+.|++....+.|.                         ++++++++.+ .....   ....|++..|.++||+++|
T Consensus         3 ~I~l~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~---~~~~Y~~~~g~~~lr~~ia   54 (363)
T PF00155_consen    3 VINLGSNAPLLLSQNPP-------------------------PPAAIKAAIRGAATSS---SFLGYPPPQGYPELREAIA   54 (363)
T ss_dssp             EEESSSSSTSSTTSSHH-------------------------HHHHHHHHHHHHHHHT---GCTSSTCTTHHHHHHHHHH
T ss_pred             EEEEECCCCCCcccccc-------------------------hHHHHHHHHHHhhccc---ccccCCCchhhHHHHHHHH
Confidence            89999999986333221                         4667777665 22221   4789999999999999999


Q ss_pred             HHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHh-ccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHH
Q 009517          178 AGIEARDGFPADPN-DIFLTDGASPAVHMMMQLL-IRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETS  255 (533)
Q Consensus       178 ~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l-~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~  255 (533)
                      +++++.+|.+.+++ +|++++|+++++..++..+ . ++||+|++++|+|+.|...++..|.+++.++++.+++|++|++
T Consensus        55 ~~~~~~~~~~~~~~~~i~~~~G~~~~~~~~~~~~~~-~~~~~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~  133 (363)
T PF00155_consen   55 DFLGRRYGVPVDPEANILVTSGAQAALFLLLRLLKI-NPGDTVLVPDPCYPSYIEAARLLGAEVIPVPLDSENDFHLDPE  133 (363)
T ss_dssp             HHHHHHHTHHTTGGEGEEEESHHHHHHHHHHHHHHS-STTSEEEEEESSSTHHHHHHHHTTSEEEEEEEEETTTTEETHH
T ss_pred             HHhhhccCcccccceEEEEecccccchhhhhhcccc-cccccceecCCccccccccccccCceeeecccccccccccccc
Confidence            99998889999999 9999999999999999998 6 7899999999999999999999999999999887788999999


Q ss_pred             HHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCC
Q 009517          256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY  335 (533)
Q Consensus       256 ~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~  335 (533)
                      .|++.+++...++.++++|++++||||||.+++.+++++|+++|++||++||+||+|.++.++.. .+.+.   ...+  
T Consensus       134 ~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~---~~~~--  207 (363)
T PF00155_consen  134 ALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDP-DFGPI---RSLL--  207 (363)
T ss_dssp             HHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSS-HTHHH---HGHH--
T ss_pred             ccccccccccccccccceeeecccccccccccccccccchhhhhcccccceeeeeceeccccCCC-ccCcc---cccc--
Confidence            99999988544433578999999999999999999999999999999999999999999888643 22221   1222  


Q ss_pred             CCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHH
Q 009517          336 GEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAER  415 (533)
Q Consensus       336 ~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~  415 (533)
                       +.+.++|++.||||+| |++|+|+||+++   ++++++.+......... +.+.|.++..++.+.       ..+.+++
T Consensus       208 -~~~~~vi~~~S~SK~~-g~~GlRvG~i~~---~~~~~~~l~~~~~~~~~-~~~~~~~~~~~l~~~-------~~~~~~~  274 (363)
T PF00155_consen  208 -DEDDNVIVVGSLSKSF-GLPGLRVGYIVA---PPELIERLRRFQRSGLS-SSPMQAAAAAALSDP-------ELVEKWL  274 (363)
T ss_dssp             -TTTSTEEEEEESTTTT-TSGGGTEEEEEE---EHHHHHHHHHHHHHTTS-SHHHHHHHHHHHHHH-------HHHHHHH
T ss_pred             -cccccceeeeeccccc-cccccccccccc---hhhhhhhhhhccccccc-cchhhHHHHHhhhcc-------ccccccc
Confidence             2333489999999999 899999999998   99999999887754333 888888888877531       1233477


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCC
Q 009517          416 DGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ  495 (533)
Q Consensus       416 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~  495 (533)
                      ++++++++++++.+.+.|++. |+.+..+++|+|+|+.++..             ++..++++++++.||.+.||..|+.
T Consensus       275 ~~~~~~l~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~-------------~~~~l~~~L~~~~gi~v~pg~~~~~  340 (363)
T PF00155_consen  275 EELRERLRENRDLLREALEEI-GITVLPPEAGFFLWVRLDPN-------------DAEELAQELLEEYGILVRPGSYFGV  340 (363)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT-TSEEEHHSBSSEEEEEESHH-------------HHHHHHHHHHHHHTEEEEEGGGGTS
T ss_pred             ccchhhHHHHHHHHHHHHHHh-hhheeeccCccEEEEEcccc-------------hHHHHHHHHHHhCCEEEEecCCCCC
Confidence            889999999999999999998 99999999999999765511             2456677888777999999999986


Q ss_pred             CCCCceEEEEe-cCCcCcHHHHHHHH
Q 009517          496 VPGTWHFRCTI-LPQEDKIPAIVTRL  520 (533)
Q Consensus       496 ~~g~~~iRis~-~~~~e~i~~~~~~l  520 (533)
                         .++|||++ ..+++++++++++|
T Consensus       341 ---~~~iRi~~a~~~~e~~~~~~~~l  363 (363)
T PF00155_consen  341 ---PGYIRISLASHSEEDLEEALERL  363 (363)
T ss_dssp             ---TTEEEEEGGCSCHHHHHHHHHHH
T ss_pred             ---CCEEEEEeccCCHHHHHHHHhhC
Confidence               34999999 58999999999886

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>PRK06836 aspartate aminotransferase; Provisional

Probab=100.00  E-value=2e-44  Score=371.46  Aligned_cols=344  Identities=24%  Similarity=0.401  Sum_probs=281.1

Q ss_pred             eeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHH
Q 009517           99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA  178 (533)
Q Consensus        99 ~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~  178 (533)
                      +++|+.|+|+.                      +.       |+.+.+++.+.+..... ....|.+..|.+++|+++++
T Consensus        35 ~~~l~~g~p~~----------------------~~-------~~~v~~a~~~~~~~~~~-~~~~y~~~~g~~~lr~~ia~   84 (394)
T PRK06836         35 VFDFSLGNPSV----------------------PP-------PAAVKEALRELAEEEDP-GLHGYMPNAGYPEVREAIAE   84 (394)
T ss_pred             eEEecCcCCCC----------------------CC-------CHHHHHHHHHHHhcCCc-CcccCCCCCCCHHHHHHHHH
Confidence            89999999864                      11       56777777666654222 25779999999999999999


Q ss_pred             HHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHH
Q 009517          179 GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVK  258 (533)
Q Consensus       179 ~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~  258 (533)
                      ++++.++..+++++|++|+|+++++..+++.++ ++||+|++++|+|..|..+++..|++++.++++++ +|++|+++++
T Consensus        85 ~l~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~-~~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~~~~-~~~~d~~~l~  162 (394)
T PRK06836         85 SLNRRFGTPLTADHIVMTCGAAGALNVALKAIL-NPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTDTD-TFQPDLDALE  162 (394)
T ss_pred             HHHHHhCCCCCcCcEEEeCChHHHHHHHHHHhc-CCCCEEEEcCCCCccHHHHHHHcCCEEEEEecCCc-cCcCCHHHHH
Confidence            999988888899999999999999999999998 89999999999999999999999999999999764 5899999999


Q ss_pred             HHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHH------cCCEEEEccccccccccCCCCcccHHHHHhh
Q 009517          259 KQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK------EGLVLLADEVYQENVYVPEKKFHSFKKVSRS  332 (533)
Q Consensus       259 ~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~------~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~  332 (533)
                      +++++      ++++|++++||||||.++|.+++++|+++|++      ||++||+||+|.++.|++. +..++..   .
T Consensus       163 ~~~~~------~~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~---~  232 (394)
T PRK06836        163 AAITP------KTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGA-EVPYIFK---Y  232 (394)
T ss_pred             hhcCc------CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCC-CCCChHH---c
Confidence            99976      79999999999999999999999999999999      8999999999999988653 2233222   1


Q ss_pred             cCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHH---HHH---hhh--ccccCChHHHHHHHHHcCCCCCC
Q 009517          333 MGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQ---IYK---VAS--VNLCSNISGQILASLVMSPPKVG  404 (533)
Q Consensus       333 ~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~---l~~---~~~--~~~~~~~~~q~a~~~~L~~~~~~  404 (533)
                            ..++|+++||||.| |+||+|+||+++   ++++.+.   +..   ...  ...+++.+.|.++..++.+.   
T Consensus       233 ------~~~~i~~~S~SK~~-~~pGlRiG~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---  299 (394)
T PRK06836        233 ------YDNSIVVYSFSKSL-SLPGERIGYIAV---NPEMEDADDLVAALVFANRILGFVNAPALMQRVVAKCLDAT---  299 (394)
T ss_pred             ------cCcEEEEecchhhc-cCcceeeEEEec---CHHHhhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhCCh---
Confidence                  12589999999999 889999999998   6665332   111   122  12467888999998888631   


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccc
Q 009517          405 DESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATG  484 (533)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g  484 (533)
                                  ..++.++++++.+.+.|+++ |+.+..|+||||+|+.++..             +...++ ..|+++|
T Consensus       300 ------------~~~~~~~~~r~~l~~~L~~~-g~~~~~~~gg~~~~~~~~~~-------------~~~~~~-~~l~~~g  352 (394)
T PRK06836        300 ------------VDVSIYKRNRDLLYDGLTEL-GFECVKPQGAFYLFPKSPEE-------------DDVAFC-EKAKKHN  352 (394)
T ss_pred             ------------HHHHHHHHHHHHHHHHHHhC-CCEeecCCceEEEEEeCCCC-------------CHHHHH-HHHHhCC
Confidence                        12456788899999999998 89999999999999765421             234444 5567789


Q ss_pred             eEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHHHH
Q 009517          485 IVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       485 V~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~  527 (533)
                      |.+.||..|+. .  ++|||+++.+++++++++++|+++++++
T Consensus       353 v~v~~g~~f~~-~--~~iRi~~~~~~~~~~~~i~~l~~~l~~~  392 (394)
T PRK06836        353 LLLVPGSGFGC-P--GYFRLSYCVDTETIERSLPAFEKLAKEY  392 (394)
T ss_pred             EEEECchhcCC-C--CeEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence            99999999973 3  3999999988899999999999998765

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=100.00  E-value=1.1e-44  Score=376.67  Aligned_cols=327  Identities=20%  Similarity=0.283  Sum_probs=253.6

Q ss_pred             ccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC-----CCCeEEE-cCCcCcchHHHHH
Q 009517          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS-----ENDGILC-PIPQYPLYSASIA  233 (533)
Q Consensus       160 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~-----~gd~Vlv-~~p~~~~~~~~~~  233 (533)
                      ...|++..|.++||++||+++.+++|+.+++++|++|+|+++++.+++++++ +     +||.|++ ++|+|+.|...+.
T Consensus        67 ~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~~al~~~~~~l~-~~~~~~~gd~v~i~~~P~y~~y~~~~~  145 (416)
T PRK09440         67 LGNYDGPQGKDELIEALAALLNERYGWNISPQNIALTNGSQSAFFYLFNLFA-GRRADGSLKKILFPLAPEYIGYADAGL  145 (416)
T ss_pred             cccCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccChHHHHHHHHHHHh-ccccCCCCCeEEEecCCCchhhHHHhh
Confidence            4679999999999999999999989999999999999999999999999997 4     5899999 6999999988665


Q ss_pred             HhCC----eEEEEecCCCC-CCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEE
Q 009517          234 LHGG----TLVPYYLDEAT-GWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLA  308 (533)
Q Consensus       234 ~~g~----~~~~v~~~~~~-~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~  308 (533)
                      ..+.    .+..+++..++ +|++|++.|+  +..      +++++++++||||||.++|.+++++|+++|++||++||+
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~------~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~  217 (416)
T PRK09440        146 EEDLFVSYRPNIELLPEGQFKYHVDFEHLH--IDE------DTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLI  217 (416)
T ss_pred             ccCceeecccccccccccccccCCCHHHcc--cCC------CceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEE
Confidence            4442    22233333221 4789999987  332      689999999999999999999999999999999999999


Q ss_pred             ccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCC
Q 009517          309 DEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSN  387 (533)
Q Consensus       309 De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~  387 (533)
                      ||+|..+..  .   ..+......     .+.++|+++|||| + ++||+|+||+++   ++++++.+..... ...+++
T Consensus       218 De~Y~~~~~--~---~~~~~~~~~-----~~~~vI~~~SfSK-~-~~pGlRiG~~i~---~~~l~~~~~~~~~~~~~~~s  282 (416)
T PRK09440        218 DNAYGPPFP--G---IIFSEATPL-----WNPNIILCMSLSK-L-GLPGVRCGIVIA---DEEIIEALSNMNGIISLAPG  282 (416)
T ss_pred             eCCccccCC--C---cchhhcCcc-----ccCCeEEEecccc-c-CCCcceEEEEeC---CHHHHHHHHHHHHHhccCCC
Confidence            999975321  1   011111111     1346899999999 5 689999999998   9999999988765 456789


Q ss_pred             hHHHHHHHHHcCCCCCCChhHHHHHHHHHH-HHHHHHHHHHHHHHHHhcC-C--CceEecCCceeEEecccCCCHHHHHH
Q 009517          388 ISGQILASLVMSPPKVGDESYESYCAERDG-ILSSLARRAKTLEDAFNSL-E--GITCNKAEGAMYLFPRIQLPEKAIKA  463 (533)
Q Consensus       388 ~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~~-~--g~~~~~~~gg~~~~~~~~~~~~~~~~  463 (533)
                      .+.|.++..+|+++.        +.++..+ +++.|+++++.+++.|.+. +  ++.++.|+||+|+|++++.-      
T Consensus       283 ~~~q~~~~~~l~~~~--------~~~~~~~~~~~~~~~r~~~~~~~L~~~l~~~~~~~~~p~gg~fiw~~~~~~------  348 (416)
T PRK09440        283 RLGPAIAAEMIESGD--------LLRLSETVIRPFYRQKVQLAIALLRRYLPDEPCLIHKPEGAIFLWLWFKDL------  348 (416)
T ss_pred             cHHHHHHHHHhccch--------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCeEEecCCCceEEEEECCCC------
Confidence            999999999997543        3333333 5777888888888888763 3  45677899999999776520      


Q ss_pred             HHhcCCCChHHHHHHHHHccceEEEcCCCCCCCC------CCceEEEEecCCcCcHHHHHHHHHHHHHHHHHH
Q 009517          464 AEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVP------GTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDK  530 (533)
Q Consensus       464 ~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~------g~~~iRis~~~~~e~i~~~~~~l~~~l~~~~~~  530 (533)
                          +. ++..++. .++++||.++||+.|+...      +.++|||+++.+++++++++++|++++++..++
T Consensus       349 ----~~-~~~~~~~-~l~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~~~~~~l~~~i~~l~~~~~~~~~~  415 (416)
T PRK09440        349 ----PI-TTEELYQ-RLKARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYVQDDEEIEKGIAILAEEVEKAYAE  415 (416)
T ss_pred             ----CC-CHHHHHH-HHHHCCEEEechHhhCCCCccccCCcCceEEEEecCCHHHHHHHHHHHHHHHHHHhhc
Confidence                01 2344444 4577899999999995311      135999999877899999999999999876553

>PLN02672 methionine S-methyltransferase

Probab=100.00  E-value=1.1e-44  Score=397.19  Aligned_cols=371  Identities=13%  Similarity=0.198  Sum_probs=284.8

Q ss_pred             ceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHH
Q 009517           98 EILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA  177 (533)
Q Consensus        98 ~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia  177 (533)
                      ++|+|++|+|++                      ++       |+.+++++.+.+...      .|  ..|.+++|++++
T Consensus       698 ~vI~LsinE~d~----------------------pp-------Pp~V~eAi~eal~~~------~~--s~g~pdlr~aLa  740 (1082)
T PLN02672        698 SLIHMDVDESFL----------------------PV-------PSAVKASIFESFVRQ------NI--SESETDPRPSIL  740 (1082)
T ss_pred             CEEEEeCCCCCC----------------------CC-------CHHHHHHHHHHHhhc------CC--CCCChHHHHHHH
Confidence            389999999875                      33       788888888777541      12  345778999999


Q ss_pred             HHHHhhcCCCCCC-CCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHH
Q 009517          178 AGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE  256 (533)
Q Consensus       178 ~~~~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~  256 (533)
                      +++.+++|++.++ ++|++|+|+++++..++++++ ++||+|+++.|+|+.|...++..|++++.+|++++++|.+|++.
T Consensus       741 ~~la~~~Gv~~d~~e~IIvt~Gs~elL~lll~aLl-~pGD~VLVp~PtY~~Y~~~a~~~Ga~vv~Vpl~~e~gf~lD~d~  819 (1082)
T PLN02672        741 QFIKSNYGFPTDSCTEFVYGDTSLALFNKLVLCCV-QEGGTLCFPAGSNGTYVSAAKFLKANFRRIPTKSSDGFKLTAKT  819 (1082)
T ss_pred             HHHHHHhCcCCCCCCEEEEeCCHHHHHHHHHHHHc-CCCCEEEEeCCChHHHHHHHHHcCCEEEEEecccccCCCCCHHH
Confidence            9999999988765 589999999999999999998 89999999999999999999999999999999877789999999


Q ss_pred             HHHHHHHHHhcCCCeeEEEEeCCC-CCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCC-CcccHHHHHhhcC
Q 009517          257 VKKQLEAAKAKGITVRALVVINPG-NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEK-KFHSFKKVSRSMG  334 (533)
Q Consensus       257 l~~~i~~~~~~g~~~~~iil~~p~-NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~-~~~~~~~~~~~~~  334 (533)
                      |++++++.     +.++|++++|| ||||.+++.+++++|+++|++||++||+||+|.++.|++.. ...++......+.
T Consensus       820 Le~al~~~-----~~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~  894 (1082)
T PLN02672        820 LASTLETV-----KKPWVYISGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLK  894 (1082)
T ss_pred             HHHHhccC-----CCCEEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhc
Confidence            99998652     34589999997 99999999999999999999999999999999999996532 1122222222221


Q ss_pred             CCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhccccCChHHHHHHHHHc---CCCCCCChhHHHH
Q 009517          335 YGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVM---SPPKVGDESYESY  411 (533)
Q Consensus       335 ~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~~L---~~~~~~~~~~~~~  411 (533)
                      ...+..+||+++||||.+ +++|||+||+++  .++++++.+.+... ..++....|.++..++   .+.   .   ..|
T Consensus       895 ~~sks~nVIvL~SfSKkf-~lpGLRIGylIa--p~~eLi~~l~~~~~-~s~~~~~~q~Aaaaalall~~~---~---~~~  964 (1082)
T PLN02672        895 SSNPSFAVALLGGLSTEL-LSGGHEFGFLAL--NDSVLIDAFHSAPG-LSRPHSTLKYTIKKLLGLKNQK---S---SDL  964 (1082)
T ss_pred             cccCCceEEEEeCcHHhh-ccHHHHheeEEe--CCHHHHHHHHHhhh-hcCCCcHHHHHHHHHHHHHhcc---C---cHH
Confidence            001234799999999999 899999999998  13558888877543 2233333444444333   210   0   125


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHH-H--HHHHH-hcCC-CChHHHHHHHHHccceE
Q 009517          412 CAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEK-A--IKAAE-AEKT-VPDAFYCRRLLNATGIV  486 (533)
Q Consensus       412 ~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~-~--~~~~~-~~~~-~~~~~~~~~ll~~~gV~  486 (533)
                      .+++++.++.++++++++.+.|++. |+.+.+|+||||+|++++...+ .  .+... ..+. .++..++..++++.||.
T Consensus       965 ~~~l~e~r~~Lk~rRd~L~e~L~~~-Gi~v~~PeGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVa 1043 (1082)
T PLN02672        965 LDGVAEQKKILKSRAERLKETLEAC-GWDVLEPQGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLC 1043 (1082)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHC-CCeEecCCcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEE
Confidence            5667888889999999999999998 9999999999999986531000 0  00000 0001 14567788888888999


Q ss_pred             EEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHH
Q 009517          487 LVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       487 v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~  525 (533)
                      +.||..|+. ++  ||||+++.+++++++++++|+++++
T Consensus      1044 V~PGs~FG~-~g--~~RIsfa~~~e~LeeALerL~kf~~ 1079 (1082)
T PLN02672       1044 INSSSWTGI-PG--YCRFSFALEDSEFDRALKAIARFKE 1079 (1082)
T ss_pred             EecCcccCC-CC--eEEEEecCCHHHHHHHHHHHHHHHH
Confidence            999998873 44  9999999888899999999998765

>PRK08637 hypothetical protein; Provisional

Probab=100.00  E-value=2.4e-44  Score=370.16  Aligned_cols=332  Identities=18%  Similarity=0.240  Sum_probs=257.6

Q ss_pred             CccccCCCcccHHHHHHHHHHHHhhcCC-CC-CCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHH-Hh
Q 009517          159 ATGAYSHSQGIKGLRDTIAAGIEARDGF-PA-DPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA-LH  235 (533)
Q Consensus       159 ~~~~Y~~~~G~~~lr~aia~~~~~~~g~-~~-~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~-~~  235 (533)
                      ....|++..|.++||+++++++.+.++. .. +.++|++|+|+++++.+++..++ ++||+|++++|+|+.|...+. ..
T Consensus        36 ~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~-~~gd~Vlv~~P~y~~~~~~~~~~~  114 (388)
T PRK08637         36 EIFPYAPPQGIPELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLFV-DQGDTVLLPDHNWGNYKLTFNTRR  114 (388)
T ss_pred             cccCCCCCCCCHHHHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHHhc-CCCCEEEEcCCCCccHHHHHHHhc
Confidence            4678999999999999999999865532 11 23689999999999999999998 899999999999999998765 68


Q ss_pred             CCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHH-----cCCEEEEcc
Q 009517          236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK-----EGLVLLADE  310 (533)
Q Consensus       236 g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~-----~~~~lI~De  310 (533)
                      |++++.+|+..+ ++++|++++++.++...  .+..+++++++||||||.++|.+++++|+++|++     |+++||+||
T Consensus       115 g~~vv~v~~~~~-~~~~d~~~l~~~~~~~~--~~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De  191 (388)
T PRK08637        115 GAEIVTYPIFDE-DGGFDTDALKEALQAAY--NKGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDD  191 (388)
T ss_pred             CCEEEEecccCC-CCcCCHHHHHHHHHhhc--cCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecc
Confidence            999999998432 35789999999987210  1145567777999999999999999999999886     899999999


Q ss_pred             ccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEec---CCHHHHHHHHHh----hh-c
Q 009517          311 VYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTG---FSAEVREQIYKV----AS-V  382 (533)
Q Consensus       311 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~---~~~~~~~~l~~~----~~-~  382 (533)
                      +|.+|.|++. +..++.....+.   +++..+++++||||.+ ++||+|+||+++..   .++++++.+.+.    .. .
T Consensus       192 ~Y~~l~~~~~-~~~~~~~~~~~~---~~~vi~i~~~s~SK~~-~~pGlRlG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  266 (388)
T PRK08637        192 AYFGLFYEDS-YKESLFAALANL---HSNILAVKLDGATKEE-FVWGFRVGFITFGTKAGSSQTVKEALEKKVKGLIRSN  266 (388)
T ss_pred             cchhcccCCc-cchhhHHHhhcc---cccceEEEeccccccC-CCcccceEEEEEccccCCcHHHHHHHHHHHHHHhhcc
Confidence            9999998664 333332211121   2233345667999998 78999999998622   247888777542    12 3


Q ss_pred             cccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCceEecCCceeEEecccCCCHH
Q 009517          383 NLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL---EGITCNKAEGAMYLFPRIQLPEK  459 (533)
Q Consensus       383 ~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~g~~~~~~~gg~~~~~~~~~~~~  459 (533)
                      .+++|.++|.++..+|+++.        +.+++++.+..++++++.+.+.|++.   +++.+.+|+||||+|++++  . 
T Consensus       267 ~~~~s~~~q~a~~~~l~~~~--------~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~l~--~-  335 (388)
T PRK08637        267 ISNGPHPSQSAVLRALNSPE--------FDKEKQEKFQILKERYEKTKEVLYDGKYDDAWQAYPFNSGYFMCLKLK--G-  335 (388)
T ss_pred             cCCCCcHHHHHHHHHhCCHH--------HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccccceEEEEecCC--h-
Confidence            45789999999999997532        45566777788999999999988764   3688899999999997664  1 


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec-CCcCcHHHHHHHHHHHHHHH
Q 009517          460 AIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~~~~l~~~l~~~  527 (533)
                      .          ++..++..+++++||.+.+.       +.+++||+++ .+++++++++++|+++++++
T Consensus       336 ~----------~~~~l~~~l~~~~gv~~~~~-------~~~~iRi~~~~~~~~~i~~~~~~l~~~~~~~  387 (388)
T PRK08637        336 V----------DAEELRVHLLEKYGIGTIAL-------NETDLRIAFSCVEEEDIPELFDSIYKAIKDL  387 (388)
T ss_pred             H----------HHHHHHHHHhhhcceEEEec-------cCCceEEEeecCCHHHHHHHHHHHHHHHHhc
Confidence            1          24556677777889998742       2338999997 78899999999999998764

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=1.4e-44  Score=368.10  Aligned_cols=342  Identities=16%  Similarity=0.275  Sum_probs=271.3

Q ss_pred             ccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHH
Q 009517           73 RGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQIL  152 (533)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~  152 (533)
                      ...+...++++...+.+         +|+|++|.+.+                      ..       |+.+++++.+.+
T Consensus        15 ~~~~~~~~~~~~~~~~~---------~i~l~~~~~~~----------------------~~-------~~~~~~~~~~~~   56 (357)
T PRK14809         15 GRGIEEVARELGLDPDD---------LVKLSSNENPH----------------------GP-------SPAAVEAIREAA   56 (357)
T ss_pred             CCCHHHHHHHhCCCccc---------eeEecCCCCCC----------------------CC-------CHHHHHHHHHHH
Confidence            33344555555433334         99999998764                      22       677888877766


Q ss_pred             hcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHH
Q 009517          153 DQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI  232 (533)
Q Consensus       153 ~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~  232 (533)
                      ..     ...|++ .|..+||+++|++++      +++++|++|+|+++++..++++++ ++||+|++++|+|..|...+
T Consensus        57 ~~-----~~~Y~~-~~~~~lr~~ia~~~~------~~~~~I~it~G~~~al~~~~~~~~-~~gd~V~v~~P~y~~~~~~~  123 (357)
T PRK14809         57 ER-----VHSYPK-ASHADLTAALADRWD------VSPEQVWLANGGDGALDYLARAML-DPGDTVLVPDPGFAYYGMSA  123 (357)
T ss_pred             hh-----hhcCCC-CCHHHHHHHHHHHhC------CCcceEEECCCHHHHHHHHHHHhc-CCCCEEEEeCCChHHHHHHH
Confidence            53     457875 679999999999984      789999999999999999999998 89999999999999999888


Q ss_pred             HHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEcccc
Q 009517          233 ALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVY  312 (533)
Q Consensus       233 ~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y  312 (533)
                      ...|.+++.++++.+++|.+|++.+++.+ +      ++++|++++||||||.++|.+++++|+++|++ +++||+||+|
T Consensus       124 ~~~g~~~~~~~l~~~~~~~~~~~~~~~~~-~------~~k~i~l~~p~NPTG~~~s~~~~~~l~~~~~~-~~~iI~De~y  195 (357)
T PRK14809        124 RYHHGEVREYPVSKADDFEQTADTVLDAY-D------GERIVYLTSPHNPTGSEIPLDEVEALAERTDE-ETLVVVDEAY  195 (357)
T ss_pred             HHcCCeEEEEecccCcCCCcCHHHHHHhh-c------CCcEEEEeCCCCCCCcCCCHHHHHHHHHhCcc-CcEEEEechh
Confidence            99999999999976667888888877764 2      57899999999999999999999999999975 7899999999


Q ss_pred             ccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhccccCChHHHH
Q 009517          313 QENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQI  392 (533)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~~~~~~~~~q~  392 (533)
                      .+|.+.+     +.....      ....++|+++||||.| |+||+|+||+++   ++++++.+.+.. ..++.+.++|.
T Consensus       196 ~~~~~~~-----~~~~~~------~~~~~vi~~~SfSK~~-~~~GlRiG~~~~---~~~~~~~~~~~~-~~~~~~~~~~~  259 (357)
T PRK14809        196 GEFAERP-----SAVALV------EERDDVAVLRTFSKAY-GLAGLRLGYAVV---PEEWADAYARVN-TPFAASELACR  259 (357)
T ss_pred             hhccCCc-----hhHHHH------hhCCCEEEEecchhHh-cCcchhheeeec---CHHHHHHHHHhC-CCCCCCHHHHH
Confidence            9987632     111111      1234689999999999 899999999998   999999888765 35778899999


Q ss_pred             HHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCCh
Q 009517          393 LASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPD  472 (533)
Q Consensus       393 a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~  472 (533)
                      ++..+|.+           .++++++++.++++++.+.+.|+.. +    .+.+|+|+|+++.               ++
T Consensus       260 ~a~~~l~~-----------~~~~~~~~~~~~~~r~~l~~~L~~~-~----~~~~g~f~~~~~~---------------~~  308 (357)
T PRK14809        260 AGLAALDD-----------DEHVERTVETARWAREYIREELDAP-T----WESAGNFVLAEVG---------------DA  308 (357)
T ss_pred             HHHHHhCC-----------HHHHHHHHHHHHHHHHHHHHHhcCc-c----CCCCCCEEEEECC---------------CH
Confidence            98888853           1345667788888999999998654 2    2567889997653               13


Q ss_pred             HHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHH
Q 009517          473 AFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       473 ~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~  525 (533)
                      ..++.. |+++||.+.||..|+. +  ++|||+++. .+++++++++|+++++
T Consensus       309 ~~~~~~-l~~~gv~v~~g~~f~~-~--~~iRls~~~-~~~~~~~l~~L~~~l~  356 (357)
T PRK14809        309 SAVAEA-AQERGVIVRDCTSFGL-P--ECIRITCGT-REETERAVEVLNEVLA  356 (357)
T ss_pred             HHHHHH-HHHCCEEEEECccCCC-C--CeEEEecCC-HHHHHHHHHHHHHHhc
Confidence            444444 6778999999999973 3  399999874 5789999999998764

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=100.00  E-value=2.5e-44  Score=365.19  Aligned_cols=320  Identities=18%  Similarity=0.285  Sum_probs=258.7

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      |+.+++++.+.+..     ...|++. +..+||+++|++++      +++++|++|+|+++++..+++.+  .+ +.|++
T Consensus        34 p~~~~~a~~~~~~~-----~~~Y~~~-~~~~lr~~ia~~~~------~~~~~i~it~Ga~~~l~~~~~~~--~~-~~v~i   98 (354)
T PRK06358         34 PESLKQAITENLDK-----LVEYPDP-DYLELRKRIASFEQ------LDLENVILGNGATELIFNIVKVT--KP-KKVLI   98 (354)
T ss_pred             CHHHHHHHHHHHHh-----hhcCCCc-cHHHHHHHHHHHhC------CChhhEEECCCHHHHHHHHHHHh--CC-CcEEE
Confidence            67888888877653     4568765 58999999999984      78999999999999999999986  34 58999


Q ss_pred             cCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHH
Q 009517          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (533)
Q Consensus       221 ~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~  300 (533)
                      ++|+|+.|...++..|++++.++++.+++|.+| +++++.+..      ++++|++++||||||.+++.+++++|+++|+
T Consensus        99 ~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d-~~~~~~~~~------~~~~v~~~~P~NPtG~~~~~~~~~~l~~~a~  171 (354)
T PRK06358         99 LAPTFAEYERALKAFDAEIEYAELTEETNFAAN-EIVLEEIKE------EIDLVFLCNPNNPTGQLISKEEMKKILDKCE  171 (354)
T ss_pred             ecCChHHHHHHHHHcCCeeEEEeCccccCCCcc-HHHHHhhcc------CCCEEEEeCCCCCCCCccCHHHHHHHHHHHH
Confidence            999999999999999999999999877788999 666666654      6899999999999999999999999999999


Q ss_pred             HcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhh
Q 009517          301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA  380 (533)
Q Consensus       301 ~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~  380 (533)
                      +++++||+||+|.+|.+++.  ..+....   +   +...++|+++||||.+ |+||+|+||+++  .++.+++.+.+..
T Consensus       172 ~~~~~ii~De~Y~~~~~~~~--~~~~~~~---~---~~~~~vi~~~S~SK~~-gl~G~RiG~lv~--~~~~~~~~~~~~~  240 (354)
T PRK06358        172 KRNIYLIIDEAFMDFLEENE--TISMINY---L---ENFKNLIIIRAFTKFF-AIPGLRLGYGLT--SNKNLAEKLLQMR  240 (354)
T ss_pred             hcCCEEEEeCcccccCCCcc--chhHHHh---c---cCCCCEEEEEechhhc-cCcchhheeeec--CCHHHHHHHHHhC
Confidence            99999999999999988653  2222221   2   2334789999999999 899999999986  2467888887765


Q ss_pred             hccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHH
Q 009517          381 SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKA  460 (533)
Q Consensus       381 ~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~  460 (533)
                      . .++.+.++|.++..+|++           .++++++++.++++++.+.+.|++++|+.+..|+|+ |+|++++  .  
T Consensus       241 ~-~~~~~~~~q~~~~~~l~~-----------~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~g~-f~~~~~~--~--  303 (354)
T PRK06358        241 E-PWSINTFADLAGQTLLDD-----------KEYIKKTIQWIKEEKDFLYNGLSEFKGIKVYKPSVN-FIFFKLE--K--  303 (354)
T ss_pred             C-CCcchHHHHHHHHHHhcc-----------HHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcCCcce-EEEEEcC--c--
Confidence            4 477899999999999853           134567778889999999999999888888888776 7786554  1  


Q ss_pred             HHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHH
Q 009517          461 IKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l  524 (533)
                                 ...++..++ ++||.+.||..|+. .+.++|||+++.+++ .++++++|++++
T Consensus       304 -----------~~~~~~~l~-~~gI~v~~~~~f~~-~~~~~iRls~~~~~~-~~~l~~~l~~~~  353 (354)
T PRK06358        304 -----------PIDLRKELL-KKGILIRSCSNYRG-LDENYYRVAVKSRED-NKKLLKALEVIL  353 (354)
T ss_pred             -----------hHHHHHHHH-HCCeEEEECCCCCC-CCCCEEEEEeCCHHH-HHHHHHHHHHHh
Confidence                       234455544 68999999999952 344599999986554 588888887764

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=2.7e-44  Score=367.93  Aligned_cols=340  Identities=18%  Similarity=0.227  Sum_probs=265.4

Q ss_pred             eeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHH
Q 009517           99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA  178 (533)
Q Consensus        99 ~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~  178 (533)
                      +++|+.|.|.+                      ++       |+.+++++.+.+....  ....|++ .|..+||+++|+
T Consensus        30 ~~~l~~~~~~~----------------------~~-------~~~~~~~~~~~~~~~~--~~~~Y~~-~G~~~Lr~aia~   77 (374)
T PRK02610         30 LDRLDTNEFPY----------------------DL-------PPDLKQKLAWLYQQGI--ESNRYPD-GGHEALKQAIAE   77 (374)
T ss_pred             eeEecCCCCCC----------------------CC-------CHHHHHHHHHHHhhcc--cccCCCC-CchHHHHHHHHH
Confidence            89999999874                      33       6888888887766421  1346865 699999999999


Q ss_pred             HHHhhc--CCCCCCCCEEEcCChHHHHHHHHHHhccCCCC-eEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHH
Q 009517          179 GIEARD--GFPADPNDIFLTDGASPAVHMMMQLLIRSEND-GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETS  255 (533)
Q Consensus       179 ~~~~~~--g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd-~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~  255 (533)
                      ++++++  |+.+++++|++|+|+++++..++.+++ .+|| +|++++|+|..|...++..|++++.+++++ ++|++|++
T Consensus        78 ~~~~~~~~~~~v~~~~I~it~Ga~~al~~~~~~~~-~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~  155 (374)
T PRK02610         78 YVNESAAGSSQITPANISVGNGSDELIRSLLIATC-LGGEGSILVAEPTFSMYGILAQTLGIPVVRVGRDP-ETFEIDLA  155 (374)
T ss_pred             HhCccccccCCCCHHHEEEcCChHHHHHHHHHHHc-CCCCCeEEEcCCChHHHHHHHHHcCCEEEEecCCc-ccCCCCHH
Confidence            998876  577889999999999999998888776 6775 899999999999999999999999999864 36899999


Q ss_pred             HHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCC
Q 009517          256 EVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY  335 (533)
Q Consensus       256 ~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~  335 (533)
                      +++++++...  ..++++|++++||||||.++|.+++++|+++|  ++++||+||+|.+|.+.   .  .+..+      
T Consensus       156 ~l~~~~~~~~--~~~~k~i~l~~P~NPTG~~~s~~~l~~l~~~~--~~~~iI~De~Y~~~~~~---~--~~~~~------  220 (374)
T PRK02610        156 AAQSAIEQTQ--NPPVRVVFVVHPNSPTGNPLTAAELEWLRSLP--EDILVVIDEAYFEFSQT---T--LVGEL------  220 (374)
T ss_pred             HHHHHHHhhc--CCCceEEEEeCCCCCCCCCCCHHHHHHHHhcc--CCcEEEEeccccccCcc---c--hHHHH------
Confidence            9999987410  12799999999999999999999999999987  48999999999997531   1  11121      


Q ss_pred             CCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHH
Q 009517          336 GEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAER  415 (533)
Q Consensus       336 ~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~  415 (533)
                       ..+.++|+++||||++ |+||+|+||+++   ++++++.+.+.. ..++.+.+.|.++..+|++.       +   .+.
T Consensus       221 -~~~~~~ivi~SfSK~~-g~~GlRiG~~v~---~~~l~~~l~~~~-~~~~~~~~~q~a~~~~l~~~-------~---~~~  284 (374)
T PRK02610        221 -AQHPNWVILRTFSKAF-RLAAHRVGYAIG---HPELIAVLEKVR-LPYNLPSFSQLAAQLALEHR-------Q---ELL  284 (374)
T ss_pred             -hcCCCEEEEEecchhc-cCcccceeeeec---CHHHHHHHHHhc-CCCCCCHHHHHHHHHHhcCH-------H---HHH
Confidence             1223578899999999 899999999998   999999988765 34677899999999888631       2   233


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCC
Q 009517          416 DGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ  495 (533)
Q Consensus       416 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~  495 (533)
                      +.+++.+++ ++.+.+.|++++++.+ .|.+|+|+|++++..           . ++..++ ..|+++||.+.++     
T Consensus       285 ~~~~~~~~~-r~~l~~~L~~~~~~~~-~p~~g~f~~~~l~~~-----------~-~~~~~~-~~l~~~gi~v~~~-----  344 (374)
T PRK02610        285 AAIPEILQE-RDRLYQALQELPQLRV-WPSAANFLYLRLSQD-----------A-ALAALH-QALKAQGTLVRHT-----  344 (374)
T ss_pred             HHHHHHHHH-HHHHHHHHHhCCCcEe-CCCcceEEEEeCCCC-----------C-CHHHHH-HHHHHCCEEEEeC-----
Confidence            444444444 6678888988877765 588899999765411           1 234444 4467789999863     


Q ss_pred             CCCCceEEEEecCCcCcHHHHHHHHHHHHHHH
Q 009517          496 VPGTWHFRCTILPQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       496 ~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~  527 (533)
                       .  ++|||+++.+ +++++++++|+++++++
T Consensus       345 -~--~~lRls~~~~-~~~~~~l~~l~~~l~~~  372 (374)
T PRK02610        345 -G--GGLRITIGTP-EENQRTLERLQAALTQL  372 (374)
T ss_pred             -C--CeEEEeCCCH-HHHHHHHHHHHHHHhhc
Confidence             2  2899999854 56899999999988654

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.8e-44  Score=344.40  Aligned_cols=377  Identities=19%  Similarity=0.242  Sum_probs=308.6

Q ss_pred             cccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHH
Q 009517           65 VLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADS  144 (533)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v  144 (533)
                      +.+++..|.++|+++...++++++        +++|||++|.+.....+++                         ....
T Consensus         2 F~~i~~~p~DpIlgL~e~f~~D~R--------~~KVNLgIGvY~de~Gk~p-------------------------vl~a   48 (396)
T COG1448           2 FEKIEAAPADPILGLKEAFKADPR--------PNKVNLGIGVYKDEDGKTP-------------------------VLRA   48 (396)
T ss_pred             ccccccCCCCchhHHHHHHhcCCC--------cCeeeeeeeeeeCCCCCcc-------------------------hhHH
Confidence            345677788899999999998544        4699999999887444443                         4667


Q ss_pred             HHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCC---CCCCCE--EEcCChHHHHHHHHHHhcc-CCCCeE
Q 009517          145 IERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFP---ADPNDI--FLTDGASPAVHMMMQLLIR-SENDGI  218 (533)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~---~~~~~i--~~t~G~~~al~~~~~~l~~-~~gd~V  218 (533)
                      ++++.+.+.....  ...|.|..|.+++++++++++.   |.+   +..++|  +-|.|||.|+..+...+.. .+..+|
T Consensus        49 V~~Ae~~l~~~~~--~k~Yl~i~G~~~f~~~~~~llF---G~d~~~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~~~~~v  123 (396)
T COG1448          49 VKKAEKRLLEQEK--TKNYLPIEGLPEFLEAVQKLLF---GADSPALAEDRVATVQTLGGTGALRVAADFLARFFPDATV  123 (396)
T ss_pred             HHHHHHHhhcccc--ccccCCcCCcHHHHHHHHHHhc---CCCcHHHHhhhHhheecCCcchHHHHHHHHHHHhCCCceE
Confidence            8888887776553  7899999999999999999994   543   444555  6688999999998887741 255679


Q ss_pred             EEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCC--CCCCccCCCHHHHHHHH
Q 009517          219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP--GNPTGQVLAEENQRAIV  296 (533)
Q Consensus       219 lv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p--~NPtG~~~s~~~l~~i~  296 (533)
                      ++++|+|++|..++..+|.++..||+.+..+-++|++.+.+.|+..     ..+.|+|.|+  |||||..+|.++|++|+
T Consensus       124 wis~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a-----~~~~vvLLH~CcHNPTG~D~t~~qW~~l~  198 (396)
T COG1448         124 WISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDFDGMLADLKTA-----PEGSVVLLHGCCHNPTGIDPTEEQWQELA  198 (396)
T ss_pred             EeCCCCcHhHHHHHHhcCCceeeeeccccccccccHHHHHHHHHhC-----CCCCEEEEecCCCCCCCCCCCHHHHHHHH
Confidence            9999999999999999999999999999888899999999999986     4445555544  99999999999999999


Q ss_pred             HHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHH--
Q 009517          297 DFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVRE--  374 (533)
Q Consensus       297 ~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~--  374 (533)
                      ++.++++++.++|-+|++|.-+.+.....+..++.      ....++++.||||+| ||+|.|+|++.+++.+.+...  
T Consensus       199 ~~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~------~~~~~lva~S~SKnf-gLYgERVGa~~vva~~~~~a~~v  271 (396)
T COG1448         199 DLIKERGLIPFFDIAYQGFADGLEEDAYALRLFAE------VGPELLVASSFSKNF-GLYGERVGALSVVAEDAEEADRV  271 (396)
T ss_pred             HHHHHcCCeeeeehhhhhhccchHHHHHHHHHHHH------hCCcEEEEehhhhhh-hhhhhccceeEEEeCCHHHHHHH
Confidence            99999999999999999965432222223333332      233489999999999 899999999998877766554  


Q ss_pred             --HHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C--CceEecCCcee
Q 009517          375 --QIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL-E--GITCNKAEGAM  448 (533)
Q Consensus       375 --~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~--g~~~~~~~gg~  448 (533)
                        +++.... .+++|+..+..+++.+|++++    +.+.|.+++..|++++.++|..|.+.|++. +  .|+++..+-||
T Consensus       272 ~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~----Lra~W~~El~~Mr~Ri~~mR~~lv~~L~~~~~~~~f~~i~~Q~GM  347 (396)
T COG1448         272 LSQLKAIIRTNYSNPPAHGAAVVATILNNPE----LRAEWEQELEEMRQRILEMRQALVDALKALGAPRNFDFIISQRGM  347 (396)
T ss_pred             HHHHHHHHHhccCCCchhhHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchHhhcCce
Confidence              4444443 789999999999999999865    889999999999999999999999999985 2  38999999999


Q ss_pred             EEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec-CCcCcHHHHHHHHHHH
Q 009517          449 YLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-PQEDKIPAIVTRLTDF  523 (533)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~~~~l~~~  523 (533)
                      |.+.+++                 .+.+.++.+++||+++       ..|    ||+++ +++.+|+.++++|.++
T Consensus       348 Fsy~Gls-----------------~~QV~rLree~~IY~v-------~sG----Ri~vaGl~~~ni~~va~ai~~v  395 (396)
T COG1448         348 FSYTGLS-----------------PEQVDRLREEFGIYLV-------ASG----RINVAGLNTSNIDYVAKAIAAV  395 (396)
T ss_pred             eecCCCC-----------------HHHHHHHHHhccEEEe-------cCC----eeeeccCChhhHHHHHHHHHhh
Confidence            9997765                 2336789999999999       455    99997 9999999999999876

>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-43  Score=337.81  Aligned_cols=347  Identities=21%  Similarity=0.365  Sum_probs=293.8

Q ss_pred             ccccCCCcccHHHHHHHHHHHHhhcC--CCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHh-C
Q 009517          160 TGAYSHSQGIKGLRDTIAAGIEARDG--FPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALH-G  236 (533)
Q Consensus       160 ~~~Y~~~~G~~~lr~aia~~~~~~~g--~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~-g  236 (533)
                      ...|.+-.|++++|+++|+++.+..|  +..+|+++++++|++.|.++++-.+. +|||.-++|.|.|+++..-++.. |
T Consensus       114 la~fqdy~Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLa-dpgdafLvPtPyY~gfdrdl~~rTg  192 (471)
T KOG0256|consen  114 LAMFQDYHGLPSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLA-DPGDAFLVPTPYYPGFDRDLRWRTG  192 (471)
T ss_pred             HhhcccccCchHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhc-CCCceeeecCCCCCcccccceeccC
Confidence            56688889999999999999997654  45788999999999999999999998 99999999999999998777665 8


Q ss_pred             CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEcccccccc
Q 009517          237 GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENV  316 (533)
Q Consensus       237 ~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~  316 (533)
                      +++++|.++..++|+++++++|+++.++++.+.+++.|+++||+||-|.+++++++..++++|.++|+.+|+||+|.+-+
T Consensus       193 veivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sV  272 (471)
T KOG0256|consen  193 VEIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSV  272 (471)
T ss_pred             ceEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhccccCChHHHHHHHH
Q 009517          317 YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASL  396 (533)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~  396 (533)
                      |+.. .+.|+.++.....-  ...+|-++.|+||-| |+||+|+|.+..  .++.++.+..++.+ ....++..|+.++.
T Consensus       273 F~~~-~F~Sv~ev~~~~~~--~~~rvHivyslSKD~-GlpGfRvGviYS--~ne~VvsaA~kmss-f~~vSs~tQ~~la~  345 (471)
T KOG0256|consen  273 FDKS-EFRSVLEVRKDPHL--DPDRVHIVYSLSKDF-GLPGFRVGVIYS--NNEDVVSAATKMSS-FGLVSSQTQYLLAS  345 (471)
T ss_pred             cCcc-CceEHHHHhhcccc--CCCcEEEEEEecccc-CCCceEEEEEEe--cChHHHHHHHHHhh-ccCCcHHHHHHHHH
Confidence            9764 79999888766521  233678899999999 999999999987  58888888887764 46678999999999


Q ss_pred             HcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHH
Q 009517          397 VMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYC  476 (533)
Q Consensus       397 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (533)
                      +|.+..     |  ..+.+++..++++.+..++.+.|+++ |+.+.+.++|+|+|++++.   ...   ......+.+++
T Consensus       346 LLSD~~-----f--~~~yl~en~~Rl~~rh~~~~~gLk~l-gI~cl~s~AGlF~wvDlr~---lL~---s~tfe~El~Lw  411 (471)
T KOG0256|consen  346 LLSDEE-----F--TREYLRENNKRLRIRHRYIVEGLKAL-GIPCLKSNAGLFCWVDLRK---LLT---SLTFEGELELW  411 (471)
T ss_pred             HhchHH-----H--HHHHHHHHHHHHHHHHHHHHhhHHhc-CCceeecCCeeEEEEEhHH---hcC---cCChHHHHHHH
Confidence            998632     1  22346778888999999999999999 9999999999999988761   111   11122345667


Q ss_pred             HHHHHccceEEEcCCCCCCCCCCceEEEEec-CCcCcHHHHHHHHHHHHHHHHH
Q 009517          477 RRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-PQEDKIPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       477 ~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~~~~l~~~l~~~~~  529 (533)
                      .+++.+-++.+.||+.|.. .-.+|||++|+ ..++.++-+++||++++..+.+
T Consensus       412 ~~i~~~vklnlSpG~s~~C-~EpGWFRvcFAn~~~~t~~~am~Ri~~~~~~~~~  464 (471)
T KOG0256|consen  412 ERILDNVKLNLSPGSSCHC-HEPGWFRVCFANMSEETLEVAMRRLKQFLDSQVQ  464 (471)
T ss_pred             HHHHHhhccccCCCCccee-cCCCeEEEEeccCCHHHHHHHHHHHHHHHHhhhc
Confidence            7888777999999999974 33349999998 4455555599999999986654

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=100.00  E-value=2.5e-44  Score=365.95  Aligned_cols=332  Identities=17%  Similarity=0.277  Sum_probs=268.4

Q ss_pred             eeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHH
Q 009517           99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA  178 (533)
Q Consensus        99 ~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~  178 (533)
                      +|+|+.|.+.+                      +.       |+.+++++.+.+..     ...|+ ..|..+||+++|+
T Consensus        31 ~i~l~~nen~~----------------------~~-------~~~v~~a~~~~~~~-----~~~Yp-~~g~~~Lr~aia~   75 (366)
T PRK01533         31 FVKLASNENPF----------------------GC-------SPRVLDELQKSWLD-----HALYP-DGGATTLRQTIAN   75 (366)
T ss_pred             eEEeCCCCCCC----------------------CC-------CHHHHHHHHHHHHh-----cCcCC-CCCHHHHHHHHHH
Confidence            89999999774                      22       78888888877654     23474 5689999999999


Q ss_pred             HHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHH
Q 009517          179 GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVK  258 (533)
Q Consensus       179 ~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~  258 (533)
                      +++      +++++|++|+|+++++..++++++ ++||+|++++|+|+.|...+...|.+++.++++   ++++|+++|+
T Consensus        76 ~~~------~~~~~I~vt~Gs~e~i~~~~~~l~-~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~---~~~~d~~~l~  145 (366)
T PRK01533         76 KLH------VKMEQVLCGSGLDEVIQIISRAVL-KAGDNIVTAGATFPQYRHHAIIEGCEVKEVALN---NGVYDLDEIS  145 (366)
T ss_pred             HhC------CCcceEEECCCHHHHHHHHHHHhc-CCCCEEEEcCCcHHHHHHHHHHcCCEEEEeecC---CCCcCHHHHH
Confidence            984      779999999999999999999998 899999999999999999999999999999985   3479999999


Q ss_pred             HHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCC
Q 009517          259 KQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEK  338 (533)
Q Consensus       259 ~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (533)
                      +++++      ++++|++++||||||.+++.+++++|+++|++++ ++|+||+|.+|.+.+.  ..+....   +   +.
T Consensus       146 ~~~~~------~~~~v~i~~P~NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~--~~~~~~~---~---~~  210 (366)
T PRK01533        146 SVVDN------DTKIVWICNPNNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKD--FPETLPL---L---EK  210 (366)
T ss_pred             HHhCc------CCcEEEEeCCCCCCCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhcccc--CcchhHH---h---cc
Confidence            98876      7899999999999999999999999999998876 5677999998876432  1222222   1   23


Q ss_pred             CceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHH
Q 009517          339 DISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGI  418 (533)
Q Consensus       339 ~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~  418 (533)
                      ..++|+++||||.| |++|+|+||+++   ++++++.+.+.. ..++.+.++|.++..+|++.           ++.+.+
T Consensus       211 ~~~vi~~~SfSK~~-~l~GlRiG~~i~---~~~~~~~l~~~~-~~~~~~~~~q~aa~~~l~~~-----------~~~~~~  274 (366)
T PRK01533        211 HKNILVLRTFSKAY-GLASFRVGYAVG---HEELIEKLNVVR-LPFNVSSLAQKAATIAFGDD-----------EFIEEI  274 (366)
T ss_pred             CCCEEEEeCchHHh-cChHHHHhHHhC---CHHHHHHHHHhc-CCCCcCHHHHHHHHHHhCCH-----------HHHHHH
Confidence            34689999999999 899999999998   899999998765 45889999999999999632           334455


Q ss_pred             HHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCC
Q 009517          419 LSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPG  498 (533)
Q Consensus       419 ~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g  498 (533)
                      ++.++++++++.+.|+.+ |+.+.+++|+ |+|+.++  .             ...+. ..|.++||.|++   |   + 
T Consensus       275 ~~~~~~~r~~~~~~l~~~-g~~~~~~~~n-f~~~~~~--~-------------~~~~~-~~l~~~GI~Vr~---~---~-  329 (366)
T PRK01533        275 VRVNTEGLRQYESFCKEN-EIPFYQSQTN-FIFLPVE--N-------------GGEIY-EACAHAGFIIRP---F---P-  329 (366)
T ss_pred             HHHHHHHHHHHHHHHHhC-CCccCCCcCc-EEEEeCC--C-------------HHHHH-HHHHHCCcEEcc---C---C-
Confidence            667777888888888887 8888888655 6786543  1             23333 445679999997   4   1 


Q ss_pred             CceEEEEecCCcCcHHHHHHHHHHHHHHHHHHhcC
Q 009517          499 TWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKFRN  533 (533)
Q Consensus       499 ~~~iRis~~~~~e~i~~~~~~l~~~l~~~~~~~~~  533 (533)
                       +++||+++.. ++.+.++++|+++++..+++.||
T Consensus       330 -~~iRis~~~~-~~~~~l~~al~~~~~~~~~~~~~  362 (366)
T PRK01533        330 -NGVRITVGTR-EQNEGVISVLQQHFENKKRKSRD  362 (366)
T ss_pred             -CceEEeCCCH-HHHHHHHHHHHHHHHhccccccc
Confidence             3899999865 45699999999999888777665

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=100.00  E-value=2.9e-43  Score=358.03  Aligned_cols=347  Identities=19%  Similarity=0.252  Sum_probs=267.6

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      +...++++...+.+         +++|++|.+.+                      +.       |+.+++++.+.+.. 
T Consensus         8 ~~~~~~~~~~~~~~---------~i~l~~~~~~~----------------------~~-------p~~~~~a~~~~~~~-   48 (356)
T PRK08056          8 IREAATVLGISPDQ---------LLDFSANINPL----------------------GM-------PVSLKRAIIDNLDC-   48 (356)
T ss_pred             HHHHHHHhCCChhh---------EEEeccccCCC----------------------CC-------CHHHHHHHHHHHHh-
Confidence            44445555443444         89999998764                      22       78888888877764 


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHh
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALH  235 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~  235 (533)
                          ...|++. +..+||+++|++++      +++++|++|+|+++++..+++.+  .+|+ +++++|+|..|...++..
T Consensus        49 ----~~~y~~~-~~~~lr~~ia~~~~------~~~~~i~it~Ga~~~l~~~~~~l--~~g~-viv~~P~y~~~~~~~~~~  114 (356)
T PRK08056         49 ----AERYPDV-EYRHLHQALARHHQ------VPASWILAGNGETESIFAVVSGL--KPRR-AMIVTPGFAEYRRALQQV  114 (356)
T ss_pred             ----cccCcCc-cHHHHHHHHHHHhC------cChhhEEECCCHHHHHHHHHHHh--CCCC-EEEeCCCcHHHHHHHHHc
Confidence                3368764 58999999999974      67899999999999999999986  4675 788899999999999999


Q ss_pred             CCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccc
Q 009517          236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN  315 (533)
Q Consensus       236 g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~  315 (533)
                      |++++.++++++++|.+| +++++.+.+      ++++|++++||||||.+++.+++++|+++|++++++||+||+|.+|
T Consensus       115 g~~~~~v~~~~~~~~~~~-~~~~~~~~~------~~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~  187 (356)
T PRK08056        115 GCEIRRYSLREADGWQLT-DAILEALTP------DLDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDF  187 (356)
T ss_pred             CCeEEEEecccccCCCcc-HHHHHhccC------CCCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhcc
Confidence            999999999876678777 455555543      7899999999999999999999999999999999999999999998


Q ss_pred             cccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhccccCChHHHHHHH
Q 009517          316 VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILAS  395 (533)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~  395 (533)
                      .+.+. .+.+   ...      ...++|+++||||+| |++|+|+||+++  .++++++.+.+.. ..++++.++|.++.
T Consensus       188 ~~~~~-~~~~---~~~------~~~~~i~~~S~SK~~-~~~G~RiG~~v~--~~~~~~~~l~~~~-~~~~~~~~~~~~a~  253 (356)
T PRK08056        188 IPDET-GFIP---QLA------DNPHLWVLRSLTKFY-AIPGLRLGYLVN--SDDAAVARMRRQQ-MPWSINAFAALAGE  253 (356)
T ss_pred             CCcch-HHHH---Hhc------cCCCEEEEEechhhc-cCcchhheeeec--CCHHHHHHHHHhC-CCCchhHHHHHHHH
Confidence            76442 1111   111      123579999999999 899999999986  2467777776644 34677888999998


Q ss_pred             HHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHH
Q 009517          396 LVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFY  475 (533)
Q Consensus       396 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (533)
                      .++.+.           .+.+++++.++++++.+.+.|++++++.+.++ +++|+|++++.+              +..+
T Consensus       254 ~~l~~~-----------~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~-~~~~~~~~~~~~--------------~~~~  307 (356)
T PRK08056        254 VILQDR-----------AYQQATWQWLAEEGARFYQALCALPLLTVWPG-RANYLFLRCERP--------------DIDL  307 (356)
T ss_pred             HHhCCH-----------HHHHHHHHHHHHHHHHHHHHHhcCCCcEEcCC-CCcEEEEEcCCC--------------hHHH
Confidence            888531           23466788899999999999998888876655 678899765421              2344


Q ss_pred             HHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHH
Q 009517          476 CRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       476 ~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~  525 (533)
                      +..++ ++||.+.||..|.. .+.++|||+++.. ++.+.+++.|+++++
T Consensus       308 ~~~l~-~~gI~v~~~~~f~~-~~~~~iRis~~~~-~~~~~l~~~l~~~~~  354 (356)
T PRK08056        308 QRALL-TQRILIRSCANYPG-LDSRYYRVAIRSA-AENERLLAALRNVLT  354 (356)
T ss_pred             HHHHH-HCCeEEEECCCCCC-CCCCEEEEEEcCH-HHHHHHHHHHHHHHc
Confidence            55544 68999999999952 3345999999843 455777777776643

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=4.7e-43  Score=358.40  Aligned_cols=337  Identities=17%  Similarity=0.218  Sum_probs=269.5

Q ss_pred             eeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHH
Q 009517           99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA  178 (533)
Q Consensus        99 ~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~  178 (533)
                      .|+|++|.|.+                      +.       |+.+++++.+.+..... ....|++ .|.++||+++|+
T Consensus        28 ~i~l~~~~~~~----------------------~~-------~~~~~~al~~~l~~~~~-~~~~Y~~-~g~~~lr~aia~   76 (368)
T PRK03317         28 PVRLNTNENPY----------------------PP-------SPALVADIAEAVAEAAA-GLNRYPD-RDAVALRADLAA   76 (368)
T ss_pred             eeEecCCCCCC----------------------CC-------CHHHHHHHHHHHhhhhh-hhccCCC-CchHHHHHHHHH
Confidence            79999999764                      22       68888888877654221 2567865 579999999999


Q ss_pred             HHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHH
Q 009517          179 GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVK  258 (533)
Q Consensus       179 ~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~  258 (533)
                      ++++++|.++++++|++|+|+++++..++++++ ++||.|+++.|+|..|...++..|.+++.++.+  ++|++|+++++
T Consensus        77 ~~~~~~~~~~~~~~I~it~G~~~~l~~~~~~~~-~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~  153 (368)
T PRK03317         77 YLTAQTGVGLTVENVWAANGSNEILQQLLQAFG-GPGRTALGFVPSYSMHPIIARGTHTEWVEGPRA--ADFTLDVDAAV  153 (368)
T ss_pred             HhhhhccCCCChhhEEECCCHHHHHHHHHHHhc-CCCCEEEEeCCChHHHHHHHHhcCCeeEEcccC--CCCCCCHHHHH
Confidence            999998988999999999999999999999998 899999999999999999999999999888764  36899999999


Q ss_pred             HHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCC
Q 009517          259 KQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEK  338 (533)
Q Consensus       259 ~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (533)
                      ++++..     ++++|++++||||||.+++.+++++|+++|   ++++|+||+|.+|.+.+.   .+...+..      .
T Consensus       154 ~~~~~~-----~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~---~~~lI~DE~y~~~~~~~~---~~~~~~~~------~  216 (368)
T PRK03317        154 AAIAEH-----RPDVVFLTSPNNPTGTALPLDDVEAILDAA---PGIVVVDEAYAEFRRSGT---PSALTLLP------E  216 (368)
T ss_pred             HHHhcc-----CCCEEEEeCCCCCCCCCCCHHHHHHHHHHC---CceEEEeCCchhhcccCC---cCHHHHHH------h
Confidence            999753     688999999999999999988888887777   699999999999877542   12223221      1


Q ss_pred             CceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHH
Q 009517          339 DISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGI  418 (533)
Q Consensus       339 ~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~  418 (533)
                      ..++|+++||||++ |++|+|+||+++   ++++++.+.... ..++.++++|.++..+|++.           ++..+.
T Consensus       217 ~~~~i~~~SfSK~~-g~~GlRiG~~~~---~~~~~~~l~~~~-~~~~~s~~~~~a~~~~l~~~-----------~~~~~~  280 (368)
T PRK03317        217 YPRLVVSRTMSKAF-AFAGGRLGYLAA---APAVVDALRLVR-LPYHLSAVTQAAARAALRHA-----------DELLAS  280 (368)
T ss_pred             CCCEEEEEechhhh-ccchhhhhhhhC---CHHHHHHHHhcC-CCCCCCHHHHHHHHHHhhCH-----------HHHHHH
Confidence            22589999999999 889999999998   999999887655 45788999999998888531           122334


Q ss_pred             HHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCC
Q 009517          419 LSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPG  498 (533)
Q Consensus       419 ~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g  498 (533)
                      +++++++++.+.+.|++. |+.+..++++|++|.++.               +...++ +.|.++||.+.++   + .+ 
T Consensus       281 ~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~---------------~~~~~~-~~l~~~Gv~v~~~---~-~~-  338 (368)
T PRK03317        281 VAALRAERDRVVAWLREL-GLRVAPSDANFVLFGRFA---------------DRHAVW-QGLLDRGVLIRDV---G-IP-  338 (368)
T ss_pred             HHHHHHHHHHHHHHHHHC-CCEeCCCCCcEEEEeccC---------------CHHHHH-HHHHHCCEEEEeC---C-CC-
Confidence            456788888999999988 898889999999885432               123344 4456789999973   2 22 


Q ss_pred             CceEEEEecCCcCcHHHHHHHHHHHHHH
Q 009517          499 TWHFRCTILPQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       499 ~~~iRis~~~~~e~i~~~~~~l~~~l~~  526 (533)
                       +++||+++. .+++++++++|+++++.
T Consensus       339 -~~iRi~~~~-~~~~~~~~~~l~~~~~~  364 (368)
T PRK03317        339 -GWLRVTIGT-PEENDAFLAALAEVLAT  364 (368)
T ss_pred             -CeEEEecCC-HHHHHHHHHHHHHHHHH
Confidence             399999974 45688899888887754

>PRK06225 aspartate aminotransferase; Provisional

Probab=100.00  E-value=2.4e-42  Score=354.80  Aligned_cols=335  Identities=17%  Similarity=0.237  Sum_probs=269.4

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      ++.+.+++.+.+...   ....|++..|..+||+++|++++      +++++|++|+|+++++..+++.++ .+||+|++
T Consensus        43 ~~~~~~a~~~~~~~~---~~~~y~~~~g~~~lr~~ia~~l~------~~~~~v~~~~g~t~al~~~~~~~~-~~gd~vl~  112 (380)
T PRK06225         43 HEEVREAMIRCIEEG---EYCKYPPPEGFPELRELILKDLG------LDDDEALITAGATESLYLVMRAFL-SPGDNAVT  112 (380)
T ss_pred             CHHHHHHHHHHHhcC---CCCCCCCCcchHHHHHHHHHhcC------CCCCcEEEeCCHHHHHHHHHHHhc-CCCCEEEE
Confidence            678888888777642   24579999999999999999974      667899999999999999999998 78999999


Q ss_pred             cCCcCcchHHHHHHhCCeEEEEecCC-CCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHH
Q 009517          221 PIPQYPLYSASIALHGGTLVPYYLDE-ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC  299 (533)
Q Consensus       221 ~~p~~~~~~~~~~~~g~~~~~v~~~~-~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~  299 (533)
                      ++|+|..+...++..|++++.++++. +++|.+|++.+++.+++      ++++|++++|+||||.++|.+++++|+++|
T Consensus       113 ~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~------~~~~v~l~~p~NptG~~~~~~~~~~i~~~a  186 (380)
T PRK06225        113 PDPGYLIIDNFASRFGAEVIEVPIYSEECNYKLTPELVKENMDE------NTRLIYLIDPLNPLGSSYTEEEIKEFAEIA  186 (380)
T ss_pred             cCCCCcchHHHHHHhCceEEeeccccccCCccCCHHHHHhhcCC------CceEEEEeCCCCCCCcCCCHHHHHHHHHHH
Confidence            99999999999999999999999753 44689999999998876      789999999999999999999999999999


Q ss_pred             HHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHh
Q 009517          300 KKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV  379 (533)
Q Consensus       300 ~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~  379 (533)
                      +++|+++|+||+|.+|..+ . .  ...    .+   ++ .++|++.||||.+ |++|+|+||+++   ++++++.+...
T Consensus       187 ~~~~~~ii~De~y~~~~~~-~-~--~~~----~~---~~-~~~i~~~s~SK~~-g~~G~RiG~i~~---~~~l~~~~~~~  250 (380)
T PRK06225        187 RDNDAFLLHDCTYRDFARE-H-T--LAA----EY---AP-EHTVTSYSFSKIF-GMAGLRIGAVVA---TPDLIEVVKSI  250 (380)
T ss_pred             HHCCcEEEEehhHHHHhcc-C-C--chh----hc---CC-CCEEEEeechhhc-CCccceeEEEec---CHHHHHHHHHH
Confidence            9999999999999886532 1 1  111    11   22 3578999999999 899999999998   89999988876


Q ss_pred             hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceE-ecCCceeEEecccCCCH
Q 009517          380 ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITC-NKAEGAMYLFPRIQLPE  458 (533)
Q Consensus       380 ~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~-~~~~gg~~~~~~~~~~~  458 (533)
                      ....++.+.++|.++..+|...          .++.+++++.++++++.+.+.|++++|+.+ ..|.+|.|+|+++....
T Consensus       251 ~~~~~~~~~~~~~~a~~~l~~~----------~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~  320 (380)
T PRK06225        251 VINDLGTNVIAQEAAIAGLKVK----------DEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYPSHGNMMVIDISEAG  320 (380)
T ss_pred             HhcccCCCHHHHHHHHHHHhcc----------hHHHHHHHHHHHHHHHHHHHHHHhCcCCccccCCCCCeEEEEEccccc
Confidence            5556778899999988887532          133455666777788889999988767543 34556777887654211


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHHHHHH
Q 009517          459 KAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~~~  529 (533)
                                . +...+..++ .++||.+.||..|+...+.+++|++++.+++++++++++|++++++++.
T Consensus       321 ----------~-~~~~l~~~l-~~~gi~v~~g~~~~~~~~~~~iR~s~~~~~e~l~~~~~~l~~~~~~~~~  379 (380)
T PRK06225        321 ----------I-DPEDLVEYL-LERKIFVRQGTYTSKRFGDRYIRVSFSIPREQVEVFCEEFPDVVETLRT  379 (380)
T ss_pred             ----------C-CHHHHHHHH-HHCCEEEcCCcccCcCCCCceEEEEeCCCHHHHHHHHHHHHHHHHHhhc
Confidence                      1 234444454 4789999999887644456699999998889999999999999987754

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=100.00  E-value=1.2e-42  Score=354.30  Aligned_cols=317  Identities=19%  Similarity=0.197  Sum_probs=243.7

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      |+.+++++.+.+..     ...|++.. ..+||+++|++++      +++++|++|+|+++++..+++.+.  +||.|++
T Consensus        37 ~~~~~~a~~~~~~~-----~~~Y~~~~-~~~Lr~aia~~~~------v~~~~I~it~G~~~~i~~~~~~l~--~g~~vlv  102 (360)
T PRK07392         37 PESVIAAIQSALSA-----LRHYPDPD-YRELRLALAQHHQ------LPPEWILPGNGAAELLTWAGRELA--QLRAVYL  102 (360)
T ss_pred             CHHHHHHHHHHHHH-----hhcCCCcC-HHHHHHHHHHHhC------cChhhEEECCCHHHHHHHHHHHhC--CCCeEEE
Confidence            68888888776654     45698765 6899999999983      788999999999999999999864  6889999


Q ss_pred             cCCcCcchHHHHHHhCCeEEEEecCCCCCC---CCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHH
Q 009517          221 PIPQYPLYSASIALHGGTLVPYYLDEATGW---GLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD  297 (533)
Q Consensus       221 ~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~---~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~  297 (533)
                      ++|+|..|...++.+|.+++.++++.++++   ..+++.+++..       .++++++++|||||||.++++++   |.+
T Consensus       103 ~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~nP~NPTG~~~~~~~---l~~  172 (360)
T PRK07392        103 ITPAFGDYRRALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQL-------TPNDGLLLNNPHNPTGKLWSREA---ILP  172 (360)
T ss_pred             ECCCcHHHHHHHHHcCCeEEEEecccccCCcccccCHHHHHHhc-------cCCCEEEEeCCCCCCCCCcCHHH---HHH
Confidence            999999999999999999999999876554   24566555432       16789999999999999999665   455


Q ss_pred             HHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHH
Q 009517          298 FCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY  377 (533)
Q Consensus       298 l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~  377 (533)
                      +++++++ +|+||+|.+|.+++.  ..++....      ....++|+++||||.| |++|+|+||+++   ++++++.+.
T Consensus       173 l~~~~~~-~IiDE~y~~~~~~~~--~~s~~~~~------~~~~~vi~i~S~SK~~-~l~GlRiG~~v~---~~~~~~~~~  239 (360)
T PRK07392        173 LLEQFAL-VVVDEAFMDFLPPDA--EQSLIPCL------AEYPNLIILRSLTKFY-SLPGLRLGYAIA---HPDRLQRWQ  239 (360)
T ss_pred             HHHHCCE-EEEECchhhhccCcc--ccchHHHh------hcCCCEEEEEechhhh-cCCchheeeeeC---CHHHHHHHH
Confidence            6677775 666999999887542  23332222      2234689999999999 899999999998   899988887


Q ss_pred             HhhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCC
Q 009517          378 KVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLP  457 (533)
Q Consensus       378 ~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~  457 (533)
                      +.. ..++++.++|.++..+|++.           .+.+.+++.++++++.+.+.|++++|+.+. +.+++|+|++++. 
T Consensus       240 ~~~-~~~~~s~~~q~~~~~~l~~~-----------~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-~~~~~fl~~~~~~-  305 (360)
T PRK07392        240 QWR-DPWPVNGLAAAAAIAALADR-----------DFQQQTWAWLPPAREALFQGLASLPGLTPL-PSAANFLLVQSQG-  305 (360)
T ss_pred             hhC-CCCCCCHHHHHHHHHHhccH-----------HHHHHHHHHHHHHHHHHHHHHHhCCCcEEC-CCCCCEEEEEcCC-
Confidence            654 34778999999999998632           223445567888999999999988888765 4788999976541 


Q ss_pred             HHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHH
Q 009517          458 EKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDF  523 (533)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~  523 (533)
                                   ++.+++..+++++||.+.||..|+. .+.++|||+++..++ .+++.+.|+++
T Consensus       306 -------------~~~~l~~~ll~~~gv~v~pg~~f~~-~~~~~iRi~~~~~~~-~~~l~~al~~~  356 (360)
T PRK07392        306 -------------SALQLQEKLLQQHRILIRDCLSFPE-LGDRYFRVAVRTEAE-NQRLLEALAAI  356 (360)
T ss_pred             -------------CHHHHHHHHHhhCCEEEEeCCCCCC-CCCCEEEEEeCCHHH-HHHHHHHHHHH
Confidence                         2445566777889999999999973 345699999985432 24444444433

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=1.6e-42  Score=355.10  Aligned_cols=312  Identities=16%  Similarity=0.268  Sum_probs=244.7

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      |+.+++++.+ ...     ...|++. +..+||+++|++++      +++++|++|+|+++++..+++.++ ++||+|++
T Consensus        67 ~~~v~~a~~~-~~~-----~~~Yp~~-~~~~lr~~ia~~~~------~~~~~I~~t~Ga~~~i~~~~~~~~-~~gd~Vlv  132 (380)
T PLN03026         67 PPEVLEALGN-MKF-----PYVYPDP-ESRRLRAALAEDSG------LESENILVGCGADELIDLLMRCVL-DPGDKIID  132 (380)
T ss_pred             CHHHHHHHHh-hHh-----hccCCCC-CHHHHHHHHHHHhC------cChhhEEEcCCHHHHHHHHHHHhc-CCCCEEEE
Confidence            5667666543 211     3458764 58999999999985      678999999999999999999988 89999999


Q ss_pred             cCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHH
Q 009517          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (533)
Q Consensus       221 ~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~  300 (533)
                      ++|+|..|...++..|++++.++++.  +|++|++.++++++..     ++++|++++||||||.+++.+++++|++.+ 
T Consensus       133 ~~P~y~~y~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~~~~~-----~~~~v~l~~P~NPTG~~~~~~~l~~l~~~~-  204 (380)
T PLN03026        133 CPPTFGMYVFDAAVNGAEVIKVPRTP--DFSLDVPRIVEAVETH-----KPKLLFLTSPNNPDGSIISDDDLLKILELP-  204 (380)
T ss_pred             cCCChHHHHHHHHHcCCEEEEeecCC--CCCcCHHHHHHHHhcc-----CCcEEEEeCCCCCCCCCCCHHHHHHHHhcC-
Confidence            99999999999999999999999853  5789999999998432     799999999999999999988888887653 


Q ss_pred             HcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhh
Q 009517          301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA  380 (533)
Q Consensus       301 ~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~  380 (533)
                         ++||+||+|.+|.+.+.  .   .....      ...++|+++||||.| |++|+|+||+++   ++++++.+.+..
T Consensus       205 ---~~vi~DeaY~~~~~~~~--~---~~~~~------~~~~viv~~SfSK~~-glaGlRiGy~~~---~~~~i~~l~~~~  266 (380)
T PLN03026        205 ---ILVVLDEAYIEFSTQES--R---MKWVK------KYDNLIVLRTFSKRA-GLAGLRVGYGAF---PLSIIEYLWRAK  266 (380)
T ss_pred             ---CEEEEECcchhhcCCcc--h---HHHHH------hCCCEEEEecchHhh-cCccccceeeec---CHHHHHHHHHhc
Confidence               89999999999776321  1   12111      223589999999999 899999999998   999999888766


Q ss_pred             hccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHH
Q 009517          381 SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKA  460 (533)
Q Consensus       381 ~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~  460 (533)
                      . .++.+.++|.++.++|++.           ++++++++.++++++.+.+.|++++++. +.|.+++|+|++++..   
T Consensus       267 ~-~~~~~~~~q~aa~~aL~~~-----------~~~~~~~~~~~~~r~~l~~~L~~~~~~~-~~p~~~~f~~~~~~~~---  330 (380)
T PLN03026        267 Q-PYNVSVAAEVAACAALSNP-----------KYLEDVKNALVEERERLFGLLKEVPFLE-PYPSDANFILCRVTSG---  330 (380)
T ss_pred             C-CCCCCHHHHHHHHHHhhCH-----------HHHHHHHHHHHHHHHHHHHHHHHCCCCe-ECCCCCeEEEEECCCC---
Confidence            4 4678899999999988631           3356778889999999999999984444 4677888999765411   


Q ss_pred             HHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHH
Q 009517          461 IKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTD  522 (533)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~  522 (533)
                               .++..++..++ ++||.+++|..++   +.+++|||++.. ++++.++++|++
T Consensus       331 ---------~~~~~~~~~l~-~~gI~v~~~~~~~---~~~~lRis~~~~-~~~~~l~~al~~  378 (380)
T PLN03026        331 ---------RDAKKLKEDLA-KMGVMVRHYNSKE---LKGYIRVSVGKP-EHTDALMEALKQ  378 (380)
T ss_pred             ---------CCHHHHHHHHH-HCCeEEEECCCCC---CCCEEEEecCCH-HHHHHHHHHHHH
Confidence                     12344555554 7899999986643   234999999843 456777777654

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=9.8e-43  Score=355.11  Aligned_cols=328  Identities=18%  Similarity=0.236  Sum_probs=264.3

Q ss_pred             eeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHH
Q 009517           99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA  178 (533)
Q Consensus        99 ~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~  178 (533)
                      +++|+.|.|.+                      ..       |+.+.+++.+.+..      ..|.|..|..+||+++|+
T Consensus        31 ~i~l~~n~~~~----------------------~~-------~~~v~~a~~~~~~~------~~~~p~~g~~~lr~~ia~   75 (359)
T PRK03158         31 IVKLASNENPY----------------------GP-------SPKVKEAIAAHLDE------LALYPDGYAPELRTKVAK   75 (359)
T ss_pred             eEEecCCCCCC----------------------CC-------CHHHHHHHHHHHHH------hhcCCCCcHHHHHHHHHH
Confidence            89999998764                      21       57788887776653      245566789999999999


Q ss_pred             HHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHH
Q 009517          179 GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVK  258 (533)
Q Consensus       179 ~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~  258 (533)
                      +++      +++++|++|+|+++++..+++.++ ++||+|++++|+|+.|...+...|++++.++++   ++++|++.++
T Consensus        76 ~~~------~~~~~i~~t~G~~~~l~~~~~~~~-~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~---~~~~d~~~l~  145 (359)
T PRK03158         76 HLG------VDEEQLLFGAGLDEVIQMISRALL-NPGTNTVMAEPTFSQYRHNAIIEGAEVREVPLK---DGGHDLEAML  145 (359)
T ss_pred             HhC------CCHHHEEECCCHHHHHHHHHHHHh-CCCCEEEEcCCCHHHHHHHHHHcCCeEEEEecC---CCCcCHHHHH
Confidence            984      678999999999999999999998 799999999999999999999999999999987   3588999999


Q ss_pred             HHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCC
Q 009517          259 KQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEK  338 (533)
Q Consensus       259 ~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (533)
                      +.+++      +++++++++||||||.+++.+++.+|++.|+ +|++||+||+|.++.+.+..+  +......      .
T Consensus       146 ~~~~~------~~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~-~~~~ii~De~y~~~~~~~~~~--~~~~~~~------~  210 (359)
T PRK03158        146 KAIDE------QTKIVWICNPNNPTGTYVNHEELLSFLESVP-SHVLVVLDEAYYEYVTAEDYP--DTLPLLE------K  210 (359)
T ss_pred             HhcCC------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCcEEEEECchHhhcCCcccc--cHHHHHH------h
Confidence            88865      7899999999999999999999888888774 699999999999988754322  2212221      2


Q ss_pred             CceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHH
Q 009517          339 DISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGI  418 (533)
Q Consensus       339 ~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~  418 (533)
                      ..++|+++||||.| |++|+|+||+++   ++++++.+.+... .++++.++|.++..+|++.           ++++++
T Consensus       211 ~~~vi~~~S~SK~~-g~~GlRiG~~v~---~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~-----------~~~~~~  274 (359)
T PRK03158        211 YENLIVLRTFSKAY-GLAALRVGYGIA---SEELIEKLNIARP-PFNTTRIAQYAAIAALEDQ-----------AFLKEC  274 (359)
T ss_pred             cCCEEEEEechHhh-cCcchhhehhcC---CHHHHHHHHHhcC-CCCCCHHHHHHHHHHhcCH-----------HHHHHH
Confidence            23689999999999 899999999998   9999999887654 4788999999999998632           234556


Q ss_pred             HHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCC
Q 009517          419 LSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPG  498 (533)
Q Consensus       419 ~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g  498 (533)
                      ++.++++++.+.+.|++. |+.+.++ +|+|+|+++..              ++..++..++ ++||.+.||..|+. + 
T Consensus       275 ~~~~~~~~~~~~~~l~~~-~~~~~~~-~g~~i~~~~~~--------------~~~~~~~~l~-~~gv~v~~g~~f~~-~-  335 (359)
T PRK03158        275 VEKNAEGLEQYYAFCKEY-GLFYYPS-QTNFIFVDTGR--------------DANELFEALL-KKGYIVRSGAALGF-P-  335 (359)
T ss_pred             HHHHHHHHHHHHHHHHHC-CCeeCCC-cCcEEEEECCC--------------CHHHHHHHHH-HCCeEEeeCCCCCC-C-
Confidence            667888888999999888 8877655 56789976531              2344555554 68999999999973 3 


Q ss_pred             CceEEEEecCCcCcHHHHHHHHHHH
Q 009517          499 TWHFRCTILPQEDKIPAIVTRLTDF  523 (533)
Q Consensus       499 ~~~iRis~~~~~e~i~~~~~~l~~~  523 (533)
                       ++|||+++. .+++++++++|+++
T Consensus       336 -~~iRi~~~~-~~~~~~l~~al~~~  358 (359)
T PRK03158        336 -TGVRITIGL-KEQNDKIIELLKEL  358 (359)
T ss_pred             -CeEEEecCC-HHHHHHHHHHHHHh
Confidence             399999984 55679999988875

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=1.8e-42  Score=352.66  Aligned_cols=327  Identities=18%  Similarity=0.257  Sum_probs=263.3

Q ss_pred             eeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHH
Q 009517           99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA  178 (533)
Q Consensus        99 ~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~  178 (533)
                      +|+|+.|.+.+                      ++       |+.+++++.+.+...   ....|++ .|..+||+++|+
T Consensus        28 ~i~l~~~~~~~----------------------~~-------~~~~~~~~~~~~~~~---~~~~Y~~-~~~~~lr~~ia~   74 (356)
T PRK04870         28 MVKLDAMENPY----------------------RL-------PAELRAELGERLAEV---ALNRYPD-PRAAALKAALRA   74 (356)
T ss_pred             ceeCcCCCCCC----------------------CC-------CHHHHHHHHHHhhcc---ccccCCC-CCHHHHHHHHHH
Confidence            99999998764                      22       788999988877642   2567887 578999999999


Q ss_pred             HHHhhcCCCCCC-CCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHH
Q 009517          179 GIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEV  257 (533)
Q Consensus       179 ~~~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l  257 (533)
                      +++      ... ++|++|+|+++++..++++++ ++||+|++++|+|..|...++..|++++.+++++  +|++|++.+
T Consensus        75 ~~~------~~~~~~I~~t~G~~~~i~~~~~~~~-~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~--~~~~d~~~l  145 (356)
T PRK04870         75 AMG------VPAGADVLLGNGSDELIQLLALACA-KPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLTA--DFTLDLPAM  145 (356)
T ss_pred             HhC------cCCCCcEEEcCCHHHHHHHHHHHhc-CCCCEEEECCCCHHHHHHHHHHcCCEEEEecCCC--CCCCCHHHH
Confidence            985      333 589999999999999999998 8999999999999999999999999999999874  579999999


Q ss_pred             HHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCC
Q 009517          258 KKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE  337 (533)
Q Consensus       258 ~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~  337 (533)
                      +++++..     ++++|++++||||||.+++.+++++|+++|   ++++|+||+|..|.+.   ...+  .+       .
T Consensus       146 ~~~~~~~-----~~~~v~l~~p~NPtG~~~~~~~~~~i~~~~---~~~ii~De~y~~~~~~---~~~~--~~-------~  205 (356)
T PRK04870        146 LAAIAEH-----RPALVFLAYPNNPTGNLFDDADVERIIEAA---PGLVVVDEAYQPFAGD---SWLP--RL-------A  205 (356)
T ss_pred             HHHhhcC-----CCCEEEEcCCCCCCCCCCCHHHHHHHHHHC---CCEEEEECCchhhcCc---chHH--HH-------h
Confidence            9999753     789999999999999999999999999998   6889999999986542   1111  11       1


Q ss_pred             CCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHH
Q 009517          338 KDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDG  417 (533)
Q Consensus       338 ~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~  417 (533)
                      ...++|++.|||| + |++|+|+||+++   ++++++.+.... ..++.+.++|.++..++++           .+.+++
T Consensus       206 ~~~~vi~~~S~SK-~-~~~GlRiG~~i~---~~~~i~~~~~~~-~~~~~~~~~q~~a~~~l~~-----------~~~~~~  268 (356)
T PRK04870        206 RFPNLLVMRTVSK-L-GLAGLRLGYLAG---HPAWIAELDKVR-PPYNVNVLTQATALFALEH-----------VDVLDA  268 (356)
T ss_pred             hCCCEEEEecchh-h-hhHHHhhhhhhC---CHHHHHHHHHcc-CCCcCCHHHHHHHHHHHhC-----------HHHHHH
Confidence            2235899999999 7 889999999998   899999887765 3467888999888888752           133566


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCC
Q 009517          418 ILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVP  497 (533)
Q Consensus       418 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~  497 (533)
                      .+++++++++.+.+.|++++|+.+. +.+++|+|++++  .             ...++ ..|+++||.++||..|+ ..
T Consensus       269 ~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~--~-------------~~~~~-~~l~~~gI~v~~~~~f~-~~  330 (356)
T PRK04870        269 QAAQLRAERTRLAAALAALPGVTVF-PSAANFILVRVP--D-------------AAAVF-DGLKTRGVLVKNLSGMH-PL  330 (356)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcEEC-CCCCeEEEEECC--C-------------HHHHH-HHHHHCCEEEEECCCCC-CC
Confidence            7778889999999999998888654 556678886654  1             23333 56778999999999996 33


Q ss_pred             CCceEEEEecCCcCcHHHHHHHHHHH
Q 009517          498 GTWHFRCTILPQEDKIPAIVTRLTDF  523 (533)
Q Consensus       498 g~~~iRis~~~~~e~i~~~~~~l~~~  523 (533)
                      +.++|||+++. .+++++++++|+++
T Consensus       331 ~~~~iRis~~~-~~~~~~l~~al~~~  355 (356)
T PRK04870        331 LANCLRVTVGT-PEENAQFLAALKAA  355 (356)
T ss_pred             CCCeEEEeCCC-HHHHHHHHHHHHHh
Confidence            45699999984 45568888888765

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=1.1e-41  Score=348.52  Aligned_cols=318  Identities=20%  Similarity=0.288  Sum_probs=250.8

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      |+.+.+++.+....     ...|++..|. +||+++|++++      +++++|++|+|+++++..+++.++ ++||+|++
T Consensus        51 ~~~~~~al~~~~~~-----~~~Y~~~~g~-~lr~~ia~~~~------~~~~~i~~t~G~~~~l~~~~~~~~-~~gd~vli  117 (371)
T PRK05166         51 SPAVRRAFADIAEL-----LRLYPDPQGR-ALREAIAARTG------VPADRIILGNGSEDLIAVICRAVL-RPGDRVVT  117 (371)
T ss_pred             CHHHHHHHHHHHHH-----hhcCCCCcHH-HHHHHHHHHhC------cCHHHEEEcCCHHHHHHHHHHHhc-CCCCEEEE
Confidence            56677776654432     5679999984 99999999874      578899999999999999999998 89999999


Q ss_pred             cCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHH
Q 009517          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (533)
Q Consensus       221 ~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~  300 (533)
                      +.|+|+.+...++..|.+++.++++.  ++++|++++++++++      ++++|+++|||||||.+++.+++++|+++|+
T Consensus       118 ~~P~y~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~~~~------~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~  189 (371)
T PRK05166        118 LYPSFPLHEDYPTMMGARVERVTVTP--DLGFDLDALCAAVAR------APRMLMFSNPSNPVGSWLTADQLARVLDATP  189 (371)
T ss_pred             cCCChHHHHHHHHHcCCeEEEeecCC--CCCCCHHHHHHhhhc------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC
Confidence            99999999999999999999999874  468999999999876      6899999999999999999999999999987


Q ss_pred             HcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhh
Q 009517          301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA  380 (533)
Q Consensus       301 ~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~  380 (533)
                      + +++||+||+|.+|.+++.  ..+......+     .+.++|+++||||.| |++|+|+||+++  .++++++.+.+..
T Consensus       190 ~-~~~ii~De~y~~~~~~~~--~~~~~~~~~~-----~~~~vi~i~SfSK~~-~l~GlRiG~~i~--~~~~l~~~~~~~~  258 (371)
T PRK05166        190 P-ETLIVVDEAYAEYAAGDD--YPSALTLLKA-----RGLPWIVLRTFSKAY-GLAGLRVGYGLV--SDPELVGLLDRVR  258 (371)
T ss_pred             C-CcEEEEECcHHHhcCCcC--cccHHHHHhh-----cCCCEEEEeechHhh-hcchhheeeeec--CCHHHHHHHHHhc
Confidence            4 889999999999886432  3343333222     223589999999999 899999999775  2788888887655


Q ss_pred             hccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHH
Q 009517          381 SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKA  460 (533)
Q Consensus       381 ~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~  460 (533)
                       ..++++.++|.++..+|.+           .+++++.++.++++++.+.+.|++. |+.+ .|.+|+|+|++++.    
T Consensus       259 -~~~~~~~~~q~~~~~~l~~-----------~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~-~p~~g~fl~~~~~~----  320 (371)
T PRK05166        259 -TPFNVNGAAQAAALAALDD-----------EEHLAKGVALALAERERLKKELAEM-GYRI-APSRANFLFFDARR----  320 (371)
T ss_pred             -cCCCCCHHHHHHHHHHhcC-----------HHHHHHHHHHHHHHHHHHHHHHHHC-cCee-CCCcCCEEEEeCCC----
Confidence             3467889999888887753           1345667788899999999999998 8875 45667899976541    


Q ss_pred             HHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHH
Q 009517          461 IKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDF  523 (533)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~  523 (533)
                                ++..++..++ ++||.+.||..++.   .++|||+++..+ +.+++.+.|+++
T Consensus       321 ----------~~~~l~~~l~-~~gi~v~p~~~~~~---~~~iRi~~~~~~-~~~~l~~~l~~i  368 (371)
T PRK05166        321 ----------PASAVAEALL-RQGVIVKPWKQPGF---ETFIRVSIGSPE-ENDHFVAALDKV  368 (371)
T ss_pred             ----------CHHHHHHHHH-HCCeEEecCCCCCC---CCeEEEEcCCHH-HHHHHHHHHHHH
Confidence                      2344555554 57999999987652   349999998533 346666666554

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=1.1e-41  Score=347.71  Aligned_cols=333  Identities=17%  Similarity=0.207  Sum_probs=265.7

Q ss_pred             eeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHH
Q 009517           99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA  178 (533)
Q Consensus        99 ~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~  178 (533)
                      +++|+.|++.+                      +.       |+.+++++.+.+..     ...|++.. ..+||+++|+
T Consensus        34 ~~~l~~~~~~~----------------------~~-------~~~~~~a~~~~~~~-----~~~Y~~~~-~~~Lr~~ia~   78 (369)
T PRK08153         34 RARIGANESGF----------------------GP-------SPSVIAAMREAAAE-----IWKYGDPE-NHDLRHALAA   78 (369)
T ss_pred             eeEecCCCCCC----------------------CC-------CHHHHHHHHHHHHH-----hhcCCCCc-cHHHHHHHHH
Confidence            57999999874                      32       68888888776643     45688774 8899999999


Q ss_pred             HHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHH
Q 009517          179 GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVK  258 (533)
Q Consensus       179 ~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~  258 (533)
                      +++      +++++|++|+|+++++..+++.++ ++||.|++++|+|+.+...+...|.+++.+|++.+   ++|+++++
T Consensus        79 ~~~------~~~~~I~it~G~~~~l~~~~~~~~-~~gd~vlv~~p~y~~~~~~~~~~g~~~~~vp~~~~---~~~~~~l~  148 (369)
T PRK08153         79 HHG------VAPENIMVGEGIDGLLGLIVRLYV-EPGDPVVTSLGAYPTFNYHVAGFGGRLVTVPYRDD---REDLDALL  148 (369)
T ss_pred             HhC------CCHHHEEEcCCHHHHHHHHHHHhc-CCCCEEEECCCcchHHHHHHHHcCCeEEEeeCCCC---CCCHHHHH
Confidence            973      678999999999999999999988 89999999999999999999999999999998643   68999998


Q ss_pred             HHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCC
Q 009517          259 KQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEK  338 (533)
Q Consensus       259 ~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (533)
                      +.+...     ++++|++++||||||.++|.+++++|+++|+ ++++||+||+|.++.+++.  ..++.   .      .
T Consensus       149 ~~~~~~-----~~~~i~l~~P~NPtG~~~~~~~l~~l~~~~~-~~~~lI~DE~y~~~~~~~~--~~~~~---~------~  211 (369)
T PRK08153        149 DAARRE-----NAPLVYLANPDNPMGSWHPAADIVAFIEALP-ETTLLVLDEAYCETAPAGA--APPID---T------D  211 (369)
T ss_pred             HHhccc-----CCcEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCcEEEEeCchhhhcCccc--chhhh---h------c
Confidence            877543     7899999999999999999999999999887 4899999999999877542  22221   1      1


Q ss_pred             CceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHH
Q 009517          339 DISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGI  418 (533)
Q Consensus       339 ~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~  418 (533)
                      ..++|+++||||++ |++|+|+||+++   ++++++.+.+... .++.++++|.++..+|+++           ++++++
T Consensus       212 ~~~~i~~~SfSK~~-g~~GlRiG~~v~---~~~~~~~l~~~~~-~~~~s~~~q~~~~~~l~~~-----------~~~~~~  275 (369)
T PRK08153        212 DPNVIRMRTFSKAY-GLAGARVGYAIG---APGTIKAFDKVRN-HFGMNRIAQAAALAALKDQ-----------AYLAEV  275 (369)
T ss_pred             CCCEEEEecchHhc-cCcchheeeeec---CHHHHHHHHHhhc-CCCCCHHHHHHHHHHhcCH-----------HHHHHH
Confidence            23589999999999 899999999998   9999998887664 4778999999999998632           335667


Q ss_pred             HHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEE-cCCCCCCCC
Q 009517          419 LSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLV-PGSGFGQVP  497 (533)
Q Consensus       419 ~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~-pg~~f~~~~  497 (533)
                      ++.++++++.+.+.|++. |+.+. |.+++|+|++++...           .....++++ |.++||.++ ||...    
T Consensus       276 ~~~~~~~r~~~~~~L~~~-g~~~~-p~~~~f~~~~~~~~~-----------~~a~~l~~~-l~~~Gi~v~~p~~~~----  337 (369)
T PRK08153        276 VGKIAAARDRIAAIARAN-GLTPL-PSATNFVAIDCGRDG-----------AFARAVLDG-LIARDIFVRMPGVAP----  337 (369)
T ss_pred             HHHHHHHHHHHHHHHHHC-CCccC-CCcCcEEEEECCCCc-----------ccHHHHHHH-HHHCCeEEeeCCCCC----
Confidence            888889999999999887 77644 678889997653110           112334444 446899995 65422    


Q ss_pred             CCceEEEEecCCcCcHHHHHHHHHHHHHHHH
Q 009517          498 GTWHFRCTILPQEDKIPAIVTRLTDFHKNFM  528 (533)
Q Consensus       498 g~~~iRis~~~~~e~i~~~~~~l~~~l~~~~  528 (533)
                      +.++|||+++ ++++++.++++|+++++..+
T Consensus       338 ~~~~iRis~~-~~~~~~~~~~al~~~~~~~~  367 (369)
T PRK08153        338 LDRCIRVSCG-PDEELDLFAEALPEALEAAR  367 (369)
T ss_pred             CCCeEEEecC-CHHHHHHHHHHHHHHHHHhh
Confidence            2349999998 56788999999999887544

>PRK09105 putative aminotransferase; Provisional

Probab=100.00  E-value=2.1e-41  Score=345.35  Aligned_cols=326  Identities=15%  Similarity=0.195  Sum_probs=258.1

Q ss_pred             cceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHH
Q 009517           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (533)
Q Consensus        97 ~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~ai  176 (533)
                      +++++|+.|.+..                      +.       |+.+++++.+.+..     ...|++.. ..+||++|
T Consensus        43 ~~~i~l~~~~~~~----------------------~~-------~~~~~~a~~~~~~~-----~~~Y~~~~-~~~Lr~ai   87 (370)
T PRK09105         43 EGAVFLNANECPL----------------------GP-------SPAARDAAARSAAL-----SGRYDLEL-EDDLRTLF   87 (370)
T ss_pred             CCcEEecCCCCCC----------------------CC-------CHHHHHHHHHHHHH-----hcCCCCch-HHHHHHHH
Confidence            4589999998764                      22       78888888877654     23587765 89999999


Q ss_pred             HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHH
Q 009517          177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE  256 (533)
Q Consensus       177 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~  256 (533)
                      +++++      +++++|++|+|+++++..++..++ ++||+|++++|+|..|...++..|++++.+++++  +|.+|++.
T Consensus        88 a~~~~------v~~e~I~it~Gs~~ai~~~~~~l~-~~gd~Vli~~P~y~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~  158 (370)
T PRK09105         88 AAQEG------LPADHVMAYAGSSEPLNYAVLAFT-SPTAGLVTADPTYEAGWRAADAQGAPVAKVPLRA--DGAHDVKA  158 (370)
T ss_pred             HHHhC------cChhhEEEcCChHHHHHHHHHHHc-CCCCEEEEeCCChHHHHHHHHHcCCeEEEecCCC--CCCCCHHH
Confidence            99864      678999999999999999999998 8999999999999999999999999999999864  57899999


Q ss_pred             HHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCC
Q 009517          257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG  336 (533)
Q Consensus       257 l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~  336 (533)
                      +++. .+      ++++|+++|||||||.+++.+++++|++.+ +++++||+||+|..|..  .   .+...+.      
T Consensus       159 l~~~-~~------~~~~v~l~nP~NPTG~~~~~~~l~~l~~~~-~~~~~lIvDEaY~~f~~--~---~s~~~~~------  219 (370)
T PRK09105        159 MLAA-DP------NAGLIYICNPNNPTGTVTPRADIEWLLANK-PAGSVLLVDEAYIHFSD--A---PSVVDLV------  219 (370)
T ss_pred             HHhc-CC------CCCEEEEeCCCCCCCcCcCHHHHHHHHHhC-CCCcEEEEECchHHhcc--C---cchHHHH------
Confidence            9876 23      688999999999999999999999999875 45899999999987542  2   1322332      


Q ss_pred             CCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHH
Q 009517          337 EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERD  416 (533)
Q Consensus       337 ~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~  416 (533)
                      +.+.++|++.||||+| |++|+|+||+++   ++++++.+...  ..+.++...|.++..+|.+           .++++
T Consensus       220 ~~~~~vi~~~SfSK~~-g~~GlRiG~~v~---~~~~i~~l~~~--~~~~~~~~~~~aa~~~L~~-----------~~~~~  282 (370)
T PRK09105        220 AQRKDLIVLRTFSKLY-GMAGMRLGLAAA---RPDLLAKLARF--GHNPLPVPAAAAGLASLRD-----------PKLVP  282 (370)
T ss_pred             hhCCCEEEEecccHhh-cCCccceeeeec---CHHHHHHHHhc--CCCCcCHHHHHHHHHHHhC-----------HHHHH
Confidence            1234689999999999 899999999998   99999888776  3355788888888888853           13456


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCC
Q 009517          417 GILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQV  496 (533)
Q Consensus       417 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~  496 (533)
                      .++++++++++.+.+.|+++ |+.+.+++|+||+ ++++.              +...+++.++ ++||.+  |..|+. 
T Consensus       283 ~~~~~~~~~r~~l~~~L~~~-g~~~~~~~~~f~~-~~~~~--------------~~~~l~~~L~-~~gI~v--~~~~~~-  342 (370)
T PRK09105        283 QRRAENAAVREDTIAWLKKK-GYKCTPSQANCFM-VDVKR--------------PAKAVADAMA-KQGVFI--GRSWPI-  342 (370)
T ss_pred             HHHHHHHHHHHHHHHHHHHC-CCCcCCCCCcEEE-EeCCC--------------CHHHHHHHHH-HCCcEE--ecCCCC-
Confidence            67788999999999999998 8888889998875 44431              2344555555 569998  444532 


Q ss_pred             CCCceEEEEecCCcCcHHHHHHHHHHHH
Q 009517          497 PGTWHFRCTILPQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       497 ~g~~~iRis~~~~~e~i~~~~~~l~~~l  524 (533)
                       ..+++||+++. ++++++++++|++++
T Consensus       343 -~~~~~Ris~~~-~~~~~~l~~al~~~~  368 (370)
T PRK09105        343 -WPNWVRVTVGS-EEEMAAFRSAFAKVM  368 (370)
T ss_pred             -CCCeEEEEcCC-HHHHHHHHHHHHHHh
Confidence             23499999984 456788888777654

>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]

Probab=100.00  E-value=4.7e-42  Score=320.36  Aligned_cols=384  Identities=17%  Similarity=0.192  Sum_probs=316.1

Q ss_pred             CcccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCC
Q 009517           62 NPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFS  141 (533)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p  141 (533)
                      ++-+..++..|.++|++...+++++        +.+..|||++|.++....+|+                         .
T Consensus        25 ~s~~s~V~maPpDpILGVTeAfk~D--------~n~~KiNLgvGaYRdd~gKp~-------------------------v   71 (427)
T KOG1411|consen   25 SSWWSHVEMAPPDPILGVTEAFKKD--------PNPKKINLGVGAYRDDNGKPY-------------------------V   71 (427)
T ss_pred             cchhhcCCCCCCCCcccHHHHHhcC--------CCcceeeecccceecCCCCee-------------------------e
Confidence            3467788889999999999999873        445699999999999888887                         5


Q ss_pred             HHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCE-----EEcCChHHHHHHHHHHhccCCCC
Q 009517          142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDI-----FLTDGASPAVHMMMQLLIRSEND  216 (533)
Q Consensus       142 ~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i-----~~t~G~~~al~~~~~~l~~~~gd  216 (533)
                      .++++++++++....  ...+|.|..|++++.+..++++.+.....+..++|     +.++|+......++..+.  ++.
T Consensus        72 L~~VrkAE~ql~~~~--ldKEYlpI~Gl~eF~k~sakLa~G~~s~~ik~~Ri~tvQ~lSGTGaLriga~Fl~~f~--~~~  147 (427)
T KOG1411|consen   72 LPSVRKAEQQLASLS--LDKEYLPITGLAEFNKLSAKLALGDNSPVIKEKRIVTVQTLSGTGALRVGAEFLARFY--PSR  147 (427)
T ss_pred             eHHHHHHHHHHhhhc--ccchhccccchHHHHHHHHHHhhcCCchhhhccceeEEEeccCcchhhHHHHHHHhhc--ccc
Confidence            677888888777633  47899999999999999999996543333444444     455565555555555554  688


Q ss_pred             eEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCC--CCCCccCCCHHHHHH
Q 009517          217 GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP--GNPTGQVLAEENQRA  294 (533)
Q Consensus       217 ~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p--~NPtG~~~s~~~l~~  294 (533)
                      .|++|+|+|.++.++++.+|..+..|.+....+.++|++.+.+.+.+.     ....++|++.  |||||+.++.++|++
T Consensus       148 ~I~ip~PTWgNh~~if~~ag~~~~~yrYyd~~t~gld~~g~ledl~~~-----p~gs~ilLhaCaHNPTGvDPt~eqw~k  222 (427)
T KOG1411|consen  148 DIYIPDPTWGNHKNIFKDAGLPVKFYRYYDPKTRGLDFKGMLEDLGEA-----PEGSIILLHACAHNPTGVDPTKEQWEK  222 (427)
T ss_pred             ceeecCCcccccCccccccCcceeeeeeccccccccchHHHHHHHhcC-----CCCcEEEeehhhcCCCCCCccHHHHHH
Confidence            999999999999999999999999999998888999999999999885     5666777754  999999999999999


Q ss_pred             HHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHH-
Q 009517          295 IVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVR-  373 (533)
Q Consensus       295 i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~-  373 (533)
                      |.++.++++++.|+|.+|++|.-+.  .......+...+   ..+.++++++||+|++ ||+|.|+|++.++|.+.+.. 
T Consensus       223 i~~~~~~k~~~pffDmAYQGfaSG~--~d~DA~avR~F~---~~g~~~~laQSyAKNM-GLYgERvGa~svvc~~ad~A~  296 (427)
T KOG1411|consen  223 ISDLIKEKNLLPFFDMAYQGFASGD--LDKDAQAVRLFV---EDGHEILLAQSYAKNM-GLYGERVGALSVVCKDADEAK  296 (427)
T ss_pred             HHHHhhhccccchhhhhhcccccCC--chhhHHHHHHHH---HcCCceEeehhhhhhc-chhhhccceeEEEecCHHHHH
Confidence            9999999999999999999976533  233333333333   3456789999999999 99999999998877666544 


Q ss_pred             ---HHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CC-ceEecCCc
Q 009517          374 ---EQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL--EG-ITCNKAEG  446 (533)
Q Consensus       374 ---~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~g-~~~~~~~g  446 (533)
                         ++++.+.. ++++|+..+..++..+|++++    ++..|..+++.|.+++..+|+.|.+.|+..  ++ |.++..+.
T Consensus       297 rV~SQlk~liRpmYSnPP~hGArIv~~Il~d~~----l~~~W~~evk~MadRi~~mR~~L~d~L~~~gs~~~W~hI~~QI  372 (427)
T KOG1411|consen  297 RVESQLKILIRPMYSNPPLHGARIVATILSDPD----LKNQWLGEVKGMADRIISMRQQLFDALEKEGSPGNWSHITKQI  372 (427)
T ss_pred             HHHHHHHHHhcccccCCCccchhhhhhccCChH----HHHHHHHHHHHHHHhhhhhHHHHhHHhhcCCCCccHHHHHHhh
Confidence               55555555 889999999999999999865    899999999999999999999999999875  33 88899999


Q ss_pred             eeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec-CCcCcHHHHHHHHHHHHH
Q 009517          447 AMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-PQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       447 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~~~~l~~~l~  525 (533)
                      |||+|.+++.                 +.+..+.+++.|+++       .+|    |||++ ++..++.++.++|.++.+
T Consensus       373 GMF~fTgl~p-----------------eQv~~l~ke~~iYmT-------~dG----RiS~aG~ss~nV~yLa~aih~vtk  424 (427)
T KOG1411|consen  373 GMFCFTGLNP-----------------EQVDWLTKEYHIYLT-------KDG----RISMAGLSSSNVPYLADAIHAVTK  424 (427)
T ss_pred             heeeecCCCH-----------------HHHHHHHhhheeeec-------cCc----eEeeccccccCCcccchhhHhHhc
Confidence            9999987761                 226678899999999       566    99997 899999999999988764

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=100.00  E-value=4.9e-41  Score=335.98  Aligned_cols=326  Identities=21%  Similarity=0.330  Sum_probs=267.6

Q ss_pred             CcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhc
Q 009517          132 DRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI  211 (533)
Q Consensus       132 ~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~  211 (533)
                      +.++||.++|+.+++++.+.+..     .+.|++.. ..+|+++++++++.     .++++|++++|+.+++..++++++
T Consensus        28 ssNenP~gp~~~~~~~~~~~~~~-----~~rYPd~~-~~~l~~a~a~~~~~-----~~~~~V~~gnGsde~i~~l~~~~~   96 (356)
T COG0079          28 SSNENPYGPPPKVIEAIRAALDK-----LNRYPDPD-YRELRAALAEYYGV-----VDPENVLVGNGSDELIELLVRAFV   96 (356)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHh-----hccCCCCc-HHHHHHHHHHHhCC-----CCcceEEEcCChHHHHHHHHHHhh
Confidence            44455666688889888887774     67899984 89999999999863     567899999999999999999999


Q ss_pred             cCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHH
Q 009517          212 RSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEEN  291 (533)
Q Consensus       212 ~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~  291 (533)
                       .+||+|+++.|+|..|...++.+|++++.++..+   |.+|++.+.+++.+      ++++|++||||||||..++.++
T Consensus        97 -~~gd~vl~~~Ptf~~Y~~~a~~~g~~~~~v~~~~---~~~d~~~~~~~~~~------~~~lv~i~nPNNPTG~~~~~~~  166 (356)
T COG0079          97 -EPGDTVLIPEPTFSMYEIAAQLAGAEVVKVPLKE---FRLDLDAILAAIRD------KTKLVFLCNPNNPTGTLLPREE  166 (356)
T ss_pred             -cCCCEEEEcCCChHHHHHHHHhcCCeEEEecccc---cccCHHHHHHhhhc------CCCEEEEeCCCCCCCCCCCHHH
Confidence             8999999999999999999999999999999875   89999999999987      7999999999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHH
Q 009517          292 QRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAE  371 (533)
Q Consensus       292 l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~  371 (533)
                      ++++++.+.+ +.+||+||+|.+|.  +    .+...++.      ...++|++.||||.| ||+|+|+||+++   +++
T Consensus       167 l~~l~~~~~~-~~~vVvDEAY~eF~--~----~~~~~l~~------~~~nlivlRTfSKa~-gLAGlRlGy~ia---~~~  229 (356)
T COG0079         167 LRALLEALPE-GGLVVIDEAYIEFS--P----ESSLELLK------YPPNLIVLRTFSKAF-GLAGLRVGYAIA---NPE  229 (356)
T ss_pred             HHHHHHhCCC-CcEEEEeCchhhcC--C----chhhhhcc------CCCCEEEEEecHHhh-hcchhceeeccC---CHH
Confidence            9999999988 99999999999954  3    12112221      133589999999999 999999999987   999


Q ss_pred             HHHHHHHhhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce-EecCCceeEE
Q 009517          372 VREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGIT-CNKAEGAMYL  450 (533)
Q Consensus       372 ~~~~l~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~~gg~~~  450 (533)
                      +++.+.+... .|+.+.+++.++.++|.+           .+++++..+.+++.|+++.+.|+.+ |+. +++++ +.|+
T Consensus       230 ~i~~l~~vr~-p~~v~~~a~~aa~aal~~-----------~~~~~~~~~~~~~~r~rl~~~l~~~-~~~~v~pS~-aNFv  295 (356)
T COG0079         230 LIAALNKVRP-PFNVSSPALAAAIAALRD-----------ADYLEESVERIREERERLYAALKAL-GLFGVFPSQ-ANFV  295 (356)
T ss_pred             HHHHHHHhcC-CCCCCHHHHHHHHHHccc-----------HHHHHHHHHHHHHHHHHHHHHHHhC-CCCeecCCC-CcEE
Confidence            9999998874 488999999999999974           2556778888999999999999999 455 45555 6677


Q ss_pred             ecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHHH
Q 009517          451 FPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~  526 (533)
                      +++++.            . .... +.+.|.++||.++.....  ....+++||+++..+|+ ++++++|+++++.
T Consensus       296 lv~~~~------------~-~~~~-l~~~L~~~giivR~~~~~--~~~~~~lRitvgt~een-~~ll~AL~~~~~~  354 (356)
T COG0079         296 LVRVPD------------A-EAAA-LAEALLKKGILVRDCSSV--GLLPGYLRITVGTPEEN-DRLLAALREVLKG  354 (356)
T ss_pred             EEECCC------------c-cHHH-HHHHHHHCCEEEEeCCCC--CCCCCeEEEEeCCHHHH-HHHHHHHHHHHhc
Confidence            765541            0 1112 335666789999997552  23344999999987776 8999988887654

>PRK07908 hypothetical protein; Provisional

Probab=100.00  E-value=1.3e-40  Score=337.85  Aligned_cols=324  Identities=19%  Similarity=0.266  Sum_probs=256.0

Q ss_pred             ceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHH
Q 009517           98 EILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA  177 (533)
Q Consensus        98 ~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia  177 (533)
                      +++||++|.+..                      .+       |+.+++++.+.+..     ...|++..|..+||+++|
T Consensus        23 ~~~~l~~~~~~~----------------------~~-------~~~~~~~~~~~~~~-----~~~Y~~~~g~~~lr~aia   68 (349)
T PRK07908         23 GLLDFAVNVRHD----------------------TP-------PEWLRERLAARLGD-----LAAYPSTEDERRARAAVA   68 (349)
T ss_pred             CeEEecCCCCCC----------------------CC-------CHHHHHHHHHHhhH-----hhcCCCccchHHHHHHHH
Confidence            499999998753                      22       68888888887764     457999999999999999


Q ss_pred             HHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHH
Q 009517          178 AGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEV  257 (533)
Q Consensus       178 ~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l  257 (533)
                      ++++      +++++|++|+|+++++..+++ +  .+| .++++.|+|..+...++..|.+++.++++++  |++|++.+
T Consensus        69 ~~~~------~~~~~I~it~Ga~~al~~~~~-l--~~~-~viv~~P~y~~~~~~~~~~G~~i~~v~~~~~--~~~d~~~l  136 (349)
T PRK07908         69 ARHG------RTPDEVLLLAGAAEGFALLAR-L--RPR-RAAVVHPSFTEPEAALRAAGIPVHRVVLDPP--FRLDPAAV  136 (349)
T ss_pred             HHhC------cChhhEEECCCHHHHHHHHHh-c--CCC-eEEEeCCCChHHHHHHHHcCCEEEeeccCcc--cCcChhHh
Confidence            9974      678999999999999999988 4  464 6778899999999999999999999999753  78898854


Q ss_pred             HHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCC
Q 009517          258 KKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE  337 (533)
Q Consensus       258 ~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~  337 (533)
                          ++      ++++++++|||||||.++|.+++   .++|+ ++.++|+||+|.++.+ +.  ..++..    .   +
T Consensus       137 ----~~------~~~~i~l~np~NPTG~~~~~~~l---~~l~~-~~~~iIvDe~y~~~~~-~~--~~~l~~----~---~  192 (349)
T PRK07908        137 ----PD------DADLVVIGNPTNPTSVLHPAEQL---LALRR-PGRILVVDEAFADAVP-GE--PESLAG----D---D  192 (349)
T ss_pred             ----cc------CCCEEEEcCCCCCCCCCcCHHHH---HHHHh-cCCEEEEECcchhhcc-CC--cccccc----c---c
Confidence                23      68899999999999999997655   55565 5788999999998754 32  233222    1   1


Q ss_pred             CCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHH
Q 009517          338 KDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDG  417 (533)
Q Consensus       338 ~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~  417 (533)
                      .+ ++|+++||||.+ |++|+|+||+++   ++++++.+.+... .++.+++.+.++..++.+.         ..+++++
T Consensus       193 ~~-~~i~i~S~SK~~-~l~GlRiG~~~~---~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~---------~~~~~~~  257 (349)
T PRK07908        193 LP-GVLVLRSLTKTW-SLAGLRVGYALG---APDVLARLTRGRA-HWPVGTLQLEAIAACCAPR---------AVAEAAA  257 (349)
T ss_pred             CC-CEEEEeeccccc-CCccceeeeeec---CHHHHHHHHhcCC-CCCccHHHHHHHHHHhccc---------chHHHHH
Confidence            22 589999999998 899999999998   8999998877653 3566777888777776521         2245677


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCC
Q 009517          418 ILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVP  497 (533)
Q Consensus       418 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~  497 (533)
                      ++++++++++.+.+.|+++ |+.+..|.+|+|+|++++  .             .. .+.+.|+++||.+.||..|+. .
T Consensus       258 ~~~~~~~~r~~l~~~L~~~-~~~~~~p~~g~~~~~~~~--~-------------~~-~~~~~l~~~gI~v~~g~~f~~-~  319 (349)
T PRK07908        258 DAARLAADRAEMVAGLRAV-GARVVDPAAAPFVLVRVP--D-------------AE-LLRKRLRERGIAVRRGDTFPG-L  319 (349)
T ss_pred             HHHHHHHHHHHHHHHHHhC-CcEeccCCCceEEEEECC--c-------------HH-HHHHHHHhCCEEEEECCCCCC-C
Confidence            8889999999999999998 899888899999997654  1             12 244667889999999999953 2


Q ss_pred             CCceEEEEecCCcCcHHHHHHHHHHHHH
Q 009517          498 GTWHFRCTILPQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       498 g~~~iRis~~~~~e~i~~~~~~l~~~l~  525 (533)
                      +.++||||++ +++++++++++|++++.
T Consensus       320 ~~~~vRis~~-~~~~~~~l~~al~~~~~  346 (349)
T PRK07908        320 DPDYLRLAVR-PRAEVPVLVQALAEILK  346 (349)
T ss_pred             CCCeEEEEeC-CCccHHHHHHHHHHHHh
Confidence            3459999996 45677988888887654

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=4.1e-41  Score=342.49  Aligned_cols=325  Identities=20%  Similarity=0.261  Sum_probs=256.3

Q ss_pred             eeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHH
Q 009517           99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA  178 (533)
Q Consensus        99 ~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~  178 (533)
                      +|+|+.|.|.+                      +.       |+.+.+++.+.+..    ....|++. |..+||+++|+
T Consensus        26 ~i~l~~~~~~~----------------------~~-------~~~~~~a~~~~~~~----~~~~y~~~-~~~~lr~aia~   71 (353)
T PRK05387         26 LIKLNTNENPY----------------------PP-------SPKVLEAIRAALGD----DLRLYPDP-NADALRQAIAA   71 (353)
T ss_pred             eeeccCCCCCC----------------------CC-------CHHHHHHHHHHhhh----hhhcCCCC-cHHHHHHHHHH
Confidence            89999999764                      21       57777777776654    24678766 56999999999


Q ss_pred             HHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHH
Q 009517          179 GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVK  258 (533)
Q Consensus       179 ~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~  258 (533)
                      +++      +++++|++|+|+++++..+++.++ ++||+|++++|+|+.|...++..|.+++.+++++  +|++|+++++
T Consensus        72 ~~~------~~~~~I~it~G~~~al~~~~~~l~-~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~  142 (353)
T PRK05387         72 YYG------LDPEQVFVGNGSDEVLAHAFLAFF-NHDRPLLFPDITYSFYPVYAGLYGIPYEEIPLDD--DFSIDVEDYL  142 (353)
T ss_pred             HhC------CCHHHEEEcCCHHHHHHHHHHHhc-CCCCEEEEeCCCHHHHHHHHHHcCCEEEEeecCC--CCCCCHHHHH
Confidence            984      778999999999999999999998 8999999999999999999999999999999864  5789999886


Q ss_pred             HHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCC
Q 009517          259 KQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEK  338 (533)
Q Consensus       259 ~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (533)
                      +          ++++|++++||||||.+++.+++++|+++++  ++++|+||+|.+|  .+. ...   .+..      .
T Consensus       143 ~----------~~~~v~~~~P~NPtG~~~~~~~~~~l~~~~~--~~~livDe~y~~~--~~~-~~~---~~~~------~  198 (353)
T PRK05387        143 R----------PNGGIIFPNPNAPTGIALPLAEIERILAANP--DSVVVIDEAYVDF--GGE-SAI---PLID------R  198 (353)
T ss_pred             h----------cCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC--CcEEEEeCccccc--CCc-chH---HHHh------h
Confidence            3          3578999999999999999999999988653  8999999999874  332 111   2211      1


Q ss_pred             CceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh--ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHH
Q 009517          339 DISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS--VNLCSNISGQILASLVMSPPKVGDESYESYCAERD  416 (533)
Q Consensus       339 ~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~--~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~  416 (533)
                      ..++|+++||||.+ |++|+|+||+++   ++++++.+.....  ..++.+.++|.++..+|.+.           ++.+
T Consensus       199 ~~~~i~~~S~SK~~-~~~GlR~G~~~~---~~~~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~~~-----------~~~~  263 (353)
T PRK05387        199 YPNLLVVQTFSKSR-SLAGLRVGFAIG---HPELIEALNRVKNSFNSYPLDRLAQAGAIAAIEDE-----------AYFE  263 (353)
T ss_pred             CCCEEEEEehhHhh-cchhhhceeeec---CHHHHHHHHHhhccCCCCCcCHHHHHHHHHHhcCH-----------HHHH
Confidence            23589999999999 899999999998   9999999887764  24577899999998888531           2345


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCC
Q 009517          417 GILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQV  496 (533)
Q Consensus       417 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~  496 (533)
                      ++++++.++++.+.+.|+++ |+.+. |.+++|+|++++  .          . +...+++. |.++||.+.+   |+..
T Consensus       264 ~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~--~----------~-~~~~~~~~-l~~~gi~v~~---~~~~  324 (353)
T PRK05387        264 ETRAKVIATRERLVEELEAL-GFEVL-PSKANFVFARHP--S----------H-DAAELAAK-LRERGIIVRH---FNKP  324 (353)
T ss_pred             HHHHHHHHHHHHHHHHHHHC-CCeEC-CCcCcEEEEECC--C----------C-CHHHHHHH-HHHCCEEEEE---CCCC
Confidence            67778889999999999998 88754 567788897654  1          1 23445545 4678999985   3322


Q ss_pred             CCCceEEEEecCCcCcHHHHHHHHHHHHH
Q 009517          497 PGTWHFRCTILPQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       497 ~g~~~iRis~~~~~e~i~~~~~~l~~~l~  525 (533)
                      ...++|||+++ +.+++++++++|++++.
T Consensus       325 ~~~~~iRis~~-~~~~~~~~~~~L~~~~~  352 (353)
T PRK05387        325 RIDQFLRITIG-TDEEMEALVDALKEILA  352 (353)
T ss_pred             CCCCeEEEEeC-CHHHHHHHHHHHHHHhh
Confidence            23459999998 45789999999988764

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=100.00  E-value=1.2e-40  Score=340.72  Aligned_cols=319  Identities=20%  Similarity=0.280  Sum_probs=255.8

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      |+.+.+++.+.+..     ...|++.. ..+||+++|++++      +++++|++|+|+++++..++..++ ++||+|++
T Consensus        47 ~~~~~~a~~~~~~~-----~~~y~~~~-~~~lr~~ia~~~~------~~~~~i~~t~G~~~~l~~~~~~l~-~~gd~vl~  113 (367)
T PRK02731         47 SPKAIEAIRAAADE-----LHRYPDGS-GFELKAALAEKFG------VDPERIILGNGSDEILELLARAYL-GPGDEVIY  113 (367)
T ss_pred             CHHHHHHHHHHHHh-----hcCCCCCc-HHHHHHHHHHHhC------cCHHHEEEcCCHHHHHHHHHHHhc-CCCCEEEE
Confidence            57778888777654     45788765 4799999999984      668899999999999999999988 79999999


Q ss_pred             cCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHH
Q 009517          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (533)
Q Consensus       221 ~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~  300 (533)
                      ++|+|..|...+...|++++.++.+   ++++|++.+++.+++      ++++|++++||||||.+++.+++++|++.|+
T Consensus       114 ~~p~y~~~~~~~~~~g~~~~~~~~~---~~~~~~~~l~~~~~~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~  184 (367)
T PRK02731        114 SEHGFAVYPIAAQAVGAKPVEVPAK---DYGHDLDAMLAAVTP------RTRLVFIANPNNPTGTYLPAEEVERFLAGVP  184 (367)
T ss_pred             ecCCHHHHHHHHHHcCCeEEEeccc---CCCCCHHHHHHHhCC------CCcEEEEeCCCCCCCcCCCHHHHHHHHHhCC
Confidence            9999999998889999999999873   568999999999875      7899999999999999999999999988875


Q ss_pred             HcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhh
Q 009517          301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA  380 (533)
Q Consensus       301 ~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~  380 (533)
                       +|+++|+||+|..+.+.+. ...++ ...      +...++|+++||||.+ |++|+|+||+++   ++++++.+.+..
T Consensus       185 -~~~~li~De~y~~~~~~~~-~~~~~-~~~------~~~~~~i~~~S~SK~~-g~~G~RiG~l~~---~~~~~~~l~~~~  251 (367)
T PRK02731        185 -PDVLVVLDEAYAEYVRRKD-YEDGL-ELV------AKFPNVVVTRTFSKAY-GLAGLRVGYGIA---PPEIIDALNRVR  251 (367)
T ss_pred             -CCcEEEEECcHHHhccCcC-cccHH-HHH------hhcCCEEEEeeehHhh-cCcccceeeeeC---CHHHHHHHHHcc
Confidence             6999999999999887543 12222 221      1223589999999998 889999999998   899999888765


Q ss_pred             hccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHH
Q 009517          381 SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKA  460 (533)
Q Consensus       381 ~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~  460 (533)
                      . .++.+.++|.++..+|++           .++++++++.++++++.+.+.|++. |+.+.+ .+|+|+|++++.+   
T Consensus       252 ~-~~~~~~~~~~~a~~~l~~-----------~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~g~~~~i~~~~~---  314 (367)
T PRK02731        252 Q-PFNVNSLALAAAVAALDD-----------DAFVEKSRALNAEGMAWLTEFLAEL-GLEYIP-SVGNFILVDFDDG---  314 (367)
T ss_pred             C-CCCCCHHHHHHHHHHhCC-----------HHHHHHHHHHHHHHHHHHHHHHHHC-CCccCC-CCceEEEEECCCC---
Confidence            3 466788999999998863           1335667788889999999999998 887764 4567889766311   


Q ss_pred             HHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHH
Q 009517          461 IKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~  525 (533)
                               .+...++.. |.++||.+.||..|+ .+  ++|||+++ +.++++.++++|+++++
T Consensus       315 ---------~~~~~~~~~-L~~~gI~v~~~~~~~-~~--~~iRis~~-~~~e~~~l~~aL~~~~~  365 (367)
T PRK02731        315 ---------KDAAEAYQA-LLKRGVIVRPVAGYG-LP--NALRITIG-TEEENRRFLAALKEFLA  365 (367)
T ss_pred             ---------CCHHHHHHH-HHHCCEEEEeCCCCC-CC--CeEEEecC-CHHHHHHHHHHHHHHHh
Confidence                     123445544 557899999998886 23  39999997 45678999999988764

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=1.1e-40  Score=339.76  Aligned_cols=306  Identities=20%  Similarity=0.284  Sum_probs=243.2

Q ss_pred             ccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCC-CeEEEcCCcCcchHHHHHHhCCe
Q 009517          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-DGILCPIPQYPLYSASIALHGGT  238 (533)
Q Consensus       160 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vlv~~p~~~~~~~~~~~~g~~  238 (533)
                      ...|++.. ..+||+++|++++      +++++|++|+|+++++..++++++ .+| ++|++++|+|..|...++..|.+
T Consensus        53 ~~~Y~~~~-~~~lr~~ia~~~~------~~~~~I~~t~G~~~~l~~~~~~~~-~~g~~~vlv~~p~y~~~~~~~~~~g~~  124 (364)
T PRK04781         53 TRRYPDPQ-PPGLRSALAALYG------CAPEQLLIGRGSDEAIDLLVRALC-VPGRDAVLVTPPVFGMYAVCARLQNAP  124 (364)
T ss_pred             hccCCCCC-HHHHHHHHHHHhC------cChHHEEEeCCHHHHHHHHHHHhc-CCCCCeEEEcCCChHHHHHHHHHcCCE
Confidence            45688765 6899999999984      678999999999999999999998 788 79999999999999989999999


Q ss_pred             EEEEecCC-CCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccc
Q 009517          239 LVPYYLDE-ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY  317 (533)
Q Consensus       239 ~~~v~~~~-~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~  317 (533)
                      ++.++++. +++|.+|++++++.+...     ++++|++++||||||.+++.+++++|+++|+ ++++||+||+|.+|.+
T Consensus       125 ~~~v~~~~~~~~~~~d~~~l~~~~~~~-----~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~-~~~~iI~Deay~~f~~  198 (364)
T PRK04781        125 LVEVPLVDGADGFHADVPAIVAAALAS-----NAKLVFLCSPSNPAGSAIALDQIERALQALQ-GKALVVVDEAYGEFSD  198 (364)
T ss_pred             EEEEecCCCccCCCcCHHHHHHHHhcc-----CCeEEEEcCCCCCCCCCcCHHHHHHHHHhCC-CCcEEEEeCcchhhcC
Confidence            99999853 456788999987665432     7899999999999999999999999999885 4799999999999775


Q ss_pred             cCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhccccCChHHHHHHHHH
Q 009517          318 VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLV  397 (533)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~~  397 (533)
                      ..     +...+..      ...++|+++||||+| |+||+|+||+++   ++++++.+.+... .++.+.++|.++..+
T Consensus       199 ~~-----~~~~~~~------~~~~vi~~~SfSK~~-gl~GlRvGy~v~---~~~l~~~l~~~~~-~~~~~~~~~~~a~~~  262 (364)
T PRK04781        199 VP-----SAVGLLA------RYDNLAVLRTLSKAH-ALAAARIGSLIA---NAELIAVLRRCQA-PYPVPTPCAALAEQA  262 (364)
T ss_pred             Cc-----chHHHHh------hCCCEEEEecChhhc-ccccceeeeeeC---CHHHHHHHHhccC-CCCCCHHHHHHHHHH
Confidence            22     1112221      233689999999999 899999999998   9999999987764 467888999998888


Q ss_pred             cCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHH
Q 009517          398 MSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCR  477 (533)
Q Consensus       398 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (533)
                      |.++.     +    .+..+..+.++++++.+.+.|++++|+..+.|.+|+|+|++++  .             ...+ .
T Consensus       263 l~~~~-----~----~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~g~f~~~~~~--~-------------~~~~-~  317 (364)
T PRK04781        263 LSAPA-----L----AVTARRVAEVRAERERLHAALAQLPGVRRVYPSQGNFLLVRFD--D-------------AEAA-F  317 (364)
T ss_pred             Hhccc-----H----HHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcC--C-------------HHHH-H
Confidence            87532     1    2233444567889999999999887776556788899997654  1             2233 3


Q ss_pred             HHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHH
Q 009517          478 RLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDF  523 (533)
Q Consensus       478 ~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~  523 (533)
                      +.|.++||.|+||..|+..  .+++||+++.. ++.+.++++|+++
T Consensus       318 ~~l~~~gI~v~~~~~~~~~--~~~~Ris~~~~-~~~~~l~~al~~~  360 (364)
T PRK04781        318 QALLAAGVVVRDQRAAPRL--SDALRITLGTP-EQNDRVLAALQRT  360 (364)
T ss_pred             HHHHHCCeEEeeCCCCCCC--CCeEEEeCCCH-HHHHHHHHHHHHH
Confidence            5567899999999877522  34999999854 4457777777654

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=3.4e-40  Score=334.91  Aligned_cols=314  Identities=20%  Similarity=0.335  Sum_probs=243.5

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      |+.+++++.+.+...   ....|++.. ..+||+++|++++      +++++|++|+|+++++..+++.++ ++||+|++
T Consensus        37 p~~~~~a~~~~~~~~---~~~~y~~~~-~~~lr~~ia~~~~------~~~~~i~it~G~~~~l~~~~~~l~-~~gd~Vlv  105 (351)
T PRK14807         37 PEEVIKNIQEIVKSS---QVNIYPDPT-AEKLREELARYCS------VVPTNIFVGNGSDEIIHLIMLAFI-NKGDVVIY  105 (351)
T ss_pred             CHHHHHHHHHHhhcC---cccCCCCcc-HHHHHHHHHHHhC------CCcccEEEecCHHHHHHHHHHHhc-CCCCEEEE
Confidence            788999988777532   246687654 7899999999974      678999999999999999999998 89999999


Q ss_pred             cCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHH
Q 009517          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (533)
Q Consensus       221 ~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~  300 (533)
                      ++|+|..|...++..|++++.+++++  +|++|++.+++++++.     ++++|++++||||||.+++.+++++|   |+
T Consensus       106 ~~p~y~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~~~~~-----~~k~v~l~~p~NPtG~~~~~~~l~~l---~~  175 (351)
T PRK14807        106 PHPSFAMYSVYSKIAGAVEIPVKLKE--DYTYDVGSFIKVIEKY-----QPKLVFLCNPNNPTGSVIEREDIIKI---IE  175 (351)
T ss_pred             eCCChHHHHHHHHHcCCeEEEeecCC--CCCCCHHHHHHHhhcc-----CCCEEEEeCCCCCCCCCCCHHHHHHH---HH
Confidence            99999999999999999999999864  5789999999999753     78999999999999999997666665   45


Q ss_pred             HcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhh
Q 009517          301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA  380 (533)
Q Consensus       301 ~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~  380 (533)
                      +++.++|+||+|.++ + +. ...+   ..      ....++|+++||||.+ |+||+|+||+++   ++++++.+....
T Consensus       176 ~~~~~~ivDe~y~~~-~-~~-~~~~---~~------~~~~~vi~~~S~SK~~-~~~GlRiG~~v~---~~~~~~~~~~~~  239 (351)
T PRK14807        176 KSRGIVVVDEAYFEF-Y-GN-TIVD---VI------NEFENLIVLRTLSKAF-GLAGLRVGYAVA---NENILKYLNLVK  239 (351)
T ss_pred             hCCCEEEEeCcchhh-c-cc-chHH---Hh------hhCCCEEEEecchHhc-ccchhceeeeec---CHHHHHHHHHcc
Confidence            667889999999885 2 32 1111   11      1223689999999999 899999999998   999999887765


Q ss_pred             hccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHH
Q 009517          381 SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKA  460 (533)
Q Consensus       381 ~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~  460 (533)
                      . .++.+.+.|.++..+|.+            .+.++..+.++++++.+.+.|++++|+.+.+ .+|+|+|++++     
T Consensus       240 ~-~~~~~~~~q~~~~~~l~~------------~~~~~~~~~~~~~r~~l~~~l~~~~g~~~~~-~~~~~~~i~~~-----  300 (351)
T PRK14807        240 S-PYNINSLSQVIALKVLRT------------GVLKERVNYILNERERLIKELSKIPGIKVYP-SKTNFILVKFK-----  300 (351)
T ss_pred             C-CCCcCHHHHHHHHHHHhH------------HHHHHHHHHHHHHHHHHHHHHHhCCCcEECc-CCccEEEEEcC-----
Confidence            4 366788999999888852            1234455567788888999998888887654 55678896654     


Q ss_pred             HHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHH
Q 009517          461 IKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l  524 (533)
                                +...++ +.|.++||.+.++..+.  ...++|||+++.. ++.+.+++.|++++
T Consensus       301 ----------~~~~~~-~~l~~~gV~v~~~~~~~--~~~~~iRis~~~~-~~~~~l~~~l~~~~  350 (351)
T PRK14807        301 ----------DADYVY-QGLLERGILVRDFSKVE--GLEGALRITVSSC-EANDYLINGLKELL  350 (351)
T ss_pred             ----------CHHHHH-HHHHHCCEEEEECCCCC--CCCCeEEEEcCCH-HHHHHHHHHHHHhh
Confidence                      123333 45567899999865432  2234999999854 34577777776643

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=100.00  E-value=2.1e-40  Score=333.72  Aligned_cols=298  Identities=15%  Similarity=0.192  Sum_probs=230.2

Q ss_pred             ccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeE
Q 009517          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTL  239 (533)
Q Consensus       160 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~  239 (533)
                      ...|++.. ..+||+++|++++      +++++|++|+|+++++..+++. + ++| .|++++|+|..|...++..|+++
T Consensus        34 ~~~Yp~~~-~~~lr~~ia~~~~------~~~~~I~it~Gs~~~l~~~~~~-~-~~~-~vv~~~P~y~~y~~~~~~~G~~v  103 (332)
T PRK06425         34 ISIYPEIS-YTDIEDQIKIYTQ------GLKIKVLIGPGLTHFIYRLLSY-I-NVG-NIIIVEPNFNEYKGYAFTHGIRI  103 (332)
T ss_pred             cccCcCcC-HHHHHHHHHHHhC------CCcceEEECCCHHHHHHHHHHH-h-CCC-cEEEeCCChHHHHHHHHHcCCeE
Confidence            44687765 7899999999986      6789999999999999999974 5 576 57777999999999999999999


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccC
Q 009517          240 VPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVP  319 (533)
Q Consensus       240 ~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~  319 (533)
                      +.+|++.   +++|.+.++    ..     ++++|++++||||||.+++.+++++|+++|++++++||+||+|.+|.+++
T Consensus       104 ~~vp~~~---~~~~~~~l~----~~-----~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~  171 (332)
T PRK06425        104 SALPFNL---INNNPEILN----NY-----NFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNR  171 (332)
T ss_pred             EEEeCCc---ccCcHHHHh----hc-----CCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhcccccc
Confidence            9999874   355655443    22     68999999999999999999999999999999999999999999987643


Q ss_pred             CCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhccccCChHHHHHHHHHcC
Q 009517          320 EKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMS  399 (533)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~~L~  399 (533)
                      .   .+...+..      ...++|+++||||++ ||||+|+||+++   ++++++.+.+... .+..+..++.++.. . 
T Consensus       172 ~---~~~~~~~~------~~~~vi~~~SfSK~~-~l~GlRiGy~v~---~~~li~~l~~~~~-~~~~~~~~~~~l~~-~-  235 (332)
T PRK06425        172 A---EEDVLLNR------SYGNVIIGRSLTKIL-GIPSLRIGYIAT---DDYNMKISRKITE-PWSVCDPAIDFIRS-I-  235 (332)
T ss_pred             c---hhHHHHhc------cCCCEEEEeecHHhc-CCchhhheeeec---CHHHHHHHHHcCC-CCccCHHHHHHHHH-h-
Confidence            1   23323221      223699999999999 899999999998   9999998877543 23334333322211 1 


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHH
Q 009517          400 PPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRL  479 (533)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  479 (533)
                                ....+++++++.++++++.+.+.|+++ |+.+..+.+|+|+|++++               ++..++..+
T Consensus       236 ----------~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~~~~g~f~~~~~~---------------~~~~~~~~l  289 (332)
T PRK06425        236 ----------DLDYVAKHSLDIMENERSYLINNLEAM-GFRAAGDPSANFITFMIP---------------DAHDFYSYL  289 (332)
T ss_pred             ----------hhHHHHHHHHHHHHHHHHHHHHHHHHC-CCEECCCCCceEEEEEcC---------------CHHHHHHHH
Confidence                      022345677889999999999999998 888775556678886543               134445555


Q ss_pred             HHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHH
Q 009517          480 LNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       480 l~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l  524 (533)
                      + ++||.++||..|+ ..+.++|||+++.. ++.+.++++|++++
T Consensus       290 ~-~~gi~v~~~~~f~-~~~~~~iRis~~~~-~~~~~l~~al~~~~  331 (332)
T PRK06425        290 L-KNGILVRLLDDYE-CLGEQYIRIAIRRR-SFNIKLVNALRNFL  331 (332)
T ss_pred             H-HCCeEEEECCCCC-CCCCCEEEEEeCCH-HHHHHHHHHHHHHh
Confidence            5 5799999999996 33456999999865 45688888887664

>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]

Probab=100.00  E-value=2.7e-40  Score=318.38  Aligned_cols=353  Identities=20%  Similarity=0.219  Sum_probs=282.4

Q ss_pred             ccccCCCcccHHHHHHHHHHHH-hhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCe
Q 009517          160 TGAYSHSQGIKGLRDTIAAGIE-ARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGT  238 (533)
Q Consensus       160 ~~~Y~~~~G~~~lr~aia~~~~-~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~  238 (533)
                      ..+|++..|.++|...+.++.. ..+......-+|++|+|.+.+++.+++.++ +.||.|++..++|+......+..|++
T Consensus        93 alQYg~s~G~peLl~fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~~-N~gd~vlie~~ty~~AL~s~~a~gv~  171 (472)
T KOG0634|consen   93 ALQYGQSSGIPELLLFIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTLI-NRGDHVLIEEYTYPSALQSMEALGVK  171 (472)
T ss_pred             hhccccccCcHHHHHHHHHhccccccCCCCCCceEEEecCCchHHHHHHHHhh-cCCCceEEecccchHHHHhccccCce
Confidence            6789999999999999999766 233333444589999999999999999999 99999999999999999999999999


Q ss_pred             EEEEecCCCCCCCCCHHHHHHHHHHHHhc---CCCeeEEEEe-CCCCCCccCCCHHHHHHHHHHHHHcCCEEEEcccccc
Q 009517          239 LVPYYLDEATGWGLETSEVKKQLEAAKAK---GITVRALVVI-NPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE  314 (533)
Q Consensus       239 ~~~v~~~~~~~~~ld~~~l~~~i~~~~~~---g~~~~~iil~-~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~  314 (533)
                      +++|+++++   |+++|.|++.+......   .+++++++.. +-+||||..++.+..++|.++|++|+++||+||+|.-
T Consensus       172 ~ipv~md~~---Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdpYy~  248 (472)
T KOG0634|consen  172 IIPVKMDQD---GIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDPYYF  248 (472)
T ss_pred             EEeccccCC---CCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCccce
Confidence            999999866   89999999999876332   2456555544 4599999999999999999999999999999999998


Q ss_pred             ccccC-------CCCcccHHHHHh----hcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-c
Q 009517          315 NVYVP-------EKKFHSFKKVSR----SMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-V  382 (533)
Q Consensus       315 ~~~~~-------~~~~~~~~~~~~----~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~  382 (533)
                      +.|+.       ..+..+...+..    .....+-+++||...||||.+ + ||+|+||+.+   ++-+++.+-.... .
T Consensus       249 Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKii-a-PGlRlG~it~---~~~~l~ril~~ae~~  323 (472)
T KOG0634|consen  249 LQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKII-A-PGLRLGWITG---NSLFLKRILDLAEVA  323 (472)
T ss_pred             eeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhh-c-CcceeEEeec---CHHHHHHHhhhccee
Confidence            88862       223333222222    222226788999999999998 4 8999999998   8878877766665 7


Q ss_pred             cccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC--ceEecCCceeEEecccCCCHH
Q 009517          383 NLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL-EG--ITCNKAEGAMYLFPRIQLPEK  459 (533)
Q Consensus       383 ~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~g--~~~~~~~gg~~~~~~~~~~~~  459 (533)
                      +.+++.+.|.++.++|+..     .-+.|.+++.+++..|..|++.+..+|.+. |.  .++++|.+|||+|++++.+. 
T Consensus       324 t~~pSg~sq~iv~a~l~~w-----gqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P~aGmFiwv~i~~~~-  397 (472)
T KOG0634|consen  324 TSGPSGFSQGIVYAMLKRW-----GQEGFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHPPKAGMFIWVEIPYIN-  397 (472)
T ss_pred             ecCcccccHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCCcceEEEEEecccc-
Confidence            7889999999999998742     234567788899999999999999999884 54  67889999999998775221 


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCc----eEEEEec-CCcCcHHHHHHHHHHHHHHHHHH
Q 009517          460 AIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTW----HFRCTIL-PQEDKIPAIVTRLTDFHKNFMDK  530 (533)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~----~iRis~~-~~~e~i~~~~~~l~~~l~~~~~~  530 (533)
                       .+  .+..++..++.....+.++||.+++|..|...++..    +||++++ .+.|+++++++|+..++++....
T Consensus       398 -~~--~~~~i~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~kiffRls~a~a~~e~l~~g~~rf~~~ike~f~~  470 (472)
T KOG0634|consen  398 -FD--TKKSINQIEEIIFIKAVKNGVKLVCGSWFMVDPESSWSKIFFRLSIAFAEPEKLDEGIERFGSVIKEHFIT  470 (472)
T ss_pred             -cc--cccchHHHHHHHHHHHHHCCeEEecCceeEEcCccCCCcceEEEEeecCCHHHHHHHHHHHHHHHHHHhhc
Confidence             11  111233345566678889999999999997553332    9999998 88889999999999999987653

>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]

Probab=100.00  E-value=6.2e-40  Score=301.96  Aligned_cols=385  Identities=16%  Similarity=0.166  Sum_probs=313.1

Q ss_pred             cccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHH
Q 009517           65 VLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADS  144 (533)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v  144 (533)
                      +..++..+..+++...+.+..+        .++..+||++|.++.+..+||                         ...+
T Consensus         6 f~~I~~a~p~~vf~~~~~y~~d--------~~p~KvnL~igAYRtd~g~PW-------------------------vLPv   52 (410)
T KOG1412|consen    6 FANIPVAPPIEVFKLNASYGED--------LDPVKVNLGIGAYRTDDGKPW-------------------------VLPV   52 (410)
T ss_pred             hcCCccCChHHHHhhHHHhccc--------CCcceeecccceEEcCCCCee-------------------------Eehh
Confidence            4556666777777777777642        335689999999999999998                         5668


Q ss_pred             HHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCE-----EEcCChHHHHHHHHHHhccCCCCeEE
Q 009517          145 IERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDI-----FLTDGASPAVHMMMQLLIRSENDGIL  219 (533)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i-----~~t~G~~~al~~~~~~l~~~~gd~Vl  219 (533)
                      ++++...+.++.. .+++|.|..|++.++++.++.+-+.....+..+++     +.++|+...-.-++..++  ...+|+
T Consensus        53 Vk~~e~~i~~d~s-~NHEYLpi~Gl~~F~~~A~el~lg~~s~a~kE~Rv~~vQslsGTGAl~~~A~Fl~~~~--~~~~VY  129 (410)
T KOG1412|consen   53 VKKAEKKIANDQS-LNHEYLPILGLPTFTKAATELLLGADSPAIKEDRVFGVQSLSGTGALRIAADFLATFY--NKNTVY  129 (410)
T ss_pred             hhhhhhhccCchh-ccchhccccCchhhhhhhHHHhcCCCchhhhhccccceeeccccchhhhhHHHHHHhc--ccceeE
Confidence            8888887776655 68999999999999999999997655555666664     445555554455555555  456899


Q ss_pred             EcCCcCcchHHHHHHhC-CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCC--CCCCccCCCHHHHHHHH
Q 009517          220 CPIPQYPLYSASIALHG-GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP--GNPTGQVLAEENQRAIV  296 (533)
Q Consensus       220 v~~p~~~~~~~~~~~~g-~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p--~NPtG~~~s~~~l~~i~  296 (533)
                      +.+|+|.++..+++.+| .++..|++-+.++-.+|++.+...|+.+     +.+.|++.+.  |||||..+++|+|++|+
T Consensus       130 ~SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~~d~e~~Lsdl~~A-----Pe~si~iLhaCAhNPTGmDPT~EQW~qia  204 (410)
T KOG1412|consen  130 VSNPTWENHHAIFEKAGFTTVATYPYWDAENKCVDLEGFLSDLESA-----PEGSIIILHACAHNPTGMDPTREQWKQIA  204 (410)
T ss_pred             ecCCchhHHHHHHHHcCCceeeeeeeecCCCceecHHHHHHHHhhC-----CCCcEEeeeccccCCCCCCCCHHHHHHHH
Confidence            99999999999999999 5677888887777889999999999986     6667766643  99999999999999999


Q ss_pred             HHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHH--
Q 009517          297 DFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVRE--  374 (533)
Q Consensus       297 ~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~--  374 (533)
                      ++.++++++.++|-+|++|.-+  .+..+...+...+   ..+..+++++||+|+| ||+|.|+|.+..+..++..+.  
T Consensus       205 ~vik~k~lf~fFDiAYQGfASG--D~~~DawAiR~fV---~~g~e~fv~QSFaKNf-GlYneRvGnltvv~~n~a~i~~v  278 (410)
T KOG1412|consen  205 DVIKSKNLFPFFDIAYQGFASG--DLDADAWAIRYFV---EQGFELFVCQSFAKNF-GLYNERVGNLTVVVNNPAVIAGV  278 (410)
T ss_pred             HHHHhcCceeeeehhhcccccC--CccccHHHHHHHH---hcCCeEEEEhhhhhhc-ccccccccceEEEecChhHHHHH
Confidence            9999999999999999997653  3444444554555   4556789999999999 999999999888766666554  


Q ss_pred             --HHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CC-ceEecCCcee
Q 009517          375 --QIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL--EG-ITCNKAEGAM  448 (533)
Q Consensus       375 --~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~g-~~~~~~~gg~  448 (533)
                        +|..+.. ..++|+..+..++...|+.|+    ++++|...++.|..+++++|..|++.|..+  || |+++..+.||
T Consensus       279 ~SQl~lviR~~~SNPPAyGArIV~kvL~tP~----lre~W~~sik~MssRI~~MR~aLrd~L~aL~TPGtWDHI~~QiGM  354 (410)
T KOG1412|consen  279 KSQLTLVIRSNWSNPPAYGARIVHKVLSTPE----LREQWIQSIKTMSSRIKKMRTALRDHLVALKTPGTWDHITQQIGM  354 (410)
T ss_pred             HHHHHHHHhhccCCCcchhhHHHHHHhcCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHhhccc
Confidence              4444444 678999999999999999875    889999999999999999999999999998  77 9999999999


Q ss_pred             EEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec-CCcCcHHHHHHHHHHHHHHH
Q 009517          449 YLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~~~~l~~~l~~~  527 (533)
                      |.+.++..                 ..++.+.+.+.|++.       ..|    ||+++ ++..++++.+++|.+.++.+
T Consensus       355 FSyTGLtp-----------------~qV~~li~~h~vyLl-------~~G----RInisGLN~~NveyVAkAIde~Vr~~  406 (410)
T KOG1412|consen  355 FSYTGLTP-----------------AQVDHLIENHKVYLL-------SDG----RINISGLNMKNVEYVAKAIDETVRAI  406 (410)
T ss_pred             eeecCCCH-----------------HHHHHHHHhceEEEe-------cCC----cEeeeccccccHHHHHHHHHHHHHhh
Confidence            99987651                 125677888999998       466    99996 99999999999999999876


Q ss_pred             H
Q 009517          528 M  528 (533)
Q Consensus       528 ~  528 (533)
                      .
T Consensus       407 ~  407 (410)
T KOG1412|consen  407 K  407 (410)
T ss_pred             c
Confidence            4

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=100.00  E-value=6.4e-40  Score=332.79  Aligned_cols=326  Identities=20%  Similarity=0.326  Sum_probs=262.4

Q ss_pred             ceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHH
Q 009517           98 EILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA  177 (533)
Q Consensus        98 ~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia  177 (533)
                      ++|||++|++..                      +.       |+.+++++.++...     ...|++..| .+||+++|
T Consensus        20 ~~i~l~~~~~~~----------------------~~-------~~~~~~a~~~~~~~-----~~~y~~~~~-~~lr~~ia   64 (346)
T TIGR01141        20 EVIKLNSNENPF----------------------GP-------PPKAKEALRAEADK-----LHRYPDPDP-AELKQALA   64 (346)
T ss_pred             ceEEccCCCCCC----------------------CC-------CHHHHHHHHHhHHH-----hhcCCCCCH-HHHHHHHH
Confidence            499999999764                      22       78899998887643     457888776 89999999


Q ss_pred             HHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHH
Q 009517          178 AGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEV  257 (533)
Q Consensus       178 ~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l  257 (533)
                      ++++      +++++|++|+|+++++..++..+. ++||+|++++|+|+.|...+...|.+++.++++.+  +.+|++.+
T Consensus        65 ~~~~------~~~~~i~~~~G~~~~l~~~~~~l~-~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~~~--~~~d~~~l  135 (346)
T TIGR01141        65 DYYG------VDPEQILLGNGSDEIIELLIRAFL-EPGDAVLVPPPTYSMYEISAKIHGAEVVKVPLDED--GQLDLEDI  135 (346)
T ss_pred             HHhC------cChHHEEEcCCHHHHHHHHHHHhc-CCCCEEEEcCCCHHHHHHHHHHcCCeEEEeccCCC--CCCCHHHH
Confidence            9985      668899999999999999999988 79999999999999999899999999999998754  57999999


Q ss_pred             HHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCC
Q 009517          258 KKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE  337 (533)
Q Consensus       258 ~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~  337 (533)
                      ++.+.+      ++++|++++|+||||.+++.+++++|++.|+ +++++|+||+|..+.+.+  ...   .....    .
T Consensus       136 ~~~~~~------~~~~v~l~~p~NptG~~~~~~~~~~l~~~~~-~~~~ii~D~~y~~~~~~~--~~~---~~~~~----~  199 (346)
T TIGR01141       136 LVAIDD------KPKLVFLCSPNNPTGNLLSRSDIEAVLERTP-EDALVVVDEAYGEFSGEP--STL---PLLAE----Y  199 (346)
T ss_pred             HHhcCC------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCcEEEEECchhhhcCCc--cHH---HHHhh----C
Confidence            998754      7899999999999999999999999888887 799999999999865432  111   22111    1


Q ss_pred             CCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHH
Q 009517          338 KDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDG  417 (533)
Q Consensus       338 ~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~  417 (533)
                      +  ++|++.||||.+ |++|+|+||+++   ++++++++..... .++.++++|.++..+++..           .+.++
T Consensus       200 ~--~~i~~~S~sK~~-g~~G~r~G~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~-----------~~~~~  261 (346)
T TIGR01141       200 P--NLIVLRTLSKAF-GLAGLRIGYAIA---NAEIIDALNKVRA-PFNLSRLAQAAAIAALRDD-----------DFIEK  261 (346)
T ss_pred             C--CEEEEehhhHhh-hchhhhceeeec---CHHHHHHHHhccC-CCCCCHHHHHHHHHHhCCH-----------HHHHH
Confidence            2  478999999998 789999999998   8999998877653 4677889999988888631           24567


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCC
Q 009517          418 ILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVP  497 (533)
Q Consensus       418 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~  497 (533)
                      ++++++++++.+++.|.+++|+++. +.+++|+|++++.              +...++. .|.++||.+.||..|+.. 
T Consensus       262 ~~~~~~~~~~~l~~~L~~~~g~~~~-~~~g~~~~~~~~~--------------~~~~~~~-~L~~~gI~v~~g~~f~~~-  324 (346)
T TIGR01141       262 TVEEINAERERLYDGLKKLPGLEVY-PSDANFVLIRFPR--------------DADALFE-ALLEKGIIVRDLNSYPGL-  324 (346)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCEEC-CCcCCEEEEecCC--------------CHHHHHH-HHHHCCeEEEeCCCcCCC-
Confidence            7888899999999999988888855 4567788866541              2344444 455689999999998633 


Q ss_pred             CCceEEEEecCCcCcHHHHHHHH
Q 009517          498 GTWHFRCTILPQEDKIPAIVTRL  520 (533)
Q Consensus       498 g~~~iRis~~~~~e~i~~~~~~l  520 (533)
                       .+++|||++ ++++++++++.|
T Consensus       325 -~~~iRls~~-~~~~i~~~~~~l  345 (346)
T TIGR01141       325 -PNCLRITVG-TREENDRFLAAL  345 (346)
T ss_pred             -CCeEEEecC-CHHHHHHHHHHh
Confidence             459999988 567788888766

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=2.5e-40  Score=335.54  Aligned_cols=299  Identities=20%  Similarity=0.312  Sum_probs=239.0

Q ss_pred             ccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCC-CeEEEcCCcCcchHHHHHHhCCe
Q 009517          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-DGILCPIPQYPLYSASIALHGGT  238 (533)
Q Consensus       160 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vlv~~p~~~~~~~~~~~~g~~  238 (533)
                      ...|++.. ..+|+++++++++      +++++|++|+|+++++..+++.++ ++| |+|+++.|+|..|...++..|++
T Consensus        51 ~~~Yp~~~-~~~l~~~~a~~~g------~~~~~I~~~~Gs~e~i~~~~~~~~-~~g~~~vli~~P~y~~y~~~~~~~G~~  122 (351)
T PRK01688         51 LNRYPECQ-PKAVIENYAAYAG------VKPEQVLVSRGADEGIELLIRAFC-EPGKDAILYCPPTYGMYSVSAETIGVE  122 (351)
T ss_pred             cccCCCCC-hHHHHHHHHHHhC------CCHHHEEEcCCHHHHHHHHHHHhc-CCCCCEEEEcCCCHHHHHHHHHHcCCE
Confidence            45688776 5789999998874      789999999999999999999998 787 89999999999999999999999


Q ss_pred             EEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEcccccccccc
Q 009517          239 LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYV  318 (533)
Q Consensus       239 ~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~  318 (533)
                      ++.+++++  +|++|++.+++++ +      ++++|+++|||||||.+++.+++++|++.|++ +.+||+||+|.+|.. 
T Consensus       123 ~~~v~~~~--~~~~d~~~l~~~~-~------~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~-~~~vivDEay~~f~~-  191 (351)
T PRK01688        123 IRTVPTLD--NWQLDLPAIADNL-D------GVKVVYVCSPNNPTGNLINPQDLRTLLELTRG-KAIVVADEAYIEFCP-  191 (351)
T ss_pred             EEEeecCC--CCCCCHHHHHHhc-c------CCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCC-CcEEEEECchhhcCC-
Confidence            99999864  5899999999887 3      68999999999999999999999999999976 688999999998652 


Q ss_pred             CCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhccccCChHHHHHHHHHc
Q 009517          319 PEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVM  398 (533)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~~L  398 (533)
                       .   .+...+...      ..++|+++||||+| |++|+|+||+++   ++++++.+.+... .++.+.++|.++..+|
T Consensus       192 -~---~s~~~~~~~------~~n~iv~rSfSK~~-glaGlRiGy~i~---~~~~i~~l~~~~~-~~~v~~~~~~~a~~~L  256 (351)
T PRK01688        192 -Q---ASLAGWLAE------YPHLVILRTLSKAF-ALAGLRCGFTLA---NEEVINLLLKVIA-PYPLSTPVADIAAQAL  256 (351)
T ss_pred             -C---CChHHHHhh------CCCEEEEecchHhh-cCHHHHHhHHhC---CHHHHHHHHhccC-CCCCCHHHHHHHHHHH
Confidence             2   122233322      23589999999999 899999999998   9999998887653 4667788888888888


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHH
Q 009517          399 SPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRR  478 (533)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (533)
                      .+..         .+++++.++.++++|+++.+.|++++++..+.|.+++|+|+++.               +...+...
T Consensus       257 ~~~~---------~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~ps~~nfi~~~~~---------------~~~~l~~~  312 (351)
T PRK01688        257 SPQG---------IAAMRERVAEINANRQWLIAALKEIPCVEQVFDSETNYILARFT---------------ASSAVFKS  312 (351)
T ss_pred             hcch---------HHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcC---------------CHHHHHHH
Confidence            5321         23455667778888999999999887776566777889997653               12344444


Q ss_pred             HHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHH
Q 009517          479 LLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRL  520 (533)
Q Consensus       479 ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l  520 (533)
                       |.++||.++++..|...  .+++|||++. .++++.++++|
T Consensus       313 -L~~~gi~vr~~~~~~~~--~~~iRis~~~-~~e~~~l~~al  350 (351)
T PRK01688        313 -LWDQGIILRDQNKQPGL--SNCLRITIGT-REECQRVIDAL  350 (351)
T ss_pred             -HHHCCeEEEECCCcCCC--CCeEEEeCCC-HHHHHHHHHhh
Confidence             45789999987655312  3499999984 46678887776

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=100.00  E-value=1.9e-39  Score=331.33  Aligned_cols=324  Identities=18%  Similarity=0.285  Sum_probs=253.1

Q ss_pred             eeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHH
Q 009517           99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA  178 (533)
Q Consensus        99 ~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~  178 (533)
                      +|+|++|++.+                      +.       ++.+++++.+.+..     ...|++..+ .+||+++|+
T Consensus        36 ~i~l~~~~~~~----------------------~~-------~~~~~~~~~~~~~~-----~~~y~~~~~-~~lr~~ia~   80 (361)
T PRK00950         36 IIKLGSNENPL----------------------GP-------SPKAVEAIEKELSK-----IHRYPEPDA-PELREALSK   80 (361)
T ss_pred             eEEccCCCCCC----------------------CC-------CHHHHHHHHHHHHh-----hcCCCCCCH-HHHHHHHHH
Confidence            99999998664                      21       67788888776654     456887664 899999999


Q ss_pred             HHHhhcCCCCCCCCEEE-cCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHH
Q 009517          179 GIEARDGFPADPNDIFL-TDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEV  257 (533)
Q Consensus       179 ~~~~~~g~~~~~~~i~~-t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l  257 (533)
                      +++      +++++|++ |+|+++++..+++.++ ++||+|++++|+|..|...++..|++++.++.+  ++|++|++.+
T Consensus        81 ~~~------~~~~~i~~~~~Ga~~~i~~~~~~~~-~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~l  151 (361)
T PRK00950         81 YTG------VPVENIIVGGDGMDEVIDTLMRTFI-DPGDEVIIPTPTFSYYEISAKAHGAKPVYAKRE--EDFSLDVDSV  151 (361)
T ss_pred             HhC------CCHHHEEEeCCCHHHHHHHHHHHhc-CCCCEEEEcCCChHHHHHHHHHcCCEEEEeecC--CCCCcCHHHH
Confidence            974      67889999 7899999999999987 799999999999999999999999999999854  4678999999


Q ss_pred             HHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCC
Q 009517          258 KKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE  337 (533)
Q Consensus       258 ~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~  337 (533)
                      ++.+++      +++++++++|+||||.+++.++   |.++|+++|+++|+||+|.+|.  +. ...   .+...     
T Consensus       152 ~~~~~~------~~~~v~~~~p~nptG~~~~~~~---l~~l~~~~~~~li~De~y~~~~--~~-~~~---~~~~~-----  211 (361)
T PRK00950        152 LNAITE------KTKVIFLCTPNNPTGNLIPEED---IRKILESTDALVFVDEAYVEFA--EY-DYT---PLALE-----  211 (361)
T ss_pred             HHHhcc------CCCEEEEeCCCCCCCCCcCHHH---HHHHHHHCCcEEEEECchhhhC--cc-chH---HHHHh-----
Confidence            998865      7899999999999999999655   5556678899999999999864  21 111   22221     


Q ss_pred             CCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHH
Q 009517          338 KDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDG  417 (533)
Q Consensus       338 ~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~  417 (533)
                       ..++++++||||.+ |++|+|+||+++   ++++++.+.+... .++.+.++|.++..++.+.           +++++
T Consensus       212 -~~~vi~~~S~SK~~-g~~GlRiG~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~a~~~l~~~-----------~~~~~  274 (361)
T PRK00950        212 -YDNLIIGRTFSKVF-GLAGLRIGYGFV---PEWLIDYYMRAKT-PFSLTRLSQAAAIAALSDK-----------EYIEK  274 (361)
T ss_pred             -cCCEEEEEeehHhh-cCchhhcchhcC---CHHHHHHHHHhcC-CCCCCHHHHHHHHHHhcCH-----------HHHHH
Confidence             22579999999999 899999999998   9999988877654 3557888998888888531           33456


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCC
Q 009517          418 ILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVP  497 (533)
Q Consensus       418 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~  497 (533)
                      +++.++++++.+.+.|+    +.+ .+.+++|+|++++  .           .+...++..++ ++||.+.||..|+ ..
T Consensus       275 ~~~~~~~~r~~l~~~l~----~~~-~~~~~~~i~~~~~--~-----------~~~~~~~~~l~-~~gv~v~~~~~f~-~~  334 (361)
T PRK00950        275 SIEHGIKSREYLYNELP----FKV-YPSEANFVLVDVT--P-----------MTAKEFCEELL-KRGVIVRDCTSFR-GL  334 (361)
T ss_pred             HHHHHHHHHHHHHhhcC----eeE-CCCcceEEEEECC--C-----------CCHHHHHHHHH-HCCEEEeeCCccC-CC
Confidence            66778888888887775    444 4567789997663  1           12455555554 5799999999886 34


Q ss_pred             CCceEEEEecCCcCcHHHHHHHHHHHH
Q 009517          498 GTWHFRCTILPQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       498 g~~~iRis~~~~~e~i~~~~~~l~~~l  524 (533)
                      +.++||||++ +.+++++++++|++++
T Consensus       335 ~~~~lRis~~-~~~~~~~l~~~L~~il  360 (361)
T PRK00950        335 GDYYIRVSIG-TFEENERFLEILKEIV  360 (361)
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHHHh
Confidence            4569999998 4567899999998865

>PRK03321 putative aminotransferase; Provisional

Probab=100.00  E-value=5.7e-39  Score=326.51  Aligned_cols=327  Identities=19%  Similarity=0.249  Sum_probs=254.2

Q ss_pred             eeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHH
Q 009517           99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA  178 (533)
Q Consensus        99 ~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~  178 (533)
                      +|+|+.|.|..                      +.       |+.+.+++.+.+..     ...|+ ..|..+||+++|+
T Consensus        24 ~i~l~~~~~~~----------------------~~-------~~~~~~a~~~~~~~-----~~~y~-~~g~~~lr~~ia~   68 (352)
T PRK03321         24 AIKLSSNETPF----------------------GP-------LPSVRAAIARAAAG-----VNRYP-DMGAVELRAALAE   68 (352)
T ss_pred             ceeccCCCCCC----------------------CC-------CHHHHHHHHHHHHh-----cCcCC-CCcHHHHHHHHHH
Confidence            89999998874                      21       57788887776653     45675 4689999999999


Q ss_pred             HHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHH
Q 009517          179 GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVK  258 (533)
Q Consensus       179 ~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~  258 (533)
                      +++      +++++|++|+|+++++..++..++ ++||+|+++.|+|..|...++..|.+++.+++++  ++++|++.++
T Consensus        69 ~~~------~~~~~I~~~~G~~~~l~~~~~~~~-~~gd~Vli~~p~y~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~  139 (352)
T PRK03321         69 HLG------VPPEHVAVGCGSVALCQQLVQATA-GPGDEVIFAWRSFEAYPILVQVAGATPVQVPLTP--DHTHDLDAMA  139 (352)
T ss_pred             HhC------cCHHHEEECCCHHHHHHHHHHHhc-CCCCEEEeCCCCHHHHHHHHHHcCCEEEEccCCC--CCCCCHHHHH
Confidence            985      678899999999999999999888 7999999999999999989999999999999874  3588999999


Q ss_pred             HHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCC
Q 009517          259 KQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEK  338 (533)
Q Consensus       259 ~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (533)
                      +++++      ++++|++++||||||.+++.+++.++++.+ +++++||+||+|.++.+++. ...++..+       +.
T Consensus       140 ~~~~~------~~~~v~l~~p~NPtG~~~~~~~l~~l~~~~-~~~~~ii~De~y~~~~~~~~-~~~~~~~~-------~~  204 (352)
T PRK03321        140 AAITD------RTRLIFVCNPNNPTGTVVTPAELARFLDAV-PADVLVVLDEAYVEYVRDDD-VPDGLELV-------RD  204 (352)
T ss_pred             Hhhcc------CCCEEEEeCCCCCcCCCcCHHHHHHHHHhC-CCCeEEEEechHHHhccCcC-CCcHHHHH-------hh
Confidence            99876      789999999999999999988888877765 47999999999999888553 21222221       22


Q ss_pred             CceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHH
Q 009517          339 DISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGI  418 (533)
Q Consensus       339 ~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~  418 (533)
                      ..++|+++||||.| |+||+|+||+++   ++++++.+.+.. ..++.+.++|.++.++|...       +.+    .+.
T Consensus       205 ~~~vi~~~S~SK~~-g~~GlRiG~~v~---~~~~~~~~~~~~-~~~~~s~~~q~~a~~~l~~~-------~~~----~~~  268 (352)
T PRK03321        205 HPNVVVLRTFSKAY-GLAGLRVGYAVG---HPEVIAALRKVA-VPFSVNSLAQAAAIASLAAE-------DEL----LER  268 (352)
T ss_pred             CCCEEEEecchHHh-hhHHHhhhhhcC---CHHHHHHHHHhc-CCCCCCHHHHHHHHHHhcCH-------HHH----HHH
Confidence            34689999999999 899999999998   899999988764 45788999999888887521       122    223


Q ss_pred             HHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCC
Q 009517          419 LSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPG  498 (533)
Q Consensus       419 ~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g  498 (533)
                      .+.+.++++.+.+.|++. |+.+.+ .+|+|+|+++..              +...++.. |+++||.+.|   |+ .  
T Consensus       269 ~~~~~~~r~~~~~~L~~~-~~~~~~-~~g~~i~i~l~~--------------~~~~~~~~-l~~~gI~v~~---~~-~--  325 (352)
T PRK03321        269 VDAVVAERDRVRAALRAA-GWTVPP-SQANFVWLPLGE--------------RTADFAAA-AAEAGVVVRP---FA-G--  325 (352)
T ss_pred             HHHHHHHHHHHHHHHHHC-CCccCC-CCCCEEEEeCCC--------------CHHHHHHH-HHHCCEEEEc---cC-C--
Confidence            334445567788999887 776544 457889976531              13444444 5779999997   43 2  


Q ss_pred             CceEEEEecCCcCcHHHHHHHHHHHHH
Q 009517          499 TWHFRCTILPQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       499 ~~~iRis~~~~~e~i~~~~~~l~~~l~  525 (533)
                       .+|||+++. .++.++++++|++++.
T Consensus       326 -~~iRi~~~~-~~~~~~~~~al~~~~~  350 (352)
T PRK03321        326 -EGVRVTIGA-PEENDAFLRAARAWRA  350 (352)
T ss_pred             -CcEEEeeCC-HHHHHHHHHHHHHHhc
Confidence             269999964 4567999999988754

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=2e-38  Score=319.15  Aligned_cols=314  Identities=18%  Similarity=0.261  Sum_probs=240.9

Q ss_pred             ceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHH
Q 009517           98 EILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA  177 (533)
Q Consensus        98 ~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia  177 (533)
                      ++|+|++|++++                      ++       |+.+++++.+.+...   ....|++. |.++||+++|
T Consensus        20 ~~i~l~~~~~~~----------------------~~-------p~~~~~~~~~~~~~~---~~~~Y~~~-~~~~Lr~aia   66 (335)
T PRK14808         20 DRTYLALNENPF----------------------PF-------PEDLVDEVFRRLNSD---TLRIYYDS-PDEELIEKIL   66 (335)
T ss_pred             ceeEecCCCCCC----------------------CC-------CHHHHHHHHHHhhhh---hhhcCCCC-ChHHHHHHHH
Confidence            389999999875                      33       788888888776541   13447665 7999999999


Q ss_pred             HHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHH
Q 009517          178 AGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEV  257 (533)
Q Consensus       178 ~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l  257 (533)
                      +++++. +  +++++|++|+|+++++..+++.+     |.|++++|+|+.|..+++.+|++++.+|++++  +.++... 
T Consensus        67 ~~~~~~-~--~~~~~i~it~Ga~~~i~~~~~~~-----d~v~v~~P~y~~~~~~~~~~g~~~~~v~~~~~--~~~~~~~-  135 (335)
T PRK14808         67 SYLDTD-F--LSKNNVSVGNGADEIIYVMMLMF-----DRSVFFPPTYSCYRIFAKAVGAKFLEVPLTKD--LRIPEVN-  135 (335)
T ss_pred             HHhCCC-C--CCcceEEEcCCHHHHHHHHHHHh-----CcEEECCCCHHHHHHHHHHcCCeEEEecCCCc--CCCChhH-
Confidence            999764 3  67899999999999999999876     46999999999999999999999999998753  4444322 


Q ss_pred             HHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCC
Q 009517          258 KKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE  337 (533)
Q Consensus       258 ~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~  337 (533)
                         + .      ++++++++|||||||.++|.+++++|+    +++++||+||+|.+|.  +. ...   .....     
T Consensus       136 ---~-~------~~~~i~i~nP~NPTG~~~s~~~l~~l~----~~~~~ii~DE~Y~~f~--~~-~~~---~~~~~-----  190 (335)
T PRK14808        136 ---V-G------EGDVVFIPNPNNPTGHVFEREEIERIL----KTGAFVALDEAYYEFH--GE-SYV---DLLKK-----  190 (335)
T ss_pred             ---c-c------CCCEEEEeCCCCCCCCCcCHHHHHHHH----hcCCEEEEECchhhhc--CC-chH---HHHHh-----
Confidence               2 1      468999999999999999988888876    4799999999999963  32 121   22222     


Q ss_pred             CCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHH
Q 009517          338 KDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDG  417 (533)
Q Consensus       338 ~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~  417 (533)
                       ..++|+++||||++ |++|+|+||+++   ++++++.+.+.. ..++.+.++|.++..++++.           ++..+
T Consensus       191 -~~~vi~~~S~SK~~-~l~GlRvG~~v~---~~~~~~~l~~~~-~~~~~~~~~q~a~~~~l~~~-----------~~~~~  253 (335)
T PRK14808        191 -YENLAVIRTFSKAF-SLAAQRIGYVVS---SEKFIDAYNRVR-LPFNVSYVSQMFAKVALDHR-----------EIFEE  253 (335)
T ss_pred             -CCCEEEEEechhhc-cCcccceEEEEe---CHHHHHHHHHhc-CCCCCCHHHHHHHHHHHhCH-----------HHHHH
Confidence             12689999999999 899999999998   999999987765 34778889999998888521           23345


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCC
Q 009517          418 ILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVP  497 (533)
Q Consensus       418 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~  497 (533)
                      ..+.++++++.+.+.|+++ |+.+.+++|+ |+|+.++..             +... +.+.|.++||.|+.   |.   
T Consensus       254 ~~~~~~~~r~~l~~~L~~~-g~~~~~~~g~-f~~~~l~~~-------------~~~~-~~~~l~~~Gi~V~~---~~---  311 (335)
T PRK14808        254 RTKFIVEERERMKSALREM-GYRITDSRGN-FVFIFMEKE-------------EKER-LLEHLRAKNIAVRS---FR---  311 (335)
T ss_pred             HHHHHHHHHHHHHHHHHHC-CCEECCCCCe-EEEEeCCCc-------------cHHH-HHHHHHHCCeEEEE---CC---
Confidence            5567777788999999998 8888888766 568655411             1233 34566778999995   32   


Q ss_pred             CCceEEEEecCCcCcHHHHHHHHHH
Q 009517          498 GTWHFRCTILPQEDKIPAIVTRLTD  522 (533)
Q Consensus       498 g~~~iRis~~~~~e~i~~~~~~l~~  522 (533)
                        .++||+++.. ++.+++++.|++
T Consensus       312 --~~~Risi~~~-~~~~~~~~~l~~  333 (335)
T PRK14808        312 --EGVRITIGKR-EENDMILKELEV  333 (335)
T ss_pred             --CCeEEecCCH-HHHHHHHHHHHh
Confidence              2799999864 445778877764

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=100.00  E-value=1.7e-38  Score=319.43  Aligned_cols=289  Identities=20%  Similarity=0.276  Sum_probs=232.0

Q ss_pred             ccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeE
Q 009517          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTL  239 (533)
Q Consensus       160 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~  239 (533)
                      ...|++..| ++||++++++++      +++++|++|+|+++++..+.+.+  .+| .|++++|+|..|...++..|.++
T Consensus        41 ~~~y~~~~~-~~lr~~la~~~~------~~~~~i~~t~G~~~~i~~~~~~l--~~g-~vl~~~p~y~~~~~~~~~~g~~~  110 (330)
T TIGR01140        41 WARYPDPEY-DELRAAAAAYYG------LPAASVLPVNGAQEAIYLLPRLL--APG-RVLVLAPTYSEYARAWRAAGHEV  110 (330)
T ss_pred             HhhCCCccH-HHHHHHHHHHhC------CChhhEEECCCHHHHHHHHHHHh--CCC-eEEEeCCCcHHHHHHHHHcCCEE
Confidence            567888775 999999999974      56899999999999999987764  577 79999999999999999999999


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccC
Q 009517          240 VPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVP  319 (533)
Q Consensus       240 ~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~  319 (533)
                      +.++         |++.+++.++       ++++|++++||||||.+++.+++++|+++|+++|++||+||+|.++.+..
T Consensus       111 ~~~~---------d~~~l~~~~~-------~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~  174 (330)
T TIGR01140       111 VELP---------DLDRLPAALE-------ELDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPDA  174 (330)
T ss_pred             EEeC---------CHHHHHhhcc-------cCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCcc
Confidence            8886         6889988873       47789999999999999999999999999999999999999999876531


Q ss_pred             CCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhccccCChHHHHHHHHHcC
Q 009517          320 EKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMS  399 (533)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~~L~  399 (533)
                           ++..+.      +...++|+++||||++ |++|+|+||+++   ++++++.+..... .++.+.++|.++..+++
T Consensus       175 -----~~~~~~------~~~~~~i~~~S~SK~~-g~~G~R~G~i~~---~~~~~~~l~~~~~-~~~~s~~~q~~~~~~l~  238 (330)
T TIGR01140       175 -----SLAPQA------ARFPGLVVLRSLTKFF-GLAGLRLGFVVA---HPALLARLREALG-PWTVNGPARAAGRAALA  238 (330)
T ss_pred             -----chhhHh------ccCCCEEEEEecchhh-cCchhhhhheeC---CHHHHHHHHhcCC-CCCchHHHHHHHHHHHh
Confidence                 222221      1234689999999999 899999999998   8899988887653 46678889999999986


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHH
Q 009517          400 PPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRL  479 (533)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  479 (533)
                      +.           .+.+.++++++++++.+.+.|++++.+.+. +.+++|+|++++               +..++++++
T Consensus       239 ~~-----------~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~f~~~~~~---------------~~~~l~~~l  291 (330)
T TIGR01140       239 DT-----------AWQAATRARLAAERARLAALLARLGGLEVV-GGTALFLLVRTP---------------DAAALHEAL  291 (330)
T ss_pred             ch-----------HHHHHHHHHHHHHHHHHHHHHHhCCCceEC-CCCCeEEEEEcC---------------CHHHHHHHH
Confidence            42           223456788999999999999998446654 557899997644               134455555


Q ss_pred             HHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHH
Q 009517          480 LNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRL  520 (533)
Q Consensus       480 l~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l  520 (533)
                      + ++||.+.||..|+. .+.++|||+++...++ ++++++|
T Consensus       292 ~-~~gi~v~pg~~f~~-~~~~~iRi~~~~~~~~-~~~~~~l  329 (330)
T TIGR01140       292 A-RRGILIRDFDNFPG-LDPRYLRFALPTDEEN-DRLEEAL  329 (330)
T ss_pred             H-HCCEEEEECCCCCC-CCCCEEEEEecCHHHH-HHHHHhh
Confidence            5 57999999999952 3345999999865554 6666655

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=2e-38  Score=322.29  Aligned_cols=297  Identities=19%  Similarity=0.277  Sum_probs=234.1

Q ss_pred             ccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCC-CeEEEcCCcCcchHHHHHHhCCe
Q 009517          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-DGILCPIPQYPLYSASIALHGGT  238 (533)
Q Consensus       160 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vlv~~p~~~~~~~~~~~~g~~  238 (533)
                      ...|++.. ..+||+++|++++      +++++|++|+|+++++..+++.++ ++| |+|+++.|+|..|...++..|++
T Consensus        54 ~~~Yp~~~-~~~Lr~aia~~~~------~~~~~I~it~Gs~~~i~~~~~~~~-~~g~d~vlv~~P~y~~y~~~~~~~g~~  125 (354)
T PRK04635         54 LNRYPECQ-PPELINAYSAYAG------VAPEQILTSRGADEAIELLIRAFC-EPGQDSIACFGPTYGMYAISAETFNVG  125 (354)
T ss_pred             hccCCCCC-HHHHHHHHHHHhC------cCHHHEEEeCCHHHHHHHHHHHhc-CCCCCeEEEcCCChHHHHHHHHHcCCE
Confidence            45698874 8999999999874      789999999999999999999998 788 99999999999999999999999


Q ss_pred             EEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEcccccccccc
Q 009517          239 LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYV  318 (533)
Q Consensus       239 ~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~  318 (533)
                      ++.+|+++  +|++|++.++. + +      ++++|+++|||||||.+++.+++++|++.|+  +++||+||+|.+|...
T Consensus       126 v~~v~~~~--~~~~~~~~l~~-~-~------~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~--~~~vivDeay~~~~~~  193 (354)
T PRK04635        126 VKALPLTA--DYQLPLDYIEQ-L-D------GAKLVFICNPNNPTGTVIDRADIEQLIEMTP--DAIVVVDEAYIEFCPE  193 (354)
T ss_pred             EEEEecCC--CCCCCHHHHHh-c-c------CCCEEEEeCCCCCCCccCCHHHHHHHHHhCC--CcEEEEeCchHhhccC
Confidence            99999864  57899998873 3 3      7899999999999999999999999998876  4999999999986531


Q ss_pred             CCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhccccCChHHHHHHHHHc
Q 009517          319 PEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVM  398 (533)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~~L  398 (533)
                           .+...+...      ..++|+++||||.+ |++|+|+||+++   ++++++.+.+... .++.+...|.++..+|
T Consensus       194 -----~s~~~~~~~------~~~~iv~~S~SK~~-~l~GlRlG~~i~---~~~~~~~l~~~~~-~~~~~~~~~~~a~~~l  257 (354)
T PRK04635        194 -----YSVADLLAS------YPNLVVLRTLSKAF-ALAGARCGFTLA---NEELIEILMRVIA-PYPVPLPVSEIATQAL  257 (354)
T ss_pred             -----cchHHHHhh------CCCEEEEechHHHh-hhhHHHHhhhhC---CHHHHHHHHhhcC-CCCCCHHHHHHHHHHH
Confidence                 122233221      23579999999998 899999999998   9999988876543 4667778888888887


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHH
Q 009517          399 SPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRR  478 (533)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (533)
                      .+..         .+++++.++.++++++.+.+.|++++++.+.+++| .|+|++++  .             ...+ .+
T Consensus       258 ~~~~---------~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~g-~f~~~~~~--~-------------~~~~-~~  311 (354)
T PRK04635        258 SEAG---------LARMKFQVLDLNAQGARLQAALSMYGGAKVLEGNG-NYVLAKFD--D-------------VDAV-FK  311 (354)
T ss_pred             hccc---------HHHHHHHHHHHHHHHHHHHHHHHhCCCceECCCCC-cEEEEECC--C-------------HHHH-HH
Confidence            5421         13345667778999999999999986688777765 57786543  1             2233 35


Q ss_pred             HHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHH
Q 009517          479 LLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTD  522 (533)
Q Consensus       479 ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~  522 (533)
                      +|+++||.++++..++   ..+++|||++. .++++.++++|++
T Consensus       312 ~l~~~gv~v~~~~~~~---~~~~lRis~~~-~e~~~~l~~al~~  351 (354)
T PRK04635        312 ALWDAGIVARAYKDPR---LANCIRFSFSN-RAETDKLIGLIRN  351 (354)
T ss_pred             HHHHCCEEEEECCCCC---CCCeEEEEeCC-HHHHHHHHHHHHH
Confidence            6778999998754332   23499999974 5667877777754

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=100.00  E-value=4.1e-38  Score=317.56  Aligned_cols=301  Identities=20%  Similarity=0.335  Sum_probs=230.8

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      |+.+++++.+.+...   ....|++ .|.++||++++++++      +++++|++|+|+++++..+++.+   +||+|++
T Consensus        33 ~~~~~~~~~~~~~~~---~~~~Y~~-~g~~~lr~~ia~~~~------~~~~~I~~t~G~~~~l~~~~~~~---~gd~V~v   99 (337)
T PRK03967         33 PEELKEEIFEELKRV---PFNRYPH-ITSDPLREAIAEFYG------LDAENIAVGNGSDELISYLVKLF---EGKHIVI   99 (337)
T ss_pred             CHHHHHHHHHHhhcC---ccccCCC-CCHHHHHHHHHHHhC------cCcceEEEcCCHHHHHHHHHHHh---CCCeEEE
Confidence            688888888877542   2467864 689999999999985      77899999999999999888765   6899999


Q ss_pred             cCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHH
Q 009517          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (533)
Q Consensus       221 ~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~  300 (533)
                      +.|+|..|..+++..|.+++.++++.  +|++|++.+++.+ +      +++++++++||||||.+++.+++.+|   + 
T Consensus       100 ~~P~y~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~~-~------~~~~v~~~~P~NPtG~~~~~~~l~~i---~-  166 (337)
T PRK03967        100 TPPTFGMYSFYAKLNGIPVIDVPLKE--DFTIDGERIAEKA-K------NASAVFICSPNNPTGNLQPEEEILKV---L-  166 (337)
T ss_pred             eCCChHHHHHHHHHcCCeEEEeecCC--CCCcCHHHHHHhc-c------CCCEEEEeCCCCCCCCCCCHHHHHHH---H-
Confidence            99999999999999999999999874  5789999998764 2      67899999999999999997666655   4 


Q ss_pred             HcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhh
Q 009517          301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA  380 (533)
Q Consensus       301 ~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~  380 (533)
                      ++++++|+||+|.+|.  +. +..   .+..      ...++|+++||||+| |+||+|+||+++   ++++++.+.+..
T Consensus       167 ~~~~~ii~De~y~~~~--~~-~~~---~~~~------~~~~vi~l~S~SK~~-~l~GlRiG~iv~---~~~~i~~~~~~~  230 (337)
T PRK03967        167 ETGKPVVLDEAYAEFS--GK-SLI---GLID------EYPNLILLRTFSKAF-GLAGIRAGYAIA---NEEIIDALYRIK  230 (337)
T ss_pred             hcCCEEEEECchhhhc--cc-chH---HHHh------hCCCEEEEecchHhh-cchhhhheeeec---CHHHHHHHHhhc
Confidence            4799999999999864  21 111   2211      223589999999999 899999999998   999999988776


Q ss_pred             hccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHH
Q 009517          381 SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKA  460 (533)
Q Consensus       381 ~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~  460 (533)
                      . .++.+.++|.++..+|++.           ++..+.++.+.++++.+.+.|.+.     ..|.+++|+|++++     
T Consensus       231 ~-~~~~~~~~q~~~~~~l~~~-----------~~~~~~~~~~~~~r~~l~~~L~~~-----~~~~~~~~~~~~~~-----  288 (337)
T PRK03967        231 P-PFSLNILTMKIVRLALDHY-----------DLIEERIDYIIKERERVRRELGEY-----AYPSDANFLLLKLD-----  288 (337)
T ss_pred             C-CCCCCHHHHHHHHHHHhCH-----------HHHHHHHHHHHHHHHHHHHHhccC-----cCCCCCcEEEEhHH-----
Confidence            4 3677899999999998631           123334445566677888888764     34688999996542     


Q ss_pred             HHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHH
Q 009517          461 IKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~  525 (533)
                                    +. +.|.++||.++++...    ..+++||+++.. ++.++++++|.++.+
T Consensus       289 --------------~~-~~l~~~gi~v~~~~~~----~~~~~Ri~~~~~-~~~~~l~~~l~~~~~  333 (337)
T PRK03967        289 --------------AY-DYLLENGIVVRKLSGR----LEGHIRVTVGKR-EENDEFIKALKEIKE  333 (337)
T ss_pred             --------------HH-HHHHHCCEEEEeCCCC----CCCeEEEecCCH-HHHHHHHHHHHHHHH
Confidence                          12 3445679999986532    234999999853 334677777766544

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=100.00  E-value=4e-38  Score=317.31  Aligned_cols=287  Identities=18%  Similarity=0.241  Sum_probs=226.0

Q ss_pred             cccCCCcccHHHHHHHHHHHHhhcCCCCC-CCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeE
Q 009517          161 GAYSHSQGIKGLRDTIAAGIEARDGFPAD-PNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTL  239 (533)
Q Consensus       161 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~-~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~  239 (533)
                      ..|++..  .+||+++|++++      +. +++|++|+|+++++..+.. ++ ++|+ |++++|+|+.|...++.+|+++
T Consensus        49 ~~Yp~~~--~~L~~~ia~~~~------~~~~~~I~i~~Gs~e~i~~l~~-~~-~~g~-v~v~~P~y~~y~~~~~~~g~~~  117 (339)
T PRK06959         49 RRLPEDD--DGLAACAARYYG------APDAAHVLPVAGSQAAIRALPA-LL-PRGR-VGIAPLAYSEYAPAFARHGHRV  117 (339)
T ss_pred             HhCCCch--HHHHHHHHHHhC------CCCcccEEECcCHHHHHHHHHH-hc-CCCe-EEEcCCCcHHHHHHHHHCCCEE
Confidence            4588653  899999999975      43 5899999999999997765 45 6776 8999999999999999999999


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccC
Q 009517          240 VPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVP  319 (533)
Q Consensus       240 ~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~  319 (533)
                      +.++.+.        +.    +.+      .+++++++|||||||.+++.+++++|++.|++++.++|+||+|.+|.+. 
T Consensus       118 ~~v~~~~--------~~----~~~------~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~-  178 (339)
T PRK06959        118 VPLDEAA--------DT----LPA------ALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPA-  178 (339)
T ss_pred             Eeecccc--------hh----ccc------cCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCc-
Confidence            9887642        11    222      4678999999999999999999999999999999999999999996542 


Q ss_pred             CCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhccccCChHHHHHHHHHcC
Q 009517          320 EKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMS  399 (533)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~~L~  399 (533)
                          .++..+.       ...++|+++||||.| |++|+|+||+++   ++++++.+.+... .++.+.++|.++.++|+
T Consensus       179 ----~s~~~~~-------~~~~vi~l~SfSK~~-gl~GlRiGy~v~---~~~li~~l~~~~~-~~~vs~~~q~a~~~~L~  242 (339)
T PRK06959        179 ----ASLAAHT-------DRPGLVVLRSVGKFF-GLAGVRAGFVLA---APALLAALRDALG-AWTVSGPARHAVRAAFA  242 (339)
T ss_pred             ----ccchhcc-------CCCCEEEEecChhhc-CCcchheEEEec---CHHHHHHHHHhcC-CCCCcHHHHHHHHHHhC
Confidence                2222221       123489999999999 899999999998   9999999988764 46678999999999996


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHH
Q 009517          400 PPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRL  479 (533)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  479 (533)
                      +.           ++.+++++.++++++.+.+.|+++ |+.+.  .+++|+|++++               +...+. ..
T Consensus       243 ~~-----------~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~--~~~~f~~~~~~---------------~~~~l~-~~  292 (339)
T PRK06959        243 DA-----------AWQAAMRERLAADGARLAALLRAH-GFAVH--ATPLFSWTDDP---------------RAAALH-AA  292 (339)
T ss_pred             cH-----------HHHHHHHHHHHHHHHHHHHHHHHC-CCCcc--CcceEEEEeCC---------------CHHHHH-HH
Confidence            42           234567788999999999999998 87665  35789997643               122333 45


Q ss_pred             HHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHHHHHH
Q 009517          480 LNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       480 l~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~~~  529 (533)
                      |.++||.+++   |+ ..  +++||+++.+.+++++++++|+++++.+..
T Consensus       293 l~~~GI~vr~---~~-~~--~~lRisi~~~~~e~~~l~~al~~~~~~~~~  336 (339)
T PRK06959        293 LARRGIWTRY---FA-PP--PSVRFGLPADEAEWQRLEDALAECVPTLAA  336 (339)
T ss_pred             HHhCCeEEEE---CC-CC--CeEEEECCCCHHHHHHHHHHHHHHHHHHhh
Confidence            5678999985   43 22  289999976667889999999988876653

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=100.00  E-value=1.1e-37  Score=313.48  Aligned_cols=280  Identities=19%  Similarity=0.267  Sum_probs=218.2

Q ss_pred             ccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEE
Q 009517          162 AYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVP  241 (533)
Q Consensus       162 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~  241 (533)
                      .|+..  ..+||++++++++        .++|++|+|+++++..++.  + .+||+|++++|+|+.|...++..|++++.
T Consensus        46 ~yp~~--~~~Lr~~ia~~~~--------~~~I~it~Gs~~al~~~~~--~-~~gd~v~v~~P~y~~~~~~~~~~g~~~~~  112 (330)
T PRK05664         46 RLPET--DDGLEAAARAYYG--------APQLLPVAGSQAAIQALPR--L-RAPGRVGVLSPCYAEHAHAWRRAGHQVRE  112 (330)
T ss_pred             hCCCC--hHHHHHHHHHHhC--------CCCEEECcCHHHHHHHHHH--c-cCCCEEEEcCCChHHHHHHHHHcCCeEEE
Confidence            37653  4899999999974        4799999999999998863  4 68999999999999999999999999999


Q ss_pred             EecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCC
Q 009517          242 YYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEK  321 (533)
Q Consensus       242 v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~  321 (533)
                      ++++          +++++++       +++++++++||||||.+++.+++++|+++|++++++||+||+|.++.  .  
T Consensus       113 v~~~----------~~~~~~~-------~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~--~--  171 (330)
T PRK05664        113 LDEA----------EVEAALD-------SLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNT--P--  171 (330)
T ss_pred             echh----------hHhhhhc-------CCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCC--C--
Confidence            8753          3444442       57789999999999999999999999999999999999999998743  2  


Q ss_pred             CcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhccccCChHHHHHHHHHcCCC
Q 009517          322 KFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPP  401 (533)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~~L~~~  401 (533)
                       ..++..+       .++.++|+++||||++ |+||+|+||+++   ++++++.+.+... .++.+.+.|.++..+|.+.
T Consensus       172 -~~s~~~~-------~~~~~vi~~~SfSK~~-gl~GlRiG~~v~---~~~l~~~~~~~~~-~~~~~~~~~~~~~~~L~~~  238 (330)
T PRK05664        172 -QHSLAAC-------AHRPGLIVLRSFGKFF-GLAGARLGFVLA---EPALLRALAELLG-PWTVSGPTRWLAQAALADT  238 (330)
T ss_pred             -ccccccc-------ccCCCEEEEeeccccc-cCCCcceEEEEe---CHHHHHHHHHhcC-CCCCCHHHHHHHHHHHhCh
Confidence             1232222       2334689999999999 899999999998   9999999887653 4567889999999998642


Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCce--eEEecccCCCHHHHHHHHhcCCCChHHHHHHH
Q 009517          402 KVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGA--MYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRL  479 (533)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  479 (533)
                                 .+.+.+++.++++++.+.+.|+++ |+.   +.++  +|+|++++               +...+. +.
T Consensus       239 -----------~~~~~~~~~~~~~r~~l~~~L~~~-~~~---~~~~~~~f~~~~~~---------------~~~~~~-~~  287 (330)
T PRK05664        239 -----------PWQRRQRERLLAASQRLAALLRRH-GLT---PAGGCALFQWVRTE---------------DAAALH-EF  287 (330)
T ss_pred             -----------HHHHHHHHHHHHHHHHHHHHHHHC-CCc---ccCCcceEEEEecC---------------CHHHHH-HH
Confidence                       223567888999999999999988 653   4445  77775432               133444 45


Q ss_pred             HHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHH
Q 009517          480 LNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       480 l~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~  525 (533)
                      |.++||.|.+   |+ ..  ++|||+++.+.++++++++.|+++.+
T Consensus       288 l~~~gi~v~~---f~-~~--~~iRis~~~~~~~~~~l~~al~~~~~  327 (330)
T PRK05664        288 LARRGILTRL---FE-QP--ASLRFGLPADEADWARLDQALLAYRK  327 (330)
T ss_pred             HHHCCeEEEE---CC-CC--CeEEEECCCCHHHHHHHHHHHHHHHh
Confidence            6778999985   54 22  39999998655666777766665543

>PRK08354 putative aminotransferase; Provisional

Probab=100.00  E-value=3.4e-37  Score=307.46  Aligned_cols=287  Identities=17%  Similarity=0.303  Sum_probs=211.3

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      |+.+++++.+.+..     ...|+.   ...||++++++++         ++|++|+|+++++..++..+  .+||+|++
T Consensus        22 p~~~~~a~~~~~~~-----~~~yp~---~~~l~~~ia~~~~---------~~I~vt~G~~~al~~~~~~~--~~gd~vlv   82 (311)
T PRK08354         22 PEWLDEMFERAKEI-----SGRYTY---YEWLEEEFSKLFG---------EPIVITAGITEALYLIGILA--LRDRKVII   82 (311)
T ss_pred             CHHHHHHHHHHHHH-----hhcCCC---hHHHHHHHHHHHC---------CCEEECCCHHHHHHHHHHhh--CCCCeEEE
Confidence            56777777766553     345764   4678999998873         47999999999999888644  48999999


Q ss_pred             cCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHH
Q 009517          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (533)
Q Consensus       221 ~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~  300 (533)
                      ++|+|..|..+++..|.+++.+        ++|++.+++.++       +++++++++||||||.+++.+++++|+++|+
T Consensus        83 ~~P~y~~~~~~~~~~g~~~~~~--------~~d~~~l~~~~~-------~~~~vi~~~P~NPTG~~~~~~~l~~l~~~a~  147 (311)
T PRK08354         83 PRHTYGEYERVARFFAARIIKG--------PNDPEKLEELVE-------RNSVVFFCNPNNPDGKFYNFKELKPLLDAVE  147 (311)
T ss_pred             eCCCcHHHHHHHHHcCCEEeec--------CCCHHHHHHhhc-------CCCEEEEecCCCCCCCccCHHHHHHHHHHhh
Confidence            9999999999999999999764        457888888765       3568999999999999999999999999999


Q ss_pred             HcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhh
Q 009517          301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA  380 (533)
Q Consensus       301 ~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~  380 (533)
                      ++|+++|+||+|.+|.+++. . .             +..++|+++||||+| |+||+|+||+++      +++.+.+..
T Consensus       148 ~~~~~li~De~y~~f~~~~~-~-~-------------~~~~vi~~~S~SK~~-~l~GlRiG~~v~------~~~~l~~~~  205 (311)
T PRK08354        148 DRNALLILDEAFIDFVKKPE-S-P-------------EGENIIKLRTFTKSY-GLPGIRVGYVKG------FEEAFRSVR  205 (311)
T ss_pred             hcCcEEEEeCcchhcccccc-c-c-------------CCCcEEEEeccHhhc-CCccceeeeeee------hHHHHHHcC
Confidence            99999999999999888542 1 0             123689999999999 899999999986      344454443


Q ss_pred             hccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHH
Q 009517          381 SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKA  460 (533)
Q Consensus       381 ~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~  460 (533)
                       ..+..+..++.++..++.+      .+    +++++.++.++++++.+.+.+       ..+|+++|+++ ++.     
T Consensus       206 -~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~l~~~l-------~~~~~~~~~~~-~~~-----  261 (311)
T PRK08354        206 -MPWSIGSTGYAFLEFLIED------DF----EHLRKTMPLIWREKERFEKAL-------YVKSDANFFIK-DVG-----  261 (311)
T ss_pred             -CCccCCHHHHHHHHHHHHh------HH----HHHHHHHHHHHHHHHHHHHhc-------CCCCCCcEEEE-ECC-----
Confidence             2345566777777777642      11    233444445555555544433       23577777664 332     


Q ss_pred             HHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHH
Q 009517          461 IKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTD  522 (533)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~  522 (533)
                                ++..++. .|.++||.+.||..|+. +  ++|||+++..++ .+++++.|++
T Consensus       262 ----------~~~~~~~-~l~~~gv~v~~g~~f~~-~--~~iRi~~~~~~~-~~~l~~al~~  308 (311)
T PRK08354        262 ----------DAEKFVE-FLKRNGILVRDCTSFGL-P--GYIRFSVRDREE-NEKLIRALRE  308 (311)
T ss_pred             ----------CHHHHHH-HHHHCCeEEEecccCCC-C--CeEEEEeCCHHH-HHHHHHHHHH
Confidence                      1334444 45678999999999973 3  399999985443 3555555554

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=100.00  E-value=1.1e-35  Score=308.39  Aligned_cols=378  Identities=16%  Similarity=0.175  Sum_probs=276.8

Q ss_pred             ccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCc--CCCCCCchHHHHHHhhcCCCCCCCcccccCCCC
Q 009517           64 KVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQ--SLGQQPITFFREVLALCDHPSILDRSETQGLFS  141 (533)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~--~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p  141 (533)
                      ++..++++.+..+..+++++++.|.+         +|+|++|+|.  +                      .++..    +
T Consensus        12 r~~~v~~~~~~~~~~~~~~l~~~g~~---------~~~L~~g~p~~D~----------------------~tds~----t   56 (460)
T PRK13238         12 RIKMVEPIRLTTREERERALAEAGYN---------PFLLKSEDVFIDL----------------------LTDSG----T   56 (460)
T ss_pred             eeceeccccccCHHHHHHHHHHcCCC---------EEeCCCCCCCCCC----------------------CCCCC----c
Confidence            35567788888899999999998888         9999999994  3                      22110    1


Q ss_pred             HHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEc
Q 009517          142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCP  221 (533)
Q Consensus       142 ~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~  221 (533)
                      ..+.+++.+++..    ....|++..|+.+||++++++++        .++|++|+|+++|+..++.+++ ++|| |+++
T Consensus        57 ~a~~~a~~~a~~~----g~~~Y~~~~g~~~Lreaia~~~~--------~~~vv~t~ggt~A~~~~~~all-~pGD-Vii~  122 (460)
T PRK13238         57 GAMSDRQWAAMMR----GDEAYAGSRSYYRLEDAVKDIFG--------YPYTIPTHQGRAAEQILFPVLI-KKGD-VVPS  122 (460)
T ss_pred             hhhhHHHHHHHHh----CCcccCCCCCHHHHHHHHHHHhC--------CCcEEECCCHHHHHHHHHHHhC-CCCC-EEcc
Confidence            2567777777754    35689999999999999999985        3579999999999999999998 8999 9999


Q ss_pred             CCcCcchHHHHHHhCCeEEEEecCCC------CCCC--CCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCc-cCCCHHHH
Q 009517          222 IPQYPLYSASIALHGGTLVPYYLDEA------TGWG--LETSEVKKQLEAAKAKGITVRALVVINPGNPTG-QVLAEENQ  292 (533)
Q Consensus       222 ~p~~~~~~~~~~~~g~~~~~v~~~~~------~~~~--ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG-~~~s~~~l  292 (533)
                      +|.|..|...+..+|++++.+++++.      ++|.  +|++.|++.|++..  .+++++|++++|+|||| .+++.+++
T Consensus       123 ~p~~~~~~~~i~~~G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~--~~~tk~Ivl~~p~NptGG~v~s~~~l  200 (460)
T PRK13238        123 NYHFDTTRAHIELNGATAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVG--AENVPFIVMTITNNSAGGQPVSMANL  200 (460)
T ss_pred             CCcccchHHHHHHcCCEEEEEeccccccccccccccCCcCHHHHHHHHhhcC--CCceeEEEEecCCCCCCCcCCCHHHH
Confidence            99999999999999999999998642      3455  99999999998531  02699999999999997 99999999


Q ss_pred             HHHHHHHHHcCCEEEEcccc--ccccccC----CCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCee------
Q 009517          293 RAIVDFCKKEGLVLLADEVY--QENVYVP----EKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRG------  360 (533)
Q Consensus       293 ~~i~~l~~~~~~~lI~De~y--~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~ri------  360 (533)
                      ++|+++|++||++||+|+++  ....|..    .....++..+..            .+.|++|.+ .++||++      
T Consensus       201 ~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~------------~~~s~~D~~-~~Sg~K~g~~~~G  267 (460)
T PRK13238        201 RAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAR------------EMFSYADGL-TMSAKKDAMVNIG  267 (460)
T ss_pred             HHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHhh------------hhcccCcEE-EEecccCCCCcce
Confidence            99999999999999999966  3344422    112334433321            234555555 4555554      


Q ss_pred             EEEEEecCCHHHHHHHHHhh----h-ccccCC-hHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009517          361 GYMEVTGFSAEVREQIYKVA----S-VNLCSN-ISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFN  434 (533)
Q Consensus       361 G~v~~~~~~~~~~~~l~~~~----~-~~~~~~-~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  434 (533)
                      |++++  .++++++.+....    . .++++. ...|.|++..|....          +  +...+...+++++|.+.|+
T Consensus       268 G~i~~--~d~~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~----------~--~~~~~~~~~~~~~l~~~L~  333 (460)
T PRK13238        268 GLLCF--RDEDLFTECRTLCILYEGFPTYGGLAGRDMEALAVGLYEGM----------D--EDYLAYRIGQVEYLGEGLE  333 (460)
T ss_pred             eEEEc--ChHHHHHHhhhcccccCCcccccCcHHHHHHHHHhhHHHhh----------C--hHHHHHHHHHHHHHHHHHH
Confidence            35554  1368888887663    2 345554 444666666553210          0  1111222335789999999


Q ss_pred             cCCCceEecCCceeEEecccCC-CHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCC----C------CceEE
Q 009517          435 SLEGITCNKAEGAMYLFPRIQL-PEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVP----G------TWHFR  503 (533)
Q Consensus       435 ~~~g~~~~~~~gg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~----g------~~~iR  503 (533)
                      +. |+.++.|.||+|+|+++.- ..+.    ...+. .+..++.+|+++.||.+.|+..|....    +      ...+|
T Consensus       334 ~~-G~~~~~p~Gg~~v~~d~~~~~~~~----~~~~~-~~~~~a~~L~~e~GV~~~~~~~f~~~~~~~~~~~~~~~~~~~R  407 (460)
T PRK13238        334 EA-GVPIQTPAGGHAVFVDAGKFLPHI----PAEQF-PAQALACELYLEAGIRGVEIGSLLLGRDPKTGEQLPAPAELLR  407 (460)
T ss_pred             HC-CCCeEccCCceEEEEEchhcCCCC----CCCCC-chHHHHHHHHHHcCeeeecccceecccCCCCccccCCccceEE
Confidence            98 9999999999999988751 0000    00011 246678899999999999999885322    2      35899


Q ss_pred             EEecC---CcCcHHHHHHHHHHHHH
Q 009517          504 CTILP---QEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       504 is~~~---~~e~i~~~~~~l~~~l~  525 (533)
                      +++..   +.+++++++++|+++.+
T Consensus       408 la~~rr~~~~~~~~~~~~~l~~~~~  432 (460)
T PRK13238        408 LAIPRRVYTQSHMDYVAEALKAVKE  432 (460)
T ss_pred             EecccccCCHHHHHHHHHHHHHHHH
Confidence            99974   88999999999988664

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.2e-35  Score=272.48  Aligned_cols=388  Identities=21%  Similarity=0.284  Sum_probs=277.4

Q ss_pred             cccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHH-
Q 009517           72 VRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQ-  150 (533)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~-  150 (533)
                      .+++-+.+-.++..-..|-++.+..+..|.|+.|+|..                       .|+     -....+.+.. 
T Consensus         5 ~fGdkft~~sGi~~lMdDl~d~Lrt~g~imLggGNPa~-----------------------iPe-----m~~~f~~~~ae   56 (417)
T COG3977           5 LFGDKFTRHSGITQLMDDLNDGLRTPGAIMLGGGNPAR-----------------------IPE-----MDDYFQDLLAE   56 (417)
T ss_pred             hhhHHhhhhhhHHHHHHHHHhhccCCCceeeCCCCccc-----------------------Chh-----HHHHHHHHHHH
Confidence            34444444455555555555566677799999999985                       111     1122222221 


Q ss_pred             HHhcC-CCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC--CC--CeEEEc-CCc
Q 009517          151 ILDQI-PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS--EN--DGILCP-IPQ  224 (533)
Q Consensus       151 ~~~~~-~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~--~g--d~Vlv~-~p~  224 (533)
                      .+.+. ......+|..++|...|.++++++++++||+.++++||.+|+|++.+...++..+-.+  .|  .+|++| .|.
T Consensus        57 mla~~~~~e~~cnY~~pQG~~~li~ala~~l~~~ygwnit~~NIalTnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPe  136 (417)
T COG3977          57 MLASGKATEALCNYDGPQGKAVLIDALAKMLRREYGWNITAQNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPE  136 (417)
T ss_pred             HHhcchHHHHHhcCCCCcchhHHHHHHHHHHHHHhCCCCccceeeecCCccchHHHHHHHhcCccCCCcceeEeeccChh
Confidence            12111 1113567999999999999999999999999999999999999999999999888521  23  346665 599


Q ss_pred             CcchHHHHHHhCCeEE---EEecCCCC--CCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHH
Q 009517          225 YPLYSASIALHGGTLV---PYYLDEAT--GWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC  299 (533)
Q Consensus       225 ~~~~~~~~~~~g~~~~---~v~~~~~~--~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~  299 (533)
                      |.+|.++.-.-..=+.   .+...+..  .|.+|++.+.-.  +      .+.+|++.-|.||||.+++++++.+|.++|
T Consensus       137 YiGY~d~~l~~d~fVs~kP~iel~~~g~FKY~vDF~~l~i~--e------~~g~ic~SRPtNPTGNVlTdeE~~kldalA  208 (417)
T COG3977         137 YIGYADAGLEEDLFVSAKPNIELLPAGQFKYHVDFEHLHIG--E------STGAICVSRPTNPTGNVLTDEELAKLDALA  208 (417)
T ss_pred             hccccccccCccceeeccCCcccccccceeeccCHHHcccc--c------ccceEEecCCCCCCCCcccHHHHHHHHHHh
Confidence            9998764322111111   11122222  356788887643  2      789999999999999999999999999999


Q ss_pred             HHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHh
Q 009517          300 KKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV  379 (533)
Q Consensus       300 ~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~  379 (533)
                      ++||+.+|.|.+|.- -|    |..-+.....-     .+.++|.|.|+|| + |+||.|+|.+++   ++++++.+..+
T Consensus       209 ~~~giPliIDnAYg~-PF----P~iifsd~~~~-----w~~NiilC~SLSK-~-GLPG~R~GIiIa---ne~viqaitnm  273 (417)
T COG3977         209 RQHGIPLIIDNAYGV-PF----PGIIFSDATPL-----WNENIILCMSLSK-L-GLPGSRCGIIIA---NEKVIQAITNM  273 (417)
T ss_pred             hhcCCcEEEecccCC-CC----Cceeccccccc-----CCCCEEEEeehhh-c-CCCCcceeEEEc---cHHHHHHHHhc
Confidence            999999999999963 11    11111111111     3446899999999 4 899999999998   99999999988


Q ss_pred             hh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C--CceEecCCceeEEecccC
Q 009517          380 AS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL-E--GITCNKAEGAMYLFPRIQ  455 (533)
Q Consensus       380 ~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~--g~~~~~~~gg~~~~~~~~  455 (533)
                      .. ....+..++++++..+++.++     ..+..+  +.++-.|+++.+...+.|++. |  -+.+.+|+|+.|+|+.++
T Consensus       274 n~iisLap~~~G~Aia~~mie~gd-----l~rlse--qVIrPFY~~~~q~~~~~l~~~lp~~~~~iHkpEGAIFlWLWf~  346 (417)
T COG3977         274 NGIISLAPGRMGPAIAAEMIESGD-----LLRLSE--QVIRPFYRNRVQTTIAILRRYLPEYRCLIHKPEGAIFLWLWFK  346 (417)
T ss_pred             cceeeecCCCccHHHHHHHhhcch-----HHHHHH--HhhhHHHHHHHHHHHHHHHHhcCccceeeecCCcceeehhhhc
Confidence            86 567888999999999998654     222222  334556888888777777653 3  467789999999998875


Q ss_pred             -CCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCC------CCceEEEEecCCcCcHHHHHHHHHHHHHHHH
Q 009517          456 -LPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVP------GTWHFRCTILPQEDKIPAIVTRLTDFHKNFM  528 (533)
Q Consensus       456 -~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~------g~~~iRis~~~~~e~i~~~~~~l~~~l~~~~  528 (533)
                       +|           +++.+.+  +.|++.||+++||+.|...-      ...++|+++..++++|+.++.+|.+.+++..
T Consensus       347 dLP-----------Itt~~LY--q~LKa~Gvl~VPG~~FFpGl~~ewpH~hqC~Rmn~~~~~~~ie~Gva~lae~ve~~y  413 (417)
T COG3977         347 DLP-----------ITTEELY--QRLKARGVLMVPGHYFFPGLDKEWPHTHQCMRMNYVPEPEKIEKGVAILAEEVERAY  413 (417)
T ss_pred             cCC-----------CCHHHHH--HHHHhCeEEEecccccCCCCCCCCCCccceEEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence             33           3344444  78899999999999885211      1248999999989999999999999888765


Q ss_pred             HH
Q 009517          529 DK  530 (533)
Q Consensus       529 ~~  530 (533)
                      ++
T Consensus       414 q~  415 (417)
T COG3977         414 QE  415 (417)
T ss_pred             hc
Confidence            53

>cd00609 AAT_like Aspartate aminotransferase family

Probab=100.00  E-value=5.3e-34  Score=289.59  Aligned_cols=335  Identities=27%  Similarity=0.450  Sum_probs=264.5

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      ++..+.+..+ .... . ....|.+..|..+++++++++++..++.....+++++++|+++++..++..+. .+||+|++
T Consensus        13 ~~~~~~~~~~-~~~~-~-~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~-~~g~~vl~   88 (350)
T cd00609          13 PPEVLEALAA-AALR-A-GLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALL-NPGDEVLV   88 (350)
T ss_pred             CHHHHHHHHH-Hhhc-c-CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhC-CCCCEEEE
Confidence            4555555544 1111 1 36778999999999999999999887776778899999999999999999998 78999999


Q ss_pred             cCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHH
Q 009517          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (533)
Q Consensus       221 ~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~  300 (533)
                      +.|+|.++..+++..|.+++.++.++...+..+.+.++..+.+      ++++|++++|+||||.+++.+++++|+++|+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~  162 (350)
T cd00609          89 PDPTYPGYEAAARLAGAEVVPVPLDEEGGFLLDLELLEAAKTP------KTKLLYLNNPNNPTGAVLSEEELEELAELAK  162 (350)
T ss_pred             cCCCchhHHHHHHHCCCEEEEEecccccCCccCHHHHHhhcCc------cceEEEEECCCCCCCcccCHHHHHHHHHHHH
Confidence            9999999999999999999999998654433333555555443      7999999999999999999999999999999


Q ss_pred             HcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCH-HHHHHHHHh
Q 009517          301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSA-EVREQIYKV  379 (533)
Q Consensus       301 ~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~-~~~~~l~~~  379 (533)
                      ++|+++|+|++|+++.+.+...  .   .....   .....++++.|++|.+ +++|.|+||+++   ++ ++++.+...
T Consensus       163 ~~~~~~ivD~a~~~~~~~~~~~--~---~~~~~---~~~~~~~~~~s~~K~~-~~~g~~~G~i~~---~~~~~~~~~~~~  230 (350)
T cd00609         163 KHGILIISDEAYAELVYDGEPP--P---ALALL---DAYERVIVLRSFSKTF-GLPGLRIGYLIA---PPEELLERLKKL  230 (350)
T ss_pred             hCCeEEEEecchhhceeCCccc--c---cccCc---CccCcEEEEeeccccc-CCcccceEEEec---CHHHHHHHHHHH
Confidence            9999999999999987754321  1   00111   2333578899999998 678999999998   77 888888776


Q ss_pred             hh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCH
Q 009517          380 AS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPE  458 (533)
Q Consensus       380 ~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~  458 (533)
                      .. .+++++...+.++..+|+...          ++.+++++.++++++++.+.|++.+.+.+..+.+++++|++++.+ 
T Consensus       231 ~~~~~~~~~~~~~~~~~~~l~~~~----------~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~~-  299 (350)
T cd00609         231 LPYTTSGPSTLSQAAAAAALDDGE----------EHLEELRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLDLPEG-  299 (350)
T ss_pred             HHhcccCCChHHHHHHHHHHhCcH----------HHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCccEEEEEecCCC-
Confidence            65 567889999999988886321          456778888999999999999998444435677889999765522 


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHH
Q 009517          459 KAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLT  521 (533)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~  521 (533)
                                  .....+.++|.++||.+.++..|.. .+..+|||+++...++|++++++|+
T Consensus       300 ------------~~~~~~~~~l~~~gi~i~~~~~~~~-~~~~~iRi~~~~~~~~i~~~~~al~  349 (350)
T cd00609         300 ------------DDEEFLERLLLEAGVVVRPGSAFGE-GGEGFVRLSFATPEEELEEALERLA  349 (350)
T ss_pred             ------------ChHHHHHHHHHhCCEEEeccccccc-CCCCeEEEEeeCCHHHHHHHHHHhh
Confidence                        1334466888889999999988862 3445999999855889999998885

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=100.00  E-value=5.7e-31  Score=272.39  Aligned_cols=331  Identities=15%  Similarity=0.168  Sum_probs=234.5

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      |+.+++++.+++.+... ....|....|..++++++++++.+.+|.   .++|++|+| ++++..+++.++ ++||+|++
T Consensus        58 ~~~i~~a~~~~~~~~~~-~~~~~~~~~G~~~l~~~l~~~la~~~g~---~~~i~~tsG-~~a~~~~~~~l~-~~gd~vi~  131 (397)
T PRK06939         58 HPELIAAAKAALDSHGF-GMASVRFICGTQDLHKELEEKLAKFLGT---EDAILYSSC-FDANGGLFETLL-GKEDAIIS  131 (397)
T ss_pred             CHHHHHHHHHHHHHcCC-CCcccccccCCcHHHHHHHHHHHHHhCC---CcEEEEcCh-HHHHHHHHHHhC-CCCCEEEE
Confidence            68889888888865311 1223344578899999999999988773   267888887 778888999888 89999999


Q ss_pred             cCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHH
Q 009517          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (533)
Q Consensus       221 ~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~  300 (533)
                      ++|+|+.+...+..+|++++.++.       .|++++++.+++....+.++++|++.+.+||||...+   +++|+++|+
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~---~~~l~~la~  201 (397)
T PRK06939        132 DALNHASIIDGVRLCKAKRYRYAN-------NDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAP---LPEICDLAD  201 (397)
T ss_pred             EhhhhHHHHHHHHhcCCceEEeCC-------CCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCC---HHHHHHHHH
Confidence            999999999999999999877753       4789999988764322336777877778999998655   899999999


Q ss_pred             HcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhh
Q 009517          301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA  380 (533)
Q Consensus       301 ~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~  380 (533)
                      +||++||+||+|....+.....  ..... ..+   .++ .+|++.||||++ +  |+|+||+++   ++++++.+....
T Consensus       202 ~~~~~li~De~~~~g~~~~~~~--~~~~~-~~~---~~~-~~i~~~S~sK~~-~--g~r~G~v~~---~~~~~~~l~~~~  268 (397)
T PRK06939        202 KYDALVMVDDSHAVGFVGENGR--GTVEH-FGV---MDR-VDIITGTLGKAL-G--GASGGYTAG---RKEVIDWLRQRS  268 (397)
T ss_pred             HhCCEEEEECcccccCcCCCCC--CHHHH-cCC---CCC-CcEEEEECHHHh-C--ccCceEEEe---CHHHHHHHHHhC
Confidence            9999999999996322211111  11111 111   122 358899999998 3  679999998   899998887643


Q ss_pred             h-c--cccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCC
Q 009517          381 S-V--NLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLP  457 (533)
Q Consensus       381 ~-~--~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~  457 (533)
                      . .  ....++..+.++.++++           +.++.++++++++++++++.+.|+++ ++.+..+.++++.+. +.  
T Consensus       269 ~~~~~~~~~~~~~~~a~~~al~-----------~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~-~~--  333 (397)
T PRK06939        269 RPYLFSNSLAPAIVAASIKVLE-----------LLEESDELRDRLWENARYFREGMTAA-GFTLGPGEHPIIPVM-LG--  333 (397)
T ss_pred             ccccccCCCCHHHHHHHHHHHH-----------HHhcCHHHHHHHHHHHHHHHHHHHHc-CCCcCCCCCCEEEEE-EC--
Confidence            2 1  12223344454444442           11222467788999999999999988 777777777776442 22  


Q ss_pred             HHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCC-CCCCceEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 009517          458 EKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ-VPGTWHFRCTIL--PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~-~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~~  527 (533)
                      ...          +...++..+++ +||.+.++. |+. ..+.++|||+++  .++++|++++++|++++++.
T Consensus       334 ~~~----------~~~~~~~~L~~-~gI~v~~~~-~~~~~~~~~~iRi~~~~~~~~~~i~~~l~~L~~~~~~~  394 (397)
T PRK06939        334 DAK----------LAQEFADRLLE-EGVYVIGFS-FPVVPKGQARIRTQMSAAHTKEQLDRAIDAFEKVGKEL  394 (397)
T ss_pred             CHH----------HHHHHHHHHHH-CCceEeeeC-CCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence            110          13455656555 599999654 432 234458999984  78899999999999988764

>PLN02822 serine palmitoyltransferase

Probab=100.00  E-value=2.6e-30  Score=270.71  Aligned_cols=342  Identities=15%  Similarity=0.140  Sum_probs=248.2

Q ss_pred             CHHHHHHHHHHHhcCCC---CCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCe
Q 009517          141 SADSIERAWQILDQIPG---RATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDG  217 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~---~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~  217 (533)
                      |+++++++.+++.+...   .....|++..+..+|++++|++++       .++.|++++|++ ++..++.++. ++||.
T Consensus       125 ~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~~-------~~~~i~~s~G~~-a~~sai~a~~-~~gd~  195 (481)
T PLN02822        125 NEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLG-------TPDSILYSYGLS-TIFSVIPAFC-KKGDI  195 (481)
T ss_pred             CHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHhC-------CCCEEEECCHHH-HHHHHHHHhC-CCCCE
Confidence            78999999999987421   122357888889999999999985       356799998877 5788888888 89999


Q ss_pred             EEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhc---CCCe-eEEEEeCCCCCCccCCCHHHHH
Q 009517          218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAK---GITV-RALVVINPGNPTGQVLAEENQR  293 (533)
Q Consensus       218 Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~---g~~~-~~iil~~p~NPtG~~~s~~~l~  293 (533)
                      |++....|..+...+...|.+++.++.+       |.++++..+++.+..   .+++ ++|+++.++|+||.+++   ++
T Consensus       196 Ii~d~~~H~s~~~~~~ls~~~~~~~~~n-------d~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~---L~  265 (481)
T PLN02822        196 IVADEGVHWGIQNGLYLSRSTIVYFKHN-------DMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAP---LD  265 (481)
T ss_pred             EEEeCCccHHHHHHHHHcCCeEEEECCC-------CHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccC---HH
Confidence            9988877777777888889999888765       455666655543221   1234 68888899999999999   89


Q ss_pred             HHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHH
Q 009517          294 AIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVR  373 (533)
Q Consensus       294 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~  373 (533)
                      +|+++|++||+++|+||+|+...++....  .+... ..+   ..+...|++.||||++ |++|   ||+++   +++++
T Consensus       266 ~i~~l~~k~~~~LIvDEa~s~gvlG~~G~--G~~e~-~~v---~~~~~dii~~s~sKal-g~~G---G~i~g---~~~ii  332 (481)
T PLN02822        266 EIVRLKEKYRFRVLLDESNSFGVLGKSGR--GLSEH-FGV---PIEKIDIITAAMGHAL-ATEG---GFCTG---SARVV  332 (481)
T ss_pred             HHHHHHHHcCCEEEEECCccccccCCCCC--ChHHH-cCC---CCCCCeEEEecchhhh-hhCC---eEEEc---CHHHH
Confidence            99999999999999999999766642111  11111 111   1122348899999999 7778   99988   99999


Q ss_pred             HHHHHhhh-ccccC--ChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEE
Q 009517          374 EQIYKVAS-VNLCS--NISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYL  450 (533)
Q Consensus       374 ~~l~~~~~-~~~~~--~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~  450 (533)
                      +.+..... .+++.  ++..+.++.++|+           ..+...+++++++++++++++.|++++|+.+..+.+++++
T Consensus       333 ~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~-----------~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~spi~  401 (481)
T PLN02822        333 DHQRLSSSGYVFSASLPPYLASAAITAID-----------VLEDNPSVLAKLKENIALLHKGLSDIPGLSIGSNTLSPIV  401 (481)
T ss_pred             HHHHhcCCceeeccccCHHHHHHHHHHHH-----------HHHhCHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCEE
Confidence            98875443 44544  4667777777764           1222256778899999999999999878888878889999


Q ss_pred             ecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcC--CCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHHHH
Q 009517          451 FPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPG--SGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg--~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~  526 (533)
                      ++.++.+.+....    .......++.++++++||++.|+  ..|+......++||+++  +++++|++++++|++++++
T Consensus       402 ~l~l~~~~~~~~~----~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~~t~edI~~~~~~l~~~~~~  477 (481)
T PLN02822        402 FLHLEKSTGSAKE----DLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGHTESDILKASESLKRVAAS  477 (481)
T ss_pred             EEEeCCCcccccc----hHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence            8776522100000    00012457778887899999986  44543223347999875  8999999999999999887


Q ss_pred             HHH
Q 009517          527 FMD  529 (533)
Q Consensus       527 ~~~  529 (533)
                      +..
T Consensus       478 ~~~  480 (481)
T PLN02822        478 VLK  480 (481)
T ss_pred             Hhc
Confidence            653

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=100.00  E-value=2.4e-30  Score=264.10  Aligned_cols=320  Identities=16%  Similarity=0.131  Sum_probs=224.4

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcc----cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCC
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQG----IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND  216 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G----~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd  216 (533)
                      |+++++++.+++.+... ....|....|    ..+++++++++++       .++.|++++|+ +++..++..++ ++||
T Consensus        32 ~~~v~~a~~~~~~~~~~-~~~~~~~~~g~~~~~~~l~~~la~~~~-------~~~~i~~~~G~-~~~~~~l~~~~-~~gd  101 (360)
T TIGR00858        32 HPEVIQAAQQGAEQYGA-GSTASRLVSGNSPLHEELEEELAEWKG-------TEAALLFSSGY-LANVGVISALV-GKGD  101 (360)
T ss_pred             CHHHHHHHHHHHHhcCC-CCCCcCcccCCcHHHHHHHHHHHHHhC-------CCCEEEECchH-HHHHHHHHHhC-CCCC
Confidence            68899999888865321 1222322233    4557777777763       24677777775 55556777777 7999


Q ss_pred             eEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHH
Q 009517          217 GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIV  296 (533)
Q Consensus       217 ~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~  296 (533)
                      +|+++.|+|..+...++..|.+++.++.       +|++.+++.++...  ++++++|++.+++||||...+   +++|.
T Consensus       102 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~~~~~~--~~~~~~v~~~~~~~~~G~~~~---~~~i~  169 (360)
T TIGR00858       102 LILSDALNHASLIDGCRLSGARVRRYRH-------NDVEHLERLLEKNR--GERRKLIVTDGVFSMDGDIAP---LPQLV  169 (360)
T ss_pred             EEEEEccccHHHHHHHHhcCCceEEecC-------CCHHHHHHHHHHcc--cCCCeEEEEeCCccCCCCCcC---HHHHH
Confidence            9999999999999999999999887763       58999999987520  124678888899999999887   89999


Q ss_pred             HHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHH
Q 009517          297 DFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQI  376 (533)
Q Consensus       297 ~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l  376 (533)
                      ++|+++|+++|+||+|..+.++..  ..+.... ..+   .++..+|++.||||+| |++|   ||+++   ++++++.+
T Consensus       170 ~l~~~~~~~li~De~~~~~~~~~~--~~~~~~~-~~~---~~~~~~i~i~s~sK~~-~~~g---G~~~~---~~~~~~~~  236 (360)
T TIGR00858       170 ALAERYGAWLMVDDAHGTGVLGED--GRGTLEH-FGL---KPEPVDIQVGTLSKAL-GSYG---AYVAG---SQALIDYL  236 (360)
T ss_pred             HHHHHcCcEEEEECcccccCcCCC--CCchHHh-cCC---CccCCcEEEEechhhh-hccC---cEEEc---CHHHHHHH
Confidence            999999999999999987655432  1121121 112   2345689999999998 6555   99987   88888887


Q ss_pred             HHhhh---ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecc
Q 009517          377 YKVAS---VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPR  453 (533)
Q Consensus       377 ~~~~~---~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~  453 (533)
                      .....   .+.+.++..+.++.++++           +....+.++++++++++++.+.|+++ ++.+.++ ++.++|+.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~a~~~al~-----------~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~-~~~~~~~~  303 (360)
T TIGR00858       237 INRARTLIFSTALPPAVAAAALAALE-----------LIQEEPWRREKLLALIARLRAGLEAL-GFTLMPS-CTPIVPVI  303 (360)
T ss_pred             HHhCccceecCCCCHHHHHHHHHHHH-----------HHhhCHHHHHHHHHHHHHHHHHHHHc-CCccCCC-CCCEEEEE
Confidence            65432   123345555555555553           22223456788999999999999998 7776644 45567755


Q ss_pred             cCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHH
Q 009517          454 IQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLT  521 (533)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~  521 (533)
                      ++...            ++..+... |.++||.+.++..++...+.+++||++.  ++++++++++++|+
T Consensus       304 ~~~~~------------~~~~~~~~-l~~~gI~v~~~~~~~~~~~~~~iRis~~~~~~~~~i~~~l~~l~  360 (360)
T TIGR00858       304 IGDNA------------SALALAEE-LQQQGIFVGAIRPPTVPAGTSRLRLTLSAAHTPGDIDRLAEALK  360 (360)
T ss_pred             eCCHH------------HHHHHHHH-HHHCCeeEeeeCCCCCCCCCceEEEEEcCCCCHHHHHHHHHhhC
Confidence            43110            13344444 4568999999877653344568999997  68899999998773

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=100.00  E-value=7.2e-30  Score=256.70  Aligned_cols=304  Identities=16%  Similarity=0.172  Sum_probs=220.7

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      .+.+++++.+.+...        +   |..++.+++.+.+.+.+|  .+++++++++|+.+|+..++.+++ ++||+|++
T Consensus        35 ~~~~~~~~~~~~~~~--------~---g~~~~~~~Le~~lA~~~g--~~~e~ilv~~gg~~a~~~~~~al~-~~gd~Vli  100 (346)
T TIGR03576        35 GFKIDEEDLELLETY--------V---GPAIFEEKVQELGREHLG--GPEEKILVFNRTSSAILATILALE-PPGRKVVH  100 (346)
T ss_pred             ChhHHHHHHHHHHHh--------c---CCHHHHHHHHHHHHHHcC--CCcceEEEECCHHHHHHHHHHHhC-CCCCEEEE
Confidence            578888888888762        1   333444444444444445  567899999999999999999998 89999997


Q ss_pred             c---CCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHH
Q 009517          221 P---IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD  297 (533)
Q Consensus       221 ~---~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~  297 (533)
                      +   .|+|..|...++..|++++.+         .|++.++. .       +++++|+++ ++||+|.+++.+++++|++
T Consensus       101 ~~~d~p~~~s~~~~~~l~ga~~~~~---------~~l~~l~~-~-------~~~~lIiit-g~s~~G~v~~~~~L~~i~~  162 (346)
T TIGR03576       101 YLPEKPAHPSIPRSCKLAGAEYFES---------DELSELKK-I-------DGTSLVVIT-GSTMDLKVVSEEDLKRVIK  162 (346)
T ss_pred             CCCCCCCchhHHHHHHHcCCEEecc---------CCHHHHhh-C-------cCceEEEEE-CCCCCCcccCHHHHHHHHH
Confidence            5   479999999999999886432         14555322 1       157777774 5799999999999999999


Q ss_pred             HHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHH
Q 009517          298 FCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY  377 (533)
Q Consensus       298 l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~  377 (533)
                      +|+++|+++|+||+|..+...... ..+..    ..   ..+   |++.||||++   +|+|+||+++   ++++++.+.
T Consensus       163 la~~~~~~livDEAy~~~~~~~~~-~~~~~----~~---~~d---ivv~s~SKal---aG~r~G~v~~---~~~li~~l~  225 (346)
T TIGR03576       163 QAKSKEAIVLVDDASGARVRRLYG-QPPAL----DL---GAD---LVVTSTDKLM---DGPRGGLLAG---RKELVDKIK  225 (346)
T ss_pred             HHHHcCCEEEEECCccccccccCC-CCCHH----Hc---CCc---EEEeccchhc---cccceEEEEe---CHHHHHHHH
Confidence            999999999999999876532100 11111    11   123   6678999954   6999999998   999999998


Q ss_pred             Hhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCC
Q 009517          378 KVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQL  456 (533)
Q Consensus       378 ~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~  456 (533)
                      +... ..++.+++.|.++.++|+..           . .+.+++.++++++++.+.++++   .+.++.++ |+|++++.
T Consensus       226 ~~~~~~~~s~~~~~~~aa~~aL~~~-----------~-~~~~~~~l~~r~~~~~~~l~~~---~~~~~~~~-f~~~~~~~  289 (346)
T TIGR03576       226 SVGEQFGLEAQAPLLAAVVRALEEF-----------E-LSRIRDAFKRKEEVYLRLFDKL---NVERTPTG-FVIKGVEE  289 (346)
T ss_pred             HhhcCcccCccHHHHHHHHHHHhhc-----------c-HHHHHHHHHHHHHHHHHHHHhC---CCCcCCCe-EEEEeCCC
Confidence            8765 34556888888888888531           1 2445677888888888888754   44444555 78876641


Q ss_pred             CHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcC---cHHHHHHHHHHHH
Q 009517          457 PEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQED---KIPAIVTRLTDFH  524 (533)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e---~i~~~~~~l~~~l  524 (533)
                                   .++..++.++|+++||.++||..|..  ..+|+|||++.+++   +.+.++++|++.+
T Consensus       290 -------------~~~~~~~~~ll~~~gV~v~~~~~f~~--~~~~vRis~~~~~~~~~~~~~~~~al~~~~  345 (346)
T TIGR03576       290 -------------EKLIEIGLDLLRNYGIITITAVGMPG--ASKTLRFDLAAKDAERIGDDYLVEAVKDSL  345 (346)
T ss_pred             -------------CCHHHHHHHHHHhCCEEEeCCcccCC--CCCeEEEEEecChHHhcCHHHHHHHHHhcc
Confidence                         12345677899999999999998842  23499999997664   6788888887654

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=100.00  E-value=5.2e-30  Score=262.40  Aligned_cols=362  Identities=15%  Similarity=0.231  Sum_probs=255.9

Q ss_pred             HHHHHHHHhhcCCCCCCccceeeccCCCC--cCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCC
Q 009517           79 IAQRLQQELQTNPGSHSFDEILYCNIGNP--QSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIP  156 (533)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~l~~G~p--~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~  156 (533)
                      +++++++.|.+         ++.|..|+|  ++                      .++.   + -..+.++..+++..  
T Consensus         2 r~~~l~~~g~n---------~~~l~~~~v~iDl----------------------ltds---~-t~ams~~~~~a~~~--   44 (431)
T cd00617           2 RERALKEAGYN---------VFLLRSEDVYIDL----------------------LTDS---G-TGAMSDYQWAAMML--   44 (431)
T ss_pred             hHHHHHHcCCC---------EEeCCCCCcCCCC----------------------CCCC---C-cHHHHHHHHHHHHh--
Confidence            56777887777         999999998  43                      2200   0 13455555666654  


Q ss_pred             CCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhC
Q 009517          157 GRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHG  236 (533)
Q Consensus       157 ~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g  236 (533)
                        ....|++..|+.+|+++++++++        .+++++|+|+++|+..++.+++ +|||+| +++|+|..+...+...|
T Consensus        45 --gd~~Y~~~~g~~~Leeaia~~~g--------~~~vv~t~~Gt~Al~la~~al~-~pGD~V-~~~~~f~~~~~~i~~~G  112 (431)
T cd00617          45 --GDEAYAGSKSFYDLEDAVQDLFG--------FKHIIPTHQGRGAENILFSILL-KPGRTV-PSNMHFDTTRGHIEANG  112 (431)
T ss_pred             --CCCccCCCCCHHHHHHHHHHHHC--------CCeEEEcCCHHHHHHHHHHHhC-CCCCEE-ccCCcccchHHHHHhCC
Confidence              24569999999999999999985        3589999999999999999998 899987 69999999999999999


Q ss_pred             CeEEEEecCCCCC------CC--CCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCC-ccCCCHHHHHHHHHHHHHcCCEEE
Q 009517          237 GTLVPYYLDEATG------WG--LETSEVKKQLEAAKAKGITVRALVVINPGNPT-GQVLAEENQRAIVDFCKKEGLVLL  307 (533)
Q Consensus       237 ~~~~~v~~~~~~~------~~--ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPt-G~~~s~~~l~~i~~l~~~~~~~lI  307 (533)
                      ++++.+++++..+      |.  +|++.|+++|++.  ...++++|++++|+||+ |.+++.+++++|.++|++||++||
T Consensus       113 a~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~--~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li  190 (431)
T cd00617         113 AVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEV--GAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVV  190 (431)
T ss_pred             CEeEEEecccccccccccCCCCCcCHHHHHHHhCcc--cCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence            9999999986533      44  9999999999862  01148899999999998 999999999999999999999999


Q ss_pred             Eccccc--ccccc----CCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCe------eEEEEEecCCH-HHHH
Q 009517          308 ADEVYQ--ENVYV----PEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKR------GGYMEVTGFSA-EVRE  374 (533)
Q Consensus       308 ~De~y~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~r------iG~v~~~~~~~-~~~~  374 (533)
                      +|++..  ...|.    ++....++..+..            .+.|++|.+ .|+|||      .||+++   ++ ++++
T Consensus       191 ~DaAr~~~na~~i~~r~~g~~~~si~ei~~------------e~~s~sd~~-~mS~~K~~~~~~GG~i~~---~d~~l~~  254 (431)
T cd00617         191 LDAARFAENAYFIKEREEGYRDKSIAEIAR------------EMFSYADGC-TMSAKKDGLVNIGGFLAL---RDDELYE  254 (431)
T ss_pred             EEchhhHhhhhhhhcccccccCCCHHHHHH------------HhhccCCEE-EEEeecCCCCccceEEEe---CcHHHHH
Confidence            999943  22221    1223344444322            256677776 567776      668887   54 6888


Q ss_pred             HHHHhh----h-ccccC-ChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCcee
Q 009517          375 QIYKVA----S-VNLCS-NISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAM  448 (533)
Q Consensus       375 ~l~~~~----~-~~~~~-~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~  448 (533)
                      +++...    . .++++ +.....+++..|+...          + .+.+.++++ ++++|.+.|.+. |+.++.|.|++
T Consensus       255 ~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e~~----------~-~~~l~~~~~-~r~~l~~~L~~~-G~~v~~P~Ggh  321 (431)
T cd00617         255 EARQRVVLYEGFVTYGGMAGRDMEALAQGLREAV----------E-EDYLRHRVE-QVRYLGDRLDEA-GVPIVEPAGGH  321 (431)
T ss_pred             HHHHhccccCCccccccccHHHHHHHHHHHHhcc----------c-HHHHHHHHH-HHHHHHHHHHHC-CCCccCCCcce
Confidence            877432    1 12222 2222333333453211          0 122333333 558999999998 99999999999


Q ss_pred             EEecccC--CCHHHHHHHHhcCCCChHHHHHHHHHccceEEEc-CCC-CCC--CCC------CceEEEEec---CCcCcH
Q 009517          449 YLFPRIQ--LPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVP-GSG-FGQ--VPG------TWHFRCTIL---PQEDKI  513 (533)
Q Consensus       449 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~p-g~~-f~~--~~g------~~~iRis~~---~~~e~i  513 (533)
                      |+|++++  +|..     ...+ -++..++.+++++.||.+.- |.. ++.  ..+      -..+|+++.   -+.+++
T Consensus       322 ~v~~d~~~~~~~~-----~~~~-~~~~~la~~L~~e~gV~~~~~g~~~~~~~~~~~~~~~~~~~~~rl~~prr~~t~~~~  395 (431)
T cd00617         322 AVFIDAREFLPHI-----PQEQ-FPAQALAAELYLEAGVRAVELGIFSAGRDPNTGENKYPELELVRLAIPRRVYTQDHM  395 (431)
T ss_pred             EEEEEhHHhcCCC-----Cccc-CcHHHHHHHHHHHcCeeEEeecceecccCCCCCcccCCccceeEEeccccccCHHHH
Confidence            9998765  1100     0000 14667788999999999654 441 121  111      247999993   688899


Q ss_pred             HHHHHHHHHHHHH
Q 009517          514 PAIVTRLTDFHKN  526 (533)
Q Consensus       514 ~~~~~~l~~~l~~  526 (533)
                      +.++++|.+++++
T Consensus       396 ~~~~~~~~~~~~~  408 (431)
T cd00617         396 DYVAAAVIALYER  408 (431)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988876

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=99.98  E-value=9.1e-30  Score=262.98  Aligned_cols=324  Identities=18%  Similarity=0.196  Sum_probs=230.5

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCc---cc----HHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQ---GI----KGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS  213 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~---G~----~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~  213 (533)
                      ++++++++.+++.+.    ..+|++..   |.    .+|++++|++++        .+++++++|+++|+..++.+++ +
T Consensus        54 ~~~v~~~~~~~~~~~----~~~~~~s~~~~G~~~~~~~le~~ia~~~g--------~~~~ii~~~~~~a~~~~~~~l~-~  120 (393)
T TIGR01822        54 HPDLIQAAKDALDEH----GFGMSSVRFICGTQDIHKELEAKIAAFLG--------TEDTILYASCFDANGGLFETLL-G  120 (393)
T ss_pred             CHHHHHHHHHHHHHh----CCCCCCcCcccCChHHHHHHHHHHHHHhC--------CCcEEEECchHHHHHHHHHHhC-C
Confidence            688999999888762    13465555   75    788888888875        2578888999999999999998 8


Q ss_pred             CCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHH
Q 009517          214 ENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQR  293 (533)
Q Consensus       214 ~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~  293 (533)
                      +||+|+++.|+|+.+...+...+.+.+.++       .+|++++++++++....+.++++|++.+++||||.+.+   ++
T Consensus       121 ~gd~vi~~~~~~~s~~~~~~~~~~~~~~~~-------~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~---l~  190 (393)
T TIGR01822       121 AEDAIISDALNHASIIDGVRLCKAKRYRYA-------NNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAP---LD  190 (393)
T ss_pred             CCCEEEEeccccHHHHHHHHhcCCceEEeC-------CCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCC---HH
Confidence            999999999999999998888887765543       46899999999864322336888888899999999988   89


Q ss_pred             HHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHH
Q 009517          294 AIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVR  373 (533)
Q Consensus       294 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~  373 (533)
                      +|+++|++||+++|+||+|....+ +.. ....... .++   .++ ..+++.|+||++ +  |+|+||+++   +++++
T Consensus       191 ~i~~la~~~~~~li~De~~~~g~~-~~~-~~~~~~~-~~~---~~~-~di~~~s~sK~l-~--g~r~G~~~~---~~~~~  257 (393)
T TIGR01822       191 EICDLADKYDALVMVDECHATGFL-GPT-GRGSHEL-CGV---MGR-VDIITGTLGKAL-G--GASGGFTTA---RKEVV  257 (393)
T ss_pred             HHHHHHHHcCCEEEEECCccccCc-CCC-CCchHHh-cCC---CCC-CeEEEEEChHHh-h--CCCcEEEEe---CHHHH
Confidence            999999999999999999953222 211 1111111 111   122 358899999987 3  789999988   89999


Q ss_pred             HHHHHhhh-c-ccc-CChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEE
Q 009517          374 EQIYKVAS-V-NLC-SNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYL  450 (533)
Q Consensus       374 ~~l~~~~~-~-~~~-~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~  450 (533)
                      +.+.+... . ..+ .++..+.++..+|+           ..+..++++++++++++++.+.|++. |+.+..+.+.++.
T Consensus       258 ~~l~~~~~~~~~~~~~~~~~~~a~~~al~-----------~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~  325 (393)
T TIGR01822       258 ELLRQRSRPYLFSNSLPPAVVGASIKVLE-----------MLEASNELRDRLWANTRYFRERMEAA-GFDIKPADHPIIP  325 (393)
T ss_pred             HHHHHhCccceecCCCCHHHHHHHHHHHH-----------HHhcCHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCCCEEE
Confidence            98876432 1 122 23444444445442           12234567788999999999999887 8776655555443


Q ss_pred             ecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCC-CCCCceEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 009517          451 FPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ-VPGTWHFRCTIL--PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~-~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~~  527 (533)
                      +   ..+...          ....++..++ ++||.+. +..|.. ..+...+||+++  .++++|++++++|+++++++
T Consensus       326 i---~~~~~~----------~~~~l~~~L~-~~gI~v~-~~~~~~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~~~~  390 (393)
T TIGR01822       326 V---MLYDAV----------LAQRFARRLL-EEGIYVT-GFFYPVVPKGQARIRVQISAAHTEEQLDRAVEAFTRIGREL  390 (393)
T ss_pred             E---EeCCHH----------HHHHHHHHHH-HCCeeEe-eeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence            3   222110          1344555555 5699998 555532 234457999885  78999999999999987654

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]

Probab=99.98  E-value=6.3e-31  Score=236.98  Aligned_cols=308  Identities=18%  Similarity=0.310  Sum_probs=238.5

Q ss_pred             cccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCC-CeEEEcCCcCcchHHHHHHhCCeE
Q 009517          161 GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-DGILCPIPQYPLYSASIALHGGTL  239 (533)
Q Consensus       161 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vlv~~p~~~~~~~~~~~~g~~~  239 (533)
                      ..|++.. -.+++.+++.-      -++++|+|+++.|+.|.+..++++.+ .|| ++|+...|+|..|...+...++.+
T Consensus        64 ~~~~d~r-nk~ls~a~~~d------kpLt~dnic~GvGsDE~ID~iiR~~c-~PGkeKIl~cPPtysMY~v~A~iNd~eV  135 (375)
T KOG0633|consen   64 YVYPDPR-NKRLSDALAQD------KPLTSDNICVGVGSDELIDLIIRCVC-DPGKEKILDCPPTYSMYVVDAAINDAEV  135 (375)
T ss_pred             cccCCcc-cchhhhhcccC------CCCCccceEEecCcHHHHHHHHhhee-cCCccceeecCCcceeEEEEeecCCceE
Confidence            4466655 45566555543      24789999999999999999999999 899 899999999999999999999999


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccC
Q 009517          240 VPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVP  319 (533)
Q Consensus       240 ~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~  319 (533)
                      +.+|+.+  +|.+|.|++.+.++..    ..+|.+++++|+||||..+..+++++|.+.-.  |.++++||+|-+|  .|
T Consensus       136 vkvpl~p--dF~lnvdai~evl~~d----s~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~--nglVVvDEAYidF--sg  205 (375)
T KOG0633|consen  136 VKVPLNP--DFSLNVDAIAEVLELD----SKIKCIFLTSPGNPTGSIIKEDDILKILEMPD--NGLVVVDEAYIDF--SG  205 (375)
T ss_pred             EEecCCC--CccccHHHHHHHHhcc----ccceEEEEcCCCCCCcccccHHHHHHHHhCCC--CcEEEEeeeeEee--cc
Confidence            9999986  7999999999999863    37899999999999999999999999988654  7899999999994  45


Q ss_pred             CCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhccccCChHHHHHHHHHcC
Q 009517          320 EKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMS  399 (533)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~~L~  399 (533)
                      ..   |-..++..    ++  +++++++|||.| |++|+|+||-..   +.++++-+.++... ++.+..+..++.++|.
T Consensus       206 ~~---S~~~lV~k----Yp--NLivlqTlSKsf-GLAGiRvG~~~~---~~~ia~iln~~KaP-YNiS~~~s~~AL~Als  271 (375)
T KOG0633|consen  206 VE---SRMKLVKK----YP--NLIVLQTLSKSF-GLAGIRVGYGAF---PLSIAEILNRAKAP-YNISVAGSVAALAALS  271 (375)
T ss_pred             cc---ccchHhHh----CC--ceeehhhhhhhc-CcceeEeecccc---cHHHHHHHHhccCC-ccccchhHHHHHHhcC
Confidence            21   22233333    34  489999999999 999999999987   99999988887754 7788888888888887


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce-EecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHH
Q 009517          400 PPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGIT-CNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRR  478 (533)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (533)
                      +.         ..+.++..++.+.+.|.+|...|.++|++. ++.+.-+.|+.+.+.....          .-+.....+
T Consensus       272 ~~---------n~kkme~~rdaiv~er~RL~keLt~v~~~~~~~gg~daNFiLi~v~~~~n----------~~akkly~q  332 (375)
T KOG0633|consen  272 DS---------NGKKMEDVRDAIVRERERLFKELTEVPFLNDYPGGSDANFILIEVTGGDN----------GMAKKLYKQ  332 (375)
T ss_pred             cc---------cchHHHHHHHHHHHHHHHHHHHhhcCccccCCCCcccccEEEEEEcCCCc----------HHHHHHHHH
Confidence            43         234567788888899999999999998766 3344445566655542211          012333456


Q ss_pred             HHHccceEEEcCCCCCCCC-CCceEEEEecCCcCcHHHHHHHHHHH
Q 009517          479 LLNATGIVLVPGSGFGQVP-GTWHFRCTILPQEDKIPAIVTRLTDF  523 (533)
Q Consensus       479 ll~~~gV~v~pg~~f~~~~-g~~~iRis~~~~~e~i~~~~~~l~~~  523 (533)
                      ++.+.||.|+-   .|..+ -.+++||+.+.++|+ ..+++.|+++
T Consensus       333 ~at~~gVvVRf---rgse~~c~G~lRitvGt~Een-tvL~k~~K~~  374 (375)
T KOG0633|consen  333 DATKMGVVVRF---RGSEEGCKGYLRITVGTPEEN-TVLMKCLKQF  374 (375)
T ss_pred             HHHhcceEEEE---cCCccccceeEEEEcCCcccc-hHHHHHHHhh
Confidence            67789999983   22222 345999999977776 7788887765

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=99.98  E-value=7.3e-31  Score=271.43  Aligned_cols=351  Identities=14%  Similarity=0.168  Sum_probs=240.9

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      ++.++++...++.||++      +|||..|.+..                      ..+.+    ++.+.+++.+++...
T Consensus        24 ~~~~~~G~~~~d~dg~~------~iD~~~g~~~~----------------------~lG~~----~p~v~~a~~~~~~~~   71 (396)
T PRK02627         24 AFVRGEGARLWDDDGKE------YLDFLAGIAVN----------------------NLGHC----HPKLVEAIQEQAAKL   71 (396)
T ss_pred             eEEeeeeCEEEeCCCCE------EEECCccHHhc----------------------cCCCC----CHHHHHHHHHHHhhc
Confidence            44555555555556666      99999887653                      11100    478888988888753


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCC-------CeEEEcCCcCcch
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-------DGILCPIPQYPLY  228 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-------d~Vlv~~p~~~~~  228 (533)
                      ..      ....+..++++++++++.+..+    .+++++++|+++|+..+++.++ ..+       ++|++..++|+++
T Consensus        72 ~~------~~~~~~~~~~~~la~~l~~~~~----~~~v~~~~gg~eA~~~al~~a~-~~~~~~~~~~~~ii~~~~~yhg~  140 (396)
T PRK02627         72 IH------TSNLYYIEPQEELAEKLVELSG----MDKVFFCNSGAEANEAAIKLAR-KYGHKKGIEKPEIITAENSFHGR  140 (396)
T ss_pred             cc------cccccCCHHHHHHHHHHHhhcC----CCEEEECCCcHHHHHHHHHHHH-HHhcccCCCCCeEEEECCCcCcc
Confidence            21      1112236788888888887644    4799999999999999999775 322       6799999999998


Q ss_pred             HHHHHHhCCeEE-EEecCC-CCCC----CCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCc-cCCCHHHHHHHHHHHHH
Q 009517          229 SASIALHGGTLV-PYYLDE-ATGW----GLETSEVKKQLEAAKAKGITVRALVVINPGNPTG-QVLAEENQRAIVDFCKK  301 (533)
Q Consensus       229 ~~~~~~~g~~~~-~v~~~~-~~~~----~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG-~~~s~~~l~~i~~l~~~  301 (533)
                      .......+.... .....+ ..++    ..|++++++++.+      ++++|++++++|||| .+++++.+++|.++|++
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~------~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~  214 (396)
T PRK02627        141 TLATLSATGQPKYQEGFEPLVEGFIYVPFNDIEALKAAITD------KTAAVMLEPIQGEGGVNPADKEYLQALRELCDE  214 (396)
T ss_pred             cHHHHHhcCCccccccCCCCCCCceEeCCCCHHHHHHhcCC------CeEEEEEecccCCCCCccCCHHHHHHHHHHHHH
Confidence            766655543221 111111 0111    1289999998854      799999999999999 68899999999999999


Q ss_pred             cCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhh-
Q 009517          302 EGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA-  380 (533)
Q Consensus       302 ~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~-  380 (533)
                      ||+++|+||+|.+|.+.+.  ..++..  .++   .+|     +.+|||.+ + +|+|+||+++   ++++++.+.... 
T Consensus       215 ~~~~lI~DE~~~g~g~~g~--~~~~~~--~~~---~pd-----i~t~sK~~-~-~G~rig~~~~---~~~~~~~~~~~~~  277 (396)
T PRK02627        215 NGILLILDEVQTGMGRTGK--LFAYQH--YGI---EPD-----IMTLAKGL-G-GGVPIGAVLA---KEKVADVFTPGDH  277 (396)
T ss_pred             cCCEEEEechhcCCCccCc--eeeehh--cCC---CCC-----EEEEcchh-h-CCcccEEEEE---cHHHHhccCCCCC
Confidence            9999999999999876553  222211  122   455     45799999 6 7999999998   888988876543 


Q ss_pred             hccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCceEecCCceeEEecccCC
Q 009517          381 SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNS----LEGITCNKAEGAMYLFPRIQL  456 (533)
Q Consensus       381 ~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~g~~~~~~~gg~~~~~~~~~  456 (533)
                      ..+++.+++.|+++.++|+...           . +...++++++.+.+++.|.+    .+.+..+++ .|+++|+.+..
T Consensus       278 ~~t~~~~~~~~~aa~~~l~~~~-----------~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~g~~~~i~~~~  344 (396)
T PRK02627        278 GSTFGGNPLACAAALAVIEIIE-----------E-EGLLENAAEVGEYLRAKLRELLEKYPGIKEVRG-LGLMIGIELDR  344 (396)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHh-----------h-ccHHHHHHHHHHHHHHHHHHHHHhCCCeeeecc-CcEEEEEEecC
Confidence            3678899999999998885211           0 12233344444444444433    334444445 35667765521


Q ss_pred             CHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEe--cCCcCcHHHHHHHHHHHHHHH
Q 009517          457 PEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTI--LPQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~--~~~~e~i~~~~~~l~~~l~~~  527 (533)
                                    +...++.++++ +||.+.|+.       .+++||++  ..+++++++++++|+++++++
T Consensus       345 --------------~~~~~~~~l~~-~Gv~v~~~~-------~~~lRi~~~~~~~~~~i~~~~~~l~~~l~~~  395 (396)
T PRK02627        345 --------------PAAEIVKKALE-KGLLINVTG-------DNVLRLLPPLIISKEEIDEAVDRLEEVLKEL  395 (396)
T ss_pred             --------------cHHHHHHHHHH-CCeEEeecC-------CCEEEEECCcccCHHHHHHHHHHHHHHHHhh
Confidence                          13445556554 599999853       23899987  488999999999999988764

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=99.98  E-value=1.7e-30  Score=267.70  Aligned_cols=322  Identities=15%  Similarity=0.153  Sum_probs=217.9

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc---CCCC-
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR---SEND-  216 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~---~~gd-  216 (533)
                      ++++++++.+++.+...... .|     ..+....+++.+.+..    ..++|++++|+++|++.+++++..   .+|| 
T Consensus        49 ~p~v~~a~~~~~~~~~~~~~-~~-----~~~~~~~la~~l~~~~----~~~~v~~~~sGseA~~~al~~ar~~~~~~G~~  118 (389)
T PRK01278         49 HPHLVEALKEQAEKLWHVSN-LY-----RIPEQERLAERLVENS----FADKVFFTNSGAEAVECAIKTARRYHYGKGHP  118 (389)
T ss_pred             CHHHHHHHHHHHHhcCcccc-cc-----CChHHHHHHHHHHhhC----CCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCC
Confidence            68999999999876321111 11     2233444555554432    246899999999999999998731   3555 


Q ss_pred             ---eEEEcCCcCcchHHHHHHhCCeEEEEecC-C-CCCCC----CCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCc-cC
Q 009517          217 ---GILCPIPQYPLYSASIALHGGTLVPYYLD-E-ATGWG----LETSEVKKQLEAAKAKGITVRALVVINPGNPTG-QV  286 (533)
Q Consensus       217 ---~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~-~-~~~~~----ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG-~~  286 (533)
                         +|++.++.|+++...+...+......... + ..++.    .|++.+++.+++      ++++|+++.++||+| .+
T Consensus       119 ~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~------~~~avivep~~~~~G~~~  192 (389)
T PRK01278        119 ERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGDIEALKAAITP------NTAAILIEPIQGEGGIRP  192 (389)
T ss_pred             CCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCCCCHHHHHHhhCC------CeEEEEEecccCCCCCcC
Confidence               89999999999987776665443222110 0 11222    589999999875      799999998899999 78


Q ss_pred             CCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEe
Q 009517          287 LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVT  366 (533)
Q Consensus       287 ~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~  366 (533)
                      ++.+.+++|+++|++||+++|+||+|+++.+.|.  ......  ..+   .+|     +.||||.+ + +|+|+||+++ 
T Consensus       193 ~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~--~~~~~~--~~~---~pd-----i~t~sK~l-~-~G~~ig~~~~-  257 (389)
T PRK01278        193 APDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGK--LFAHEW--AGV---TPD-----IMAVAKGI-G-GGFPLGACLA-  257 (389)
T ss_pred             CCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCc--ceeecc--cCC---CCC-----EEEEehhc-c-CCcceEEEEE-
Confidence            9999999999999999999999999999876553  111111  122   456     56899999 5 7999999998 


Q ss_pred             cCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CceEecC
Q 009517          367 GFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLE-GITCNKA  444 (533)
Q Consensus       367 ~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~~~~~  444 (533)
                        ++++++.+..... .+++.++++|+++.++|+...     -+.+.++++++.+.++++.+.+.+   +.+ -+..+++
T Consensus       258 --~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~-----~~~~~~~~~~~~~~l~~~l~~l~~---~~~~~~~~v~g  327 (389)
T PRK01278        258 --TEEAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVIL-----APGFLDNVQRMGLYLKQKLEGLVD---RFPDVIEEVRG  327 (389)
T ss_pred             --cHHHHhccCCCCCCCCCCccHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHHh---hCCCceeeEec
Confidence              8888888765543 677899999999988774210     001223333344444444333322   233 2444566


Q ss_pred             CceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHH
Q 009517          445 EGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTD  522 (533)
Q Consensus       445 ~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~  522 (533)
                      . |+++|+.+..              +...++.++++ +||.+.|+.       .+++||++.  .++++|++++++|++
T Consensus       328 ~-G~~~~i~~~~--------------~~~~~~~~l~~-~GV~~~p~~-------~~~lR~~p~~~~~~~~i~~~l~~l~~  384 (389)
T PRK01278        328 K-GLLLGLKCVV--------------PNRDLVQALRD-EGLLTVGAG-------DNVVRLLPPLIITEEEIDEALERLER  384 (389)
T ss_pred             c-cEEEEEEEec--------------CHHHHHHHHHH-CCeEEeecC-------CCEEEEeCCcccCHHHHHHHHHHHHH
Confidence            4 4556654431              13455556555 599999862       238999974  889999999999999


Q ss_pred             HHHH
Q 009517          523 FHKN  526 (533)
Q Consensus       523 ~l~~  526 (533)
                      ++++
T Consensus       385 ~l~~  388 (389)
T PRK01278        385 AAES  388 (389)
T ss_pred             HHHh
Confidence            8865

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=99.97  E-value=4.3e-29  Score=257.27  Aligned_cols=327  Identities=16%  Similarity=0.168  Sum_probs=235.5

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      ++.+++++.+++.+... ....|.+..|..++++++++++.+.+|.   ++.|++++| ++++..++..++ ++||.|++
T Consensus        49 ~~~~~~a~~~~~~~~~~-~~~~~~~~~g~~~l~~~l~~~l~~~~g~---~~~i~~~sG-~~a~~~a~~~~~-~~gd~vi~  122 (385)
T TIGR01825        49 HPRLKEAAAQAIQQYGV-GAGAVRTIAGTLRLHEELEEKLAKFKKT---EAALVFQSG-FNTNQGVLSALL-RKGDIVLS  122 (385)
T ss_pred             CHHHHHHHHHHHHHcCC-CCCccCcccCCcHHHHHHHHHHHHHhCC---CcEEEECcH-HHHHHHHHHHhC-CCCCEEEE
Confidence            68888888888875322 2456888899999999999999987773   356777777 567778888887 89999999


Q ss_pred             cCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHH
Q 009517          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (533)
Q Consensus       221 ~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~  300 (533)
                      +.|+|..+...+...|.++..++       .+|++++++.+++..  .+++++|++++++||||.+.+   +++|+++|+
T Consensus       123 ~~~~~~~~~~~~~~~g~~~~~~~-------~~d~~~l~~~l~~~~--~~~~~~v~~~~v~~~tG~~~~---~~~i~~l~~  190 (385)
T TIGR01825       123 DELNHASIIDGLRLTKATKKIYK-------HADMDDLDRVLRENP--SYGKKLIVTDGVFSMDGDVAP---LPEIVELAE  190 (385)
T ss_pred             EccccHHHHHHHHhcCCceEEeC-------CCCHHHHHHHHHhhc--cCCCeEEEEecCCcCCCCccC---HHHHHHHHH
Confidence            99999999888888888876653       578999998887531  125788888889999999988   889999999


Q ss_pred             HcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhh
Q 009517          301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA  380 (533)
Q Consensus       301 ~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~  380 (533)
                      +||+++|+||+|..+.+..... .....+  .+   .+ ..++++.||||++ |++|   ||+++   ++++++.+....
T Consensus       191 ~~~~~li~De~~~~~~~~~~~~-~~~~~~--~~---~~-~~~i~~~s~sK~~-~~~g---G~~~~---~~~~~~~~~~~~  256 (385)
T TIGR01825       191 RYGAVTYVDDAHGSGVMGEAGR-GTVHHF--GL---ED-KVDIQVGTLSKAI-GVVG---GYAAG---HKELIEYLKNRA  256 (385)
T ss_pred             HhCCEEEEECcccccCcCCCCC-ccHhhc--CC---Cc-CCcEEEEeccHHh-hcCC---CEEec---CHHHHHHHHHhC
Confidence            9999999999998766532111 111111  11   22 3578899999998 5555   99987   888988887653


Q ss_pred             h--c-cccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCC
Q 009517          381 S--V-NLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLP  457 (533)
Q Consensus       381 ~--~-~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~  457 (533)
                      .  . +...++..+.++.++++..           ....+..+++.++++++.+.|+++ |+++..+++.++.+. +..+
T Consensus       257 ~~~~~~~~~~~~~~~a~~~al~~~-----------~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~-~~~~  323 (385)
T TIGR01825       257 RPFLFSTAQPPAVVAALAAAVDEL-----------QRSPELMERLWDNTRFFKAGLGKL-GYDTGGSETPITPVV-IGDE  323 (385)
T ss_pred             ccccccCCCCHHHHHHHHHHHHHH-----------hcCHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCCCEEEEE-ECCH
Confidence            2  1 1234566677776666311           111235566778899999999988 888887777654432 2211


Q ss_pred             HHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCC-CCCCceEEEEec--CCcCcHHHHHHHHHHHHHH
Q 009517          458 EKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ-VPGTWHFRCTIL--PQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~-~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~  526 (533)
                      .            +...++..+++ +||.+. +..|+. ..+..+||+++.  +++++|++++++|++++++
T Consensus       324 ~------------~~~~~~~~L~~-~gi~v~-~~~~~~~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~~~~  381 (385)
T TIGR01825       324 K------------AAQEFSRRLFD-EGIFAQ-SIVFPTVPRGTARIRNIPTAEHTKDDLDQALDAYEKVGKE  381 (385)
T ss_pred             H------------HHHHHHHHHHH-CCcEEc-ccCCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence            0            13445556655 499884 455542 335568999884  8999999999999998864

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=99.97  E-value=1.2e-29  Score=260.77  Aligned_cols=315  Identities=15%  Similarity=0.183  Sum_probs=217.1

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc--C----C
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR--S----E  214 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--~----~  214 (533)
                      ++.+.+++.+++.+... ....|++. -..+|.++++++    +|    .+++++++|+++++..+++.+..  .    +
T Consensus        45 ~p~v~~a~~~~~~~~~~-~~~~~~~~-~~~~l~~~la~~----~g----~~~~~~~~sg~~a~~~a~~~~~~~~~~~~~~  114 (379)
T TIGR00707        45 HPKLVEALKEQLEKLVH-VSNLYYTE-PQEELAEKLVEH----SG----ADRVFFCNSGAEANEAALKLARKYTGDKGKE  114 (379)
T ss_pred             CHHHHHHHHHHHhhccc-cccccCCH-HHHHHHHHHHhh----CC----CCEEEEeCCcHHHHHHHHHHHHHHhhccCCC
Confidence            58899999888876322 11234322 144455555544    44    35999999999999999986621  1    3


Q ss_pred             CCeEEEcCCcCcchHHHHHHhCCeEEE----EecCCCCCCCC--CHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccC-C
Q 009517          215 NDGILCPIPQYPLYSASIALHGGTLVP----YYLDEATGWGL--ETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV-L  287 (533)
Q Consensus       215 gd~Vlv~~p~~~~~~~~~~~~g~~~~~----v~~~~~~~~~l--d~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~-~  287 (533)
                      +++|++++|+|+++...+...+.....    .++..+..+..  |++.+++.+++      ++++|++++++||+|.. +
T Consensus       115 ~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~v~~~p~~~~~g~~~~  188 (379)
T TIGR00707       115 KKKIIAFENSFHGRTMGALSATGQPKYQKGFEPLVPGFSYAPYNDIESLKKAIDD------ETAAVIVEPIQGEGGVNPA  188 (379)
T ss_pred             CCeEEEECCCcCCccHHHHHhcCChhhhccCCCCCCCceeeCCCCHHHHHHHhhh------CeeEEEEEccccCCCCccC
Confidence            699999999999988777766654321    22222111111  89999999876      78999997778888874 7


Q ss_pred             CHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEec
Q 009517          288 AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTG  367 (533)
Q Consensus       288 s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~  367 (533)
                      +.+++++|.++|+++++++|+||+|.+|.+.+.  ..++..  ..+   .++     +.+|||.+ + +|+|+||+++  
T Consensus       189 ~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~--~~~~~~--~~~---~~d-----~~t~sK~~-~-~G~riG~~~~--  252 (379)
T TIGR00707       189 SAEFLKALREICKDKDALLIFDEVQTGIGRTGK--FFAYEH--YGI---EPD-----IITLAKGL-G-GGVPIGATLA--  252 (379)
T ss_pred             CHHHHHHHHHHHHHcCCEEEEeccccCCCccch--hhhHHh--cCC---CCC-----EEEEcccc-c-CCcccEEEEE--
Confidence            999999999999999999999999998766442  111111  112   344     33789999 6 8999999998  


Q ss_pred             CCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCceEec
Q 009517          368 FSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL---EGITCNK  443 (533)
Q Consensus       368 ~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~g~~~~~  443 (533)
                       ++++++.+..... .+++.++++|.++.++|+.           .+ ...+.++++++++.+++.|+++   .++..+.
T Consensus       253 -~~~~~~~~~~~~~~~~~~~~~~~~~aa~aaL~~-----------~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  319 (379)
T TIGR00707       253 -KEEVAEAFTPGDHGSTFGGNPLACAAALAVLEV-----------IE-KERLLENVKEKGDYFKERLEELGKNYPNKEVR  319 (379)
T ss_pred             -cHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHH-----------HH-hhhHHHHHHHHHHHHHHHHHHHHhhCCCCccc
Confidence             8999988876533 5677899999999888741           11 1235566777777777777664   1232233


Q ss_pred             CCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHH
Q 009517          444 AEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLT  521 (533)
Q Consensus       444 ~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~  521 (533)
                      + .|.++|+.++.              +...+. +.|.++||.+.|+.       .+++||++.  .+++++++++++|+
T Consensus       320 ~-~g~~~~~~~~~--------------~~~~~~-~~l~~~Gv~v~~~~-------~~~lRi~~~~~~t~~~i~~~~~~l~  376 (379)
T TIGR00707       320 G-KGLMLGIELEA--------------PCKDIV-KKALEKGLLVNCAG-------PKVLRFLPPLIITKEEIDEAVSALE  376 (379)
T ss_pred             c-CceEEEEEecC--------------cHHHHH-HHHHHCCcEEeeCC-------CCEEEEECCCcCCHHHHHHHHHHHH
Confidence            3 45567755431              123333 45677899999842       238999974  78999999999998


Q ss_pred             HH
Q 009517          522 DF  523 (533)
Q Consensus       522 ~~  523 (533)
                      ++
T Consensus       377 ~~  378 (379)
T TIGR00707       377 EA  378 (379)
T ss_pred             Hh
Confidence            75

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=99.97  E-value=2.5e-29  Score=259.82  Aligned_cols=323  Identities=13%  Similarity=0.114  Sum_probs=222.8

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCC-CeEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-DGIL  219 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vl  219 (533)
                      ++.+.+++.+++.+... ....|.+..+ .+|.+.++++    ++. ..+++|++++|+++|+..+++.++ .+| ++|+
T Consensus        61 ~p~v~~ai~~~~~~~~~-~~~~~~~~~~-~~la~~l~~~----~~~-~~~~~v~~~~sgsea~~~al~~~~-~~g~~~ii  132 (398)
T PRK03244         61 HPAVVEAVTRQLATLGH-VSNLFATEPQ-IALAERLVEL----LGA-PEGGRVFFCNSGAEANEAAFKLAR-LTGRTKIV  132 (398)
T ss_pred             CHHHHHHHHHHHHhccC-ccCccCCHHH-HHHHHHHHHh----CCC-CCCCEEEEeCchHHHHHHHHHHHH-HHCCCeEE
Confidence            58899999998886432 1234655442 3455555444    442 235799999999999999999887 466 5788


Q ss_pred             EcCCcCcchHHHHHHh-CCeEEEEecCCC-CCC----CCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHH-H
Q 009517          220 CPIPQYPLYSASIALH-GGTLVPYYLDEA-TGW----GLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEEN-Q  292 (533)
Q Consensus       220 v~~p~~~~~~~~~~~~-g~~~~~v~~~~~-~~~----~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~-l  292 (533)
                      ..+++|+++....... |......+.... .++    ..|++.+++.+++      ++++|+++.++||||.++++++ +
T Consensus       133 ~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~aviiep~~~~~G~~~~~~~~l  206 (398)
T PRK03244        133 AAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPYGDVDALAAAVDD------DTAAVFLEPIQGEAGVVPPPAGYL  206 (398)
T ss_pred             EECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCCCCHHHHHHhhcC------CeEEEEEecccCCCCCcCCCHHHH
Confidence            8888999886554433 221111110000 000    1378999988854      7899999999999999886554 9


Q ss_pred             HHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHH
Q 009517          293 RAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEV  372 (533)
Q Consensus       293 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~  372 (533)
                      ++|.++|++||+++|+||+|++|.+.|.  ...+ . ..++   .+|     +.+|||++ | +|+|+||+++   ++++
T Consensus       207 ~~l~~l~~~~~~llI~DEv~~g~gr~g~--~~~~-~-~~~~---~pD-----i~t~sK~l-~-~G~~ig~~~~---~~~~  269 (398)
T PRK03244        207 AAAREITDRHGALLVLDEVQTGIGRTGA--WFAH-Q-HDGV---TPD-----VVTLAKGL-G-GGLPIGACLA---FGPA  269 (398)
T ss_pred             HHHHHHHHHcCCEEEEeccccCCcccch--HHhh-h-hhCC---CCC-----EEEEchhh-h-CCcccEEEEE---cHHH
Confidence            9999999999999999999999766542  1111 1 1122   466     45889999 5 7999999998   8888


Q ss_pred             HHHHHHhh-hccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCceEecCCceeE
Q 009517          373 REQIYKVA-SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL--EGITCNKAEGAMY  449 (533)
Q Consensus       373 ~~~l~~~~-~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~g~~~~~~~gg~~  449 (533)
                      ++.+.... ..+++.++++++++.++|+.           .+ .+...++++++++++++.|+++  +.+..+++ .|++
T Consensus       270 ~~~~~~~~~~~t~~~~~~~~aaa~a~l~~-----------~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~v~g-~g~~  336 (398)
T PRK03244        270 ADLLTPGLHGSTFGGNPVACAAALAVLDT-----------IA-SEGLLENAERLGEQLRAGIEALGHPLVDHVRG-RGLL  336 (398)
T ss_pred             HhhccCCCCcCCCCCCHHHHHHHHHHHHH-----------HH-hccHHHHHHHHHHHHHHHHHhcCCCceeeEee-ccEE
Confidence            88876543 36788999999999988741           11 1245566777788899999886  22233444 4567


Q ss_pred             EecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 009517          450 LFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~~  527 (533)
                      +|+.++.+             ....+. ..|.++||.+.|.       +.+.||+++.  .++++|++++++|++++++.
T Consensus       337 ~~i~~~~~-------------~~~~~~-~~l~~~Gv~~~~~-------~~~~iR~~p~~~~t~~~i~~~~~~l~~~l~~~  395 (398)
T PRK03244        337 LGIVLTAP-------------VAKAVE-AAAREAGFLVNAV-------APDVIRLAPPLIITDAQVDAFVAALPAILDAA  395 (398)
T ss_pred             EEEEEecc-------------HHHHHH-HHHHHCCeEEeec-------CCCEEEEECCCcCCHHHHHHHHHHHHHHHHhc
Confidence            77655311             122333 4456689999873       1238999985  78899999999999999865


Q ss_pred             H
Q 009517          528 M  528 (533)
Q Consensus       528 ~  528 (533)
                      .
T Consensus       396 ~  396 (398)
T PRK03244        396 A  396 (398)
T ss_pred             c
Confidence            4

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.97  E-value=1e-29  Score=248.01  Aligned_cols=362  Identities=15%  Similarity=0.121  Sum_probs=256.4

Q ss_pred             cccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHH
Q 009517           70 YAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAW  149 (533)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~  149 (533)
                      |.+....+.+.++...|+.+|++      +|||..|.--.                      ..+++    +|.+++++.
T Consensus        21 Y~~~~~~~~~G~G~~v~D~~G~~------YlDf~~Giav~----------------------~lGH~----hP~iv~al~   68 (404)
T COG4992          21 YGRLPVVIVRGEGAYVWDQQGRE------YLDFAAGIAVN----------------------NLGHC----HPALVEALK   68 (404)
T ss_pred             cCcCceeEEeccccEEECCCCCE------eeeeccceeee----------------------ccCCC----CHHHHHHHH
Confidence            44444467777888888888888      66665443221                      11222    689999999


Q ss_pred             HHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCC----CCeEEEcCCcC
Q 009517          150 QILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSE----NDGILCPIPQY  225 (533)
Q Consensus       150 ~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~----gd~Vlv~~p~~  225 (533)
                      +++.+....++..|.      +.+.++++.+.+..+   ..++|+++|+++||++.+++..++..    ..+|+....+|
T Consensus        69 ~Q~~kl~h~sn~~~~------~~~~~la~~L~~~s~---~~d~vff~NSGaEA~EaAiKlARk~~~~~~k~~Iia~~nsF  139 (404)
T COG4992          69 EQAEKLWHVSNLFYN------EPQAELAEKLVELSP---FADRVFFCNSGAEANEAALKLARKYTGDPEKSKIIAFENSF  139 (404)
T ss_pred             HHHHHhhhcccccCC------hHHHHHHHHHHhhCc---cccEEEEcCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCc
Confidence            998875442333333      334445555554311   37899999999999999999986211    24799999999


Q ss_pred             cchHHHHHHhCCeEEEE----ecCCCCCCC----CCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCC-CHHHHHHHH
Q 009517          226 PLYSASIALHGGTLVPY----YLDEATGWG----LETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVL-AEENQRAIV  296 (533)
Q Consensus       226 ~~~~~~~~~~g~~~~~v----~~~~~~~~~----ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~-s~~~l~~i~  296 (533)
                      ++-......++.+..+.    |+.+  +|.    =|+++++++|++      +|.+|+++..+...|+++ +++.++++.
T Consensus       140 HGRT~galS~t~~~ky~~~F~Pl~~--g~~~vpfnDi~al~~ai~~------~taAvivEPIQGEgGV~~~~~~fl~~lr  211 (404)
T COG4992         140 HGRTLGALSATGQPKYRKGFGPLLP--GFRHVPFNDIEALEAAIDE------DTAAVIVEPIQGEGGVIPAPPEFLKALR  211 (404)
T ss_pred             CCccceeeeccCChhhccCCCCCCC--CceecCCCCHHHHHHHhcc------CeEEEEEecccCCCCCCCCCHHHHHHHH
Confidence            98665444444332111    1111  111    189999999998      899999999999999854 556699999


Q ss_pred             HHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHH
Q 009517          297 DFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQI  376 (533)
Q Consensus       297 ~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l  376 (533)
                      ++|++||+++|.||+++++..+|.       -++.+..++.||     |.++.|.++  .|++||++++   ...+.+.+
T Consensus       212 ~lCd~~g~LLI~DEVQtG~GRTGk-------~fA~e~~gV~PD-----I~tlaK~Lg--GG~PigA~la---~~~~~~~~  274 (404)
T COG4992         212 ELCDEHGALLILDEVQTGLGRTGK-------LFAYEHYGVEPD-----ILTLAKALG--GGFPIGAMLA---TEEIASAF  274 (404)
T ss_pred             HHHHHhCeEEEEeccccCCCccch-------HHHHHHhCCCCC-----EEEeecccc--CCccceeeEE---chhhhhcC
Confidence            999999999999999999988875       334444455799     678899995  4899999998   66667666


Q ss_pred             HHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCceEecCCceeEEe
Q 009517          377 YKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL----EGITCNKAEGAMYLF  451 (533)
Q Consensus       377 ~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~gg~~~~  451 (533)
                      ....+ +|+++|+++++++.++|+..           . .+.+.++.+++.+++.+.|+++    |-++-++..|-|.- 
T Consensus       275 ~~G~HgSTfGGNpLacAv~~a~l~~l-----------~-~e~ll~~v~~~g~~~~~~L~~l~~~~~~v~~vRG~GLmiG-  341 (404)
T COG4992         275 TPGDHGSTFGGNPLACAVALAVLEVL-----------L-EEGLLENVREKGEYLLQRLRELKRRYPLVKEVRGRGLMIG-  341 (404)
T ss_pred             CCCcccCCCCcCHHHHHHHHHHHHHH-----------c-chhHHHHHHHHHHHHHHHHHHHhhcCCceeeeecceeEEE-
Confidence            66555 88999999999999988521           1 2456667777888888888776    33566777775433 


Q ss_pred             cccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHHHHHHH
Q 009517          452 PRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~~~~  529 (533)
                        +.+...         . ....++ +.+.++||++.+       .+.+.+|+.+.  +++++|++++++|+++++.+..
T Consensus       342 --iel~~~---------~-~a~~~~-~~~~~~gvL~~~-------a~~~ViR~~PpL~i~~eei~~~~~~l~~~l~~~~~  401 (404)
T COG4992         342 --IELKEP---------Y-RARDIV-RALREEGVLVLP-------AGPNVIRFLPPLVITEEEIDEALDALERALAAASA  401 (404)
T ss_pred             --EEecCc---------c-cHHHHH-HHHHHCCeEEec-------CCCCeEEecCCccCCHHHHHHHHHHHHHHHHHhhh
Confidence              332211         0 123333 556778999995       55559999995  8999999999999999998764


Q ss_pred             H
Q 009517          530 K  530 (533)
Q Consensus       530 ~  530 (533)
                      .
T Consensus       402 ~  402 (404)
T COG4992         402 R  402 (404)
T ss_pred             c
Confidence            3

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=99.97  E-value=3.8e-28  Score=250.27  Aligned_cols=326  Identities=14%  Similarity=0.119  Sum_probs=222.0

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      |+.+++++.+++..... ....|....|..++++.+++.+.+.++    .++.++++++++++..+++.+. ++||+|++
T Consensus        55 ~~~v~~a~~~~~~~~~~-~~~~~~~~~g~~~~~~~l~~~la~~~~----~~~~i~~~~g~~~~~~~l~~~~-~~gd~V~~  128 (385)
T PRK05958         55 HPRLIAAAQQAARRYGA-GSGGSRLVTGNSPAHEALEEELAEWFG----AERALLFSSGYAANLAVLTALA-GKGDLIVS  128 (385)
T ss_pred             CHHHHHHHHHHHHhcCC-CCCCcCcccCCcHHHHHHHHHHHHHhC----CCcEEEECcHHHHHHHHHHHhC-CCCCEEEE
Confidence            68899999888875321 122334444444445555555544444    2344555556677777778877 89999999


Q ss_pred             cCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHH
Q 009517          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (533)
Q Consensus       221 ~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~  300 (533)
                      +.|+|+.+...+...|.+++.++.       .|++.+++.+++.   .++++++++.+++||||...+   +++|+++|+
T Consensus       129 ~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~i~~~---~~~~~lvi~~~~~~~~G~~~~---l~~i~~ia~  195 (385)
T PRK05958        129 DKLNHASLIDGARLSRARVRRYPH-------NDVDALEALLAKW---RAGRALIVTESVFSMDGDLAP---LAELVALAR  195 (385)
T ss_pred             eCccCHHHHHHHHhcCCceEEeCC-------CCHHHHHHHHHhc---cCCCeEEEEEecccCCCCcCC---HHHHHHHHH
Confidence            999999999999989999888764       3789999988752   113555666688999998877   899999999


Q ss_pred             HcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhh
Q 009517          301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA  380 (533)
Q Consensus       301 ~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~  380 (533)
                      +||+++|+||+|..+.+.....  .... ...+   ....++|++.||||++ |++|   ||+++   ++++++.+.+..
T Consensus       196 ~~~~~li~De~~~~g~~~~~g~--~~~~-~~~~---~~~~~~i~~~s~sK~~-~~~G---g~~~~---~~~~~~~~~~~~  262 (385)
T PRK05958        196 RHGAWLLVDEAHGTGVLGPQGR--GLAA-EAGL---AGEPDVILVGTLGKAL-GSSG---AAVLG---SETLIDYLINRA  262 (385)
T ss_pred             HhCCEEEEECcccccccCCCCC--chHH-hhCC---CCCCceEEEEechhhc-ccCC---cEEEc---CHHHHHHHHHhC
Confidence            9999999999997654532111  1111 1112   2233579999999998 6666   89887   888888775443


Q ss_pred             h---ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCC
Q 009517          381 S---VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLP  457 (533)
Q Consensus       381 ~---~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~  457 (533)
                      .   .+.++++..+.++.++|+.           .+..+.+.+++.++++++.+.|+++ |++++.+.++++ |+.++  
T Consensus       263 ~~~~~~~~~~~~~~aa~~aal~~-----------~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~-~~~~~--  327 (385)
T PRK05958        263 RPFIFTTALPPAQAAAARAALRI-----------LRREPERRERLAALIARLRAGLRAL-GFQLMDSQSAIQ-PLIVG--  327 (385)
T ss_pred             ccceecCCCCHHHHHHHHHHHHH-----------HhcCHHHHHHHHHHHHHHHHHHHHc-CCCcCCCCCCEE-EEEeC--
Confidence            2   2234556666666566531           1111456778899999999999987 788777777654 54443  


Q ss_pred             HHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHH
Q 009517          458 EKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l  524 (533)
                      ...          +...++..+ .++||.+.++..+....+.++|||++.  .+++++++++++|++++
T Consensus       328 ~~~----------~~~~~~~~l-~~~gI~v~~~~~~~~~~~~~~lRis~~~~~~~~~i~~~l~~l~~~~  385 (385)
T PRK05958        328 DNE----------RALALAAAL-QEQGFWVGAIRPPTVPAGTSRLRITLTAAHTEADIDRLLEALAEAL  385 (385)
T ss_pred             CHH----------HHHHHHHHH-HHCCceEecccCCCCCCCCceEEEEecCCCCHHHHHHHHHHHHhcC
Confidence            110          133445454 567999998655432334569999996  78999999999998753

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=99.97  E-value=4.3e-28  Score=250.73  Aligned_cols=324  Identities=17%  Similarity=0.155  Sum_probs=228.4

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCC-------cccHHHHHHHHHHHHhhcCCCC-CCCCEEEcCChHHHHHHHHHHhc-
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHS-------QGIKGLRDTIAAGIEARDGFPA-DPNDIFLTDGASPAVHMMMQLLI-  211 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~-------~G~~~lr~aia~~~~~~~g~~~-~~~~i~~t~G~~~al~~~~~~l~-  211 (533)
                      |..+++++.+.+.....  ...+...       ..+.++|++++++++      . ++++|++|+|+++++..++..+. 
T Consensus        29 p~~v~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~r~~la~~~g------~~~~~~i~~t~g~t~~l~~~~~~~~~  100 (398)
T TIGR03392        29 PQAVIDATQQFYRLSSG--TVHRSQHQQAQSLTARYELARQQVARFLN------APDAENIVWTRGTTESINLVAQSYAR  100 (398)
T ss_pred             CHHHHHHHHHHHHhcCC--CCCCcccHHHHHHHHHHHHHHHHHHHHhC------CCCCCeEEEeCChHHHHHHHHHHhhh
Confidence            78899998887754322  1122221       235678888888875      3 46899999999999999999872 


Q ss_pred             --cCCCCeEEEcCCcCcc----hHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCcc
Q 009517          212 --RSENDGILCPIPQYPL----YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ  285 (533)
Q Consensus       212 --~~~gd~Vlv~~p~~~~----~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~  285 (533)
                        .++||+|++++|.|+.    +...++..|++++.++++.  ++.+|++.+++++++      ++++|++++|+||||.
T Consensus       101 ~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~~~~~l~~~i~~------~t~lv~i~~~~n~tG~  172 (398)
T TIGR03392       101 PRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGA--DLLPDIRQLPELLTP------RTRILALGQMSNVTGG  172 (398)
T ss_pred             ccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecCC--CCCcCHHHHHHHhcc------CceEEEEECccccccc
Confidence              2689999999999876    4456677899999999864  357899999999976      7999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEE
Q 009517          286 VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV  365 (533)
Q Consensus       286 ~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~  365 (533)
                      +.+   +++|+++|+++|+++|+|++|....+    + .++    ..+   ..|   +++.|++|.+ |++|  +||+++
T Consensus       173 ~~~---~~~i~~~~~~~~~~~ivD~a~~~~~~----~-~~~----~~~---~~d---~~~~s~~K~~-gp~G--~G~l~~  231 (398)
T TIGR03392       173 CPD---LARAITLAHQYGAVVVVDGAQGVVHG----P-PDV----QAL---DID---FYAFSGHKLY-GPTG--IGVLYG  231 (398)
T ss_pred             cCC---HHHHHHHHHHcCCEEEEEhhhhcCCC----C-CCh----hhc---CCC---EEEEeccccc-CCCc--eEEEEE
Confidence            998   88899999999999999999965322    1 121    111   233   6678888977 7666  899987


Q ss_pred             ecCCHHHHHHHHHhhh----------------------ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHH
Q 009517          366 TGFSAEVREQIYKVAS----------------------VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLA  423 (533)
Q Consensus       366 ~~~~~~~~~~l~~~~~----------------------~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~  423 (533)
                         ++++++.+.....                      ...+++..+..++.++++-       +..  ...+.+.++..
T Consensus       232 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~-------l~~--~g~~~i~~~~~  299 (398)
T TIGR03392       232 ---KTELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEW-------LTD--IDIAAAEAWSV  299 (398)
T ss_pred             ---cHHHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHH-------HHH--hCHHHHHHHHH
Confidence               8888776643210                      0123444455555555420       000  11345667778


Q ss_pred             HHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCC-----CC
Q 009517          424 RRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQV-----PG  498 (533)
Q Consensus       424 ~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~-----~g  498 (533)
                      +.++++.+.|++++|+....+..+..+++.++  .          . +...+. ..|.++||.+.+|..+...     ..
T Consensus       300 ~l~~~l~~~l~~l~g~~~~~~~~~~i~~~~~~--~----------~-~~~~l~-~~L~~~gI~v~~g~~~~~~~~~~~g~  365 (398)
T TIGR03392       300 SLADLAEERLAQLPGFRSFRCPGSSLLAFDFA--G----------V-HHSDLA-ALLAESGIALRAGQHCAQPLMAALGV  365 (398)
T ss_pred             HHHHHHHHHHhcCCCeEEeCCCCCcEEEEEeC--C----------c-CHHHHH-HHHHhCCEEEecCccchHHHHHHhCC
Confidence            88889999999888888765433334443332  1          1 123333 4567789999999866311     11


Q ss_pred             CceEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 009517          499 TWHFRCTIL--PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       499 ~~~iRis~~--~~~e~i~~~~~~l~~~l~~~  527 (533)
                      .++||+|+.  .+++|++++++.|+++++++
T Consensus       366 ~~~iRvS~~~~~t~~ei~~l~~~l~~~~~~~  396 (398)
T TIGR03392       366 SGTLRASFAPYNTQQDVDALVDAVGAALELL  396 (398)
T ss_pred             CCEEEEEeeccCCHHHHHHHHHHHHHHHHHh
Confidence            248999996  88999999999999887753

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=99.97  E-value=4.9e-28  Score=250.58  Aligned_cols=325  Identities=18%  Similarity=0.179  Sum_probs=229.7

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCC------CcccHHHHHHHHHHHHhhcCCCC-CCCCEEEcCChHHHHHHHHHHhc--
Q 009517          141 SADSIERAWQILDQIPGRATGAYSH------SQGIKGLRDTIAAGIEARDGFPA-DPNDIFLTDGASPAVHMMMQLLI--  211 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~------~~G~~~lr~aia~~~~~~~g~~~-~~~~i~~t~G~~~al~~~~~~l~--  211 (533)
                      |..+++++.+.+...... ......      ...+.++|++++++++      . ++++|++|+|+++++..+++.+.  
T Consensus        32 ~~~v~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r~~la~~~g------~~~~~~i~~~~~~t~~i~~~~~~~~~~  104 (401)
T PRK10874         32 PQAVIEATQQFYSLSAGN-VHRSQFAAAQRLTARYEAAREQVAQLLN------APDAKNIVWTRGTTESINLVAQSYARP  104 (401)
T ss_pred             CHHHHHHHHHHHHhccCC-CCCcccHHHHHHHHHHHHHHHHHHHHcC------CCCCCEEEEECCHHHHHHHHHHHhhhc
Confidence            788999888887653210 111111      1225678888888875      4 67899999999999999999973  


Q ss_pred             -cCCCCeEEEcCCcCcc----hHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccC
Q 009517          212 -RSENDGILCPIPQYPL----YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV  286 (533)
Q Consensus       212 -~~~gd~Vlv~~p~~~~----~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~  286 (533)
                       .++||+|++++|.|+.    +...++..|++++.++.+.  ++.+|++++++.+++      ++++|++++|+||||.+
T Consensus       105 ~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~------~t~lv~i~~~~n~tG~~  176 (401)
T PRK10874        105 RLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGA--DRLPDVDLLPELITP------RTRILALGQMSNVTGGC  176 (401)
T ss_pred             cCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecCC--CCcCCHHHHHHhcCc------CcEEEEEeCCcccccCc
Confidence             2589999999999865    4556677899999999864  467899999999976      79999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEe
Q 009517          287 LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVT  366 (533)
Q Consensus       287 ~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~  366 (533)
                      ++   +++|+++|+++|+++|+|++|....+    + .++    ..+   ..|   +++.|++|.+ |++|  +||+++ 
T Consensus       177 ~~---~~~i~~l~~~~g~~~ivD~a~~~g~~----~-~~~----~~~---~~d---~~~~s~~K~~-gp~G--~G~l~~-  234 (401)
T PRK10874        177 PD---LARAITLAHQAGMVVMVDGAQGAVHF----P-ADV----QAL---DID---FYAFSGHKLY-GPTG--IGVLYG-  234 (401)
T ss_pred             CC---HHHHHHHHHHcCCEEEEECCcccccc----c-CCc----hhc---CCC---EEEEeccccc-CCCc--cEEEEE-
Confidence            98   88999999999999999999964222    1 111    111   233   6788999976 7777  488887 


Q ss_pred             cCCHHHHHHHHHhhh----------------------ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHH
Q 009517          367 GFSAEVREQIYKVAS----------------------VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLAR  424 (533)
Q Consensus       367 ~~~~~~~~~l~~~~~----------------------~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (533)
                        ++++++.+.....                      ...+++..++.++..+++.       +..  .....+.++.++
T Consensus       235 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~-------l~~--~g~~~~~~~~~~  303 (401)
T PRK10874        235 --KSELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEW-------LAD--IDINQAESWSRS  303 (401)
T ss_pred             --chHHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHH-------HHH--hCHHHHHHHHHH
Confidence              8888776643210                      1124455566666665531       100  113445677778


Q ss_pred             HHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCC-----CCC
Q 009517          425 RAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQV-----PGT  499 (533)
Q Consensus       425 ~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~-----~g~  499 (533)
                      .++++.+.|+++||+....+..+.++++.++  .          . +...+. ..|.++||.+.+|..+...     ...
T Consensus       304 l~~~l~~~l~~~~g~~~~~~~~~~i~~~~~~--~----------~-~~~~~~-~~L~~~gI~v~~g~~~~~~~~~~~g~~  369 (401)
T PRK10874        304 LATLAEDALAKLPGFRSFRCQDSSLLAFDFA--G----------V-HHSDLV-TLLAEYGIALRAGQHCAQPLLAALGVT  369 (401)
T ss_pred             HHHHHHHHHhcCCCEEEeCCCCCcEEEEEEC--C----------c-CHHHHH-HHHHHCCcEEeccccchHHHHHHhCCC
Confidence            8899999999988988775444434443333  1          1 123333 5667789999998876411     112


Q ss_pred             ceEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 009517          500 WHFRCTIL--PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       500 ~~iRis~~--~~~e~i~~~~~~l~~~l~~~  527 (533)
                      ++||||+.  .++++++.+++.|+++++.+
T Consensus       370 ~~iRiS~~~~nt~edid~ll~al~~~~~~~  399 (401)
T PRK10874        370 GTLRASFAPYNTQSDVDALVNAVDRALELL  399 (401)
T ss_pred             CEEEEEecccCCHHHHHHHHHHHHHHHHHh
Confidence            48999996  78999999999999887753

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=99.97  E-value=1.3e-28  Score=254.01  Aligned_cols=343  Identities=12%  Similarity=0.114  Sum_probs=232.9

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      +..++++...++.+|++      ++|+..|....                      ..+++    ++++++++.+++.+.
T Consensus        25 ~~~~~~G~~l~d~~G~~------~lD~~~g~~~~----------------------~lGh~----~p~v~~ai~~~~~~~   72 (396)
T PRK04073         25 VISEAEGVWVKDPEGNR------YMDMLSAYSAV----------------------NQGHR----HPKIIQALKDQADKV   72 (396)
T ss_pred             eEEeeeecEEEECCCCE------EEEcCCCHHhc----------------------cCCCC----CHHHHHHHHHHHhhc
Confidence            45566666666667777      78876554321                      11111    689999999998864


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC--------CC-CeEEEcCCcCc
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS--------EN-DGILCPIPQYP  226 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~--------~g-d~Vlv~~p~~~  226 (533)
                      ..  ...+.......+|.+.++++    .+    .+.++++++|++|++.+++.++..        +| ++|+....+|+
T Consensus        73 ~~--~~~~~~~~~~~~l~~~l~~~----~~----~~~~~~~~SGseA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~H  142 (396)
T PRK04073         73 TL--TSRAFHSDQLGPWYEKVAKL----TG----KDMVLPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFH  142 (396)
T ss_pred             cc--cccccCCHHHHHHHHHHHhc----CC----CCeEEEcCChHHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcC
Confidence            32  11111222233444444443    22    468999999999999999987421        34 67898888888


Q ss_pred             chHHHH-HHhCCe------------EEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCH-HHH
Q 009517          227 LYSASI-ALHGGT------------LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAE-ENQ  292 (533)
Q Consensus       227 ~~~~~~-~~~g~~------------~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~-~~l  292 (533)
                      +..... ...+..            +..++.       .|++.+++.+++      ++++|++++++||||.++++ +.+
T Consensus       143 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~i~~------~~~~viiep~~~~~G~~~~~~~~l  209 (396)
T PRK04073        143 GRTMAAVSLSSEEEYKRGFGPMLPGIKKIPY-------GDLEALKAAITP------NTAAFLVEPIQGEAGINIPPEGFL  209 (396)
T ss_pred             CCCHHHHhhcCCcccccCCCCCCCCceEeCC-------CCHHHHHHhccc------CeEEEEEcCccCCCCCccCCHHHH
Confidence            865333 222311            111111       278999988865      78899999999999998775 469


Q ss_pred             HHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHH
Q 009517          293 RAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEV  372 (533)
Q Consensus       293 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~  372 (533)
                      ++|.++|++||+++|+||+|.++.++|.  ...     .+..+..+|     +.+|||.+ |++|+|+||+++   ++++
T Consensus       210 ~~l~~l~~~~g~lli~DEv~~g~g~~g~--~~~-----~~~~~~~pd-----i~~~sK~l-g~gg~~ig~~~~---~~~i  273 (396)
T PRK04073        210 KAARELCKEENVLFIADEIQTGLGRTGK--LFA-----CDWDNVTPD-----MYILGKAL-GGGVFPISCVAA---NRDI  273 (396)
T ss_pred             HHHHHHHHHcCCEEEEecchhCCCcCcH--HHH-----hhhcCCCCC-----EEEecccc-cCCCCcceEEEE---cHHH
Confidence            9999999999999999999999766542  111     111111455     45689999 777899999998   9999


Q ss_pred             HHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCceEecCCceeE
Q 009517          373 REQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL--EGITCNKAEGAMY  449 (533)
Q Consensus       373 ~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~g~~~~~~~gg~~  449 (533)
                      ++.+..... .++++++++++++.++|+.           .++ +.+.++.+++++++.+.|+++  +++..+++.|.| 
T Consensus       274 ~~~~~~~~~~~t~~~~~~~~aaa~aaL~~-----------~~~-~~l~~~~~~~~~~l~~~L~~l~~~~i~~~~~~g~~-  340 (396)
T PRK04073        274 LGVFTPGSHGSTFGGNPLACAVSIAALEV-----------LEE-EKLPERSLELGEYFKEQLKEIDNPMIKEVRGRGLF-  340 (396)
T ss_pred             HhhhcCCCCCCCCCCCHHHHHHHHHHHHH-----------HHh-cCHHHHHHHHHHHHHHHHHhhcCCcccceecceEE-
Confidence            988865433 6788899999999888841           111 234466677788888988876  345556677654 


Q ss_pred             EecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEe--cCCcCcHHHHHHHHHHHH
Q 009517          450 LFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTI--LPQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~--~~~~e~i~~~~~~l~~~l  524 (533)
                      +++++.  .            ....++.+ |.++||.+.+.       +.++|||++  ..++++|++++++|++++
T Consensus       341 ~~~~~~--~------------~~~~~~~~-l~~~Gv~~~~~-------~~~~iRi~p~l~~t~e~i~~~~~~l~~~l  395 (396)
T PRK04073        341 IGVELN--E------------PARPYCEA-LKEEGLLCKET-------HETVIRFAPPLVITKEELDWAFEKIKAVL  395 (396)
T ss_pred             EEEEec--c------------hHHHHHHH-HHHCCeEEecC-------CCCEEEEECCcccCHHHHHHHHHHHHHHh
Confidence            555443  1            13344444 55689999862       223899996  489999999999998875

>PRK10534 L-threonine aldolase; Provisional

Probab=99.96  E-value=3.4e-28  Score=245.46  Aligned_cols=312  Identities=15%  Similarity=0.123  Sum_probs=213.7

Q ss_pred             CCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEE
Q 009517          140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGIL  219 (533)
Q Consensus       140 ~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vl  219 (533)
                      +++.+++++.+....     ...|.|..+..+|++++|++++        .+.+++++|+++++..++.+++ .+||+|+
T Consensus        12 p~~~~~~a~~~~~~~-----~~~Y~~~~~~~~L~~~la~~~g--------~~~~~v~~~g~~a~~~~l~~~~-~~gd~vi   77 (333)
T PRK10534         12 PSRAMLEAMMAAPVG-----DDVYGDDPTVNALQDYAAELSG--------KEAALFLPTGTQANLVALLSHC-ERGEEYI   77 (333)
T ss_pred             CCHHHHHHHHhccCC-----CcccCCCHHHHHHHHHHHHHhC--------CCeEEEeCchHHHHHHHHHHhc-CCCCeeE
Confidence            477888887654432     4578777779999999999974        2455788888888888888887 7999999


Q ss_pred             EcCCcCcc-hHHH-HHHhC-CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHH
Q 009517          220 CPIPQYPL-YSAS-IALHG-GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIV  296 (533)
Q Consensus       220 v~~p~~~~-~~~~-~~~~g-~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~  296 (533)
                      ++.|+|.. |... ....| ++++.++.+  .+|.+|+++|++++++......++++|+++||+  ||.+++.+++++|+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~--~G~v~~~~~l~~i~  153 (333)
T PRK10534         78 VGQAAHNYLYEAGGAAVLGSIQPQPIDAA--ADGTLPLDKVAAKIKPDDIHFARTRLLSLENTH--NGKVLPREYLKQAW  153 (333)
T ss_pred             EechhhhhHhcCCchHHhcCceEEeecCC--CCCCCCHHHHHHhhcccCcCcccceEEEEecCC--CCeecCHHHHHHHH
Confidence            99888753 4321 23444 677777765  368999999999886411111147899999766  59999999999999


Q ss_pred             HHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeE-EEEEecCCHHHHHH
Q 009517          297 DFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGG-YMEVTGFSAEVREQ  375 (533)
Q Consensus       297 ~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG-~v~~~~~~~~~~~~  375 (533)
                      ++|++|++++|+||+|........  ..+...+ ..    ..+ .+  +.||||.+ |+   ++| |+++   ++++++.
T Consensus       154 ~~~~~~~~~lvvDEA~~~~~~~~~--~~~~~~~-~~----~~~-~~--~~s~SK~~-~~---~~G~~~~~---~~~~i~~  216 (333)
T PRK10534        154 EFTRERNLALHVDGARIFNAVVAY--GCELKEI-TQ----YCD-SF--TICLSKGL-GT---PVGSLLVG---NRDYIKR  216 (333)
T ss_pred             HHHHHcCCeEEeeHHHHHHHHHHc--CCCHHHH-Hh----cCC-EE--EEEeEcCC-CC---cccceEEc---CHHHHHH
Confidence            999999999999999862111000  0112122 11    123 22  34899987 54   478 5766   9999999


Q ss_pred             HHHhhhcc-c--cCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEec
Q 009517          376 IYKVASVN-L--CSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFP  452 (533)
Q Consensus       376 l~~~~~~~-~--~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~  452 (533)
                      +.+....+ .  ..+.+.+.++...|++          .    ....++..+.++++.+.|+++ |+.+.+| +++|+|+
T Consensus       217 ~~~~~~~~~~~~~~~~~~~a~~~~~l~~----------~----~~~~~~~~~~r~~l~~~L~~~-g~~~~~~-~~nfv~~  280 (333)
T PRK10534        217 ARRWRKMTGGGMRQAGILAAAGLYALKH----------N----VARLQEDHDNAAWLAEQLREA-GADVMRQ-DTNMLFV  280 (333)
T ss_pred             HHHHHHHhCCchhhHHHHHHHHHHHHHh----------h----HHHHHHHHHHHHHHHHHHHhC-CCccCCC-CceEEEE
Confidence            98776522 1  2233455555555421          1    122223445678999999998 9988877 4778887


Q ss_pred             ccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHHH
Q 009517          453 RIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~  525 (533)
                      +++. .            .... +.++|.++||.++||.         ++|++..  ++.+++++++++|++++.
T Consensus       281 ~~~~-~------------~~~~-~~~~l~~~gi~v~~~~---------~~rl~~~~r~t~e~~~~~~~~l~~~~~  332 (333)
T PRK10534        281 RVGE-E------------QAAA-LGEYMRERNVLINASP---------IVRLVTHLDVSREQLAEVVAHWRAFLA  332 (333)
T ss_pred             ECCc-h------------hHHH-HHHHHHHcCeeecCCc---------eEEEEEEeCCCHHHHHHHHHHHHHHhc
Confidence            6541 0            1233 3477888999999852         5788774  889999999999987764

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=99.96  E-value=3.1e-27  Score=240.20  Aligned_cols=323  Identities=17%  Similarity=0.186  Sum_probs=218.4

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCccc----HHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCC
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGI----KGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND  216 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~----~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd  216 (533)
                      |+++++++.+.+.+... ....|....|.    .++++++++++    |.    +.+++++++++++..+++.++ ++||
T Consensus        17 ~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~la~~~----~~----~~~iv~~sg~~a~~~~~~~~~-~~gd   86 (349)
T cd06454          17 HPEVIEAAKEALDKYGV-GAGGSRLISGTSDLHEELEEELAEFH----GK----EAALVFSSGYAANDGVLSTLA-GKGD   86 (349)
T ss_pred             CHHHHHHHHHHHHHhCC-CCCCcCeecCCchHHHHHHHHHHHHh----CC----CCEEEeccHHHHHHHHHHHhc-CCCC
Confidence            68899999998875321 12233333333    45555555554    42    245666666788888888887 7999


Q ss_pred             eEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHH
Q 009517          217 GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIV  296 (533)
Q Consensus       217 ~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~  296 (533)
                      +|+++.|+|..+...+...|++++.++       .+|++.+++.+++.. ...++++|++++++||||...+   +++|+
T Consensus        87 ~Vl~~~~~~~~~~~~~~~~g~~~~~~~-------~~~~~~le~~i~~~~-~~~~~~~v~~~~~~~~tG~~~~---~~~i~  155 (349)
T cd06454          87 LIISDSLNHASIIDGIRLSGAKKRIFK-------HNDMEDLEKLLREAR-RPYGKKLIVTEGVYSMDGDIAP---LPELV  155 (349)
T ss_pred             EEEEehhhhHHHHHHHHHcCCceEEec-------CCCHHHHHHHHHHhh-ccCCCeEEEEeccccCCCCccC---HHHHH
Confidence            999999999999888899999988775       247888999887631 0125778888899999999877   89999


Q ss_pred             HHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHH
Q 009517          297 DFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQI  376 (533)
Q Consensus       297 ~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l  376 (533)
                      ++|+++|+++|+|++|....+.....  .+..+ . .   .....++++.|+||++ +++|   ||++.   ++++++.+
T Consensus       156 ~~~~~~~~~livD~a~~~g~~~~~~~--~~~~~-~-~---~~~~~~i~~~s~sK~~-~~~g---G~i~~---~~~~~~~~  221 (349)
T cd06454         156 DLAKKYGAILFVDEAHSVGVYGPHGR--GVEEF-G-G---LTDDVDIIMGTLGKAF-GAVG---GYIAG---SKELIDYL  221 (349)
T ss_pred             HHHHHcCCEEEEEccccccccCCCCC--Chhhh-c-c---ccccCcEEEeechhhh-cccC---CEEEC---CHHHHHHH
Confidence            99999999999999997433321111  11011 1 0   1233468899999998 5444   89887   88888877


Q ss_pred             HHhhh---ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecc
Q 009517          377 YKVAS---VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPR  453 (533)
Q Consensus       377 ~~~~~---~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~  453 (533)
                      .....   .+...++..+.++.+.|+.           ..+.+.++++++++++.+.+.|.++ |+.+..+.++++.+..
T Consensus       222 ~~~~~~~~~~~~~~~~~~~a~~~~l~~-----------~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~~~~~~  289 (349)
T cd06454         222 RSYARGFIFSTSLPPAVAAAALAALEV-----------LQGGPERRERLQENVRYLRRGLKEL-GFPVGGSPSHIIPPLI  289 (349)
T ss_pred             HHhchhhhccCCCCHHHHHHHHHHHHH-----------HhcCHHHHHHHHHHHHHHHHHHHhc-CCcccCCCCCcEEEEe
Confidence            65432   1234556666666666531           1113556788899999999999987 8777766555544432


Q ss_pred             cCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHH
Q 009517          454 IQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDF  523 (533)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~  523 (533)
                      +..+.            +...+...+ .++||.+.++.......+.++|||++.  .+++++++++++|+++
T Consensus       290 ~~~~~------------~~~~~~~~L-~~~gI~~~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  348 (349)
T cd06454         290 GDDPA------------KAVAFSDAL-LERGIYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEV  348 (349)
T ss_pred             CCChH------------HHHHHHHHH-HhCCceEEEecCCccCCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence            21111            123444454 456999998643221223459999996  6899999999999764

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=99.96  E-value=1.3e-28  Score=256.28  Aligned_cols=368  Identities=14%  Similarity=0.093  Sum_probs=242.4

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      ++.++++...++.||++      ++|+..|.+..                      ..+++    ++.+++++.+++.+.
T Consensus        33 ~~~~~~G~~l~d~dG~~------ylD~~~g~~~~----------------------~lGh~----~p~v~~ai~~q~~~~   80 (423)
T TIGR00713        33 FVARGKGAYLYDVDGNE------YIDYVLSWGPL----------------------ILGHA----HPRVVEAVKEALERG   80 (423)
T ss_pred             eEEeccCCEEEeCCCCE------EEEcccccccc----------------------ccCCC----CHHHHHHHHHHHHhC
Confidence            55667777777777777      88888776553                      11111    799999999999872


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc-CCCCeEEEcCCcCcchHHHHHH
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-SENDGILCPIPQYPLYSASIAL  234 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~Vlv~~p~~~~~~~~~~~  234 (533)
                          ...+.+..+..+|++++++++..       .++|++++|+++|++.+++.++. ...++|+...++|+++...+..
T Consensus        81 ----~~~~~~~~~~~~lae~l~~~~~~-------~~~v~~~~sGseA~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~  149 (423)
T TIGR00713        81 ----TSYGAPTEAEILLAKEIISRVPS-------VEMVRFVNSGTEATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLV  149 (423)
T ss_pred             ----CcCCCCCHHHHHHHHHHHHhCCc-------ccEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhc
Confidence                22233566788999999988631       36899999999999999997652 1358999999999998654433


Q ss_pred             h---CCeEEEEecCCC-------CCC---CCCHHHHHHHHHHHHhcCCCeeEEEEe-CCCCCCccCCC-HHHHHHHHHHH
Q 009517          235 H---GGTLVPYYLDEA-------TGW---GLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLA-EENQRAIVDFC  299 (533)
Q Consensus       235 ~---g~~~~~v~~~~~-------~~~---~ld~~~l~~~i~~~~~~g~~~~~iil~-~p~NPtG~~~s-~~~l~~i~~l~  299 (533)
                      .   +......+..+.       ..+   .-|++++++.++..   +.++++|+++ .|+| +|.+++ ++.+++|.++|
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~---~~~~aavi~ep~~~~-~G~~~~~~~~l~~l~~l~  225 (423)
T TIGR00713       150 KAGSGAATLGLPTSPGVPEDFAKLTLVLPYNDLEALEEVFEEY---GEEIAGVIVEPVAGN-MGVVPPKPEFLAGLRALT  225 (423)
T ss_pred             cccCcccccCCCCCCCCCcccccceEEeCCCCHHHHHHHHHHc---CCcEEEEEEeCCCCC-CCCcCCCHHHHHHHHHHH
Confidence            1   111111111100       000   02789999998742   2368899987 7788 788777 68899999999


Q ss_pred             HHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHH-
Q 009517          300 KKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYK-  378 (533)
Q Consensus       300 ~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~-  378 (533)
                      ++||+++|+||+|.++.+ |.  .... .. ..+   .+|     +.+|||.+ + +|+|+||+++   ++++++.+.. 
T Consensus       226 ~~~~~llI~DEv~~g~r~-g~--~~~~-~~-~~~---~pD-----i~t~sK~l-~-~G~pig~v~~---~~~i~~~~~~~  287 (423)
T TIGR00713       226 EEYGSLLIFDEVMTGFRV-AL--GGAQ-EY-FGV---EPD-----LTTLGKII-G-GGLPVGAFGG---RREIMERLAPE  287 (423)
T ss_pred             HHhCCEEEEEcccccccc-Cc--chhH-HH-hCC---Ccc-----hhhhhhhh-c-CCCceeeeeE---HHHHHHhhCcC
Confidence            999999999999999854 32  1111 11 122   466     45899999 6 7999999998   9999988863 


Q ss_pred             --hh-hccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceE-ecCCceeEEe-cc
Q 009517          379 --VA-SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITC-NKAEGAMYLF-PR  453 (533)
Q Consensus       379 --~~-~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~-~~~~gg~~~~-~~  453 (533)
                        .. ..+++.++++++++.++|+..+       . ....+.+.+..+.+++.|.+.+++. ++.. +.+.|+|+.+ +.
T Consensus       288 ~~~~~~~T~~~~~~~~aaa~a~l~~~~-------~-~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~g~~~~v~~~  358 (423)
T TIGR00713       288 GPVYQAGTLSGNPLAMAAGLATLKLLD-------E-EGVYTELDELAKRLAEGLSEVLEDT-GIPHTVNRVGSMFSLFFT  358 (423)
T ss_pred             CCeeeccCCCCCHHHHHHHHHHHHHHh-------c-ccHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEEeeccEEEEEEe
Confidence              22 2677899999999988885211       0 0123444555555666677777766 5433 4566666553 32


Q ss_pred             cCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHHH
Q 009517          454 IQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~  526 (533)
                      .+...+..+ ....+......++..++ ++||.+.++ .|+      .+||++..++++|++++++|++++++
T Consensus       359 ~~~~~~~~~-~~~~~~~~~~~~~~~l~-~~Gv~v~~~-~~~------~~~l~~~~t~~~i~~~~~~l~~~l~~  422 (423)
T TIGR00713       359 EEEVTNYAD-AKKSDTELFAKFFHEML-DKGVFLPPS-QFE------ACFLSAAHTEEDIENTIEAAEEVFAE  422 (423)
T ss_pred             cCCCCChhh-hhcccHHHHHHHHHHHH-HCCeEEecC-Ccc------ceeeECCCCHHHHHHHHHHHHHHHhh
Confidence            211000000 00000000123444444 689998753 332      57899988999999999999998865

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=99.96  E-value=6.1e-27  Score=242.60  Aligned_cols=330  Identities=13%  Similarity=0.042  Sum_probs=229.4

Q ss_pred             CHHHHHHHHHHHhcCC---CCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCe
Q 009517          141 SADSIERAWQILDQIP---GRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDG  217 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~---~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~  217 (533)
                      ++.|.+++.+.+....   ......|....+..++++.+++++.+.+|.+  ..+|++++ +++|+..++..++ ++||+
T Consensus        32 ~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~--~~~v~~~s-gt~a~~~~l~~l~-~~Gd~  107 (402)
T cd00378          32 SPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAE--YANVQPHS-GSQANLAVYFALL-EPGDT  107 (402)
T ss_pred             CHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCC--ceeeecCC-cHHHHHHHHHHhc-CCCCE
Confidence            6888888876553211   1123446667777888888888887777743  44566554 5799999999998 89999


Q ss_pred             EEEcCCcCcchHHH-----HHHhCCeEEEEecCCCC-CCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHH
Q 009517          218 ILCPIPQYPLYSAS-----IALHGGTLVPYYLDEAT-GWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEEN  291 (533)
Q Consensus       218 Vlv~~p~~~~~~~~-----~~~~g~~~~~v~~~~~~-~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~  291 (533)
                      |++++|+|..+...     ++..|.++..++++.+. ++.+|++++++.++..     ++++|++++|+||+  ..+   
T Consensus       108 Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~~-----~~~~v~~~~~~~~~--~~~---  177 (402)
T cd00378         108 IMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALEF-----KPKLIVAGASAYPR--PID---  177 (402)
T ss_pred             EEEecCccCccccccccccccccceeEEEecCCcCcccCCcCHHHHHHHHHhC-----CCCEEEecCcccCC--CcC---
Confidence            99999999876543     56678887777776542 6899999999999753     68899988998874  333   


Q ss_pred             HHHHHHHHHHcCCEEEEcccc-ccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCH
Q 009517          292 QRAIVDFCKKEGLVLLADEVY-QENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSA  370 (533)
Q Consensus       292 l~~i~~l~~~~~~~lI~De~y-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~  370 (533)
                      +++|+++|+++|+++|+|++| .++.+.+..+ ..+    .     ..|   +++.|+||++   +|+|+||+++   ++
T Consensus       178 ~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~-~~~----~-----~~d---v~~~s~sK~l---~G~~gg~i~~---~~  238 (402)
T cd00378         178 FKRFREIADEVGAYLLVDMAHVAGLVAGGVFP-NPL----P-----GAD---VVTTTTHKTL---RGPRGGLILT---RK  238 (402)
T ss_pred             HHHHHHHHHhcCCEEEEEccchhhhhhcccCC-Ccc----c-----CCc---EEEeccccCC---CCCCceEEEe---cc
Confidence            899999999999999999995 6655544211 111    0     123   6799999987   4899999998   55


Q ss_pred             -HHHHHHHHhhh-ccccCCh-HHHHHHHHHcCCCCCCChhHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCceEe-cCC
Q 009517          371 -EVREQIYKVAS-VNLCSNI-SGQILASLVMSPPKVGDESYESYCA-ERDGILSSLARRAKTLEDAFNSLEGITCN-KAE  445 (533)
Q Consensus       371 -~~~~~l~~~~~-~~~~~~~-~~q~a~~~~L~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~  445 (533)
                       ++++.+.+... ...+.+. ..+.++..++.          .... ..++.+++++++++++.+.|+++ |+.+. .+.
T Consensus       239 ~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~----------~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~  307 (402)
T cd00378         239 GELAKKINSAVFPGLQGGPHLHVIAAKAVALK----------EALEPEFKAYAKQVVENAKALAEALKER-GFKVVSGGT  307 (402)
T ss_pred             HHHHHHHHHHhCccccCCchHHHHHHHHHHHH----------HHhhHHHHHHHHHHHHHHHHHHHHHHhC-CCeEeecCC
Confidence             88888876543 2222222 22333233331          1111 34566777899999999999998 88876 467


Q ss_pred             ceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCC---CCCCceEEEEec-C-----CcCcHHHH
Q 009517          446 GAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ---VPGTWHFRCTIL-P-----QEDKIPAI  516 (533)
Q Consensus       446 gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~---~~g~~~iRis~~-~-----~~e~i~~~  516 (533)
                      +++++|++++...          . +.. .+.++|+++||.+.++...+.   ..+..++||++. .     ++++|+++
T Consensus       308 ~~~~v~v~~~~~~----------~-~~~-~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~di~~~  375 (402)
T cd00378         308 DNHLVLVDLRPKG----------I-TGK-AAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEMEEI  375 (402)
T ss_pred             CCeEEEEeCCccC----------C-CHH-HHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCHHHHHHH
Confidence            8999997765211          1 122 344678889999986432221   113348999994 2     58899999


Q ss_pred             HHHHHHHHHH
Q 009517          517 VTRLTDFHKN  526 (533)
Q Consensus       517 ~~~l~~~l~~  526 (533)
                      ++.|++++++
T Consensus       376 ~~~l~~~~~~  385 (402)
T cd00378         376 ADFIARALKD  385 (402)
T ss_pred             HHHHHHHHhc
Confidence            9999987764

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=99.96  E-value=1e-26  Score=223.17  Aligned_cols=328  Identities=18%  Similarity=0.250  Sum_probs=216.6

Q ss_pred             Ccccc-CCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH-HHHHHHHHHh-cc-----------CCCCeEEEcCCc
Q 009517          159 ATGAY-SHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS-PAVHMMMQLL-IR-----------SENDGILCPIPQ  224 (533)
Q Consensus       159 ~~~~Y-~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~-~al~~~~~~l-~~-----------~~gd~Vlv~~p~  224 (533)
                      ...+| +...|++++|+-+|+.++      +++++|++..+++ ..+..++... +.           .+.-+.++|.|+
T Consensus        60 D~RNY~G~l~Gipe~r~l~a~llg------v~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPG  133 (425)
T PF12897_consen   60 DCRNYPGGLDGIPEARELFAELLG------VPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPG  133 (425)
T ss_dssp             BTTSS-S-SS--HHHHHHHHHHHT------S-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES-
T ss_pred             cccCCCCccCChHHHHHHHHHHhC------CCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCC
Confidence            56789 899999999999999997      8899998876554 4443333322 10           112368999999


Q ss_pred             CcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEe-CCCCCCccCCCHHHHHHHHHH-HHHc
Q 009517          225 YPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLAEENQRAIVDF-CKKE  302 (533)
Q Consensus       225 ~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~-~p~NPtG~~~s~~~l~~i~~l-~~~~  302 (533)
                      |--|..+.+.+|.+.++||+.++   |+|.+.+++.+.+    .+.+|.|+.. ..+||||+++|.+..++++++ +...
T Consensus       134 YDRHFai~E~~Giemi~VpM~~d---GPDmD~Ve~LV~~----D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~  206 (425)
T PF12897_consen  134 YDRHFAITEHFGIEMIPVPMTED---GPDMDMVEELVAE----DPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAP  206 (425)
T ss_dssp             -HHHHHHHHHCT-EEEEEEEETT---EE-HHHHHHHTHT----STTEEEEEE-SSS-TTT-----HHHHHHHHHS--SST
T ss_pred             chHHHHHHHhhCcEEEecCCCCC---CCCHHHHHHHHhc----CCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCc
Confidence            99999999999999999999987   8999999999865    3478888755 449999999999999999998 4467


Q ss_pred             CCEEEEccccccccccCCCC---cccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHh
Q 009517          303 GLVLLADEVYQENVYVPEKK---FHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV  379 (533)
Q Consensus       303 ~~~lI~De~y~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~  379 (533)
                      +..|+.|++|.-..+.++.+   ..++...+.+.+  .++ +++.+.|.||.-  .||-+|+++.+   +++-++.+.+.
T Consensus       207 DFRI~WDNAY~vHhL~~~~~~~~~~nil~~~~~AG--npd-rv~~F~STSKIT--f~GaGva~~aa---S~~Nl~~~~~~  278 (425)
T PF12897_consen  207 DFRIFWDNAYAVHHLYDEEPRDALLNILDACAKAG--NPD-RVYVFASTSKIT--FPGAGVAFFAA---SEANLAWIKKH  278 (425)
T ss_dssp             T-EEEEE-TTTT-BSSSSSS------HHHHHHHTT---TT-SEEEEEESTTTS---TTSS-EEEEE----HHHHHHHHHH
T ss_pred             CeEEEeecCceEeeccccccchhhhHHHHHHHHcC--CCC-eEEEEecccccc--cCCcceeeeec---CHHHHHHHHHH
Confidence            99999999998766633222   236777777764  455 789999999965  48999999998   88888888776


Q ss_pred             hh-ccccCChHHHHHHHHHcCCCCCCChhHH-HHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCceEecCCceeEEec
Q 009517          380 AS-VNLCSNISGQILASLVMSPPKVGDESYE-SYCAERDGILSSLARRAKTLEDAFNS-----LEGITCNKAEGAMYLFP  452 (533)
Q Consensus       380 ~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~L~~-----~~g~~~~~~~gg~~~~~  452 (533)
                      .+ .+.++.-+.|..-..++.+       .+ ....++++.++.++-+.+.+.+.|++     ....+|..|.||+|+++
T Consensus       279 ~~~~tIgpdKvNQLRHvrff~d-------~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~GGYFIsl  351 (425)
T PF12897_consen  279 LSVQTIGPDKVNQLRHVRFFKD-------AEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPKGGYFISL  351 (425)
T ss_dssp             HHHH-S---HHHHHHHHHHHHS-------HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---SBSS-EEE
T ss_pred             hcCceeCccHHHHHHHHHHhcC-------hhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCCCceEEEE
Confidence            65 7789999999999999864       23 34566667777777777766666544     22368999999999996


Q ss_pred             ccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEc-CCCC--CCCCCCceEEEEec-CCcCcHHHHHHHHHHHHHHHH
Q 009517          453 RIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVP-GSGF--GQVPGTWHFRCTIL-PQEDKIPAIVTRLTDFHKNFM  528 (533)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~p-g~~f--~~~~g~~~iRis~~-~~~e~i~~~~~~l~~~l~~~~  528 (533)
                      ++.  ++            ....+.+++++.||.++| |..|  |.++....|||+++ .+.++++.+++.+.-.++-..
T Consensus       352 d~~--~G------------~AkrvV~lakeAGV~LT~AGAtfPyg~DP~D~nIRiAPS~P~leel~~Am~~~~~cv~la~  417 (425)
T PF12897_consen  352 DVL--DG------------TAKRVVELAKEAGVALTPAGATFPYGKDPRDSNIRIAPSYPSLEELETAMDVFATCVKLAA  417 (425)
T ss_dssp             EES--TT-------------HHHHHHHHHHTTEE---TTTTSGGG--TTS-EEEE--SSS-HHHHHHHHHHHHHHHHHHH
T ss_pred             ecC--CC------------hHHHHHHHHHHhCceeCCCCCCCCCCCCCCCCcEEecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            543  22            233456889999999999 7777  44556679999998 889999999999988776543

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.96  E-value=4.7e-27  Score=243.72  Aligned_cols=328  Identities=16%  Similarity=0.147  Sum_probs=226.3

Q ss_pred             CHHHHHHHHHHHhcCCCC---CccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc-CCCC
Q 009517          141 SADSIERAWQILDQIPGR---ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-SEND  216 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~---~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd  216 (533)
                      ++.+++++.+++......   ....|+......+|++++|++++      . ++.|++++| ++++..++..+.. .+|+
T Consensus        62 ~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g------~-~~~i~~~sG-~~a~~~~i~~l~~~~~g~  133 (410)
T PRK13392         62 HPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHG------K-ESALLFTSG-YVSNDAALSTLGKLLPGC  133 (410)
T ss_pred             CHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhC------C-CCEEEECcH-HHHHHHHHHHHhcCCCCC
Confidence            789999998888763210   01223333236788888888874      2 355666666 5777777776641 3788


Q ss_pred             eEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHH
Q 009517          217 GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIV  296 (533)
Q Consensus       217 ~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~  296 (533)
                      .|+++...|..+...+...|+++..++.+       |.+.+++.++...  .+++++|++++|+||||.+++   +++|.
T Consensus       134 ~vi~~~~~h~s~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~--~~~t~~v~i~~~~n~tG~~~~---l~~i~  201 (410)
T PRK13392        134 VILSDALNHASMIEGIRRSGAEKQVFRHN-------DLADLEEQLASVD--PDRPKLIAFESVYSMDGDIAP---IEAIC  201 (410)
T ss_pred             EEEEehhhhHHHHHHHHHcCCeEEEEeCC-------CHHHHHHHHHhcc--CCCCEEEEEeCCCCCCccccc---HHHHH
Confidence            88887777777777788889887766422       5667777765421  126889999999999999998   88999


Q ss_pred             HHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHH
Q 009517          297 DFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQI  376 (533)
Q Consensus       297 ~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l  376 (533)
                      ++|+++|+++|+||+|....++...  ..+... ..+   .+. ..+++.||||+| |++|   ||+++   ++++++.+
T Consensus       202 ~l~~~~~~~livDea~~~g~~g~~g--~g~~~~-~~~---~~~-~div~~tlsK~~-g~~G---G~~~~---~~~~~~~l  267 (410)
T PRK13392        202 DLADRYNALTYVDEVHAVGLYGARG--GGIAER-DGL---MDR-IDMIQGTLAKAF-GCLG---GYIAA---SADLIDFV  267 (410)
T ss_pred             HHHHHcCCEEEEECCccccCcCCCC--Cchhhh-ccC---CCC-CcEEEEEChHhh-hccc---chhhc---CHHHHHHH
Confidence            9999999999999999844443211  111111 111   111 127789999999 6777   89987   89999988


Q ss_pred             HHhhh---ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecc
Q 009517          377 YKVAS---VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPR  453 (533)
Q Consensus       377 ~~~~~---~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~  453 (533)
                      .+...   .+.+.+++.++++.++|+.           .++....+++++++++++++.|+++ |+.+.+++++++.. .
T Consensus       268 ~~~~~~~~~s~~~~~~~~~a~~aaL~~-----------~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~i-~  334 (410)
T PRK13392        268 RSFAPGFIFTTALPPAVAAGATAAIRH-----------LKTSQTERDAHQDRVAALKAKLNAN-GIPVMPSPSHIVPV-M  334 (410)
T ss_pred             HHhCcchhccCcCCHHHHHHHHHHHHH-----------HhcCHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCCCEEEE-E
Confidence            77653   2334566778877777742           1222345567888899999999998 88887788876532 1


Q ss_pred             cCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 009517          454 IQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~~  527 (533)
                      +..+.            ....+++++++++||.+.++.....+.+..++||++.  .+++++++++++|+++++++
T Consensus       335 ~~~~~------------~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~t~edid~l~~aL~~~~~~~  398 (410)
T PRK13392        335 VGDPT------------LCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDDEDIDALVAALVAIWDRL  398 (410)
T ss_pred             eCCHH------------HHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHc
Confidence            22111            1234556666778999998755443345569999994  88999999999999887653

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=99.96  E-value=5e-28  Score=238.66  Aligned_cols=389  Identities=15%  Similarity=0.131  Sum_probs=270.7

Q ss_pred             CCCCCCcccccCcCcccccCcccc-ccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCC
Q 009517           49 APTSSPAITVDSLNPKVLKCEYAV-RGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDH  127 (533)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~  127 (533)
                      .+.++..+.+..+|+.+++..+.+ .+.+++++.+...++.|+++      +||+..|.-                    
T Consensus        10 l~~~A~~~~pGGvnspvra~~~v~~~P~fi~~g~Ga~l~DvDGn~------YIDy~~~~G--------------------   63 (432)
T COG0001          10 LFERAKKVIPGGVNSPVRAFKSVGGYPIFIERGKGAYLTDVDGNE------YIDYVLGWG--------------------   63 (432)
T ss_pred             HHHHHhhhCCCCCCccccccCCCCCCCeeEEeccCCeEEeCCCCE------eeehhccCc--------------------
Confidence            344555666777888877766532 33488999999999999999      999988862                    


Q ss_pred             CCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHH
Q 009517          128 PSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMM  207 (533)
Q Consensus       128 p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~  207 (533)
                      |.++.+.      ++.|++++.+++.+     -..|+.+.   ++.-.+|+.+.++.+   ..+.|.++|++|||...++
T Consensus        64 p~ilGH~------~p~V~~Av~~~l~~-----G~~fg~Pt---e~Ei~~Aell~~~~p---~~e~vrfvnSGTEAtmsAi  126 (432)
T COG0001          64 PLILGHA------HPAVVEAVQEQLER-----GLSFGAPT---ELEVELAELLIERVP---SIEKVRFVNSGTEATMSAI  126 (432)
T ss_pred             ccccCCC------CHHHHHHHHHHHHh-----cCCCCCCC---HHHHHHHHHHHHhcC---cccEEEEecchhHHHHHHH
Confidence            3344444      68899999999987     23454432   333345555554422   3489999999999999999


Q ss_pred             HHhccCCC-CeEEEcCCcCcchHHHHHH-hCCe-------------------EEEEecCCCCCCCCCHHHHHHHHHHHHh
Q 009517          208 QLLIRSEN-DGILCPIPQYPLYSASIAL-HGGT-------------------LVPYYLDEATGWGLETSEVKKQLEAAKA  266 (533)
Q Consensus       208 ~~l~~~~g-d~Vlv~~p~~~~~~~~~~~-~g~~-------------------~~~v~~~~~~~~~ld~~~l~~~i~~~~~  266 (533)
                      +..+.-.| |+|+..+-+|+++.+.+.. +|.-                   ++.+|++       |++.+++++++.  
T Consensus       127 RlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yN-------D~~al~~~~~~~--  197 (432)
T COG0001         127 RLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYN-------DLEALEEAFEEY--  197 (432)
T ss_pred             HHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEecCC-------CHHHHHHHHHHc--
Confidence            99864445 8999999999998776544 2211                   2222222       899999999885  


Q ss_pred             cCCCeeEEEEeCC-CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEcccccccccc-CCCCcccHHHHHhhcCCCCCCceEE
Q 009517          267 KGITVRALVVINP-GNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYV-PEKKFHSFKKVSRSMGYGEKDISLV  343 (533)
Q Consensus       267 ~g~~~~~iil~~p-~NPtG~-~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vi  343 (533)
                       |.++.+||++.. .| -|. .+.++.+++|.++|+++|+++|+||+.++|... ++         .+++.++.||    
T Consensus       198 -g~~IAaVIvEPv~gn-~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~gG---------aq~~~gi~PD----  262 (432)
T COG0001         198 -GDDIAAVIVEPVAGN-MGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGG---------AQGYYGVEPD----  262 (432)
T ss_pred             -CCcEEEEEeccccCC-CCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCcc---------cccccCcCcc----
Confidence             457888888844 66 455 556667999999999999999999999998765 22         2333444788    


Q ss_pred             EEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhh----hccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHH
Q 009517          344 SFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA----SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGIL  419 (533)
Q Consensus       344 ~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~----~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~  419 (533)
                       +.+|+|.++  .|+++|.+.+   ..++|+.+....    ..|++.|+++..|..+.|+..           ...+..+
T Consensus       263 -lttlGKiIG--GGlP~ga~gG---r~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l-----------~~~~~~y  325 (432)
T COG0001         263 -LTTLGKIIG--GGLPIGAFGG---RAEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEEL-----------MTEEGVY  325 (432)
T ss_pred             -hhhhhhhhc--CCcceeeecc---HHHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHH-----------HhcccHH
Confidence             889999995  4999999987   999999886542    377899999999999887421           1111256


Q ss_pred             HHHHHHHHHHHHHHhcC---CCceE-ecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCC
Q 009517          420 SSLARRAKTLEDAFNSL---EGITC-NKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ  495 (533)
Q Consensus       420 ~~~~~~~~~l~~~L~~~---~g~~~-~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~  495 (533)
                      +++.++.+.|++.|++.   -|+.+ +...|+||.+.-.+.+....+++...+...-..+... +.++||++.|+. |. 
T Consensus       326 ~~l~~~~~~L~~gl~~~~~~~g~~~~v~~~gsm~~i~F~~~~~~n~~da~~sd~~~~~~~~~~-~l~~GV~l~ps~-~e-  402 (432)
T COG0001         326 ERLDALGERLAEGLRAAAERHGIPLTVNRVGSMFGIFFTEEGVRNYADAKRSDVERFAKFFHH-LLNRGVYLAPSQ-FE-  402 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCeEEeeecceEEEEecCCCCCCHHHHHhhchHHHHHHHHH-HHhCCcccCCcc-cc-
Confidence            66777777777777654   35544 2344555544322322233444444333333445554 456899999843 21 


Q ss_pred             CCCCceEEEEecCCcCcHHHHHHHHHHHHHHHHH
Q 009517          496 VPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       496 ~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~~~  529 (533)
                       .   + -+|.++++++|++.++++.++++++.+
T Consensus       403 -a---~-flS~ahte~di~~~~~a~~~~~~~~~~  431 (432)
T COG0001         403 -A---G-FLSTAHTEEDIDRTLEAADEAFKELAG  431 (432)
T ss_pred             -c---e-eeecccCHHHHHHHHHHHHHHHHHhhc
Confidence             1   3 378889999999999999999887654

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=99.96  E-value=8.9e-28  Score=249.86  Aligned_cols=332  Identities=17%  Similarity=0.154  Sum_probs=222.3

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc-CCCCeEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-SENDGIL  219 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~Vl  219 (533)
                      ++.+++++.+++..     ...|+...+..++...+++.+.+.++  ...++|++++|+++|+..+++.++. .++++|+
T Consensus        54 ~p~v~~a~~~~~~~-----~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~v~~~~sgsea~~~al~~~~~~~~~~~ii  126 (413)
T cd00610          54 HPEVVEALKEQLAK-----LTHFSLGFFYNEPAVELAELLLALTP--EGLDKVFFVNSGTEAVEAALKLARAYTGRKKII  126 (413)
T ss_pred             CHHHHHHHHHHHHh-----CcCccCcccCCHHHHHHHHHHHHhCC--CCCCEEEEcCcHHHHHHHHHHHHHHHcCCCeEE
Confidence            68899999998865     23454443456666777777766655  3578999999999999999998741 3679999


Q ss_pred             EcCCcCcchHHHHHHhCC-------------eEEEEecCCC----CCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCC
Q 009517          220 CPIPQYPLYSASIALHGG-------------TLVPYYLDEA----TGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP  282 (533)
Q Consensus       220 v~~p~~~~~~~~~~~~g~-------------~~~~v~~~~~----~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NP  282 (533)
                      +.+++|+++.......+.             +++.+|.+..    ..+..|++.|++.++..   +.++++|+++..+|+
T Consensus       127 ~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~vi~~p~~~~  203 (413)
T cd00610         127 SFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEH---PEEVAAVIVEPIQGE  203 (413)
T ss_pred             EECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcC---CCCEEEEEEccccCC
Confidence            999999997665544321             3455655421    12455889999988752   124666666666788


Q ss_pred             CccCC-CHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeE
Q 009517          283 TGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGG  361 (533)
Q Consensus       283 tG~~~-s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG  361 (533)
                      +|.++ +.+++++|.++|++||+++|+||+|+++.+.+.  .... .. .++   .++     +.||||.+ + .|+|+|
T Consensus       204 ~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~--~~~~-~~-~~~---~~d-----~~t~sK~l-~-~g~~~g  269 (413)
T cd00610         204 GGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGK--MFAF-EH-FGV---EPD-----IVTLGKGL-G-GGLPLG  269 (413)
T ss_pred             CCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcc--hhhH-hh-cCC---CCC-----eEEEcccc-c-CccccE
Confidence            89865 778899999999999999999999998654432  1111 11 111   345     56899999 5 389999


Q ss_pred             EEEEecCCHHHHHHH--HHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--
Q 009517          362 YMEVTGFSAEVREQI--YKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL--  436 (533)
Q Consensus       362 ~v~~~~~~~~~~~~l--~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--  436 (533)
                      |+++   ++++++.+  ..... .+++.+++++.++.++|+           ..+. ..+.++++++++++.+.|+++  
T Consensus       270 ~~~~---~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~-----------~l~~-~~~~~~~~~~~~~l~~~l~~~~~  334 (413)
T cd00610         270 AVLG---REEIMDAFPAGPGLHGGTFGGNPLACAAALAVLE-----------VLEE-EGLLENAAELGEYLRERLRELAE  334 (413)
T ss_pred             EEEE---cHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHH-----------HHHh-ccHHHHHHHHHHHHHHHHHHHHh
Confidence            9998   89999886  22322 567888998888887774           1121 345666777777777777765  


Q ss_pred             --CCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCc
Q 009517          437 --EGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDK  512 (533)
Q Consensus       437 --~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~  512 (533)
                        +.+....+.| .++|+.+..+... .   .........++ +.|.++||.+.|+.       .+++|+++.  .++++
T Consensus       335 ~~~~~~~~~~~g-~~~~~~~~~~~~~-~---~~~~~~~~~~~-~~l~~~gv~v~~~~-------~~~lR~~~~~~~t~~~  401 (413)
T cd00610         335 KHPLVGDVRGRG-LMIGIELVKDRAT-K---PPDKELAAKII-KAALERGLLLRPSG-------GNVIRLLPPLIITEEE  401 (413)
T ss_pred             hCCcEEEeecCc-eEEEEEEecCCCc-C---CcchHHHHHHH-HHHHHCCeEEeecC-------CCEEEEECCCcCCHHH
Confidence              1223334555 4455444321000 0   00000123344 44557899999864       237999885  68899


Q ss_pred             HHHHHHHHHHHH
Q 009517          513 IPAIVTRLTDFH  524 (533)
Q Consensus       513 i~~~~~~l~~~l  524 (533)
                      |++++++|++++
T Consensus       402 i~~~~~~l~~~l  413 (413)
T cd00610         402 IDEGLDALDEAL  413 (413)
T ss_pred             HHHHHHHHHHhC
Confidence            999999998763

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>PLN02721 threonine aldolase

Probab=99.96  E-value=6e-27  Score=238.46  Aligned_cols=322  Identities=13%  Similarity=0.148  Sum_probs=208.4

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC-CCCeEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS-ENDGIL  219 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~-~gd~Vl  219 (533)
                      ++.+.+++.+....  . ....|.|.  ..+|+++++++++.        +.++++++|++++..++..++ . +||+|+
T Consensus        19 ~~~~~~a~~~~~~~--~-~~~~~~~~--~~~l~~~la~~~~~--------~~~~~~~~Gs~a~~~~l~~~~-~~~gd~Vl   84 (353)
T PLN02721         19 TDAMRAAMANAEVD--D-DVLGYDPT--ALRLEEEMAKIFGK--------EAALFVPSGTMGNLISVLVHC-DVRGSEVI   84 (353)
T ss_pred             CHHHHHHHHhccCC--C-cccCCCHH--HHHHHHHHHHHhCC--------ceeEEecCccHHHHHHHHHHc-cCCCCeEE
Confidence            45666665442111  1 23334443  78999999999852        335666666667777777777 5 899999


Q ss_pred             EcCCcCcchHH---HHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcC-CCeeEEEEeC-CCCCCccCCCHHHHHH
Q 009517          220 CPIPQYPLYSA---SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKG-ITVRALVVIN-PGNPTGQVLAEENQRA  294 (533)
Q Consensus       220 v~~p~~~~~~~---~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g-~~~~~iil~~-p~NPtG~~~s~~~l~~  294 (533)
                      +++|+|.....   .+...|++++.++.++  ++.+|++.+++.+++..+++ +++++|++++ ++||||.+++.+++++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~  162 (353)
T PLN02721         85 LGDNSHIHLYENGGISTLGGVHPRTVKNNE--DGTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDK  162 (353)
T ss_pred             EcCccceehhcccchhhhcCceeEecCCCc--CCCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHH
Confidence            99999864443   5677899999998764  45789999999997421111 3789999986 5889999999999999


Q ss_pred             HHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEE-EEEecCCHHHH
Q 009517          295 IVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGY-MEVTGFSAEVR  373 (533)
Q Consensus       295 i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~-v~~~~~~~~~~  373 (533)
                      |+++|+++|+++|+||+|....+..  ...+...+...     .+   .++.|+||++ +  | ++|| +++   +++++
T Consensus       163 l~~l~~~~g~~livD~a~~~~~~~~--~~~~~~~~~~~-----~d---~~~~s~sK~l-~--~-~~G~~~~~---~~~~~  225 (353)
T PLN02721        163 VGELAKRHGLKLHIDGARIFNASVA--LGVPVHRLVKA-----AD---SVSVCLSKGL-G--A-PVGSVIVG---SKSFI  225 (353)
T ss_pred             HHHHHHHcCCEEEEEchhhhcchhh--hCCCHHHHhhh-----CC---EEEEeccccc-C--C-ceeeEEec---CHHHH
Confidence            9999999999999999985321100  01122122111     22   3355799988 4  3 4676 444   88988


Q ss_pred             HHHHHhhhc-cccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceE--ecCCceeEE
Q 009517          374 EQIYKVASV-NLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITC--NKAEGAMYL  450 (533)
Q Consensus       374 ~~l~~~~~~-~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~--~~~~gg~~~  450 (533)
                      +.+...... ....+..++.++..+.        .   +.+..+.+ ++..++++.+.+.|++++++.+  ..+.++ ++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~---l~~~~~~~-~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~-~~  292 (353)
T PLN02721        226 RKAKRLRKTLGGGMRQVGVLAAAALV--------A---LQENVPKL-EDDHKKAKLLAEGLNQIKGLRVNVAAVETN-IV  292 (353)
T ss_pred             HhHHHHHHhcCCCeehhHHHHHHHHH--------H---HHHHHHHH-HHHHHHHHHHHHHHHhCCCcEEecCCccce-EE
Confidence            887766542 2222223322222211        0   11222223 2335567889999998878754  344444 57


Q ss_pred             ecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHHHH
Q 009517          451 FPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~  526 (533)
                      |++++...         + .+...++.. |.++||.+.|+.       .+++|+++.  .+++++++++++|++++..
T Consensus       293 ~~~~~~~~---------~-~~~~~~~~~-L~~~gi~v~~~~-------~~~lR~~~~~~~~~~~i~~~~~~l~~~~~~  352 (353)
T PLN02721        293 YFDITDGS---------R-ITAEKLCKS-LEEHGVLLMPGN-------SSRIRVVTHHQISDSDVQYTLSCFQQAALT  352 (353)
T ss_pred             EEEccCCc---------c-ccHHHHHHH-HHhCCcEEecCC-------CceEEEEecCcCCHHHHHHHHHHHHHHhhc
Confidence            76554110         0 123444444 558999999863       238999995  7889999999999987653

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=99.96  E-value=5.9e-27  Score=240.49  Aligned_cols=316  Identities=15%  Similarity=0.135  Sum_probs=220.2

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCC-CeEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-DGIL  219 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vl  219 (533)
                      ++++++++.+++.+..     ... .....+++.++++++.+..+    .+.+++++++++|+..+++.+...+| ++|+
T Consensus        47 ~p~v~~a~~~~~~~~~-----~~~-~~~~~~~~~~la~~l~~~~~----~~~~~~~~sG~~a~~~A~~~a~~~~g~~~vi  116 (377)
T PRK02936         47 HPTVTKAVQEQLDDIW-----HVS-NLFTNSLQEEVASLLAENSA----GDLVFFCNSGAEANEAALKLARKHTGKSKIV  116 (377)
T ss_pred             CHHHHHHHHHHHHhcc-----ccc-cccCCHHHHHHHHHHHhcCC----CCEEEEeCCcHHHHHHHHHHHHHhcCCCeEE
Confidence            6899999999998632     112 22357899999999986543    35899999999999999997642345 6799


Q ss_pred             EcCCcCcchHHHHHHh-CCeEE---EEecCCCCCC--CCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccC-CCHHHH
Q 009517          220 CPIPQYPLYSASIALH-GGTLV---PYYLDEATGW--GLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV-LAEENQ  292 (533)
Q Consensus       220 v~~p~~~~~~~~~~~~-g~~~~---~v~~~~~~~~--~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~-~s~~~l  292 (533)
                      +.++.|++........ +....   ..+..++-.+  .-|++.+++.+.+      ++++|+++.+++++|.. .+++.+
T Consensus       117 ~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~ii~e~i~~~~G~~~~~~~~l  190 (377)
T PRK02936        117 TFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFNDIKALKEVMNE------EVAAVMLEVVQGEGGVIPADPAFL  190 (377)
T ss_pred             EECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCCCCHHHHHHhccC------CeEEEEEecccCCCCCccCCHHHH
Confidence            9999999754333222 22111   1111110000  1178999998865      78999999999999976 588999


Q ss_pred             HHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHH
Q 009517          293 RAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEV  372 (533)
Q Consensus       293 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~  372 (533)
                      ++|.++|++||+++|+||+|.+|.+.|.  ..++..  ..+   .+|     +.+|||++ + +|+|+||+++   ++++
T Consensus       191 ~~l~~l~~~~~~~lI~DEv~~g~g~~g~--~~~~~~--~~~---~~d-----i~t~sK~l-~-~G~~ig~v~~---~~~~  253 (377)
T PRK02936        191 QEVQTLCKKFGALLIIDEVQTGIGRTGT--LFAYEQ--FGL---DPD-----IVTVAKGL-G-NGIPVGAMIG---KKEL  253 (377)
T ss_pred             HHHHHHHHHcCCEEEEeccccCCCcCch--hhHHHh--hCC---CCc-----EEEEcccc-c-CCCccEEEEE---cHHH
Confidence            9999999999999999999999777553  222111  122   455     34799999 6 7999999998   8999


Q ss_pred             HHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCceEecCCce
Q 009517          373 REQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNS----LEGITCNKAEGA  447 (533)
Q Consensus       373 ~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~g~~~~~~~gg  447 (533)
                      ++.+..... .++++++++|+++.++|+..           . .+...++++++.+++++.|++    ++.+..+.+. |
T Consensus       254 ~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~-----------~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~-g  320 (377)
T PRK02936        254 GTAFGPGSHGSTFGGNPLAMAAAKEVLQVI-----------K-QPSFLEEVQEKGEYFLQKLQEELEHLECVKNIRGK-G  320 (377)
T ss_pred             HhhccCCCCCCCCCCCHHHHHHHHHHHHHH-----------H-hccHHHHHHHHHHHHHHHHHHHHhhCCcEEeEeec-c
Confidence            888865433 56788999999999988521           1 123445566666777776665    3334444454 4


Q ss_pred             eEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEe--cCCcCcHHHHHHHHHHHH
Q 009517          448 MYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTI--LPQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~--~~~~e~i~~~~~~l~~~l  524 (533)
                      +++|+.+..+              ...+ ...|.++||.+.|+       +.+++||++  ..++++|++++++|++++
T Consensus       321 ~~~~i~~~~~--------------~~~~-~~~l~~~gv~v~~~-------g~~~lRi~p~~~~~~~~i~~~i~~l~~~~  377 (377)
T PRK02936        321 LMIGIECTEE--------------VAPV-IEQLREEGLLVLSA-------GPNVIRLLPPLVVTKEELDQAVYLLKKVL  377 (377)
T ss_pred             eEEEEEecch--------------HHHH-HHHHHHCCeEEecC-------CCCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence            7788665411              2233 35667789999873       234899996  488999999999998763

>PLN02483 serine palmitoyltransferase

Probab=99.96  E-value=1.6e-26  Score=242.77  Aligned_cols=315  Identities=14%  Similarity=0.142  Sum_probs=216.3

Q ss_pred             CccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCe
Q 009517          159 ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGT  238 (533)
Q Consensus       159 ~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~  238 (533)
                      ....|+...+..+|++++|++++.       ++.|++++|. .+...++.+++ ++||.|++++|+|..+...++..|++
T Consensus       138 sr~~~g~~~~~~ele~~lA~~~g~-------~~ai~~~~G~-~an~~~i~al~-~~Gd~Vi~d~~~h~s~~~~~~~~Ga~  208 (489)
T PLN02483        138 SRVDGGTTKLHRELEELVARFVGK-------PAAIVFGMGY-ATNSTIIPALI-GKGGLIISDSLNHNSIVNGARGSGAT  208 (489)
T ss_pred             cccccCCcHHHHHHHHHHHHHhCC-------CcEEEECCHH-HHHHHHHHHhC-CCCCEEEEcchhhHHHHHHHHHcCCe
Confidence            456688888899999999999862       4567776664 45557777777 89999999999999999999999999


Q ss_pred             EEEEecCCCCCCCCCHHHHHHHHHHHHhcC-CC-----eeEEEEeC-CCCCCccCCCHHHHHHHHHHHHHcCCEEEEccc
Q 009517          239 LVPYYLDEATGWGLETSEVKKQLEAAKAKG-IT-----VRALVVIN-PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEV  311 (533)
Q Consensus       239 ~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g-~~-----~~~iil~~-p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~  311 (533)
                      ++.++..       |++++++.+++....+ ++     .++++++. ..|++|.+.+   +++|+++|++||+++|+||+
T Consensus       209 v~~~~~~-------d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~---l~~I~~la~~~~~~livDEa  278 (489)
T PLN02483        209 IRVFQHN-------TPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCK---LPEIVAVCKKYKAYVYLDEA  278 (489)
T ss_pred             EEEEeCC-------CHHHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCcccC---HHHHHHHHHHcCCEEEEECc
Confidence            9999854       5677777776432111 12     25566664 5699999987   99999999999999999999


Q ss_pred             cccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-c---cccCC
Q 009517          312 YQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-V---NLCSN  387 (533)
Q Consensus       312 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~---~~~~~  387 (533)
                      |+...++..  ......+ ..+   ++...+|+++||||+| |++|   ||+++   ++++++.+..... .   ...++
T Consensus       279 ~s~g~~G~~--G~g~~~~-~~v---~~~~~dI~~~SfSKs~-g~~G---G~i~~---~~~li~~l~~~~~~~~~~~~~~p  345 (489)
T PLN02483        279 HSIGAVGKT--GRGVCEL-LGV---DPADVDIMMGTFTKSF-GSCG---GYIAG---SKELIQYLKRTCPAHLYATSMSP  345 (489)
T ss_pred             CccCccCCC--CCchHHh-cCC---CcccCcEEEEecchhc-ccCc---eEEEc---CHHHHHHHHHhCccccccCCcCH
Confidence            974333211  1111111 111   2333568899999999 6666   99987   9999999887542 1   12223


Q ss_pred             hHHHHHHHHHcC---CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHH
Q 009517          388 ISGQILASLVMS---PPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAA  464 (533)
Q Consensus       388 ~~~q~a~~~~L~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~  464 (533)
                      +..| ++.+.|+   ...        ..+...+++++++++++++++.|+++ |+.+..+.++..+|+-+..+..     
T Consensus       346 ~~~~-~~~aaL~~l~~~~--------g~~~~~~~~~~l~~~~~~l~~~L~~~-G~~v~~~~~sp~~~l~l~~~~~-----  410 (489)
T PLN02483        346 PAVQ-QVISAIKVILGED--------GTNRGAQKLAQIRENSNFFRSELQKM-GFEVLGDNDSPVMPIMLYNPAK-----  410 (489)
T ss_pred             HHHH-HHHHHHHHHHhCc--------cccchHHHHHHHHHHHHHHHHHHHHC-CCcccCCCCCCEEEEEECCHHH-----
Confidence            3333 3333332   000        00122345678999999999999998 8877766555555533322211     


Q ss_pred             HhcCCCChHHHHHHHHHccceEEEcCCCCC-CCCCCceEEEEec--CCcCcHHHHHHHHHHHHHHHHH
Q 009517          465 EAEKTVPDAFYCRRLLNATGIVLVPGSGFG-QVPGTWHFRCTIL--PQEDKIPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       465 ~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~-~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~~~~  529 (533)
                             ...++.+++ ++||.+.| ..|. .+.+.+.+||+++  +++|+|++++++|+++++.+.-
T Consensus       411 -------~~~~~~~Ll-~~GI~v~~-~~fp~~p~~~~~vRi~isa~~t~edId~~l~~L~~~~~~~~~  469 (489)
T PLN02483        411 -------IPAFSRECL-KQNVAVVV-VGFPATPLLLARARICISASHSREDLIKALEVISEVGDLVGI  469 (489)
T ss_pred             -------HHHHHHHHH-HCCcEEee-eCCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHhCc
Confidence                   234555655 57999997 5553 2333458999995  7899999999999999887643

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=99.96  E-value=2.5e-27  Score=244.85  Aligned_cols=360  Identities=13%  Similarity=0.114  Sum_probs=241.0

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      +..++++...++.|+++      ++|+..|....                    .+...      ++++++++.+++.+.
T Consensus        24 ~~~~~~G~~~~d~dG~~------~lD~~~g~~~~--------------------~lGh~------~p~v~~A~~~~~~~~   71 (406)
T PRK12381         24 IPVRGEGSRLWDQQGKE------YIDFAGGIAVN--------------------ALGHA------HPALREALNEQASKF   71 (406)
T ss_pred             eEEEeecCEEEeCCCCE------EEEcCcCHhhc--------------------cCCCC------CHHHHHHHHHHHhhc
Confidence            45667777667777777      88886654321                    01111      588999999998763


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC-------CCCeEEEcCCcCcch
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS-------ENDGILCPIPQYPLY  228 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~-------~gd~Vlv~~p~~~~~  228 (533)
                      .. ....|... ...+|.+.++++    .+    .++++++++|++|++.+++.+...       ...+|+..+.+|++.
T Consensus        72 ~~-~~~~~~~~-~~~~la~~l~~~----~~----~~~v~~~~sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~  141 (406)
T PRK12381         72 WH-TGNGYTNE-PVLRLAKKLIDA----TF----ADRVFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGR  141 (406)
T ss_pred             cc-ccCccCCH-HHHHHHHHHHhh----CC----CCeEEEcCCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCc
Confidence            22 11122211 133444444443    22    469999999999999999987421       346899999999998


Q ss_pred             HHHHHHhCCeEEEE----ecCCC--CCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCC--CHHHHHHHHHHHH
Q 009517          229 SASIALHGGTLVPY----YLDEA--TGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVL--AEENQRAIVDFCK  300 (533)
Q Consensus       229 ~~~~~~~g~~~~~v----~~~~~--~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~--s~~~l~~i~~l~~  300 (533)
                      .......+......    ++.+.  .-...|++.+++.+++      ++++|++ .|.||+|-++  +.+.+++|+++|+
T Consensus       142 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~------~~aavii-EPv~~~gg~~~~~~~~l~~l~~l~~  214 (406)
T PRK12381        142 TLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLNSASALIDD------QTCAVIV-EPIQGEGGVIPADKAFLQGLRELCD  214 (406)
T ss_pred             chhHHhhcCCcccccCCCCCCCCeeEeCCCCHHHHHHhccC------CeeEEEE-eCCcCCCCCcCCCHHHHHHHHHHHH
Confidence            76554443321100    11000  0012378999988865      6878877 5888887644  7899999999999


Q ss_pred             HcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhh
Q 009517          301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA  380 (533)
Q Consensus       301 ~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~  380 (533)
                      +||+++|+||+|.++.++|.  ......  ..+   .+|     +.||||++ | +|+|+||+++   ++++++.+....
T Consensus       215 ~~~~llI~DEv~tG~gr~G~--~~~~~~--~~v---~pD-----i~t~sK~l-~-gG~~ig~~~~---~~~~~~~~~~~~  277 (406)
T PRK12381        215 RHNALLIFDEVQTGVGRTGE--LYAYMH--YGV---TPD-----VLTTAKAL-G-GGFPIGAMLT---TEKCASVMTVGT  277 (406)
T ss_pred             HcCCEEEEcchhhCCCCCcc--hhhhHh--hCC---CCC-----EEEehhhh-h-CCCceEEEEE---cHHHHhhcCCCC
Confidence            99999999999999877653  222111  122   466     46999999 5 6999999998   899998886543


Q ss_pred             -hccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCceEecCCceeEEecccC
Q 009517          381 -SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL----EGITCNKAEGAMYLFPRIQ  455 (533)
Q Consensus       381 -~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~gg~~~~~~~~  455 (533)
                       ..+++++++.++++.++|+           ..+ ...++++++++.+++.+.|+++    +.+..++.. |+++++.+.
T Consensus       278 ~~~t~~~~pl~~aaa~a~l~-----------~l~-~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~-Gl~~~~~l~  344 (406)
T PRK12381        278 HGTTYGGNPLASAVAGKVLE-----------LIN-TPEMLNGVKQRHDWFVERLNTINARYGLFSEIRGL-GLLIGCVLN  344 (406)
T ss_pred             CCCCCCCCHHHHHHHHHHHH-----------HHh-hccHHHHHHHHHHHHHHHHHHHHhhCCCEEEEecC-eEEEEEEec
Confidence             3678889999999988774           111 2356778888889999988876    112233334 455565443


Q ss_pred             CCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHHHHHHHHhc
Q 009517          456 LPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFHKNFMDKFR  532 (533)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~~~~~~~  532 (533)
                      .+..          ..... +...+.++||++.++       +.+++||++.  +++++|++++++|+++++++.++.+
T Consensus       345 ~~~~----------~~~~~-~~~~l~~~Gv~v~~~-------g~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~~~~~~~  405 (406)
T PRK12381        345 AEYA----------GKAKQ-ISQEAAKAGVMVLIA-------GPNVVRFAPALNISEEEITTGLDRFARACERFVSRGS  405 (406)
T ss_pred             Cchh----------hHHHH-HHHHHHHCCcEEeeC-------CCCEEEEeCCccCCHHHHHHHHHHHHHHHHHHHhccC
Confidence            2110          01223 335567789999863       1238999985  8999999999999999999877653

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=99.96  E-value=3e-27  Score=244.41  Aligned_cols=349  Identities=14%  Similarity=0.129  Sum_probs=234.7

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      +..++++...++.||++      +|||..|....                    .+...      ++++++++.+++.+.
T Consensus        25 ~~~~~~G~~~~d~dG~~------~iD~~~~~~~~--------------------~lGh~------~p~v~~a~~~~~~~~   72 (403)
T PRK05093         25 IPVRGEGSRVWDQQGKE------YIDFAGGIAVT--------------------ALGHC------HPALVKALKEQGEKL   72 (403)
T ss_pred             eEEEeecCEEEeCCCCE------EEEcCcCHHhc--------------------cCCCC------CHHHHHHHHHHHHhc
Confidence            55666666666666666      88886653221                    01211      689999999988763


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC------C-CCeEEEcCCcCcch
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS------E-NDGILCPIPQYPLY  228 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~------~-gd~Vlv~~p~~~~~  228 (533)
                      ..     +.... ..+....+++.+.+..+    .+.++++++|++|+..+++.++..      . .++|+..+-+|++.
T Consensus        73 ~~-----~~~~~-~~~~~~~l~~~l~~~~~----~~~~~~~~sGseA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~  142 (403)
T PRK05093         73 WH-----ISNVF-TNEPALRLAKKLIDATF----AERVFFANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGR  142 (403)
T ss_pred             Cc-----ccCcc-CCHHHHHHHHHHHhhCC----CCEEEEeCchHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCc
Confidence            21     11111 11223345555544322    468999999999999999977411      2 35788899999986


Q ss_pred             HHHHHHhCCe-------------EEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCC--CHHHHH
Q 009517          229 SASIALHGGT-------------LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVL--AEENQR  293 (533)
Q Consensus       229 ~~~~~~~g~~-------------~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~--s~~~l~  293 (533)
                      ...+...+..             +..++.       -|++.+++.+.+      ++++|+++ |.||+|.++  +.+.++
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~------~~aaiiie-p~~~~gg~~~~~~~~l~  208 (403)
T PRK05093        143 TLFTVSVGGQPKYSDGFGPKPADITHVPF-------NDLAAVKAVIDD------HTCAVVVE-PIQGEGGVIPATPEFLQ  208 (403)
T ss_pred             hhhhHhhcCChhhhhcCCCCCCCcEEeCC-------CCHHHHHHHhcC------CeEEEEEe-cccCCCCCccCCHHHHH
Confidence            5433222111             111111       178999988865      68888877 777777654  889999


Q ss_pred             HHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHH
Q 009517          294 AIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVR  373 (533)
Q Consensus       294 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~  373 (533)
                      +|+++|++||+++|+||+|+++.++|.  ..+...  .++   .+|     +.||||++ + +|+|+||+++   +++++
T Consensus       209 ~l~~l~~~~g~~lI~DEv~~g~g~~g~--~~~~~~--~~~---~pd-----i~s~sK~l-~-~G~rig~vv~---~~~i~  271 (403)
T PRK05093        209 GLRELCDQHNALLIFDEVQTGMGRTGD--LFAYMH--YGV---TPD-----ILTSAKAL-G-GGFPIGAMLT---TAEIA  271 (403)
T ss_pred             HHHHHHHHcCCEEEEechhhCCCCCcc--chhhhh--cCC---CCC-----EEEecccc-c-CCcceEEEEE---cHHHH
Confidence            999999999999999999999877663  222111  122   466     67999999 5 7999999998   99999


Q ss_pred             HHHHHhh-hccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C--CceEecCCceeE
Q 009517          374 EQIYKVA-SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL-E--GITCNKAEGAMY  449 (533)
Q Consensus       374 ~~l~~~~-~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~--g~~~~~~~gg~~  449 (533)
                      +.+.... ..+++++++.|+++.++|+.           .. ...++++++++++++.+.|+++ .  ++....+.+|++
T Consensus       272 ~~l~~~~~~~t~~~~~~~~~aa~a~L~~-----------~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~  339 (403)
T PRK05093        272 SHFKVGTHGSTYGGNPLACAVAEAVFDI-----------IN-TPEVLEGVKARRQRFVDGLQKINQKYGVFSEIRGMGLL  339 (403)
T ss_pred             hhcCCCCCCCCCCCCHHHHHHHHHHHHH-----------Hh-hccHHHHHHHHHHHHHHHHHHHHhhCCCeEeEeeCceE
Confidence            8887543 36678899999999887741           11 1345678888999999999876 1  222233456788


Q ss_pred             EecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 009517          450 LFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~~  527 (533)
                      +|+.+..+..          .....++..++ ++||.+.|+       +.+++||+++  .++++|++++++|+++++++
T Consensus       340 ~~~~l~~~~~----------~~~~~~~~~l~-~~Gv~v~~~-------g~~~lRl~~~~~~~~~~i~~~~~~l~~~l~~~  401 (403)
T PRK05093        340 IGAELKPQYK----------GRARDFLNAAA-EEGVMVLVA-------GPDVLRFAPSLVIEEADIDEGLARFEKAVAKV  401 (403)
T ss_pred             EEEEecCcch----------hHHHHHHHHHH-HCCeEEecC-------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            8865531100          12345555555 579999973       2348999764  68999999999999998764

>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.96  E-value=1.2e-28  Score=229.38  Aligned_cols=359  Identities=15%  Similarity=0.126  Sum_probs=265.6

Q ss_pred             ccccCccccccchHHHHHHHHHHhhcCCCCCCc-cceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCH
Q 009517           64 KVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSF-DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSA  142 (533)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~  142 (533)
                      .+....|+|.+..+.++.+...|+++|.+|+++ ..+--.++|+++                                 +
T Consensus        32 k~~ahnyhpLpvvf~ka~g~~vwD~eGk~ylDflsaysaVnqGhch---------------------------------p   78 (427)
T KOG1402|consen   32 KYGAHNYHPLPVVFSKAKGSRVWDPEGKEYLDFLSAYSAVNQGHCH---------------------------------P   78 (427)
T ss_pred             hcccccCCcCceEEEecCCcEEECCCccchhhhhhhhhhcccCCCC---------------------------------H
Confidence            678889999999999999999999999999998 778888888875                                 8


Q ss_pred             HHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc-----C--CC
Q 009517          143 DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-----S--EN  215 (533)
Q Consensus       143 ~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-----~--~g  215 (533)
                      .+++++.++..+....+...|.+..  .+    .++++...+|    .+.|+.++.+.||.+.+++..++     +  |.
T Consensus        79 ki~~aLqeq~~kLtlssrafYnd~~--~~----f~~~vt~lf~----~~kvlpmnTGaEa~Eta~KLaR~wgy~~K~ip~  148 (427)
T KOG1402|consen   79 KIIKALQEQADKLTLSSRAFYNDVL--GE----FAEYVTKLFG----YDKVLPMNTGAEAVETACKLARKWGYRKKNIPK  148 (427)
T ss_pred             HHHHHHHHHHhHhhhhhHHHhhhhH--HH----HHHHHHHhcC----cceeeecccchhHHHHHHHHHHHHHHhhccCCc
Confidence            8999999988876655566777664  34    4555555444    67899999999999999998861     1  22


Q ss_pred             --CeEEEcCCcCcchHHHHHHhCCeEEEEecCCC----CCCCC------------CHHHHHHHHHHHHhcCCCeeEEEEe
Q 009517          216 --DGILCPIPQYPLYSASIALHGGTLVPYYLDEA----TGWGL------------ETSEVKKQLEAAKAKGITVRALVVI  277 (533)
Q Consensus       216 --d~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~----~~~~l------------d~~~l~~~i~~~~~~g~~~~~iil~  277 (533)
                        .+|+....+|++-.         .-.+.+..+    .+|+.            |.++|+.++++     ++.+++++.
T Consensus       149 nka~il~~~~nFhGrT---------~~ais~s~d~ds~~~fgp~~P~~~~~v~Y~d~eale~~l~~-----~~vaaFivE  214 (427)
T KOG1402|consen  149 NKAKILSAENNFHGRT---------LGAISLSTDPDSWDGFGPFLPGVVDKVPYGDAEALEVALKS-----PNVAAFIVE  214 (427)
T ss_pred             cceeEEEecccccCce---------eeeEEecCCcchhhccCCCCCCcceeeccCCHHHHHHHhcC-----CCeeEEEee
Confidence              23444445555432         222222111    12221            78999999987     389999988


Q ss_pred             CCCCCCccCC-CHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCC
Q 009517          278 NPGNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGEC  356 (533)
Q Consensus       278 ~p~NPtG~~~-s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~  356 (533)
                      ..+...|++. ++..++++.++|.+||+++|.||+++++..+|+       .++.++..+.||     +.-|.|+++|  
T Consensus       215 PIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk-------~la~d~env~PD-----ivilgKalSG--  280 (427)
T KOG1402|consen  215 PIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGK-------LLACDYENVRPD-----IVILGKALSG--  280 (427)
T ss_pred             ccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCc-------EEEeehhhcCCC-----eEEEeccccC--
Confidence            8899999855 555699999999999999999999999999886       223333333677     3347899964  


Q ss_pred             C-CeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009517          357 G-KRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFN  434 (533)
Q Consensus       357 G-~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  434 (533)
                      | ++++.+++   +++++..++...+ .|++.|+++++++.++|+           ++. -+.+.++..+..+.|++.|+
T Consensus       281 G~~Pvsavl~---~~~im~~~~pgeHgsTyggNpLg~~vaiAale-----------vi~-eekL~era~~lG~~l~~~L~  345 (427)
T KOG1402|consen  281 GVYPVSAVLA---DDDIMLNIKPGEHGSTYGGNPLGCAVAIAALE-----------VIV-EEKLVERAAKLGEILRDQLN  345 (427)
T ss_pred             CeeeeEEEEe---cHHHHhccCCCccccccCCChHHHHHHHHHHH-----------HHH-HHHHHHHHHHHHHHHHHHHH
Confidence            6 89999998   9999999888776 889999999999999984           333 26677888888999999999


Q ss_pred             cC----CC-ceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--
Q 009517          435 SL----EG-ITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--  507 (533)
Q Consensus       435 ~~----~g-~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--  507 (533)
                      ++    |+ ++.++..|-+....--+.+.        .+.+.+..+  ..+++.|++..|       .+.+.||+++-  
T Consensus       346 ~l~~~~p~~v~~VRGrGl~~ai~i~~~~~--------~~~~aw~~c--l~lk~~g~LAkp-------tH~~IiRfaPPL~  408 (427)
T KOG1402|consen  346 KLQKKFPHVVKEVRGRGLLNAIVINPSKT--------SGQDAWDVC--LALKENGLLAKP-------THGNIIRFAPPLV  408 (427)
T ss_pred             hccccccchhheeeccceEEEEEeccccc--------cchhHHHHH--HcccccccccCC-------CCCCeEEecCCcc
Confidence            87    33 46778888665543222111        122223333  557889999987       23348999994  


Q ss_pred             CCcCcHHHHHHHHHHHHH
Q 009517          508 PQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       508 ~~~e~i~~~~~~l~~~l~  525 (533)
                      ++++++++++++|++.+.
T Consensus       409 I~e~dl~eg~e~i~k~i~  426 (427)
T KOG1402|consen  409 ISEEDLREGIEAIEKTIA  426 (427)
T ss_pred             cCHHHHHHHHHHHHHHhc
Confidence            899999999999998764

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.96  E-value=4.6e-26  Score=232.84  Aligned_cols=301  Identities=13%  Similarity=0.135  Sum_probs=209.0

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCC
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEAT  248 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~  248 (533)
                      +.++++.+|++++        .+.+++++|+++++..++.++. ++||+|+++.+.|......++..|++++.++.+.++
T Consensus        53 ~~~~~e~lA~~~g--------~~~~~i~~g~~~a~~~~~~~l~-~~gd~Vl~~~~~h~s~~~~~~~~g~~~~~~~~~~~~  123 (370)
T TIGR02539        53 IHDFLEDLAEFLG--------MDEARVTHGAREGKFAVMHALC-KEGDWVVLDGLAHYTSYVAAERAGLNVKEVPHTGHP  123 (370)
T ss_pred             HHHHHHHHHHHhC--------CCceEEECChHHHHHHHHHHhh-CCCCEEEECCcccHHHHHHHHHcCCEEEEEecCCcc
Confidence            5677888888864        3467789999999999999998 899999999888665556788899999999987666


Q ss_pred             CCCCCHHHHHHHHHHHHh-cCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHH
Q 009517          249 GWGLETSEVKKQLEAAKA-KGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFK  327 (533)
Q Consensus       249 ~~~ld~~~l~~~i~~~~~-~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~  327 (533)
                      +|.+|+++|++++++..+ .+.++++|++++|+||||...+   +++|+++|+++|+++|+||+|..... +    .+..
T Consensus       124 ~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~---l~~i~~la~~~~~~livDea~~~g~~-~----~~~~  195 (370)
T TIGR02539       124 EYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPD---AGKVAKVCREKGVPLLLNCAYTVGRM-P----VSAK  195 (370)
T ss_pred             cCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccC---HHHHHHHHHHcCCeEEEECccccCCc-C----CCHH
Confidence            789999999999975321 1126789999999999999888   88899999999999999999986321 1    1111


Q ss_pred             HHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhc-c--------ccCChHHHHHHHHHc
Q 009517          328 KVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASV-N--------LCSNISGQILASLVM  398 (533)
Q Consensus       328 ~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~-~--------~~~~~~~q~a~~~~L  398 (533)
                          ..   +.+   +++.||||++ + +|.|+||+++   ++++++.+...... .        ......++.++..++
T Consensus       196 ----~~---~~d---i~v~s~sK~~-~-~~g~~G~l~~---~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al  260 (370)
T TIGR02539       196 ----EI---GAD---FIVGSGHKSM-A-ASGPCGVLGM---SEEWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMASF  260 (370)
T ss_pred             ----Hc---CCC---EEEeeCcccc-c-CCCCEEEEEE---CHHHHhhhcccccCCccceeeeecccccccHHHHHHHHH
Confidence                11   233   6679999999 6 4678999998   89999888765421 0        111112344444444


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEe--cCCceeEEecccCCCHH-HHHHHHhcCCCChHHH
Q 009517          399 SPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCN--KAEGAMYLFPRIQLPEK-AIKAAEAEKTVPDAFY  475 (533)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~--~~~gg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  475 (533)
                      .          ...++++.+.+.++. ++++++.|+++ |+.++  .+..+.|++++++.... ...      .......
T Consensus       261 ~----------~~~~~l~~~~~~~~~-~~~l~~~L~~~-g~~~~~~~~s~t~~v~~~~~~~~~~~~~------~~~~~~~  322 (370)
T TIGR02539       261 P----------HVVERVKRWDEEVKK-TRWFVAELEDI-GFIQLGQKPKEHDLVKFETPGFHEIAQK------HKRRGYF  322 (370)
T ss_pred             H----------HHHHHHHHHHHHHHH-HHHHHHHHHhC-CcEEEccCCCcCceEEEECCchhHHhhh------hccccHH
Confidence            2          112333334444444 45899999998 88763  35566677765431100 000      0011123


Q ss_pred             HHHHHHccceE-EEcCCCCCCCCCCceEEEEe-cCCcCcHHHHHHHHHHHHHH
Q 009517          476 CRRLLNATGIV-LVPGSGFGQVPGTWHFRCTI-LPQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       476 ~~~ll~~~gV~-v~pg~~f~~~~g~~~iRis~-~~~~e~i~~~~~~l~~~l~~  526 (533)
                      +.+.|.++||. +++    +   ..++|||++ ..+++++++++++|++++++
T Consensus       323 ~~~~L~e~GI~~ir~----~---~~~~iRis~~~~t~e~i~~l~~~L~~~~~~  368 (370)
T TIGR02539       323 LYEELKKRGIHGIRS----G---QTKYFKLSVYGLTKEQVEYVVDSFEEIVEE  368 (370)
T ss_pred             HHHHHHhCCCccccC----C---cceEEEEEecCCCHHHHHHHHHHHHHHHHh
Confidence            44666778997 554    2   123899996 47889999999999988764

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=99.96  E-value=2.7e-26  Score=237.79  Aligned_cols=323  Identities=18%  Similarity=0.204  Sum_probs=225.6

Q ss_pred             CHHHHHHHHHHHhcCCCCCcc-ccC----CCcccHHHHHHHHHHHHhhcCCCCC-CCCEEEcCChHHHHHHHHHHh----
Q 009517          141 SADSIERAWQILDQIPGRATG-AYS----HSQGIKGLRDTIAAGIEARDGFPAD-PNDIFLTDGASPAVHMMMQLL----  210 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~-~Y~----~~~G~~~lr~aia~~~~~~~g~~~~-~~~i~~t~G~~~al~~~~~~l----  210 (533)
                      |..+++++.+.+......... .|.    ...++.++|+.++++++      .+ +++|++|+|+++++..++..+    
T Consensus        31 p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~------~~~~~~v~~~~g~t~~l~~~~~~~~~~~  104 (403)
T TIGR01979        31 PQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFIN------AASDEEIVFTRGTTESINLVAYSWGDSN  104 (403)
T ss_pred             CHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhC------cCCCCeEEEeCCHHHHHHHHHHHhhhhc
Confidence            688888887776542210010 111    12246688899998875      34 579999999999999998875    


Q ss_pred             ccCCCCeEEEcCCcCcch----HHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccC
Q 009517          211 IRSENDGILCPIPQYPLY----SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV  286 (533)
Q Consensus       211 ~~~~gd~Vlv~~p~~~~~----~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~  286 (533)
                      . .+||+|+++++.|+..    ...+...|++++.++.++  ++.+|++.+++++++      ++++|++++|+||||.+
T Consensus       105 ~-~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~i~~------~~~lv~~~~~~~~tG~~  175 (403)
T TIGR01979       105 L-KAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLDD--DGTLDLDDLEKLLTE------KTKLVAITHVSNVLGTV  175 (403)
T ss_pred             C-CCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecCC--CCCCCHHHHHHHhcc------CCeEEEEEccccccccc
Confidence            3 6899999999987763    345567799999999873  457899999999976      79999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEe
Q 009517          287 LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVT  366 (533)
Q Consensus       287 ~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~  366 (533)
                      ++   +++|.++|+++|+++|+|++|....    .+ .++    .++   ..|   +++.|++|.+ |++|  +|++++ 
T Consensus       176 ~~---~~~i~~~~~~~~~~~ivD~a~~~g~----~~-~~~----~~~---~~d---~~~~s~~K~~-gp~G--~g~l~~-  233 (403)
T TIGR01979       176 NP---VEEIAKLAHQVGAKVLVDGAQAVPH----MP-VDV----QAL---DCD---FYVFSGHKMY-GPTG--IGVLYG-  233 (403)
T ss_pred             CC---HHHHHHHHHHcCCEEEEEchhhcCc----cc-cCc----ccc---CCC---EEEEeccccc-CCCC--ceEEEE-
Confidence            99   8899999999999999999996421    11 111    111   233   7789999977 7666  888887 


Q ss_pred             cCCHHHHHHHHHhhh----------------------ccccCChHHHHHHHHHcCCCCCCChhHHHHHH-HHHHHHHHHH
Q 009517          367 GFSAEVREQIYKVAS----------------------VNLCSNISGQILASLVMSPPKVGDESYESYCA-ERDGILSSLA  423 (533)
Q Consensus       367 ~~~~~~~~~l~~~~~----------------------~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~-~~~~~~~~~~  423 (533)
                        ++++++.+.....                      ...+++.....++..+++          .+.+ ..+.+.++..
T Consensus       234 --~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~----------~~~~~g~~~~~~~~~  301 (403)
T TIGR01979       234 --KEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAID----------YLEAIGLENIEAHEH  301 (403)
T ss_pred             --chHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHH----------HHHHhCHHHHHHHHH
Confidence              7777766532110                      011334444455555442          1111 1456778888


Q ss_pred             HHHHHHHHHHhcCCCceEecCC-----ceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCC---
Q 009517          424 RRAKTLEDAFNSLEGITCNKAE-----GAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ---  495 (533)
Q Consensus       424 ~~~~~l~~~L~~~~g~~~~~~~-----gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~---  495 (533)
                      +.++.+.+.|++++|++++.|.     +++..| .++  .          . +..+ +.+.|+++||.+.+|..+..   
T Consensus       302 ~l~~~l~~~l~~~~g~~~~~~~~~~~~~~~v~~-~~~--~----------~-~~~~-~~~~L~~~gI~v~~g~~~~~~~~  366 (403)
T TIGR01979       302 ELTAYALERLGEIPGLRIYGPRDAEDRGGIISF-NVE--G----------V-HPHD-VGTILDEEGIAVRSGHHCAQPLM  366 (403)
T ss_pred             HHHHHHHHHHhcCCCEEEeCCCCccccCceEEE-EeC--C----------c-CHHH-HHHHHhhCCEEEcchhhhhHHHH
Confidence            8899999999988889887654     566554 232  1          1 1222 34677889999998763311   


Q ss_pred             --CCCCceEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 009517          496 --VPGTWHFRCTIL--PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       496 --~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~~  527 (533)
                        ....+++|||++  .++++++++++.|+++++.+
T Consensus       367 ~~~~~~~~iRiS~~~~~t~~di~~l~~~l~~~~~~~  402 (403)
T TIGR01979       367 RRFGVPATCRASFYIYNTEEDIDALVEALKKVRKFF  402 (403)
T ss_pred             HHhCCCCEEEEEeccCCCHHHHHHHHHHHHHHHHHh
Confidence              001238999997  68899999999999877654

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>PRK07179 hypothetical protein; Provisional

Probab=99.96  E-value=7.5e-26  Score=234.47  Aligned_cols=322  Identities=14%  Similarity=0.103  Sum_probs=218.9

Q ss_pred             CHHHHHHHHHHHhcCCCC---CccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCe
Q 009517          141 SADSIERAWQILDQIPGR---ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDG  217 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~---~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~  217 (533)
                      .+++++++.+++.+....   +...+.......+|++.+|++++        .+.+++++|+++|+..+++++. .+||.
T Consensus        70 ~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g--------~~~~~~~~sG~~An~~~l~~l~-~~g~~  140 (407)
T PRK07179         70 HPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFTG--------FESCLLCQSGWAANVGLLQTIA-DPNTP  140 (407)
T ss_pred             CHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHhC-CCCCE
Confidence            688999999988764211   11112222235778888888864        3567889999999999999998 78999


Q ss_pred             EEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHH
Q 009517          218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD  297 (533)
Q Consensus       218 Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~  297 (533)
                      |++..+.|......+...|++++.++       ..|++++++++++.     ++++|++++++||||.+++   +++|++
T Consensus       141 v~~~~~~h~s~~~~~~~~g~~~~~~~-------~~d~~~l~~~l~~~-----~~~lV~v~~v~n~tG~i~p---l~~I~~  205 (407)
T PRK07179        141 VYIDFFAHMSLWEGVRAAGAQAHPFR-------HNDVDHLRRQIERH-----GPGIIVVDSVYSTTGTIAP---LADIVD  205 (407)
T ss_pred             EEEECCcCHHHHHHHHHCCCeEEEec-------CCCHHHHHHHHHhc-----CCeEEEECCCCCCCCcccc---HHHHHH
Confidence            99999999888877888888876654       24899999999762     4778888899999999999   889999


Q ss_pred             HHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHH
Q 009517          298 FCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY  377 (533)
Q Consensus       298 l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~  377 (533)
                      +|+++|+++|+||+|....++.. . ..+   ...++ ..+. ..+++.|+||++ |   .|+||+++   ++++++.+.
T Consensus       206 l~~~~~~~livDea~~~g~~g~~-g-~g~---~~~~~-~~~~-vdi~~~S~sK~~-g---~~~G~l~~---~~~~~~~~~  271 (407)
T PRK07179        206 IAEEFGCVLVVDESHSLGTHGPQ-G-AGL---VAELG-LTSR-VHFITASLAKAF-A---GRAGIITC---PRELAEYVP  271 (407)
T ss_pred             HHHHcCCEEEEECcccccCcCCC-C-Cch---HHhcC-CCCC-CCEEEeechHhh-h---ccCeEEEe---CHHHHHHHH
Confidence            99999999999999985443211 1 111   11111 0111 137789999988 4   37999998   888888776


Q ss_pred             Hhhh--cc-ccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEeccc
Q 009517          378 KVAS--VN-LCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRI  454 (533)
Q Consensus       378 ~~~~--~~-~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~  454 (533)
                      ....  .. .+.++...+++.++++           ..+..+..+++++++++++++.|+++ |+.+. +.+. ++++.+
T Consensus       272 ~~~~~~~~~~t~~~~~~aa~~aal~-----------~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~-~~~~-i~~l~~  337 (407)
T PRK07179        272 FVSYPAIFSSTLLPHEIAGLEATLE-----------VIESADDRRARLHANARFLREGLSEL-GYNIR-SESQ-IIALET  337 (407)
T ss_pred             HhCcCeeeCCCCCHHHHHHHHHHHH-----------HHhcCHHHHHHHHHHHHHHHHHHHHc-CCCCC-CCCC-EEEEEe
Confidence            5432  11 2223333333334442           22333456788999999999999998 87765 4444 444333


Q ss_pred             CCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 009517          455 QLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~~  527 (533)
                      ..+.             ....+...|.++||.+..-...+...+.+++||++.  +++++|++++++|++++++.
T Consensus       338 ~~~~-------------~~~~~~~~L~~~GI~~~~~~~p~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~~~~~  399 (407)
T PRK07179        338 GSER-------------NTEVLRDALEERNVFGAVFCAPATPKNRNLIRLSLNADLTASDLDRVLEVCREARDEV  399 (407)
T ss_pred             CCHH-------------HHHHHHHHHHHCCceEeeecCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHhh
Confidence            2110             122244566778998432100011123459999996  79999999999999988764

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=99.96  E-value=1.5e-26  Score=233.97  Aligned_cols=319  Identities=13%  Similarity=0.083  Sum_probs=219.4

Q ss_pred             cCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCC
Q 009517          137 QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND  216 (533)
Q Consensus       137 ~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd  216 (533)
                      |.++|+.+++++.+.+..     ...|.+..+..++++.++++++        ++++++++|+++++..+++.++ ++||
T Consensus         7 ~~~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~l~~~~a~~~g--------~~~~~~~~~gt~a~~~~~~~l~-~~gd   72 (338)
T cd06502           7 VTGPTPEMLEAMAAANVG-----DDVYGEDPTTAKLEARAAELFG--------KEAALFVPSGTAANQLALAAHT-QPGG   72 (338)
T ss_pred             CCCCCHHHHHHHHhcccC-----CcccCCCHHHHHHHHHHHHHhC--------CCeEEEecCchHHHHHHHHHhc-CCCC
Confidence            444588888888776532     2357666667888888888863        4578888888899999999998 8999


Q ss_pred             eEEEcCCcCcchHH---HHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHh-cCCCeeEEEEeCCCCCCccCCCHHHH
Q 009517          217 GILCPIPQYPLYSA---SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKA-KGITVRALVVINPGNPTGQVLAEENQ  292 (533)
Q Consensus       217 ~Vlv~~p~~~~~~~---~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~-~g~~~~~iil~~p~NPtG~~~s~~~l  292 (533)
                      +|+++.|+|..+..   .....|++++.++.+.   +.+|+++|++++++... ..+++++|++++|+|| |.+++.+++
T Consensus        73 ~v~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~---~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~~~~~~l  148 (338)
T cd06502          73 SVICHETAHIYTDEAGAPEFLSGVKLLPVPGEN---GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTVYPLDEL  148 (338)
T ss_pred             eEEEecCcceeeecCCcHHHHcCceEEeecCCC---CcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC-ccccCHHHH
Confidence            99999999876432   3455899999998742   57999999999975210 0125889999999998 667799999


Q ss_pred             HHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEE-EEEecCCHH
Q 009517          293 RAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGY-MEVTGFSAE  371 (533)
Q Consensus       293 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~-v~~~~~~~~  371 (533)
                      ++|+++|+++|+++|+||+|..+......  .++.....     ..+   +++.|+||++ |++|   |+ +++   +++
T Consensus       149 ~~i~~~~~~~~~~livDea~~~~~~~~~~--~~~~~~~~-----~~d---~~~~s~sK~~-~~~~---g~~~~~---~~~  211 (338)
T cd06502         149 KAISALAKENGLPLHLDGARLANAAAALG--VALKTYKS-----GVD---SVSFCLSKGG-GAPV---GAVVVG---NRD  211 (338)
T ss_pred             HHHHHHHHHcCCeEeechHHHHHHHHhcC--CCHHHHHh-----cCC---EEEEeccccC-CCcc---ceEEEC---CHH
Confidence            99999999999999999998643221111  12222211     233   4577999998 6676   44 444   888


Q ss_pred             HHHHHHHhhh---ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCcee
Q 009517          372 VREQIYKVAS---VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAM  448 (533)
Q Consensus       372 ~~~~l~~~~~---~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~  448 (533)
                      +++.+.....   .+++.+.+.+.++...|+...        +    .+..+++.++++++.+.|+++ |+.+.++.+++
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~~~--------~----~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~  278 (338)
T cd06502         212 FIARARRRRKQAGGGMRQSGFLAAAGLAALENDL--------W----LRRLRHDHEMARRLAEALEEL-GGLESEVQTNI  278 (338)
T ss_pred             HHHHHHHHHHHhCCChhhHHHHHHHHHHHhcCch--------H----HHHHHHHHHHHHHHHHHHHhc-CCCcccccCCe
Confidence            9988876643   233456677777777775321        1    234456667778999999988 66666667666


Q ss_pred             EEecccCCCHHHHHHHHhcCCCChHHHHHHHH--HccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHH
Q 009517          449 YLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLL--NATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTD  522 (533)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll--~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~  522 (533)
                      .++ .++....           ....+..++.  .++||.+.+...       ++|||++.  +++++++++++++++
T Consensus       279 ~~v-~~~~~~~-----------~~~~l~~~l~~~~~~gi~~~~~~~-------~~lRi~~~~~~~~~~i~~~~~~l~~  337 (338)
T cd06502         279 VLL-DPVEANA-----------VFVELSKEAIERRGEGVLFYAWGE-------GGVRFVTHWDTTEEDVDELLSALKA  337 (338)
T ss_pred             EEE-ecCCccH-----------HHHHHHHHHHHhhhCCEEEEecCC-------CeEEEEeecCCCHHHHHHHHHHHhc
Confidence            543 2321100           0111122221  257999887321       38999996  688899999998864

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>PRK07049 methionine gamma-lyase; Validated

Probab=99.96  E-value=6.5e-26  Score=234.08  Aligned_cols=230  Identities=16%  Similarity=0.156  Sum_probs=178.0

Q ss_pred             cccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHH----HHhC
Q 009517          161 GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI----ALHG  236 (533)
Q Consensus       161 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~----~~~g  236 (533)
                      ..|+.+. ...|++++|++.+        .+++++++||++|+..++.+++ ++||.|+++.|+|.++...+    ...|
T Consensus        78 ~R~~~Pt-~~~Le~~lA~leg--------~~~~iv~~sG~~Ai~~~l~al~-~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~G  147 (427)
T PRK07049         78 SRFNHPN-SEIVEDRLAVYEG--------AESAALFSSGMSAIATTLLAFV-RPGDVILHSQPLYGGTETLLAKTFRNFG  147 (427)
T ss_pred             cCCCCcC-HHHHHHHHHHHhC--------CCcEEEEccHHHHHHHHHHHHh-CCCCEEEEcCCCcccHHHHHHHHHHhcC
Confidence            4566555 6899999999864        4578999999999999999998 89999999999999997664    4578


Q ss_pred             CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHH---cCCEEEEccccc
Q 009517          237 GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK---EGLVLLADEVYQ  313 (533)
Q Consensus       237 ~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~---~~~~lI~De~y~  313 (533)
                      ++++.++.      +.|++.+++++.+... .+++++|++++|+||||.+++.+++.+|++.|++   +++++|+||+|.
T Consensus       148 i~~v~~~~------~~d~~~l~~~l~~~~~-~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~  220 (427)
T PRK07049        148 VGAVGFAD------GLSEAAIGAAAEAAAA-KGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLL  220 (427)
T ss_pred             cEEEEEeC------CCCHHHHHHHHHhhcc-CCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCcc
Confidence            88777762      3578888888764211 1268999999999999999998888888887654   689999999987


Q ss_pred             cccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHH
Q 009517          314 ENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQI  392 (533)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~  392 (533)
                      ...+..  +   +     ..   ..   .|++.||||.++|++|+|+||+++   ++++++.+..... ...+.+++.+.
T Consensus       221 ~~~~~~--p---l-----~~---g~---divv~S~SK~~gG~~glr~G~vv~---~~~l~~~l~~~~~~~g~~ls~~~a~  281 (427)
T PRK07049        221 GPVFQK--P---L-----EH---GA---DLSVYSLTKYVGGHSDLVAGAVLG---RKALIRQVRALRSAIGTQLDPHSCW  281 (427)
T ss_pred             ccccCC--c---c-----cc---CC---CEEEEcCceeecCCCCcEEEEEEC---CHHHHHHHHHHHHhcCCCCCHHHHH
Confidence            643211  1   1     11   12   378899999996589999999997   8899998887765 45667888888


Q ss_pred             HHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Q 009517          393 LASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGIT  440 (533)
Q Consensus       393 a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~  440 (533)
                      ++...|+              .+....++..++++.+.+.|++.|++.
T Consensus       282 l~~r~L~--------------tl~~R~~~~~~~a~~la~~L~~~p~V~  315 (427)
T PRK07049        282 MLGRSLE--------------TLVLRMERANRNARAVAEFLRDHPKVE  315 (427)
T ss_pred             HHHcCCC--------------hHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            8877764              233444556888999999999887654

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=99.95  E-value=1.1e-26  Score=241.15  Aligned_cols=376  Identities=11%  Similarity=0.046  Sum_probs=238.5

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      ++.++++...++.||++      ++|+..|....                      ..+++    ++.+++++.+++.+.
T Consensus        26 ~~~~~~G~~l~d~dG~~------~lD~~~g~~~~----------------------~lGh~----~~~i~~a~~~~~~~~   73 (425)
T PRK08088         26 FADRAENCRVWDVEGRE------YLDFAGGIAVL----------------------NTGHL----HPKVVAAVEAQLKKL   73 (425)
T ss_pred             eEEeeeeCEEEeCCCCE------EEEcCCchhhc----------------------CCCCC----CHHHHHHHHHHHhhC
Confidence            45566666666667666      88887765443                      22222    688999999999863


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC-CCCeEEEcCCcCcchHHHHHH
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS-ENDGILCPIPQYPLYSASIAL  234 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~-~gd~Vlv~~p~~~~~~~~~~~  234 (533)
                      .    +.+.+..+.+ ...++|+++....+.+. .++++++++|++|++.+++.++.. ...+|+..+++|++....+..
T Consensus        74 ~----~~~~~~~~~~-~~~~la~~l~~~~~~~~-~~~~~f~~sGsea~e~Alklar~~~~r~~iv~~~~~yHG~~~~~~~  147 (425)
T PRK08088         74 S----HTCFQVLAYE-PYLELCEKMNQKVPGDF-AKKTLLVTTGSEAVENAVKIARAATKRSGVIAFTGAYHGRTHYTLA  147 (425)
T ss_pred             C----CccccccCCH-HHHHHHHHHHHhCCCCC-CCEEEEeCCcHHHHHHHHHHHHHHhCCCeEEEECCccCCccHHHHH
Confidence            2    1222222223 33467777776544222 247888888889999988877522 235678889999998876666


Q ss_pred             hCCeEEE----------------EecCCCCCCCC--CHHHHHHHHHHHHhcCCCeeEEEEeC-CCCCCccCCCHHHHHHH
Q 009517          235 HGGTLVP----------------YYLDEATGWGL--ETSEVKKQLEAAKAKGITVRALVVIN-PGNPTGQVLAEENQRAI  295 (533)
Q Consensus       235 ~g~~~~~----------------v~~~~~~~~~l--d~~~l~~~i~~~~~~g~~~~~iil~~-p~NPtG~~~s~~~l~~i  295 (533)
                      .+....+                +|.+. .+...  +++.+++.++... .+.++++|+++. .+|++.+.++++.+++|
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~l~~~l~~~~-~~~~~aavi~Epi~~~~G~~~~~~~~~~~l  225 (425)
T PRK08088        148 LTGKVNPYSAGMGLMPGHVYRALYPCPL-HGVSEDDAIASIERIFKNDA-APEDIAAIIIEPVQGEGGFYAASPAFMQRL  225 (425)
T ss_pred             hhCCCCccccCCCCCCCCcEEcCCCccc-cCccHHHHHHHHHHHHHhcc-CCCceEEEEECcccCCCCCcCCCHHHHHHH
Confidence            5432111                11111 11111  1456777775311 123677777773 47887788999999999


Q ss_pred             HHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHH
Q 009517          296 VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQ  375 (533)
Q Consensus       296 ~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~  375 (533)
                      +++|++||+++|+||+|+++.+.+.  ..++..  .++   .++     +.||||.+ + +|+|+||+++   ++++++.
T Consensus       226 ~~l~~~~~~~lI~Dev~~g~g~~g~--~~~~~~--~~~---~pd-----i~s~sK~l-~-~G~rig~v~~---~~~~~~~  288 (425)
T PRK08088        226 RALCDEHGIMLIADEVQTGAGRTGT--LFAMEQ--MGV---AAD-----LTTFAKSI-A-GGFPLAGVTG---RAEVMDA  288 (425)
T ss_pred             HHHHHHcCCEEEEeccccCCCcCcc--hhHHhh--cCC---CCC-----EEEEeccc-c-CCCcceeeEe---cHHHHhh
Confidence            9999999999999999999766542  222111  111   344     78999999 5 7999999998   9999988


Q ss_pred             HHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEeccc
Q 009517          376 IYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRI  454 (533)
Q Consensus       376 l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~  454 (533)
                      +..... .+++++++.|+++..+|+...     .+   +.++++++..+.+++.+.+.+.+.|.+..+.+. |+++|+.+
T Consensus       289 ~~~~~~~~t~~~~~~~~~a~~~~l~~~~-----~~---~~~~~~~~~~~~~~~~l~~l~~~~~~~~~v~g~-G~~~~l~l  359 (425)
T PRK08088        289 IAPGGLGGTYAGNPIACAAALAVLKVFE-----QE---NLLQKANALGEKLKDGLLAIAEKHPEIGDVRGL-GAMIAIEL  359 (425)
T ss_pred             cCCCCCCCCCCcCHHHHHHHHHHHHHHH-----hc---CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecc-ceEEEEEE
Confidence            865544 678899999999999986321     11   223334444344444454444445544444455 67789776


Q ss_pred             CCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 009517          455 QLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~~  527 (533)
                      ..+..    ...........+. ..+.++||.+.|+..|+     +.|||+++  .++++|++++++|++++++.
T Consensus       360 ~~~~~----~~~p~~~~~~~l~-~~~~~~Gv~~~~~~~~~-----~~iRl~~~~~~t~~ei~~~i~~l~~~l~~~  424 (425)
T PRK08088        360 FEDGD----HSKPNAKLTAQIV-ARARDKGLILLSCGPYY-----NVLRILVPLTIEDAQIRQGLEIIAQCFDEA  424 (425)
T ss_pred             ecCCC----CCCCCHHHHHHHH-HHHHhCCCEEecCCCCC-----CEEEEECCCCcCHHHHHHHHHHHHHHHHhh
Confidence            31100    0000000123333 44556899998865543     38999997  67899999999999998753

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=99.95  E-value=3.6e-26  Score=236.59  Aligned_cols=314  Identities=12%  Similarity=0.131  Sum_probs=215.9

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC-------
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS-------  213 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~-------  213 (533)
                      ++++++++.+++.+...  ...+.......+|.+.++++.    +    .++++++++|++|++.+++.++..       
T Consensus        59 ~~~i~~a~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~----~----~~~~~~~~SGs~A~e~al~~a~~~~~~~~g~  128 (401)
T PRK00854         59 HPKILAAMVEQAGRLTL--TSRAFRNDQLAPLYEELAALT----G----SHKVLPMNSGAEAVETAIKAVRKWGYEVKGV  128 (401)
T ss_pred             CHHHHHHHHHHHhhccc--cccccCCHHHHHHHHHHHhhC----C----CCEEEEeCCcHHHHHHHHHHHHHHHHhccCC
Confidence            58899999999886432  111122223455666666553    2    358999999999999999998511       


Q ss_pred             -CC-CeEEEcCCcCcchHHHHHHhCCe-------------EEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeC
Q 009517          214 -EN-DGILCPIPQYPLYSASIALHGGT-------------LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVIN  278 (533)
Q Consensus       214 -~g-d~Vlv~~p~~~~~~~~~~~~g~~-------------~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~  278 (533)
                       +| ++|++..-+|++....+...+..             +..++       ..|++.+++.+.+      ++++|++++
T Consensus       129 ~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~d~~~le~~i~~------~~~aii~e~  195 (401)
T PRK00854        129 PEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVP-------FGDAEALEAAITP------NTVAFLVEP  195 (401)
T ss_pred             CCCCceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEeC-------CCCHHHHHHHhCC------CeEEEEEcc
Confidence             24 68999998888865444433321             11221       1388999999865      799999999


Q ss_pred             CCCCCccCCC-HHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCC
Q 009517          279 PGNPTGQVLA-EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG  357 (533)
Q Consensus       279 p~NPtG~~~s-~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G  357 (533)
                      |+||||.+++ .++|++|+++|++||+++|+||+|+++.+.|.  ...  ....++   .+|   ++  .++|.++| ..
T Consensus       196 ~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~--~~~--~~~~g~---~~D---~~--~~~K~l~g-g~  262 (401)
T PRK00854        196 IQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGK--LLA--EEHEGI---EAD---VT--LIGKALSG-GF  262 (401)
T ss_pred             ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCch--HhH--HhhcCC---CCC---EE--EecccccC-Cc
Confidence            9999999887 45699999999999999999999998766542  111  101111   355   22  35799953 23


Q ss_pred             CeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 009517          358 KRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL  436 (533)
Q Consensus       358 ~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  436 (533)
                      +|+||+++   ++++++.+..... .+++++++.++++.+.|+           ..+. ..+.+.++++++++.+.|+++
T Consensus       263 ~~ig~v~~---~~~~~~~l~~~~~~~t~~~~~~~~aa~~a~L~-----------~l~~-~~~~~~~~~~~~~l~~~L~~~  327 (401)
T PRK00854        263 YPVSAVLS---NSEVLGVLKPGQHGSTFGGNPLACAVARAALK-----------VLTE-EGMIENAAEMGAYFLEGLRSI  327 (401)
T ss_pred             cCeEEEEE---cHHHHhcccCCCCCCCCCcCHHHHHHHHHHHH-----------HHHH-cCHHHHHHHHHHHHHHHHHhh
Confidence            79999998   9999887765433 567789999999988874           1121 335677888889999999887


Q ss_pred             CC--ceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCc
Q 009517          437 EG--ITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDK  512 (533)
Q Consensus       437 ~g--~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~  512 (533)
                      ..  +..+.+.|.++.+.-.. +.           .....+++.+ .++||.+.+.       +.+++|+++.  .++++
T Consensus       328 ~~~~~~~~~g~g~~~~i~~~~-~~-----------~~~~~~~~~L-~~~GV~v~~~-------~~~~lR~~p~~~~t~e~  387 (401)
T PRK00854        328 RSNIVREVRGRGLMLAVELEP-EA-----------GGARQYCEAL-KERGLLAKDT-------HDHTIRLAPPLVITREQ  387 (401)
T ss_pred             ccCceEEEeccceEEEEEEec-Cc-----------hhHHHHHHHH-HHCCeEEecC-------CCCEEEEeCCcccCHHH
Confidence            21  23346777777653212 10           0134455554 4579999752       2238999984  89999


Q ss_pred             HHHHHHHHHHHHH
Q 009517          513 IPAIVTRLTDFHK  525 (533)
Q Consensus       513 i~~~~~~l~~~l~  525 (533)
                      |++++++|++++.
T Consensus       388 i~~~i~~l~~~l~  400 (401)
T PRK00854        388 VDWALEQIAKVLA  400 (401)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998763

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=99.95  E-value=1.5e-25  Score=231.94  Aligned_cols=326  Identities=16%  Similarity=0.151  Sum_probs=217.2

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCccc----HHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHh---ccC
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGI----KGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL---IRS  213 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~----~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l---~~~  213 (533)
                      |+.+++++.+.+..........|....+.    .++|+.++++++      .++++|++++|+++++..++.++   . +
T Consensus        30 p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~------~~~~~v~~~~~~t~~l~~~~~~~~~~~-~  102 (397)
T TIGR01976        30 PQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLN------ADPPEVVFGANATSLTFLLSRAISRRW-G  102 (397)
T ss_pred             CHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcC------CCCCeEEEeCCHHHHHHHHHHHHHhcC-C
Confidence            78899998888765322112346554443    466666666654      44567999999999998877776   4 6


Q ss_pred             CCCeEEEcCCcCcchH----HHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCH
Q 009517          214 ENDGILCPIPQYPLYS----ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAE  289 (533)
Q Consensus       214 ~gd~Vlv~~p~~~~~~----~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~  289 (533)
                      +||+|++++|.|....    ..++..|++++.++.+++ ++.+|++++++++++      ++++|++++|+||||.+.+ 
T Consensus       103 ~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~l~~~i~~------~~~lv~i~~~~n~tG~~~~-  174 (397)
T TIGR01976       103 PGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEA-TGELHPDDLASLLSP------RTRLVAVTAASNTLGSIVD-  174 (397)
T ss_pred             CCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEecccc-CCCcCHHHHHHhcCC------CceEEEEeCCCCCCCccCC-
Confidence            8999999999887643    455678999999998753 467899999999976      7899999999999999988 


Q ss_pred             HHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCC
Q 009517          290 ENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFS  369 (533)
Q Consensus       290 ~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~  369 (533)
                        +++|.++|+++|+++|+|+++..    +..+ ..+    .++   ..|   +++.|++|.+    |.|+||+++   +
T Consensus       175 --~~~i~~~~~~~~~~~ivD~a~~~----~~~~-~~~----~~~---~~d---~~~~s~~K~~----g~~~G~l~~---~  230 (397)
T TIGR01976       175 --LAAITELVHAAGALVVVDAVHYA----PHGL-IDV----QAT---GAD---FLTCSAYKFF----GPHMGILWG---R  230 (397)
T ss_pred             --HHHHHHHHHHcCCEEEEehhhhc----cccC-CCH----HHc---CCC---EEEEechhhc----CCceEEEEE---c
Confidence              99999999999999999999742    2111 121    112   233   5678999976    457999988   8


Q ss_pred             HHHHHHHHHhhh-c----------cccCChHHHHHH---HHHcCCCCC-CC-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009517          370 AEVREQIYKVAS-V----------NLCSNISGQILA---SLVMSPPKV-GD-ESYESYCAERDGILSSLARRAKTLEDAF  433 (533)
Q Consensus       370 ~~~~~~l~~~~~-~----------~~~~~~~~q~a~---~~~L~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~L  433 (533)
                      +++++.+..... .          ..+++.....++   ...+..... .. .......+..+.+.++..+.++++++.|
T Consensus       231 ~~~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L  310 (397)
T TIGR01976       231 PELLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGL  310 (397)
T ss_pred             HHHHhhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            888877654321 0          012232332222   222221100 00 0001111124566777788888999999


Q ss_pred             hcCCCceEecC-----CceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCC--------CCCCCc
Q 009517          434 NSLEGITCNKA-----EGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFG--------QVPGTW  500 (533)
Q Consensus       434 ~~~~g~~~~~~-----~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~--------~~~g~~  500 (533)
                      +++++++++.+     .+++..+ .+.  .          . +...++ +.|.++||.+..|..+.        .+...+
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~-~~~--~----------~-~~~~l~-~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~  375 (397)
T TIGR01976       311 SDLPGVTLYGVARLAARVPTVSF-TVH--G----------L-PPQRVV-RRLADQGIDAWAGHFYAVRLLRRLGLNDEGG  375 (397)
T ss_pred             hcCCCEEEeCCCCccCCCceEEE-EeC--C----------c-CHHHHH-HHHHHCCeEEEeCccchHHHHHHhCCCCCCC
Confidence            98866888764     4554332 222  1          1 123333 55677899999886653        122334


Q ss_pred             eEEEEec--CCcCcHHHHHHHH
Q 009517          501 HFRCTIL--PQEDKIPAIVTRL  520 (533)
Q Consensus       501 ~iRis~~--~~~e~i~~~~~~l  520 (533)
                      +||||+.  .++++++++++.|
T Consensus       376 ~iRis~~~~~t~~di~~l~~~l  397 (397)
T TIGR01976       376 VVRVGLAHYNTAEEVDRLLEAL  397 (397)
T ss_pred             eEEEEeeccCCHHHHHHHHHhC
Confidence            8999995  7888898888764

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.95  E-value=3.1e-25  Score=226.32  Aligned_cols=330  Identities=13%  Similarity=0.111  Sum_probs=215.6

Q ss_pred             CCHHHHHHHHHHHhcCCCCCc-cccCC---CcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCC
Q 009517          140 FSADSIERAWQILDQIPGRAT-GAYSH---SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN  215 (533)
Q Consensus       140 ~p~~v~~~~~~~~~~~~~~~~-~~Y~~---~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g  215 (533)
                      +.+.+++++.+......+.+. .+...   ..-..++++++|++++      .  +++++|+|+++++..++..++ .+|
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g------~--~~i~~~~g~t~al~~~l~~~~-~~g   83 (361)
T cd06452          13 LTPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLG------M--DEARVTPGAREGKFAVMHSLC-EKG   83 (361)
T ss_pred             CCHHHHHHHHHHhcccCCccccccccccccCchHHHHHHHHHHHcC------C--ceEEEeCCHHHHHHHHHHHhc-CCC
Confidence            367788887776643222111 11111   1125688888888864      2  789999999999999999998 799


Q ss_pred             CeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhc-CCCeeEEEEeCCCCCCccCCCHHHHHH
Q 009517          216 DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAK-GITVRALVVINPGNPTGQVLAEENQRA  294 (533)
Q Consensus       216 d~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~-g~~~~~iil~~p~NPtG~~~s~~~l~~  294 (533)
                      |+|+++.++|......+...|++++.++.+.+.+|.+|++.+++++++..+. ++++++|++++|+||||...+   +++
T Consensus        84 d~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~---~~~  160 (361)
T cd06452          84 DWVVVDGLAHYTSYVAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHD---AKK  160 (361)
T ss_pred             CEEEEcCCcchHHHHHHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeecc---HHH
Confidence            9999999988777677888999999999987656899999999999753211 236899999999999998866   889


Q ss_pred             HHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHH
Q 009517          295 IVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVRE  374 (533)
Q Consensus       295 i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~  374 (533)
                      |+++|+++|+++|+|++|..    +..+ .+..    ++   ..+   +++.|+||++ + ++.|+||+++   ++++++
T Consensus       161 i~~~~~~~~~~vivD~a~~~----g~~~-~~~~----~~---~~d---~~~~s~~K~l-~-~~~~~G~l~~---~~~~~~  220 (361)
T cd06452         161 IAKVCHEYGVPLLLNGAYTV----GRMP-VSGK----EL---GAD---FIVGSGHKSM-A-ASAPIGVLAT---TEEWAD  220 (361)
T ss_pred             HHHHHHHcCCeEEEECCccc----CCcC-CCHH----Hc---CCC---EEEecCCccc-c-CCCCeEEEEE---CHHHHH
Confidence            99999999999999999974    2111 1111    11   223   7899999999 5 4569999998   888888


Q ss_pred             HHHHhhhc------c---ccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEec--
Q 009517          375 QIYKVASV------N---LCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNK--  443 (533)
Q Consensus       375 ~l~~~~~~------~---~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~--  443 (533)
                      .+.+....      .   .+.....+.++.+.+.          ...+.++.. .+..++++++++.|++++|++++.  
T Consensus       221 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~----------~~~~~~~~~-~~~~~~~~~l~~~L~~l~g~~v~~~~  289 (361)
T cd06452         221 IVFRTSQMFKIKEVELLGCTLRGAPLVTLMASFP----------HVKERVKRW-DEEVEKARWFVAELEKIEGIKQLGEK  289 (361)
T ss_pred             HHhccccccccceeeeeccccCchHHHHHHHHHH----------HHHHHHHHH-HHHHHHHHHHHHHHhcCCCeEEECCC
Confidence            87654321      0   1111122333333331          112222222 222344578999999998988762  


Q ss_pred             -CCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec-CCcCcHHHHHHHHH
Q 009517          444 -AEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-PQEDKIPAIVTRLT  521 (533)
Q Consensus       444 -~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~~~~l~  521 (533)
                       ...++ +.++.+   .........+ .....+. +.|.++||.+.+   .+   ..+++|++.. .++++++.++++|+
T Consensus       290 ~~~~n~-~~~~~~---~~~~~~~~~~-~~~~~~~-~~L~~~gI~~~~---~~---~~~~~ri~~~g~~~e~~~~l~~al~  357 (361)
T cd06452         290 PKNHDL-MFFETP---SFDEIAKKHK-RRGYFLY-SELKKRGIHGIK---PG---LTRYFKLSTYGLTWEQVEYVVDAFK  357 (361)
T ss_pred             CCCCce-EEEEcC---Ccchhhhhcc-ccchhHH-HHHHHcCceEEc---CC---CceEEEEEecCCCHHHHHHHHHHHH
Confidence             23333 332222   1100000000 1112334 445667998532   11   1238999994 68899999999988


Q ss_pred             HHH
Q 009517          522 DFH  524 (533)
Q Consensus       522 ~~l  524 (533)
                      +++
T Consensus       358 ~~~  360 (361)
T cd06452         358 EIA  360 (361)
T ss_pred             HHh
Confidence            654

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=99.95  E-value=1.3e-25  Score=232.61  Aligned_cols=323  Identities=14%  Similarity=0.146  Sum_probs=226.5

Q ss_pred             CHHHHHHHHHHHhcCCCCC-ccccC----CCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHh---cc
Q 009517          141 SADSIERAWQILDQIPGRA-TGAYS----HSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL---IR  212 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~-~~~Y~----~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l---~~  212 (533)
                      |..+++++.+.+....... ...|.    -..-..++|+++|++++.     .++++|++|+|+++++..+++.+   ..
T Consensus        36 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~-----~~~~~v~~t~g~t~~l~~~~~~~~~~~~  110 (406)
T PRK09295         36 PSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINA-----RSAEELVFVRGTTEGINLVANSWGNSNV  110 (406)
T ss_pred             CHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCc-----CCCCeEEEeCCHHHHHHHHHHHhhhhcC
Confidence            7889999888776422100 11111    012256788888888752     14689999999999999998864   22


Q ss_pred             CCCCeEEEcCCcCcc----hHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCC
Q 009517          213 SENDGILCPIPQYPL----YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLA  288 (533)
Q Consensus       213 ~~gd~Vlv~~p~~~~----~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s  288 (533)
                      ++||+|+++++.|++    +...++..|++++.++.+.  ++.+|++++++++++      ++++|++++|+||||.+++
T Consensus       111 ~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~------~t~lv~l~~~~n~tG~~~~  182 (406)
T PRK09295        111 RAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLNP--DGTLQLETLPALFDE------RTRLLAITHVSNVLGTENP  182 (406)
T ss_pred             CCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCC--CCCCCHHHHHHhcCC------CcEEEEEecchhcccccCC
Confidence            689999999988764    4455667899999999874  457899999999976      7999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecC
Q 009517          289 EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGF  368 (533)
Q Consensus       289 ~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~  368 (533)
                         +++|.++|+++|+++|+|++|.....    + .++.    ++   ..|   +++.|++|.+ |++|  +||+++   
T Consensus       183 ---~~~i~~~~~~~~~~vivD~a~~~g~~----~-~~~~----~~---~~D---~~~~s~~K~~-gp~G--~G~l~~---  238 (406)
T PRK09295        183 ---LAEMIALAHQHGAKVLVDGAQAVMHH----P-VDVQ----AL---DCD---FYVFSGHKLY-GPTG--IGILYV---  238 (406)
T ss_pred             ---HHHHHHHHHHcCCEEEEEcccccCcc----c-cCch----hc---CCC---EEEeehhhcc-CCCC--cEEEEE---
Confidence               88899999999999999999965221    1 1211    11   234   7789999966 7666  799887   


Q ss_pred             CHHHHHHHHHhhh-----------------------ccccCChHHHHHHHHHcCCCCCCChhHHHHHH-HHHHHHHHHHH
Q 009517          369 SAEVREQIYKVAS-----------------------VNLCSNISGQILASLVMSPPKVGDESYESYCA-ERDGILSSLAR  424 (533)
Q Consensus       369 ~~~~~~~l~~~~~-----------------------~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~-~~~~~~~~~~~  424 (533)
                      ++++++.+.....                       ...+++..+..++..+++          .+.+ ..+.+.++.++
T Consensus       239 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~----------~~~~~g~~~i~~~~~~  308 (406)
T PRK09295        239 KEALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALD----------YVSALGLNNIAEYEQN  308 (406)
T ss_pred             chHhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHH----------HHHHhCHHHHHHHHHH
Confidence            7777665532100                       112455666666666653          1112 24567777888


Q ss_pred             HHHHHHHHHhcCCCceEecCC--ceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCC-----C
Q 009517          425 RAKTLEDAFNSLEGITCNKAE--GAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQV-----P  497 (533)
Q Consensus       425 ~~~~l~~~L~~~~g~~~~~~~--gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~-----~  497 (533)
                      .++++.+.|++++|++++.+.  .+++.|. ++  .          . ....+ ...|.++||.+..|..+...     .
T Consensus       309 l~~~l~~~l~~~~~~~~~~~~~~~~iv~~~-~~--~----------~-~~~~~-~~~L~~~gI~v~~g~~c~~~~~~~~~  373 (406)
T PRK09295        309 LMHYALSQLESVPDLTLYGPQNRLGVIAFN-LG--K----------H-HAYDV-GSFLDNYGIAVRTGHHCAMPLMAYYN  373 (406)
T ss_pred             HHHHHHHHHhcCCCEEEeCCCCCceEEEEE-EC--C----------c-CHHHH-HHHHHhCCeEEeccccchHHHHHHHC
Confidence            889999999998888887653  5555542 22  1          1 12233 35678899999998755311     0


Q ss_pred             CCceEEEEec--CCcCcHHHHHHHHHHHHH
Q 009517          498 GTWHFRCTIL--PQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       498 g~~~iRis~~--~~~e~i~~~~~~l~~~l~  525 (533)
                      ..+++|+|+.  .+++||+.+++.|+++.+
T Consensus       374 ~~~~iRiS~~~ynt~~did~l~~~l~~i~~  403 (406)
T PRK09295        374 VPAMCRASLAMYNTHEEVDRLVAGLQRIHR  403 (406)
T ss_pred             CCCEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence            1238999997  888999999999988643

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=99.95  E-value=3.5e-26  Score=235.59  Aligned_cols=349  Identities=13%  Similarity=0.114  Sum_probs=234.8

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      ++.++++...++.|+++      +||+..|....                    .+...      ++++++++.+++.+.
T Consensus        20 ~~~~~~G~~l~d~dG~~------ylD~~~g~~~~--------------------~lGh~------~p~v~~a~~~~~~~~   67 (397)
T TIGR03246        20 IPVRGEGSRVWDQQGKE------YIDFAGGIAVN--------------------ALGHA------HPELVKALIEQADKL   67 (397)
T ss_pred             eEEEeecCEEEeCCCCE------EEECCcCHhhc--------------------cCCCC------CHHHHHHHHHHHHhc
Confidence            55667777766667777      88886664221                    01221      689999999998863


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC------CC-CeEEEcCCcCcch
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS------EN-DGILCPIPQYPLY  228 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~------~g-d~Vlv~~p~~~~~  228 (533)
                      ... ...|.     .+....+++.+.+..+    .+.++++++|++|++.+++.++..      +| ++|+..+-+|++.
T Consensus        68 ~~~-~~~~~-----~~~~~~la~~L~~~~~----~~~~~f~~SGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~  137 (397)
T TIGR03246        68 WHI-GNGYT-----NEPVLRLAKKLVDATF----ADKVFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGR  137 (397)
T ss_pred             ccc-cCccC-----CHHHHHHHHHHHhhCC----CCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCc
Confidence            210 11222     2333344444443322    468999999999999999987311      23 6788888889887


Q ss_pred             HHHHHH-hCCe------------EEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCC-CHHHHHH
Q 009517          229 SASIAL-HGGT------------LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVL-AEENQRA  294 (533)
Q Consensus       229 ~~~~~~-~g~~------------~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~-s~~~l~~  294 (533)
                      ...... .+..            +..++       ..|++.+++.+.+      ++++|+++.+++++|+.. +.+.+++
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~d~~~l~~~l~~------~~aavi~Epi~~~~G~~~~~~~~l~~  204 (397)
T TIGR03246       138 TLFTVSVGGQPKYSQGFAPLPGGIKHAP-------YNDLAAAKALISD------KTCAVIVEPIQGEGGVVPADPAFLKG  204 (397)
T ss_pred             cHHHHHhcCCcccccCCCCCCCceEEeC-------CCCHHHHHHHhcc------CeEEEEEecccCCCCCcCCCHHHHHH
Confidence            543333 2321            11121       1278999998865      788999887777778654 8899999


Q ss_pred             HHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHH
Q 009517          295 IVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVRE  374 (533)
Q Consensus       295 i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~  374 (533)
                      |.++|++||+++|+||+|+++.+.|.  ......  ..+   .+|     +.+|||.+ | .|+|+||+++   ++++++
T Consensus       205 l~~lc~~~g~llI~DEv~tG~Gr~G~--~~a~~~--~gv---~pD-----i~t~~K~l-g-gG~pigav~~---~~~i~~  267 (397)
T TIGR03246       205 LRELCDRHNALLIFDEVQTGVGRTGE--LYAYMH--YGV---TPD-----ILTSAKAL-G-GGFPIGAMLT---TTEIAA  267 (397)
T ss_pred             HHHHHHHcCCEEEEechhhcCCcccc--chhhhh--cCC---CCC-----EEEeehhh-h-CCcceeEEEE---cHHHHH
Confidence            99999999999999999999866553  222111  122   466     45899999 5 6999999998   899988


Q ss_pred             HHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCceEecCCceeE
Q 009517          375 QIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL----EGITCNKAEGAMY  449 (533)
Q Consensus       375 ~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~gg~~  449 (533)
                      .+..... .+++.++++++++.+.|+.           .+ .+++.++++++.+++.+.|+++    +-+..+++.|.++
T Consensus       268 ~~~~~~~~~t~~~~p~~~aaa~a~l~~-----------~~-~~~l~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~G~~~  335 (397)
T TIGR03246       268 HLKVGTHGTTYGGNPLACAVAGKVLDL-----------VN-TPELLAGVKQRHDLFVDGLEKINARYNVFSEIRGKGLLI  335 (397)
T ss_pred             hccCCCcCCCCCCCHHHHHHHHHHHHH-----------Hh-hccHHHHHHHHHHHHHHHHHHHHhcCCCeEeeecCceEE
Confidence            8865433 5678899999998888741           11 2456778888888999988876    1244566677665


Q ss_pred             EecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEe--cCCcCcHHHHHHHHHHHHHHH
Q 009517          450 LFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTI--LPQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~--~~~~e~i~~~~~~l~~~l~~~  527 (533)
                      .+. +..+..          .....++. .|.++||++.+.       +.+++|+++  .+++++|++++++|+++++++
T Consensus       336 ~i~-~~~~~~----------~~~~~~~~-~l~~~Gv~~~~~-------g~~~lR~~p~~~~t~~~i~~~~~~l~~~l~~~  396 (397)
T TIGR03246       336 GAV-LTEAYQ----------GKAKQFVN-AAAEEGVIALIA-------GPNVVRFAPSLVISDDDIDEGLARFERAIEQV  396 (397)
T ss_pred             EEE-EcCchh----------hHHHHHHH-HHHHCCeEEeec-------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            432 221100          01234444 455689998862       224899966  489999999999999988764

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>PLN00144 acetylornithine transaminase

Probab=99.95  E-value=2.1e-26  Score=235.36  Aligned_cols=325  Identities=12%  Similarity=0.058  Sum_probs=212.5

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCC------
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSE------  214 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~------  214 (533)
                      ++++++++.+++.+...     +... ...+....+|+.+.+..    ..++|+++++|++|++.+++..+...      
T Consensus        33 ~p~v~~ai~~q~~~~~~-----~~~~-~~~~~~~~la~~l~~~~----~~~~v~f~~sGseA~e~AlklAr~~~~~~~~~  102 (382)
T PLN00144         33 DPDWVKAVAEQAGTLAH-----VSNV-YHTIPQVELAKRLVASS----FADRVFFCNSGTEANEAAIKFARKYQRVRAPD  102 (382)
T ss_pred             CHHHHHHHHHHHHhcCC-----cccc-ccCHHHHHHHHHHHhcC----CCCeEEEeCCcHHHHHHHHHHHHHHHhccCCC
Confidence            68999999999986322     1111 11233445566555432    24699999999999999999875211      


Q ss_pred             --------CCeEEEcCCcCcchHHHHHHhCCeE-EE---EecCCCCCC--CCCHHHHHHHHHHHHhcCCCeeEEEEeCCC
Q 009517          215 --------NDGILCPIPQYPLYSASIALHGGTL-VP---YYLDEATGW--GLETSEVKKQLEAAKAKGITVRALVVINPG  280 (533)
Q Consensus       215 --------gd~Vlv~~p~~~~~~~~~~~~g~~~-~~---v~~~~~~~~--~ld~~~l~~~i~~~~~~g~~~~~iil~~p~  280 (533)
                              ..+|+....+|++....+....... ..   .|..+.-.+  --|++.+++.+...     ++++||++..+
T Consensus       103 ~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~-----~~aavi~eP~q  177 (382)
T PLN00144        103 KKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEYGNLEAARKLIQKG-----KTAAVFVEPVQ  177 (382)
T ss_pred             CccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCCCCHHHHHHhcCCC-----CeEEEEEcccc
Confidence                    2479999999999775554432211 00   110000000  12789998888532     68888888669


Q ss_pred             CCCccC-CCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCe
Q 009517          281 NPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKR  359 (533)
Q Consensus       281 NPtG~~-~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~r  359 (533)
                      ||+|+. ++.+.+++|.++|++||+++|+||+|++|.+.|. . .+. . ...+   .||     +.||||+++  +|+|
T Consensus       178 ~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~-~-~~~-~-~~~~---~PD-----i~t~sK~l~--~G~p  243 (382)
T PLN00144        178 GEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGY-L-WAH-E-AYGV---EPD-----IMTLAKPLA--GGLP  243 (382)
T ss_pred             CCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccch-H-hhh-h-hcCC---CCC-----EEEeccccc--CCcc
Confidence            996653 3566699999999999999999999999877653 1 111 1 1222   677     789999994  6999


Q ss_pred             eEEEEEecCCHHHHHHHHHhh-hccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 009517          360 GGYMEVTGFSAEVREQIYKVA-SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEG  438 (533)
Q Consensus       360 iG~v~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  438 (533)
                      +||+++   ++++++.+.... ..+++.++++++++.+.|+-..  +.   .+.++++.+.+.+   ++.+.+.+.+.|.
T Consensus       244 ig~v~~---~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~l~~i~--~~---~~~~~~~~~g~~l---~~~l~~~~~~~~~  312 (382)
T PLN00144        244 IGAVLV---TEKVASAINPGDHGSTFAGGPLVCNAALAVLDKIS--KP---GFLASVAKKGEYL---RELLRRKLGGNPH  312 (382)
T ss_pred             eEEEEE---cHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHh--hc---hHHHHHHHHHHHH---HHHHHHHHhhCCC
Confidence            999998   999998876433 3678899999999986653110  00   1222233333333   2233444444444


Q ss_pred             ceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHH
Q 009517          439 ITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAI  516 (533)
Q Consensus       439 ~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~  516 (533)
                      +..+.. .|+++|+.+..+              ...++ ..+.++||.+.|+..      .+.|||++.  .++++|+++
T Consensus       313 ~~~vrg-~G~~~~l~l~~~--------------~~~~~-~~~~~~Gv~i~~~~~------~~~lrl~p~~~~~~~~i~~~  370 (382)
T PLN00144        313 VKEVRG-VGLLVGIQLDVP--------------AGPLV-DACRDSGLLVLTAGK------GDVVRLVPPLVISEAELEQA  370 (382)
T ss_pred             ceeeec-CceEEEEEecCc--------------cHHHH-HHHHHCCeEEeecCC------CCEEEEeCCCccCHHHHHHH
Confidence            444555 678899766311              22333 445679999998621      248999995  788999999


Q ss_pred             HHHHHHHHHHH
Q 009517          517 VTRLTDFHKNF  527 (533)
Q Consensus       517 ~~~l~~~l~~~  527 (533)
                      +++|++++.++
T Consensus       371 ~~~l~~~l~~~  381 (382)
T PLN00144        371 VEILADCLPAL  381 (382)
T ss_pred             HHHHHHHHHhc
Confidence            99999998764

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=99.95  E-value=1.9e-26  Score=238.46  Aligned_cols=367  Identities=16%  Similarity=0.121  Sum_probs=242.7

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      ++.++++...++.||++      ++|+..|....                      ..+++    ++++++++.+++.+.
T Consensus        25 ~~~~~~G~~l~D~dG~~------ylD~~~g~~~~----------------------~lGh~----~p~v~~ai~~ql~~~   72 (421)
T PRK06777         25 YAERAENATLWDVEGRE------YIDFAAGIAVL----------------------NTGHR----HPKVVAAVRQQLDQF   72 (421)
T ss_pred             eEEeeecCEEEeCCCCE------EEEcccCHHhh----------------------ccCCC----CHHHHHHHHHHHhhc
Confidence            45556666666777777      78876554221                      11111    688999999999874


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCC-CeEEEcCCcCcchHHHHHH
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-DGILCPIPQYPLYSASIAL  234 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vlv~~p~~~~~~~~~~~  234 (533)
                      ..   ..+...  ..+....+|+.+...... ...++++++++|++|++.+++..+...| .+|+....+|++....+..
T Consensus        73 ~~---~~~~~~--~~~~~~~la~~l~~~~p~-~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s  146 (421)
T PRK06777         73 TH---TAYQIV--PYASYVTLAERINALAPI-DGPAKTAFFTTGAEAVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMA  146 (421)
T ss_pred             cc---cccccc--CChHHHHHHHHHHHhCCC-CCCceEEEeCCcHHHHHHHHHHHHHhhCCCeEEEEcCCcCCccHHHHh
Confidence            21   112110  122333455555433210 1246899999999999999998863344 5799999999998755543


Q ss_pred             h-CCe-------------EEEEecCCCCCCC----CCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCcc-CCCHHHHHHH
Q 009517          235 H-GGT-------------LVPYYLDEATGWG----LETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ-VLAEENQRAI  295 (533)
Q Consensus       235 ~-g~~-------------~~~v~~~~~~~~~----ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~-~~s~~~l~~i  295 (533)
                      . +..             +..++.... ..+    -+++.+++.++.. ..+.++.+|+++..++..|+ +++++.+++|
T Consensus       147 ~t~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~l~~~~~~~-~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l  224 (421)
T PRK06777        147 LTGKVAPYKVGFGPFPGSIFHALYPNE-LHGVSVEEALSSVERLFKAD-IAPDQVAAILLEPIQGEGGFNVAPPEFMSAL  224 (421)
T ss_pred             hcCCCcccccCCCCCCCCcEEcCCCcc-ccCcCHHHHHHHHHHHHHhc-cCCCceEEEEECCccCCCCCccCCHHHHHHH
Confidence            3 211             111111110 011    1356677777531 01236788888877888886 6889999999


Q ss_pred             HHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHH
Q 009517          296 VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQ  375 (533)
Q Consensus       296 ~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~  375 (533)
                      .++|++||+++|+||+|++|.++|.  +.++..+  ++   .+|     +.+|||.+ + +|+|+||+++   ++++++.
T Consensus       225 ~~lc~~~g~llI~DEv~tg~gr~g~--~~~~~~~--~~---~pD-----iv~~sK~l-~-~G~pigav~~---~~~i~~~  287 (421)
T PRK06777        225 RTLCDEHGILLIADEVQTGFARTGK--LFAMEYY--DV---KPD-----LITMAKSL-G-GGMPISAVVG---RAEVMDA  287 (421)
T ss_pred             HHHHHHcCCEEEEechhhCCccCCc--hhhhhhc--CC---CCC-----EEeeehhh-c-CCCceEEEEE---cHHHHhc
Confidence            9999999999999999999877653  2222221  22   466     44799999 5 7999999998   8999888


Q ss_pred             HHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCceEecCCceeEE
Q 009517          376 IYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL----EGITCNKAEGAMYL  450 (533)
Q Consensus       376 l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~gg~~~  450 (533)
                      +..... .++++++++++++.++|+           ..++ +.+.++++++.+++++.|+++    +.+..+++.|.|+.
T Consensus       288 ~~~~~~~~T~~~~p~~~aaa~a~L~-----------~~~~-~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~~~  355 (421)
T PRK06777        288 PAPGGLGGTYAGNPLAVAAALAVLD-----------VIAE-EKLCQRALILGAHLVEVLEKAKASCPAIVDIRARGSMVA  355 (421)
T ss_pred             cCCCCCCCCCCcCHHHHHHHHHHHH-----------HHHh-ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCceEEEE
Confidence            765433 678899999999999984           1222 456777888888888888774    55677899999987


Q ss_pred             ecccCCCHHHHHHHHhcCCCCh--HHHHHHHHHccceEEEcCCCCCCCCCCceEEEEe--cCCcCcHHHHHHHHHHHHH
Q 009517          451 FPRIQLPEKAIKAAEAEKTVPD--AFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTI--LPQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~--~~~~e~i~~~~~~l~~~l~  525 (533)
                      +- +..+..        +..+.  ...+...+.++||++.|+..|+.     ++||++  ..++++|++++++|++++.
T Consensus       356 i~-~~~~~~--------~~~~~~~~~~l~~~~~~~Gv~i~~~~~~g~-----~lr~~ppl~i~~~~i~~~~~~l~~~l~  420 (421)
T PRK06777        356 VE-FNDPQT--------GKPSPEFTRQYQRQALEEGLLLLSCGVHGN-----VIRFLYPLTIPDAQFSKALNILTRLLA  420 (421)
T ss_pred             EE-EecCcc--------CCccHHHHHHHHHHHHhCCeEEeecCCCCC-----EEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence            51 221110        00011  11122335569999999877652     899999  4899999999999998874

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=99.95  E-value=2.9e-25  Score=229.75  Aligned_cols=328  Identities=16%  Similarity=0.127  Sum_probs=221.7

Q ss_pred             CHHHHHHHHHHHhcCCCCC---ccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc-CCCC
Q 009517          141 SADSIERAWQILDQIPGRA---TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-SEND  216 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~---~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd  216 (533)
                      ++++++++.+++.+.....   ...|....-..+|++++|++++        .+..+++++|++|+..++..+.. .+++
T Consensus        61 ~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g--------~~~~l~~~sG~~an~~ai~~l~~~~~~~  132 (402)
T TIGR01821        61 HPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHG--------KESALVFTSGYVANDATLATLAKIIPGC  132 (402)
T ss_pred             CHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhC--------CCeEEEECchHHHHHHHHHHhhCCCCCC
Confidence            6889999999987643200   1112223335677788877763        23456666678999999988761 2566


Q ss_pred             eEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHH
Q 009517          217 GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIV  296 (533)
Q Consensus       217 ~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~  296 (533)
                      .|+.....|......+...|.++..++.       .|++++++.++...  ..++++|++++|+||||.+.+   +++|.
T Consensus       133 ~v~~~~~~h~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~--~~~~~~v~~e~~~~~~G~~~~---l~~i~  200 (402)
T TIGR01821       133 VIFSDELNHASMIEGIRHSGAEKFIFRH-------NDVAHLEKLLQSVD--PNRPKIIAFESVYSMDGDIAP---IEEIC  200 (402)
T ss_pred             EEEEcchHhHHHHHHHHHcCCeEEEECC-------CCHHHHHHHHHhcc--CCCCeEEEEcCCCCCCCCccC---HHHHH
Confidence            6666555665565667777877655542       37788888886421  125789999999999999998   89999


Q ss_pred             HHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHH
Q 009517          297 DFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQI  376 (533)
Q Consensus       297 ~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l  376 (533)
                      ++|++||+++|+||+|....++...  ..+... ..+   .++ ..|+++||||++ |++|   ||+++   ++++++.+
T Consensus       201 ~l~~~~~~~livDea~~~G~~g~~g--~g~~~~-~~~---~~~-~div~~t~sKa~-g~~G---G~i~~---~~~~~~~l  266 (402)
T TIGR01821       201 DLADKYGALTYLDEVHAVGLYGPRG--GGIAER-DGL---MHR-IDIIEGTLAKAF-GVVG---GYIAA---SRKLIDAI  266 (402)
T ss_pred             HHHHHcCCEEEEeCcccccccCCCC--Cccchh-ccC---CCC-CeEEEEechhhh-ccCC---ceeec---CHHHHHHH
Confidence            9999999999999999844442211  111110 111   111 247789999999 6667   88887   88999888


Q ss_pred             HHhhh---ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecc
Q 009517          377 YKVAS---VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPR  453 (533)
Q Consensus       377 ~~~~~---~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~  453 (533)
                      .....   .+.+.++..++++.++|+.           .+....+++++.++++++.+.|+++ |+.++.+.+++..+ .
T Consensus       267 ~~~~~~~~~t~~~~~~~~aaa~aaL~~-----------~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~i~~i-~  333 (402)
T TIGR01821       267 RSYAPGFIFTTSLPPAIAAGATASIRH-----------LKESQDLRRAHQENVKRLKNLLEAL-GIPVIPNPSHIVPV-I  333 (402)
T ss_pred             HHhCcCceecCcCCHHHHHHHHHHHHH-----------hhcCHHHHHHHHHHHHHHHHHHHHc-CCCcCCCCCCEEEE-E
Confidence            76543   2345677778877777742           1212344556678888999999988 88877777775433 2


Q ss_pred             cCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 009517          454 IQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~~  527 (533)
                      +..+.            ....+...+++++||.+.+......+.+..++||++.  +++++|++++++|+++++++
T Consensus       334 ~~~~~------------~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t~edi~~~~~~l~~~~~~~  397 (402)
T TIGR01821       334 IGDAA------------LCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHTDKMIDDLVEALLLVWDRL  397 (402)
T ss_pred             eCCHH------------HHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence            32111            1234555666678999998654443345568999995  89999999999999988754

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=99.95  E-value=9.5e-26  Score=233.44  Aligned_cols=344  Identities=16%  Similarity=0.138  Sum_probs=225.3

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      ++....+++.+..+     ....++++++|.|++                      +        ++.+++++..+. . 
T Consensus         4 ~~~~~~~~~~~~~~-----~~~~~~~l~~g~~~~----------------------~--------~p~~~~~~~~~~-~-   46 (398)
T cd00613           4 VLRHLKRLASKNKA-----LDQSMSFLGSGTYKH----------------------N--------PPAVIKRNILEN-E-   46 (398)
T ss_pred             HHHHHHHHHhcCcC-----cccCcccccccccCC----------------------c--------CcHHHHHHhccc-c-
Confidence            44555555443332     223479999999985                      3        355555544433 2 


Q ss_pred             CCCCccccCC-----CcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH-HHHHHHHHHhccCC--CCeEEEcCCcCcc
Q 009517          156 PGRATGAYSH-----SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS-PAVHMMMQLLIRSE--NDGILCPIPQYPL  227 (533)
Q Consensus       156 ~~~~~~~Y~~-----~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~-~al~~~~~~l~~~~--gd~Vlv~~p~~~~  227 (533)
                         ....|.+     ..|..++++++++++.+.+|.  +.++++++++++ ++...++.++. .+  ||+|++++|.|+.
T Consensus        47 ---~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~--~~~~v~~~~~g~~~~~~~~~~~~~-~~~~gd~Vl~~~~~h~~  120 (398)
T cd00613          47 ---FYTAYTPYQPEISQGRLQALFELQTMLCELTGM--DVANASLQDEATAAAEAAGLAAIR-AYHKRNKVLVPDSAHPT  120 (398)
T ss_pred             ---CcccCCCCChhhhhhHHHHHHHHHHHHHHHHCC--CccceeccCchHHHHHHHHHHHHh-cccCCCEEEEcCccCcc
Confidence               1345665     789999999999999998884  445777777555 44444444444 55  9999999999999


Q ss_pred             hHHHHHHhC----CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcC
Q 009517          228 YSASIALHG----GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEG  303 (533)
Q Consensus       228 ~~~~~~~~g----~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~  303 (533)
                      +...+...|    ++++.+++++  ++.+|++++++++.+      ++++|++++|+ |||.+.  +.+++|+++|++||
T Consensus       121 ~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~------~t~~viv~~~~-~~G~~~--~~l~~i~~la~~~g  189 (398)
T cd00613         121 NPAVARTRGEPLGIEVVEVPSDE--GGTVDLEALKEEVSE------EVAALMVQYPN-TLGVFE--DLIKEIADIAHSAG  189 (398)
T ss_pred             hHHHHHHhcccCCcEEEEeccCC--CCCcCHHHHHHhcCC------CeEEEEEECCC-CCceec--chHHHHHHHHHhcC
Confidence            999888888    8999888864  347899999999865      79999999985 899994  45799999999999


Q ss_pred             CEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCC----CCeeEEEEEecCCHHHHHHHHHh
Q 009517          304 LVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGEC----GKRGGYMEVTGFSAEVREQIYKV  379 (533)
Q Consensus       304 ~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~----G~riG~v~~~~~~~~~~~~l~~~  379 (533)
                      +++|+|+++.......     ..    ..+   ..|   +++.|++|++ + |    |+++||+..   ++++++.+...
T Consensus       190 ~~livD~~~~~~~~~~-----~~----~~~---~~d---~~~~s~~K~~-~-p~g~Ggp~~g~l~~---~~~~~~~~~~~  249 (398)
T cd00613         190 ALVYVDGDNLNLTGLK-----PP----GEY---GAD---IVVGNLQKTG-V-PHGGGGPGAGFFAV---KKELVRFLPGR  249 (398)
T ss_pred             CEEEEEeccccccCCC-----Ch----HHc---CCC---EEEeeccccC-C-CCCCCCCceeEEEE---hhhhHhhCCCC
Confidence            9999999875422111     00    011   234   8899999986 3 4    799999998   77777654110


Q ss_pred             ------------------------------hhccccCChHHH-HHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 009517          380 ------------------------------ASVNLCSNISGQ-ILASLVMSPPKVGDESYESYCAERDGILSSLARRAKT  428 (533)
Q Consensus       380 ------------------------------~~~~~~~~~~~q-~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (533)
                                                    ...++..++... .+...++...          .+.++++++++++++++
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~~----------~~g~~~~~~~~~~~~~~  319 (398)
T cd00613         250 LVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLG----------PEGLKEIAERAHLNANY  319 (398)
T ss_pred             eeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHhC----------HHHHHHHHHHHHHHHHH
Confidence                                          011122222333 3332222111          12356678889999999


Q ss_pred             HHHHHhcCCCceEecCCceeE--EecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEe
Q 009517          429 LEDAFNSLEGITCNKAEGAMY--LFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTI  506 (533)
Q Consensus       429 l~~~L~~~~g~~~~~~~gg~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~  506 (533)
                      +++.|++++++.  .+.+.++  ++++++.+.+.          +...++.. |.++||.+....    ..+.+.+|+++
T Consensus       320 l~~~L~~~~~~~--~~~~~~~~~v~~~~~~~~~~----------~~~~~~~~-L~~~gi~~~~~~----~~~~~~lRis~  382 (398)
T cd00613         320 LAKRLKEVGGVL--PFNGPFFHEFVLRLPPLYGI----------RAEDLAKA-LIDGGFHAPTMY----LPVDGTLMIEP  382 (398)
T ss_pred             HHHHHHhcCCcc--cCCCCeeEEEEEEcCCcchH----------HHHHHHHh-hhhcCccccccc----cCCCCeEEEEc
Confidence            999999884443  2333444  34333311010          13344444 456798764311    12334899999


Q ss_pred             c--CCcCcHHHHHHHH
Q 009517          507 L--PQEDKIPAIVTRL  520 (533)
Q Consensus       507 ~--~~~e~i~~~~~~l  520 (533)
                      .  +++++|+++++.|
T Consensus       383 ~~~~t~edid~~~~~L  398 (398)
T cd00613         383 TETETKEELDALLEAL  398 (398)
T ss_pred             CCCCCHHHHHHHHHhC
Confidence            5  8899999988764

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=99.95  E-value=1.2e-25  Score=234.71  Aligned_cols=374  Identities=13%  Similarity=0.099  Sum_probs=234.1

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      ++.++++...++.||++      +||+..|....                      ..+++    ++.+++++.+++.+.
T Consensus        39 ~~~~~~G~~l~D~dG~~------ylD~~~g~~~~----------------------~lGh~----~p~v~~ai~~q~~~~   86 (451)
T PRK06918         39 FAQSANGALVTDVDGNQ------YIDFAGAIGTI----------------------NVGHS----HPKVKEALHKQVDQY   86 (451)
T ss_pred             eEEeccccEEEeCCCCE------EEEcCCchhhc----------------------CCCCC----CHHHHHHHHHHHHhc
Confidence            56678888888888888      77776554321                      11111    688999999999863


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCC-CeEEEcCCcCcchHHHHHH
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-DGILCPIPQYPLYSASIAL  234 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vlv~~p~~~~~~~~~~~  234 (533)
                      ..     .....-..+.+..+|+.+....+.. ..+.|+++++|++|++.+++..+...| .+|+....+|++....+..
T Consensus        87 ~~-----~~~~~~~~~~~~~la~~L~~~~p~~-~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls  160 (451)
T PRK06918         87 IH-----TGFNVMMYEPYIELAEKLAALAPGS-FDKKVLFLNSGAEAVENAVKIARKYTKRQGIISFSRGFHGRTLMTMT  160 (451)
T ss_pred             cC-----ccccccccHHHHHHHHHHHHhCCCC-CCCEEEEcCCcHHHHHHHHHHHHHHhCCCcEEEECCCcCccchhhhh
Confidence            21     1111112344455566665432211 125899999999999999998863334 6799999999997755443


Q ss_pred             hCCe--------------EEEEecCCC--CCCCCC--------HHHHHHHHHHHHhcCCCeeEEEEeCCCCCCcc-CCCH
Q 009517          235 HGGT--------------LVPYYLDEA--TGWGLE--------TSEVKKQLEAAKAKGITVRALVVINPGNPTGQ-VLAE  289 (533)
Q Consensus       235 ~g~~--------------~~~v~~~~~--~~~~ld--------~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~-~~s~  289 (533)
                      ....              +..+|....  ...++.        .+.+++.+.... .+.++.+||++..+.-.|+ +++.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iAavi~EPi~g~gG~~~~~~  239 (451)
T PRK06918        161 MTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFISEV-APETIAAVVMEPVQGEGGFIVPSK  239 (451)
T ss_pred             hcCCCccccccCCCCCCCcEEcCCCccccccccCchHHHHHHHHHHHHHHHHhhc-CCCceEEEEECcccCCCCCccCCH
Confidence            3211              122222100  001111        123333332110 1225667766655555576 5566


Q ss_pred             HHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCC
Q 009517          290 ENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFS  369 (533)
Q Consensus       290 ~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~  369 (533)
                      +.+++|.++|++||+++|+||+|++|.+.|.  +.++..+  ++   .+|     +.||||.+ + +|+|+||+++   +
T Consensus       240 ~~l~~l~~l~~~~gillI~DEV~tg~gr~g~--~~a~~~~--~v---~pD-----i~t~sK~l-~-~G~pig~v~~---~  302 (451)
T PRK06918        240 KFVQEVRNICSEHGILFVADEIQTGFARTGK--YFAIEHF--DV---VPD-----LITVSKSL-G-AGVPISGVIG---R  302 (451)
T ss_pred             HHHHHHHHHHHHcCCEEEEeccccCcCccCc--eehhHhc--CC---CCC-----EEeeehhh-c-CCCccEEEEE---c
Confidence            6699999999999999999999999887663  3333222  11   366     56899999 5 7999999998   8


Q ss_pred             HHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCceEecC
Q 009517          370 AEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNS----LEGITCNKA  444 (533)
Q Consensus       370 ~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~g~~~~~~  444 (533)
                      +++++.+..... .++++++++|+++.++|+..           + .....++.+++++.+.+.|++    .+.+..+++
T Consensus       303 ~~i~~~~~~~~~~~T~~g~~l~~aaa~a~l~~i-----------~-~~~~~~~~~~~g~~l~~~l~~l~~~~~~~~~vrg  370 (451)
T PRK06918        303 KEIMDESAPGELGGTYAGSPLGCAAALAVLDII-----------E-KENLNDRAIELGKVVMNRFEEMKNKYNCIGDVRG  370 (451)
T ss_pred             HHHHhccCCCCcCcCCCcCHHHHHHHHHHHHHH-----------H-HCCHHHHHHHHHHHHHHHHHHHHhhCCCceeecc
Confidence            999888765443 77899999999988877411           0 012223333344444444433    344556788


Q ss_pred             CceeEEecccCCCHHHHHHHHhcCCCC--hHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHH
Q 009517          445 EGAMYLFPRIQLPEKAIKAAEAEKTVP--DAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRL  520 (533)
Q Consensus       445 ~gg~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l  520 (533)
                      .|+|+.|.....+..        ...+  ....+.+.+.++||++.|+..|+     +++||++.  +++++|++++++|
T Consensus       371 ~G~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~Gvlv~~~~~~~-----~~lrl~p~l~~t~~~id~~l~~l  437 (451)
T PRK06918        371 LGAMCAFELVQDRKT--------KEPDKTLTANICKEANKRGLLLLSAGTYG-----NVIRVLMPLVITDEQLEEGLTII  437 (451)
T ss_pred             ceeEEEEEEccCCCc--------CCCcHHHHHHHHHHHHHCCeEEeecCCCC-----CEEEEECCCccCHHHHHHHHHHH
Confidence            899988754321100        0001  11122344567899999986664     28999994  7899999999999


Q ss_pred             HHHHHHHHHH
Q 009517          521 TDFHKNFMDK  530 (533)
Q Consensus       521 ~~~l~~~~~~  530 (533)
                      +++++++.++
T Consensus       438 ~~~l~~~~~~  447 (451)
T PRK06918        438 EESLQACYEK  447 (451)
T ss_pred             HHHHHHHHHh
Confidence            9999987654

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=99.95  E-value=2.2e-25  Score=232.29  Aligned_cols=324  Identities=16%  Similarity=0.189  Sum_probs=224.3

Q ss_pred             CHHHHHHHHHHHhcCCCCC--ccccCC---CcccHHHHHHHHHHHHhhcCCCC-CCCCEEEcCChHHHHHHHHHHh----
Q 009517          141 SADSIERAWQILDQIPGRA--TGAYSH---SQGIKGLRDTIAAGIEARDGFPA-DPNDIFLTDGASPAVHMMMQLL----  210 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~--~~~Y~~---~~G~~~lr~aia~~~~~~~g~~~-~~~~i~~t~G~~~al~~~~~~l----  210 (533)
                      |..+++++.+.+.+.....  ...|..   ...+.++|++++++++      . ++++|++|+|+++++..+++.+    
T Consensus        45 p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~------~~~~~~v~~t~g~t~al~~i~~~~~~~~  118 (424)
T PLN02855         45 PAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFIN------ASTSREIVFTRNATEAINLVAYTWGLAN  118 (424)
T ss_pred             CHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcC------CCCCCEEEEeCCHHHHHHHHHHHhhhhc
Confidence            7888888888776432210  111211   1224688889998875      3 3579999999999999998863    


Q ss_pred             ccCCCCeEEEcCCcCcc----hHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccC
Q 009517          211 IRSENDGILCPIPQYPL----YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV  286 (533)
Q Consensus       211 ~~~~gd~Vlv~~p~~~~----~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~  286 (533)
                      + ++||+|+++.+.|+.    +...++..|++++.++++.+  ..+|++++++.+++      ++++|++++++||||.+
T Consensus       119 ~-~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~~~--~~~~~~~l~~~i~~------~t~lv~i~~~~n~tG~~  189 (424)
T PLN02855        119 L-KPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLTPD--EVLDVEQLKELLSE------KTKLVATHHVSNVLGSI  189 (424)
T ss_pred             C-CCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecCCC--CCcCHHHHHHHhcc------CceEEEEeCcccccccc
Confidence            4 689999999997774    44556677999999998754  36899999999976      79999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEe
Q 009517          287 LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVT  366 (533)
Q Consensus       287 ~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~  366 (533)
                      ++   +++|+++|+++|+++|+|++|..    +..+ .++    .++   ..|   +++.|++|.+ |++|  +||+++ 
T Consensus       190 ~~---~~~I~~l~~~~g~~vivD~a~~~----g~~~-~~~----~~~---~~d---~~~~s~~K~~-gp~G--~G~l~~-  247 (424)
T PLN02855        190 LP---VEDIVHWAHAVGAKVLVDACQSV----PHMP-VDV----QTL---GAD---FLVASSHKMC-GPTG--IGFLWG-  247 (424)
T ss_pred             CC---HHHHHHHHHHcCCEEEEEhhhhc----CCcC-CCc----hhc---CCC---EEEeeccccc-CCCc--cEEEEE-
Confidence            99   78899999999999999999953    2211 121    111   234   6799999965 7666  799988 


Q ss_pred             cCCHHHHHHHHHhhh----------------------ccccCChHHHHHHHHHcCCCCCCChhHHHHHH-HHHHHHHHHH
Q 009517          367 GFSAEVREQIYKVAS----------------------VNLCSNISGQILASLVMSPPKVGDESYESYCA-ERDGILSSLA  423 (533)
Q Consensus       367 ~~~~~~~~~l~~~~~----------------------~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~-~~~~~~~~~~  423 (533)
                        ++++++.+.....                      ...+++..+.+++..+++          .+.+ ..+.++++..
T Consensus       248 --~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~----------~~~~~g~~~i~~~~~  315 (424)
T PLN02855        248 --KSDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAID----------YLSEIGMDRIHEYEV  315 (424)
T ss_pred             --chhhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHH----------HHHHhCHHHHHHHHH
Confidence              7777766543210                      011234444444444442          1111 3566777888


Q ss_pred             HHHHHHHHHHhcCCCceEecCC-------ceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHcc-ceEEEcCCCCCC
Q 009517          424 RRAKTLEDAFNSLEGITCNKAE-------GAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNAT-GIVLVPGSGFGQ  495 (533)
Q Consensus       424 ~~~~~l~~~L~~~~g~~~~~~~-------gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-gV~v~pg~~f~~  495 (533)
                      +.++++++.|++++|++++.+.       +++..+ .++  .          . ....+. ..|.++ ||.+..|..+..
T Consensus       316 ~l~~~l~~~L~~~~g~~i~~~~~~~~~~r~~~v~~-~~~--~----------~-~~~~v~-~~L~~~~gI~v~~g~~c~~  380 (424)
T PLN02855        316 ELGTYLYEKLSSVPGVRIYGPKPSEGVGRAALCAF-NVE--G----------I-HPTDLS-TFLDQQHGVAIRSGHHCAQ  380 (424)
T ss_pred             HHHHHHHHHHhcCCCEEEeCCCcccccCcccEEEE-EEC--C----------c-CHHHHH-HHhcccCCEEEechhhhhH
Confidence            8899999999988898887542       344433 232  1          1 123333 445445 999998875421


Q ss_pred             C-----CCCceEEEEec--CCcCcHHHHHHHHHHHHHHHH
Q 009517          496 V-----PGTWHFRCTIL--PQEDKIPAIVTRLTDFHKNFM  528 (533)
Q Consensus       496 ~-----~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~~~  528 (533)
                      .     .-.+++|||+.  .+++||+++++.|+++++.++
T Consensus       381 ~~~~~~g~~~~iRiS~~~ynt~~di~~l~~~l~~~~~~~~  420 (424)
T PLN02855        381 PLHRYLGVNASARASLYFYNTKEEVDAFIHALKDTIAFFS  420 (424)
T ss_pred             HHHHHhCCCCeEEEEeccCCCHHHHHHHHHHHHHHHHHHH
Confidence            0     11238999996  889999999999999988754

>PRK09064 5-aminolevulinate synthase; Validated

Probab=99.95  E-value=5.3e-25  Score=228.28  Aligned_cols=328  Identities=16%  Similarity=0.120  Sum_probs=219.6

Q ss_pred             CHHHHHHHHHHHhcCCCC---CccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc-CCCC
Q 009517          141 SADSIERAWQILDQIPGR---ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-SEND  216 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~---~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd  216 (533)
                      ++++++++.+++.+....   ....|.+..-..+|++++|++++      . ++.+++++ |.++...++..+.. .+++
T Consensus        62 ~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~g------~-~~~~~~~s-G~~an~~ai~~l~~~~~~~  133 (407)
T PRK09064         62 HPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHG------K-EAALVFTS-GYVSNDATLSTLAKLIPDC  133 (407)
T ss_pred             CHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHhC------C-CcEEEECc-HHHHHHHHHHHHhCCCCCC
Confidence            688999998888764210   01223334446778888888763      1 33445444 55787777777651 2566


Q ss_pred             eEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHH
Q 009517          217 GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIV  296 (533)
Q Consensus       217 ~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~  296 (533)
                      .|+.....|......+...|.++..++.       .|++++++.++..  ..+++++|++++++||+|.+.+   +++|.
T Consensus       134 ~i~~~~~~h~s~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~~--~~~~~~~v~~~~v~s~~G~~~~---l~~i~  201 (407)
T PRK09064        134 VIFSDELNHASMIEGIRRSRCEKHIFRH-------NDVAHLEELLAAA--DPDRPKLIAFESVYSMDGDIAP---IAEIC  201 (407)
T ss_pred             EEEEeCcchHHHHHHHHHcCCcEEEECC-------CCHHHHHHHHHhc--cCCCCeEEEEeCCCCCCccccC---HHHHH
Confidence            5655555565565666777777655542       3788888888642  1126789999999999999988   99999


Q ss_pred             HHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHH
Q 009517          297 DFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQI  376 (533)
Q Consensus       297 ~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l  376 (533)
                      ++|+++|+++|+||+|....|+...  ..+... .++   . +...|+++||||+| |++|   ||+++   ++++++.+
T Consensus       202 ~l~~~~~~~livDEa~~~G~~g~~g--~g~~~~-~~~---~-~~~div~~t~sKa~-g~~G---G~~~~---~~~~~~~l  267 (407)
T PRK09064        202 DLADKYNALTYLDEVHAVGMYGPRG--GGIAER-DGL---M-DRIDIIEGTLAKAF-GVMG---GYIAG---SAALVDAV  267 (407)
T ss_pred             HHHHHcCCEEEEECCCcccccCCCC--CChHHh-cCC---C-CCCeEEEEecchhh-hccC---ceEec---CHHHHHHH
Confidence            9999999999999999843343211  111111 111   1 11357889999999 6666   99887   88998888


Q ss_pred             HHhhh---ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecc
Q 009517          377 YKVAS---VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPR  453 (533)
Q Consensus       377 ~~~~~---~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~  453 (533)
                      .....   .+.+.++..+.++.+.|+           +.+.....+++++++++++.+.|+++ |++++.+.+++. ++.
T Consensus       268 ~~~~~~~~~t~~~~~~~~~aa~~al~-----------~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~iv-~i~  334 (407)
T PRK09064        268 RSYAPGFIFTTSLPPAIAAAALASIR-----------HLKESNEERERHQERAAKLKAALDAA-GIPVMPNESHIV-PVM  334 (407)
T ss_pred             HHhCccccccCcCCHHHHHHHHHHHH-----------HHhcCHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCCCEE-EEE
Confidence            76543   133556667777666663           22222344677888999999999987 888777666543 433


Q ss_pred             cCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 009517          454 IQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~~  527 (533)
                      +..+.            ....+..++++++||.+.+...+..+.+..++||++.  ++++++++++++|+++++++
T Consensus       335 ~~~~~------------~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t~edi~~l~~~l~~~~~~~  398 (407)
T PRK09064        335 VGDPE------------KCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHTDEMIDHLVEALVEVWARL  398 (407)
T ss_pred             eCCHH------------HHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence            32111            1234455666677999998654443345568999995  78999999999999988765

>PLN02624 ornithine-delta-aminotransferase

Probab=99.95  E-value=6.4e-26  Score=237.47  Aligned_cols=363  Identities=12%  Similarity=0.098  Sum_probs=234.4

Q ss_pred             chHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhc
Q 009517           75 EIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQ  154 (533)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~  154 (533)
                      .++.++++...++.|+++      ++||..|.-..                      ..+++    ++++++++.+++.+
T Consensus        59 ~~~~~a~G~~l~d~dG~~------ylD~~sg~~~~----------------------~~Gh~----~p~v~~ai~~ql~~  106 (474)
T PLN02624         59 VVFSRAKGSRIWDPEGKK------YLDFLSAYSAV----------------------NQGHC----HPKIIKALTEQAEK  106 (474)
T ss_pred             ceEEeeeeCEEEECCCCE------EEEcccchhcc----------------------cCCCC----CHHHHHHHHHHHHh
Confidence            356777777777777777      77775553221                      11111    68999999999987


Q ss_pred             CCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC-------C-C-CeEEEcCCcC
Q 009517          155 IPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS-------E-N-DGILCPIPQY  225 (533)
Q Consensus       155 ~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~-------~-g-d~Vlv~~p~~  225 (533)
                      ...  ...+.......+|.+.++++.    +    .+.++++++|++|++.+++.....       + + .+|+....+|
T Consensus       107 ~~~--~~~~~~~~~~~~la~~L~~~~----~----~~~~~f~~SGseA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~y  176 (474)
T PLN02624        107 LTL--SSRAFYNDKFPEFAEYLTSMF----G----YDMVLPMNTGAEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCF  176 (474)
T ss_pred             cCC--cccccCCHHHHHHHHHHHhhc----C----CCeEEEeCChHHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCc
Confidence            432  111112223455666665553    2    468999999999999999977520       1 2 3578888889


Q ss_pred             cchHHHHHHhCCeEE-EE---ecCCC---CCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHH-HHHHHHH
Q 009517          226 PLYSASIALHGGTLV-PY---YLDEA---TGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE-NQRAIVD  297 (533)
Q Consensus       226 ~~~~~~~~~~g~~~~-~v---~~~~~---~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~-~l~~i~~  297 (533)
                      ++............. .-   |..+.   -.| -|++.+++.++..   +.++++|+++.++|++|.+++++ .+++|.+
T Consensus       177 HG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~d~~~l~~~l~~~---~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~  252 (474)
T PLN02624        177 HGRTLAAISMSCDNEATRGFGPLLPGHLKVDF-GDLDALEKIFEED---GDRIAAFLFEPIQGEAGVVIPPDGYLKAVRE  252 (474)
T ss_pred             CCCCHHHhhcCCCccccccCCCCCCCceEeCC-CCHHHHHHHHHhC---CCCEEEEEECCccCCCCCcCCCHHHHHHHHH
Confidence            887544433321110 00   00000   001 1789999988642   34788999999999999987766 5999999


Q ss_pred             HHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHH
Q 009517          298 FCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY  377 (533)
Q Consensus       298 l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~  377 (533)
                      +|++||+++|+||+|.++.++|.  ...     .++.+..+|     +.+|||.+ |.+++++|++++   +++++..+.
T Consensus       253 lc~~~gillI~DEv~tG~GrtG~--~~a-----~~~~~i~pD-----iv~lsK~l-ggG~~pigav~~---~~~i~~~~~  316 (474)
T PLN02624        253 LCSKHNVLMIADEIQTGLARTGK--MLA-----CDWEEVRPD-----VVILGKAL-GGGVIPVSAVLA---DKDVMLCIK  316 (474)
T ss_pred             HHHHcCCEEEEeccccCcCcCcc--hhh-----HHhcCCCCC-----EEEecccc-cCCCCcceeeee---cHHHHhHhc
Confidence            99999999999999998766553  111     122222455     44579999 655699999998   888888776


Q ss_pred             Hhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----C-CceEecCCceeEEe
Q 009517          378 KVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL----E-GITCNKAEGAMYLF  451 (533)
Q Consensus       378 ~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~-g~~~~~~~gg~~~~  451 (533)
                      +... .+++++++.++++.+.|+..           ++ ..+.++..++.+.+++.|+++    + .+..+++.|.|+.+
T Consensus       317 ~~~~~~T~~g~pl~~aaa~aaLe~l-----------~~-~~l~~~~~~~~~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i  384 (474)
T PLN02624        317 PGEHGSTFGGNPLASAVAMAALQVV-----------QD-EKLAERSAKLGQELRDQLQKIQKQFPKLIKEVRGRGLLNAV  384 (474)
T ss_pred             cCCcCCCCCCCHHHHHHHHHHHHHH-----------Hh-chHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEeeEEEEEE
Confidence            5443 66788999999998887421           11 123334444445555555443    3 25556778877663


Q ss_pred             cccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEe--cCCcCcHHHHHHHHHHHHHHHH
Q 009517          452 PRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTI--LPQEDKIPAIVTRLTDFHKNFM  528 (533)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~--~~~~e~i~~~~~~l~~~l~~~~  528 (533)
                       .+..+..        +......++.. |.++||++.|+.       .+++||++  .+++++|++++++|++++++..
T Consensus       385 -~l~~~~~--------~~~~a~~~~~~-L~e~GV~v~p~~-------~~~lR~~p~l~~t~e~id~~l~~L~~~l~~~~  446 (474)
T PLN02624        385 -VLNSPKL--------GPVSAYDVCLK-LKERGLLAKPTH-------DTIIRLAPPLSISEDELQECSKALSDVLEHDL  446 (474)
T ss_pred             -EecCCCc--------ChHHHHHHHHH-HHhCCeEEecCC-------CCEEEEECCccCCHHHHHHHHHHHHHHHHHHH
Confidence             2332110        00012344444 567999999742       23899997  4899999999999999988754

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=99.95  E-value=2.4e-25  Score=226.96  Aligned_cols=319  Identities=15%  Similarity=0.142  Sum_probs=215.2

Q ss_pred             CCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCC-CCEEEcCChHHHHHHHHHHhccCCCCeE
Q 009517          140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGI  218 (533)
Q Consensus       140 ~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~~~gd~V  218 (533)
                      .|+.+++++.+.+.      ...|..   ..++.+.+.+.+.+.+|  .++ +.+++++|+++++..++..++ .+||+|
T Consensus        10 ~~~~v~~a~~~~~~------~~~~~~---~~~~~~~~~~~la~~~g--~~~~~~~~~~~~~t~al~~~~~~~~-~~g~~v   77 (356)
T cd06451          10 VPPRVLKAMNRPML------GHRSPE---FLALMDEILEGLRYVFQ--TENGLTFLLSGSGTGAMEAALSNLL-EPGDKV   77 (356)
T ss_pred             CCHHHHHHhCCCcc------CCCCHH---HHHHHHHHHHHHHHHhc--CCCCCEEEEecCcHHHHHHHHHHhC-CCCCEE
Confidence            36777777753321      122221   33334444444444445  333 457788888999999999998 799999


Q ss_pred             EEcCCcCcc--hHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHH
Q 009517          219 LCPIPQYPL--YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIV  296 (533)
Q Consensus       219 lv~~p~~~~--~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~  296 (533)
                      +++.++|+.  +...++..|++++.++.++  ++.+|++++++.+++.     ++++|++++|+||||.+++   +++|.
T Consensus        78 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~i~~~-----~~~~v~i~~~~~~~G~~~~---~~~i~  147 (356)
T cd06451          78 LVGVNGVFGDRWADMAERYGADVDVVEKPW--GEAVSPEEIAEALEQH-----DIKAVTLTHNETSTGVLNP---LEGIG  147 (356)
T ss_pred             EEecCCchhHHHHHHHHHhCCCeEEeecCC--CCCCCHHHHHHHHhcc-----CCCEEEEeccCCCcccccC---HHHHH
Confidence            999988765  4667788899999999875  3589999999999753     6899999999999999998   78889


Q ss_pred             HHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHH
Q 009517          297 DFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQI  376 (533)
Q Consensus       297 ~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l  376 (533)
                      ++|+++|+++++|++|..    |..+ .++.    .+   ..+   +++.|++|++++  +.++||++.   ++++++.+
T Consensus       148 ~~a~~~~~~li~D~~~~~----g~~~-~~~~----~~---~~d---~~~~s~~K~l~~--p~g~G~l~~---~~~~~~~~  207 (356)
T cd06451         148 ALAKKHDALLIVDAVSSL----GGEP-FRMD----EW---GVD---VAYTGSQKALGA--PPGLGPIAF---SERALERI  207 (356)
T ss_pred             HHHHhcCCEEEEeeehhc----cCcc-cccc----cc---Ccc---EEEecCchhccC--CCCcceeEE---CHHHHHHH
Confidence            999999999999998762    2111 1111    11   123   557789999843  346899998   88888777


Q ss_pred             HH---hh-----------------hccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 009517          377 YK---VA-----------------SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL  436 (533)
Q Consensus       377 ~~---~~-----------------~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  436 (533)
                      ..   ..                 ....+++...+.++.++++.       +  ....++.+.++++++++++.+.|.++
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~-------l--~~~~~~~~~~~~~~~~~~l~~~L~~~  278 (356)
T cd06451         208 KKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDL-------I--LEEGLENRWARHRRLAKALREGLEAL  278 (356)
T ss_pred             HhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHH-------H--HHhhHHHHHHHHHHHHHHHHHHHHHc
Confidence            53   00                 01122344444555555421       0  01234567778888899999999988


Q ss_pred             CCceEecCC---ceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcC
Q 009517          437 EGITCNKAE---GAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQED  511 (533)
Q Consensus       437 ~g~~~~~~~---gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e  511 (533)
                       |+.+..+.   ++.++|+.++  .+         . +...++..+.+++||.+.||..+.   ..++||+|+.  .+++
T Consensus       279 -g~~~~~~~~~~~~~~~~~~~~--~~---------~-~~~~~~~~L~~~~gI~~~~g~~~~---~~~~iRis~~~~~~~e  342 (356)
T cd06451         279 -GLKLLAKPELRSPTVTAVLVP--EG---------V-DGDEVVRRLMKRYNIEIAGGLGPT---AGKVFRIGHMGEATRE  342 (356)
T ss_pred             -CCeeccCcccCCCceEEEECC--CC---------C-CHHHHHHHHHHhCCEEEecccccc---cCCEEEEecCCCCCHH
Confidence             87775432   3444554333  11         1 234455454443499999987543   2239999996  7889


Q ss_pred             cHHHHHHHHHHHHH
Q 009517          512 KIPAIVTRLTDFHK  525 (533)
Q Consensus       512 ~i~~~~~~l~~~l~  525 (533)
                      ++++++++|+++++
T Consensus       343 ~v~~~~~~l~~~~~  356 (356)
T cd06451         343 DVLGVLSALEEALK  356 (356)
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999988763

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=99.95  E-value=1.2e-25  Score=232.62  Aligned_cols=326  Identities=11%  Similarity=0.090  Sum_probs=210.2

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc--------
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR--------  212 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--------  212 (533)
                      ++++++++.+++.....  .  ... . ..+..+.+++.+.+..+    .+.++++++|++|++.+++.++.        
T Consensus        49 ~p~v~~a~~~~~~~~~~--~--~~~-~-~~~~~~~~~~~l~~~~~----~~~~~~~~SGs~A~e~al~~~~~~~~~~~~~  118 (400)
T PTZ00125         49 HPKILAALINQAQKLTL--T--SRA-F-YNDVLGLAEKYITDLFG----YDKVLPMNSGAEAGETALKFARKWGYEVKGI  118 (400)
T ss_pred             CHHHHHHHHHHHHhccc--c--ccc-c-cCHHHHHHHHHHHhCCC----CCEEEEeCCcHHHHHHHHHHHHHHHHhccCC
Confidence            68899999988875322  1  111 0 12233444444443333    36899999999999999998741        


Q ss_pred             -CCCCeEEEcCCcCcchHHHHHHh-CCeEEEEecCC-CCCC----CCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCcc
Q 009517          213 -SENDGILCPIPQYPLYSASIALH-GGTLVPYYLDE-ATGW----GLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ  285 (533)
Q Consensus       213 -~~gd~Vlv~~p~~~~~~~~~~~~-g~~~~~v~~~~-~~~~----~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~  285 (533)
                       ..+++|+..+-.|++........ +.........+ ..++    ..|++++++.++.     .++++|++++++||||.
T Consensus       119 ~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~-----~~~~~v~~ep~~~~~G~  193 (400)
T PTZ00125        119 PENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDYNDVEALEKLLQD-----PNVAAFIVEPIQGEAGV  193 (400)
T ss_pred             CCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCCCCHHHHHHHhCC-----CCeEEEEEcCccCCCCC
Confidence             12478999999998865443332 22111000000 0000    1389999999862     17999999999999999


Q ss_pred             CCC-HHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEE
Q 009517          286 VLA-EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYME  364 (533)
Q Consensus       286 ~~s-~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~  364 (533)
                      +++ .+.+++|.++|++||+++|+||+|.++.++|.  ...     .+..+..+|     +.+|||++ +.+++|+||++
T Consensus       194 ~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~--~~~-----~~~~~~~pd-----~~~~sK~l-~~g~~~ig~v~  260 (400)
T PTZ00125        194 IVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGK--LLA-----HDHEGVKPD-----IVLLGKAL-SGGLYPISAVL  260 (400)
T ss_pred             ccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccch--hhH-----HHhcCCCCC-----EEEEcccc-cCCCcCcEEEE
Confidence            886 56699999999999999999999998766553  111     111111455     33578999 43346999999


Q ss_pred             EecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCc
Q 009517          365 VTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL----EGI  439 (533)
Q Consensus       365 ~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~  439 (533)
                      +   ++++++.+..... .+++.+++.+.++.++|+.           .+. ....++.+++.+.+++.|+++    +.+
T Consensus       261 ~---~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~-----------i~~-~~~~~~~~~~~~~l~~~l~~l~~~~~~~  325 (400)
T PTZ00125        261 A---NDDVMLVIKPGEHGSTYGGNPLACAVAVEALEV-----------LKE-EKLAENAQRLGEVFRDGLKELLKKSPWV  325 (400)
T ss_pred             E---cHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHH-----------HHh-cCHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence            8   9999888765433 5678889999888777631           110 123344445555566666543    334


Q ss_pred             eEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHH
Q 009517          440 TCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIV  517 (533)
Q Consensus       440 ~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~  517 (533)
                      ..+.+.|. +.|+.++.+..          .....++.++ .++||.+.|+.       .++|||++.  .++++|++++
T Consensus       326 ~~~~~~g~-~~~v~~~~~~~----------~~~~~~~~~l-~~~Gv~v~~~~-------~~~lRi~~~~~~~~~~i~~~l  386 (400)
T PTZ00125        326 KEIRGKGL-LNAIVFDHSDG----------VNAWDLCLKL-KENGLLAKPTH-------DNIIRFAPPLVITKEQLDQAL  386 (400)
T ss_pred             EEEecccE-EEEEEEccCcc----------hHHHHHHHHH-HHCCeEEeecC-------CCEEEEECCccCCHHHHHHHH
Confidence            44566554 45544442211          0133445555 46899999842       238999974  8999999999


Q ss_pred             HHHHHHHHHHH
Q 009517          518 TRLTDFHKNFM  528 (533)
Q Consensus       518 ~~l~~~l~~~~  528 (533)
                      ++|.++++++.
T Consensus       387 ~~l~~~l~~~~  397 (400)
T PTZ00125        387 EIIKKVLKSFD  397 (400)
T ss_pred             HHHHHHHHHHh
Confidence            99999998764

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=99.95  E-value=6.6e-25  Score=223.55  Aligned_cols=295  Identities=16%  Similarity=0.134  Sum_probs=206.8

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCc-Ccc-hHHHHHHhCCeEEEEecCC
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQ-YPL-YSASIALHGGTLVPYYLDE  246 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~-~~~-~~~~~~~~g~~~~~v~~~~  246 (533)
                      ..++|+.++++++    .+-+...|+++.|+++++..++..++ .++|+|++..+. |+. +..+++..|.+++.++.+.
T Consensus        33 ~~~~~~~la~~~~----~~~~~~~i~~~~~gt~~l~~~~~~~~-~~~~~vi~~~~~~~~~~~~~~a~~~g~~~~~i~~~~  107 (355)
T TIGR03301        33 TDQVRDRLLALAG----GDDNHTCVLLQGSGTFAVEATIGSLV-PRDGKLLVLINGAYGERLAKICEYLGIPHTDLNFSE  107 (355)
T ss_pred             HHHHHHHHHHHhc----CCCCCcEEEEeCCcHHHHHHHHHhcc-CCCCeEEEECCCchhhHHHHHHHHcCCceEEEecCC
Confidence            4566677776664    33222368889999999999999998 678887766555 443 4567788899999998864


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccH
Q 009517          247 ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSF  326 (533)
Q Consensus       247 ~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~  326 (533)
                        ++.+|++++++++++.    ++++.+++++++||||...+   +++|+++|++|++++|+|++++.    +..+ .++
T Consensus       108 --~~~~d~~~l~~~l~~~----~~~~~v~~~~~~~~~G~~~~---~~~i~~l~~~~~~~livD~~~s~----g~~~-~~~  173 (355)
T TIGR03301       108 --YEPPDLNRIEEALAAD----PDITHVATVHHETTTGILNP---LEAIAKVARSHGAVLIVDAMSSF----GAIP-IDI  173 (355)
T ss_pred             --CCCCCHHHHHHHHHhC----CCceEEEEEecCCcccchhH---HHHHHHHHHHcCCEEEEEecccc----CCcc-cch
Confidence              4588999999999752    25677888899999999987   89999999999999999987753    2111 122


Q ss_pred             HHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhh------------------hccccCCh
Q 009517          327 KKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA------------------SVNLCSNI  388 (533)
Q Consensus       327 ~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~------------------~~~~~~~~  388 (533)
                      ..    +   ..+   +++.|++|+++|++|  +||+++   ++++++.+....                  ...++++.
T Consensus       174 ~~----~---~~d---~~~~s~~K~l~~~~G--~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~  238 (355)
T TIGR03301       174 EE----L---DVD---ALIASANKCLEGVPG--FGFVIA---RRDLLEASAGNARSLYLDLYDQWAYMEKTGKWRFTPPT  238 (355)
T ss_pred             hh----c---Ccc---EEEecCCcccccCCc--eeEEEE---CHHHHHHhhCCCCCceeeHHHHHHHhhhcCCCCCCCcH
Confidence            11    1   123   778999998756566  699998   888887765210                  12245666


Q ss_pred             HHHHHHHHHcCCCCCCChhHHHHHHH--HHHHHHHHHHHHHHHHHHHhcCCCceEecC---CceeEEecccCCCHHHHHH
Q 009517          389 SGQILASLVMSPPKVGDESYESYCAE--RDGILSSLARRAKTLEDAFNSLEGITCNKA---EGAMYLFPRIQLPEKAIKA  463 (533)
Q Consensus       389 ~~q~a~~~~L~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~---~gg~~~~~~~~~~~~~~~~  463 (533)
                      ..+.++..+++.          ..++  .++..++++++++++++.|+++ |+.++.+   .+++++|+.++....    
T Consensus       239 ~~~~a~~~al~~----------~~~~g~~~~~~~~~~~~~~~~~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~----  303 (355)
T TIGR03301       239 HTVYAFAQALEE----------LEAEGGVPARIARYRRNRELLVDGLRAL-GFQPLLPERWQSPIIVSFLYPDDPD----  303 (355)
T ss_pred             HHHHHHHHHHHH----------HHHcccHHHHHHHHHHHHHHHHHHHHHc-CCeeecCCCCCCCcEEEEECCCCCc----
Confidence            776666666531          1111  4566778889999999999988 8876543   245566654431000    


Q ss_pred             HHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHH
Q 009517          464 AEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDF  523 (533)
Q Consensus       464 ~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~  523 (533)
                           . +... +.+.|.++||.+.||..+. .   ++|||++.  ++.++++++++.|+++
T Consensus       304 -----~-~~~~-~~~~l~~~gi~i~~~~~~~-~---~~iRis~~~~~~~~~i~~~~~~l~~~  354 (355)
T TIGR03301       304 -----F-DFDD-FYQELKERGFVIYPGKLTL-A---DTFRIGTIGEIDAADIERLLEAIKDA  354 (355)
T ss_pred             -----c-hHHH-HHHHHHHCCEEEECCcccc-c---cEEEEecCCCCCHHHHHHHHHHHHhh
Confidence                 0 1223 3455677899999987654 2   38999984  6889999999999875

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=99.95  E-value=3.6e-25  Score=225.27  Aligned_cols=301  Identities=16%  Similarity=0.175  Sum_probs=209.7

Q ss_pred             ccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcch----HHHHHHh
Q 009517          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLY----SASIALH  235 (533)
Q Consensus       160 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~----~~~~~~~  235 (533)
                      ...|+.+. ..+|++++|++.+      .  +..++++|+++|+..++. ++ .+||+|++++|+|+..    ...+...
T Consensus        46 y~r~~~pt-~~~le~~la~l~g------~--~~~~~~~sG~~ai~~~~~-ll-~~Gd~Vl~~~~~y~~t~~~~~~~~~~~  114 (366)
T PRK08247         46 YSRTGNPT-RGVLEQAIADLEG------G--DQGFACSSGMAAIQLVMS-LF-RSGDELIVSSDLYGGTYRLFEEHWKKW  114 (366)
T ss_pred             ccCCCCch-HHHHHHHHHHHhC------C--CcEEEEcCHHHHHHHHHH-Hh-CCCCEEEEecCCcCcHHHHHHHHhhcc
Confidence            34455554 7889999999975      2  335778888999998764 55 6999999999999974    3445568


Q ss_pred             CCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccc
Q 009517          236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN  315 (533)
Q Consensus       236 g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~  315 (533)
                      |++++.++.       .|++.+++++++      ++++|++++|+||+|.   ..++++|+++|+++|+++|+|++|...
T Consensus       115 G~~v~~vd~-------~d~~~l~~~i~~------~tklv~le~P~NP~~~---~~dl~~I~~la~~~g~~lIvD~t~~~~  178 (366)
T PRK08247        115 NVRFVYVNT-------ASLKAIEQAITP------NTKAIFIETPTNPLMQ---ETDIAAIAKIAKKHGLLLIVDNTFYTP  178 (366)
T ss_pred             CceEEEECC-------CCHHHHHHhccc------CceEEEEECCCCCCCc---HHHHHHHHHHHHHcCCEEEEECCCccc
Confidence            999888864       378999999876      7999999999999865   456999999999999999999999532


Q ss_pred             cccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCC-HHHHHHHHHhhh-ccccCChHHHHH
Q 009517          316 VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFS-AEVREQIYKVAS-VNLCSNISGQIL  393 (533)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~-~~~~~~l~~~~~-~~~~~~~~~q~a  393 (533)
                      .+.  .+   +           ..+..|++.|+||.++|..+++.|++++   + +++.+.+...+. ...+.+++.+.+
T Consensus       179 ~~~--~p---~-----------~~g~di~i~S~sK~~~g~~d~~~G~iv~---~~~~l~~~~~~~~~~~g~~~s~~~a~l  239 (366)
T PRK08247        179 VLQ--RP---L-----------EEGADIVIHSATKYLGGHNDVLAGLVVA---KGQELCERLAYYQNAAGAVLSPFDSWL  239 (366)
T ss_pred             ccc--Cc---h-----------hcCCcEEEeecceeccCCCceeeeEEec---ChHHHHHHHHHHHHhcCCCCChHHHHH
Confidence            221  11   0           0112488999999996555679999887   5 678787776665 445667778877


Q ss_pred             HHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceE--ecCCceeEEecccCCCHHHHHHHHhcCCCC
Q 009517          394 ASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITC--NKAEGAMYLFPRIQLPEKAIKAAEAEKTVP  471 (533)
Q Consensus       394 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~--~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~  471 (533)
                      +...|+              .+....++++++++.+.+.|++.|++..  .++.||+|.| .++. .....+.- ... .
T Consensus       240 ~~~~l~--------------tl~~r~~~~~~~a~~l~~~L~~~p~v~~v~~P~~gg~~sf-~~~~-~~~~~~~~-~~l-~  301 (366)
T PRK08247        240 LIRGMK--------------TLALRMRQHEENAKAIAAFLNEQPGVTDVLYPGRGGMLSF-RLQD-EEWVNPFL-KSL-K  301 (366)
T ss_pred             HHhccC--------------cHHHHHHHHHHHHHHHHHHHHhCCCeeEEecCCcCcEEEE-EECC-HHHHHHHH-HcC-C
Confidence            777664              1233445668899999999999888764  4448999998 4542 11100000 000 0


Q ss_pred             hHHHHHHHHHccceEEEcCCCCCCC----------CCCceEEEEecCCcCcHHHHHHHHHHHHHH
Q 009517          472 DAFYCRRLLNATGIVLVPGSGFGQV----------PGTWHFRCTILPQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       472 ~~~~~~~ll~~~gV~v~pg~~f~~~----------~g~~~iRis~~~~~e~i~~~~~~l~~~l~~  526 (533)
                      ...++..+.....+.+.|+..+...          -+.+.+|||+++  |+++.+++.|++++++
T Consensus       302 ~~~~~~slg~~~sl~~~p~~~~~~~~~~~~r~~~gi~~~~~R~svGl--E~~~dl~~dl~~al~~  364 (366)
T PRK08247        302 LITFAESLGGVESFITYPATQTHADIPEEIRIANGVCNRLLRFSVGI--ENVEDLIADLKQAFKQ  364 (366)
T ss_pred             cceEccCCCCCceEEECCcccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHHhh
Confidence            1111222233456777788655211          113489999996  4578888888888875

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=99.95  E-value=1.8e-25  Score=231.64  Aligned_cols=369  Identities=13%  Similarity=0.088  Sum_probs=228.8

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      ++.++++...++.||++      +||+..|....                      ..+++    ++++++++.+++.+.
T Consensus        18 ~~~~a~G~~l~D~dG~~------ylD~~~g~~~~----------------------~lGh~----~p~v~~a~~~ql~~~   65 (420)
T TIGR00700        18 FAARAEGAILEDVDGNR------LIDFASGIAVL----------------------NIGHS----HPRVVDAVRTQVAEF   65 (420)
T ss_pred             eEEeeeeeEEEeCCCCE------EEECccCHHhc----------------------cCCCC----CHHHHHHHHHHHHhc
Confidence            45667777777778777      88876664322                      11111    689999999999863


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCC-CeEEEcCCcCcchHHHHHH
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-DGILCPIPQYPLYSASIAL  234 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vlv~~p~~~~~~~~~~~  234 (533)
                      ..   ..+...  ..+.+..+|+.+.+... ....++++++++|++|++.+++..+...| .+|+....+|++....+..
T Consensus        66 ~~---~~~~~~--~~~~~~~la~~l~~~~p-~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~  139 (420)
T TIGR00700        66 TH---TCFMVT--PYEGYVALAEKLNRIAP-GSGPKKSVFFNSGAEAVENAVKIARSYTGRPGVVAFDHGFHGRTNMTMA  139 (420)
T ss_pred             cC---cccccc--CChHHHHHHHHHHHhCC-CCCCCEEEEeCCcHHHHHHHHHHHHHhcCCCcEEEECCCcCCCcHHHHH
Confidence            21   111111  12233345555543321 01236899999999999999998863334 6788899999997654443


Q ss_pred             hCCe--------------EEEEecCCCC---------CCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCC-CHH
Q 009517          235 HGGT--------------LVPYYLDEAT---------GWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVL-AEE  290 (533)
Q Consensus       235 ~g~~--------------~~~v~~~~~~---------~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~-s~~  290 (533)
                      ....              +..++.....         .+.-+++.+++.+... ..+.++.+||++..+.-+|+++ +++
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iAavi~Epi~g~~G~~~~~~~  218 (420)
T TIGR00700       140 LTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAARAIFVID-VGANNVAALVIEPVQGEGGFIVPAKG  218 (420)
T ss_pred             hcCCCcccccCCCCCCCCcEEeCCCccccccccccchhHHHHHHHHHHHHHhh-cCCCcEEEEEECCccCCCCCccCCHH
Confidence            3111              1112221000         0000245566665311 1123788888887777788855 555


Q ss_pred             HHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCH
Q 009517          291 NQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSA  370 (533)
Q Consensus       291 ~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~  370 (533)
                      .+++|.++|++||+++|+||+|++|.+.|.  ..++..     .+..+|     +.+|||++ + +|+|+||+++   ++
T Consensus       219 ~l~~l~~lc~~~gillI~DEV~tg~gr~g~--~~a~~~-----~~~~pD-----i~~lsK~l-~-~G~pig~v~~---~~  281 (420)
T TIGR00700       219 FVPALLDWCREHGIVFIADEVQTGFARTGA--MFACEH-----EGPEPD-----LITTAKSL-A-DGLPLSGVTG---RA  281 (420)
T ss_pred             HHHHHHHHHHHcCCEEEEEecccCCcccch--hHHHhh-----cCCCCC-----EEEeeccc-c-CCcceEEEEe---cH
Confidence            699999999999999999999999877653  222211     111466     55699999 5 7999999998   99


Q ss_pred             HHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCceEecCC
Q 009517          371 EVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFN----SLEGITCNKAE  445 (533)
Q Consensus       371 ~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~~g~~~~~~~  445 (533)
                      ++++.+..... .+++.++++|+++.+.|+..           + .....++.++..+.+++.|+    ++|.+..+++.
T Consensus       282 ~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l-----------~-~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~  349 (420)
T TIGR00700       282 EIMDAPAPGGLGGTYAGNPLACAAALAVLAII-----------E-SEGLIERARQIGRLVTDRLTTLKAVDPRIGDVRGL  349 (420)
T ss_pred             HHHhhcCCCCcCCCCCcCHHHHHHHHHHHHHH-----------H-hccHHHHHHHHHHHHHHHHHHHHhhCCCEEEeecc
Confidence            99888764433 77899999999998777411           0 01122223333333333333    34556677888


Q ss_pred             ceeEEecccCCCHHHHHHHHhcCCC-ChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHH
Q 009517          446 GAMYLFPRIQLPEKAIKAAEAEKTV-PDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTD  522 (533)
Q Consensus       446 gg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~  522 (533)
                      |.|+ |+.+..+..      ..... ....+ .+.+.++||++.||..|+     ++|||++.  .++++|++++++|++
T Consensus       350 G~~~-~i~~~~~~~------~~~~~~~~~~l-~~~~~~~Gv~i~p~~~f~-----~~lRl~p~l~~~~~~l~~~~~~l~~  416 (420)
T TIGR00700       350 GAMI-AVELVDPGT------TEPDAGLAERI-ATAAHAAGLLLLTCGMFG-----NIIRFLPPLTIGDELLSEGLDILCA  416 (420)
T ss_pred             ceEE-EEEEecCCC------CCccHHHHHHH-HHHHHHCCeEEeccCCCC-----CEEEEECCCCcCHHHHHHHHHHHHH
Confidence            6554 544421100      00000 01222 233467999999988775     28999985  689999999999998


Q ss_pred             HHH
Q 009517          523 FHK  525 (533)
Q Consensus       523 ~l~  525 (533)
                      +++
T Consensus       417 ~l~  419 (420)
T TIGR00700       417 ILA  419 (420)
T ss_pred             Hhh
Confidence            874

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=99.95  E-value=2.2e-24  Score=221.75  Aligned_cols=332  Identities=11%  Similarity=0.109  Sum_probs=221.0

Q ss_pred             CHHHHHHHHHHHhcCCCC----CccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCC
Q 009517          141 SADSIERAWQILDQIPGR----ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND  216 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~----~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd  216 (533)
                      ++.+++++.+......+.    ....+.......++++.+|++++        .+++++++|+++++..++..++ .+||
T Consensus        33 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g--------~~~~~~~~g~t~a~~~al~~l~-~~gd  103 (387)
T PRK09331         33 TPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLG--------MDEARVTHGAREGKFAVMHSLC-KKGD  103 (387)
T ss_pred             CHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHhc-CCCC
Confidence            688888888877542210    01222223347889999999874        3568899999999999999998 8999


Q ss_pred             eEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHH-hcCCCeeEEEEeCCCCCCccCCCHHHHHHH
Q 009517          217 GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAK-AKGITVRALVVINPGNPTGQVLAEENQRAI  295 (533)
Q Consensus       217 ~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~-~~g~~~~~iil~~p~NPtG~~~s~~~l~~i  295 (533)
                      +|+++.++|......+...|++++.++.+.+.++.+|++.+++++++.. ..++++++|++++|+||||.+.+   +++|
T Consensus       104 ~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~---l~~I  180 (387)
T PRK09331        104 YVVLDGLAHYTSYVAAERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLAD---AKKV  180 (387)
T ss_pred             EEEECCCchHHHHHHHHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCccccc---HHHH
Confidence            9999999988877778889999999998433467899999999997631 11246899999999999999887   9999


Q ss_pred             HHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHH
Q 009517          296 VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQ  375 (533)
Q Consensus       296 ~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~  375 (533)
                      +++|+++|+++|+|++|..    |..+ .+..    .+   ..|   +++.|++|++ + .+.++||+++   ++++++.
T Consensus       181 ~~la~~~g~~livD~a~~~----g~~~-~~~~----~~---g~D---~~~~s~~K~l-~-~~~~~G~l~~---~~~~i~~  240 (387)
T PRK09331        181 AKVAHEYGIPFLLNGAYTV----GRMP-VDGK----KL---GAD---FIVGSGHKSM-A-ASAPSGVLAT---TEEYADK  240 (387)
T ss_pred             HHHHHHcCCEEEEECCccc----CCcC-CCHH----Hc---CCC---EEEeeCcccc-c-CCCCEEEEEE---CHHHHhh
Confidence            9999999999999999974    2111 1111    11   234   7789999998 4 3568999988   8888877


Q ss_pred             HHHhhh---------ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEec---
Q 009517          376 IYKVAS---------VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNK---  443 (533)
Q Consensus       376 l~~~~~---------~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~---  443 (533)
                      +.+...         ...+.++....++...+.          ...+..+ ..++..++.+++++.|++++|++++.   
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal~----------~~~~~~~-~~~~~~~~~~~l~~~L~~l~g~~~~~~~~  309 (387)
T PRK09331        241 VFRTSRKFGVKEVELLGCTLRGAPLVTLMASFP----------HVVERVK-RWDEEVKKARWFVDELEKIEGFKQLGEKP  309 (387)
T ss_pred             cccccCCCcccceeeeceecCchHHHHHHHHHH----------HHHHHHH-HHHHHHHHHHHHHHHHhcCCCEEEeccCc
Confidence            654321         011122222222222221          1222222 33445667778999999998998873   


Q ss_pred             CCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEe-cCCcCcHHHHHHHHHH
Q 009517          444 AEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTI-LPQEDKIPAIVTRLTD  522 (533)
Q Consensus       444 ~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~-~~~~e~i~~~~~~l~~  522 (533)
                      ...++ +.+  ..| .........+. ....+. +.|+++||...+.      .....+|+.. +.+++++++++++|++
T Consensus       310 ~~~~i-~~~--~~~-~~~~~~~~~~~-~~~~~~-~~L~~~gI~~~~~------~~~~i~ri~~~g~t~~di~~l~~aL~~  377 (387)
T PRK09331        310 RNHDL-MKF--ETP-SFDEIAKKHKR-RGFFLY-EELKKRGIHGIKP------GATKEFKLSTYGLTWEQVEYVADAFKE  377 (387)
T ss_pred             CcCCe-EEE--eCC-chhHHhhhccc-cchhHH-HHHHHcCceEEcc------CCceEEEEEeccCCHHHHHHHHHHHHH
Confidence            22333 222  222 11110000011 122333 5556789985431      1223678877 4799999999999998


Q ss_pred             HHHHH
Q 009517          523 FHKNF  527 (533)
Q Consensus       523 ~l~~~  527 (533)
                      +++++
T Consensus       378 i~~~~  382 (387)
T PRK09331        378 IAEKY  382 (387)
T ss_pred             HHHhc
Confidence            87754

>PRK02948 cysteine desulfurase; Provisional

Probab=99.95  E-value=1.4e-25  Score=230.63  Aligned_cols=328  Identities=14%  Similarity=0.137  Sum_probs=221.5

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCC----CcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc---C
Q 009517          141 SADSIERAWQILDQIPGRATGAYSH----SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR---S  213 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~----~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~---~  213 (533)
                      |+.+++++.+.+.....+....|..    ..-+.++|+.++++++      .++++|++|+|+++++..++..++.   .
T Consensus        13 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g------~~~~~i~~~~g~t~a~~~~~~~~~~~~~~   86 (381)
T PRK02948         13 SKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIG------GEEQGIYFTSGGTESNYLAIQSLLNALPQ   86 (381)
T ss_pred             CHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhC------CCCCeEEEeCcHHHHHHHHHHHHHHhccC
Confidence            7889999888776432211111110    1114466677777664      5678999999999999998888751   3


Q ss_pred             CCCeEEEcCCcCcch---HHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHH
Q 009517          214 ENDGILCPIPQYPLY---SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE  290 (533)
Q Consensus       214 ~gd~Vlv~~p~~~~~---~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~  290 (533)
                      +|+.|++....|+.+   ...++..|+++..+++++  ++.+|+++|++++++      ++++|++++|+||||.+++  
T Consensus        87 ~g~~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~l~~------~~~lv~~~~~~n~tG~~~~--  156 (381)
T PRK02948         87 NKKHIITTPMEHASIHSYFQSLESQGYTVTEIPVDK--SGLIRLVDLERAITP------DTVLASIQHANSEIGTIQP--  156 (381)
T ss_pred             CCCEEEECCcccHHHHHHHHHHHhCCCEEEEEeeCC--CCCCCHHHHHHhcCC------CCEEEEEECCcCCcEeehh--
Confidence            689999988666654   445566799999999874  457899999999875      7899999999999999998  


Q ss_pred             HHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCH
Q 009517          291 NQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSA  370 (533)
Q Consensus       291 ~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~  370 (533)
                       +++|.++|+++|+++|+|+++.   + +..+ ..+    .++      ...+++.|++|.+ |++|  +|++++   ++
T Consensus       157 -~~~I~~l~~~~~~~vivD~~~~---~-g~~~-~~~----~~~------~~d~~~~s~~K~~-gp~G--~G~l~~---~~  214 (381)
T PRK02948        157 -IAEIGALLKKYNVLFHSDCVQT---F-GKLP-IDV----FEM------GIDSLSVSAHKIY-GPKG--VGAVYI---NP  214 (381)
T ss_pred             -HHHHHHHHHHcCCEEEEEChhh---c-cccc-cCc----ccC------CCCEEEecHHhcC-CCCc--EEEEEE---cC
Confidence             7889999999999999997654   2 2111 111    111      1236789999987 7888  788876   54


Q ss_pred             HH-HHHHHHh----hh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecC
Q 009517          371 EV-REQIYKV----AS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKA  444 (533)
Q Consensus       371 ~~-~~~l~~~----~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~  444 (533)
                      ++ +..+...    .. ..++++..++.++.++++.          ..+++++.++++++.++++++.|+++ |+++...
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~----------~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~v~~~  283 (381)
T PRK02948        215 QVRWKPVFPGTTHEKGFRPGTVNVPGIAAFLTAAEN----------ILKNMQEESLRFKELRSYFLEQIQTL-PLPIEVE  283 (381)
T ss_pred             CCCCCCcccCCCCCCCcCCCCccHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEe
Confidence            43 1111100    01 2356788888888877741          22456777888999999999999998 6654432


Q ss_pred             CceeEEecc---cCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCC----------------CCCCceEEEE
Q 009517          445 EGAMYLFPR---IQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ----------------VPGTWHFRCT  505 (533)
Q Consensus       445 ~gg~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~----------------~~g~~~iRis  505 (533)
                      ....+.+..   +..+          +.+ ...+. ..|.++||.+.+|..+..                +...++||||
T Consensus       284 ~~~~~~~~~i~~~~~~----------~~~-~~~~~-~~l~~~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis  351 (381)
T PRK02948        284 GHSTSCLPHIIGVTIK----------GIE-GQYTM-LECNRRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFS  351 (381)
T ss_pred             CCCccCcCCEEEEEeC----------CCC-HHHHH-HhcccCCEEEEchHhcCCCCCCCCHHHHHcCCChHHhCceEEEE
Confidence            211111111   1111          111 23333 345778999999875311                0123589999


Q ss_pred             ec--CCcCcHHHHHHHHHHHHHHHHH
Q 009517          506 IL--PQEDKIPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       506 ~~--~~~e~i~~~~~~l~~~l~~~~~  529 (533)
                      +.  +++++++++++.|+++++++.+
T Consensus       352 ~~~~~t~~di~~l~~~l~~~~~~~~~  377 (381)
T PRK02948        352 FGQQTTKDQIDTTIHALETIGNQFYR  377 (381)
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            96  7899999999999998876543

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=99.94  E-value=3.6e-24  Score=221.74  Aligned_cols=327  Identities=16%  Similarity=0.120  Sum_probs=220.7

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcc----cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc-CCC
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQG----IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-SEN  215 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G----~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~g  215 (533)
                      ++++++++.+++.+... ....+....|    ..+|.+.+|+++    |    .+..+++++|++|+..++..+.. .+|
T Consensus        61 ~p~v~~a~~~~~~~~~~-~~~~s~~~~~~~~~~~~le~~la~~~----g----~~~~~~~~SG~~An~~ai~~l~~~~~g  131 (406)
T PRK13393         61 HPAVLAAMHEALDTCGA-GAGGTRNISGTNHYHVLLEAELADLH----G----KEAALLFTSGYVSNWAALSTLGSRLPG  131 (406)
T ss_pred             CHHHHHHHHHHHHHcCC-CCcccccccCChHHHHHHHHHHHHHh----C----CCcEEEeCCcHHHHHHHHHHhhcCCCC
Confidence            68999999999886432 1111111122    456666666665    3    24666666666899999987651 267


Q ss_pred             CeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHH
Q 009517          216 DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAI  295 (533)
Q Consensus       216 d~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i  295 (533)
                      +.|+.....|......+...|.++..++.       .|++.+++.++...  ..++++|++++++|++|.+.+   +++|
T Consensus       132 ~~I~~~~~~H~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~--~~~~~~v~~~~v~~~~G~~~~---l~~i  199 (406)
T PRK13393        132 CVILSDELNHASMIEGIRHSRAEKRIFRH-------NDPADLERKLSDLD--PHRPKLVAFESVYSMDGDIAP---IAEI  199 (406)
T ss_pred             CEEEEccchhHHHHHHHHHcCCeEEEeCC-------CCHHHHHHHHHhcc--CCCCEEEEEcCCCCCCCchhC---HHHH
Confidence            76666666776677777778887766653       37888888776421  125788999999999999999   9999


Q ss_pred             HHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHH
Q 009517          296 VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQ  375 (533)
Q Consensus       296 ~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~  375 (533)
                      .++|+++|+++|+||+|....++...  ..+.. ..++   .++ ..|+++||||++ |++|   ||+++   ++++++.
T Consensus       200 ~~l~~~~~~~livDea~~~g~~g~~G--~g~~~-~~~~---~~~-~~i~~~tlsKa~-g~~G---G~~~~---~~~~~~~  265 (406)
T PRK13393        200 CDVAEKHGAMTYLDEVHAVGLYGPRG--GGIAE-REGL---ADR-LTIIEGTLAKAF-GVMG---GYITG---SAALCDF  265 (406)
T ss_pred             HHHHHHcCCEEEEECCccccccCCCC--Cchhh-hcCC---CCC-CeEEEEeCchhh-cccC---ceeeC---CHHHHHH
Confidence            99999999999999999843443211  11111 1111   122 247789999999 6666   89887   8899888


Q ss_pred             HHHhhhc---cccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEec
Q 009517          376 IYKVASV---NLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFP  452 (533)
Q Consensus       376 l~~~~~~---~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~  452 (533)
                      +......   +.+.++..+.++.++|+.           .+.....+.++.++++++++.|+++ |+.++++.+.++.+ 
T Consensus       266 l~~~~~~~~~t~~~~p~~~aa~~aaL~~-----------~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~i~~v-  332 (406)
T PRK13393        266 IRSFASGFIFTTSLPPAVAAGALASVRH-----------LKASSAERERHQDRVARLRARLDKA-GIPHLPNPSHIVPV-  332 (406)
T ss_pred             HHHhCcCceecCccCHHHHHHHHHHHHH-----------HhhCHHHHHHHHHHHHHHHHHHHHc-CCCcCCCCCCeEEE-
Confidence            8765432   345567777777777642           1111122355678888999999887 88777777776544 


Q ss_pred             ccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 009517          453 RIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~~  527 (533)
                      .+..+.            ....+...+++++||.+.++.....+.+..+|||++.  ++++++++++++|+++++++
T Consensus       333 ~~~~~~------------~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~t~edid~l~~~l~~~~~~~  397 (406)
T PRK13393        333 MVGDPV------------LCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHTDADIEHLVQALSEIWARL  397 (406)
T ss_pred             EeCCHH------------HHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHhc
Confidence            222110            1234455555557999998755443445568999996  89999999999999987754

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=99.94  E-value=7.8e-25  Score=225.15  Aligned_cols=329  Identities=16%  Similarity=0.129  Sum_probs=226.7

Q ss_pred             CHHHHHHHHHHHhcCCCC--CccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc----CC
Q 009517          141 SADSIERAWQILDQIPGR--ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR----SE  214 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~----~~  214 (533)
                      ++.|++++.+.+.+...+  ..+.|+ ..+...+++++++++.. .|. .++++|++|+|+++++..+++.+..    ++
T Consensus        12 ~~~v~~~~~~~~~~~~~n~~~~~~~~-~~~~~~l~~a~~~~~~~-~~~-~~~~~i~~t~g~teal~~~~~~~~~~~~~~~   88 (382)
T TIGR03403        12 DPKVKELMDPFFCDIYGNPNSLHQFG-TATHPAIAEALDKLYKG-INA-RDLDDIIITSCATESNNWVLKGVYFDEILKG   88 (382)
T ss_pred             CHHHHHHHHHHHHhcCcCCccccHHH-HHHHHHHHHHHHHHHHH-cCc-CCCCeEEEeCCHHHHHHHHHHHHHHhhcccC
Confidence            688999988877653221  122344 34577899999888853 232 2578999999999999999987621    34


Q ss_pred             -CCeEEEcCCcCcchHH---HHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHH
Q 009517          215 -NDGILCPIPQYPLYSA---SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE  290 (533)
Q Consensus       215 -gd~Vlv~~p~~~~~~~---~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~  290 (533)
                       +++|+++...|+.+..   .++..|++++.+++++  ++.+|++.+++++++      +++++++++|+||||.+++  
T Consensus        89 ~~~~vi~~~~e~ps~~~~~~~~~~~G~~v~~v~~~~--~g~~d~~~l~~~i~~------~t~lv~~~~~~n~tG~~~~--  158 (382)
T TIGR03403        89 GKNHIITTEVEHPAVRATCAFLESLGVEVTYLPINE--QGTITAEQVREAITE------KTALVSVMWANNETGMIFP--  158 (382)
T ss_pred             CCCEEEEcCCccHHHHHHHHHHHHCCCEEEEEecCC--CCCCCHHHHHHhccc------CCeEEEEEcccCCCccccC--
Confidence             4789999877665544   4556799999999874  357899999999976      7899999999999999999  


Q ss_pred             HHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCH
Q 009517          291 NQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSA  370 (533)
Q Consensus       291 ~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~  370 (533)
                       +++|.++|+++|+++|+|+++..    +..+ .++    .++   ..|   +++.|++|.+ |++|+  |++.+   .+
T Consensus       159 -~~~I~~la~~~g~~~ivD~a~~~----g~~~-~~~----~~~---~~D---~~~~s~~K~~-gp~G~--g~l~v---r~  216 (382)
T TIGR03403       159 -IKEIGEICKERGVLFHTDAVQAI----GKIP-VDV----QKA---GVD---FLSFSAHKFH-GPKGV--GGLYI---RK  216 (382)
T ss_pred             -HHHHHHHHHHcCCEEEEechhhc----CCCc-cCc----ccc---CCC---EEEEcchhhC-CCCce--EEEEE---CC
Confidence             77899999999999999999763    2211 111    111   233   7788999976 77785  66655   22


Q ss_pred             HH--HHHHH---Hhh-hccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecC
Q 009517          371 EV--REQIY---KVA-SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKA  444 (533)
Q Consensus       371 ~~--~~~l~---~~~-~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~  444 (533)
                      ..  ...+.   ... ...++++..++.++..+++          ...+.++...+++++.++++.+.|.+++|+.++.+
T Consensus       217 ~~~~~p~~~g~~~~~~~~~gt~~~~~~~al~~al~----------~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~  286 (382)
T TIGR03403       217 GVELTPLFHGGEHMGGRRSGTLNVPYIVAMGEAMR----------LANEYLDFEKSHVRRLRDRLEDALLELPDVFVVGD  286 (382)
T ss_pred             CCCCCCcccCCCCCCCcccCCcChHHHHHHHHHHH----------HHHHhHHHHHHHHHHHHHHHHHHHhcCCCEEEECC
Confidence            21  01110   001 1235577777777776663          12233566678889999999999999889988865


Q ss_pred             C----ceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCC-------------C---CCceEEE
Q 009517          445 E----GAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQV-------------P---GTWHFRC  504 (533)
Q Consensus       445 ~----gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~-------------~---g~~~iRi  504 (533)
                      .    .++. .+.++.            . +..... ..|.++||.++.|+.+...             .   ..+.||+
T Consensus       287 ~~~~~~~~~-~~~~~~------------~-~~~~~~-~~L~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~  351 (382)
T TIGR03403       287 REHRVPNTI-LISIKG------------V-EGEAML-WDLNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRL  351 (382)
T ss_pred             CCCCcCCEE-EEEeCC------------C-CHHHHH-HhhccCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeEEE
Confidence            4    2332 222331            1 123333 3467889999988655210             0   1247999


Q ss_pred             Eec--CCcCcHHHHHHHHHHHHHHHHH
Q 009517          505 TIL--PQEDKIPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       505 s~~--~~~e~i~~~~~~l~~~l~~~~~  529 (533)
                      |+.  .++++|++++++|++++++++.
T Consensus       352 s~~~~~t~~did~~~~~l~~~~~~~~~  378 (382)
T TIGR03403       352 SLSRFTTEEEIDYTIEVFKKAVQRLRA  378 (382)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            996  8999999999999999887654

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=99.94  E-value=2e-24  Score=220.64  Aligned_cols=295  Identities=14%  Similarity=0.069  Sum_probs=206.9

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcch--HHHHHHhCCeEEEEecCCC
Q 009517          170 KGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLY--SASIALHGGTLVPYYLDEA  247 (533)
Q Consensus       170 ~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~--~~~~~~~g~~~~~v~~~~~  247 (533)
                      .++|+.+++++    |.+-+.+.|++|+|+++++..++..+. .+||.+++..+.+++.  ...++..|.+++.+++++ 
T Consensus        38 ~~~r~~la~l~----~~~~~~~~i~~t~~~t~al~~~~~~l~-~~~~~vlv~~~~~~~~~~~~~a~~~g~~~~~v~~~~-  111 (363)
T TIGR02326        38 EQIRQQLLALA----TAEEGYTSVLLQGSGTFAVEAVIGSAV-PKDGKLLVVINGAYGARIVQIAEYLGIPHHVVDTGE-  111 (363)
T ss_pred             HHHHHHHHHHh----CCCCCceEEEEcCCCHHHHHHHHHhcC-CCCCeEEEEeCChhhHHHHHHHHHcCCceEEEeCCC-
Confidence            44556666655    432223479999999999999999998 6888877766665554  466788899999999864 


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHH
Q 009517          248 TGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFK  327 (533)
Q Consensus       248 ~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~  327 (533)
                       +..+|++.+++++++.    ++++++.+++++||||+.++   +++|.++|+++|+++|+|++++   + |..+ .++.
T Consensus       112 -~~~~d~~~l~~~l~~~----~~~~~v~~~~~~~~tG~~~~---i~~I~~l~~~~g~~livD~~~~---~-g~~~-~~~~  178 (363)
T TIGR02326       112 -VEPPDVVEVEAILAAD----PAITHIALVHCETTTGILNP---IEAVAKLAHRHGKVTIVDAMSS---F-GGIP-IDIA  178 (363)
T ss_pred             -CCCCCHHHHHHHHhhC----CCccEEEEEeecCCccccCc---HHHHHHHHHHcCCEEEEEcccc---c-cCcc-cchh
Confidence             4478999999998762    24677888899999999998   8899999999999999998875   3 2222 2221


Q ss_pred             HHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhh------------------h-ccccCCh
Q 009517          328 KVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA------------------S-VNLCSNI  388 (533)
Q Consensus       328 ~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~------------------~-~~~~~~~  388 (533)
                          ++   +.|   +++.|++|++.|++|  +||+++   +++.++.+....                  . ..++++.
T Consensus       179 ----~~---~~D---~~~~s~~K~l~~p~G--~G~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~  243 (363)
T TIGR02326       179 ----EL---HID---YLISSANKCIQGVPG--FGFVIA---RQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPT  243 (363)
T ss_pred             ----hc---Ccc---EEEecCccccccCCc--ceEEEE---CHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcH
Confidence                22   233   778999998866666  699988   887776543210                  0 1235667


Q ss_pred             HHHHHHHHHcCCCCCCChhHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCceEecC---CceeEEecccCCCHHHHHH
Q 009517          389 SGQILASLVMSPPKVGDESYESYCA--ERDGILSSLARRAKTLEDAFNSLEGITCNKA---EGAMYLFPRIQLPEKAIKA  463 (533)
Q Consensus       389 ~~q~a~~~~L~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~---~gg~~~~~~~~~~~~~~~~  463 (533)
                      ..+.++..+++.          +.+  .++++.++++++++++++.|+++ |+.++.+   ..+...|+.++....    
T Consensus       244 ~~~~al~~al~~----------l~~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~----  308 (363)
T TIGR02326       244 HVVHAFAQALLE----------LEKEGGVAARHQRYQQNQKTLVAGMRAL-GFEPLLDDEIQSPIITSFYSPEDPD----  308 (363)
T ss_pred             HHHHHHHHHHHH----------HHHhhCHHHHHHHHHHHHHHHHHHHHHc-CCeeccCcccCCceEEEEECCCCCC----
Confidence            777776666531          112  14567788999999999999988 8776543   344445543331100    


Q ss_pred             HHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEe-c-CCcCcHHHHHHHHHHHH
Q 009517          464 AEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTI-L-PQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       464 ~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~-~-~~~e~i~~~~~~l~~~l  524 (533)
                           . +...+ .+.|+++||.+.||..+.    .++|||++ + .+.+++++++++|++++
T Consensus       309 -----~-~~~~v-~~~L~~~gi~v~~g~~~~----~~~iRi~~~~~~~~edv~~~l~~l~~~l  360 (363)
T TIGR02326       309 -----Y-RFADF-YQRLKEQGFVIYPGKVSQ----VDCFRIGNIGEVDAADITRLLTAIGKAM  360 (363)
T ss_pred             -----C-CHHHH-HHHHHHCCEEEECCcCCC----CCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence                 0 12333 355677899999987663    23899996 5 78999999999998875

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=99.94  E-value=5.5e-25  Score=229.11  Aligned_cols=373  Identities=12%  Similarity=0.079  Sum_probs=237.3

Q ss_pred             chHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhc
Q 009517           75 EIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQ  154 (533)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~  154 (533)
                      .++.++++...++.||++      +||+..|....                      ..+++    ++++++++.+++.+
T Consensus        40 ~~i~~~~G~~l~D~dG~~------ylD~~~g~~~~----------------------~lGh~----~p~v~~ai~~q~~~   87 (443)
T PRK06058         40 VYVARAGGGIVEDVDGNR------LIDLGSGIAVT----------------------SVGNS----APRVVEAVREQVAR   87 (443)
T ss_pred             ceEEeeeeeEEEeCCCCE------EEEcCcchhhh----------------------ccCCC----CHHHHHHHHHHHHh
Confidence            366778888888888888      77776654221                      11111    68999999999986


Q ss_pred             CCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCC-CCeEEEcCCcCcchHHHHH
Q 009517          155 IPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSE-NDGILCPIPQYPLYSASIA  233 (533)
Q Consensus       155 ~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~-gd~Vlv~~p~~~~~~~~~~  233 (533)
                      ..     .+.......+.+..+|+.+.+..+. ...+.++++++|++|++.+++..+... .++|+...++|+++.....
T Consensus        88 ~~-----~~~~~~~~~~~~~~la~~l~~~~p~-~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~al  161 (443)
T PRK06058         88 FT-----HTCFMVTPYEGYVAVAEQLNRLTPG-DHEKRSALFNSGAEAVENAVKIARSYTGRQAVVVFDHAYHGRTNLTM  161 (443)
T ss_pred             cc-----CccccccCCHHHHHHHHHHHHhCCC-CCCCEEEEeCCcHHHHHHHHHHHHHhhCCCeEEEECCCcCcChHHHH
Confidence            31     1222222345666677777654321 112589999999999999999765223 3789999999999875544


Q ss_pred             HhCC--------------eEEEEecCCC----CCCCCCH-HHHHHHHHHHHh--cCCCeeEEEEeCCCCCCccC-CCHHH
Q 009517          234 LHGG--------------TLVPYYLDEA----TGWGLET-SEVKKQLEAAKA--KGITVRALVVINPGNPTGQV-LAEEN  291 (533)
Q Consensus       234 ~~g~--------------~~~~v~~~~~----~~~~ld~-~~l~~~i~~~~~--~g~~~~~iil~~p~NPtG~~-~s~~~  291 (533)
                      ....              .+..++....    .++..+. +.+++.++...+  .+.++.+||++..+.-.|++ ++++.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EPi~g~gG~~~p~~~y  241 (443)
T PRK06058        162 ALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARAITVIEKQVGADNLAAVIIEPIQGEGGFIVPAEGF  241 (443)
T ss_pred             hhcCCCcccccccCCCCCCceEcCCCcccccccccccchHHHHHHHHHHHHHhhCCCceEEEEECCccCCCCCcCCCHHH
Confidence            3211              1111221100    0001111 112222211110  12367777765444445654 56888


Q ss_pred             HHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHH
Q 009517          292 QRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAE  371 (533)
Q Consensus       292 l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~  371 (533)
                      +++|.++|++||+++|+||++++|.+.|.  ...     .+..++.||     +.+++|.+ | .|+|+|++++   +++
T Consensus       242 l~~lr~lc~~~gillI~DEV~tGfgRtG~--~fa-----~~~~gv~PD-----iv~~gK~l-~-~G~Pi~av~~---~~~  304 (443)
T PRK06058        242 LPALLEWCRENGVVFIADEVQTGFARTGA--WFA-----CEHEGIVPD-----LITTAKGI-A-GGLPLSAVTG---RAE  304 (443)
T ss_pred             HHHHHHHHHHcCCEEEEeccccCCCcChh--hhH-----HHhcCCCCC-----EEEEcccc-c-CCCccEEEEE---cHH
Confidence            99999999999999999999999876653  111     122223677     45678999 5 6999999998   899


Q ss_pred             HHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCceEecCCc
Q 009517          372 VREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL----EGITCNKAEG  446 (533)
Q Consensus       372 ~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~g  446 (533)
                      +++.+..... .|++.++++++++.+.|+.           .+ .+.+.++.+++.+++.+.|+++    +.+.-+++.|
T Consensus       305 i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~-----------~~-~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G  372 (443)
T PRK06058        305 IMDAPHPGGLGGTYGGNPVACAAALAAIET-----------IE-EDDLVARARQIEALMTDRLRALAAEDDRIGDVRGRG  372 (443)
T ss_pred             HHhhccCCCCCCCCCCCHHHHHHHHHHHHH-----------HH-HcCHHHHHHHHHHHHHHHHHHHHhhCCcEEeeeccc
Confidence            9888765433 7889999999999998841           11 1346667777778888888764    3345578899


Q ss_pred             eeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEe--cCCcCcHHHHHHHHHHHH
Q 009517          447 AMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTI--LPQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       447 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~--~~~~e~i~~~~~~l~~~l  524 (533)
                      .|+.+.-...+..      .....-...++ ..+.++||++.|+..|+.     +||+.+  .+++++|++++++|++++
T Consensus       373 ~~~~i~~~~~~~~------~~~~~~~~~l~-~~~~~~Gv~~~~~~~~~~-----~lr~~Ppl~~t~~~i~~~~~~l~~~l  440 (443)
T PRK06058        373 AMIAIELVKPGTT------EPDAELTKALA-AAAHAAGVIVLTCGTYGN-----VIRLLPPLVIGDELLREGLDVLEAAL  440 (443)
T ss_pred             eEEEEEEecCCCC------CCcHHHHHHHH-HHHHHCCeEEeccCCCCC-----EEEEECCCccCHHHHHHHHHHHHHHH
Confidence            8876532221100      00000012223 334568999998755542     899986  489999999999999998


Q ss_pred             HH
Q 009517          525 KN  526 (533)
Q Consensus       525 ~~  526 (533)
                      ++
T Consensus       441 ~~  442 (443)
T PRK06058        441 AD  442 (443)
T ss_pred             Hh
Confidence            65

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=99.94  E-value=4.3e-24  Score=218.64  Aligned_cols=299  Identities=14%  Similarity=0.073  Sum_probs=208.7

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcch--HHHHHHhCCeEEEEecCC
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLY--SASIALHGGTLVPYYLDE  246 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~--~~~~~~~g~~~~~v~~~~  246 (533)
                      ..++|+.++++++    .+-+.+.|+++.|+++++..++..+. .+||+|+++.++|.+.  ...++..|++++.++.++
T Consensus        39 ~~~~~~~l~~l~~----~~~~~~~i~~~~~gt~~l~~~~~~l~-~~~~~vlv~~~~~~~~~~~~~~~~~g~~~~~i~~~~  113 (368)
T PRK13479         39 TASVRAKLVAIAT----GEEGYTCVPLQGSGTFSVEAAIGSLV-PRDGKVLVPDNGAYGARIAQIAEYLGIAHVVLDTGE  113 (368)
T ss_pred             HHHHHHHHHHHhC----CCCCceEEEEcCCcHHHHHHHHHhcc-CCCCeEEEEeCCchHHHHHHHHHHcCCcEEEEECCC
Confidence            5667777777664    22223568899999999999999998 7899999988888765  477788999999999874


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccH
Q 009517          247 ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSF  326 (533)
Q Consensus       247 ~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~  326 (533)
                        ++.+|++++++++++.    +++++|++++|+||||...+   +++|.++|+++|+++|+|+++ .  ++. .+ .++
T Consensus       114 --~~~~d~~~l~~~l~~~----~~~~~v~~~~~~~~tG~~~~---~~~i~~l~~~~~~~livDa~~-~--~g~-~~-~~~  179 (368)
T PRK13479        114 --DEPPDAAEVEAALAAD----PRITHVALVHCETTTGILNP---LDEIAAVAKRHGKRLIVDAMS-S--FGA-IP-IDI  179 (368)
T ss_pred             --CCCCCHHHHHHHHHhC----CCCcEEEEEcccCccccccC---HHHHHHHHHHcCCEEEEEccc-c--cCC-cc-ccc
Confidence              3478999999998752    25678999999999999998   789999999999999999655 3  322 12 121


Q ss_pred             HHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh------------------ccccCCh
Q 009517          327 KKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS------------------VNLCSNI  388 (533)
Q Consensus       327 ~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~------------------~~~~~~~  388 (533)
                      .    .+   +.|   +++.|++|++.|++|  +||+++   ++++++.+.....                  ..++++.
T Consensus       180 ~----~~---~~d---~~v~s~~K~l~g~~G--~G~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~  244 (368)
T PRK13479        180 A----EL---GID---ALISSANKCIEGVPG--FGFVIA---RRSELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPT  244 (368)
T ss_pred             c----cc---Cce---EEEecCccccccCCC--ceEEEE---CHHHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcH
Confidence            1    11   223   667899998767777  599998   8888877654321                  1135555


Q ss_pred             HHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCC-----ceeEEecccCCCHHHHHH
Q 009517          389 SGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAE-----GAMYLFPRIQLPEKAIKA  463 (533)
Q Consensus       389 ~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-----gg~~~~~~~~~~~~~~~~  463 (533)
                      ..+.++.++++.       +.. ...+++..++++++++.+++.|+++ |+.+..+.     +...++  ++.+..    
T Consensus       245 ~~~~~l~~al~~-------l~~-~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~--~~~~~~----  309 (368)
T PRK13479        245 HVVAAFYQALLE-------LEE-EGGVPARGARYANNQRTLVAGMRAL-GFEPLLDAEIQSPIIVTFH--APADPA----  309 (368)
T ss_pred             HHHHHHHHHHHH-------HHH-hhCHHHHHHHHHHHHHHHHHHHHHc-CCcccCCchhcCceEEEEE--CCCCCC----
Confidence            555555555531       100 0124566678899999999999998 87765332     122233  221100    


Q ss_pred             HHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEe-c-CCcCcHHHHHHHHHHHHHHH
Q 009517          464 AEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTI-L-PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       464 ~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~-~-~~~e~i~~~~~~l~~~l~~~  527 (533)
                           . +...+. ..|.++||.+.+|..+.    .+++|++. + .+++++++++++|+++++++
T Consensus       310 -----~-~~~~l~-~~L~~~gi~v~~g~~~~----~~~iRis~~~~~t~edi~~~l~~L~~~l~~~  364 (368)
T PRK13479        310 -----Y-DFKEFY-ERLKEQGFVIYPGKLTQ----VDTFRIGCIGDVDAADIRRLVAAIAEALYWM  364 (368)
T ss_pred             -----c-CHHHHH-HHHHHCCEEEecCCCCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHHHc
Confidence                 1 123333 45667899999986542    23899986 5 78999999999999988764

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=99.94  E-value=3.9e-25  Score=226.59  Aligned_cols=314  Identities=13%  Similarity=0.133  Sum_probs=216.2

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc-CCCCeEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-SENDGIL  219 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~Vl  219 (533)
                      ++++++++.+++....     .+... -..++++++++.+...     ....+++++++++|+..+++.++. ..+++|+
T Consensus        46 ~p~v~~a~~~~~~~~~-----~~~~~-~~~~~~~~la~~l~~~-----~~~~~~~~~SGseA~~~Al~~ar~~~~~~~vv  114 (375)
T PRK04260         46 HPQVQQALQKQAGLIW-----HSPNL-YLNSLQEEVAQKLIGD-----KDYLAFFCNSGAEANEAAIKIARKATGKQEII  114 (375)
T ss_pred             CHHHHHHHHHHHHhcC-----cccCc-cCCHHHHHHHHHHhcC-----cCCEEEEcCccHHHHHHHHHHHHHhcCCCeEE
Confidence            4679999999887621     22222 2567888999887521     122468899999999999998742 2357899


Q ss_pred             EcCCcCcchHH-HHHHhCCeEE---------EEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCC-C
Q 009517          220 CPIPQYPLYSA-SIALHGGTLV---------PYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVL-A  288 (533)
Q Consensus       220 v~~p~~~~~~~-~~~~~g~~~~---------~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~-s  288 (533)
                      +.+..|++... .+...|....         .++...    ..|++.+++.+.+      ++++|++++++|++|++. +
T Consensus       115 ~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~dl~~l~~~l~~------~~a~vi~e~v~~~~G~~~~~  184 (375)
T PRK04260        115 TFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAI----FNDLNSVKALVNK------NTAAVMLELVQGESGVLPAD  184 (375)
T ss_pred             EECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEeC----CCCHHHHHHhcCC------CeEEEEECCeECCCCCcCCC
Confidence            99999997442 3322222111         111100    1378999988854      688899999999999864 5


Q ss_pred             HHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecC
Q 009517          289 EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGF  368 (533)
Q Consensus       289 ~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~  368 (533)
                      .+.+++|.++|+++|+++|+||+|.++.+.|.  ..+...  ..+   .||     +.||||++ + +|+|+||+++   
T Consensus       185 ~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~--~~~~~~--~~~---~pd-----i~t~sK~l-~-~G~~ig~~~~---  247 (375)
T PRK04260        185 KDFVKALADYCQETGILLIVDEVQTGMGRTGK--LYAFEH--YGI---EPD-----IFTLAKGL-A-NGVPVGAMLA---  247 (375)
T ss_pred             HHHHHHHHHHHHHcCCEEEEechhhCCCcccc--hhhhHh--hCC---CCC-----EEEecccc-c-CCcceEEEEE---
Confidence            67899999999999999999999998765442  111111  122   466     45899999 5 6999999998   


Q ss_pred             CHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCce
Q 009517          369 SAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGA  447 (533)
Q Consensus       369 ~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg  447 (533)
                      ++++++.+..... .+++++++.++++.++|+...        ..+.++++++..+..++.+.+.+.+.+.+..++. .|
T Consensus       248 ~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~g  318 (375)
T PRK04260        248 KSSLGGAFGYGSHGSTFGGNKLSMAAASATLDIML--------TAGFLEQALENGNYLQEQLQKALQDKETVTTVRG-LG  318 (375)
T ss_pred             cHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHH--------hhHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEec-cc
Confidence            8998887764333 668889999999999885321        1133455666666667777777766643444444 67


Q ss_pred             eEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHH
Q 009517          448 MYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDF  523 (533)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~  523 (533)
                      +++|+.+..              ....+. +.+.++||.+.|+       +.+.+||++.  +++++|++++++|+++
T Consensus       319 ~~~~~~~~~--------------~~~~~~-~~l~~~Gi~v~~~-------~~~~lR~~~~~~~t~~~i~~~l~~l~~~  374 (375)
T PRK04260        319 YMIGIETTA--------------DLSQLV-EAARDKGLIVLTA-------GTNVIRLLPPLTLTKEEIEQGIAILSEV  374 (375)
T ss_pred             eEEEEEecC--------------cHHHHH-HHHHhCCCEEecC-------CCCEEEEcCCCccCHHHHHHHHHHHHHh
Confidence            788866531              123333 4556789999874       2238999993  8899999999999875

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=99.94  E-value=1.8e-24  Score=223.76  Aligned_cols=368  Identities=13%  Similarity=0.102  Sum_probs=231.0

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      ++.++++...++.||++      +||+..|....                      ..+++    ++.+++++.+++.+.
T Consensus        25 ~~~~a~G~~l~D~dG~~------ylD~~~g~~~~----------------------~lGh~----~p~v~~ai~~ql~~~   72 (421)
T PRK09792         25 FAQSAENATLKDVEGNE------YIDFAAGIAVL----------------------NTGHR----HPDLVAAVEQQLQQF   72 (421)
T ss_pred             eEEeccccEEEeCCCCE------EEEccCchhhh----------------------cCCCC----CHHHHHHHHHHHHhc
Confidence            45677777777778887      78876554321                      11111    689999999998863


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCC-CeEEEcCCcCcchHHHHHH
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-DGILCPIPQYPLYSASIAL  234 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vlv~~p~~~~~~~~~~~  234 (533)
                      ..   ..+..  ...+....+|+.+.+..+. ...++++++++|++|++.+++..+...| .+|+....+|++.......
T Consensus        73 ~~---~~~~~--~~~~~~~~la~~l~~~~p~-~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s  146 (421)
T PRK09792         73 TH---TAYQI--VPYESYVTLAEKINALAPV-SGQAKTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMA  146 (421)
T ss_pred             cC---cccCc--cCCHHHHHHHHHHHHhCCC-CCCceEEEeCChHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHh
Confidence            21   11111  1223334455555443210 1236899999999999999998863344 6799999999997644433


Q ss_pred             h-CC-------------eEEEEecCCCCCCCC----CHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCC-CHHHHHHH
Q 009517          235 H-GG-------------TLVPYYLDEATGWGL----ETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVL-AEENQRAI  295 (533)
Q Consensus       235 ~-g~-------------~~~~v~~~~~~~~~l----d~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~-s~~~l~~i  295 (533)
                      . |.             .+..+|+.... -++    +++.+++.++... ...++++|+++..++|+|+.+ +++.+++|
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~v~~p~~~-~~~~~~~~~~~l~~~~~~~~-~~~~iaavi~EPvq~~~G~~~~~~~~l~~l  224 (421)
T PRK09792        147 LTGKVAPYKIGFGPFPGSVYHVPYPSDL-HGISTQDSLDAIERLFKSDI-EAKQVAAIIFEPVQGEGGFNVAPKELVAAI  224 (421)
T ss_pred             hcCCCcccccCCCCCCCCcEEcCCCccc-ccccHHHHHHHHHHHHHhcc-CCCceEEEEEccccCCCCCccCCHHHHHHH
Confidence            2 21             01222222111 012    2466777765310 112688888887799999865 89999999


Q ss_pred             HHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHH
Q 009517          296 VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQ  375 (533)
Q Consensus       296 ~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~  375 (533)
                      .++|++||+++|+||+|++|.+.|.  ...+..+     ++.+|     +.+|||++ + +|+|+||+++   ++++++.
T Consensus       225 ~~lc~~~g~llI~DEv~tg~gr~G~--~~a~~~~-----~~~pD-----i~t~gK~l-~-~G~pigav~~---~~~i~~~  287 (421)
T PRK09792        225 RRLCDEHGIVMIADEVQSGFARTGK--LFAMDHY-----ADKPD-----LMTMAKSL-A-GGMPLSGVVG---NANIMDA  287 (421)
T ss_pred             HHHHHHcCCEEEEeccccCCCCCCc--hhHHHhc-----CCCCc-----EEEeehhh-c-CCCceEEEEE---cHHHHhc
Confidence            9999999999999999999877653  2222221     11466     67999999 5 6999999998   9999887


Q ss_pred             HHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCceEecCCc-eeE
Q 009517          376 IYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNS----LEGITCNKAEG-AMY  449 (533)
Q Consensus       376 l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~g~~~~~~~g-g~~  449 (533)
                      +..... .++++++++++++.+.++-           .++ .+..++.++..+++.+.|++    .|.+  ..+.| |++
T Consensus       288 ~~~~~~~~T~~gnpl~~aaa~a~l~~-----------l~~-~~~~~~~~~~g~~l~~~l~~l~~~~p~v--~~vrG~Gl~  353 (421)
T PRK09792        288 PAPGGLGGTYAGNPLAVAAAHAVLNI-----------IDK-ESLCERANQLGQRLKNTLIDAKESVPAI--AAVRGLGSM  353 (421)
T ss_pred             cCCCCcCCCCCCCHHHHHHHHHHHHH-----------HHh-hhHHHHHHHHHHHHHHHHHHHHHhCCCc--ceecccceE
Confidence            754333 6788999999988777641           111 12233333334444444433    3433  34555 778


Q ss_pred             EecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHHH
Q 009517          450 LFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~  525 (533)
                      +|+.+..+...     .........++ ..+.++||++.+...     ..+.|||.+.  +++++|++++++|.++++
T Consensus       354 ~~ie~~~~~~~-----~~~~~~~~~l~-~~~~~~Gv~i~~~g~-----~~~~irl~P~l~i~~~ei~~~~~~l~~~l~  420 (421)
T PRK09792        354 IAAEFNDPQTG-----EPSAAIAQKIQ-QRALAQGLLLLTCGA-----YGNVIRFLYPLTIPDAQFDAAMKILQDALS  420 (421)
T ss_pred             EEEEecCCccC-----CcchHHHHHHH-HHHHHCCcEEeecCC-----CCCEEEEeCCCcCCHHHHHHHHHHHHHHHh
Confidence            88766422100     00000122333 444568999964211     1248999985  899999999999998875

>PLN02409 serine--glyoxylate aminotransaminase

Probab=99.94  E-value=3.8e-24  Score=220.75  Aligned_cols=309  Identities=13%  Similarity=0.064  Sum_probs=221.0

Q ss_pred             cccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcch--HHHHHHhCCeEEEEec
Q 009517          167 QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLY--SASIALHGGTLVPYYL  244 (533)
Q Consensus       167 ~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~--~~~~~~~g~~~~~v~~  244 (533)
                      .+..++++++++.+.+.+|.+ ..+.+++++++++++..++..++ ++||+|+++++.|.+.  ...++..|++++.++.
T Consensus        38 ~~~~~~~~~~~~~l~~~~g~~-~~~~vi~~~~gt~a~~~a~~~~~-~~Gd~Vlv~~~~~~~~~~~~~~~~~g~~v~~v~~  115 (401)
T PLN02409         38 PAFPALTKELLEDVKYIFKTK-SGTPFIFPTTGTGAWESALTNTL-SPGDKVVSFRIGQFSLLWIDQMQRLNFDVDVVES  115 (401)
T ss_pred             HHHHHHHHHHHHHHHHHhCCC-CCCEEEEeCCcHHHHHHHHHhcC-CCCCEEEEeCCCchhHHHHHHHHHcCCceEEEEC
Confidence            457889999999998888853 22467888899999999999887 8999999999988765  4667788999999998


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcc
Q 009517          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (533)
Q Consensus       245 ~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~  324 (533)
                      +.+  ..+|++++++++++..  .+++++|++++++||||.+++.+++.++++ |+++|+++|+|++++-    |..+ .
T Consensus       116 ~~~--~~~~~~~l~~~l~~~~--~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~-~~~~g~~~vvD~v~s~----g~~~-i  185 (401)
T PLN02409        116 PWG--QGADLDILKSKLRQDT--NHKIKAVCVVHNETSTGVTNDLAGVRKLLD-CAQHPALLLVDGVSSI----GALD-F  185 (401)
T ss_pred             CCC--CCCCHHHHHHHHhhCc--CCCccEEEEEeecccccccCCHHHHHHHHh-hhccCcEEEEEccccc----CCcc-c
Confidence            753  3579999999998510  016899999999999999999555544444 9999999999999873    2211 1


Q ss_pred             cHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh----------------c---ccc
Q 009517          325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS----------------V---NLC  385 (533)
Q Consensus       325 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~----------------~---~~~  385 (533)
                      ++    .++   .-|   +++.|.+|++.+.  .++||+++   ++++++.+.+...                .   .++
T Consensus       186 d~----~~~---~~D---~~~~s~~K~l~~P--~G~G~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~T  250 (401)
T PLN02409        186 RM----DEW---GVD---VALTGSQKALSLP--TGLGIVCA---SPKALEASKTAKSPRVFFDWADYLKFYKLGTYWPYT  250 (401)
T ss_pred             cc----ccc---Ccc---EEEEcCccccCcC--CCcceeEE---CHHHHHHHhcCCCCCeecCHHHHHHHHhcCCCCCCC
Confidence            11    111   122   6677779998543  36999988   8888887754210                0   234


Q ss_pred             CChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCC-c---eeEEecccCCCHHHH
Q 009517          386 SNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAE-G---AMYLFPRIQLPEKAI  461 (533)
Q Consensus       386 ~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-g---g~~~~~~~~~~~~~~  461 (533)
                      ++...+.++..+++.       +  ....++.++++++++++++++.|+++ |++++.+. .   +..+++  .+|.+  
T Consensus       251 p~~~~~~al~~al~~-------~--~~~G~e~i~~~~~~l~~~l~~~L~~~-g~~~~~~~~~~~s~~v~~~--~~p~~--  316 (401)
T PLN02409        251 PSIQLLYGLRAALDL-------I--FEEGLENVIARHARLGEATRLAVEAW-GLKLCTKKPEWRSDTVTAV--VVPEG--  316 (401)
T ss_pred             ccHHHHHHHHHHHHH-------H--HHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCChhhcccceEEE--eCCCC--
Confidence            566666666666631       0  01236778888999999999999988 88876542 1   122333  33321  


Q ss_pred             HHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 009517          462 KAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       462 ~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~~  527 (533)
                             + +...+...+++++||.+.+|..-   .....|||+..  .+.+++..++++|++++.++
T Consensus       317 -------~-~~~~l~~~l~~~~~i~i~~G~~~---~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~~  373 (401)
T PLN02409        317 -------I-DSAEIVKNAWKKYNLSLGLGLNK---VAGKVFRIGHLGNVNELQLLGALAGVEMVLKDV  373 (401)
T ss_pred             -------C-CHHHHHHHHHHhCCEEEEcCCCc---ccCCEEEEcCCCCCCHHHHHHHHHHHHHHHHHc
Confidence                   1 23445567778899999988652   12238999995  78889999999999988764

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=99.94  E-value=9.2e-25  Score=224.46  Aligned_cols=359  Identities=13%  Similarity=0.101  Sum_probs=236.2

Q ss_pred             chHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhc
Q 009517           75 EIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQ  154 (533)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~  154 (533)
                      .++.++++...++.||++      ++|+..|....                      ..+++    ++++++++.+++.+
T Consensus        24 ~~~~~a~G~~l~D~dG~~------ylD~~~g~~~~----------------------~lGh~----~p~v~~ai~~q~~~   71 (408)
T PRK04612         24 VVLERGQGSRVWDDQGRE------YLDLAAGIAVC----------------------GLGHN----DPDLVAALTEQAGK   71 (408)
T ss_pred             ceEEEeeeCEEEECCCCE------EEEcCccHhhc----------------------cCCCC----CHHHHHHHHHHHHh
Confidence            356677888777788888      88886664221                      11222    68999999999986


Q ss_pred             CCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC-------CC-CeEEEcCCcCc
Q 009517          155 IPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS-------EN-DGILCPIPQYP  226 (533)
Q Consensus       155 ~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~-------~g-d~Vlv~~p~~~  226 (533)
                      ...     +.... ..+....+++.+.+..+   ..+.++++++|++|++.+++..+..       ++ .+|+....+|+
T Consensus        72 ~~~-----~~~~~-~~~~~~~la~~L~~~~~---~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yH  142 (408)
T PRK04612         72 LWH-----TSNVF-YSAPPLKLAEELVTASR---FAEKVFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFH  142 (408)
T ss_pred             ccc-----ccccc-CCHHHHHHHHHHHhhCC---CCCEEEEcCchHHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcC
Confidence            321     12111 23334456666654322   1378999999999999999987621       12 46999999999


Q ss_pred             chHHHHHHh-CCeEEE---EecCCC---CCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCC--HHHHHHHHH
Q 009517          227 LYSASIALH-GGTLVP---YYLDEA---TGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLA--EENQRAIVD  297 (533)
Q Consensus       227 ~~~~~~~~~-g~~~~~---v~~~~~---~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s--~~~l~~i~~  297 (533)
                      +........ |.....   -+....   -. -.|++.+++.+..      +..+.++..|.+++|-+++  ++.+++|.+
T Consensus       143 G~t~~~~s~~~~~~~~~~~~~~~~~~~~~~-~~d~~~l~~~~~~------~~~aavi~eP~~~~gg~~~~~~~~l~~l~~  215 (408)
T PRK04612        143 GRTLAAVTATAQPKYQEGYEPLPGGFRYVD-FNDVEALEAAMAG------GDVAAVMLEPIQGEGGVMPAAPGFLARVRA  215 (408)
T ss_pred             CccHHHHHhcCCcccccCCCCCCCCceEcC-CCCHHHHHHhhCC------CCEEEEEECCccCCCCCcCCCHHHHHHHHH
Confidence            976544433 211111   011100   01 1278888888853      3445566677666765544  678999999


Q ss_pred             HHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHH
Q 009517          298 FCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY  377 (533)
Q Consensus       298 l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~  377 (533)
                      +|++||+++|+||+|++|.+.|.  ...  ....+.   .+|     +.+|||.+ | +|+|+||+++   ++++++.+.
T Consensus       216 l~~~~g~llI~DEv~tg~gr~G~--~~a--~~~~~~---~pd-----i~t~~K~l-~-~G~piga~~~---~~~~~~~~~  278 (408)
T PRK04612        216 LCDQHDALLVLDEIQCGMGRTGT--LFA--HWQEQV---TPD-----IVTLAKAL-G-GGFPIGAMLA---GPKVAETMQ  278 (408)
T ss_pred             HHHHcCCEEEEeccccCCCcCCc--hhh--hhhcCC---CCC-----EEEEcchh-c-CCCceEEEEE---CHHHHhhhc
Confidence            99999999999999999777552  111  111111   344     78999999 5 6999999998   888887776


Q ss_pred             Hhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCceEecCCceeEEec
Q 009517          378 KVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL----EGITCNKAEGAMYLFP  452 (533)
Q Consensus       378 ~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~gg~~~~~  452 (533)
                      .... .++++++++++++.++|+           ..++ +.+.++.+++.+++.+.|+++    +-+..+++.|.|+.+.
T Consensus       279 ~~~~~~t~~~~p~~~aaa~a~L~-----------~~~~-~~l~~~~~~~g~~l~~~l~~l~~~~~~i~~vrg~Gl~~~i~  346 (408)
T PRK04612        279 FGAHGTTFGGNPLAAAVARVALR-----------KLAS-PQIAANVARQSAALRAGLEALNAEFGVFAQVRGRGLMLGAV  346 (408)
T ss_pred             CCCcCCCCCCCHHHHHHHHHHHH-----------HHHh-ccHHHHHHHHHHHHHHHHHHHHhhCCCeeeeeccceEEEEE
Confidence            5433 678899999999998884           2222 356666777777777777664    3355677888665542


Q ss_pred             ccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHHHHHHH
Q 009517          453 RIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~~~~  529 (533)
                       +..+..          ..... +.+.+.++||++.|.       +.+.+|+.+.  +++++|++++++|+++++++.+
T Consensus       347 -~~~~~~----------~~a~~-i~~~l~~~Gvlv~~~-------g~~~lRl~Ppl~it~eeid~~l~~l~~~l~~~~~  406 (408)
T PRK04612        347 -LAPAHA----------GQAGA-ILDLAAEHGLLLLQA-------GPDVLRFVPALNLTDAELADGLARLRLALADYVA  406 (408)
T ss_pred             -ecCchh----------hHHHH-HHHHHHHCCeEEeeC-------CCCEEEEcCCccCCHHHHHHHHHHHHHHHHHHhh
Confidence             211100          01223 335567799999862       2248999984  8999999999999999987654

>PLN02242 methionine gamma-lyase

Probab=99.94  E-value=3e-24  Score=220.91  Aligned_cols=216  Identities=17%  Similarity=0.179  Sum_probs=168.8

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHH-----HHhCCeEEEEe
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI-----ALHGGTLVPYY  243 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~-----~~~g~~~~~v~  243 (533)
                      ..+|++.+|++.+        .+.+++++|+++|+..++.+++ ++||+|+++.|.|..+...+     +..|++++.++
T Consensus        78 ~~~LE~~lA~l~g--------~~~~l~~~sG~~Ai~~al~al~-~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~~d  148 (418)
T PLN02242         78 VLNLGRQMAALEG--------TEAAYCTASGMSAISSVLLQLC-SSGGHVVASNTLYGGTHALLAHFLPRKCNITTTFVD  148 (418)
T ss_pred             HHHHHHHHHHHhC--------CCeEEEEccHHHHHHHHHHHHh-CCCCEEEEcCCcHHHHHHHHHHhhhhccCceEEEcC
Confidence            7788899998864        4567899999999999999998 89999999999998887655     34677776665


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCc
Q 009517          244 LDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKF  323 (533)
Q Consensus       244 ~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~  323 (533)
                      .       .|++.+++++++.     ++++|++++|+||||.+++   +++|+++|+++|++||+|++|..+.+...   
T Consensus       149 ~-------~d~e~l~~~i~~~-----~tklV~lesp~NPtG~v~d---l~~I~~la~~~gi~livDea~~~~~~~~~---  210 (418)
T PLN02242        149 I-------TDLEAVKKAVVPG-----KTKVLYFESISNPTLTVAD---IPELARIAHEKGVTVVVDNTFAPMVLSPA---  210 (418)
T ss_pred             C-------CCHHHHHHhcCcC-----CCEEEEEecCCCCCCcccC---HHHHHHHHHHhCCEEEEECCCCccCCCHH---
Confidence            3       2799999998651     4899999999999999987   89999999999999999999987554210   


Q ss_pred             ccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCe-eEEEEEecCCHHHHHHHHHhhh---ccccCChHHHHHHHHHcC
Q 009517          324 HSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKR-GGYMEVTGFSAEVREQIYKVAS---VNLCSNISGQILASLVMS  399 (533)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~r-iG~v~~~~~~~~~~~~l~~~~~---~~~~~~~~~q~a~~~~L~  399 (533)
                          .    +   .   ..|++.||||.+ +++|++ .||+++   ++++++.+.....   ...+++...|.++..++.
T Consensus       211 ----~----~---g---~divv~S~SK~l-~g~g~~~gG~iv~---~~~li~~l~~~~~~~~~~~g~~~~~~~A~l~~~~  272 (418)
T PLN02242        211 ----R----L---G---ADVVVHSISKFI-SGGADIIAGAVCG---PAELVNSMMDLHHGALMLLGPTMNPKVAFELSER  272 (418)
T ss_pred             ----H----c---C---CcEEEEeCcccc-CCCCCceEEEEEc---CHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHcC
Confidence                1    1   1   238899999999 668887 588887   8899888876643   235556667777766654


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEe
Q 009517          400 PPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCN  442 (533)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~  442 (533)
                      ..            .+..+.++++++++.+.+.|++. ++++.
T Consensus       273 l~------------tl~~r~~~~~~~a~~la~~L~~~-~~~V~  302 (418)
T PLN02242        273 LP------------HLSLRMKEHCRRAMEYAKRMKEL-GLKVI  302 (418)
T ss_pred             CC------------cHHHHHHHHHHHHHHHHHHHHhC-CCEEE
Confidence            21            23445668889999999999988 55554

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=99.94  E-value=1.6e-24  Score=222.29  Aligned_cols=316  Identities=16%  Similarity=0.155  Sum_probs=216.7

Q ss_pred             CHHHHHHHHHHHhcCCCCC---ccccC--CCcccHHHHHHHHHHHHhhcCCCCC-CCCEEEcCChHHHHHHHHHHhccC-
Q 009517          141 SADSIERAWQILDQIPGRA---TGAYS--HSQGIKGLRDTIAAGIEARDGFPAD-PNDIFLTDGASPAVHMMMQLLIRS-  213 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~---~~~Y~--~~~G~~~lr~aia~~~~~~~g~~~~-~~~i~~t~G~~~al~~~~~~l~~~-  213 (533)
                      |+.+++++.+.+.......   ...+.  ...+..++|+.++++++      .+ +++|++|+|+++++..++.++. . 
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------~~~~~~v~~~~g~t~a~~~~~~~l~-~~   84 (373)
T cd06453          12 PQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFIN------APSPDEIIFTRNTTEAINLVAYGLG-RA   84 (373)
T ss_pred             CHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhC------CCCCCeEEEeCCHHHHHHHHHHHhh-hc
Confidence            7888988888775422100   00111  12335677888888874      34 6789999999999999999987 5 


Q ss_pred             --CCCeEEEcCCcCcch----HHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCC
Q 009517          214 --ENDGILCPIPQYPLY----SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVL  287 (533)
Q Consensus       214 --~gd~Vlv~~p~~~~~----~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~  287 (533)
                        +||+|++++++|+..    ....+..|++++.++++.  ++.+|++++++.+.+      ++++|++++|+||||.+.
T Consensus        85 ~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~------~~~~v~~~~~~~~tG~~~  156 (373)
T cd06453          85 NKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDD--DGQLDLEALEKLLTE------RTKLVAVTHVSNVLGTIN  156 (373)
T ss_pred             CCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecCC--CCCcCHHHHHHHhcC------CceEEEEeCcccccCCcC
Confidence              899999999999874    334456799999999873  457999999999976      789999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEec
Q 009517          288 AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTG  367 (533)
Q Consensus       288 s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~  367 (533)
                      +   +++|+++|+++|+++|+|++|.....    + .++    .++   ..|   +++.|++|.+ ++  .++||+++  
T Consensus       157 ~---~~~i~~~~~~~~~~li~D~a~~~~~~----~-~~~----~~~---~~d---~~~~s~~K~~-~~--~g~g~~~~--  213 (373)
T cd06453         157 P---VKEIGEIAHEAGVPVLVDGAQSAGHM----P-VDV----QDL---GCD---FLAFSGHKML-GP--TGIGVLYG--  213 (373)
T ss_pred             C---HHHHHHHHHHcCCEEEEEhhhhcCce----e-eec----ccc---CCC---EEEecccccc-CC--CCcEEEEE--
Confidence            8   78999999999999999999864221    1 111    111   233   5667888998 53  56899988  


Q ss_pred             CCHHHHHHHHHhhhc----------------------cccCChHHHHHHHHHcCCCCCCChhHHHHH-HHHHHHHHHHHH
Q 009517          368 FSAEVREQIYKVASV----------------------NLCSNISGQILASLVMSPPKVGDESYESYC-AERDGILSSLAR  424 (533)
Q Consensus       368 ~~~~~~~~l~~~~~~----------------------~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~-~~~~~~~~~~~~  424 (533)
                       ++++++.+......                      ..+++.....++..+++.          .. ...+.++++.++
T Consensus       214 -~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~----------l~~~g~~~~~~~~~~  282 (373)
T cd06453         214 -KEELLEEMPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDY----------LEKIGMEAIAAHEHE  282 (373)
T ss_pred             -chHHhhcCCCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHH----------HHHcCHHHHHHHHHH
Confidence             88887776543210                      012344444444444421          11 124567777788


Q ss_pred             HHHHHHHHHhcCCCceEecC---CceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCC-----
Q 009517          425 RAKTLEDAFNSLEGITCNKA---EGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQV-----  496 (533)
Q Consensus       425 ~~~~l~~~L~~~~g~~~~~~---~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~-----  496 (533)
                      .++++.+.|+++++++++.+   .++++ ++.++  .          . +..++ .+.|+++||.+.+|..+...     
T Consensus       283 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~--~----------~-~~~~i-~~~l~~~gi~i~~g~~~~~~~~~~~  347 (373)
T cd06453         283 LTAYALERLSEIPGVRVYGDAEDRAGVV-SFNLE--G----------I-HPHDV-ATILDQYGIAVRAGHHCAQPLMRRL  347 (373)
T ss_pred             HHHHHHHHHhcCCCeEEeCCccccCCeE-EEEEC--C----------c-CHHHH-HHHHHHCCEEeccCccchhHHHHHh
Confidence            88999999999888887643   34443 33332  1          1 12333 34566789999988754211     


Q ss_pred             CCCceEEEEec--CCcCcHHHHHHHH
Q 009517          497 PGTWHFRCTIL--PQEDKIPAIVTRL  520 (533)
Q Consensus       497 ~g~~~iRis~~--~~~e~i~~~~~~l  520 (533)
                      ...++||+|+.  .++++++++++.|
T Consensus       348 ~~~~~iRis~~~~~t~~di~~~~~~l  373 (373)
T cd06453         348 GVPGTVRASFGLYNTEEEIDALVEAL  373 (373)
T ss_pred             CCCCeEEEEecCCCCHHHHHHHHhhC
Confidence            11348999997  6889999888764

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=99.94  E-value=3.6e-24  Score=220.09  Aligned_cols=323  Identities=16%  Similarity=0.185  Sum_probs=217.4

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccC--C--CcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc--CC
Q 009517          141 SADSIERAWQILDQIPGRATGAYS--H--SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR--SE  214 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~--~--~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--~~  214 (533)
                      |+.+++++.+.+....+.....+.  +  ..-+.++|+.+++++    |  .++++|++|+|+++++..++..+..  .+
T Consensus        12 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----g--~~~~~i~~t~~~t~a~~~al~~~~~~~~~   85 (379)
T TIGR03402        12 DPEVLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLL----G--AEPDEIIFTSGGTESDNTAIKSALAAQPE   85 (379)
T ss_pred             CHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHh----C--CCCCeEEEeCcHHHHHHHHHHHHHHhcCC
Confidence            788999988877642110000110  0  111345666666665    4  5578999999999999999987631  34


Q ss_pred             CCeEEEcCCcCcchHHHH---HHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHH
Q 009517          215 NDGILCPIPQYPLYSASI---ALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEEN  291 (533)
Q Consensus       215 gd~Vlv~~p~~~~~~~~~---~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~  291 (533)
                      |++|++....|+.+...+   ...|.+++.++.+.  ++.+|++++++.+++      +++++++++++||||.+++   
T Consensus        86 ~~~vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~g~~~~~~l~~~i~~------~~~lv~i~~~~n~tG~~~~---  154 (379)
T TIGR03402        86 KRHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDE--EGRLDLEELRAAITD------DTALVSVMWANNETGTIFP---  154 (379)
T ss_pred             CCeEEEcccccHHHHHHHHHHHHcCCEEEEEccCC--CCcCCHHHHHHhcCC------CcEEEEEEcccCCeeeccc---
Confidence            688999888887765433   34699999998864  346899999999976      7899999999999999999   


Q ss_pred             HHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHH
Q 009517          292 QRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAE  371 (533)
Q Consensus       292 l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~  371 (533)
                      +++|.++|+++|+++|+|+++..    |..+ .++.    ++   ..|   +++.|.+|.+ |++|  +|++.+   .++
T Consensus       155 ~~~I~~l~~~~g~~vivD~~~~~----g~~~-~~~~----~~---~~D---~~~~s~~K~~-gp~G--~g~l~v---~~~  213 (379)
T TIGR03402       155 IEEIGEIAKERGALFHTDAVQAV----GKIP-IDLK----EM---NID---MLSLSGHKLH-GPKG--VGALYI---RKG  213 (379)
T ss_pred             HHHHHHHHHHcCCEEEEECcccc----cccc-cCcc----cC---CCC---EEEEcHHHcC-CCCc--eEEEEE---CCC
Confidence            67899999999999999999974    3211 1111    11   233   6677888954 7666  666665   333


Q ss_pred             HHHHHHHhh--------hccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCceEe
Q 009517          372 VREQIYKVA--------SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNS-LEGITCN  442 (533)
Q Consensus       372 ~~~~l~~~~--------~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~  442 (533)
                      ..  +.+..        ....+++..+..++.++++          ...++++.+.+++++.++++++.|.+ ++++.+.
T Consensus       214 ~~--~~p~~~g~~~~~~~~~gt~~~~~~~~l~~al~----------~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~  281 (379)
T TIGR03402       214 TR--FRPLLRGGHQERGRRAGTENVPGIVGLGKAAE----------LATEHLEEENTRVRALRDRLEAGLLARIPDARLN  281 (379)
T ss_pred             CC--CCCcccCCccCCCcCCCCccHHHHHHHHHHHH----------HHHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEe
Confidence            21  11110        1223455555555555543          12344566677888889999999985 7888776


Q ss_pred             cCC-----ceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCC----------------CCce
Q 009517          443 KAE-----GAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVP----------------GTWH  501 (533)
Q Consensus       443 ~~~-----gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~----------------g~~~  501 (533)
                      .+.     +.+.+|+  +.+             +...+ ...|.++||.+.+|..|....                ..+.
T Consensus       282 ~~~~~~~~~~~~~~~--~~~-------------~~~~~-~~~l~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~  345 (379)
T TIGR03402       282 GDPTKRLPNTVNISF--EYI-------------EGEAI-LLLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGS  345 (379)
T ss_pred             CCCccCCCCEEEEEe--cCC-------------CHHHH-HHhhccCCEEEEchhhcCCCCCCcCHHHHHcCCChhhcCce
Confidence            542     2344442  211             12333 356678999999998774321                1248


Q ss_pred             EEEEec--CCcCcHHHHHHHHHHHHHHHHH
Q 009517          502 FRCTIL--PQEDKIPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       502 iRis~~--~~~e~i~~~~~~l~~~l~~~~~  529 (533)
                      ||+|+.  ++++||+++++.|+++++++.+
T Consensus       346 vR~S~~~~~t~~di~~~~~~l~~~~~~~~~  375 (379)
T TIGR03402       346 IRFSLSRYNTEEDIDYVLEVLPPIIARLRA  375 (379)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            999996  8999999999999999887653

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=99.94  E-value=2.6e-24  Score=216.66  Aligned_cols=375  Identities=14%  Similarity=0.072  Sum_probs=252.7

Q ss_pred             chHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhc
Q 009517           75 EIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQ  154 (533)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~  154 (533)
                      ..+.++.+...++.||+.      +|||..|.-..                      ++++|    +|.|++++.+++..
T Consensus        40 ~~~~ra~G~~l~DvdG~~------ylDf~sgi~v~----------------------~~GH~----hP~Vv~Av~~q~~~   87 (447)
T COG0160          40 LVIVRAEGAYLYDVDGNE------YLDFLSGIAVL----------------------NLGHN----HPRVVEAVKRQLAK   87 (447)
T ss_pred             ceEEecccCEEEeCCCCE------EEEcccCcchh----------------------ccCCC----CHHHHHHHHHHHHH
Confidence            367788888888888888      66666543221                      22222    68999999999987


Q ss_pred             CCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCC-CeEEEcCCcCcchHHHHH
Q 009517          155 IPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-DGILCPIPQYPLYSASIA  233 (533)
Q Consensus       155 ~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vlv~~p~~~~~~~~~~  233 (533)
                      ... ....|...    +-..++|+.+.+.... ...+.++++++|++|++.+++......| ..|+...-.|++......
T Consensus        88 ~~h-~~~~~~~~----e~~v~~ae~L~~~~p~-~~~~~~~f~~sGaeA~E~AiKiAr~~Tgr~~viaf~~afHG~T~gal  161 (447)
T COG0160          88 LNH-THTRDLYY----EPYVELAEKLTALAPG-SGLKKVFFGNSGAEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGAL  161 (447)
T ss_pred             hhc-ccCCcccc----hhHHHHHHHHHHhCCc-ccCCeEEecCCcHHHHHHHHHHHHHHhCCCcEEEECCcccccchhhH
Confidence            532 12223332    3444455555443221 1457899999999999999999864344 789999999998665443


Q ss_pred             Hh-C-------------CeEEEEecCCC--CCCCC--------CHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCcc-CCC
Q 009517          234 LH-G-------------GTLVPYYLDEA--TGWGL--------ETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ-VLA  288 (533)
Q Consensus       234 ~~-g-------------~~~~~v~~~~~--~~~~l--------d~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~-~~s  288 (533)
                      .+ |             ..++.+|+...  +.|+.        ..+.++..+........++.+||+...+...|. ++|
T Consensus       162 slT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p  241 (447)
T COG0160         162 SLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPP  241 (447)
T ss_pred             HhccCccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCC
Confidence            32 1             12444444321  12222        234455555554444457889999988988887 667


Q ss_pred             HHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecC
Q 009517          289 EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGF  368 (533)
Q Consensus       289 ~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~  368 (533)
                      ++.++++.++|++||+++|+||+++++..+|.  ++++..     .++.||     +.++||.++  .|+++|.++.   
T Consensus       242 ~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~--~fa~E~-----~gv~PD-----ivt~aK~ig--~G~Pl~avv~---  304 (447)
T COG0160         242 KGFLKALRKLCREHGILLIADEVQTGFGRTGK--MFAFEH-----FGVEPD-----IVTLAKSLG--GGLPLSAVVG---  304 (447)
T ss_pred             HHHHHHHHHHHHHcCCEEEEeccccCCCcccc--chhhhh-----cCCCCC-----EEEeccccc--CCCceeEEec---
Confidence            77799999999999999999999999888874  454433     333688     678999994  4999999998   


Q ss_pred             CHHHHHHHHHhhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCceEecC
Q 009517          369 SAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL----EGITCNKA  444 (533)
Q Consensus       369 ~~~~~~~l~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~  444 (533)
                      .+++++........|+++|+++++++.+.|+.          + + .+.+.++..+..++|++.|.++    |-+.-++.
T Consensus       305 r~ei~~~~~g~~~~Tf~GNpva~Aaa~AvL~v----------i-e-~e~L~~~a~~~G~~l~~~L~~l~~~~~~IgdVRG  372 (447)
T COG0160         305 RAEIMDWPPGGHGGTFGGNPVACAAALAVLDV----------I-E-EENLLERAAELGEYLRDRLEELQEKHPLIGDVRG  372 (447)
T ss_pred             cHHhcccCCcccCCCCCcCHHHHHHHHHHHHH----------H-H-HccHHHHHHHHHHHHHHHHHHHHhhcCceecccc
Confidence            89998833333447799999999999999841          1 1 2367777788888888888765    54666777


Q ss_pred             CceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHH
Q 009517          445 EGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTD  522 (533)
Q Consensus       445 ~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~  522 (533)
                      .|.|.. +.+..+.+.     +.........+...+.++|+.+..+..+++     .|||.+-  ++++++++++++|++
T Consensus       373 ~Glm~g-iE~v~d~~t-----~~p~~~~~~~i~~~~~~~Glil~~~G~~~n-----viRi~PPL~is~e~~d~~l~il~~  441 (447)
T COG0160         373 LGLMIG-VELVKDRDT-----KEPDAELAAKIVARAFERGLLLLTCGPHGN-----VLRILPPLTISDEELDEGLDILEE  441 (447)
T ss_pred             cceEEE-EEEecCCCC-----CCCCHHHHHHHHHHHHHcCCEEeccCCCCc-----EEEEeCCcccCHHHHHHHHHHHHH
Confidence            776543 333321100     000001122233445678999987554443     8999994  899999999999999


Q ss_pred             HHHHH
Q 009517          523 FHKNF  527 (533)
Q Consensus       523 ~l~~~  527 (533)
                      ++++.
T Consensus       442 al~~~  446 (447)
T COG0160         442 ALKEA  446 (447)
T ss_pred             HHHhh
Confidence            98864

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=99.94  E-value=3.2e-24  Score=222.63  Aligned_cols=372  Identities=13%  Similarity=0.068  Sum_probs=235.7

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      ++.++++...++.||++      ++|+..|....                      ..+++    ++.+++++.+++.+.
T Consensus        26 ~~~~a~G~~l~D~dG~~------ylD~~~g~~~~----------------------~lGh~----~p~v~~Ai~~ql~~~   73 (443)
T PRK08360         26 VPVKAENAKVWDIEGNE------YIDFLSDAAVQ----------------------NVGHN----NPRVVKAIKEQTDKL   73 (443)
T ss_pred             eEEecceeEEEECCCCE------EEEccccHhhc----------------------ccCCC----CHHHHHHHHHHHHhc
Confidence            45667777777777777      78886664322                      11222    689999999999863


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCC-CeEEEcCCcCcchHHHHHH
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-DGILCPIPQYPLYSASIAL  234 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vlv~~p~~~~~~~~~~~  234 (533)
                      .     .+.......+.+..+|+.+.+..+  ...+.|+++++|+||++.+++..+...| .+|+....+|++....+..
T Consensus        74 ~-----~~~~~~~~~~~~~~la~~L~~~~p--~~~~~v~f~~sGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s  146 (443)
T PRK08360         74 I-----HYTPIYGFPVEPLLLAEKLIEIAP--GDNPKVSFGLSGSDANDGAIKFARAYTKRRKILSYLRSYYGSTYGAMS  146 (443)
T ss_pred             c-----CccccccCcHHHHHHHHHHHHhCC--CCCCEEEEcCCHHHHHHHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHH
Confidence            2     122211123444556666654432  2236899999999999999998863344 6788888899986533222


Q ss_pred             -hCC------------eEEEEecCCCC--CCC--------CCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCC-HH
Q 009517          235 -HGG------------TLVPYYLDEAT--GWG--------LETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLA-EE  290 (533)
Q Consensus       235 -~g~------------~~~~v~~~~~~--~~~--------ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s-~~  290 (533)
                       .|.            .+..+|+....  .+.        -+++.+++.++.. ..+.++++|+++..+||||.+++ ++
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~iAAvi~eP~~~~~G~~~~~~~  225 (443)
T PRK08360        147 LTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEGE-VYAEGVAALFAEPIQGDAGMIVPPED  225 (443)
T ss_pred             hcCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHHHHHHHHHHHHhc-cCCCCeEEEEECCccCCCCCcCCCHH
Confidence             221            12223222110  011        1234455656431 11237889988866899998776 66


Q ss_pred             HHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCH
Q 009517          291 NQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSA  370 (533)
Q Consensus       291 ~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~  370 (533)
                      .+++|.++|++||+++|+||+|++|.+.|.  +.+...  .++   .+|     +.+|||++ | +|+|+||+++   ++
T Consensus       226 ~l~~l~~l~~~~g~llI~DEv~~g~gr~G~--~~a~~~--~~~---~pD-----iitlsK~l-~-~G~pigav~~---~~  288 (443)
T PRK08360        226 YFKKLKKILDEHGILLVVDEVQSGLGRTGK--WFAIEH--FGV---EPD-----IITLGKPL-G-GGLPISATIG---RA  288 (443)
T ss_pred             HHHHHHHHHHHcCCEEEEeccccCCCcCcc--chhhhh--cCC---CCC-----EEEecccc-c-CCceeEEEEE---cH
Confidence            799999999999999999999999877653  222111  122   566     34789999 5 7999999998   89


Q ss_pred             HHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCceEecCC
Q 009517          371 EVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL----EGITCNKAE  445 (533)
Q Consensus       371 ~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~  445 (533)
                      ++++.+..... .+++.+++.++++.++|+.           .+. +.+.++.+++.+++++.|+++    +.+..+++.
T Consensus       289 ~i~~~~~~~~~~~T~~~~p~~~aaa~a~l~~-----------l~~-~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrg~  356 (443)
T PRK08360        289 EIMDSLPPLAHAFTLSGNPVASAAALAVIEE-----------IEE-KNLLKRAEKLGNYTKKRLEEMKKKHELIGDVRGI  356 (443)
T ss_pred             HHHhhhcCCCCCCCCCcCHHHHHHHHHHHHH-----------HHH-cCHHHHHHHHHHHHHHHHHHHHHhCCCeeeeecc
Confidence            99988865533 6788899999999888742           111 234555666666666666543    445567777


Q ss_pred             ceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHH
Q 009517          446 GAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDF  523 (533)
Q Consensus       446 gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~  523 (533)
                      |.|+.+ .+..+...    ..........+. ..+.++||++.+.       +.+.+||++.  +++++|++++++|+++
T Consensus       357 Gl~~gi-e~~~~~~~----~~~~~~~~~~~~-~~l~~~Gi~~~~~-------~~~~lr~~P~l~~t~~~id~~~~~l~~~  423 (443)
T PRK08360        357 GLMIGV-DLVKDRET----KERAYEEAAKVV-WRAWELGLIVTFF-------SGNVLRIQPPLTIEKEVLDEGLDILEEA  423 (443)
T ss_pred             ceEEEE-EEecCCcc----cCccHHHHHHHH-HHHHHCCeEEeec-------CCCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            766543 22111000    000000012333 4456789998752       1237999774  8999999999999999


Q ss_pred             HHHHHH
Q 009517          524 HKNFMD  529 (533)
Q Consensus       524 l~~~~~  529 (533)
                      ++.+.+
T Consensus       424 l~~~~~  429 (443)
T PRK08360        424 IEDVEE  429 (443)
T ss_pred             HHHHHh
Confidence            987643

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=99.93  E-value=4.1e-24  Score=224.22  Aligned_cols=293  Identities=17%  Similarity=0.213  Sum_probs=200.1

Q ss_pred             HHHHHHH---HHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHH----hCCeEEEEe
Q 009517          171 GLRDTIA---AGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL----HGGTLVPYY  243 (533)
Q Consensus       171 ~lr~aia---~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~----~g~~~~~v~  243 (533)
                      .++++++   +++.+.+|  .+.+++++|+|+++++..++.++...+||+|+++++.|+.+...+..    .|++++.++
T Consensus       109 g~~~~~~e~~~~la~l~g--~~~~~v~~~~g~t~~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~  186 (447)
T PRK00451        109 GTLQAIFEYQTMICELTG--MDVANASMYDGATALAEAALMAVRITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVP  186 (447)
T ss_pred             HHHHHHHHHHHHHHHHhC--CCcceEEecCcHHHHHHHHHHHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEec
Confidence            3555555   44466677  45668999999999999888876425899999999999998877665    699999999


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEE--ccccccccccCCC
Q 009517          244 LDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLA--DEVYQENVYVPEK  321 (533)
Q Consensus       244 ~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~--De~y~~~~~~~~~  321 (533)
                      +++  + .+|++++++++++      ++++|++++| ||||.+.+   +++|+++|+++|+++|+  |.+..++...   
T Consensus       187 ~~~--~-~~d~~~l~~~i~~------~t~~v~l~~p-n~tG~v~~---l~~I~~~a~~~~~~~iv~~d~~~~g~~~~---  250 (447)
T PRK00451        187 YED--G-VTDLEALEAAVDD------DTAAVVVQYP-NFFGVIED---LEEIAEIAHAGGALFIVGVDPVSLGLLKP---  250 (447)
T ss_pred             CCC--C-CCCHHHHHHhcCC------CeEEEEEECC-CCCCeeCC---HHHHHHHHHHCCCEEEEEcChHHhccCCC---
Confidence            875  3 7899999999976      7999999999 89999977   99999999999999988  5443221100   


Q ss_pred             CcccHHHHHhhcCCCCCCceEEEEe---cCCccCCCCCCCeeEEEEEecCCHHHHHHHH---------------------
Q 009517          322 KFHSFKKVSRSMGYGEKDISLVSFQ---SVSKGYYGECGKRGGYMEVTGFSAEVREQIY---------------------  377 (533)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~vi~i~---S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~---------------------  377 (533)
                      +        .++   ..|   +++.   +|||.+ .++|+++||+.+   ++++++.+.                     
T Consensus       251 ~--------~~~---~~D---~~~~s~~k~~~~~-~~~Gpg~G~l~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  312 (447)
T PRK00451        251 P--------GEY---GAD---IVVGEGQPLGIPL-SFGGPYLGFFAT---RKKLVRQMPGRLVGETVDADGKRGFVLTLQ  312 (447)
T ss_pred             c--------ccC---CCC---EEEECCCcCCCCC-CCCCCCchHHHh---hHHHHhhCCCCEeeeecccCCCeeeEeecc
Confidence            0        011   233   3333   788887 678999999987   788877641                     


Q ss_pred             -------Hhhh-ccccCChHHH-HHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCcee
Q 009517          378 -------KVAS-VNLCSNISGQ-ILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAM  448 (533)
Q Consensus       378 -------~~~~-~~~~~~~~~q-~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~  448 (533)
                             .... ...+.+...+ .++...+...         -.+.++++.+++.++++++.+.|++++|+.+.  .+.+
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~---------~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~--~~~~  381 (447)
T PRK00451        313 AREQHIRREKATSNICTNQALNALAAAIYMSLL---------GPEGLRELAEQNHQKAHYLAERLAEIGGVELF--DGPF  381 (447)
T ss_pred             ccccccccccccccccccHHHHHHHHHHHHHHH---------CHHHHHHHHHHHHHHHHHHHHHHhhcCCEEec--CCCe
Confidence                   1111 1122222222 2222222100         01346778889999999999999998788775  4555


Q ss_pred             EEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceE-EEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHH
Q 009517          449 YLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIV-LVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~-v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l  524 (533)
                      |.++-++.+.            +...++++++ ++||. ..++..|+. ...+++|+++.  .++++|+++++.|++++
T Consensus       382 ~~~~~v~~~~------------~~~~~~~~L~-~~gi~~~~~~~~~~~-~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~  446 (447)
T PRK00451        382 FNEFVVRLPK------------PAEEVNEALL-EKGILGGYDLGRYYP-ELGNHLLVCVTEKRTKEDIDALVAALGEVL  446 (447)
T ss_pred             EEEEEEecCC------------CHHHHHHHHH-hcCCCCCcccccccC-CcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            5442222211            1344555555 45665 456666652 22348999995  78889999999998754

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=99.93  E-value=3.8e-24  Score=221.08  Aligned_cols=372  Identities=12%  Similarity=0.054  Sum_probs=232.4

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      .+.++++...++.||++      ++|+..|....                      ..+++    ++++++++.+++.+.
T Consensus        25 ~i~~~~G~~l~D~dG~~------ylD~~~g~~~~----------------------~lGh~----~p~v~~ai~~ql~~l   72 (425)
T PRK07495         25 YADRAENAEIWDKEGRR------YIDFAAGIAVV----------------------NTGHR----HPRVIAAVKAQLDRF   72 (425)
T ss_pred             eEEeeeecEEEeCCCCE------EEEccccHHhh----------------------ccCCC----CHHHHHHHHHHHhhc
Confidence            44567777777778877      77776554321                      11111    688999999999863


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCC-CeEEEcCCcCcchHHHHHH
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-DGILCPIPQYPLYSASIAL  234 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vlv~~p~~~~~~~~~~~  234 (533)
                      .. ....+.+    .+....+++.+.+..+. -..++++++++|++|++.+++..+...| .+|+....+|++.......
T Consensus        73 ~~-~~~~~~~----~~~~~~la~~l~~~~p~-~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~  146 (425)
T PRK07495         73 TH-TCHQVVP----YENYVRLAERLNALVPG-DFAKKTIFVTTGAEAVENAVKIARAATGRSAVIAFGGGFHGRTFMGMS  146 (425)
T ss_pred             cC-cccCccC----CHHHHHHHHHHHHhCCC-CCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCccHHHhh
Confidence            21 0111122    23334455555543221 0126899999999999999998763334 6799999999987644332


Q ss_pred             h-CC-------------eEEEEecCCCCCCCCC----HHHHHHHHHHHHhcCCCeeEEEEeCCCCCCc-cCCCHHHHHHH
Q 009517          235 H-GG-------------TLVPYYLDEATGWGLE----TSEVKKQLEAAKAKGITVRALVVINPGNPTG-QVLAEENQRAI  295 (533)
Q Consensus       235 ~-g~-------------~~~~v~~~~~~~~~ld----~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG-~~~s~~~l~~i  295 (533)
                      . |.             .+..+|.... ..+.+    ++.+++.+... ..+.++++||++..+.-+| .++|++.+++|
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~l~~~~~~~-~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l  224 (425)
T PRK07495        147 LTGKVVPYKVGFGAMMPDVYHVPFPVE-LHGVSVEQSLAALDKLFKAD-VDPQRVAAIIIEPVQGEGGFYPAPAAFMKAL  224 (425)
T ss_pred             hcCCCcccccCCCCCCCCeEEecCCcc-cccccHHHHHHHHHHHHHhc-cCCCceEEEEECCccCCCCCccCCHHHHHHH
Confidence            2 11             1223333211 11223    34445555421 1123688888775433388 46899999999


Q ss_pred             HHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHH
Q 009517          296 VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQ  375 (533)
Q Consensus       296 ~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~  375 (533)
                      .++|++||+++|+||+|++|.+.|.  ...+..     .+..+|     +.+|||.+ + .|+|+||+++   ++++++.
T Consensus       225 ~~l~~~~g~llI~DEv~tG~gr~G~--~~a~~~-----~gv~pD-----i~tlsK~l-~-~G~pigav~~---~~~i~~~  287 (425)
T PRK07495        225 RELCDQHGILLIADEVQTGFARTGK--LFAMEH-----HEVAAD-----LTTMAKGL-A-GGFPLAAVTG---RAEIMDA  287 (425)
T ss_pred             HHHHHHcCCEEEEechhhcCCcCCC--ceeecc-----cCCCCC-----EEeehhhh-c-CCccceEEEE---cHHHHhc
Confidence            9999999999999999999876653  211111     111456     78999999 4 6999999998   8999887


Q ss_pred             HHHhh-hccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCceEecCCceeEE
Q 009517          376 IYKVA-SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL----EGITCNKAEGAMYL  450 (533)
Q Consensus       376 l~~~~-~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~gg~~~  450 (533)
                      +.... ..+++.++++++++.++|+           +.+ -..+.++.+++.+++++.|+++    |.+.-++.. |+++
T Consensus       288 ~~~~~~~~T~~~~pl~~aaa~a~l~-----------~l~-~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~-Gl~~  354 (425)
T PRK07495        288 PGPGGLGGTYGGNPLGIAAAHAVLD-----------VIE-EEDLCERANQLGNRLKQRLASLRETVPEIADIRGP-GFMN  354 (425)
T ss_pred             cCCCCcCCCCCCCHHHHHHHHHHHH-----------HHH-hchHHHHHHHHHHHHHHHHHHHHhhCCCeeeeecC-ceEE
Confidence            75433 3678899999998887774           111 1234445555555565555543    445555565 5677


Q ss_pred             ecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHHHHHH
Q 009517          451 FPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFHKNFM  528 (533)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~~~  528 (533)
                      |+.+..+..      ..........+.+.+.++||++.+....     .+.+||.+.  ++++++++++++|++++++++
T Consensus       355 ~iel~~~~~------~~~~~~~~~~~~~~~~~~Gvl~~~~g~~-----~~~~r~~Ppl~it~~~id~~~~~l~~~l~~~~  423 (425)
T PRK07495        355 AVEFNDADS------GLPSAEFANRVRLKALEKGLILLTCGVH-----GNVIRFLAPITIQDDVFAEALDILEASILEAS  423 (425)
T ss_pred             EEEEecCCC------CCccHHHHHHHHHHHHHCCeEEeecCCC-----CCEEEEeCCCccCHHHHHHHHHHHHHHHHHHh
Confidence            876642210      0000001122334556789999763211     238999985  899999999999999998765

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=99.93  E-value=1.6e-23  Score=212.75  Aligned_cols=306  Identities=15%  Similarity=0.146  Sum_probs=208.3

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCC----
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND----  216 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd----  216 (533)
                      |+++++++.+...+        |.   +..++++++++++.+.+|    .+++++|+|+++|+.+++.+++ ++||    
T Consensus        26 ~~~v~~a~~~~~~~--------~~---~~~~~~~~~~~~~a~~~g----~~~~~~~~g~t~al~~al~al~-~~Gd~~~~   89 (363)
T TIGR01437        26 SDEVADAQKRGAQN--------YF---EIKELVNKTGEYIANLLG----VEDAVIVSSASAGIAQSVAAVI-TRGNRYLV   89 (363)
T ss_pred             CHHHHHHHHHHHhc--------CC---CHHHHHHHHHHHHHHhhC----CCeEEEEcCHHHHHHHHHHHHh-cCCCcchh
Confidence            89999998887653        32   256788888888887766    4579999999999999999998 7888    


Q ss_pred             -----------eEEEcCCcCcch----HHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEE-EeCCC
Q 009517          217 -----------GILCPIPQYPLY----SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALV-VINPG  280 (533)
Q Consensus       217 -----------~Vlv~~p~~~~~----~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~ii-l~~p~  280 (533)
                                 +|+++.|.|..|    ...+...|++++.++.+    +.+|+++++++|++      ++++++ +++|+
T Consensus        90 ~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~~----~~~d~~~le~ai~~------~t~ai~~v~~~~  159 (363)
T TIGR01437        90 ENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGYA----NECSAEQLEAAITE------KTAAILYIKSHH  159 (363)
T ss_pred             hcccccccccceEEEECccchhcCCchHHHHHhcCCeEEEEcCC----CCCCHHHHHHhcCh------hceEEEEEecCC
Confidence                       999999888866    56778889999988763    46999999999987      788776 56889


Q ss_pred             CCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCee
Q 009517          281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRG  360 (533)
Q Consensus       281 NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~ri  360 (533)
                      ||+|.+.+   +++|+++|++||+++|+|++|..    .   ..   .. ..+   ..|   +++.|++|++   +|+++
T Consensus       160 ~~~g~~~~---~~~i~~~a~~~gi~vivD~a~~~----~---~~---~~-~~~---g~D---~~~~S~~K~l---~gp~~  216 (363)
T TIGR01437       160 CVQKSMLS---VEDAAQVAQEHNLPLIVDAAAEE----D---LQ---KY-YRL---GAD---LVIYSGAKAI---EGPTS  216 (363)
T ss_pred             CCcCCcCC---HHHHHHHHHHcCCeEEEECCCCC----c---hH---HH-HHc---CCC---EEEEeCCccc---CCCce
Confidence            99999998   77899999999999999999962    1   01   11 111   123   6788999977   48899


Q ss_pred             EEEEEecCCHHHHHHHHHhhhc---c---ccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009517          361 GYMEVTGFSAEVREQIYKVASV---N---LCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFN  434 (533)
Q Consensus       361 G~v~~~~~~~~~~~~l~~~~~~---~---~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  434 (533)
                      |+++.   ++++++.+......   .   ...+..++.++...+             .+......+.+.++++.+.+.|.
T Consensus       217 G~l~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~gl~aAl~~~-------------~~~~~~~~~~~~~~~~~l~~~L~  280 (363)
T TIGR01437       217 GLVLG---KKKYIEWVKLQSKGIGRAMKVGKENILGLTAALEQY-------------LSTGKESGAEMVAKLTPFIEALN  280 (363)
T ss_pred             EEEEE---cHHHHHHHHhccCCCcceeccCHHHHHHHHHHHHHH-------------HccCcccHHHHHHHHHHHHHHHh
Confidence            99987   88888776543221   0   111122333322222             11122333445566778999999


Q ss_pred             cCCCceEecCC--ceeEE-ecccCCCHHHHHHHHhcCCCChHHHHHHHHHccc--eEEEcCCCCCCCCCCceEEEEec-C
Q 009517          435 SLEGITCNKAE--GAMYL-FPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATG--IVLVPGSGFGQVPGTWHFRCTIL-P  508 (533)
Q Consensus       435 ~~~g~~~~~~~--gg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g--V~v~pg~~f~~~~g~~~iRis~~-~  508 (533)
                      ++||+.+..+.  .+... ...+.+..      +..+. +...+. +.|++.+  |.+++  .|. ..+  .+|+++. .
T Consensus       281 ~i~g~~~~~~~~~~~~~~~~~~v~~~~------~~~g~-~~~~l~-~~L~~~~~~I~~r~--~~~-~~~--~~~l~~~~~  347 (363)
T TIGR01437       281 TLKGVSASIVQDEAGRDIARAEIRFDE------SELGM-TAADVV-QALRQGEPAIYTRG--YKA-NEG--IIEIDPRSV  347 (363)
T ss_pred             cCCCeEEEEecCCCCCcCceEEEEEec------cCCCC-CHHHHH-HHHhcCCCCEEEee--eee-cCC--eEEEEeecC
Confidence            99998876422  11110 00011110      00112 223333 5566666  66665  233 344  7899996 7


Q ss_pred             CcCcHHHHHHHHHHHH
Q 009517          509 QEDKIPAIVTRLTDFH  524 (533)
Q Consensus       509 ~~e~i~~~~~~l~~~l  524 (533)
                      +++|++.++++|++++
T Consensus       348 ~~~e~~~~~~~l~~~~  363 (363)
T TIGR01437       348 TGGQLDIIVERIREIV  363 (363)
T ss_pred             CHHHHHHHHHHHHHhC
Confidence            8889999999988753

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=99.93  E-value=1.2e-23  Score=218.11  Aligned_cols=372  Identities=11%  Similarity=0.046  Sum_probs=229.4

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      ++.++++...++.||++      +||+..|....                      ..+++    ++++++++.+++.+.
T Consensus        24 ~~~~~~G~~l~D~dG~~------ylD~~~g~~~~----------------------~lGh~----~p~v~~ai~~ql~~~   71 (425)
T PRK09264         24 VFDKAKGSWLYDEDGKE------YIDFFAGAGAL----------------------NYGHN----NPVLKQALIDYLQRD   71 (425)
T ss_pred             cEEeeecCEEEeCCCCE------eeecccchhhc----------------------cCCCC----CHHHHHHHHHHHHhc
Confidence            56777777777788888      77765554321                      11111    689999999998753


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCC-CEEE-cCChHHHHHHHHHHhccCCC-CeEEEcCCcCcchHHHH
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFL-TDGASPAVHMMMQLLIRSEN-DGILCPIPQYPLYSASI  232 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~-~i~~-t~G~~~al~~~~~~l~~~~g-d~Vlv~~p~~~~~~~~~  232 (533)
                      .......+     ..+.+..+++.+.+....+...+ .+++ +++|++|++.+++.++..+| .+|+....+|++.....
T Consensus        72 ~~~~~~~~-----~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~  146 (425)
T PRK09264         72 GITHGLDM-----HTTAKREFLETFEETILKPRGLDYKVQFTGPTGTNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGS  146 (425)
T ss_pred             cccccccc-----CcHHHHHHHHHHHHhhcCCcCCCceEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEECCccCCccHHH
Confidence            21011111     12344445555543211111122 5656 58999999999998863344 67899999999976543


Q ss_pred             HHh-CC------------eEEEEecCCCCCCC-CCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCcc-CCCHHHHHHHHH
Q 009517          233 ALH-GG------------TLVPYYLDEATGWG-LETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ-VLAEENQRAIVD  297 (533)
Q Consensus       233 ~~~-g~------------~~~~v~~~~~~~~~-ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~-~~s~~~l~~i~~  297 (533)
                      ... |.            .+..+|........ -|++.+++.+.+......++.+||+...+...|+ +++++.+++|.+
T Consensus       147 ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~  226 (425)
T PRK09264        147 LAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAK  226 (425)
T ss_pred             HHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHH
Confidence            332 11            12333332110000 2677888888653211125778888877776786 678899999999


Q ss_pred             HHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHH
Q 009517          298 FCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY  377 (533)
Q Consensus       298 l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~  377 (533)
                      +|++||+++|+||++++|...|.  ...     .+..+..||     +.+|||.+ |..|+|+|++++   ++++. .+.
T Consensus       227 lc~~~g~llI~DEV~tG~GrtG~--~~~-----~~~~~v~PD-----i~t~~K~l-~~~G~pigav~~---~~~i~-~~~  289 (425)
T PRK09264        227 LCRKHDILLIVDDIQAGCGRTGT--FFS-----FERAGITPD-----IVTLSKSI-SGYGLPMALVLI---KPELD-VWK  289 (425)
T ss_pred             HHHHcCcEEEEechhhCCccccH--HHH-----HhhcCCCCC-----EEEecccc-CCCccceEEEEE---chhhh-ccC
Confidence            99999999999999999766553  111     111122577     45789999 545999999998   77763 433


Q ss_pred             Hh-hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCceEecCCceeEEec
Q 009517          378 KV-ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL----EGITCNKAEGAMYLFP  452 (533)
Q Consensus       378 ~~-~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~gg~~~~~  452 (533)
                      .. ...+++++++++.++.++|..          .. .-..+.++++++.+++++.|+++    |.+.......|+++++
T Consensus       290 ~~~~~~T~~gnp~~~aaa~a~l~~----------~~-~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~~~~vrg~Gl~~~i  358 (425)
T PRK09264        290 PGEHNGTFRGNNLAFVTATAALEE----------YW-SDDAFEKEVKAKGELVRERLEEIAAKYPGLGAEVRGRGMMQGI  358 (425)
T ss_pred             CCccCCCCCCCHHHHHHHHHHHHH----------HH-hhhHHHHHHHHHHHHHHHHHHHHHHhCCCceecceecccEEEE
Confidence            22 235678888888877666621          11 11234555666666666665543    3221112224556675


Q ss_pred             ccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHHHHHHHH
Q 009517          453 RIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFHKNFMDK  530 (533)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~~~~~  530 (533)
                      .+..+.            ....++ ..+.++||.+.++..++     ..||+++.  +++++|++++++|+++++++.++
T Consensus       359 ~l~~~~------------~~~~l~-~~~~~~Gv~~~~~~~~~-----~~lr~~p~l~~t~~ei~~~~~~l~~~l~~~~~~  420 (425)
T PRK09264        359 DFGDGE------------LAGKIA-AEAFENGLIIETSGPED-----EVVKLLPPLTIDEEELEEGLDILEEAVAEVLAE  420 (425)
T ss_pred             EecChH------------HHHHHH-HHHHHCCCEEeccCCCC-----CEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence            554211            122333 45567899998754332     37899975  89999999999999999887643

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=99.93  E-value=7.3e-24  Score=218.65  Aligned_cols=367  Identities=10%  Similarity=0.035  Sum_probs=225.7

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      ++.++++...++.||++      +||+..|....                      ..+++    ++++++++.+++.+.
T Consensus        20 ~~~~~~G~~l~D~dG~~------ylD~~~g~~~~----------------------~lGh~----~p~v~~ai~~ql~~~   67 (412)
T TIGR02407        20 VFEKAKGSTLWDEDGKE------YIDFFAGAGAL----------------------NYGHN----NPKLKQALIDYLADD   67 (412)
T ss_pred             eEEecccCEEEeCCCCE------EEEcccchhhc----------------------cCCCC----CHHHHHHHHHHHhhc
Confidence            55677777777778887      77776554322                      11222    699999999998753


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCCC-CCCCEEE-cCChHHHHHHHHHHhccCCC-CeEEEcCCcCcchHHHH
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPA-DPNDIFL-TDGASPAVHMMMQLLIRSEN-DGILCPIPQYPLYSASI  232 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~-~~~~i~~-t~G~~~al~~~~~~l~~~~g-d~Vlv~~p~~~~~~~~~  232 (533)
                      ..  ..  .. ....+.+..+++.+.+....+. ..+.+++ +++|++|++.+++..+..+| .+|+....+|++....+
T Consensus        68 ~~--~~--~~-~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~a  142 (412)
T TIGR02407        68 GI--IH--SL-DMATEAKREFLETFNEIILKPRGLDYKVQFPGPTGTNAVESALKLARKVTGRSNVVSFTNAFHGMTLGS  142 (412)
T ss_pred             cc--ee--cc-ccCcHHHHHHHHHHHHhccCccCCCceEEEeCCCchHHHHHHHHHHhhhcCCCeEEEECCCcCCchHHH
Confidence            21  11  11 1123444555555554311011 1135655 58999999999999863344 67999999999977554


Q ss_pred             HHh-CC------------eEEEEecCCCCCCC-CCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCcc-CCCHHHHHHHHH
Q 009517          233 ALH-GG------------TLVPYYLDEATGWG-LETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ-VLAEENQRAIVD  297 (533)
Q Consensus       233 ~~~-g~------------~~~~v~~~~~~~~~-ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~-~~s~~~l~~i~~  297 (533)
                      ... |.            .+..+|........ -+++.+++.+.+......++.+||+...++++|+ +++++.+++|.+
T Consensus       143 ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~  222 (412)
T TIGR02407       143 LSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEK  222 (412)
T ss_pred             HHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHH
Confidence            432 21            12222221100000 1366788877643211125788888777888998 678999999999


Q ss_pred             HHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCC-CCeeEEEEEecCCHHHHHHH
Q 009517          298 FCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGEC-GKRGGYMEVTGFSAEVREQI  376 (533)
Q Consensus       298 l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~-G~riG~v~~~~~~~~~~~~l  376 (533)
                      +|++||+++|+||++++|...|.  ...     .+..+..||     +.+|||.+ | + |+|+||+++   ++++ ..+
T Consensus       223 lc~~~g~llI~DEV~tG~GRtG~--~~a-----~~~~~v~PD-----i~~~~K~l-g-~~G~pigav~~---~~~~-~~~  284 (412)
T TIGR02407       223 LCRRHDILLIVDDIQAGCGRTGT--FFS-----FEPAGIEPD-----IVCLSKSI-S-GYGLPLALTLI---KPEL-DVW  284 (412)
T ss_pred             HHHHcCCEEEEechhhCCCccch--hHH-----hcccCCCCC-----EEEechhc-c-CCccceeEEEE---chhh-hcc
Confidence            99999999999999999766553  111     111222677     55789999 5 5 899999998   7765 444


Q ss_pred             HHhh-hccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCceEecCCceeEEe
Q 009517          377 YKVA-SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNS----LEGITCNKAEGAMYLF  451 (533)
Q Consensus       377 ~~~~-~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~g~~~~~~~gg~~~~  451 (533)
                      .... ..++++++++++++.+.|+.          +.+ .....++.++..+++.+.|++    ++++.......|+++|
T Consensus       285 ~~~~~~~T~~gnpl~~aaa~a~l~~----------~i~-~~~l~~~~~~~g~~l~~~l~~l~~~~~~~~~~vrg~Gl~~~  353 (412)
T TIGR02407       285 KPGEHNGTFRGNNLAFVTATAALEY----------YWS-DDAFEKAVQRKSEIIQERLDRIVAEYPELIKQVRGRGLMQG  353 (412)
T ss_pred             CCCccCCCCCccHHHHHHHHHHHHH----------Hhc-ccHHHHHHHHHHHHHHHHHHHHHhhCCCceEeeecceeEEE
Confidence            3222 36788899988887776641          011 012333334444444444432    3322233344567788


Q ss_pred             cccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHHHH
Q 009517          452 PRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~  526 (533)
                      +.+..+.            ....+. ..+.++||++.+...+     .+.|||++.  ++++++++++++|++++++
T Consensus       354 l~l~~~~------------~~~~~~-~~~~~~Gv~v~~~~~~-----~~~lr~~p~l~~t~~~i~~~~~~l~~~l~~  412 (412)
T TIGR02407       354 IECGDGD------------LAGKIA-KAAFENGLIIETSGPN-----DEVIKLLPPLTIDEETLQQGLDILEQAVEE  412 (412)
T ss_pred             EEecChH------------HHHHHH-HHHHHCCCEEeccCCC-----CCEEEEECCCCCCHHHHHHHHHHHHHHHhC
Confidence            6654211            112333 4556789999874322     237999995  8999999999999998853

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=99.93  E-value=2.2e-23  Score=214.13  Aligned_cols=322  Identities=14%  Similarity=0.153  Sum_probs=215.4

Q ss_pred             CHHHHHHHHHHHhcCCCC-CccccCC----CcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCC
Q 009517          141 SADSIERAWQILDQIPGR-ATGAYSH----SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN  215 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~-~~~~Y~~----~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g  215 (533)
                      |+.+.+++.+.+...... ....|..    ..+..++|+.++++++.     ...++|++|+|+++++..++..++ ++|
T Consensus        13 p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-----~~~~~v~~~~g~t~al~~~~~~~~-~~g   86 (376)
T TIGR01977        13 PDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNA-----PSSAHVVFTNNATTALNIALKGLL-KEG   86 (376)
T ss_pred             CHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCc-----CCCCeEEEeCCHHHHHHHHHHhcc-CCC
Confidence            788888888887753210 1223433    24567888888888752     123589999999999999999987 799


Q ss_pred             CeEEEcCCcCcchHH----HHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHH
Q 009517          216 DGILCPIPQYPLYSA----SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEEN  291 (533)
Q Consensus       216 d~Vlv~~p~~~~~~~----~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~  291 (533)
                      |+|+++.++|..+..    .++..|.+++.++.+.  ++.+|++++++++++      ++++|++++|+||||.+++   
T Consensus        87 d~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~~~~------~~~~v~~~~~~n~tG~~~~---  155 (376)
T TIGR01977        87 DHVITTPMEHNSVARPLECLKEQIGVEITIVKCDN--EGLISPERIKRAIKT------NTKLIVVSHASNVTGTILP---  155 (376)
T ss_pred             CEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCC--CCCcCHHHHHHhcCC------CCeEEEEECCCCCccccCC---
Confidence            999999999887653    3445699999998864  457899999999965      7899999999999999999   


Q ss_pred             HHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHH
Q 009517          292 QRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAE  371 (533)
Q Consensus       292 l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~  371 (533)
                      +++|.++|+++|+++|+|++++....    + ..+    ...   ..|   +++.|++|.+.|++|  +|.+++.  +..
T Consensus       156 ~~~i~~l~~~~~~~livD~a~~~g~~----~-~~~----~~~---~~D---~~~~s~~K~l~~p~g--~g~l~~~--~~~  216 (376)
T TIGR01977       156 IEEIGELAQENGIFFILDAAQTAGVI----P-IDM----TEL---AID---MLAFTGHKGLLGPQG--TGGLYIR--EGI  216 (376)
T ss_pred             HHHHHHHHHHcCCEEEEEhhhccCcc----C-CCc----hhc---CCC---EEEecccccccCCCC--ceEEEEc--CCc
Confidence            77889999999999999999975221    1 111    111   234   778899998854444  4555541  322


Q ss_pred             HHHHHHHh----------------hh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 009517          372 VREQIYKV----------------AS-VNLCSNISGQILASLVMSPPKVGDESYESYCA-ERDGILSSLARRAKTLEDAF  433 (533)
Q Consensus       372 ~~~~l~~~----------------~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~L  433 (533)
                      .+..+...                .. ...+++.....++..+++          .+.+ ..+.++++.+++.+.+.+.|
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~----------~~~~~g~~~~~~~~~~l~~~~~~~l  286 (376)
T TIGR01977       217 KLKPLKSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIK----------FIEKIGIANIAKKECMLTEKLLNGL  286 (376)
T ss_pred             CcCceecCCCccccccccccccchhhccCCCCCHHHHHHHHHHHH----------HHHHhCHHHHHHHHHHHHHHHHHHH
Confidence            11111100                00 112334444444444442          1211 23567778888899999999


Q ss_pred             hcCCCceEecC-----CceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCC-------CCCCce
Q 009517          434 NSLEGITCNKA-----EGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ-------VPGTWH  501 (533)
Q Consensus       434 ~~~~g~~~~~~-----~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~-------~~g~~~  501 (533)
                      .+++|+.++.+     .+++ +++.++  .          . +...+...+.+++||.+.+|..+..       ....+.
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~-v~~~~~--~----------~-~~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g~~~~~~  352 (376)
T TIGR01977       287 REINKVKIYGPADPANRVGV-VSFTVE--G----------I-DSEEVADILDEKFDIATRTGLHCAPLAHKTIGTFATGT  352 (376)
T ss_pred             hcCCCeEEeCCCCccccCCe-EEEEEC--C----------C-CHHHHHHHHhccCCEEEEcccccchHHHHHhCCCCCCe
Confidence            98878887654     2332 332232  1          1 2233444444444999999876642       123348


Q ss_pred             EEEEec--CCcCcHHHHHHHHHH
Q 009517          502 FRCTIL--PQEDKIPAIVTRLTD  522 (533)
Q Consensus       502 iRis~~--~~~e~i~~~~~~l~~  522 (533)
                      |||++.  +++++++.++++|++
T Consensus       353 iRis~~~~~t~~dv~~~~~~l~~  375 (376)
T TIGR01977       353 IRLSLGYFNTEEEIEKLLEALSE  375 (376)
T ss_pred             EEEecCCCCCHHHHHHHHHHHhh
Confidence            999996  889999999999875

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>PRK06460 hypothetical protein; Provisional

Probab=99.93  E-value=3.5e-23  Score=210.99  Aligned_cols=215  Identities=13%  Similarity=0.167  Sum_probs=154.1

Q ss_pred             cccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcC----cchHHHHHHhCCeEEEE
Q 009517          167 QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQY----PLYSASIALHGGTLVPY  242 (533)
Q Consensus       167 ~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~----~~~~~~~~~~g~~~~~v  242 (533)
                      ....+|++++|++++      .+ ..+++ +++++|+..++..++ ++||+|+++.|.|    ..|...++..|+++..+
T Consensus        45 p~~~~L~~~lA~l~g------~~-~~v~~-~sG~~ai~~~l~al~-~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~v~~~  115 (376)
T PRK06460         45 PTVLELTKKIVELEN------AE-MGVAF-SSGMGAISTTALALL-KPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVDAS  115 (376)
T ss_pred             ccHHHHHHHHHHHhC------CC-cEEEe-CCHHHHHHHHHHHHh-CCCCEEEEecCCcCcHHHHHHHHHHhhCcEEEEE
Confidence            347899999999975      22 23444 556799999999988 7999999997654    45567778889998887


Q ss_pred             ecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCC
Q 009517          243 YLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKK  322 (533)
Q Consensus       243 ~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~  322 (533)
                      +.+.       .+.+++.+++      ++++|++++|+||||.+++   +++|+++|+++|+++|+||+|..... .   
T Consensus       116 ~~~~-------~~~l~~~~~~------~tklV~l~sp~NPtG~v~d---~~~I~~la~~~g~~vivDea~~~~~~-~---  175 (376)
T PRK06460        116 NPGS-------DNIIEKAKSK------RYDVVFVENITNPLLRVVD---ITELSKVCKENGSILIVDATFSTPIN-Q---  175 (376)
T ss_pred             CCCC-------HHHHHHhcCC------CceEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCcCcccc-C---
Confidence            7542       2334443333      7899999999999999999   66789999999999999999975321 1   


Q ss_pred             cccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCC
Q 009517          323 FHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPP  401 (533)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~  401 (533)
                       .   .+  ..   .   ..|++.|+||.++|+.|.++||+++   ++++++.+.+... .+.+.++..+.   .++.. 
T Consensus       176 -~---~l--~~---~---~divv~S~sK~l~G~~~~~~G~~~~---~~~l~~~l~~~~~~~g~~~~~~~a~---~~l~~-  236 (376)
T PRK06460        176 -K---PL--EL---G---ADIVVHSASKFLAGHNDVIAGLAAG---YGKLLNVIDQMRRTLGTSLDPHAAY---LTLRG-  236 (376)
T ss_pred             -C---hh--hc---C---CCEEEeecceeccCCCCceEEEEec---CHHHHHHHHHHHHhcCCCCCHHHHH---HHHhc-
Confidence             0   11  11   1   2388999999985444478999987   8999998887654 33334443332   22321 


Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 009517          402 KVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGI  439 (533)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~  439 (533)
                                .++++...+++.++++.+.+.|++.|.+
T Consensus       237 ----------~~~l~~r~~~~~~n~~~l~~~L~~~p~v  264 (376)
T PRK06460        237 ----------IKTLKIRMDVINRNAEQIAEFLEGHPKV  264 (376)
T ss_pred             ----------hhhHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence                      2345566778888999999999987654

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.93  E-value=1.8e-24  Score=224.44  Aligned_cols=360  Identities=13%  Similarity=0.059  Sum_probs=228.3

Q ss_pred             HHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCC
Q 009517           77 VSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIP  156 (533)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~  156 (533)
                      ..++++...++.++++      ++|+..|.+..                      ..+.+    ++.+++++.+++.+. 
T Consensus        36 ~~~a~G~~l~d~dG~~------~lD~~~g~~~~----------------------~lGh~----~p~i~~a~~~~~~~~-   82 (426)
T PRK00062         36 IERAKGAYLYDVDGNE------YIDYVGSWGPM----------------------ILGHA----HPEVVEAVIEAAEKG-   82 (426)
T ss_pred             EEeCcCCEEEeCCCCE------EEEcccchhhh----------------------hcCCC----CHHHHHHHHHHHHhC-
Confidence            3445555444445555      99998886553                      11111    789999999999872 


Q ss_pred             CCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC-CCCeEEEcCCcCcchHHHHHHh
Q 009517          157 GRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS-ENDGILCPIPQYPLYSASIALH  235 (533)
Q Consensus       157 ~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~-~gd~Vlv~~p~~~~~~~~~~~~  235 (533)
                         ...|.+..+..+|.+.+++.+       ...+.++++++|++|++.+++.++.. .+++|+..+++|+++...+...
T Consensus        83 ---~~~~~~~~~~~~la~~L~~~~-------~~~~~v~~~~sGseA~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~  152 (426)
T PRK00062         83 ---LSFGAPTELEVELAELVIELV-------PSIEMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVK  152 (426)
T ss_pred             ---CcCCCCCHHHHHHHHHHHHhC-------CCCCEEEEecCHHHHHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhc
Confidence               233455555666666666654       13568999999999999999987521 2578999999999987444332


Q ss_pred             -CCe------------EE-----EEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCC-HHHHHHHH
Q 009517          236 -GGT------------LV-----PYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLA-EENQRAIV  296 (533)
Q Consensus       236 -g~~------------~~-----~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s-~~~l~~i~  296 (533)
                       |..            ..     .+...     ..|++.+++.+...   +.++++|+++....-+|.+.+ .+.+++|.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~~l~~~i~~~---~~~~aaiivEpv~~~~G~~~~~~~~l~~l~  224 (426)
T PRK00062        153 AGSGAATLGLPDSPGVPEDFAKHTLTAP-----YNDLEAVEELFEEY---GDEIAAVIVEPVAGNMGVVPPKPGFLEGLR  224 (426)
T ss_pred             cCccccccCCCCCCCCCcccccceEEcC-----CCCHHHHHHHHHhC---CCcEEEEEEeCCcCCCCCcCCCHHHHHHHH
Confidence             110            00     01110     13789999888642   236788888854444887765 88899999


Q ss_pred             HHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHH
Q 009517          297 DFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQI  376 (533)
Q Consensus       297 ~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l  376 (533)
                      ++|++||+++|+||+|.++.. +.  .... .. .++   .||     +.+|||.+ + .|||+|++++   ++++++.+
T Consensus       225 ~l~~~~~~llI~DEv~~G~r~-g~--~~~~-~~-~~~---~pD-----i~~~gK~l-~-~G~p~ga~~~---~~~i~~~~  286 (426)
T PRK00062        225 ELCDEHGALLIFDEVMTGFRV-AL--GGAQ-GY-YGV---TPD-----LTTLGKII-G-GGLPVGAFGG---RREIMEQL  286 (426)
T ss_pred             HHHHHcCCEEEEeechhcccc-CC--ccHH-HH-hCC---Ccc-----hHhhhhHh-h-CCCcceeeeE---HHHHHHhh
Confidence            999999999999999999843 32  1111 11 112   466     57899999 5 6999999988   89999888


Q ss_pred             HHh---hh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCCceEecCCcee
Q 009517          377 YKV---AS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAF----NSLEGITCNKAEGAM  448 (533)
Q Consensus       377 ~~~---~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L----~~~~g~~~~~~~gg~  448 (533)
                      ...   .. .+++++++.++++.+.|+...          +  +...++.+++.+++++.|    .+.+.+..+++.|.|
T Consensus       287 ~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~----------~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vrg~G~~  354 (426)
T PRK00062        287 APLGPVYQAGTLSGNPLAMAAGLATLKLLK----------E--PGFYEELEALTKRLAEGLKEAAKKAGIPLTVNRVGSM  354 (426)
T ss_pred             ccCCCceecccCcCCHHHHHHHHHHHHHHh----------c--chHHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecce
Confidence            522   22 567899999999988885211          1  123333333344444444    344323336678877


Q ss_pred             EEecccCCCHH-HHHHHHhcC-CCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHHH
Q 009517          449 YLFPRIQLPEK-AIKAAEAEK-TVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       449 ~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~  526 (533)
                      +.+. +..+.. ..... ..+ ......+ ...|.++||++.|.. +      +.+++++.+++++|++++++|++++++
T Consensus       355 ~~i~-l~~~~~~~~~~~-~~~~~~~~~~i-~~~l~~~Gv~v~~~~-~------~~~~~~~~~t~~ei~~~~~~l~~~l~~  424 (426)
T PRK00062        355 FGLF-FTDEPVTNYADA-KKSDTERFARF-FHAMLDEGVYLAPSQ-F------EAGFVSAAHTDEDIEKTLEAARKAFAA  424 (426)
T ss_pred             EEEE-EecCCCcchhhh-ccccHHHHHHH-HHHHHHCCeEeecCC-c------CceeeeccCCHHHHHHHHHHHHHHHHh
Confidence            7653 221100 00000 000 0001233 345567899998731 1      156888889999999999999999876


Q ss_pred             H
Q 009517          527 F  527 (533)
Q Consensus       527 ~  527 (533)
                      +
T Consensus       425 ~  425 (426)
T PRK00062        425 L  425 (426)
T ss_pred             h
Confidence            4

>PRK06234 methionine gamma-lyase; Provisional

Probab=99.93  E-value=6.3e-23  Score=210.88  Aligned_cols=218  Identities=15%  Similarity=0.145  Sum_probs=165.5

Q ss_pred             cC--CCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHH----HHHhC
Q 009517          163 YS--HSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS----IALHG  236 (533)
Q Consensus       163 Y~--~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~----~~~~g  236 (533)
                      |.  +..+..+|++++|++++        .+++++++||++|+..++..++ ++||+|+++.|.|..+...    +...|
T Consensus        58 Y~r~~~p~~~~Le~~iA~~~g--------~~~~l~~~sG~~Ai~~al~~ll-~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G  128 (400)
T PRK06234         58 YSRLGNPTSTEVENKLALLEG--------GEAAVVAASGMGAISSSLWSAL-KAGDHVVASDTLYGCTFALLNHGLTRYG  128 (400)
T ss_pred             ccCCCCccHHHHHHHHHHHhC--------CCcEEEEcCHHHHHHHHHHHHh-CCCCEEEEecCccchHHHHHHHHHhhCC
Confidence            55  56668999999999975        2468889999999999998888 8999999999988875543    46689


Q ss_pred             CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHc--CCEEEEcccccc
Q 009517          237 GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKE--GLVLLADEVYQE  314 (533)
Q Consensus       237 ~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~--~~~lI~De~y~~  314 (533)
                      ++++.++..       |++++++++++      ++++|++++|+||||.+.+   +++|.++|+++  |+++|+|++|..
T Consensus       129 ~~v~~vd~~-------d~e~l~~~i~~------~tklI~iesP~NPtG~v~d---l~~I~~la~~~~~~i~livDea~~~  192 (400)
T PRK06234        129 VEVTFVDTS-------NLEEVRNALKA------NTKVVYLETPANPTLKVTD---IKAISNIAHENNKECLVFVDNTFCT  192 (400)
T ss_pred             eEEEEECCC-------CHHHHHHHhcc------CCeEEEEECCCCCCCCcCC---HHHHHHHHHhcCCCCEEEEECCCCc
Confidence            998888643       78999999976      7999999999999999998   89999999997  999999999987


Q ss_pred             ccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCee-EEEEEecCCHHHHHHHHHhh-h--ccccCChHH
Q 009517          315 NVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRG-GYMEVTGFSAEVREQIYKVA-S--VNLCSNISG  390 (533)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~ri-G~v~~~~~~~~~~~~l~~~~-~--~~~~~~~~~  390 (533)
                      ..+.  .+   +     +.   ..|   |++.|+||.+ +++|+++ ||+++   ++++++.+.... .  .+.+.++..
T Consensus       193 ~~~~--~~---l-----~~---g~D---ivv~S~sK~l-~g~g~~~gG~v~~---~~~~~~~l~~~~~~~~~g~~l~p~~  252 (400)
T PRK06234        193 PYIQ--RP---L-----QL---GAD---VVVHSATKYL-NGHGDVIAGFVVG---KEEFINQVKLFGIKDMTGSVIGPFE  252 (400)
T ss_pred             hhcC--Cc---h-----hh---CCc---EEEeeccccc-cCCCCceeEEEEe---cHHHHHHHHHHHHHHhcCCCCCHHH
Confidence            5442  11   1     11   123   8899999999 6688875 99987   888888776432 1  344556666


Q ss_pred             HHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 009517          391 QILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGI  439 (533)
Q Consensus       391 q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~  439 (533)
                      .+.+...|+.              +....++..++...+.+.|++.|.+
T Consensus       253 a~l~~~~l~t--------------l~~r~~~~~~na~~~a~~L~~~~~V  287 (400)
T PRK06234        253 AFLIIRGMKT--------------LQIRMEKHCKNAMKVAKFLESHPAV  287 (400)
T ss_pred             HHHHHhccCc--------------HHHHHHHHHHHHHHHHHHHHcCCCe
Confidence            6655555532              2334444556777788888776443

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=99.93  E-value=9.9e-24  Score=214.07  Aligned_cols=300  Identities=14%  Similarity=0.100  Sum_probs=214.3

Q ss_pred             cccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC-----------C--CCeEEEcCCcCcc
Q 009517          161 GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS-----------E--NDGILCPIPQYPL  227 (533)
Q Consensus       161 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~-----------~--gd~Vlv~~p~~~~  227 (533)
                      ..|....+..++++++++++.+.+|.+...+++++|+|+++++..++++++..           +  ++.|+++.++|..
T Consensus        28 ~~y~~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~  107 (345)
T cd06450          28 FTWDESPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVS  107 (345)
T ss_pred             cccccCchhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhH
Confidence            44888888999999999999998886545568999999999999999987510           2  3478889999999


Q ss_pred             hHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEE
Q 009517          228 YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLL  307 (533)
Q Consensus       228 ~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI  307 (533)
                      +...+...|.+++.++++++  +.+|++.|++++++....+.++++|++++|+||||.+.+   +++|+++|+++|++++
T Consensus       108 ~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~---~~~i~~~~~~~~~~l~  182 (345)
T cd06450         108 VEKAAAYLDVKVRLVPVDED--GRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDP---LEEIADLAEKYDLWLH  182 (345)
T ss_pred             HHHHHHHHhcCeEEeeeCCC--CCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCC---HHHHHHHHHHhCCeEE
Confidence            98888888999999998754  489999999999875555657888999999999999866   8999999999999999


Q ss_pred             EccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhccccCC
Q 009517          308 ADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSN  387 (533)
Q Consensus       308 ~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~~~~~~  387 (533)
                      +|++|..+.+..... .   .....    ..+. ..+..|++|.+.  ++.++|++.+   +                  
T Consensus       183 vD~a~~~~~~~~~~~-~---~~~~~----~~~~-d~~~~s~~K~l~--~p~g~g~~~~---~------------------  230 (345)
T cd06450         183 VDAAYGGFLLPFPEP-R---HLDFG----IERV-DSISVDPHKYGL--VPLGCSAVLV---R------------------  230 (345)
T ss_pred             EechhhHHHhhChhh-H---HHhcC----cccc-CEEEEchhHhhC--CCcchHHHHH---H------------------
Confidence            999998766422110 0   00000    1121 245679999763  4678888754   2                  


Q ss_pred             hHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEec-CCceeEEecccCCCHHHHHHHHh
Q 009517          388 ISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNK-AEGAMYLFPRIQLPEKAIKAAEA  466 (533)
Q Consensus       388 ~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~gg~~~~~~~~~~~~~~~~~~~  466 (533)
                      .+.+.++...+.            ...+++++++..++++++.+.|.+++++.+.. ++.+++.|. +..+..       
T Consensus       231 ~~~~~~~l~~l~------------~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~iv~f~-~~~~~~-------  290 (345)
T cd06450         231 ALKLWATLRRFG------------RDGYGEHIDRIVDLAKYLAELIRADPGFELLGEPNLSLVCFR-LKPSVK-------  290 (345)
T ss_pred             HHHHHHHHHHHh------------HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEE-ECCcch-------
Confidence            334444444432            12346677778888999999999988887654 567776663 221100       


Q ss_pred             cCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--C-CcCcHHHHHHHHHH
Q 009517          467 EKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--P-QEDKIPAIVTRLTD  522 (533)
Q Consensus       467 ~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~-~~e~i~~~~~~l~~  522 (533)
                      .+. +...+ .+.|.++|+.+.++..+.   +..++|+++.  . +.++++++++.|++
T Consensus       291 ~~~-~~~~i-~~~L~~~g~~~~~~~~~~---~~~~lRis~~~~~~t~~di~~l~~~l~~  344 (345)
T cd06450         291 LDE-LNYDL-SDRLNERGGWHVPATTLG---GPNVLRFVVTNPLTTRDDADALLEDIER  344 (345)
T ss_pred             hhH-HHHHH-HHHHHhcCCEEEEeeEEC---CeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence            000 11233 345667776666655443   2348999996  3 78899999998875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=99.93  E-value=4.4e-23  Score=210.40  Aligned_cols=223  Identities=13%  Similarity=0.143  Sum_probs=167.0

Q ss_pred             ccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHH-h---
Q 009517          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL-H---  235 (533)
Q Consensus       160 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~-~---  235 (533)
                      ...|+.+. ..+|++++|++.+        .+++++++|+++|+..++..++ ++||+|+++.|+|......+.. .   
T Consensus        45 Y~R~~~p~-~~~le~~lA~l~g--------~~~v~~~~gg~~Ai~~~l~all-~~GD~Vl~~~p~y~~~~~~~~~~~~~~  114 (382)
T TIGR02080        45 YSRSGNPT-RDLLQQALAELEG--------GAGAVVTNTGMSAIHLVTTALL-GPDDLLVAPHDCYGGTYRLLNALAKKG  114 (382)
T ss_pred             ccCCCCch-HHHHHHHHHHHhC--------CCcEEEEcCHHHHHHHHHHHHc-CCCCEEEEcCCCcHHHHHHHHHHHhhc
Confidence            44565554 7889999999864        4689999999999999999998 8999999999999865443332 2   


Q ss_pred             CCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccc
Q 009517          236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN  315 (533)
Q Consensus       236 g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~  315 (533)
                      |.++..++       ..|++.+++++++      ++++|++++|+||||.+++   +++|+++|+++|+++|+|++|..+
T Consensus       115 ~~~v~~~d-------~~d~~~l~~ai~~------~tklV~l~~p~NPtG~~~d---l~~I~~la~~~g~~vvvD~a~~~~  178 (382)
T TIGR02080       115 CFRVLFVD-------QGDEQALRAALAQ------KPKLVLIETPSNPLLRVVD---IAKICHLAKAVGAVVVVDNTFLSP  178 (382)
T ss_pred             CeEEEEEC-------CCCHHHHHHhcCc------CceEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCccc
Confidence            34444432       2378999999976      7999999999999999998   788999999999999999999764


Q ss_pred             cccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHH
Q 009517          316 VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILA  394 (533)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~  394 (533)
                      .+..  +   + .    +   ..|   +++.|+||.+.|.+|++.|++++  .++++++.+..... .+.+.+++.+..+
T Consensus       179 ~~~~--p---l-~----~---gaD---ivv~S~sK~l~G~~~~~~G~i~~--~~~~~~~~l~~~~~~~g~~~sp~~a~l~  240 (382)
T TIGR02080       179 ALQN--P---L-A----L---GAD---LVLHSCTKYLNGHSDVIAGAVIA--KDPQVAEELAWWANNLGVTGGAFDSYLT  240 (382)
T ss_pred             ccCC--c---h-h----h---CCC---EEEeecceeccCCCCceeEEEEe--CCHHHHHHHHHHHHccCCCCCHHHHHHH
Confidence            3211  1   1 1    1   233   78899999987677899999876  36788888876655 4566777777766


Q ss_pred             HHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Q 009517          395 SLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGIT  440 (533)
Q Consensus       395 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~  440 (533)
                      ..-|+              .+..+.++..++...+.+.|++.|.+.
T Consensus       241 lr~l~--------------tl~~R~~~~~~na~~~a~~L~~~p~v~  272 (382)
T TIGR02080       241 LRGLR--------------TLVARMRLQQRNAQAIVEYLQTQPLVK  272 (382)
T ss_pred             Hcccc--------------hHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence            54442              233345556677778888888765543

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=99.93  E-value=7.4e-23  Score=208.82  Aligned_cols=223  Identities=13%  Similarity=0.131  Sum_probs=170.9

Q ss_pred             ccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHH----h
Q 009517          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL----H  235 (533)
Q Consensus       160 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~----~  235 (533)
                      ...|+.+. ...|++++|++.+        .+.+++++|+++++..++..++ ++||+|++++|+|++....+..    .
T Consensus        46 Y~R~~~pt-~~~L~~~lA~l~g--------~~~~i~~~sg~~Ai~~~l~~l~-~~GD~Vl~~~~~y~~~~~~~~~~~~~~  115 (386)
T PRK08045         46 YSRRGNPT-RDVVQRALAELEG--------GAGAVLTNTGMSAIHLVTTVFL-KPGDLLVAPHDCYGGSYRLFDSLAKRG  115 (386)
T ss_pred             eeCCCCcc-HHHHHHHHHHHhC--------CCeEEEECCHHHHHHHHHHHHc-CCCCEEEEcCCCcHHHHHHHHHHHhhC
Confidence            44556554 7889999999864        2469999999999999999988 8999999999999964433322    2


Q ss_pred             CCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccc
Q 009517          236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN  315 (533)
Q Consensus       236 g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~  315 (533)
                      |.++..++       ..|++.+++++++      ++++|++++|+||||.+++   +++|.++|+++|+++|+|++|...
T Consensus       116 gi~v~~vd-------~~d~e~l~~~l~~------~tklV~l~sP~NPtG~v~d---i~~I~~ia~~~g~~vivDeay~~~  179 (386)
T PRK08045        116 CYRVLFVD-------QGDEQALRAALAE------KPKLVLVESPSNPLLRVVD---IAKICHLAREAGAVSVVDNTFLSP  179 (386)
T ss_pred             CeEEEEeC-------CCCHHHHHHhccc------CCeEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCcc
Confidence            34555442       3589999999876      7999999999999999998   788999999999999999999764


Q ss_pred             cccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHH
Q 009517          316 VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILA  394 (533)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~  394 (533)
                      ...  .+   + .    +   ..|   +++.|++|.++|..+.+.|++++  .++++++.+..... .+.+.+++.+..+
T Consensus       180 ~~~--~p---l-~----~---gaD---ivv~S~tK~l~G~~d~~~G~vi~--~~~~~~~~l~~~~~~~g~~~~p~~~~l~  241 (386)
T PRK08045        180 ALQ--NP---L-A----L---GAD---LVLHSCTKYLNGHSDVVAGVVIA--KDPDVVTELAWWANNIGVTGGAFDSYLL  241 (386)
T ss_pred             ccC--Cc---h-h----h---CCC---EEEeecceeccCCCCceeEEEEe--CcHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            321  11   1 1    1   234   78999999997777788999876  35778777765544 5667888888888


Q ss_pred             HHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Q 009517          395 SLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGIT  440 (533)
Q Consensus       395 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~  440 (533)
                      ...|+              .+....++..+++..+.+.|++.|.+.
T Consensus       242 ~rgl~--------------tl~~R~~~~~~na~~la~~L~~~p~v~  273 (386)
T PRK08045        242 LRGLR--------------TLVPRMELAQRNAQAIVKYLQTQPLVK  273 (386)
T ss_pred             Hhhhc--------------cHHHHHHHHHHHHHHHHHHHHcCCCEe
Confidence            87774              245566777888888999998876654

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=99.92  E-value=8.2e-23  Score=212.60  Aligned_cols=383  Identities=13%  Similarity=0.048  Sum_probs=233.2

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      ++.++++...++.||++      +||+..|....                      ..+++    ++++++++.+++.+.
T Consensus        24 ~~~~~~G~~l~D~dG~~------ylD~~~g~~~~----------------------~lGh~----~p~i~~ai~~q~~~~   71 (442)
T TIGR00709        24 AFAKAQGCWVTDVEGKE------YLDFLAGAGTL----------------------ALGHN----HPNMKQKILDYLQSG   71 (442)
T ss_pred             eEEeccccEEEeCCCCE------EEEccccHhhh----------------------cCCCC----CHHHHHHHHHHHHhc
Confidence            55667777777777777      77776554322                      11222    689999999998763


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCC-EEEcCChHHHHHHHHHHhccCCC-CeEEEcCCcCcchHHHHH
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPND-IFLTDGASPAVHMMMQLLIRSEN-DGILCPIPQYPLYSASIA  233 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~-i~~t~G~~~al~~~~~~l~~~~g-d~Vlv~~p~~~~~~~~~~  233 (533)
                      ... ...|.+    .+.+..+|+.+....+....... ++++++|+||++.+++..+..+| .+|+....+|++....+.
T Consensus        72 ~~~-~~~~~~----~~~~~~lae~L~~~~p~~~~~~~~~f~~~sGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~  146 (442)
T TIGR00709        72 LPL-HTLDLT----TPLKDAFIEALLNIIPKRKMDYKLQFPGPSGADAVEAAIKLAKTYTGRTNVISFSGGFHGMTIGAL  146 (442)
T ss_pred             cCc-cccccC----cHHHHHHHHHHHHhCCCcCCCccEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCchHHHH
Confidence            210 111122    24445566666544321111124 45568999999999998863344 679999999999876554


Q ss_pred             HhCC-------------eEEEEecCCCC--CCC----CCHHH----HHHHHHHHHhcCCCeeEEEEeCCCCCCc-cCCCH
Q 009517          234 LHGG-------------TLVPYYLDEAT--GWG----LETSE----VKKQLEAAKAKGITVRALVVINPGNPTG-QVLAE  289 (533)
Q Consensus       234 ~~g~-------------~~~~v~~~~~~--~~~----ld~~~----l~~~i~~~~~~g~~~~~iil~~p~NPtG-~~~s~  289 (533)
                      ....             .+..++.....  .|+    .+.+.    +++.+........++.+|+++..++..| +++++
T Consensus       147 s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~  226 (442)
T TIGR00709       147 AVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPS  226 (442)
T ss_pred             hhcCChhhhccCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCH
Confidence            4321             12222221110  011    01222    3333322111123678888886654445 56899


Q ss_pred             HHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCC
Q 009517          290 ENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFS  369 (533)
Q Consensus       290 ~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~  369 (533)
                      +.+++|.++|++||+++|+||+|++|.++|.  +..+..     .++.||     +.++||.+ |. |+|+|++++   +
T Consensus       227 ~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~--~~a~~~-----~gv~PD-----iv~~gK~l-~~-G~Pigav~~---~  289 (442)
T TIGR00709       227 EWLQKIREVTRKHDIKLILDEVQAGFGRSGT--MFAFEH-----AGIEPD-----FVVMSKAV-GG-GLPLAVLLI---A  289 (442)
T ss_pred             HHHHHHHHHHHHcCCEEEEeccccCCCCCCc--hhHHHH-----cCCCCc-----EEEEcccc-cC-CcccEEEEE---c
Confidence            9999999999999999999999999877663  333222     122677     34489999 53 899999998   7


Q ss_pred             HHHHHHHHH-hhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCceEecC
Q 009517          370 AEVREQIYK-VASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL----EGITCNKA  444 (533)
Q Consensus       370 ~~~~~~l~~-~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~  444 (533)
                      ++ ++.+.. ....|+++++++++++.+.|+.           .+ .+.+.+.++++.++|.+.|+++    |.+.-++.
T Consensus       290 ~~-~~~~~~~~~~~T~~gnpla~aaa~a~L~~-----------i~-~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG  356 (442)
T TIGR00709       290 PE-FDAWQPAGHTGTFRGNQLAMVTGTEALNY-----------WK-DDNLAQNAQERGERITSFLDDMIKEHPCIGNVRG  356 (442)
T ss_pred             hH-HhccCCCcCCCCCCcCHHHHHHHHHHHHH-----------HH-hcCHHHHHHHHHHHHHHHHHHHHHhCCCeeeeec
Confidence            76 344322 2237789999999999998841           11 1345667777777777777654    44566777


Q ss_pred             CceeEEecccCCCHHHHHHHHhcCCC-ChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHH
Q 009517          445 EGAMYLFPRIQLPEKAIKAAEAEKTV-PDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLT  521 (533)
Q Consensus       445 ~gg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~  521 (533)
                      .|.|+.+ .+..+....+.......+ .....+...+.++||++.++...     .+.+|+.+.  +++++|++++++++
T Consensus       357 ~Gl~~~i-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~-----~~~l~~~Ppl~it~~ei~~~~~~l~  430 (442)
T TIGR00709       357 RGLMQGI-MIVDERQSKDATGAYPRDCELAAAIQGACFENGLLLETGGRE-----GEVFRLLCPITIDQEECEEGISRFK  430 (442)
T ss_pred             cceEEEE-EEccCcccccccccCCcchHHHHHHHHHHHHCCeEEeecCCC-----CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            8876554 232111000000000000 01122334456789999863222     238899885  89999999999999


Q ss_pred             HHHHHHHHHh
Q 009517          522 DFHKNFMDKF  531 (533)
Q Consensus       522 ~~l~~~~~~~  531 (533)
                      ++++++.++-
T Consensus       431 ~~l~~~~~~~  440 (442)
T TIGR00709       431 QAVEEALAEV  440 (442)
T ss_pred             HHHHHHHHHh
Confidence            9999886654

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.92  E-value=2.7e-22  Score=205.78  Aligned_cols=339  Identities=15%  Similarity=0.121  Sum_probs=217.0

Q ss_pred             CHHHHHHHHHHHhcCC---CCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCe
Q 009517          141 SADSIERAWQILDQIP---GRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDG  217 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~---~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~  217 (533)
                      ++++++++.+++.+..   ..+...|+...+..+|++++|++++.       .+.+++++|.+... .++..+. ++||.
T Consensus        14 ~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~g~-------e~al~~~sG~~a~~-~~i~~l~-~~GD~   84 (392)
T PLN03227         14 SPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGT-------ESAILYSDGASTTS-STVAAFA-KRGDL   84 (392)
T ss_pred             CHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHhCC-------CcEEEecCcHHHHH-HHHHHhC-CCCCE
Confidence            5788888888887522   11234588777889999999999852       35566666665555 6676677 89999


Q ss_pred             EEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHh--------cCCCeeEEEEeCCCCCCccCCCH
Q 009517          218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKA--------KGITVRALVVINPGNPTGQVLAE  289 (533)
Q Consensus       218 Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~--------~g~~~~~iil~~p~NPtG~~~s~  289 (533)
                      |+++++.|..+...+...+.+++.++..       |++++++.++....        ..+++++|++++++||+|.+++ 
T Consensus        85 Vl~~~~~h~s~~~~~~l~~~~~~~~~~~-------d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~-  156 (392)
T PLN03227         85 LVVDRGVNEALLVGVSLSRANVRWFRHN-------DMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAP-  156 (392)
T ss_pred             EEEeccccHHHHHHHHHcCCeEEEeCCC-------CHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccC-
Confidence            9999999999988888888877777643       34444444332211        1236888999999999999999 


Q ss_pred             HHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCC-CceEEEEecCCccCCCCCCCeeEEEEEecC
Q 009517          290 ENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEK-DISLVSFQSVSKGYYGECGKRGGYMEVTGF  368 (533)
Q Consensus       290 ~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vi~i~S~SK~~~gl~G~riG~v~~~~~  368 (533)
                        +++|+++|++||+++|+||+|. +...|..- ....+. .++   .+ ....|++.|+||.+    |++.|++++   
T Consensus       157 --l~~i~~l~~~~g~~livDe~~~-~g~~g~~G-~g~~~~-~g~---~p~~~~Div~~slsk~~----g~~gg~v~~---  221 (392)
T PLN03227        157 --LKELVALKEEFHYRLILDESFS-FGTLGKSG-RGSLEH-AGL---KPMVHAEIVTFSLENAF----GSVGGMTVG---  221 (392)
T ss_pred             --HHHHHHHHHHcCCEEEEECccc-ccccCCCC-CcHHHH-cCC---CCCCCceEEEeechhhh----hccCcEEec---
Confidence              8899999999999999999997 33323210 111111 011   22 12248888999976    567788877   


Q ss_pred             CHHHHHHHHHhhh-ccccC--ChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEe---
Q 009517          369 SAEVREQIYKVAS-VNLCS--NISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCN---  442 (533)
Q Consensus       369 ~~~~~~~l~~~~~-~~~~~--~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~---  442 (533)
                      ++++++.+..... .+++.  +++.+.++..++..          . ...+.++++++++.+++++.|++. ++.++   
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~p~~~~aa~~al~~----------~-~~~~~~~~~l~~~~~~l~~~L~~~-~~~~~~~~  289 (392)
T PLN03227        222 SEEVVDHQRLSGSGYCFSASAPPFLAKADATATAG----------E-LAGPQLLNRLHDSIANLYSTLTNS-SHPYALKL  289 (392)
T ss_pred             CHHHHHHHHHhCcCccccCCCCHHHHHHHHHHHHH----------H-hcCHHHHHHHHHHHHHHHHHHHhc-CCcccccc
Confidence            8888877765432 34444  35556666544421          1 112456777888999999999763 32211   


Q ss_pred             cC-------CceeEEecccCCCHHHHHHHHhcCCCC---hHHHHHHHHHccceEEEcCCC-----C-CCCCCCceEEEEe
Q 009517          443 KA-------EGAMYLFPRIQLPEKAIKAAEAEKTVP---DAFYCRRLLNATGIVLVPGSG-----F-GQVPGTWHFRCTI  506 (533)
Q Consensus       443 ~~-------~gg~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~gV~v~pg~~-----f-~~~~g~~~iRis~  506 (533)
                      +.       ..+..+.+.+......    .  ...+   ...++ +.+.++||.+.+...     + ..++  ..+|+++
T Consensus       290 rg~~~~~~~~~~~i~~i~~~~~~~~----~--~~~~~~~~~~~~-~~~~~~Gi~~~~~~~~~~~~~~~~P~--~~iR~~~  360 (392)
T PLN03227        290 RNRLVITSDPISPIIYLRLSDQEAT----R--RTDETLILDQIA-HHSLSEGVAVVSTGGHVKKFLQLVPP--PCLRVVA  360 (392)
T ss_pred             ccccccCCCCCCCEEEEEeCCHHHh----h--hhhhhhHHHHHH-HHHHHCCCEEEecccccCCcCCCCCC--ceEEEEe
Confidence            11       1122233223211100    0  0000   12333 455568999875211     1 1122  3789999


Q ss_pred             c--CCcCcHHHHHHHHHHHHHHHHHHhc
Q 009517          507 L--PQEDKIPAIVTRLTDFHKNFMDKFR  532 (533)
Q Consensus       507 ~--~~~e~i~~~~~~l~~~l~~~~~~~~  532 (533)
                      .  +++|+|++++++|+++++++.-+|-
T Consensus       361 ~~~~t~eei~~~~~~l~~~~~~~~~~~~  388 (392)
T PLN03227        361 NASHTREDIDKLLTVLGEAVEAILCKII  388 (392)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence            5  8999999999999999998765543

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=99.92  E-value=2.4e-22  Score=206.07  Aligned_cols=323  Identities=13%  Similarity=0.094  Sum_probs=216.9

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc---CCCCe
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR---SENDG  217 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~---~~gd~  217 (533)
                      .+.+++++.+++....+ ....|+   +..++.+.+.+.+.+.+|  .+.+++++++|+++++..+++.+..   .++++
T Consensus        33 ~~~~~~a~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~la~~~g--~~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~  106 (371)
T PRK13520         33 HPIARKAHEMFLETNLG-DPGLFP---GTAKLEEEAVEMLGELLH--LPDAYGYITSGGTEANIQAVRAARNLAKAEKPN  106 (371)
T ss_pred             hHHHHHHHHHHHhcCCC-CcccCc---cHHHHHHHHHHHHHHHhC--CCCCCeEEecCcHHHHHHHHHHHHhhccCCCce
Confidence            46777888887765322 122232   344444445555554445  4456789999999999999887751   14789


Q ss_pred             EEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHH
Q 009517          218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD  297 (533)
Q Consensus       218 Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~  297 (533)
                      |++.++.|..+...++..|.+++.++.+.  ++.+|++.|+++|++      ++++|++++++|+||.+.+   +++|.+
T Consensus       107 vl~~~~~h~s~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~------~~~~vi~~~~~~~tG~~~~---l~~I~~  175 (371)
T PRK13520        107 IVVPESAHFSFDKAADMLGVELRRAPLDD--DYRVDVKAVEDLIDD------NTIGIVGIAGTTELGQVDP---IPELSK  175 (371)
T ss_pred             EEecCcchHHHHHHHHHcCceEEEecCCC--CCcCCHHHHHHHHhh------CCEEEEEEcCCcCCcccCC---HHHHHH
Confidence            99999999999988888999999998864  457899999999987      6778888889999999998   999999


Q ss_pred             HHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHH
Q 009517          298 FCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY  377 (533)
Q Consensus       298 l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~  377 (533)
                      +|+++|+++++|++|.++...-......+ .+  .    ..+.. .+..|..| + +++|.++|+++.  .++++++.+.
T Consensus       176 l~~~~g~~livD~a~~~~~~~~~~~~~~~-~~--~----~~~vd-~~~~s~~K-~-~~a~~~~G~~~~--~~~~~~~~l~  243 (371)
T PRK13520        176 IALENGIFLHVDAAFGGFVIPFLDDPPNF-DF--S----LPGVD-SITIDPHK-M-GLAPIPAGGILF--RDESYLDALA  243 (371)
T ss_pred             HHHHcCCCEEEEecchhHHHHhhcCCCCc-cc--c----CCCCc-eEEECCcc-c-cCccCCceEEEE--cCHHHHHhhc
Confidence            99999999999999987542110000000 00  0    11222 33457778 4 456889998886  3666776654


Q ss_pred             Hhhhc---------cccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce-EecCCce
Q 009517          378 KVASV---------NLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGIT-CNKAEGA  447 (533)
Q Consensus       378 ~~~~~---------~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~~gg  447 (533)
                      .....         ..+.+.....++..+|+...         .+..+++.++..++++++.+.|+++ |+. +..+..+
T Consensus       244 ~~~~~~~~~~~~~~~gt~~~~~~~~~~~al~~l~---------~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~  313 (371)
T PRK13520        244 VDTPYLTSKKQATLTGTRSGAGVAATYAVMKYLG---------REGYRKVVERCMENTRWLAEELKER-GFEPVIEPVLN  313 (371)
T ss_pred             ccCccccCCCCcceEeeccChHHHHHHHHHhhhc---------HhHHHHHHHHHHHHHHHHHHHHHhC-CCEEecCCCce
Confidence            21110         01123344455555553110         1234567778888899999999988 887 5666666


Q ss_pred             eEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHHH
Q 009517          448 MYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~  525 (533)
                      ++.+ .++               +...+. ..|.++||.+.++..      ..++|||+.  .++++|+++++.|+++++
T Consensus       314 ~v~~-~~~---------------~~~~v~-~~L~~~gi~v~~~~~------~~~iRis~~~~~t~edi~~~~~~l~~~~~  370 (371)
T PRK13520        314 IVAF-DDP---------------NPDEVR-EKLRERGWRVSVTRC------PEALRIVCMPHVTREHIENFLEDLKEVKK  370 (371)
T ss_pred             EEEE-ecC---------------CHHHHH-HHHHHCCceeccCCC------CCEEEEEEECCCCHHHHHHHHHHHHHHhh
Confidence            5443 232               123333 445567999987431      238999985  788999999999988765

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=99.92  E-value=1.5e-22  Score=209.31  Aligned_cols=318  Identities=13%  Similarity=0.132  Sum_probs=212.3

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc--------
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR--------  212 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--------  212 (533)
                      ++++++++.+++.+.... ...+ ...-..+|.+.+++++    |    .+.++++++|++|++.+++.++.        
T Consensus        55 ~p~v~~a~~~~~~~~~~~-~~~~-~~~~~~~l~~~l~~~~----~----~~~~~~~~SGs~A~e~ai~~a~~~~~~~~~~  124 (401)
T TIGR01885        55 HPKIVKALTEQAQKLTLS-SRAF-YNDVFGEFAEYVTKLF----G----YDKVLPMNTGAEAVETAIKLARKWGYKVKGI  124 (401)
T ss_pred             CHHHHHHHHHHHHhcccc-cccc-CCHHHHHHHHHHHhhc----C----CCEEEEeCccHHHHHHHHHHHHHHhhhhcCC
Confidence            689999999988764321 1111 1222345555555543    3    36899999999999999998631        


Q ss_pred             CC-CCeEEEcCCcCcch-HHHHHHhCC------------eEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeC
Q 009517          213 SE-NDGILCPIPQYPLY-SASIALHGG------------TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVIN  278 (533)
Q Consensus       213 ~~-gd~Vlv~~p~~~~~-~~~~~~~g~------------~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~  278 (533)
                      .+ .+.|+....+|++. ...+...+.            .+..++.       .|++++++.++..   ++++.+|+++.
T Consensus       125 ~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~~---~~~~~avi~E~  194 (401)
T TIGR01885       125 PENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPY-------NNLEALEEALEDH---GPNVCAFIVEP  194 (401)
T ss_pred             CCCCCEEEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeCC-------CCHHHHHHHHHhc---CCCEEEEEEeC
Confidence            12 36788888888864 333333221            1222221       2789999988753   34678888888


Q ss_pred             CCCCCccCCC-HHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCC
Q 009517          279 PGNPTGQVLA-EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG  357 (533)
Q Consensus       279 p~NPtG~~~s-~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G  357 (533)
                      +++++|.+.+ .+.+++|.++|++||+++|+||+|.++.++|.  ..++     +..+..+|     +.+|||.+ +..|
T Consensus       195 v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~--~~~~-----~~~~~~~d-----i~~~gK~l-~~g~  261 (401)
T TIGR01885       195 IQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGK--LLCV-----DHENVKPD-----IVLLGKAL-SGGV  261 (401)
T ss_pred             ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccch--hhHH-----hhcCCCCC-----EEEeeccc-cCCC
Confidence            8999999886 45699999999999999999999998766553  1111     11111355     23578999 5455


Q ss_pred             CeeEEEEEecCCHHHHHHHHHh-hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 009517          358 KRGGYMEVTGFSAEVREQIYKV-ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL  436 (533)
Q Consensus       358 ~riG~v~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  436 (533)
                      +|+||+++   ++++++.+... ...+++.+++.+.++.++|+.           .+. +.+.++.+++.+++++.|+++
T Consensus       262 ~~ig~v~~---~~~i~~~~~~~~~~~t~~~~p~~~~aa~a~L~~-----------i~~-~~l~~~~~~~~~~~~~~L~~l  326 (401)
T TIGR01885       262 YPVSAVLA---DDDVMLTIKPGEHGSTYGGNPLACAVAVAALEV-----------LEE-EKLAENAEKLGEIFRDQLKKL  326 (401)
T ss_pred             CCcEEEEE---cHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHH-----------HHh-ccHHHHHHHHHHHHHHHHHhc
Confidence            99999998   89998877652 235677889999999888742           111 134456677788899999887


Q ss_pred             C-C-ceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCc
Q 009517          437 E-G-ITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDK  512 (533)
Q Consensus       437 ~-g-~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~  512 (533)
                      + . +..+++.|.|+.+. ++.+..        + .....++.. |.++||.+.|+.       .+.+||++.  +++++
T Consensus       327 ~~~~~~~~~g~g~~~~i~-~~~~~~--------~-~~~~~l~~~-l~~~Gv~v~~~~-------~~~lRi~p~l~~t~~~  388 (401)
T TIGR01885       327 PKPIITEVRGRGLLNAIV-IDESKT--------G-RTAWDLCLK-LKEKGLLAKPTH-------GNIIRLAPPLVITEEQ  388 (401)
T ss_pred             cCCceeEEeecCeeEEEE-eccCcc--------h-hHHHHHHHH-HHhCCEEEEecC-------CCEEEEeCCccCCHHH
Confidence            2 2 23456778777642 332110        0 012344444 457899998732       238999984  89999


Q ss_pred             HHHHHHHHHHHH
Q 009517          513 IPAIVTRLTDFH  524 (533)
Q Consensus       513 i~~~~~~l~~~l  524 (533)
                      |++++++|++++
T Consensus       389 i~~~l~~l~~~l  400 (401)
T TIGR01885       389 LDEGLEIIKKVI  400 (401)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998876

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=99.92  E-value=1.5e-22  Score=207.33  Aligned_cols=213  Identities=13%  Similarity=0.157  Sum_probs=159.4

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHH----HHHHhCCeEEEEec
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA----SIALHGGTLVPYYL  244 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~----~~~~~g~~~~~v~~  244 (533)
                      ..+|++.+|++++        .+++++++|+++|+..++..++ ++||+|+++.+.|.+...    .+...|++++.++.
T Consensus        63 ~~~le~~la~l~g--------~~~~v~~ssG~~Ai~~al~al~-~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~  133 (390)
T PRK08133         63 VTMFQERLAALEG--------AEACVATASGMAAILAVVMALL-QAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDL  133 (390)
T ss_pred             HHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHHh-CCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEECC
Confidence            6788888888864        4578999999999999999888 799999999998876443    45668999998875


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcc
Q 009517          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (533)
Q Consensus       245 ~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~  324 (533)
                      +       |++++++++++      ++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|....+.  .+  
T Consensus       134 ~-------d~~~l~~~i~~------~tklV~ie~p~NptG~v~d---l~~I~~la~~~gi~livD~t~~~~~~~--~p--  193 (390)
T PRK08133        134 T-------DLDAWRAAVRP------NTKLFFLETPSNPLTELAD---IAALAEIAHAAGALLVVDNCFCTPALQ--QP--  193 (390)
T ss_pred             C-------CHHHHHHhcCc------CCeEEEEECCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCCcccccC--Cc--
Confidence            3       68999999876      7999999999999999998   899999999999999999998653321  11  


Q ss_pred             cHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCee-EEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCC
Q 009517          325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRG-GYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPK  402 (533)
Q Consensus       325 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~ri-G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~  402 (533)
                       +     .+   ..|   +++.|+||.+ +.+|+++ ||+++   ++++++.+..... .....++..+.++..-+    
T Consensus       194 -l-----~~---g~D---ivv~S~sK~~-~g~g~~~GG~vv~---~~~~~~~~~~~~~~~g~~~~~~~a~~~l~gl----  253 (390)
T PRK08133        194 -L-----KL---GAD---VVIHSATKYL-DGQGRVLGGAVVG---SKELMEEVFGFLRTAGPTLSPFNAWVFLKGL----  253 (390)
T ss_pred             -h-----hh---CCc---EEEeecceee-cCCcceEeEEEEc---CHHHHHHHHHHHHHhCCCCCHHHHHHHHccc----
Confidence             1     11   133   7799999999 6689998 55555   7777776654443 33344555444433222    


Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Q 009517          403 VGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGIT  440 (533)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~  440 (533)
                                +.+..+.++..+++..+.+.|++.|++.
T Consensus       254 ----------~tl~~R~~~~~~~a~~la~~L~~~p~v~  281 (390)
T PRK08133        254 ----------ETLSLRMEAHSANALALAEWLEAHPGVE  281 (390)
T ss_pred             ----------chHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence                      2344555666778888999998876654

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=99.92  E-value=5.1e-23  Score=211.00  Aligned_cols=320  Identities=14%  Similarity=0.109  Sum_probs=214.0

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc-----CCC
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-----SEN  215 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-----~~g  215 (533)
                      ++++++++.+++.+..    ..+.  ....++...+|+++.+..    ..+++++++++++|++.+++.++.     .+|
T Consensus        54 ~p~v~~a~~~q~~~~~----~~~~--~~~~~~~~~la~~l~~~~----~~~~v~f~~SGseA~e~Aik~ar~~~~~~~~~  123 (395)
T PRK03715         54 NPGMVEALAAQAEKLI----NPSP--AFYNEPMAKLAGLLTQHS----CFDKVFFANSGAEANEGAIKLARKWGRKHKNG  123 (395)
T ss_pred             CHHHHHHHHHHHHhcc----cccc--cccCHHHHHHHHHHhhcc----CCCEEEEeCCcHHHHHHHHHHHHHHhhccCCC
Confidence            5889999999987632    2222  124567778888887542    246899999999999999998851     123


Q ss_pred             -CeEEEcCCcCcchHHHHHHh-CCeEEEEecCC-CCCC----CCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCC-
Q 009517          216 -DGILCPIPQYPLYSASIALH-GGTLVPYYLDE-ATGW----GLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVL-  287 (533)
Q Consensus       216 -d~Vlv~~p~~~~~~~~~~~~-g~~~~~v~~~~-~~~~----~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~-  287 (533)
                       .+|+..+.+|++........ |.........+ ..++    ..|++.+++.+.+      ++++|+++..++..|... 
T Consensus       124 r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~------~~aavi~Epv~~~gG~~~~  197 (395)
T PRK03715        124 AYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAELNDIASVEKLITD------KTVAVMLEPVQGEGGVIPA  197 (395)
T ss_pred             CcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCCceeeCCchHHHHHHHcCC------CceEEEEeCCcCCCCCccC
Confidence             67999999999875544333 32211111000 0111    1378888888864      688888887788888764 


Q ss_pred             CHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEec
Q 009517          288 AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTG  367 (533)
Q Consensus       288 s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~  367 (533)
                      +++.+++|.++|++||+++|+||++++|...|.  ..     ..+..+..||     +.+|+|.++  .|+++|++++  
T Consensus       198 ~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~--~~-----a~~~~gv~PD-----i~t~gK~lg--~G~p~~av~~--  261 (395)
T PRK03715        198 TREFMQQLRALTKQHGLLLIVDEVQTGCGRTGT--LF-----AYELSGIEPD-----IMTLGKGIG--GGVPLAALLA--  261 (395)
T ss_pred             CHHHHHHHHHHHHHcCCEEEEeccccCCCCCcc--hh-----hHhhcCCCCc-----eeeehhhhh--CCcceEEEEE--
Confidence            688899999999999999999999999655553  11     1121222577     568899994  4899999987  


Q ss_pred             CCHHHHHHHHHhhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCceEecC
Q 009517          368 FSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL---EGITCNKA  444 (533)
Q Consensus       368 ~~~~~~~~l~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~g~~~~~~  444 (533)
                       .+++..........|++.++++++++.+.|+           ..++ +.+.++.+++.+++++.|+++   .++..++.
T Consensus       262 -~~~i~~~~~~~~~~T~~g~pl~~aaala~L~-----------~l~~-~~l~~~~~~~g~~l~~~L~~l~~~~~i~~vrG  328 (395)
T PRK03715        262 -KAEVAVFEAGDQGGTYNGNPLMTAVGVAVIS-----------QLLA-PGFLEGVRARGEYLKEKLLELSEERGLEGERG  328 (395)
T ss_pred             -ccccccccCCCcCCCCCCCHHHHHHHHHHHH-----------HHHh-ccHHHHHHHHHHHHHHHHHHHhhcCCcCeEEc
Confidence             7777532111223677889999998888874           2221 446667777777888877754   24555666


Q ss_pred             CceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHcc---ceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHH
Q 009517          445 EGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNAT---GIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTR  519 (533)
Q Consensus       445 ~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~---gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~  519 (533)
                      .|.|+.+ .+..+.             ... +.+.+.+.   ||++.+.       +.+.+||++.  +++++|++++++
T Consensus       329 ~Glm~~i-~l~~~~-------------~~~-~~~~~~~~~~~Gi~~~~~-------~~~~lR~~p~l~~t~~ei~~~~~~  386 (395)
T PRK03715        329 EGLLRAL-LLGKDI-------------GPQ-IVEKARDMQPDGLLLNAP-------RPNLLRFMPALNVTTEEIDQMIAM  386 (395)
T ss_pred             ceeEEEE-EecCch-------------HHH-HHHHHHhccCCCEEEeec-------CCCEEEEeCCcccCHHHHHHHHHH
Confidence            6655443 232110             111 22333334   9998742       1237999995  899999999999


Q ss_pred             HHHHHHHH
Q 009517          520 LTDFHKNF  527 (533)
Q Consensus       520 l~~~l~~~  527 (533)
                      |+++++++
T Consensus       387 l~~~l~~~  394 (395)
T PRK03715        387 LRSVLDKL  394 (395)
T ss_pred             HHHHHHhh
Confidence            99998764

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=99.92  E-value=1.1e-23  Score=219.10  Aligned_cols=391  Identities=14%  Similarity=0.080  Sum_probs=241.7

Q ss_pred             CCCCcccccCcCcccccCcc-ccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCC
Q 009517           51 TSSPAITVDSLNPKVLKCEY-AVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPS  129 (533)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~  129 (533)
                      .+++.+.+..+++.++...+ .+.+.++.++++...++.||++      +||+..|....                    
T Consensus        58 ~ra~~~~pgGv~~~~r~~~~~~~~p~~~~~a~G~~l~D~dG~~------yiD~~~g~g~~--------------------  111 (474)
T PLN02482         58 KAAKELMPGGVNSPVRAFKSVGGQPIVFDRVKGSYAWDVDGNE------YIDYVGSWGPA--------------------  111 (474)
T ss_pred             HHHHhhCCCCCCCcchhhcccCCCCeeEEEeeeCEEEECCCCE------EEEeccccccc--------------------
Confidence            34455555566666655432 2333467888888888888888      88886664221                    


Q ss_pred             CCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHH
Q 009517          130 ILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQL  209 (533)
Q Consensus       130 ~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~  209 (533)
                      ++...      ++++++++.+++.+.    . .|..   ..++...+|+.+.+...   ..+++.++++|+||++.+++.
T Consensus       112 ~lGh~------~p~v~~av~~ql~~~----~-~~~~---~~~~~~~lAe~l~~~~p---~~~~v~f~~SGsEA~e~Alkl  174 (474)
T PLN02482        112 IIGHA------DDEVLAALAETMKKG----T-SFGA---PCLLENVLAEMVIDAVP---SVEMVRFVNSGTEACMGVLRL  174 (474)
T ss_pred             ccCCC------CHHHHHHHHHHHhhC----C-CCCC---CCHHHHHHHHHHHHhCC---CCCEEEEeCChHHHHHHHHHH
Confidence            11222      689999999999873    2 2221   12444556666665432   257999999999999999998


Q ss_pred             hccCCC-CeEEEcCCcCcchHHHHHHh-C--CeEEEEecCC------C-C----CCCCCHHHHHHHHHHHHhcCCCeeEE
Q 009517          210 LIRSEN-DGILCPIPQYPLYSASIALH-G--GTLVPYYLDE------A-T----GWGLETSEVKKQLEAAKAKGITVRAL  274 (533)
Q Consensus       210 l~~~~g-d~Vlv~~p~~~~~~~~~~~~-g--~~~~~v~~~~------~-~----~~~ld~~~l~~~i~~~~~~g~~~~~i  274 (533)
                      .+...| ++|+....+|+++...+... +  ......+...      . .    .| -|++.+++.+..+   +.++.+|
T Consensus       175 AR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-nd~~~l~~~l~~~---~~~iAav  250 (474)
T PLN02482        175 ARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPY-NDLEAVKKLFEAN---KGEIAAV  250 (474)
T ss_pred             HHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecC-CChHHHHHHHHhC---CCceEEE
Confidence            864345 67899999999976432111 1  0000000000      0 0    01 1788999888652   2367778


Q ss_pred             EEeCCCCCCccCC-CHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCC
Q 009517          275 VVINPGNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYY  353 (533)
Q Consensus       275 il~~p~NPtG~~~-s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~  353 (533)
                      |+.....-.|.+. +++.|++|.++|++||+++|+||++.+| ..+.  ...     .+..++.||     +.+|+|.++
T Consensus       251 I~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGf-R~g~--~ga-----~~~~gv~PD-----i~t~gK~lg  317 (474)
T PLN02482        251 ILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIAY--GGA-----QEYFGITPD-----LTTLGKVIG  317 (474)
T ss_pred             EECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCe-ecCc--chH-----hHHhCCCCC-----EEEecchhh
Confidence            7776666678655 5788999999999999999999999997 4332  111     122223677     568999994


Q ss_pred             CCCCCeeEEEEEecCCHHHHHHHHHh----hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 009517          354 GECGKRGGYMEVTGFSAEVREQIYKV----ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTL  429 (533)
Q Consensus       354 gl~G~riG~v~~~~~~~~~~~~l~~~----~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  429 (533)
                        .|+++|.+++   ++++++.+...    ...|++.++++++++.+.|+.           .++ +...+++.++.++|
T Consensus       318 --gG~Pigav~g---~~ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~-----------l~~-~~~~~~~~~~g~~l  380 (474)
T PLN02482        318 --GGLPVGAYGG---RREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-----------LQQ-PGTYEYLDKITKKL  380 (474)
T ss_pred             --CCCceEEEEE---cHHHHHhhccCCCcccccCcchhHHHHHHHHHHHHH-----------Hhc-cCHHHHHHHHHHHH
Confidence              5899999987   99999888532    235778899999998888742           111 24556666677777


Q ss_pred             HHHHhcC---CCceEe-cCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEE
Q 009517          430 EDAFNSL---EGITCN-KAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCT  505 (533)
Q Consensus       430 ~~~L~~~---~g~~~~-~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis  505 (533)
                      ++.|+++   -++.++ ..-++++.+.-...+.....+....+......++.. +.++||++.|.. +.  .+    -++
T Consensus       381 ~~~L~~l~~~~g~~~~~~~v~g~~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~-l~~~Gv~~~~~~-~~--~~----~ps  452 (474)
T PLN02482        381 IQGILEAGKKAGHEMCGGYISGMFGFFFTEGPVYNFADAKKSDTAKFARFHRG-MLEEGVYLAPSQ-FE--AG----FTS  452 (474)
T ss_pred             HHHHHHHHHhcCCCEEEcccceEEEEEEecCCccChhhhccCCHHHHHHHHHH-HHHCCeEEeccC-CC--CC----cCC
Confidence            7777664   133333 233444432111111100000000000011234444 456899998731 11  11    256


Q ss_pred             ecCCcCcHHHHHHHHHHHHHH
Q 009517          506 ILPQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       506 ~~~~~e~i~~~~~~l~~~l~~  526 (533)
                      +.+++++|+++++++++++++
T Consensus       453 l~ht~~dId~~l~al~~~l~~  473 (474)
T PLN02482        453 LAHTEEDIDFTIAAAERVLAR  473 (474)
T ss_pred             CCCCHHHHHHHHHHHHHHHHh
Confidence            679999999999999999875

>TIGR02006 IscS cysteine desulfurase IscS

Probab=99.92  E-value=1.2e-22  Score=210.05  Aligned_cols=320  Identities=15%  Similarity=0.135  Sum_probs=215.2

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccC------CCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhc---
Q 009517          141 SADSIERAWQILDQIPGRATGAYS------HSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI---  211 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~------~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~---  211 (533)
                      |+.+++++.+.+..... ......      ....+.++|+.++++++      .++++|++|+|+++++..++..+.   
T Consensus        16 ~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~la~~~g------~~~~~v~~~~g~t~a~~~~l~~l~~~~   88 (402)
T TIGR02006        16 DPRVAEKMMPYLTEKFG-NPASRSHSFGWEAEEAVENARNQVAELIG------ADSREIVFTSGATESNNLAIKGIAHFY   88 (402)
T ss_pred             CHHHHHHHHHHHHhcCC-CCChhhhHHHHHHHHHHHHHHHHHHHHhC------CCCCeEEEeCCHHHHHHHHHHHHHHhh
Confidence            78899988877753221 111111      11235667777887764      567899999999999999887653   


Q ss_pred             cCCCCeEEEcCCcCcchHHHH---HHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCC
Q 009517          212 RSENDGILCPIPQYPLYSASI---ALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLA  288 (533)
Q Consensus       212 ~~~gd~Vlv~~p~~~~~~~~~---~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s  288 (533)
                      ..+||+|+++.+.|+.+...+   +..|.+++.+++++  ++.+|++.+++++++      ++++|++++++||||.+.+
T Consensus        89 ~~~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~l~~------~~~lv~v~~~~n~tG~~~~  160 (402)
T TIGR02006        89 KSKGNHIITSKTEHKAVLDTCRYLEREGFEVTYLPPKS--NGLIDLEELKAAIRD------DTILVSIMHVNNEIGVIQD  160 (402)
T ss_pred             cCCCCEEEECCCccHHHHHHHHHHHhcCCEEEEEccCC--CCcCCHHHHHHhcCC------CCEEEEEECCCcCceeccc
Confidence            157899999999998766554   34599999998874  457899999999876      7899999999999999998


Q ss_pred             HHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecC
Q 009517          289 EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGF  368 (533)
Q Consensus       289 ~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~  368 (533)
                         +++|.++|+++|+++++|++++.    |..+ .++    .++   ..|   +++.|.+|.+ |++|  +|++++   
T Consensus       161 ---~~~I~~l~~~~g~~livD~a~a~----g~~~-~~~----~~~---~~D---~~~~s~~K~~-gp~G--~G~l~~---  216 (402)
T TIGR02006       161 ---IAAIGEICRERKVFFHVDAAQSV----GKIP-INV----NEL---KVD---LMSISGHKIY-GPKG--IGALYV---  216 (402)
T ss_pred             ---HHHHHHHHHHcCCEEEEEcchhc----CCcc-cCc----ccc---CCC---EEEEehhhhc-CCCc--eEEEEE---
Confidence               88999999999999999999974    2211 111    111   234   6677888976 6556  677776   


Q ss_pred             CHHHHHHHHHhh-------h-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Q 009517          369 SAEVREQIYKVA-------S-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGIT  440 (533)
Q Consensus       369 ~~~~~~~l~~~~-------~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~  440 (533)
                      .++....+....       . ...+++.....++..+++          ...+.++.+.+++++.++.+++.|++++++.
T Consensus       217 ~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~----------~~~~~~~~~~~~~~~l~~~l~~~l~~~~~v~  286 (402)
T TIGR02006       217 RRKPRVRLEALIHGGGHERGMRSGTLPTHQIVGMGEAFR----------IAKEEMAQDTAHVLALRDRLLNGIKSIEEVY  286 (402)
T ss_pred             ccCCCCCCCceecCCCccCCccCCCccHHHHHHHHHHHH----------HHHHhHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence            433222222111       1 113345555555555553          1223456677888999999999999888876


Q ss_pred             EecCC------ceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCC----------------CC
Q 009517          441 CNKAE------GAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQV----------------PG  498 (533)
Q Consensus       441 ~~~~~------gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~----------------~g  498 (533)
                      +..+.      ...+.|..+                +...+. ..+  ++|.+..|..+...                ..
T Consensus       287 ~~~~~~~~~p~~~~v~f~~~----------------~~~~~~-~~l--~~i~v~~G~~c~~~~~~~~~~l~~lg~~~~~~  347 (402)
T TIGR02006       287 LNGDLEHRVPGNLNVSFNYV----------------EGESLI-MAL--KDLAVSSGSACTSASLEPSYVLRALGINDELA  347 (402)
T ss_pred             EeCCccccCCCeEEEEEeCc----------------CHHHHH-Hhc--CCEEEechhhcCCCCCCccHHHHHcCCChhhc
Confidence            65321      112222111                112222 223  58888888766421                01


Q ss_pred             CceEEEEec--CCcCcHHHHHHHHHHHHHHHH
Q 009517          499 TWHFRCTIL--PQEDKIPAIVTRLTDFHKNFM  528 (533)
Q Consensus       499 ~~~iRis~~--~~~e~i~~~~~~l~~~l~~~~  528 (533)
                      .+.||+|+.  .|++||+++++.|+++++.+.
T Consensus       348 ~~~vR~S~~~~~t~edid~l~~~l~~~~~~~~  379 (402)
T TIGR02006       348 HSSIRFTIGRFTTEEEIDYAVKLVKSAIDKLR  379 (402)
T ss_pred             CceEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence            258999996  889999999999999887763

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=5.5e-22  Score=202.00  Aligned_cols=324  Identities=17%  Similarity=0.183  Sum_probs=232.6

Q ss_pred             CHHHHHHHHHHHhcCCCC-CccccCCCc----ccHHHHHHHHHHHHhhcCCCCC-CCCEEEcCChHHHHHHHHHHhc--c
Q 009517          141 SADSIERAWQILDQIPGR-ATGAYSHSQ----GIKGLRDTIAAGIEARDGFPAD-PNDIFLTDGASPAVHMMMQLLI--R  212 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~-~~~~Y~~~~----G~~~lr~aia~~~~~~~g~~~~-~~~i~~t~G~~~al~~~~~~l~--~  212 (533)
                      |..|++++.+.+.....+ +...|....    -+.+.|++++++++      .+ .++|++|.|+|+++..+...+.  .
T Consensus        35 p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~------a~~~~eIvft~~tT~aln~va~~l~~~~  108 (405)
T COG0520          35 PQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLN------ADSSDEIVFTRGTTEALNLVARGLGRSL  108 (405)
T ss_pred             CHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhC------CCCCCeEEEeCChhHHHHHHHHHhhhhh
Confidence            889999998877543321 122333222    35678888888886      55 4899999999999999999983  2


Q ss_pred             CCCCeEEEcCCcCcch----HHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCC
Q 009517          213 SENDGILCPIPQYPLY----SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLA  288 (533)
Q Consensus       213 ~~gd~Vlv~~p~~~~~----~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s  288 (533)
                      .+||+|++..-.|+..    ....+..|++++.+|+++  +..++.+.++..+++      +||+|.+++.+|.||++.+
T Consensus       109 ~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~~--~g~~~~~~~~~~i~~------~Tklvais~vSn~tG~~~p  180 (405)
T COG0520         109 KPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDD--DGLLDLDALEKLITP------KTKLVALSHVSNVTGTVNP  180 (405)
T ss_pred             cCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecCC--CCCcCHHHHHHhcCC------CceEEEEECccccccccch
Confidence            6899999999888763    445555699999999984  447899999998877      8999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecC
Q 009517          289 EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGF  368 (533)
Q Consensus       289 ~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~  368 (533)
                         +++|+++|+++|+++++|.+++-    +.. ..++    +++   +-|   +++.|-.|++.|+.|  +|.+.+   
T Consensus       181 ---v~~I~~la~~~ga~v~VDaaq~~----~h~-~idv----~~l---~~D---f~afsgHKwl~gP~G--iGvLy~---  237 (405)
T COG0520         181 ---VKEIAELAHEHGALVLVDAAQAA----GHL-PIDV----QEL---GCD---FLAFSGHKWLLGPTG--IGVLYV---  237 (405)
T ss_pred             ---HHHHHHHHHHcCCEEEEECcccc----Ccc-CCCc----hhc---CCC---EEEEcccccccCCCc--eEEEEE---
Confidence               99999999999999999999875    221 1222    222   344   778899996657556  577776   


Q ss_pred             CHHHHHHHHHhhh-----------------------ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 009517          369 SAEVREQIYKVAS-----------------------VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR  425 (533)
Q Consensus       369 ~~~~~~~l~~~~~-----------------------~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (533)
                      .+++++.+.+...                       ....++..+...+.++++       ...+  .-++.+.++.++.
T Consensus       238 r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~-------~~~~--ig~~~i~~~e~~L  308 (405)
T COG0520         238 RKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALD-------YLLE--IGMEAIEAHEREL  308 (405)
T ss_pred             chHHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHH-------HHHH--HhHHHHHHHHHHH
Confidence            8899888743210                       112344444455455553       1111  1146777888888


Q ss_pred             HHHHHHHHhcCCCceEecC----CceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCC----
Q 009517          426 AKTLEDAFNSLEGITCNKA----EGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVP----  497 (533)
Q Consensus       426 ~~~l~~~L~~~~g~~~~~~----~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~----  497 (533)
                      .+++.+.|+++|+++++.+    .++++.|. ++.            .. ..+ +...|.++||.++-|..+..+-    
T Consensus       309 ~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF~-v~~------------~~-~~d-v~~~L~~~gI~vr~g~~ca~p~~~~~  373 (405)
T COG0520         309 TEYLLEGLSELPGVEIYGPPDADRGGIVSFN-VKG------------IH-PHD-VATLLDEKGIAVRAGHHCAQPLHRLL  373 (405)
T ss_pred             HHHHHHHHhcCCCeEEecCCcccCceEEEEE-eCC------------CC-HHH-HHHHHHhCCeEEEeccccccHHHHhc
Confidence            9999999999999998875    36666552 321            11 222 3366778899999998775210    


Q ss_pred             -CCceEEEEec--CCcCcHHHHHHHHHHHHH
Q 009517          498 -GTWHFRCTIL--PQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       498 -g~~~iRis~~--~~~e~i~~~~~~l~~~l~  525 (533)
                       -...+|+|+.  +|+|||+++++.|+++.+
T Consensus       374 ~~~~~iR~S~~~YNt~edid~l~~aL~~~~~  404 (405)
T COG0520         374 GVDATIRASLHLYNTEEDVDRLLEALKKALA  404 (405)
T ss_pred             CCCCceEEEEeecCCHHHHHHHHHHHHHHhh
Confidence             0124999997  899999999999988764

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.92  E-value=8.3e-23  Score=212.16  Aligned_cols=362  Identities=14%  Similarity=0.124  Sum_probs=231.8

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      ++.++++...++.||++      ++|+..|....                      ..+++    ++++++++.+++.+.
T Consensus        27 ~~~~~~G~~l~D~dG~~------ylD~~~g~~~~----------------------~lGh~----~p~v~~ai~~q~~~~   74 (423)
T PRK05964         27 PIVRAEGAYLYLADGRE------LIDAISSWWVA----------------------THGHN----HPYIDQAIREQLDRL   74 (423)
T ss_pred             eEEeccccEEEeCCCCE------EEEcchhHHhc----------------------cCCCC----CHHHHHHHHHHHhhC
Confidence            56677777777778777      88886664332                      11222    689999999999863


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC------CC-CeEEEcCCcCcch
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS------EN-DGILCPIPQYPLY  228 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~------~g-d~Vlv~~p~~~~~  228 (533)
                      .......|.     .+.+..+|+.+.+...  ...++++++++|++|++.+++..+..      +| .+|+....+|++.
T Consensus        75 ~~~~~~~~~-----~~~~~~la~~l~~~~p--~~~~~v~f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~  147 (423)
T PRK05964         75 DHVIFAGFT-----HEPAERLAQRLVALTP--GGLDHVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGD  147 (423)
T ss_pred             CCccccccC-----CHHHHHHHHHHHHhCC--CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCc
Confidence            210011122     2344556666654432  12468999999999999999987521      33 6799999999987


Q ss_pred             HHHHHHhCCe-------------EEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeC-CCCCCccCC-CHHHHH
Q 009517          229 SASIALHGGT-------------LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVIN-PGNPTGQVL-AEENQR  293 (533)
Q Consensus       229 ~~~~~~~g~~-------------~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~-p~NPtG~~~-s~~~l~  293 (533)
                      ...+......             +..++....+....+++.+++.+...   +.++.+|+++. .++.+|..+ +++.++
T Consensus       148 t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~~---~~~iaavi~Ep~i~~~gG~~~~~~~~l~  224 (423)
T PRK05964        148 TIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATLDALEALLEKH---AGEIAAFIVEPLVQGAGGMLFYDPRYLA  224 (423)
T ss_pred             cHHHHhcCCCccccccccCcCCCCEEeCCCcchhHHHHHHHHHHHHHhC---CCcEEEEEEecccccCCCcccCCHHHHH
Confidence            6544432211             11222211000011267778877642   23677888776 578888755 889999


Q ss_pred             HHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHH
Q 009517          294 AIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVR  373 (533)
Q Consensus       294 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~  373 (533)
                      +|.++|++||+++|+||+++++.+.|.  ....     +..+..+|     +.+++|+++| .++++|++++   +++++
T Consensus       225 ~l~~lc~~~g~llI~DEv~tg~gr~G~--~~a~-----~~~~v~pD-----i~~~~K~l~g-G~~p~~av~~---~~~i~  288 (423)
T PRK05964        225 ELRRICDRHGVLLIFDEIATGFGRTGT--LFAC-----EQAGVSPD-----IMCLSKGLTG-GYLPLAATLC---TAEIF  288 (423)
T ss_pred             HHHHHHHHcCCEEEEechhhCCCcCcc--hhHH-----HhcCCCCC-----eeeeehhhhc-CcccceEEEE---cHHHH
Confidence            999999999999999999999766552  1111     11122566     4578999943 2389999988   99999


Q ss_pred             HHHHHh-------hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCceEec
Q 009517          374 EQIYKV-------ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL---EGITCNK  443 (533)
Q Consensus       374 ~~l~~~-------~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~g~~~~~  443 (533)
                      +.+...       ...+++.++++++++.+.|+.           .+ .+.+.++..++.+++++.|+++   +.+.-++
T Consensus       289 ~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~-----------l~-~~~~~~~~~~~g~~l~~~l~~l~~~~~i~~vr  356 (423)
T PRK05964        289 EAFYSDDRAKAFMHSPSYTANPLACAAANASLDL-----------FE-DEPVLERVAALSAGLAEGLEPFRDLPGVADVR  356 (423)
T ss_pred             HhhhcCCcccccccCCCCCcCHHHHHHHHHHHHH-----------HH-hcCHHHHHHHHHHHHHHHHHhhccCCCeEEee
Confidence            887531       235677899999988888741           11 1234556666666777777654   4444455


Q ss_pred             CCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHH
Q 009517          444 AEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLT  521 (533)
Q Consensus       444 ~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~  521 (533)
                      ..|.+..+ .+..+..  .       .....+ ...|.++||++.+.   +     +.+||++.  +++++|++++++++
T Consensus       357 g~Gl~~~i-~l~~~~~--~-------~~~~~l-~~~l~~~Gv~v~~~---~-----~~lR~~p~l~~t~edId~~v~~l~  417 (423)
T PRK05964        357 VLGAIGAV-ELDRPVL--E-------RDGPAL-RAFALERGVLLRPL---G-----NTIYLMPPYIITAEELDRITDAIV  417 (423)
T ss_pred             cccEEEEE-EeccCcc--h-------hHHHHH-HHHHHHCCeEEEec---C-----CEEEEeCCcccCHHHHHHHHHHHH
Confidence            66665432 2321110  0       002233 34456789999862   1     27999986  89999999999999


Q ss_pred             HHHHH
Q 009517          522 DFHKN  526 (533)
Q Consensus       522 ~~l~~  526 (533)
                      +++++
T Consensus       418 ~al~~  422 (423)
T PRK05964        418 EVADE  422 (423)
T ss_pred             HHHhh
Confidence            99876

>PRK06767 methionine gamma-lyase; Provisional

Probab=99.92  E-value=2.4e-22  Score=205.85  Aligned_cols=291  Identities=12%  Similarity=0.116  Sum_probs=197.1

Q ss_pred             cccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHH----hC
Q 009517          161 GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL----HG  236 (533)
Q Consensus       161 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~----~g  236 (533)
                      ..|+.+. ..+|++.+|++.+        .+..+++++|+.|+..++..++ ++||+|+++.|.|......+..    .|
T Consensus        56 ~r~~~pt-~~~Le~~lA~l~G--------~~~al~~~sG~~Ai~~~l~al~-~~Gd~Vv~~~~~y~~~~~~~~~~~~~~g  125 (386)
T PRK06767         56 SRLGNPT-VKLFEERMAVLEG--------GEEALAFGSGMAAISATLIGFL-KAGDHIICSNGLYGCTYGFLEVLEEKFM  125 (386)
T ss_pred             cCCCCcc-hHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHHh-CCCCEEEEcCCcHHHHHHHHHHHHhhcC
Confidence            3444444 7899999999975        2345555666789999998887 8999999999988876554433    35


Q ss_pred             CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEcccccccc
Q 009517          237 GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENV  316 (533)
Q Consensus       237 ~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~  316 (533)
                      .++..++       ..|++++++++++      ++++|++++|+||||.+++   +++|.++|+++|+++|+|++|....
T Consensus       126 i~~~~~~-------~~d~~~l~~~i~~------~tklV~lesp~NptG~v~d---l~~I~~la~~~g~~vivD~a~a~~~  189 (386)
T PRK06767        126 ITHSFCD-------METEADIENKIRP------NTKLIFVETPINPTMKLID---LKQVIRVAKRNGLLVIVDNTFCSPY  189 (386)
T ss_pred             eEEEEeC-------CCCHHHHHHhhCc------CceEEEEeCCCCCCceecC---HHHHHHHHHHcCCEEEEECCCcccc
Confidence            5444443       2378999999876      7999999999999999998   8899999999999999999996433


Q ss_pred             ccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCee-EEEEEecCCHHHHHHHHHh-hh-ccccCChHHHHH
Q 009517          317 YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRG-GYMEVTGFSAEVREQIYKV-AS-VNLCSNISGQIL  393 (533)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~ri-G~v~~~~~~~~~~~~l~~~-~~-~~~~~~~~~q~a  393 (533)
                      +.  .+   + .    .   ..|   +++.|+||.+ +.+|.|+ ||+++   +++.+..+.+. .. .....+++.+++
T Consensus       190 ~~--~p---l-~----~---g~D---iv~~S~sK~l-~g~g~~~gG~v~~---~~~~i~~~~~~~~~~~g~~~~~~~a~l  249 (386)
T PRK06767        190 LQ--RP---L-E----L---GCD---AVVHSATKYI-GGHGDVVAGVTIC---KTRALAEKIRPMRKDIGGIMAPFDAWL  249 (386)
T ss_pred             cC--Cc---h-h----c---CCc---EEEecCccee-cCCCCceeEEEEe---ChHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence            21  11   1 1    1   123   7788999999 5578885 88887   78877665433 22 323345665555


Q ss_pred             HHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEec------------CCceeEEecccCCCHHHH
Q 009517          394 ASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNK------------AEGAMYLFPRIQLPEKAI  461 (533)
Q Consensus       394 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~------------~~gg~~~~~~~~~~~~~~  461 (533)
                      +...|+              .+..+.++.+++.+.+.+.|+++|++..+.            ..||++.|- ++...   
T Consensus       250 ~~~~L~--------------tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~~~~~~~~~~~~gg~vsf~-l~~~~---  311 (386)
T PRK06767        250 LLRGLK--------------TLAVRMDRHCDNAEKIVSFLKNHDAVEGVWYPEGELASRQMKRGGGVISFS-IKGGK---  311 (386)
T ss_pred             HHcCCC--------------cHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCcHHHHHhCCCCCceEEEE-EcCCH---
Confidence            544443              234455677888899999999998877432            245665552 32111   


Q ss_pred             HHHHhcCCCChHHHHHHHHHccceEEEcCCCCCC------------------CC--CCceEEEEecCCcCcHHHHHHHHH
Q 009517          462 KAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ------------------VP--GTWHFRCTILPQEDKIPAIVTRLT  521 (533)
Q Consensus       462 ~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~------------------~~--g~~~iRis~~~~~e~i~~~~~~l~  521 (533)
                              .+...|+ ..|+..++.+.-|.....                  ..  ..+.||||+++  |+.+.+++-|.
T Consensus       312 --------~~~~~f~-~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGl--E~~~dl~~dl~  380 (386)
T PRK06767        312 --------EETQAFI-NDLHFITIAVSLGDTETLIQHPATMTHAAIPAELRQEMGIYDNLIRLSVGL--ESWEDIVSDLE  380 (386)
T ss_pred             --------HHHHHHH-HhCCccEEecCCCCcCccccCCCccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHH
Confidence                    0123333 445666766666643310                  00  13489999996  45788888888


Q ss_pred             HHHHH
Q 009517          522 DFHKN  526 (533)
Q Consensus       522 ~~l~~  526 (533)
                      +++..
T Consensus       381 ~al~~  385 (386)
T PRK06767        381 QALKK  385 (386)
T ss_pred             HHHhh
Confidence            88763

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=99.92  E-value=3.7e-22  Score=207.95  Aligned_cols=339  Identities=12%  Similarity=0.054  Sum_probs=211.0

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCC-CeEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-DGIL  219 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vl  219 (533)
                      ++++++++.+++.+........| .    .+....+++.+.+..+  -..+.++++++|++|++.+++..+...| .+|+
T Consensus        61 ~p~v~~a~~~q~~~~~~~~~~~~-~----~~~~~~la~~L~~~~~--~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii  133 (433)
T PRK08117         61 HPKVVQAIKEQADKLMHGPSGVI-Y----YESILKLAEELAEITP--GGLDCFFFSNSGAEAIEGALKLAKHVTKRPYII  133 (433)
T ss_pred             CHHHHHHHHHHHHhccCcccccc-C----CHHHHHHHHHHHHhCC--CCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEE
Confidence            68999999999876321000111 1    2333444444444321  2246899999999999999998652234 6799


Q ss_pred             EcCCcCcchHHHHHHh-CC-------------eEEEEecCCCC--CCC--------CCHHHHHHHHHHHHhcCCCeeEEE
Q 009517          220 CPIPQYPLYSASIALH-GG-------------TLVPYYLDEAT--GWG--------LETSEVKKQLEAAKAKGITVRALV  275 (533)
Q Consensus       220 v~~p~~~~~~~~~~~~-g~-------------~~~~v~~~~~~--~~~--------ld~~~l~~~i~~~~~~g~~~~~ii  275 (533)
                      ....+|++........ +.             .+..+|.....  .++        -|++.+++.++.... +.++.+||
T Consensus       134 ~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~aavi  212 (433)
T PRK08117        134 SFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFKHQVT-PEEVAAVI  212 (433)
T ss_pred             EECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccCchhHHHHHHHHHHHHHHHhccC-CCcEEEEE
Confidence            9999999866443222 10             01222221100  001        145666666653111 22677888


Q ss_pred             EeCCCCCCccC-CCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCC
Q 009517          276 VINPGNPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYG  354 (533)
Q Consensus       276 l~~p~NPtG~~-~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~g  354 (533)
                      ++......|.+ ++++++++|.++|++||+++|+||+|++|.++|.  ....     +..+..+|     +.+|||++ |
T Consensus       213 ~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~--~~~~-----~~~gv~pD-----i~t~sK~l-g  279 (433)
T PRK08117        213 IEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGE--WFAA-----QTFGVVPD-----IMTIAKGI-A  279 (433)
T ss_pred             ECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCcccc--chhH-----hhcCCCCC-----Eeehhhhc-c
Confidence            77767667774 5788899999999999999999999999766553  1111     11112466     57999999 5


Q ss_pred             CCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009517          355 ECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAF  433 (533)
Q Consensus       355 l~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L  433 (533)
                       .|+|+|++++   ++++++.+..... .+++.++++++++.+.|+..           + .+.+.++++++.+++++.|
T Consensus       280 -~G~pigav~~---~~~i~~~~~~~~~~~T~~~np~~~aaa~a~L~~l-----------~-~~~l~~~~~~~g~~l~~~L  343 (433)
T PRK08117        280 -SGLPLSAVVA---SKELMEQWPLGSHGTTFGGNPVACAAALATLEVI-----------K-EEKLLDNANEMGAYALERL  343 (433)
T ss_pred             -CCCcceeEEE---cHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHH-----------H-hccHHHHHHHHHHHHHHHH
Confidence             6999999998   8999887754333 66788999999999888521           1 1234455555566666666


Q ss_pred             hcC----CCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEe--c
Q 009517          434 NSL----EGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTI--L  507 (533)
Q Consensus       434 ~~~----~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~--~  507 (533)
                      +++    +.+.-++..|.+ +.+.+..+.+.       ........+.+.+.++||.+.+.   +  ...+++||++  .
T Consensus       344 ~~l~~~~~~~~~vrg~Gl~-~gi~~~~~~~~-------~~~~~~~~~~~~l~~~Gv~~~~~---g--~~~~~lRl~p~~~  410 (433)
T PRK08117        344 EVLKEKHPVIGDVRGIGLM-IGIEIVDPDGE-------PDGDAVEKILDKCLEKGLLFYLC---G--NAGNVLRMIPPLT  410 (433)
T ss_pred             HHHHhcCCceeeeecCCcE-EEEEEecCCCC-------cchHHHHHHHHHHHHCCCEEeec---C--CCCCEEEEeCCcc
Confidence            553    223334455543 44334321100       00011222335566789998763   1  1124899996  4


Q ss_pred             CCcCcHHHHHHHHHHHHHHHHH
Q 009517          508 PQEDKIPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       508 ~~~e~i~~~~~~l~~~l~~~~~  529 (533)
                      +++++|++++++|.++++++.+
T Consensus       411 ~t~~~i~~~~~~l~~~l~~~~~  432 (433)
T PRK08117        411 VTKEEIDEGLDILDEALTEYEA  432 (433)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhc
Confidence            8999999999999999987754

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=99.92  E-value=2.9e-22  Score=205.31  Aligned_cols=213  Identities=12%  Similarity=0.126  Sum_probs=161.2

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHH----HHHHhCCeEEEEec
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA----SIALHGGTLVPYYL  244 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~----~~~~~g~~~~~v~~  244 (533)
                      ..+|++.+|++.+        .+..++++++++|+..++..++ .+||+|+++.|+|.+...    .+...|+++..++ 
T Consensus        66 ~~~le~~lA~l~g--------~~~~i~~ssG~~Ai~~~l~all-~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~vd-  135 (398)
T PRK08249         66 VQAFEEKVRILEG--------AEAATAFSTGMAAISNTLYTFL-KPGDRVVSIKDTYGGTNKIFTEFLPRMGVDVTLCE-  135 (398)
T ss_pred             HHHHHHHHHHHhC--------CCeEEEeCChHHHHHHHHHHhc-CCCCEEEEcCCchHHHHHHHHHHHhhCCeEEEEcC-
Confidence            6889999999875        3457778888999999999888 799999999999987543    3455788877664 


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcc
Q 009517          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (533)
Q Consensus       245 ~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~  324 (533)
                            ..|++.++++|++      ++++|++++|+||||.+++   +++|+++|+++|+++|+|++|..+...  .+  
T Consensus       136 ------~~d~e~l~~~i~~------~tklV~ie~p~NPtg~v~d---l~~I~~la~~~gi~livD~t~a~~~~~--~~--  196 (398)
T PRK08249        136 ------TGDHEQIEAEIAK------GCDLLYLETPTNPTLKIVD---IERLAAAAKKVGALVVVDNTFATPINQ--NP--  196 (398)
T ss_pred             ------CCCHHHHHHhcCC------CCeEEEEECCCCCCCccCC---HHHHHHHHHHcCCEEEEECCcCccccC--Cc--
Confidence                  3589999999976      7999999999999999998   888999999999999999999864431  11  


Q ss_pred             cHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCee-EEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCC
Q 009517          325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRG-GYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPK  402 (533)
Q Consensus       325 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~ri-G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~  402 (533)
                       . .    .   ..|   +++.|+||.+ |.+|.++ ||+++   ++++++.+..... ...+.++..++++...|+   
T Consensus       197 -l-~----~---~~D---ivv~S~sK~l-~g~~~~~gG~vv~---~~~l~~~l~~~~~~~g~~~s~~~a~l~l~~l~---  257 (398)
T PRK08249        197 -L-A----L---GAD---LVIHSATKFL-SGHADALGGVVCG---SKELMEQVYHYREINGATMDPMSAYLILRGMK---  257 (398)
T ss_pred             -h-h----h---CCC---EEeccCceec-CCCCCceEEEEEC---CHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcc---
Confidence             1 1    1   234   6789999998 4466666 55554   8889888877665 445666777666655543   


Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Q 009517          403 VGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGIT  440 (533)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~  440 (533)
                                 .+....++..++++.+.+.|++.|.+.
T Consensus       258 -----------tL~~R~~~~~~na~~la~~L~~~p~v~  284 (398)
T PRK08249        258 -----------TLKLRVRQQQESAMALAKYLQTHPKVE  284 (398)
T ss_pred             -----------hHHHHHHHHHHHHHHHHHHHHcCCCee
Confidence                       234444566777888888898865543

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=99.92  E-value=5.3e-22  Score=203.67  Aligned_cols=221  Identities=15%  Similarity=0.216  Sum_probs=163.4

Q ss_pred             ccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcc----hHHHHHHhCC
Q 009517          162 AYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPL----YSASIALHGG  237 (533)
Q Consensus       162 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~----~~~~~~~~g~  237 (533)
                      .|+.+. ..+|++.+|++.+      . .+. +++++|++++..++..++ ++||+|+++.|+|..    +...+...|.
T Consensus        56 R~~~p~-~~~Le~~lA~l~g------~-~~~-v~~~sG~~Ai~~~l~all-~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~  125 (405)
T PRK08776         56 RSGNPT-RDLLGEALAELEG------G-AGG-VITATGMGAINLVLNALL-QPGDTLVVPHDAYGGSWRLFNALAKKGHF  125 (405)
T ss_pred             CCCChH-HHHHHHHHHHHhC------C-Cce-EEEcCHHHHHHHHHHHHh-CCCCEEEEccCCchHHHHHHHHHHHhcCc
Confidence            344433 5678888888753      1 234 455556899999999998 899999999999987    3444555687


Q ss_pred             eEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccc
Q 009517          238 TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY  317 (533)
Q Consensus       238 ~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~  317 (533)
                      +++.++.       .|++.+++++++      ++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|.....
T Consensus       126 ~v~~v~~-------~d~~~l~~~i~~------~tklV~l~~P~NPtG~v~d---l~~I~~la~~~gi~vIvD~a~a~~~~  189 (405)
T PRK08776        126 ALITADL-------TDPRSLADALAQ------SPKLVLIETPSNPLLRITD---LRFVIEAAHKVGALTVVDNTFLSPAL  189 (405)
T ss_pred             EEEEECC-------CCHHHHHHhcCc------CCeEEEEECCCCCCCccCC---HHHHHHHHHHcCCEEEEECCCccccc
Confidence            8877764       378999998876      7999999999999999976   89999999999999999999975211


Q ss_pred             cCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHH
Q 009517          318 VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASL  396 (533)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~  396 (533)
                           ..++ .    +   ..|   +++.|.+|.++|..+...|++++  .++++.+.+..... ...+.+++.+.++..
T Consensus       190 -----~~pl-~----~---gaD---ivv~S~tK~l~g~~~~~~G~vv~--~~~~l~~~l~~~~~~~g~~~s~~~a~l~~~  251 (405)
T PRK08776        190 -----QKPL-E----F---GAD---LVLHSTTKYINGHSDVVGGAVVA--RDAELHQQLVWWANALGLTGSPFDAFLTLR  251 (405)
T ss_pred             -----CCcc-c----c---cCC---EEEecCceeecCCCCceEEEEEe--CCHHHHHHHHHHHHhcCCCCCHHHHHHHHh
Confidence                 1111 1    1   234   78999999996544688999876  36778777765544 445678888877765


Q ss_pred             HcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Q 009517          397 VMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGIT  440 (533)
Q Consensus       397 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~  440 (533)
                      .+              ++++...++..++...+.+.|++.|.+.
T Consensus       252 gl--------------~tl~~r~~~~~~na~~la~~L~~~p~v~  281 (405)
T PRK08776        252 GL--------------RTLDARLRVHQENADAIAALLDGHAAVN  281 (405)
T ss_pred             hh--------------CcHHHHHHHHHHHHHHHHHHHHcCCCee
Confidence            55              3345566777888888999998876543

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=99.91  E-value=6.5e-22  Score=201.27  Aligned_cols=222  Identities=13%  Similarity=0.119  Sum_probs=167.2

Q ss_pred             ccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHH----HHh
Q 009517          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI----ALH  235 (533)
Q Consensus       160 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~----~~~  235 (533)
                      ...|+.+. ...|++++|++.+        .+++++++|+++|+..++..++ ++||+|+++.|+|......+    ...
T Consensus        47 Y~R~~npt-~~~Le~~lA~leg--------~e~ivvt~gg~~Ai~~~l~all-~~Gd~Il~~~~~y~~~~~~~~~~~~~~  116 (388)
T PRK08861         47 YTRSGNPN-RGLLEQTLSELES--------GKGAVVTNCGTSALNLWVSALL-GPDDLIVAPHDCYGGTYRLFNTRANKG  116 (388)
T ss_pred             ccCCCCch-HHHHHHHHHHHhC--------CCeEEEECCHHHHHHHHHHHHc-CCCCEEEEcCCchHHHHHHHHHHHhcC
Confidence            34455544 7889999999964        5799999999999999999998 89999999999998643332    234


Q ss_pred             CCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccc
Q 009517          236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN  315 (533)
Q Consensus       236 g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~  315 (533)
                      |.++..++       ..|++++++++++      ++++|++++|+||||.+++   +++|+++|+++|+++|+|++|...
T Consensus       117 gi~v~~vd-------~~d~e~l~~~i~~------~tklV~lesP~NPtG~v~d---l~~I~~la~~~gi~vIvDea~~~~  180 (388)
T PRK08861        117 DFKVQFVD-------QSDAAALDAALAK------KPKLILLETPSNPLVRVVD---IAELCQKAKAVGALVAVDNTFLTP  180 (388)
T ss_pred             CeEEEEEC-------CCCHHHHHHhcCc------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCcccc
Confidence            66776664       2488999998876      7999999999999999999   788999999999999999999764


Q ss_pred             cccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHH
Q 009517          316 VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILA  394 (533)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~  394 (533)
                      .+.  .+.    .    +   ..|   +++.|++|.++|..+...|++++  .++++.+.++.... .+...+++....+
T Consensus       181 ~~~--~pl----~----~---GaD---ivv~S~tK~l~G~~d~~gG~i~~--~~~~~~~~~~~~~~~~G~~~~p~~a~l~  242 (388)
T PRK08861        181 VLQ--KPL----E----L---GAD---FVIHSTTKYINGHSDVIGGVLIT--KTKEHAEELAWWGNCIGATGTPFDSYMT  242 (388)
T ss_pred             ccC--CCc----c----c---CCC---EEEeecceeccCCCcceeEEEEe--cHHHHHHHHHHHHhccCCCCChHHHHHH
Confidence            332  111    1    1   234   78999999996655688999876  25667777765554 4566678777776


Q ss_pred             HHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 009517          395 SLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGI  439 (533)
Q Consensus       395 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~  439 (533)
                      ..-|+.              +..+.++..++...+.+.|++.|.+
T Consensus       243 ~rgl~T--------------l~lR~~~~~~~a~~~a~~L~~~p~v  273 (388)
T PRK08861        243 LRGIRT--------------LGARMRVHEESAQQILAYLQTQSLV  273 (388)
T ss_pred             HhcCCC--------------HHHHHHHHHHHHHHHHHHHHhCCCe
Confidence            666642              3444455667777888888877554

>PRK07505 hypothetical protein; Provisional

Probab=99.91  E-value=1.1e-22  Score=210.38  Aligned_cols=322  Identities=15%  Similarity=0.106  Sum_probs=190.2

Q ss_pred             CHHHHHHHHHHHhcCC--CCCc--cccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc---C
Q 009517          141 SADSIERAWQILDQIP--GRAT--GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR---S  213 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~--~~~~--~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~---~  213 (533)
                      ++++++++.+++.+..  ....  ..+ ......+|++++++++    +  .   +.++++++++|...+++.+..   .
T Consensus        62 ~p~v~~A~~~~l~~~g~~~~~~~~~~~-~~~~~~~l~~~la~~~----~--~---~~~~~~sG~~a~~~ai~~~~~~~~~  131 (402)
T PRK07505         62 HPAIIEGAVDALKRTGSLHLSSSRTRV-RSQILKDLEEALSELF----G--A---SVLTFTSCSAAHLGILPLLASGHLT  131 (402)
T ss_pred             CHHHHHHHHHHHHHhCCCCCCccchhh-hhHHHHHHHHHHHHHh----C--C---CEEEECChHHHHHHHHHHHHhcccC
Confidence            6899999999987632  1000  011 1222455666666554    3  2   455555666888888876431   1


Q ss_pred             CC-CeEEEcCCcCcchHH---HHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCH
Q 009517          214 EN-DGILCPIPQYPLYSA---SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAE  289 (533)
Q Consensus       214 ~g-d~Vlv~~p~~~~~~~---~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~  289 (533)
                      +| ..|++.+..|++-..   .....+.+++.+|.       .|++++++++++      +++++++++|+||||.+.+ 
T Consensus       132 ~~~~~vi~~~~~~H~s~~~~~~~~~~~~~v~~~~~-------~d~~~l~~~~~~------~~~~~vl~~p~~~~G~~~~-  197 (402)
T PRK07505        132 GGVPPHMVFDKNAHASLNILKGICADETEVETIDH-------NDLDALEDICKT------NKTVAYVADGVYSMGGIAP-  197 (402)
T ss_pred             CCCCCEEEEchhhhHhHHhhhhhhhcCCeEEEeCC-------CCHHHHHHHHhc------CCCEEEEEecccccCCcCC-
Confidence            23 347777767665321   11223456666664       378999998865      5789999999999999999 


Q ss_pred             HHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCC
Q 009517          290 ENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFS  369 (533)
Q Consensus       290 ~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~  369 (533)
                        +++|.++|+++++++|+||+|....|+........    ..++...++ .+|++.||||++ |++|   ||+++  .+
T Consensus       198 --~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~----~~~~~~~~d-~~i~~~s~sK~~-~~~G---g~~~~--~~  264 (402)
T PRK07505        198 --VKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVR----SELDYRLNE-RTIIAASLGKAF-GASG---GVIML--GD  264 (402)
T ss_pred             --HHHHHHHHHHcCCEEEEECcccccCcCCCCCchHH----HHcCCCCCC-CeEEEEechhhh-hccC---eEEEe--CC
Confidence              78888999999999999999864334321111111    111100123 578899999998 6565   78764  27


Q ss_pred             HHHHHHHHHhhh-ccc--cCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCc
Q 009517          370 AEVREQIYKVAS-VNL--CSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEG  446 (533)
Q Consensus       370 ~~~~~~l~~~~~-~~~--~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~g  446 (533)
                      +++++.+..... .++  ++++++++++.+.++..         ..+++.++.+.++++.+.+...+...     ....+
T Consensus       265 ~~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~---------~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~g~~  330 (402)
T PRK07505        265 AEQIELILRYAGPLAFSQSLNVAALGAILASAEIH---------LSEELDQLQQKLQNNIALFDSLIPTE-----QSGSF  330 (402)
T ss_pred             HHHHHHHHHhCCCceeCCCCCHHHHHHHHHHHHHH---------hccCcHHHHHHHHHHHHHHHHHHHhc-----CCCCC
Confidence            788888876543 333  34456777766665310         00112223344444444333322111     12222


Q ss_pred             eeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHH
Q 009517          447 AMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       447 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l  524 (533)
                      .+..++.+..+.            ....+... |.++||.+.++..+....+.++|||++.  ++++++++++++|++++
T Consensus       331 ~~i~~~~~~~~~------------~~~~~~~~-l~~~Gi~v~~~~~p~~~~~~~~lRi~~~~~~t~eei~~~~~~l~~~l  397 (402)
T PRK07505        331 LPIRLIYIGDED------------TAIKAAKQ-LLDRGFYTSPVFFPVVAKGRAGLRIMFRASHTNDEIKRLCSLLKEIL  397 (402)
T ss_pred             CCEEEEEeCCHH------------HHHHHHHH-HHHCCCeEeeecCCCCCCCCceEEEecCccCCHHHHHHHHHHHHHHH
Confidence            222222111100            12334444 4578999999744432334458999997  79999999999999987


Q ss_pred             HH
Q 009517          525 KN  526 (533)
Q Consensus       525 ~~  526 (533)
                      ++
T Consensus       398 ~~  399 (402)
T PRK07505        398 DE  399 (402)
T ss_pred             Hh
Confidence            65

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=99.91  E-value=1.5e-21  Score=203.03  Aligned_cols=331  Identities=15%  Similarity=0.088  Sum_probs=205.8

Q ss_pred             CHHHHHHHHHHHhcCCC--CCccccC-CCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCe
Q 009517          141 SADSIERAWQILDQIPG--RATGAYS-HSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDG  217 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~--~~~~~Y~-~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~  217 (533)
                      |+.+++++...+.....  .....|. ...-...+.+...+.+.+.+|  .+..+|++++| ++++..++..++ ++||+
T Consensus        38 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g--~~~~~i~~~sg-t~al~~~l~~l~-~~gd~  113 (416)
T PRK00011         38 SPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFG--AEYANVQPHSG-SQANAAVYFALL-KPGDT  113 (416)
T ss_pred             CHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhC--CCceeeecCCc-hHHHHHHHHHhc-CCCCE
Confidence            78888888666532211  0011111 111122232322334444455  34456766654 679999999998 89999


Q ss_pred             EEEcCCcCcchHH-----HHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHH
Q 009517          218 ILCPIPQYPLYSA-----SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQ  292 (533)
Q Consensus       218 Vlv~~p~~~~~~~-----~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l  292 (533)
                      |+++.|+|..+..     .+...|++++.++++.+ ++.+|++++++++++.     ++++|++++++||  ...+   +
T Consensus       114 Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~~l~~~i~~~-----~~k~v~~~~~~~~--~~~~---~  182 (416)
T PRK00011        114 ILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEE-TGLIDYDEVEKLALEH-----KPKLIIAGASAYS--RPID---F  182 (416)
T ss_pred             EEEeccccCCccccccccccccceeeEeecCcCcc-cCCcCHHHHHHHHHhc-----CCCEEEECCCcCC--CccC---H
Confidence            9999999986532     12334678888887643 5789999999999753     6888888766654  4444   8


Q ss_pred             HHHHHHHHHcCCEEEEccccc-cccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHH
Q 009517          293 RAIVDFCKKEGLVLLADEVYQ-ENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAE  371 (533)
Q Consensus       293 ~~i~~l~~~~~~~lI~De~y~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~  371 (533)
                      ++|.++|+++|+++|+|++|. ++.+.+..+ ..       +   . . ..+++.||||++   +|.|+||+++  .+++
T Consensus       183 ~~I~~la~~~~~~livD~a~~~g~~~~g~~~-~~-------~---~-~-~di~~~S~~K~l---~g~~gg~i~~--~~~~  244 (416)
T PRK00011        183 KRFREIADEVGAYLMVDMAHIAGLVAAGVHP-SP-------V---P-H-ADVVTTTTHKTL---RGPRGGLILT--NDEE  244 (416)
T ss_pred             HHHHHHHHHcCCEEEEECcchhcccccCccC-CC-------C---C-C-CcEEEecCCcCC---CCCCceEEEe--CCHH
Confidence            999999999999999999974 333322111 11       1   1 1 126799999977   4899999998  2368


Q ss_pred             HHHHHHHhhhc-cccCC-hHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEec-CCcee
Q 009517          372 VREQIYKVASV-NLCSN-ISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNK-AEGAM  448 (533)
Q Consensus       372 ~~~~l~~~~~~-~~~~~-~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~gg~  448 (533)
                      +++.+...... ..+.+ ...+.++..++.         ....+.++++.++++++++++++.|+++ |+++.. +..+.
T Consensus       245 ~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~---------~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~  314 (416)
T PRK00011        245 LAKKINSAVFPGIQGGPLMHVIAAKAVAFK---------EALEPEFKEYAQQVVKNAKALAEALAER-GFRVVSGGTDNH  314 (416)
T ss_pred             HHHHHHHHhCccccCCccHHHHHHHHHHHH---------HHHhhhHHHHHHHHHHHHHHHHHHHHhC-CCeeeecCCCCe
Confidence            88888765532 22222 222222222221         0111234667788899999999999997 887654 12236


Q ss_pred             EEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCC-CC--CCCCCCceEEEEe------cCCcCcHHHHHHH
Q 009517          449 YLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGS-GF--GQVPGTWHFRCTI------LPQEDKIPAIVTR  519 (533)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~-~f--~~~~g~~~iRis~------~~~~e~i~~~~~~  519 (533)
                      ++|+.++..          ++ +... +.+.|+++||.+..+. .+  ........+|++.      +.++++++++++.
T Consensus       315 ~~~i~~~~~----------~~-~~~~-~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~~di~~l~~~  382 (416)
T PRK00011        315 LVLVDLRSK----------GL-TGKE-AEAALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAEMKEIAEL  382 (416)
T ss_pred             EEEEeCccc----------CC-CHHH-HHHHHHHcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCHHHHHHHHHH
Confidence            777655311          01 1223 3456778999997432 12  1111223689965      3568899999999


Q ss_pred             HHHHHHH
Q 009517          520 LTDFHKN  526 (533)
Q Consensus       520 l~~~l~~  526 (533)
                      |++++..
T Consensus       383 l~~~~~~  389 (416)
T PRK00011        383 IADVLDN  389 (416)
T ss_pred             HHHHHhc
Confidence            9988664

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=99.91  E-value=1.3e-21  Score=200.76  Aligned_cols=317  Identities=12%  Similarity=0.111  Sum_probs=204.9

Q ss_pred             HHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc-----CCCC
Q 009517          142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-----SEND  216 (533)
Q Consensus       142 ~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-----~~gd  216 (533)
                      +.+.+++...+....+ ....|+   |..++.+.+.+.+.+.+|  ++.+++++++|+++++..++.++..     .+||
T Consensus        34 ~~~~~a~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~la~~~g--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~  107 (373)
T TIGR03812        34 PIAVKAYDMFIETNLG-DPGLFP---GTKKIEEEVVGSLGNLLH--LPDAYGYIVSGGTEANIQAVRAAKNLAREEKRTP  107 (373)
T ss_pred             HHHHHHHHHHhhcCCC-CcccCc---cHHHHHHHHHHHHHHHhC--CCCCCeEEeccHHHHHHHHHHHHHHHHhccCCCc
Confidence            4445666555443222 122232   233333444444444444  5567889999999999888776541     3678


Q ss_pred             eEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHH
Q 009517          217 GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIV  296 (533)
Q Consensus       217 ~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~  296 (533)
                      +|++++++|..+...++..|++++.++.+.  ++.+|++++++++++      ++.++++++|+||||.+.+   +++|.
T Consensus       108 ~vl~~~~~h~~~~~~~~~~G~~~~~v~~~~--~~~~d~~~l~~~l~~------~~~~vv~~~~~~~tG~~~~---~~~i~  176 (373)
T TIGR03812       108 NIIVPESAHFSFEKAAEMLGLELRYAPLDE--DYTVDVKDVEDLIDD------NTIGIVGIAGTTELGQIDD---IEELS  176 (373)
T ss_pred             EEEECCcchHHHHHHHHHcCCeEEEEeeCC--CCCcCHHHHHHHHhh------CcEEEEEECCCCCCCccCC---HHHHH
Confidence            999999999999999999999999999864  568999999999977      5655666668999999987   88999


Q ss_pred             HHHHHcCCEEEEccccccccccC-----CCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHH
Q 009517          297 DFCKKEGLVLLADEVYQENVYVP-----EKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAE  371 (533)
Q Consensus       297 ~l~~~~~~~lI~De~y~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~  371 (533)
                      ++|+++|+++|+|++|.++...-     ......+.         ..... .+..|.+| + ++++.|+|+++.  .+++
T Consensus       177 ~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~---------~~~~d-~~~~s~~K-~-~~~~~~~G~~~~--~~~~  242 (373)
T TIGR03812       177 KIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFS---------LPGVQ-SITIDPHK-M-GLSPIPAGGILF--RSKS  242 (373)
T ss_pred             HHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCcccc---------CCCCC-EEEECccc-c-CCCcCCceEEEE--eCHH
Confidence            99999999999999998643210     00000000         01111 33457779 5 556788987664  2777


Q ss_pred             HHHHHHHhhhc-c--------ccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce-E
Q 009517          372 VREQIYKVASV-N--------LCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGIT-C  441 (533)
Q Consensus       372 ~~~~l~~~~~~-~--------~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~  441 (533)
                      +++.+...... .        ...+.....++..+|+..         ..+.++++.+++.++++++++.|+++ |+. +
T Consensus       243 ~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l---------~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~  312 (373)
T TIGR03812       243 YLKYLSVDAPYLTVKKQATITGTRSGASAAATYAVIKYL---------GREGYRKIVAECMENTRYLVEELKKI-GFEPV  312 (373)
T ss_pred             HHhhhcccCcccCCCCCcceEeechhHHHHHHHHHHHHh---------CHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEE
Confidence            77766321110 0        122334444444554311         01335667788899999999999998 554 4


Q ss_pred             ecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHH
Q 009517          442 NKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTR  519 (533)
Q Consensus       442 ~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~  519 (533)
                      ..+..++. .+.++  .             ...+ .+.|.++||.+.++.      +..+||+++.  .+++++++++++
T Consensus       313 ~~~~~~~v-~~~~~--~-------------~~~v-~~~L~~~gi~v~~~~------~~~~iRis~~~~~t~edid~l~~~  369 (373)
T TIGR03812       313 IEPVLNIV-AFEVD--D-------------PEEV-RKKLRDRGWYVSVTR------CPKALRIVVMPHVTREHIEEFLED  369 (373)
T ss_pred             cCCCceEE-EEEeC--C-------------HHHH-HHHHHHCCceeccCC------CCCEEEEEEECCCCHHHHHHHHHH
Confidence            45554433 32222  1             1233 345567799998642      2338999996  788999999999


Q ss_pred             HHH
Q 009517          520 LTD  522 (533)
Q Consensus       520 l~~  522 (533)
                      |++
T Consensus       370 L~~  372 (373)
T TIGR03812       370 LKE  372 (373)
T ss_pred             Hhh
Confidence            875

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>PRK07582 cystathionine gamma-lyase; Validated

Probab=99.91  E-value=6.1e-22  Score=201.31  Aligned_cols=285  Identities=15%  Similarity=0.145  Sum_probs=194.8

Q ss_pred             ccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHH----HHh
Q 009517          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI----ALH  235 (533)
Q Consensus       160 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~----~~~  235 (533)
                      ...|+. ....+|++++|++.         .++.++++++++|+..++..++ ++||+|+++.|+|.++...+    ...
T Consensus        45 y~ry~~-p~~~~Le~~lA~l~---------~~~~v~~~sG~~Ai~~~l~all-~~Gd~Vl~~~~~y~~~~~~~~~~l~~~  113 (366)
T PRK07582         45 YGRASN-PTWRALEAALGELE---------GAEALVFPSGMAAITAVLRALL-RPGDTVVVPADGYYQVRALAREYLAPL  113 (366)
T ss_pred             eECCCC-ccHHHHHHHHHHHc---------CCCEEEECCHHHHHHHHHHHhc-CCCCEEEEeCCCcHhHHHHHHHHHhcC
Confidence            344554 44899999999985         2345566666789999998887 89999999999999887654    346


Q ss_pred             CCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccc
Q 009517          236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN  315 (533)
Q Consensus       236 g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~  315 (533)
                      |++++.++.++.      .+    .+.+      ++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|...
T Consensus       114 G~~v~~v~~~~~------~~----~~~~------~t~lV~le~p~NPtg~v~d---i~~I~~~a~~~g~~lvVD~t~~~~  174 (366)
T PRK07582        114 GVTVREAPTAGM------AE----AALA------GADLVLAETPSNPGLDVCD---LAALAAAAHAAGALLVVDNTTATP  174 (366)
T ss_pred             eEEEEEECCCCh------HH----Hhcc------CceEEEEECCCCCCCCccC---HHHHHHHHHHcCCEEEEECCCCCc
Confidence            899998886532      11    2222      7899999999999998876   999999999999999999999631


Q ss_pred             cccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHH
Q 009517          316 VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILA  394 (533)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~  394 (533)
                        .+..+   +     ++   ..|   +++.|+||.+.|.+|+|+||+++  .++++++.+..... ...+++++.+..+
T Consensus       175 --~~~~p---~-----~~---g~D---ivv~S~sK~l~G~~g~~~G~v~~--~~~~l~~~l~~~~~~~g~~~~~~~a~l~  236 (366)
T PRK07582        175 --LGQRP---L-----EL---GAD---LVVASDTKALTGHSDLLLGYVAG--RDPELMAAVERWRLLAGAIPGPFEAWLA  236 (366)
T ss_pred             --cccCc---h-----hc---CCc---EEEecccccccCCCCeeEEEEEc--CcHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence              12211   1     11   234   77899999997777899999986  25788888876654 4456677777777


Q ss_pred             HHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEec-------C-----------CceeEEecccCC
Q 009517          395 SLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNK-------A-----------EGAMYLFPRIQL  456 (533)
Q Consensus       395 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-------~-----------~gg~~~~~~~~~  456 (533)
                      ...|+.              +....++..++...+.+.|++.|.+..+.       |           .||++.|- +..
T Consensus       237 ~r~l~t--------------l~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~-~~~  301 (366)
T PRK07582        237 HRSLGT--------------LGLRFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFE-LAD  301 (366)
T ss_pred             Hhcccc--------------HHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEE-eCC
Confidence            666642              33344566678888999998876654321       2           46666552 321


Q ss_pred             CHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCC-------------CCCCceEEEEecCCcCcHHHHHHHHHHH
Q 009517          457 PEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ-------------VPGTWHFRCTILPQEDKIPAIVTRLTDF  523 (533)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~-------------~~g~~~iRis~~~~~e~i~~~~~~l~~~  523 (533)
                                      ...+.+.++..++.. .+..+|.             .-..+.||+|++++  +.+.+++.|+++
T Consensus       302 ----------------~~~~~~~~~~l~~~~-~~~s~G~~~sl~~~~~~~~~~~~~~liR~svGlE--~~~dli~dl~~a  362 (366)
T PRK07582        302 ----------------AAAAERFVAASRLVV-AATSFGGVHTSADRRARWGDAVPEGFVRLSCGIE--DTDDLVADLERA  362 (366)
T ss_pred             ----------------HHHHHHHHHhCCcce-ecccCCCccchhhhHHHcCCCCCCCeEEEEeccC--CHHHHHHHHHHH
Confidence                            111334555555433 2222321             01124899999963  457778888887


Q ss_pred             HHH
Q 009517          524 HKN  526 (533)
Q Consensus       524 l~~  526 (533)
                      ++.
T Consensus       363 l~~  365 (366)
T PRK07582        363 LDA  365 (366)
T ss_pred             Hhh
Confidence            764

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=99.91  E-value=6e-22  Score=204.47  Aligned_cols=328  Identities=14%  Similarity=0.086  Sum_probs=213.0

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC---CC-C
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS---EN-D  216 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~---~g-d  216 (533)
                      ++.+++++.+++.+...  ...|...    +.+..+|+.+.+...  ...+.++++++|+||++.+++..+..   .| .
T Consensus        93 hp~v~~Av~~ql~~l~~--~~~~~~~----~~~~~lAe~L~~~~p--~~~~~v~f~~SGsEA~e~AlklAr~~t~~~gr~  164 (442)
T TIGR03372        93 NPNVIAAVENQLAKQPL--HSQELLD----PLRALLAKTLAALTP--GKLKYSFFCNSGTESVEAALKLAKAYQSPRGKF  164 (442)
T ss_pred             CHHHHHHHHHHHHhCCC--cccccCC----HHHHHHHHHHHHhCC--CCcCEEEEeCCchHHHHHHHHHHHHHHhhcCCc
Confidence            68899999999987432  2223322    334445555544322  12367999999999999999987622   24 6


Q ss_pred             eEEEcCCcCcchHHHHHHhCCeEE----EEecCCCCC--CCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccC-CCH
Q 009517          217 GILCPIPQYPLYSASIALHGGTLV----PYYLDEATG--WGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV-LAE  289 (533)
Q Consensus       217 ~Vlv~~p~~~~~~~~~~~~g~~~~----~v~~~~~~~--~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~-~s~  289 (533)
                      +|+....+|++.............    ..|+.+.-.  --.|.+.+++.++.....+.++.+||++..+...|+. +++
T Consensus       165 ~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~d~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~  244 (442)
T TIGR03372       165 TFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFGDIEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPPE  244 (442)
T ss_pred             EEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCCCCHHHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCH
Confidence            799999999997655444322110    111111000  0126788888886533334468888888777777874 467


Q ss_pred             HHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCC-CeeEEEEEecC
Q 009517          290 ENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGF  368 (533)
Q Consensus       290 ~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G-~riG~v~~~~~  368 (533)
                      +.+++|.++|++||+++|+||++++|...|.  +..+     +..++.||     +.+|+|.++  .| +++|.+++   
T Consensus       245 ~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~--~~a~-----e~~gv~PD-----ivt~gK~lg--~G~~Pigavv~---  307 (442)
T TIGR03372       245 GYLPAVRALCDEFGALLILDEVQTGMGRTGK--MFAC-----EHEGVQPD-----ILCLAKALG--GGVMPIGATIA---  307 (442)
T ss_pred             HHHHHHHHHHHHcCCEEEEeecccCCCcccc--chhh-----hhcCCCCC-----eeeehhhhc--CCcccceEEEe---
Confidence            8899999999999999999999999765553  2222     11223677     456999994  48 69999998   


Q ss_pred             CHHHHHHHHH---hhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----C-Cce
Q 009517          369 SAEVREQIYK---VASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL----E-GIT  440 (533)
Q Consensus       369 ~~~~~~~l~~---~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~-g~~  440 (533)
                      .+++++.+..   ....|++.++++++++.+.|+           ..++ +.+.++.+++.+++++.|+++    | .+.
T Consensus       308 ~~~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~-----------~i~~-~~l~~~~~~~G~~l~~~L~~l~~~~~~~i~  375 (442)
T TIGR03372       308 TEAVFSVLFDNPFLHTTTFGGNPLACAAALATIN-----------ELLE-KNLPAQAAIKGDFLLDGFQQLAAEYPDLII  375 (442)
T ss_pred             cHHHHHhhhccCccccCCCCCCHHHHHHHHHHHH-----------HHHh-ccHHHHHHHHHHHHHHHHHHHHHhCCCceE
Confidence            8899888732   123678889999999988884           2221 234555666667777777654    3 345


Q ss_pred             EecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHH
Q 009517          441 CNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVT  518 (533)
Q Consensus       441 ~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~  518 (533)
                      -++..|.|+.+ .+..+.            ....++ ..|.++||++.+...     +.+.+||.+.  +++++++++++
T Consensus       376 ~vRG~Gl~~gi-el~~~~------------~~~~i~-~~l~~~Gvl~~~~~~-----~~~~lr~~Ppl~~t~~~id~~~~  436 (442)
T TIGR03372       376 EARGKGLLMAI-EFRDNE------------IGYAFA-KELFQQNILVAGTLN-----NAKSIRIEPPLTITIEQCALVIK  436 (442)
T ss_pred             EEecceEEEEE-EeCChH------------HHHHHH-HHHHHCCcEEeecCC-----CCCEEEEECCcccCHHHHHHHHH
Confidence            56677665543 232111            012334 445568999975311     1238999985  89999999999


Q ss_pred             HHHHHH
Q 009517          519 RLTDFH  524 (533)
Q Consensus       519 ~l~~~l  524 (533)
                      +|++++
T Consensus       437 ~l~~~~  442 (442)
T TIGR03372       437 AAKDAL  442 (442)
T ss_pred             HHHHhC
Confidence            998763

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PRK07503 methionine gamma-lyase; Provisional

Probab=99.91  E-value=9.3e-22  Score=202.27  Aligned_cols=213  Identities=13%  Similarity=0.154  Sum_probs=159.1

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchH----HHHHHhCCeEEEEec
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS----ASIALHGGTLVPYYL  244 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~----~~~~~~g~~~~~v~~  244 (533)
                      ..+|+++++++.+        .+..+++++|+.|+..++..++ .+||+|+++.|+|....    ..+...|+++..++.
T Consensus        67 ~~~le~~lA~l~g--------~~~~i~~~sG~~Al~~~l~~ll-~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~vd~  137 (403)
T PRK07503         67 LALLEQRMASLEG--------GEAAVALASGMGAITATLWTLL-RPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDL  137 (403)
T ss_pred             HHHHHHHHHHHhC--------CCcEEEEcCHHHHHHHHHHHHc-CCCCEEEEccCccchHHHHHHHHHhhCCEEEEEeCC
Confidence            7889999999875        2345677788899999999887 89999999999887533    345567988888875


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcc
Q 009517          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (533)
Q Consensus       245 ~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~  324 (533)
                      +       |++.+++++++      ++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|..... + .+  
T Consensus       138 ~-------d~~~l~~~i~~------~tklV~le~p~NPtG~~~d---i~~I~~la~~~gi~lIvD~a~a~~~~-~-~~--  197 (403)
T PRK07503        138 T-------DPAALKAAISD------KTRMVYFETPANPNMRLVD---IAAVAEIAHGAGAKVVVDNTYCTPYL-Q-RP--  197 (403)
T ss_pred             C-------CHHHHHHhcCc------cCcEEEEeCCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCccccc-C-Cc--
Confidence            3       68999999876      7999999999999999988   89999999999999999999986432 1 11  


Q ss_pred             cHHHHHhhcCCCCCCceEEEEecCCccCCCCCC-CeeEEEEEecCCHHHHHHHHHh--hh-ccccCChHHHHHHHHHcCC
Q 009517          325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFSAEVREQIYKV--AS-VNLCSNISGQILASLVMSP  400 (533)
Q Consensus       325 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G-~riG~v~~~~~~~~~~~~l~~~--~~-~~~~~~~~~q~a~~~~L~~  400 (533)
                       + .    +   ..|   |++.|+||.+ +.+| .+.||++.   ++++++.++..  .. ...+.+++.++.+...|+ 
T Consensus       198 -l-~----~---g~D---i~v~S~tK~l-~g~gd~~gG~v~~---~~~l~~~l~~~~~~~~~g~~~s~~~a~l~l~~L~-  260 (403)
T PRK07503        198 -L-E----L---GAD---LVVHSATKYL-GGHGDITAGLVVG---GKALADRIRLEGLKDMTGAVMSPFDAFLLMRGLK-  260 (403)
T ss_pred             -h-h----h---CCC---EEEccccccc-cCCCceeEEEEEc---CHHHHHHHHhhhHHhCcCCCCCHHHHHHHHcCcc-
Confidence             1 1    1   234   8899999999 5455 78899886   88888887643  32 345667777766655543 


Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Q 009517          401 PKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGIT  440 (533)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~  440 (533)
                                   .+....++..++...+.+.|++.|.+.
T Consensus       261 -------------tl~~r~~~~~~na~~~a~~L~~~p~v~  287 (403)
T PRK07503        261 -------------TLALRMDRHCASAQAVAEWLARHPAVE  287 (403)
T ss_pred             -------------hHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence                         233334444566777888888776554

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=99.91  E-value=6.9e-22  Score=202.87  Aligned_cols=221  Identities=14%  Similarity=0.145  Sum_probs=158.7

Q ss_pred             cccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHH----HHhC
Q 009517          161 GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI----ALHG  236 (533)
Q Consensus       161 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~----~~~g  236 (533)
                      ..|+.+. ..+|++++|++.+        .+..+++++|+.++..++..++ ++||+|+++.|.|..+...+    ...|
T Consensus        60 ~r~~~p~-~~~Le~~lA~l~G--------~~~~~~~~sG~~Ai~~~l~~~l-~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G  129 (398)
T PRK07504         60 SRYSNPT-VDMFEKRMCALEG--------AEDARATASGMAAVTAAILCQV-KAGDHVVAARALFGSCRYVVETLLPRYG  129 (398)
T ss_pred             ecCCCch-HHHHHHHHHHHhC--------CCeeeEecCHHHHHHHHHHHHh-CCCCEEEEcCCchhHHHHHHHHHHhhcC
Confidence            3454444 7899999999874        2334557788889988888777 79999999999999765443    3568


Q ss_pred             CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEcccccccc
Q 009517          237 GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENV  316 (533)
Q Consensus       237 ~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~  316 (533)
                      ++++.++       .+|++.+++++++      ++++|++++|+||||.+++   +++|.++|+++|+++|+|++|....
T Consensus       130 ~~v~~vd-------~~d~e~l~~ai~~------~tklV~lesp~NptG~v~d---l~~I~~la~~~gi~lvvD~a~a~~~  193 (398)
T PRK07504        130 IESTLVD-------GLDLDNWEKAVRP------NTKVFFLESPTNPTLEVID---IAAVAKIANQAGAKLVVDNVFATPL  193 (398)
T ss_pred             eEEEEEC-------CCCHHHHHHhcCc------CceEEEEECCCCCCcEecC---HHHHHHHHHHcCCEEEEECCccccc
Confidence            8888774       3689999999976      7999999999999999998   8899999999999999999998644


Q ss_pred             ccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHH-HHHHhhh-ccccCChHHHHHH
Q 009517          317 YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVRE-QIYKVAS-VNLCSNISGQILA  394 (533)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~-~l~~~~~-~~~~~~~~~q~a~  394 (533)
                      +.  .+   + .    +   ..|   +++.|+||.+ +.+|+++|++++  .+++++. .+..... .....+++.++++
T Consensus       194 ~~--~~---~-~----~---gaD---ivv~S~sK~l-~g~g~~~GG~vv--~~~~~i~~~~~~~~~~~g~~~s~~~A~~~  254 (398)
T PRK07504        194 FQ--KP---L-E----L---GAH---IVVYSATKHI-DGQGRCLGGVVL--SDKAWIEEHLQDYFRHTGPSLSPFNAWTL  254 (398)
T ss_pred             cC--Cc---h-h----h---CCC---EEEeeccccc-cCCccceEEEEE--eCcHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            31  11   1 1    1   234   7899999999 668999964443  1566554 3443322 3345566666655


Q ss_pred             HHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Q 009517          395 SLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGIT  440 (533)
Q Consensus       395 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~  440 (533)
                      ...|+              .+....++..++...+.+.|++.|++.
T Consensus       255 l~~L~--------------tl~~R~~~~~~na~~la~~L~~~p~v~  286 (398)
T PRK07504        255 LKGLE--------------TLPVRVRQQTESAAAIADFLAGHPKVA  286 (398)
T ss_pred             Hhccc--------------hHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence            55553              234444555677778888888776643

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=99.91  E-value=1e-21  Score=204.10  Aligned_cols=367  Identities=12%  Similarity=0.057  Sum_probs=238.2

Q ss_pred             hHHHHHH-HHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhc
Q 009517           76 IVSIAQR-LQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQ  154 (533)
Q Consensus        76 ~~~~~~~-~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~  154 (533)
                      ++.++++ ...++.||++      ++|+..|....                      ..+++    ++++++++.+++.+
T Consensus        66 ~~~~~~G~~~l~D~dG~~------ylD~~~g~~~~----------------------~lGH~----~p~v~~Ai~~ql~~  113 (459)
T PRK11522         66 VEWQAGGLNTLVDTQGQE------FIDCLGGFGIF----------------------NVGHR----NPVVVSAVQNQLAK  113 (459)
T ss_pred             eEEeccCeEEEEECCCCE------EEECCcCHHhh----------------------hcCCC----CHHHHHHHHHHHhh
Confidence            5566666 6667777777      77776553221                      11122    68999999999987


Q ss_pred             CCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCC---C-CeEEEcCCcCcchHH
Q 009517          155 IPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSE---N-DGILCPIPQYPLYSA  230 (533)
Q Consensus       155 ~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~---g-d~Vlv~~p~~~~~~~  230 (533)
                      ...  ...|..    .+.+..+|+.+.....  ...++++++++|+||++.+++..+...   | .+|+....+|++...
T Consensus       114 l~~--~~~~~~----~~~~~~lae~L~~~~p--~~~~~v~f~~SGsEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~  185 (459)
T PRK11522        114 QPL--HSQELL----DPLRAMLAKTLAALTP--GKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSL  185 (459)
T ss_pred             Ccc--cccccC----CHHHHHHHHHHHHhCC--CCCCEEEEeCCchHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcH
Confidence            432  222222    3344445555544322  223689999999999999999876322   2 468889999999765


Q ss_pred             HHHHhCC-eEEE---EecCCCCCC--CCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCcc-CCCHHHHHHHHHHHHHcC
Q 009517          231 SIALHGG-TLVP---YYLDEATGW--GLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ-VLAEENQRAIVDFCKKEG  303 (533)
Q Consensus       231 ~~~~~g~-~~~~---v~~~~~~~~--~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~-~~s~~~l~~i~~l~~~~~  303 (533)
                      ....... ....   .|..+.-.+  -.|.+++++.++.....+.++.+||++..+.-.|. .+|++.++++.++|++||
T Consensus       186 ~~ls~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g  265 (459)
T PRK11522        186 GALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFG  265 (459)
T ss_pred             HHhhhcCCcccccCCCCCCCCCcccCCCCHHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcC
Confidence            5443322 1111   111110000  12788888888654333446778888877777787 457778999999999999


Q ss_pred             CEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCC-CeeEEEEEecCCHHHHHHHHH--h-
Q 009517          304 LVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFSAEVREQIYK--V-  379 (533)
Q Consensus       304 ~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G-~riG~v~~~~~~~~~~~~l~~--~-  379 (533)
                      +++|+||++++|...|.  ...     .+..++.||     +.+|+|.++  .| +++|.+++   .+++++.+..  . 
T Consensus       266 ~llI~DEV~tG~GRtG~--~~a-----~e~~gv~PD-----ivt~gK~lg--gG~~Pigav~~---~~~i~~~~~~~~~~  328 (459)
T PRK11522        266 ALLILDEVQTGMGRTGK--MFA-----CEHENVQPD-----ILCLAKALG--GGVMPIGATIA---TEEVFSVLFDNPFL  328 (459)
T ss_pred             CEEEeccceecCCccch--hhh-----hhccCCCCC-----EEEechhhh--CCCccceeEEE---cHHHHHHhccCCcc
Confidence            99999999999755553  211     222233677     458999994  47 69999998   8888887642  1 


Q ss_pred             hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----C-CceEecCCceeEEeccc
Q 009517          380 ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL----E-GITCNKAEGAMYLFPRI  454 (533)
Q Consensus       380 ~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~-g~~~~~~~gg~~~~~~~  454 (533)
                      ...|++.++++++++.+.|+.           .++ +.+.++.+++.++|++.|+++    | .+.-++..|.|+.+ .+
T Consensus       329 ~~~T~~gnp~~~Aaala~L~~-----------i~~-~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~VrG~Gl~~gi-el  395 (459)
T PRK11522        329 HTTTFGGNPLACAAALATINV-----------LLE-QNLPAQAEQKGDYLLDGFRQLAREYPDLVQEARGKGMLMAI-EF  395 (459)
T ss_pred             cCCCCCCCHHHHHHHHHHHHH-----------Hhc-chHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEeceeEEEE-Ee
Confidence            236788899999999888852           221 345667777777888877764    3 23445666655432 23


Q ss_pred             CCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHHHHHHHH
Q 009517          455 QLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFHKNFMDK  530 (533)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~~~~~  530 (533)
                      ..+.            ....++ ..|.++||++.+..     .+.+.+||.+.  +++++|++++++|.++++++.+.
T Consensus       396 ~~~~------------~~~~i~-~~l~~~Gvl~~~~~-----~~~~~lr~~Ppl~~t~~~id~~l~~l~~~l~~~~~~  455 (459)
T PRK11522        396 VDNE------------IGYNFA-SEMFRQRVLVAGTL-----NNAKTIRIEPPLTLTIEQCEQVLKAARKALAAMRVS  455 (459)
T ss_pred             cCch------------HHHHHH-HHHHHCCeEEEecC-----CCCCEEEEECCccCCHHHHHHHHHHHHHHHHHHHHh
Confidence            2111            012333 44556899997632     12348999985  89999999999999999887654

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=99.91  E-value=9.5e-22  Score=206.30  Aligned_cols=371  Identities=12%  Similarity=0.046  Sum_probs=233.7

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      ++.++++...++.||++      +||+..|....                      ..+++    ++++++++.+++.+.
T Consensus        74 ~i~~~~G~~l~D~dG~~------ylD~~sg~~~~----------------------~lGh~----hp~v~~Av~~ql~~~  121 (504)
T PLN02760         74 VIEKSEGSYVYDINGKK------YLDALAGLWCT----------------------ALGGS----EPRLVAAATEQLNKL  121 (504)
T ss_pred             eEEeeeeeEEEECCCCE------EEEcCcCHHhc----------------------ccCCC----CHHHHHHHHHHHhhc
Confidence            56677777777777777      88887664221                      11111    689999999999873


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc------CCC-CeEEEcCCcCcch
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR------SEN-DGILCPIPQYPLY  228 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~------~~g-d~Vlv~~p~~~~~  228 (533)
                      ..  ..  .-..+..+....+++.+.+.+. +.+.+.++++++|++|++.+++.++.      .++ .+|+..+.+|++.
T Consensus       122 ~~--~~--~~~~~~~~~~~~lae~L~~~~~-~~~~~~v~f~~SGsEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~  196 (504)
T PLN02760        122 PF--YH--SFWNRTTKPSLDLAKELLEMFT-ARKMGKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGS  196 (504)
T ss_pred             cc--ee--cccccCcHHHHHHHHHHHhhcC-CCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCC
Confidence            21  11  1111233445556666554321 12235799999999999999998741      133 6799999999987


Q ss_pred             HHHHHH-hCCe------------EEEEecCCCCCCC-----------CCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCc
Q 009517          229 SASIAL-HGGT------------LVPYYLDEATGWG-----------LETSEVKKQLEAAKAKGITVRALVVINPGNPTG  284 (533)
Q Consensus       229 ~~~~~~-~g~~------------~~~v~~~~~~~~~-----------ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG  284 (533)
                      ...... .|..            +..++......+.           ...+++++.+...  ...++.+||++..+.-.|
T Consensus       197 t~~a~slsg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~iAAvI~EPv~g~gG  274 (504)
T PLN02760        197 TLISASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPGETEEEFSTRLADNLENLILKE--GPETIAAFIAEPVMGAGG  274 (504)
T ss_pred             hHhhhhccCChhhccCCCCCCCCcEEeCCCcccccCCCCCcHHHHHHHHHHHHHHHHHhc--CCCceEEEEECCccCCCC
Confidence            543322 2221            1111111000000           0124466666431  112577887776666677


Q ss_pred             c-CCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCC-CeeEE
Q 009517          285 Q-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG-KRGGY  362 (533)
Q Consensus       285 ~-~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G-~riG~  362 (533)
                      . .++++.+++|.++|++||+++|+||++++|...|.  ...     .+..++.||     +.+|+|.++  .| +++|.
T Consensus       275 ~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~--~~a-----~e~~gv~PD-----ivtlgK~lg--gG~~PigA  340 (504)
T PLN02760        275 VIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGT--MFG-----CDKYNIKPD-----LVSLAKALS--SAYMPIGA  340 (504)
T ss_pred             CcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccch--hhH-----HHhcCCCCc-----EEEeccccc--CCccccce
Confidence            6 45778899999999999999999999999866553  221     222233688     678999994  36 59999


Q ss_pred             EEEecCCHHHHHHHHH--------hhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009517          363 MEVTGFSAEVREQIYK--------VASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFN  434 (533)
Q Consensus       363 v~~~~~~~~~~~~l~~--------~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  434 (533)
                      +++   ++++++.+..        ....|++.++++++++.+.|+.           .++ +.+.++.+++.++|++.|+
T Consensus       341 v~~---~~~i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~-----------i~~-~~l~~~~~~~g~~l~~~L~  405 (504)
T PLN02760        341 VLV---SPEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKI-----------YKE-RNIPEHVNKIAPRFQDGIK  405 (504)
T ss_pred             Eee---cHHHHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHHH-----------HHh-CCHHHHHHHHHHHHHHHHH
Confidence            988   8999988753        1336788999999999988841           221 2456666777777777776


Q ss_pred             cC---CCceEecCCceeEEecccCCCHHHHHHHHhcCCCC----hHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec
Q 009517          435 SL---EGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVP----DAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL  507 (533)
Q Consensus       435 ~~---~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~  507 (533)
                      ++   +.+..++..|.|+.+ .+..+...     ......    ...++ +.+.++||++.++       + +.+||++.
T Consensus       406 ~l~~~~~v~~vrG~Gl~~gi-e~~~~~~~-----~~~~~~~~~~~~~i~-~~~~~~Gvl~~~~-------g-~~lrl~Pp  470 (504)
T PLN02760        406 AFSGSPIIGEIRGTGLILGT-EFVDNKSP-----NDPFPAEWGVGAYFG-AECKKRGMLVRVA-------G-DNIMMSPP  470 (504)
T ss_pred             HHhcCCCeeeEEeCceEEEE-EEecCCcc-----cccccchhHHHHHHH-HHHHhCCcEEEec-------C-CEEEEECC
Confidence            54   334556777766553 22211000     000000    12233 4456789999862       1 26899975


Q ss_pred             --CCcCcHHHHHHHHHHHHHHHHH
Q 009517          508 --PQEDKIPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       508 --~~~e~i~~~~~~l~~~l~~~~~  529 (533)
                        +++++|++++++++++++++.+
T Consensus       471 l~it~eeid~~~~~l~~al~~~~~  494 (504)
T PLN02760        471 LIITPEEVDELISIYGKALKATEE  494 (504)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH
Confidence              9999999999999999988754

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=99.91  E-value=7.8e-22  Score=205.10  Aligned_cols=373  Identities=11%  Similarity=0.053  Sum_probs=231.4

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      +..++++...++.||++      ++|+..|....                      ..+++    ++++++++.+++.+.
T Consensus        27 ~~~~a~G~~l~D~dG~~------ylD~~~g~~~~----------------------~lGH~----~p~v~~Ai~~ql~~~   74 (445)
T PRK08593         27 VIDHGYGATLTDVDGKT------YIDLLASASSQ----------------------NVGHA----PPRVVEAIKAQADKF   74 (445)
T ss_pred             eEEeeeeCEEEeCCCCE------EEECCccHHhh----------------------cCCCC----CHHHHHHHHHHHHhc
Confidence            44566666666677777      77775553221                      11111    689999999999863


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCC-CeEEEcCCcCcchHHHHHH
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-DGILCPIPQYPLYSASIAL  234 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vlv~~p~~~~~~~~~~~  234 (533)
                      ..     +.......+....+++.+.+.... ...+.|+++++|++|++.+++..+...| .+|+....+|++.......
T Consensus        75 ~~-----~~~~~~~~~~~~~lae~L~~~~p~-~~~~~v~f~~SGseA~e~AiklAr~~tgr~~ii~~~~~YHG~t~~als  148 (445)
T PRK08593         75 IH-----YTPAYMYHEPLVRLAKKLCELAPG-DFEKRVTFGLSGSDANDGIIKFARAYTGRPYIISFTNAYHGSTYGSLS  148 (445)
T ss_pred             cC-----ccccccCCHHHHHHHHHHHHhCCC-CCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCcHHHHh
Confidence            21     111111223344455555443221 1125899999999999999998753344 5788899999987644332


Q ss_pred             h-CC-------------eEEEEecCCCCC--CC-CCH-------HHHHHHHHHHHhcCCCeeEEEEeCCCCCCccC-CCH
Q 009517          235 H-GG-------------TLVPYYLDEATG--WG-LET-------SEVKKQLEAAKAKGITVRALVVINPGNPTGQV-LAE  289 (533)
Q Consensus       235 ~-g~-------------~~~~v~~~~~~~--~~-ld~-------~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~-~s~  289 (533)
                      . +.             .+..+|......  +. .+.       +.+++.+.... ...++.+||++..++..|.+ +++
T Consensus       149 ~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iAavI~EPv~g~gG~~~~~~  227 (445)
T PRK08593        149 MSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKYL-PADEVACIVIETIQGDGGLLEPVP  227 (445)
T ss_pred             hcCCCcccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHHHHHHHHHHHhhc-CCCceEEEEEccccCCCCCcCCCH
Confidence            2 21             122233221100  11 111       33444333210 01368888888888778885 788


Q ss_pred             HHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCC
Q 009517          290 ENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFS  369 (533)
Q Consensus       290 ~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~  369 (533)
                      +.+++|.++|++||+++|+||++++|...|.  ...     .+..++.||     +.+|+|.+ | .|+++|++++   +
T Consensus       228 ~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~--~~a-----~~~~gv~pD-----i~t~gK~l-~-~G~p~gav~~---~  290 (445)
T PRK08593        228 GYFEALYKFCREHGILFAVDDIQQGLGRTGK--WSS-----ISHFNITPD-----LMSFGKSL-A-GGMPMSAIVG---R  290 (445)
T ss_pred             HHHHHHHHHHHHcCCEEEEechhhCCCcCch--HHH-----HHhcCCCCC-----Eeeecccc-c-CCcccEEEEE---c
Confidence            8999999999999999999999999765543  111     111122577     56899999 4 5899999998   8


Q ss_pred             HHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCceEecC
Q 009517          370 AEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL----EGITCNKA  444 (533)
Q Consensus       370 ~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~  444 (533)
                      +++++.+..... .+++.++++++++.+.|+.           .++ +.+.++.+++.+++++.|+++    |.+.-++.
T Consensus       291 ~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~-----------l~~-~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG  358 (445)
T PRK08593        291 KEIMESLEAPAHLFTTGANPVSCAAALATIDM-----------IED-ESLLQRSAEKGEYARKRFDQWVSKYNFVGDVRG  358 (445)
T ss_pred             HHHHhhhccCCCCCCCCCCHHHHHHHHHHHHH-----------HHh-ccHHHHHHHHHHHHHHHHHHHHhcCCcEEEEec
Confidence            999888753332 5778899999988888741           111 245556666666677766653    44556677


Q ss_pred             CceeEEecccCCCHHHHHHHHhcCC-CChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHH
Q 009517          445 EGAMYLFPRIQLPEKAIKAAEAEKT-VPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLT  521 (533)
Q Consensus       445 ~gg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~  521 (533)
                      .|.++.+ .+..+...     ..+. .....++ ..+.++||++.+.       +.+.+|+++.  +++++|++++++++
T Consensus       359 ~Gl~~gi-~l~~~~~~-----~~~~~~~~~~~~-~~~~~~Gv~~~~~-------~~~~lr~~p~l~~t~~~id~~~~~l~  424 (445)
T PRK08593        359 YGLSIGI-DIVSDKKL-----KTRDNEAALKIC-NYCFEHGVVIIAV-------AGNVLRFQPPLVITYEQLDTALNTIE  424 (445)
T ss_pred             cceEEEE-EEecCCCc-----CCCcHHHHHHHH-HHHHHCCeEEecc-------CCCEEEEECCCccCHHHHHHHHHHHH
Confidence            7766543 22211000     0000 0012333 4455689999752       1237899885  89999999999999


Q ss_pred             HHHHHHHHH
Q 009517          522 DFHKNFMDK  530 (533)
Q Consensus       522 ~~l~~~~~~  530 (533)
                      ++++++.+.
T Consensus       425 ~~l~~~~~~  433 (445)
T PRK08593        425 QAFTALEAG  433 (445)
T ss_pred             HHHHHHhcc
Confidence            999987654

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=99.91  E-value=7.4e-22  Score=201.44  Aligned_cols=215  Identities=13%  Similarity=0.133  Sum_probs=163.9

Q ss_pred             cccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHH----HHHhCCeEEEE
Q 009517          167 QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS----IALHGGTLVPY  242 (533)
Q Consensus       167 ~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~----~~~~g~~~~~v  242 (533)
                      .-..+|+++++++.+        .+..++++++++|+..++..++ .+||+|+++.+.|......    +...|+++..+
T Consensus        40 p~~~~le~~la~l~g--------~~~a~~~~sG~~Ai~~~l~~l~-~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v  110 (369)
T cd00614          40 PTVDALEKKLAALEG--------GEAALAFSSGMAAISTVLLALL-KAGDHVVASDDLYGGTYRLFERLLPKLGIEVTFV  110 (369)
T ss_pred             hhHHHHHHHHHHHHC--------CCCEEEEcCHHHHHHHHHHHHc-CCCCEEEECCCCcchHHHHHHHHHhhcCeEEEEe
Confidence            337788888888864        3567888889999999999998 7999999999999886543    44678888877


Q ss_pred             ecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCC
Q 009517          243 YLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKK  322 (533)
Q Consensus       243 ~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~  322 (533)
                      +.+       |++.+++++++      ++++|++++|+||+|.+.+   +++|+++|+++|+++|+|++|....+..  +
T Consensus       111 ~~~-------d~~~l~~~i~~------~~~~v~~e~~~np~g~~~d---l~~i~~la~~~g~~livD~t~~~~~~~~--~  172 (369)
T cd00614         111 DPD-------DPEALEAAIKP------ETKLVYVESPTNPTLKVVD---IEAIAELAHEHGALLVVDNTFATPYLQR--P  172 (369)
T ss_pred             CCC-------CHHHHHHhcCC------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcchhcCC--h
Confidence            643       58899998875      7999999999999999998   8899999999999999999997643311  1


Q ss_pred             cccHHHHHhhcCCCCCCceEEEEecCCccCCCCCC-CeeEEEEEecCCH-HHHHHHHHhhh-ccccCChHHHHHHHHHcC
Q 009517          323 FHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFSA-EVREQIYKVAS-VNLCSNISGQILASLVMS  399 (533)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G-~riG~v~~~~~~~-~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~  399 (533)
                            +  ++   ..|   +++.|+||.++| +| .++||+++   ++ ++++.+..... .+.+.++..++++...|+
T Consensus       173 ------~--~~---g~D---ivv~S~tK~l~g-~~~~~gG~v~~---~~~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l~  234 (369)
T cd00614         173 ------L--EL---GAD---IVVHSATKYIGG-HSDVIAGVVVG---SGEALIQRLRFLRLALGTILSPFDAWLLLRGLK  234 (369)
T ss_pred             ------h--hh---CCc---EEEeccceeccC-CCCceEEEEEe---CcHHHHHHHHHHHHhhCCCCCHHHHHHHHcCCC
Confidence                  1  11   233   789999999943 44 88999998   55 88888876654 445566776666655553


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Q 009517          400 PPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGIT  440 (533)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~  440 (533)
                                    .+....++..++.+.+.+.|++.|++.
T Consensus       235 --------------tl~~r~~~~~~na~~la~~L~~~~~v~  261 (369)
T cd00614         235 --------------TLPLRMERHSENALKVAEFLEKHPKVE  261 (369)
T ss_pred             --------------CHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence                          123345566778888999998886653

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>PRK14012 cysteine desulfurase; Provisional

Probab=99.91  E-value=3.9e-22  Score=206.47  Aligned_cols=321  Identities=14%  Similarity=0.130  Sum_probs=210.1

Q ss_pred             CHHHHHHHHHHHh--cCCCCCccccCC------CcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhc-
Q 009517          141 SADSIERAWQILD--QIPGRATGAYSH------SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI-  211 (533)
Q Consensus       141 p~~v~~~~~~~~~--~~~~~~~~~Y~~------~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-  211 (533)
                      |+.+++++.+.+.  .... .......      .....++|+.++++++      .++++|++++|+++++..++.++. 
T Consensus        16 ~~~v~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~ia~~~g------~~~~~v~~~~g~t~al~~~l~~l~~   88 (404)
T PRK14012         16 DPRVAEKMMPYLTMDGTFG-NPASRSHRFGWQAEEAVDIARNQIADLIG------ADPREIVFTSGATESDNLAIKGAAH   88 (404)
T ss_pred             CHHHHHHHHHHHHhcccCc-CCCchhhHHHHHHHHHHHHHHHHHHHHcC------cCcCeEEEeCCHHHHHHHHHHHHHH
Confidence            7888888888775  2111 0111111      1235567777877764      567889999999999999887663 


Q ss_pred             --cCCCCeEEEcCCcCcchHHHHHH---hCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccC
Q 009517          212 --RSENDGILCPIPQYPLYSASIAL---HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV  286 (533)
Q Consensus       212 --~~~gd~Vlv~~p~~~~~~~~~~~---~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~  286 (533)
                        ..+||+|+++.++|+.....+..   .|++++.++.++  ++.+|++.++++|++      ++++|++++++||||.+
T Consensus        89 ~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~~~--~g~~d~~~l~~~i~~------~t~lv~~~~~~n~tG~~  160 (404)
T PRK14012         89 FYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDPQS--NGIIDLEKLEAAMRD------DTILVSIMHVNNEIGVI  160 (404)
T ss_pred             hhcCCCCEEEEecCccHHHHHHHHHHHhCCCEEEEEccCC--CCcCCHHHHHHhcCC------CCEEEEEECcCCCccch
Confidence              25799999999999877555443   599999998874  457899999999976      78999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEe
Q 009517          287 LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVT  366 (533)
Q Consensus       287 ~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~  366 (533)
                      .+   +++|.++|+++|+++|+|+++..    |..+ .++    ..+   ..|   +++.|++|.+ | |+ ++|++++ 
T Consensus       161 ~~---~~~I~~la~~~g~~vivD~a~~~----g~~~-~~~----~~~---~~D---~~~~s~~K~~-g-p~-g~G~l~~-  218 (404)
T PRK14012        161 QD---IAAIGEICRERGIIFHVDAAQSV----GKVP-IDL----SKL---KVD---LMSFSAHKIY-G-PK-GIGALYV-  218 (404)
T ss_pred             hh---HHHHHHHHHHcCCEEEEEcchhc----CCcc-cCc----ccC---CCC---EEEEehhhcc-C-CC-ceEEEEE-
Confidence            98   88999999999999999999874    2211 111    111   234   5677999976 6 33 6888887 


Q ss_pred             cCCHHHHHHHHHhh-h------c-cccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 009517          367 GFSAEVREQIYKVA-S------V-NLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEG  438 (533)
Q Consensus       367 ~~~~~~~~~l~~~~-~------~-~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  438 (533)
                        +++....+.+.. .      . ..+++........+++.          ....+...+.++.++.++++.+.|+++++
T Consensus       219 --~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~----------~~~~~~~~~~~~~~~l~~~l~~~L~~~~~  286 (404)
T PRK14012        219 --RRKPRVRLEAQMHGGGHERGMRSGTLPTHQIVGMGEAAR----------IAKEEMATENERIRALRDRLWNGIKDIEE  286 (404)
T ss_pred             --ecCCCCCCCceecCCCccCCccCCCcCHHHHHHHHHHHH----------HHHhhHHHHHHHHHHHHHHHHHHHhcCCC
Confidence              433222222210 0      0 11223333333333332          11123445667778888899999988877


Q ss_pred             ceEecC-----CceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCC----------------C
Q 009517          439 ITCNKA-----EGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQV----------------P  497 (533)
Q Consensus       439 ~~~~~~-----~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~----------------~  497 (533)
                      +.+..+     ...+++|+.+  +.             ...+ ...|  +++.+..|..|...                .
T Consensus       287 i~~~~~~~~~~~~~~~~~~~~--~~-------------~~~~-~~~l--~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~  348 (404)
T PRK14012        287 VYLNGDLEQRVPGNLNVSFNY--VE-------------GESL-IMAL--KDLAVSSGSACTSASLEPSYVLRALGLNDEL  348 (404)
T ss_pred             EEEeCCccccCCCEEEEEEeC--cC-------------HHHH-HHhC--CCeEEEchhhhCCCCCCCCHHHHHcCCChhh
Confidence            765422     1233344222  11             1122 2333  37777777665321                0


Q ss_pred             CCceEEEEec--CCcCcHHHHHHHHHHHHHHHH
Q 009517          498 GTWHFRCTIL--PQEDKIPAIVTRLTDFHKNFM  528 (533)
Q Consensus       498 g~~~iRis~~--~~~e~i~~~~~~l~~~l~~~~  528 (533)
                      ..+.||||+.  .++++++++++.|+++++.+.
T Consensus       349 ~~~~iRls~~~~~t~~dvd~~~~~l~~~~~~~~  381 (404)
T PRK14012        349 AHSSIRFSLGRFTTEEEIDYAIELVRKSIGKLR  381 (404)
T ss_pred             cCceEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence            1258999996  889999999999999888763

>PRK06541 hypothetical protein; Provisional

Probab=99.91  E-value=6.6e-22  Score=206.09  Aligned_cols=373  Identities=14%  Similarity=0.070  Sum_probs=234.0

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      ++.++++...++.||++      +||+..|....                      ..+++    ++.+++++.+++.+.
T Consensus        37 ~i~~a~G~~l~D~dG~~------ylD~~~g~~~~----------------------~lGh~----~p~v~~Av~~q~~~~   84 (460)
T PRK06541         37 VIVRGEGCYIWDDRGKR------YLDGLAGLFVV----------------------QVGHG----RAELAEAAAKQAGTL   84 (460)
T ss_pred             eEEeCcccEEEeCCCCE------EEECCccHHhc----------------------cCCCC----CHHHHHHHHHHHhhC
Confidence            35567777667777777      77776654221                      11122    688999999999874


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC------C-CCeEEEcCCcCcch
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS------E-NDGILCPIPQYPLY  228 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~------~-gd~Vlv~~p~~~~~  228 (533)
                      .......|     ..+....+|+.+.+...  ...++++++++|++|++.+++..+..      + ..+|+....+|++.
T Consensus        85 ~~~~~~~~-----~~~~~~~la~~l~~~~p--~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~  157 (460)
T PRK06541         85 AFFPLWSY-----AHPPAIELAERLAALAP--GDLNRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGT  157 (460)
T ss_pred             cCcccccc-----CCHHHHHHHHHHHHhCC--CCcCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCc
Confidence            21001112     22334445555554322  22468999999999999999987521      1 36799999999987


Q ss_pred             HHHHHHh-CCe------------EEEEecCCCC---CCCCC--------HHHHHHHHHHHHhcCCCeeEEEEeCCCCCCc
Q 009517          229 SASIALH-GGT------------LVPYYLDEAT---GWGLE--------TSEVKKQLEAAKAKGITVRALVVINPGNPTG  284 (533)
Q Consensus       229 ~~~~~~~-g~~------------~~~v~~~~~~---~~~ld--------~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG  284 (533)
                      ...+... |..            +..+|.....   .|+-+        ++.+++.++..  ....+.+|+++..++++|
T Consensus       158 t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~Aavi~EPv~g~~G  235 (460)
T PRK06541        158 TQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEFE--GPDTVAAVFLEPVQNAGG  235 (460)
T ss_pred             chhhhcCcCChhhccccCCCCCCcEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhc--CCCCEEEEEECCccCCCC
Confidence            6544332 111            1222211100   01222        25566666531  112455555555589999


Q ss_pred             cCC-CHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCC-eeEE
Q 009517          285 QVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGK-RGGY  362 (533)
Q Consensus       285 ~~~-s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~-riG~  362 (533)
                      .+. +++.+++|.++|++||+++|+||++++|...|.  ...     .+..++.||     +.+|||.+ | .|+ ++|+
T Consensus       236 ~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~--~~a-----~~~~gv~PD-----ivt~gK~l-~-~G~~piga  301 (460)
T PRK06541        236 CFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGE--MFG-----CERFGYVPD-----IITCAKGI-T-SGYSPLGA  301 (460)
T ss_pred             CccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCch--hhh-----hhhcCCCCC-----EEEecccc-c-CCccceeE
Confidence            865 588899999999999999999999999754442  111     111222577     44699999 4 587 9999


Q ss_pred             EEEecCCHHHHHHHHHh-----hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Q 009517          363 MEVTGFSAEVREQIYKV-----ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL-  436 (533)
Q Consensus       363 v~~~~~~~~~~~~l~~~-----~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-  436 (533)
                      +++   ++++++.+...     ...+++.++++++++.+.|+.           .+ .+.+.++++++.++|.+.|+++ 
T Consensus       302 v~~---~~~i~~~~~~~~~~~~~~~T~~gnp~~~aaala~l~~-----------l~-~~~~~~~~~~~g~~l~~~L~~l~  366 (460)
T PRK06541        302 MIA---SDRLFEPFLDGPTMFLHGYTFGGHPVSAAVALANLDI-----------FE-REGLLDHVRDNEPAFRATLEKLL  366 (460)
T ss_pred             EEE---cHHHHHHhhcCCCccccCCCCCCCHHHHHHHHHHHHH-----------HH-hccHHHHHHHHHHHHHHHHHHhh
Confidence            998   89998877532     125778899999888888741           11 1345677888888888888776 


Q ss_pred             --CCceEecCCceeEEecccCCCHHHHHHHHhcCCCC------hHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec-
Q 009517          437 --EGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVP------DAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-  507 (533)
Q Consensus       437 --~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-  507 (533)
                        |-+..+++.|.|+.+- +..+..     .+.....      ....+...|.++||++.+.     ..+.+.+||++. 
T Consensus       367 ~~~~v~~vrg~Gl~~~ie-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----~~g~~~lrl~Ppl  435 (460)
T PRK06541        367 DLPIVGDVRGDGYFYGIE-LVKDKA-----TKETFTDDESERLLRGFLSPALFEAGLYCRAD-----DRGDPVVQLAPPL  435 (460)
T ss_pred             cCCCeEEEEecceEEEEE-EecCcc-----cccCCcchhhhhhHHHHHHHHHHhCCeEEEec-----CCCCCEEEEECCC
Confidence              2234567788776642 211100     0000000      0112334455789999872     123348999996 


Q ss_pred             -CCcCcHHHHHHHHHHHHHHHHH
Q 009517          508 -PQEDKIPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       508 -~~~e~i~~~~~~l~~~l~~~~~  529 (533)
                       +++++|++++++|+++++++..
T Consensus       436 ~~t~~~id~~~~~l~~~l~~~~~  458 (460)
T PRK06541        436 ISGQEEFDEIEQILRSVLTEAWA  458 (460)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHh
Confidence             8999999999999999987654

>PRK07482 hypothetical protein; Provisional

Probab=99.90  E-value=9.3e-22  Score=205.23  Aligned_cols=373  Identities=13%  Similarity=0.030  Sum_probs=237.4

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      ++.++++...++.||++      +||+..|....                      ..+++    ++++++++.+++.+.
T Consensus        35 ~i~~a~G~~l~D~dG~~------ylD~~sg~~~~----------------------~lGh~----~p~v~~Av~~q~~~~   82 (461)
T PRK07482         35 IVEGGEGIRITDAQGRR------YIDAFAGLYCV----------------------NVGYG----RTEVAEAIAEQAKEL   82 (461)
T ss_pred             eEEeeeeeEEEECCCCE------EEEcccchhhh----------------------cCCCC----CHHHHHHHHHHHHhc
Confidence            45677777777778888      88887665432                      11222    689999999999873


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc------CCC-CeEEEcCCcCcch
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR------SEN-DGILCPIPQYPLY  228 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~------~~g-d~Vlv~~p~~~~~  228 (533)
                      ..  .+.+.  .-..+.+..+|+.+.+...  ...++++++++|++|++.+++..+.      .++ .+|+....+|++.
T Consensus        83 ~~--~~~~~--~~~~~~~~~lAe~L~~~~p--~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~  156 (461)
T PRK07482         83 AY--YHTYV--GHGTEASITLSKRIIDRAP--AGMSKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGS  156 (461)
T ss_pred             Cc--ccccc--ccCCHHHHHHHHHHHHhCC--CCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCc
Confidence            21  11110  1123455556666654322  2346899999999999999998851      122 5799899999996


Q ss_pred             HHHHHHhCC-------------eEEEEecCCCCC---CCC--------CHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCc
Q 009517          229 SASIALHGG-------------TLVPYYLDEATG---WGL--------ETSEVKKQLEAAKAKGITVRALVVINPGNPTG  284 (533)
Q Consensus       229 ~~~~~~~g~-------------~~~~v~~~~~~~---~~l--------d~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG  284 (533)
                      .........             .+..++......   ++.        +++.+++.+...  ...++.+||++..+...|
T Consensus       157 t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~iAAvi~EPvqg~gG  234 (461)
T PRK07482        157 GVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSAYCADELEELILAE--GPDTIAAFIAEPVLGTGG  234 (461)
T ss_pred             cHhhhhccCCchhhhccCCCCCCCEEcCCCccccccccCCCHHHHHHHHHHHHHHHHHhc--CCCcEEEEEECCccCCCC
Confidence            543332211             111111110000   000        356677777431  123688888887666667


Q ss_pred             cC-CCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCC-eeEE
Q 009517          285 QV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGK-RGGY  362 (533)
Q Consensus       285 ~~-~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~-riG~  362 (533)
                      ++ ++++.+++|.++|++||+++|+||++++|...|.  ...     .+..++.||     +.+++|.++  .|+ ++|.
T Consensus       235 ~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~--~~a-----~~~~gv~PD-----iv~~gKgl~--gG~~Pi~a  300 (461)
T PRK07482        235 IVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGS--MFG-----SDHYGIEPD-----LITVAKGLT--SAYAPLSG  300 (461)
T ss_pred             CcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcc--hhh-----HHhcCCCCC-----EEEEccccc--cCccccce
Confidence            75 6777899999999999999999999999866653  222     222334788     566899995  385 9999


Q ss_pred             EEEecCCHHHHHHHHH--------hhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009517          363 MEVTGFSAEVREQIYK--------VASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFN  434 (533)
Q Consensus       363 v~~~~~~~~~~~~l~~--------~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  434 (533)
                      +++   .+++++.+..        ....|++.++++++++.+.|+.           .+ .+.+.++.+++.++|.+.|+
T Consensus       301 v~~---~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~-----------~~-~~~l~~~~~~~g~~l~~~L~  365 (461)
T PRK07482        301 SIV---GEKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDI-----------LE-RENLVGNAAEVGAYFRARLR  365 (461)
T ss_pred             eee---cHHHHHHHhcccccCCccccCCCCCcCHHHHHHHHHHHHH-----------HH-hCCHHHHHHHHHHHHHHHHH
Confidence            988   8888887752        1236788999999999998841           11 13455566667777777776


Q ss_pred             cC----CCceEecCCceeEEecccCCCHHHHHHHHhcCCCC----hHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEe
Q 009517          435 SL----EGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVP----DAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTI  506 (533)
Q Consensus       435 ~~----~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~  506 (533)
                      ++    |.+..++..|.|+.. .+.....     .+.....    ...++ ..+.++||++.++.      +.+.+|+.+
T Consensus       366 ~l~~~~~~v~~vrG~Glm~gi-el~~~~~-----~~~~~~~~~~~~~~i~-~~~~~~Gvl~~~~~------~~~~i~~~P  432 (461)
T PRK07482        366 AAFGDHPLVGEVRGVGMLAAV-EFVADRD-----DRTPFDPALKIGPQVS-AAALERGVIARAMP------HGDILGFAP  432 (461)
T ss_pred             HHHhcCCCEEEEeeceeEEEE-EeccCCC-----cCCCCChhhHHHHHHH-HHHHHCCcEEecCC------CCCEEEEeC
Confidence            43    445667777766543 2321100     0000010    12333 44556899987521      123789986


Q ss_pred             --cCCcCcHHHHHHHHHHHHHHHHHH
Q 009517          507 --LPQEDKIPAIVTRLTDFHKNFMDK  530 (533)
Q Consensus       507 --~~~~e~i~~~~~~l~~~l~~~~~~  530 (533)
                        .+++++|++++++|+++++++.++
T Consensus       433 pl~it~~ei~~~~~~l~~~l~~~~~~  458 (461)
T PRK07482        433 PLVLTRAEADEIVAIAKDAVDEVLGR  458 (461)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence              489999999999999999887543

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=99.90  E-value=1.3e-21  Score=200.34  Aligned_cols=220  Identities=15%  Similarity=0.174  Sum_probs=161.3

Q ss_pred             cccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcch----HHHHHHhC
Q 009517          161 GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLY----SASIALHG  236 (533)
Q Consensus       161 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~----~~~~~~~g  236 (533)
                      ..|+.+. ..+|++++|++.+        .+..+++++++.|+..++..++ .+||+|+++.|.|...    ...+...|
T Consensus        54 ~r~~~p~-~~~le~~lA~l~g--------~~~av~~~sG~~Ai~~~l~al~-~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G  123 (391)
T TIGR01328        54 SRLGNPT-VSNLEGRIAFLEG--------TEAAVATSSGMGAIAATLLTIL-KAGDHLISDECLYGCTFALLEHALTKFG  123 (391)
T ss_pred             eCCCCch-HHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHHh-CCCCEEEEecCcchHHHHHHHHHHhcCC
Confidence            3444443 6789999999975        2447788888899999999888 7999999999988653    34445578


Q ss_pred             CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEcccccccc
Q 009517          237 GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENV  316 (533)
Q Consensus       237 ~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~  316 (533)
                      +++..++.+       |++.+++++++      ++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|....
T Consensus       124 ~~~~~vd~~-------d~e~l~~~i~~------~tklV~le~p~Np~G~v~d---l~~I~~la~~~gi~livD~a~a~~~  187 (391)
T TIGR01328       124 IQVDFINMA-------IPEEVKAHIKD------NTKIVYFETPANPTMKLID---MERVCRDAHSQGVKVIVDNTFATPM  187 (391)
T ss_pred             eEEEEECCC-------CHHHHHHhhcc------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCchhc
Confidence            888888753       78999999876      7999999999999999998   8899999999999999999997543


Q ss_pred             ccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCe-eEEEEEecCCHHHHHHHHHhhh---ccccCChHHHH
Q 009517          317 YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKR-GGYMEVTGFSAEVREQIYKVAS---VNLCSNISGQI  392 (533)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~r-iG~v~~~~~~~~~~~~l~~~~~---~~~~~~~~~q~  392 (533)
                      + +. +      +  ..   ..|   +++.|+||.+ |.+|.+ .|++++   ++++++.+.....   .+...++..++
T Consensus       188 ~-~~-~------~--~~---g~D---ivv~S~sK~l-gg~g~~~gG~v~~---~~~li~~l~~~~~~~~~g~~l~~~~a~  247 (391)
T TIGR01328       188 L-TN-P------V--AL---GVD---VVVHSATKYI-GGHGDVVAGLICG---KAELLQQIRMVGIKDMTGSVISPFDAW  247 (391)
T ss_pred             c-CC-c------h--hc---CCC---EEEccccccc-cCCCCceEEEEEc---CHHHHHHHHHHHHHhCCCCCCCcHHHH
Confidence            3 11 1      1  11   234   7789999999 667877 466665   8888888775432   22344555555


Q ss_pred             HHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Q 009517          393 LASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGIT  440 (533)
Q Consensus       393 a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~  440 (533)
                      ++...|+              .+..+.++..++.+.+.+.|++.|++.
T Consensus       248 l~l~~L~--------------tl~~r~~~~~~na~~la~~L~~~p~v~  281 (391)
T TIGR01328       248 LILRGLK--------------TLNIRMKRHSENAMKVAEYLKSHPAVE  281 (391)
T ss_pred             HHHhCcC--------------cHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            5544442              233345556777788888888876653

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=99.90  E-value=1.5e-21  Score=200.36  Aligned_cols=221  Identities=13%  Similarity=0.137  Sum_probs=165.3

Q ss_pred             cccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcC----cchHHHHHHhC
Q 009517          161 GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQY----PLYSASIALHG  236 (533)
Q Consensus       161 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~----~~~~~~~~~~g  236 (533)
                      ..|+.+. ..+|++++|++.+        .++.+++++|+.|+..++..++ .+||+|+++...|    ..+...+...|
T Consensus        65 ~r~~~p~-~~~le~~lA~l~g--------~~~al~~~sG~~Ai~~~l~all-~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G  134 (403)
T PRK07810         65 SRYGNPT-VSMFEERLRLIEG--------AEACFATASGMSAVFTALGALL-GAGDRLVAARSLFGSCFVVCNEILPRWG  134 (403)
T ss_pred             eCCCCch-HHHHHHHHHHHhC--------CCcEEEECChHHHHHHHHHHHh-CCCCEEEEccCCcchHHHHHHHHHHHcC
Confidence            3455544 7789999999864        3478888889999999998888 7999999887554    44556677789


Q ss_pred             CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEcccccccc
Q 009517          237 GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENV  316 (533)
Q Consensus       237 ~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~  316 (533)
                      ++++.++.       .|++.+++++++      ++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|....
T Consensus       135 ~~v~~vd~-------~d~~~l~~ai~~------~tklV~~esp~Nptg~v~d---l~~I~~la~~~g~~vivD~a~a~~~  198 (403)
T PRK07810        135 VETVFVDG-------EDLSQWEEALSV------PTQAVFFETPSNPMQSLVD---IAAVSELAHAAGAKVVLDNVFATPL  198 (403)
T ss_pred             cEEEEECC-------CCHHHHHHhcCc------CceEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCCccc
Confidence            99998863       289999999987      7999999999999999997   9999999999999999999997643


Q ss_pred             ccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCee-EEEEEecCCHHHHH-HHHHhhh-ccccCChHHHHH
Q 009517          317 YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRG-GYMEVTGFSAEVRE-QIYKVAS-VNLCSNISGQIL  393 (533)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~ri-G~v~~~~~~~~~~~-~l~~~~~-~~~~~~~~~q~a  393 (533)
                      +..  +   +     .+   ..|   |++.|++|.+ +.+|.++ |++++   +++.+. .+..... ...+.+++.+++
T Consensus       199 ~~~--~---~-----~~---gaD---ivv~S~tK~l-~g~g~~~gG~v~~---~~~~~~~~l~~~~~~~g~~~s~~~a~l  258 (403)
T PRK07810        199 LQR--G---L-----PL---GAD---VVVYSGTKHI-DGQGRVLGGAILG---DREYIDGPVQKLMRHTGPALSAFNAWV  258 (403)
T ss_pred             cCC--h---h-----hc---CCc---EEEccCCcee-cCCcCceeEEEEe---ChHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence            321  1   1     11   234   7899999999 5578887 77776   666554 4554433 445677887777


Q ss_pred             HHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceE
Q 009517          394 ASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITC  441 (533)
Q Consensus       394 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~  441 (533)
                      +...|+              .+..+.++..++...+.+.|++.|++..
T Consensus       259 ~l~~L~--------------tl~~R~~~~~~~a~~~a~~L~~~p~v~~  292 (403)
T PRK07810        259 LLKGLE--------------TLALRVRHSNASALRIAEFLEGHPAVRW  292 (403)
T ss_pred             HHhccC--------------cHHHHHHHHHHHHHHHHHHHhcCCCccE
Confidence            766664              2344555566677778888888776553

>PRK07050 cystathionine beta-lyase; Provisional

Probab=99.90  E-value=1.7e-21  Score=199.49  Aligned_cols=297  Identities=14%  Similarity=0.088  Sum_probs=197.0

Q ss_pred             ccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHH----HHHHh
Q 009517          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA----SIALH  235 (533)
Q Consensus       160 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~----~~~~~  235 (533)
                      ...|+.+. ..+|+++++++.+        .+++++++|+++|+..++.+++ ++||+|+++.|+|..+..    .+...
T Consensus        59 Y~r~~~pt-~~~Le~~lA~l~g--------~~~~l~~~sgt~Ai~~~l~al~-~~GD~Vl~~~~~y~~~~~~~~~~~~~~  128 (394)
T PRK07050         59 YGLHATPT-SLALAQRLAEIEG--------GRHALLQPSGLAAISLVYFGLV-KAGDDVLIPDNAYGPNRDHGEWLARDF  128 (394)
T ss_pred             cCCCCCHH-HHHHHHHHHHHhC--------CCeEEEeccHHHHHHHHHHHHh-CCCCEEEEecCCcccHHHHHHHHHHhc
Confidence            33444433 6788888888753        4689999999999999999998 899999999999998664    45667


Q ss_pred             CCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccc
Q 009517          236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN  315 (533)
Q Consensus       236 g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~  315 (533)
                      |+++..++..       +.+.+++++++      ++++|++++|+||+|.+   .++++|+++|+++|+++|+|++|...
T Consensus       129 Gi~v~~vd~~-------~~~~l~~~i~~------~tklV~le~p~Np~~~~---~di~~I~~ia~~~gi~livD~a~a~~  192 (394)
T PRK07050        129 GITVRFYDPL-------IGAGIADLIQP------NTRLIWLEAPGSVTMEV---PDVPAITAAARARGVVTAIDNTYSAG  192 (394)
T ss_pred             CeEEEEECCC-------CHHHHHHhcCC------CCeEEEEECCCCCCccH---hhHHHHHHHHHHcCCEEEEECCcccc
Confidence            9988887632       45778888876      79999999999999754   55999999999999999999999753


Q ss_pred             cccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHH
Q 009517          316 VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILA  394 (533)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~  394 (533)
                      .+..        .+  ..   ..   .|++.|++|.++|..+.+.|++++  .++++++.+...+. .+.+.++..+..+
T Consensus       193 ~~~~--------~l--~~---Ga---Di~v~S~tK~~~g~~~~~gG~v~~--~~~~~~~~~~~~~~~~G~~~~~~~a~l~  254 (394)
T PRK07050        193 LAFK--------PF--EH---GV---DISVQALTKYQSGGSDVLMGATIT--ADAELHAKLKLARMRLGIGVSADDCSLV  254 (394)
T ss_pred             cccC--------HH--Hc---CC---eEEEEECCceecCCCCeeEEEEEE--CCHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            2210        11  11   12   388999999996555577998886  36788888876655 4556666666555


Q ss_pred             HHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEec------------------CCceeEEecccCC
Q 009517          395 SLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNK------------------AEGAMYLFPRIQL  456 (533)
Q Consensus       395 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~------------------~~gg~~~~~~~~~  456 (533)
                      ...|+.              +....++..++...+.+.|++.|++..+.                  ..|+++.+. +..
T Consensus       255 lr~l~t--------------l~~Rl~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~s~~-l~~  319 (394)
T PRK07050        255 LRGLPS--------------LQVRLAAHDRSALEVAEWLKARPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVV-FDE  319 (394)
T ss_pred             HcCCCc--------------HHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEE-ECC
Confidence            544431              22344445556667888887765543221                  124544432 221


Q ss_pred             CHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCC--------------CCCCceEEEEecCCcCcHHHHHHHHHH
Q 009517          457 PEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ--------------VPGTWHFRCTILPQEDKIPAIVTRLTD  522 (533)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~--------------~~g~~~iRis~~~~~e~i~~~~~~l~~  522 (533)
                      ... .        .....|+ ..|+..++.+.-|.....              ....+.||||+++  |+.+.+++.|.+
T Consensus       320 ~~~-~--------~~~~~~~-~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~iR~svGl--E~~~dl~~dl~~  387 (394)
T PRK07050        320 RYS-P--------AQVDAFV-EALELFAIGWSWGGACSLAMPYDVASMRTAKWPHRGTLVRLYIGL--EDEADLIADLEQ  387 (394)
T ss_pred             CCC-H--------HHHHHHH-HcCCCCeeccccCCccceEeeCcccccchhhcCCCCCEEEEEeCc--CCHHHHHHHHHH
Confidence            000 0        0112222 334445544433322210              0112589999996  457788888888


Q ss_pred             HHHHH
Q 009517          523 FHKNF  527 (533)
Q Consensus       523 ~l~~~  527 (533)
                      +++..
T Consensus       388 al~~~  392 (394)
T PRK07050        388 ALEAA  392 (394)
T ss_pred             HHHHh
Confidence            87754

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=99.90  E-value=2.7e-21  Score=197.93  Aligned_cols=218  Identities=14%  Similarity=0.152  Sum_probs=157.5

Q ss_pred             CcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHH----hCCeEEE
Q 009517          166 SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL----HGGTLVP  241 (533)
Q Consensus       166 ~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~----~g~~~~~  241 (533)
                      .....+|++++|++.+.        +..++++++++|+..++..++ ++||+|+++.|+|......+..    .|+++..
T Consensus        60 ~p~~~~Le~~lA~~~g~--------~~~i~~~sG~~Ai~~~l~all-~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~  130 (388)
T PRK07811         60 NPTRTALEEQLAALEGG--------AYGRAFSSGMAATDCLLRAVL-RPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTP  130 (388)
T ss_pred             CccHHHHHHHHHHHhCC--------CceEEeCCHHHHHHHHHHHHh-CCCCEEEEcCCCchHHHHHHHHhCcCCCeEEEE
Confidence            34588999999999752        233555667899999999998 8999999999999864433322    4777766


Q ss_pred             EecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCC
Q 009517          242 YYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEK  321 (533)
Q Consensus       242 v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~  321 (533)
                      ++.       .|++++++++++      ++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|....+.  .
T Consensus       131 ~d~-------~d~e~l~~~i~~------~tklV~ie~p~NPtg~~~d---l~~I~~la~~~gi~lIvD~a~a~~~~~--~  192 (388)
T PRK07811        131 VDL-------SDLDAVRAAITP------RTKLIWVETPTNPLLSITD---IAALAELAHDAGAKVVVDNTFASPYLQ--Q  192 (388)
T ss_pred             eCC-------CCHHHHHHhcCc------CCeEEEEECCCCCcceecC---HHHHHHHHHHcCCEEEEECCCCccccC--C
Confidence            653       389999999876      7999999999999998866   999999999999999999999764331  1


Q ss_pred             CcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCC
Q 009517          322 KFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSP  400 (533)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~  400 (533)
                      +   + .    +   ..|   +++.|++|.++|..+.+.||+++  .++++.+.+...+. .....++..+..+...|+ 
T Consensus       193 p---~-~----~---gaD---ivv~S~sK~l~g~~~~~gG~vv~--~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~L~-  255 (388)
T PRK07811        193 P---L-A----L---GAD---VVVHSTTKYIGGHSDVVGGALVT--NDEELDEAFAFLQNGAGAVPGPFDAYLTLRGLK-  255 (388)
T ss_pred             c---h-h----h---CCc---EEEecCceeecCCCCcEEEEEEE--CCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccC-
Confidence            1   1 1    1   234   88999999995433467899887  25677776665544 334455555555554443 


Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Q 009517          401 PKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGIT  440 (533)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~  440 (533)
                                   .+....++..++...+.+.|++.|++.
T Consensus       256 -------------tl~~R~~~~~~na~~la~~L~~~p~v~  282 (388)
T PRK07811        256 -------------TLAVRMDRHSENAEAVAEFLAGHPEVS  282 (388)
T ss_pred             -------------cHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence                         233444556677888888888876654

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.90  E-value=1.6e-21  Score=203.28  Aligned_cols=380  Identities=13%  Similarity=0.057  Sum_probs=233.1

Q ss_pred             chHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhc
Q 009517           75 EIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQ  154 (533)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~  154 (533)
                      .++.++++...++.||++      +||+..|....                      ..+++    ++++++++.+++.+
T Consensus        47 ~~i~~a~G~~l~D~dG~~------ylD~~~g~~~~----------------------~lGh~----~p~v~~Ai~~ql~~   94 (464)
T PRK06938         47 LALKRARGIYVEDVEGRQ------FIDCLAGAGTL----------------------ALGHN----HPVVIEAIQQVLAD   94 (464)
T ss_pred             ceEEeccccEEEeCCCCE------EEEccCCcccc----------------------ccCCC----CHHHHHHHHHHHHh
Confidence            366778888888888888      77776554322                      11222    68899999999874


Q ss_pred             CCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCC-CCCEEEc-CChHHHHHHHHHHhccCCC-CeEEEcCCcCcchHHH
Q 009517          155 IPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPAD-PNDIFLT-DGASPAVHMMMQLLIRSEN-DGILCPIPQYPLYSAS  231 (533)
Q Consensus       155 ~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~-~~~i~~t-~G~~~al~~~~~~l~~~~g-d~Vlv~~p~~~~~~~~  231 (533)
                      ........|     ..+.+..+|+.+.+....... .+.++++ ++|++|++.+++..+..+| .+|+....+|++....
T Consensus        95 ~~~~~~~~~-----~~~~~~~la~~L~~~~p~~~~~~~~v~f~~~SGSEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~  169 (464)
T PRK06938         95 ELPLHTLDL-----TTPVKDQFVQDLFASLPEAFAREAKIQFCGPTGTDAVEAALKLVKTATGRSTVLSFQGGYHGMSQG  169 (464)
T ss_pred             hhccccccc-----CCHHHHHHHHHHHHhCcccccccceEEEeCCCcHHHHHHHHHHHHHhhCCCeEEEECCccCCccHH
Confidence            211000011     123334455555432211111 1356564 7999999999998863344 6799999999997654


Q ss_pred             HHHh-CC------------eEEEEecCCC--CCCC--------CCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccC-C
Q 009517          232 IALH-GG------------TLVPYYLDEA--TGWG--------LETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV-L  287 (533)
Q Consensus       232 ~~~~-g~------------~~~~v~~~~~--~~~~--------ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~-~  287 (533)
                      +... |.            .+..++....  ..++        .+++.+++.+.+......++.+||+...+.-.|++ +
T Consensus       170 als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p  249 (464)
T PRK06938        170 ALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPA  249 (464)
T ss_pred             HHhhcCCccccccCCCCCCCcEEeCCCccccccccCchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCC
Confidence            4332 10            1222322111  0011        13567777776432111257888887666656764 5


Q ss_pred             CHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEec
Q 009517          288 AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTG  367 (533)
Q Consensus       288 s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~  367 (533)
                      +++.+++|.++|++||+++|+||++++|...|.  +.     ..+..++.||     +.+++|.++  .|+++|.+++  
T Consensus       250 ~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~--~~-----a~e~~gv~PD-----iv~~gKglg--gG~PlsAv~~--  313 (464)
T PRK06938        250 PIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGK--MF-----AFEHAGIIPD-----VVVLSKAIG--GSLPLAVVVY--  313 (464)
T ss_pred             CHHHHHHHHHHHHHcCCEEEEeccccCCCcCcH--HH-----HHHhcCCCCC-----EEEeecccc--CCCceEEEee--
Confidence            688899999999999999999999999866553  22     2222334788     667899995  4899999997  


Q ss_pred             CCHHHHHHHHHh-hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCceEe
Q 009517          368 FSAEVREQIYKV-ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL----EGITCN  442 (533)
Q Consensus       368 ~~~~~~~~l~~~-~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~  442 (533)
                       .+++ +.+... ...|++.++++++++.+.|+           ..+ .+.+.++.+++.++|.+.|+++    |.+.-+
T Consensus       314 -~~~~-~~~~~~~~~~T~~gnpla~Aaa~a~L~-----------~l~-~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~V  379 (464)
T PRK06938        314 -REWL-DTWQPGAHAGTFRGNQMAMAAGSATLR-----------YIK-EHRLAEHAAAMGERLREHLRQLQRDYPQLGDV  379 (464)
T ss_pred             -hhHh-hccCCCCCCCCCCcCHHHHHHHHHHHH-----------HHH-HhHHHHHHHHHHHHHHHHHHHHHHhCCCeeee
Confidence             6664 444322 23788999999999999884           111 1345566666667777777654    445667


Q ss_pred             cCCceeEEecccCCCHHHHHHHHhcCCC--ChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHH
Q 009517          443 KAEGAMYLFPRIQLPEKAIKAAEAEKTV--PDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVT  518 (533)
Q Consensus       443 ~~~gg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~  518 (533)
                      +..|.|+.+ .+..+....+........  ....++ ..+.++||++.++..++     +.+|+.+.  +++++|+++++
T Consensus       380 rG~Glm~gi-e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Gll~~~~g~~~-----~~l~~~Ppl~it~~eid~~~~  452 (464)
T PRK06938        380 RGRGLMLGV-EIVDPQGEPDALGHPPANGELASLIQ-RECLRRGLILELGGRHG-----SVVRFLPPLIITAEQIDEVAE  452 (464)
T ss_pred             eccceEEEE-EeccCcccccccccCCccHHHHHHHH-HHHHHCCeEEeecCCCC-----CEEEEECCCccCHHHHHHHHH
Confidence            777766543 232111000000000000  012233 34456899998743232     37999864  89999999999


Q ss_pred             HHHHHHHHHH
Q 009517          519 RLTDFHKNFM  528 (533)
Q Consensus       519 ~l~~~l~~~~  528 (533)
                      +++++++++.
T Consensus       453 ~l~~~l~~~~  462 (464)
T PRK06938        453 IFAEAVAAAV  462 (464)
T ss_pred             HHHHHHHHHh
Confidence            9999998754

>PRK05965 hypothetical protein; Provisional

Probab=99.90  E-value=1.1e-21  Score=204.49  Aligned_cols=370  Identities=14%  Similarity=0.092  Sum_probs=235.6

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      ++.++++...++.||++      +||+..|....                      ..+++    ++++++++.+++.+.
T Consensus        31 ~i~~a~G~~l~D~dG~~------ylD~~~g~~~~----------------------~lGh~----~p~i~~Ai~~q~~~~   78 (459)
T PRK05965         31 VLASAKGATLTDASGHQ------LLDAFAGLWCV----------------------NVGYG----QESIVEAAAEQMREL   78 (459)
T ss_pred             eEEeeeEeEEEECCCCE------EEECcccHHhc----------------------cCCCC----CHHHHHHHHHHHHhc
Confidence            45666666667777777      77876554321                      11122    689999999999863


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC------CC-CeEEEcCCcCcch
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS------EN-DGILCPIPQYPLY  228 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~------~g-d~Vlv~~p~~~~~  228 (533)
                      ..  ...+..  -..+.+..+|+.+.+...  ...++++++++|++|++.+++.++..      ++ .+|+....+|++.
T Consensus        79 ~~--~~~~~~--~~~~~~~~lae~L~~~~p--~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~  152 (459)
T PRK05965         79 PY--ATGYFH--FGSEPAIRLAAKLAERAP--GSLNHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGS  152 (459)
T ss_pred             CC--cccccc--cCCHHHHHHHHHHHhhCC--CCcCEEEEeCChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcc
Confidence            21  111100  012333445555554322  23468999999999999999987521      22 5799999999997


Q ss_pred             HHHHHHh-CCe------------EEEEecCC--CCCCCCC--------HHHHHHHHHHHHhcCCCeeEEEEeCCCCCCcc
Q 009517          229 SASIALH-GGT------------LVPYYLDE--ATGWGLE--------TSEVKKQLEAAKAKGITVRALVVINPGNPTGQ  285 (533)
Q Consensus       229 ~~~~~~~-g~~------------~~~v~~~~--~~~~~ld--------~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~  285 (533)
                      ....... +..            +..++...  ...+.-|        ++.+++.+...  ...++.+||++..+...|+
T Consensus       153 t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~--~~~~iAAvIvEPiqg~gG~  230 (459)
T PRK05965        153 SSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVAEL--GADNVAAFFCEPIQGSGGV  230 (459)
T ss_pred             cHHHHHhcCCchhhcccCCCCCCCEEcCCCcccccccCCChHHHHHHHHHHHHHHHHhc--CCCceEEEEEeccccCCCC
Confidence            6432222 210            11222110  0011123        25667767542  1136888988877777776


Q ss_pred             -CCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCC-CeeEEE
Q 009517          286 -VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYM  363 (533)
Q Consensus       286 -~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G-~riG~v  363 (533)
                       +++++.+++|.++|++||+++|+||++++|...|.  +..     .+..++.||     +.+|+|.++  .| +++|.+
T Consensus       231 ~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~--~~a-----~~~~gv~PD-----iv~~gKgl~--gG~~Pi~av  296 (459)
T PRK05965        231 IVPPKGWLKAMREACRELGILFVADEVITGFGRTGP--LFA-----CEAEGVVPD-----LMTVAKGLT--SGYVPMGAV  296 (459)
T ss_pred             ccCCHHHHHHHHHHHHHcCCEEEEechhccCccCch--hhh-----HhhcCCCCC-----eEEechhhc--cCCcceeEE
Confidence             56778899999999999999999999999876663  222     222233788     667899995  48 599999


Q ss_pred             EEecCCHHHHHHHHH--------hhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009517          364 EVTGFSAEVREQIYK--------VASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNS  435 (533)
Q Consensus       364 ~~~~~~~~~~~~l~~--------~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  435 (533)
                      ++   ++++++.+..        ....|++.++++++++.+.|+           ..+ .+.+.++.+++.++|.+.|++
T Consensus       297 ~~---~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~-----------~l~-~~~l~~~~~~~g~~l~~~l~~  361 (459)
T PRK05965        297 LM---SDHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLR-----------LYH-EGGLLANGQKAGPRFAAGLDA  361 (459)
T ss_pred             EE---cHHHHHHHhccccccccccccCCCCCCHHHHHHHHHHHH-----------HHH-hccHHHHHHHHHHHHHHHHHh
Confidence            98   9999987753        123678999999999998884           111 134556667777777777766


Q ss_pred             C---CCceEecCCceeEEecccCCCHHHHHHHHhcCCCC----hHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec-
Q 009517          436 L---EGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVP----DAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-  507 (533)
Q Consensus       436 ~---~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-  507 (533)
                      +   |.+.-++..|.|+.+ .+.....     .+.....    ...+ ...+.++||++.+.       +.+.+|+++. 
T Consensus       362 l~~~~~v~~vrG~Gl~~gi-e~~~~~~-----~~~~~~~~~~~~~~i-~~~~~~~Gll~~~~-------g~~~i~~~PpL  427 (459)
T PRK05965        362 LRAHPLVGDVRGRGLLGAL-ELVADKA-----TKTPFDAALDPADRI-FDRAYANGLVFRAF-------GDGVLGFAPAL  427 (459)
T ss_pred             hccCCCEEEEeecceEEEE-EEecccc-----ccCCCCchhHHHHHH-HHHHHhCCeEEEec-------CCcEEEEECCC
Confidence            4   445557777766543 2211000     0000000    1223 34456789999852       2347899975 


Q ss_pred             -CCcCcHHHHHHHHHHHHHHHH
Q 009517          508 -PQEDKIPAIVTRLTDFHKNFM  528 (533)
Q Consensus       508 -~~~e~i~~~~~~l~~~l~~~~  528 (533)
                       +++++|++++++|.++++++.
T Consensus       428 ~it~~ei~~~~~~l~~~l~~~~  449 (459)
T PRK05965        428 CCTEGEFDLIFERTRKTLDDVL  449 (459)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHh
Confidence             899999999999999998763

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=99.90  E-value=2.5e-21  Score=197.96  Aligned_cols=220  Identities=14%  Similarity=0.172  Sum_probs=162.6

Q ss_pred             cccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcc----hHHHHHHhC
Q 009517          161 GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPL----YSASIALHG  236 (533)
Q Consensus       161 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~----~~~~~~~~g  236 (533)
                      ..|..+. ..+|++.++++.+        .+.++++++|++|+..++.+++ ++||+|+++.+.|..    +...+...|
T Consensus        49 ~r~~~p~-~~~le~~la~l~g--------~~~~~~~~sG~~Ai~~al~al~-~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g  118 (380)
T TIGR01325        49 SRYANPT-VAAFEERIAALEG--------AERAVATATGMSAIQAALMTLL-QAGDHVVASRSLFGSTVGFISEILPRFG  118 (380)
T ss_pred             ecCCCch-HHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHHh-CCCCEEEEecCCcchHHHHHHHHHHHhC
Confidence            3455443 7889999998864        3578889999999999999888 799999999988865    334566789


Q ss_pred             CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEcccccccc
Q 009517          237 GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENV  316 (533)
Q Consensus       237 ~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~  316 (533)
                      .++..++.+       |++.+++++++      ++++|++++|+||+|.+.+   +++|.++|+++|+++|+|++|....
T Consensus       119 ~~v~~v~~~-------d~~~l~~~i~~------~tklV~le~p~np~g~~~d---l~~I~~la~~~gi~livD~a~~~~~  182 (380)
T TIGR01325       119 IEVSFVDPT-------DLNAWEAAVKP------NTKLVFVETPSNPLGELVD---IAALAELAHAIGALLVVDNVFATPV  182 (380)
T ss_pred             CEEEEECCC-------CHHHHHHhcCC------CceEEEEECCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCcccc
Confidence            998888753       68999988865      7999999999999999987   8999999999999999999997643


Q ss_pred             ccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCee-EEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHH
Q 009517          317 YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRG-GYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILA  394 (533)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~ri-G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~  394 (533)
                      +.  .+   +     ++   ..|   |++.|++|.+ +.+|.++ |++++   ++++++.+..... .....++..+.++
T Consensus       183 ~~--~p---l-----~~---g~D---ivv~S~sK~l-~g~g~~~gG~vv~---~~~~~~~l~~~~~~~g~~~~p~~a~~~  242 (380)
T TIGR01325       183 LQ--QP---L-----KL---GAD---VVVYSATKHI-DGQGRVMGGVIAG---SEELMAEVAVYLRHTGPAMSPFNAWVL  242 (380)
T ss_pred             cC--Cc---h-----hh---CCC---EEEeecccee-cCCCCeEEEEEEe---CHHHHHHHHHHHHhhCCCCCHHHHHHH
Confidence            31  11   1     11   234   7788999999 5477776 67766   7888888776543 3333344544444


Q ss_pred             HHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Q 009517          395 SLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGIT  440 (533)
Q Consensus       395 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~  440 (533)
                      ...+              +.+....++..++++.+.+.|++.|++.
T Consensus       243 l~~l--------------~tl~~r~~~~~~~a~~la~~L~~~p~v~  274 (380)
T TIGR01325       243 LKGL--------------ETLSLRMQKQFDSALAIAEWLQAQPQVQ  274 (380)
T ss_pred             Hhcc--------------CcHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence            3333              2234455566777888888898876654

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=99.90  E-value=1.6e-21  Score=202.46  Aligned_cols=369  Identities=13%  Similarity=0.069  Sum_probs=229.4

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      ++.++++...++.||++      ++|+..|....                      ..+++    ++++++++.+++.+.
T Consensus        39 ~~~~a~G~~l~D~dG~~------ylD~~~g~~~~----------------------~lGh~----~p~v~~Ai~~ql~~~   86 (441)
T PRK05769         39 VIERGEGVWVEDVDGNV------YLDFNAGIAVT----------------------NVGHA----HPKVVKAVKEQAEKF   86 (441)
T ss_pred             eEEecceEEEEeCCCCE------EEECCCchhhc----------------------ccCCC----CHHHHHHHHHHHHhc
Confidence            56677777777778777      88887665332                      11222    688999999999863


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCC-CeEEEcCCcCcchHHHHHH
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-DGILCPIPQYPLYSASIAL  234 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vlv~~p~~~~~~~~~~~  234 (533)
                      ..    ...... ..+....+|+.+.+..+. -..++|+++++|++|++.+++..+...| ++|+....+|++....+..
T Consensus        87 ~~----~~~~~~-~~~~~~~lAe~L~~~~p~-~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls  160 (441)
T PRK05769         87 LH----YSLTDF-YYEPAVELAERLVEIAPG-GFEKKVFFTNSGTESNEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLS  160 (441)
T ss_pred             cC----ccCccc-CCHHHHHHHHHHHHhCCC-CCCCEEEECCchHHHHHHHHHHHHHHhCCCeEEEECCCcCCccHHHHH
Confidence            21    111100 123445566666543221 1236899999999999999998763344 6789899999997754433


Q ss_pred             h-CC-------------eEEEEecCCCC--CCC-CC--------HHHHHHHHHHHHhcCCCeeEEEEeCCCCCCcc-CCC
Q 009517          235 H-GG-------------TLVPYYLDEAT--GWG-LE--------TSEVKKQLEAAKAKGITVRALVVINPGNPTGQ-VLA  288 (533)
Q Consensus       235 ~-g~-------------~~~~v~~~~~~--~~~-ld--------~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~-~~s  288 (533)
                      . +.             .+..++....-  .|. -|        ++.+++.+.+....+.++.+|++...+...|. .++
T Consensus       161 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~  240 (441)
T PRK05769        161 LTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPP  240 (441)
T ss_pred             hcCCCcccccCCCCCCCCeEEeCCCccccccccCCchHHHHHHHHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCC
Confidence            3 21             12222221100  011 11        23344422211001236778887766766777 456


Q ss_pred             HHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecC
Q 009517          289 EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGF  368 (533)
Q Consensus       289 ~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~  368 (533)
                      ++.|++|.++|++||+++|+||++++|...|.  ...+..+  .+   .||     +.+|||.+ | .|+++|++++   
T Consensus       241 ~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~--~~a~~~~--gv---~pD-----ivt~~K~l-~-~G~p~gav~~---  303 (441)
T PRK05769        241 KNFFKELRKLADKYGILLIDDEVQTGMGRTGK--MFAIEHF--GV---EPD-----IITLAKAI-A-GGLPLGAVIG---  303 (441)
T ss_pred             HHHHHHHHHHHHHcCCEEEEechhhCCCcccc--eehhhcc--CC---CCC-----EEEEcccc-c-CCcccEEEEE---
Confidence            78899999999999999999999999766553  2221111  22   567     33689999 4 5899999998   


Q ss_pred             CHHHHHHHHHhhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCceEecC
Q 009517          369 SAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL----EGITCNKA  444 (533)
Q Consensus       369 ~~~~~~~l~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~  444 (533)
                      +++++..+......+++.++++++++.+.|+           ..++  .+.++.+++.++|++.|+++    +.+..++.
T Consensus       304 ~~~i~~~~~~~~~~T~~g~p~~~aaa~a~L~-----------~l~~--~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg  370 (441)
T PRK05769        304 RAELMFLPPGSHANTFGGNPVAAAAALATLE-----------ELEE--GLLENAQKLGEYLRKELKELKEKYEFIGDVRG  370 (441)
T ss_pred             ehhhhhcCCCCCCCCCCcCHHHHHHHHHHHH-----------HHHH--HHHHHHHHHHHHHHHHHHHHHHhCCCeeeeec
Confidence            8888754432334677889999999988884           2232  55667777777888877664    33344566


Q ss_pred             CceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHH
Q 009517          445 EGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTD  522 (533)
Q Consensus       445 ~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~  522 (533)
                      .|.++.+ .+..+..      .........+. ..+.++||++.|.       +.+.+|+++.  +++++|+++++++++
T Consensus       371 ~G~~~~i-~~~~~~~------~~~~~~~~~~~-~~~~~~Gil~~~~-------~~~~lr~~p~l~~t~~~id~~~~~l~~  435 (441)
T PRK05769        371 LGLMIGV-ELVKDRK------EPDPKLRDKVL-YEAFKRGLLLLGA-------GKSAIRIIPPLIITEEEADIGLEILEE  435 (441)
T ss_pred             ceEEEEE-EeccCCc------cccHHHHHHHH-HHHHhCCcEEecC-------CCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            6655442 2221100      00000012233 4455689999752       2237899985  699999999999999


Q ss_pred             HHHHH
Q 009517          523 FHKNF  527 (533)
Q Consensus       523 ~l~~~  527 (533)
                      +++++
T Consensus       436 ~l~~~  440 (441)
T PRK05769        436 AIKEL  440 (441)
T ss_pred             HHHHh
Confidence            98764

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.90  E-value=2.6e-21  Score=201.21  Aligned_cols=367  Identities=15%  Similarity=0.122  Sum_probs=236.3

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      .+.++++...++.||++      +||+..|....                      ..+++    ++++++++.+++.+.
T Consensus        39 ~i~~a~G~~l~D~dG~~------ylD~~~g~~~~----------------------~lGh~----~p~v~~Ai~~ql~~~   86 (453)
T PRK06943         39 PVARGEGAWLYDRDGRR------YLDAISSWWVN----------------------LFGHA----NPRINAALKDQLDTL   86 (453)
T ss_pred             eEEecccCEEEeCCCCE------EEEcchHHHHh----------------------cCCCC----CHHHHHHHHHHHHhc
Confidence            45667777777778777      88876553221                      11111    689999999999864


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc------CCC-CeEEEcCCcCcch
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR------SEN-DGILCPIPQYPLY  228 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~------~~g-d~Vlv~~p~~~~~  228 (533)
                      .......|.     .+....+|+.+.+..+  ...+.++++++|++|++.+++..+.      .+| .+|+....+|++.
T Consensus        87 ~~~~~~~~~-----~~~~~~lAe~L~~~~p--~~~~~v~f~~sGseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~  159 (453)
T PRK06943         87 EHAMLAGCT-----HEPAIELAERLAALTG--GTLGHAFFASDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGE  159 (453)
T ss_pred             CCccccccC-----CHHHHHHHHHHHHhCC--CCCCEEEEeCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCC
Confidence            221111121     2334445555554332  1235899999999999999998731      123 6799999999986


Q ss_pred             HHHHHHh-CC------------eEEEEecCCCC--CCCC--------CHHHHHHHHHHHHhcCCCeeEEEEeC-CCCCCc
Q 009517          229 SASIALH-GG------------TLVPYYLDEAT--GWGL--------ETSEVKKQLEAAKAKGITVRALVVIN-PGNPTG  284 (533)
Q Consensus       229 ~~~~~~~-g~------------~~~~v~~~~~~--~~~l--------d~~~l~~~i~~~~~~g~~~~~iil~~-p~NPtG  284 (533)
                      ....... |.            .+..++.....  .+..        +++.+++.+...   +.++.+||++. .+...|
T Consensus       160 t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~iAAviiEPvvqg~gG  236 (453)
T PRK06943        160 TIGALGVTDVALFKDAYDPLIRHAHVVASPDARGARPGETAADVAARALADVRRLFAER---AGKIAALIVEPLVQCAAG  236 (453)
T ss_pred             cHHhhcccCChhhhcccccCCCCCEEECCCCccccccCCCHHHHHHHHHHHHHHHHHhC---CCceEEEEEeccccccCC
Confidence            6433322 11            11122221100  0011        246677777532   34788888887 476677


Q ss_pred             c-CCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCC-CeeEE
Q 009517          285 Q-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG-KRGGY  362 (533)
Q Consensus       285 ~-~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G-~riG~  362 (533)
                      + .++++.+++|.++|++||+++|+||++++|...|.  +..     .+..++.||     +.+++|.++  .| +++|.
T Consensus       237 ~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~--~fa-----~~~~gv~PD-----ivt~gKgl~--gG~~Pi~a  302 (453)
T PRK06943        237 MAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGT--FFA-----CEQAGVWPD-----FLCLSKGIS--GGYLPLSL  302 (453)
T ss_pred             cccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcc--hhH-----HHhCCCCCC-----eEeeehhhc--cCcccceE
Confidence            7 56788899999999999999999999999866553  222     222234788     667899995  48 59999


Q ss_pred             EEEecCCHHHHHHHHH-------hhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009517          363 MEVTGFSAEVREQIYK-------VASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNS  435 (533)
Q Consensus       363 v~~~~~~~~~~~~l~~-------~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  435 (533)
                      +++   .+++++.+..       ....|++.++++++++.+.|+.           .++ +.+.++.+++.++|.+.|++
T Consensus       303 v~~---~~ei~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~-----------i~~-~~l~~~~~~~G~~l~~~L~~  367 (453)
T PRK06943        303 VLS---RDAIFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDL-----------FAE-DDVLARNARKSARLRAALAP  367 (453)
T ss_pred             EEE---cHHHHHhhcccCccCCccCCCCCCCCHHHHHHHHHHHHH-----------HHh-cCHHHHHHHHHHHHHHHHHH
Confidence            998   8999887753       1336788999999999998841           121 34556666667777777765


Q ss_pred             C---CCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEe--cCCc
Q 009517          436 L---EGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTI--LPQE  510 (533)
Q Consensus       436 ~---~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~--~~~~  510 (533)
                      +   +++.-++..|.|+.+ .+..+...       .......+. ..+.++||++.+.       + +.+||++  .+++
T Consensus       368 l~~~~~v~~vrG~Gl~~gv-el~~~~~~-------~~~~~~~i~-~~~~~~Gll~~~~-------g-~~l~~~Ppl~it~  430 (453)
T PRK06943        368 LAAHPQVRHLRQRGTIFAF-DVALDGDA-------ARTFSRRFF-EAALERELLLRPI-------G-TTVYLMPPYVLDD  430 (453)
T ss_pred             HhcCCCEEeEeccccEEEE-EEccCCCc-------chHHHHHHH-HHHHHCCcEEEec-------C-CEEEEeCCCcCCH
Confidence            4   566667777766543 23211000       000012233 4456789999862       1 2689996  4999


Q ss_pred             CcHHHHHHHHHHHHHHHHHH
Q 009517          511 DKIPAIVTRLTDFHKNFMDK  530 (533)
Q Consensus       511 e~i~~~~~~l~~~l~~~~~~  530 (533)
                      ++|++++++|+++++++..+
T Consensus       431 ~eid~~~~~l~~al~~~~~~  450 (453)
T PRK06943        431 DEIAWLAERTRATLDATLAE  450 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999987543

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=99.90  E-value=3e-21  Score=200.75  Aligned_cols=372  Identities=14%  Similarity=0.050  Sum_probs=230.6

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      ++.++++...++.||++      +||+..|....                      ..+++    ++++++++.+++.+.
T Consensus        38 ~~~~~~G~~l~D~dG~~------ylD~~~g~~~~----------------------~lGh~----~p~i~~Ai~~ql~~~   85 (457)
T PRK05639         38 VPKRGFGALIEDVDGNV------FIDFLAGAAAA----------------------STGYS----HPKLVKAVQEQVALI   85 (457)
T ss_pred             eEEeeecCEEEeCCCCE------EEECCcCHHhh----------------------ccCCC----CHHHHHHHHHHHHhc
Confidence            56778888778888888      77876654221                      11111    688999999998863


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCC-CeEEEcCCcCcchHHHHHH
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-DGILCPIPQYPLYSASIAL  234 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vlv~~p~~~~~~~~~~~  234 (533)
                      .. ....|...    +....+++.+.+..+  ...++++++++|+||++.+++..+...| .+|+....+|++....+..
T Consensus        86 ~~-~~~~~~~~----~~~~~lae~L~~~~p--~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s  158 (457)
T PRK05639         86 QH-SMIGYTHS----ERAIRVAEKLAEISP--IENPKVLFGLSGSDAVDMAIKVSKFSTRRPWILAFIGAYHGQTLGATS  158 (457)
T ss_pred             cc-cccCccCC----HHHHHHHHHHHhhCC--CCcCEEEEeCchHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHH
Confidence            21 11123222    233334555543322  2236899999999999999998863344 6788899999996654333


Q ss_pred             h-CC-------------eEEEEecCCCC--CCC----CCHH--------HHHHHHHHHHhcCCCeeEEEEeCCCCCCcc-
Q 009517          235 H-GG-------------TLVPYYLDEAT--GWG----LETS--------EVKKQLEAAKAKGITVRALVVINPGNPTGQ-  285 (533)
Q Consensus       235 ~-g~-------------~~~~v~~~~~~--~~~----ld~~--------~l~~~i~~~~~~g~~~~~iil~~p~NPtG~-  285 (533)
                      . |.             .+..+|.....  .|.    -|.+        .+++.+......+.++.+||++..+...|+ 
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~  238 (457)
T PRK05639        159 VAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIV  238 (457)
T ss_pred             HcCCCcccccCCCCCCCCceEeCCCccccccccccccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCc
Confidence            2 21             12233322110  000    0232        233333221111237888888877776787 


Q ss_pred             CCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEE
Q 009517          286 VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV  365 (533)
Q Consensus       286 ~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~  365 (533)
                      .++++.+++|.++|++||+++|+||++++|...|.  .     +..+..++.||     +.+|+|.++  .|+++|++++
T Consensus       239 ~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~--~-----~a~~~~gv~PD-----iv~~gK~l~--gG~pi~av~~  304 (457)
T PRK05639        239 VPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGK--W-----FASEWFEVKPD-----LIIFGKGVA--SGMGLSGVIG  304 (457)
T ss_pred             CCCHHHHHHHHHHHHHcCCEEEEechhhccCcCch--H-----HHHHhcCCCCC-----EEEechhhc--CCCcceeEEe
Confidence            56788899999999999999999999999755543  1     12222233678     444899995  4899999998


Q ss_pred             ecCCHHHHHHHHHhhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCceE
Q 009517          366 TGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL----EGITC  441 (533)
Q Consensus       366 ~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~  441 (533)
                         ++++++........+++.++++++++.+.|+           ..+ .+...++.+++.++|++.|+++    +.+.-
T Consensus       305 ---~~~i~~~~~~~~~~T~~g~p~~~aaa~a~l~-----------~l~-~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~  369 (457)
T PRK05639        305 ---RKELMDLTSGSALLTPAANPVISAAAEATLE-----------IIE-EENLLKNALKVGEFIKKRLLEMKESFEVIGD  369 (457)
T ss_pred             ---hHHHHhhcCCCcccCCCcCHHHHHHHHHHHH-----------HHH-HccHHHHHHHHHHHHHHHHHHHHHhCCCEEe
Confidence               8998873221112567889999988888874           111 1344555666777777777663    33455


Q ss_pred             ecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHH
Q 009517          442 NKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTR  519 (533)
Q Consensus       442 ~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~  519 (533)
                      ++..|.|+.+ .+..+...      ........++ ..+.++||++.+..     .+.+.+|+++.  +++++|++++++
T Consensus       370 VrG~Gl~~gv-e~~~~~~~------~~~~~~~~~~-~~~~~~Gv~~~~~g-----~~~~~lr~~Ppl~it~~~id~~~~~  436 (457)
T PRK05639        370 VRGKGLMIGV-EIVKENGK------PDPELTGKIC-WRAFELGLILPSYG-----MFGNVIRITPPLVITKEIAEKGLEI  436 (457)
T ss_pred             eccceeEEEE-EEecCCCC------CCHHHHHHHH-HHHHhCCeEEeecC-----CCCCEEEEeCCCccCHHHHHHHHHH
Confidence            6777766553 22211100      0000012233 44556899997631     11238999995  899999999999


Q ss_pred             HHHHHHHHH
Q 009517          520 LTDFHKNFM  528 (533)
Q Consensus       520 l~~~l~~~~  528 (533)
                      |++++++..
T Consensus       437 l~~~l~~~~  445 (457)
T PRK05639        437 MERAIKDAL  445 (457)
T ss_pred             HHHHHHHHH
Confidence            999998764

>PRK06062 hypothetical protein; Provisional

Probab=99.90  E-value=2.8e-21  Score=201.07  Aligned_cols=368  Identities=14%  Similarity=0.131  Sum_probs=233.0

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      ++.++++...++.||++      +||+..|....                      ..+++    ++++++++.+++.+.
T Consensus        38 ~i~~a~G~~l~D~dG~~------ylD~~~g~~~~----------------------~lGh~----~p~v~~Ai~~q~~~~   85 (451)
T PRK06062         38 VIAGAEGSYVWDYEGRR------YLDFSSQLVNT----------------------NIGHQ----HPKVVAAIQEQAARL   85 (451)
T ss_pred             eEEeceeeEEEECCCCE------EEEcccCHHhh----------------------cCCCC----CHHHHHHHHHHHHhc
Confidence            56667777777778887      88876664322                      11222    688999999999873


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCC-CeEEEcCCcCcchHHHHHH
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-DGILCPIPQYPLYSASIAL  234 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vlv~~p~~~~~~~~~~~  234 (533)
                      ..     +.+.. ..+.+..+|+.+.+...  ...++|+++++|++|++.+++..+..+| .+|+....+|++....+..
T Consensus        86 ~~-----~~~~~-~~~~~~~lae~L~~~~p--~~~~~v~f~~SGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als  157 (451)
T PRK06062         86 CT-----VAPAH-ANDARSEAARLIAERAP--GDLSKVFFTNGGADANEHAVRMARLHTGRPKVLSAYRSYHGGTGSAIN  157 (451)
T ss_pred             CC-----cCCcc-CCHHHHHHHHHHHHhCC--CCCCEEEEcCChHHHHHHHHHHHHHhhCCceEEEEeCCCCCCCHHHHh
Confidence            22     11111 23444555555554322  2246899999999999999998863344 6799999999997654443


Q ss_pred             h-CCe-----------EEEEecCCC--CCCC--CC-------HHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccC-CCHH
Q 009517          235 H-GGT-----------LVPYYLDEA--TGWG--LE-------TSEVKKQLEAAKAKGITVRALVVINPGNPTGQV-LAEE  290 (533)
Q Consensus       235 ~-g~~-----------~~~v~~~~~--~~~~--ld-------~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~-~s~~  290 (533)
                      . +..           +..++....  ..|.  -|       ++.+++.++..  ...++.+||++..+.-.|.+ ++++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~iAaviiEPv~g~gG~~~p~~~  235 (451)
T PRK06062        158 LTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERALAHLERVIELE--GPSTIAAILLESVPGTAGILVPPPG  235 (451)
T ss_pred             hcCCcccccCCCCCCCCEEeCCCCccccccCCCChHHHHHHHHHHHHHHHHhc--CCCceEEEEEccccCCCCcccCCHH
Confidence            2 211           111111110  0011  12       56677777531  11367888888666666765 5788


Q ss_pred             HHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCC-CeeEEEEEecCC
Q 009517          291 NQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFS  369 (533)
Q Consensus       291 ~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G-~riG~v~~~~~~  369 (533)
                      .+++|.++|++||+++|+||++++|...|.  .     +..+..++.||     +.+|+|.++  .| +++|.+++   .
T Consensus       236 yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~--~-----~a~~~~gv~PD-----i~t~gK~lg--gG~~Pigav~~---~  298 (451)
T PRK06062        236 YLAGVRELCDRHGIVLIADEVMAGFGRTGK--W-----FAIEHFGVVPD-----LITFAKGVN--SGYVPLGGVAI---S  298 (451)
T ss_pred             HHHHHHHHHHHcCCEEEeeccccCCCcCcH--H-----HHHHhcCCCCC-----eeeechhhh--cCCcCcEEEEE---c
Confidence            899999999999999999999999755442  1     12222333688     567999994  47 49999998   8


Q ss_pred             HHHHHHHHHh---hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHH-HHHHHHHhcC----CCceE
Q 009517          370 AEVREQIYKV---ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRA-KTLEDAFNSL----EGITC  441 (533)
Q Consensus       370 ~~~~~~l~~~---~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~L~~~----~g~~~  441 (533)
                      +++++.+...   ...|++.++++++++.+.|+           ..+. +.+.++.+++. +++.+.|+++    +.+..
T Consensus       299 ~~i~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~-----------~l~~-~~l~~~~~~~G~~~l~~~L~~l~~~~~~v~~  366 (451)
T PRK06062        299 EAIAATFADRPYPGGLTYSGHPLACAAAVATIN-----------AMEE-EGIVENAARIGAEVLGPGLRELAERHPSVGE  366 (451)
T ss_pred             HHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHH-----------HHHh-cCHHHHHHHHHHHHHHHHHHHHHhcCCcEEe
Confidence            8998887532   23578899999999998884           2211 23445555554 3566666553    43455


Q ss_pred             ecCCceeEEecccCCCHHHHHHHHhcCCC-------ChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEe--cCCcCc
Q 009517          442 NKAEGAMYLFPRIQLPEKAIKAAEAEKTV-------PDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTI--LPQEDK  512 (533)
Q Consensus       442 ~~~~gg~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~--~~~~e~  512 (533)
                      ++..|.|+.+ .+..+..     ......       ....+ ...+.++||++.+.      .  +.+||++  .+++++
T Consensus       367 vrG~Gl~~gv-e~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~l~~~Gvl~~~~------~--~~lrl~ppl~~t~~e  431 (451)
T PRK06062        367 VRGLGVFWAL-ELVADRE-----TREPLAPYGASSAAMAAV-KAACKERGLLPFVN------G--NRIHVVPPCTVTEDE  431 (451)
T ss_pred             EeccccEEEE-EEccccc-----ccCCCcccchhhHHHHHH-HHHHHHCCcEEeec------C--CEEEEECCccCCHHH
Confidence            7777766543 2221100     000000       01233 34456789998751      1  2789988  489999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 009517          513 IPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       513 i~~~~~~l~~~l~~~~~  529 (533)
                      |++++++++++++++..
T Consensus       432 id~~~~~l~~~l~~~~~  448 (451)
T PRK06062        432 VREGLAILDAALAVADA  448 (451)
T ss_pred             HHHHHHHHHHHHHHhhh
Confidence            99999999999987653

>PRK07046 aminotransferase; Validated

Probab=99.90  E-value=6e-22  Score=205.82  Aligned_cols=366  Identities=14%  Similarity=0.053  Sum_probs=228.7

Q ss_pred             ccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHH
Q 009517           73 RGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQIL  152 (533)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~  152 (533)
                      .+.++.++++...++.||++      +||+..|.-..                    ++...      ++.+++++.+++
T Consensus        57 ~p~~~~~a~G~~v~D~DG~~------yiD~~~g~g~~--------------------~lGh~------~p~i~~Av~~q~  104 (453)
T PRK07046         57 FPLFVAEARGARFTDVDGHR------YDDFCLGDTGA--------------------MFGHS------PAPVARALAEQA  104 (453)
T ss_pred             CCCeEEeeeeCEEEeCCCCE------EEEeccccccc--------------------ccCCC------CHHHHHHHHHHH
Confidence            33467888888888888888      88887665221                    11222      689999999999


Q ss_pred             hcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCC-CeEEEcCCcCcchHHH
Q 009517          153 DQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-DGILCPIPQYPLYSAS  231 (533)
Q Consensus       153 ~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vlv~~p~~~~~~~~  231 (533)
                      .+..   ...+ +    .+....+|+.+.+..    ..+++.++++|+||.+.+++..+...| ++|+....+|+++...
T Consensus       105 ~~~~---~~~~-~----~~~~~~lAe~l~~~~----~~~~v~F~nSGtEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~  172 (453)
T PRK07046        105 RRGL---TTML-P----SEDAAWVGEELARRF----GLPYWQVATTATDANRFVLRWARAVTGRPKILVFNGCYHGTVDD  172 (453)
T ss_pred             HhCC---CCCC-C----CHHHHHHHHHHHHHh----CCCEEEEECCHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCcHH
Confidence            8631   1111 2    234444555555443    257999999999999999998864344 6799999999997532


Q ss_pred             HHH--hCCeEEE------EecCCCC-----CCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCcc-CCCHHHHHHHHH
Q 009517          232 IAL--HGGTLVP------YYLDEAT-----GWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ-VLAEENQRAIVD  297 (533)
Q Consensus       232 ~~~--~g~~~~~------v~~~~~~-----~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~-~~s~~~l~~i~~  297 (533)
                      ...  .+.....      ++.....     .| -|++.+++.+..     .++.+||++..+...|. .++++.+++|.+
T Consensus       173 ~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-nd~~~l~~~l~~-----~~vAavi~EPi~g~~G~~~p~~~fl~~lr~  246 (453)
T PRK07046        173 VFVDLVDGRPVQRPGLLGQVHDLTATTRVVEF-NDLAALEAALAD-----GDVAAVLAEPAMTNIGMVLPEPGFHEALRE  246 (453)
T ss_pred             hHhhccCCCCCCCCCCCCCCccccCceEeeCC-CCHHHHHHHhCC-----CCeEEEEECCCCCCCCCcCCCHHHHHHHHH
Confidence            221  1111000      0000000     11 178999988843     26888888765544565 556678999999


Q ss_pred             HHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHH
Q 009517          298 FCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY  377 (533)
Q Consensus       298 l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~  377 (533)
                      +|++||+++|+||+++ |..+-+ ..       .+..++.||     +.+|+|.++  .|+++|++++   .+++++.+.
T Consensus       247 lc~~~g~llI~DEV~t-fr~g~G-g~-------~~~~gv~PD-----i~t~gK~lg--gG~Pi~av~g---~~~i~~~~~  307 (453)
T PRK07046        247 LTRRYGTLLVIDETHT-ISSGPG-GY-------TRAHGLEPD-----FLVVGKPIA--GGVPCAVYGF---SAELAERAQ  307 (453)
T ss_pred             HHHHhCCEEEEEcccc-CccCCc-ch-------hHHhCCCcc-----ceeehhhhc--CCCcceeeee---hHHHHHHHh
Confidence            9999999999999998 433211 11       111123688     557999995  4899999988   999998886


Q ss_pred             Hh----------hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCceEec
Q 009517          378 KV----------ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNS----LEGITCNK  443 (533)
Q Consensus       378 ~~----------~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~g~~~~~  443 (533)
                      ..          ...|++.++++++++.+.|+..           + .+...++.+++.+.|++.|++    .+....+.
T Consensus       308 ~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l-----------~-~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~v~  375 (453)
T PRK07046        308 AAKASAPPGHSGIGTTLSANALAMAAMRATLAEV-----------M-TEAAYAHMLALAARLAAGLRAVIARHGLPWHVT  375 (453)
T ss_pred             hccccCCCCCceeCCCCcccHHHHHHHHHHHHHH-----------h-cccHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence            31          2357889999999999887521           1 123455555566666666654    32223355


Q ss_pred             CCceeEEecccC-CCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHH
Q 009517          444 AEGAMYLFPRIQ-LPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTD  522 (533)
Q Consensus       444 ~~gg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~  522 (533)
                      ..|.++.+.-.+ .+....+........-...++.. +.++||++.|.   +     +.+++++.+++++|+++++++++
T Consensus       376 g~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Gv~~~~~---~-----~~~~~~p~~t~~did~~~~~~~~  446 (453)
T PRK07046        376 RVGARVEFQFAPTPPRNGAEAAAALDPELEAALHLY-LLNRGVLITPF---H-----NMMLVCPATTAADVDRLVAAFDA  446 (453)
T ss_pred             EeCcEEEEEEeCCCCCCHHHHhcccCHHHHHHHHHH-HHHCCCEEecc---c-----CcEEEeCCCCHHHHHHHHHHHHH
Confidence            566654432111 11110000000000001233334 44589999862   1     15789988999999999999999


Q ss_pred             HHHHHH
Q 009517          523 FHKNFM  528 (533)
Q Consensus       523 ~l~~~~  528 (533)
                      +++++.
T Consensus       447 ~l~~~~  452 (453)
T PRK07046        447 CLGELL  452 (453)
T ss_pred             HHHHHh
Confidence            998754

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=99.90  E-value=3.3e-22  Score=203.47  Aligned_cols=311  Identities=15%  Similarity=0.142  Sum_probs=203.3

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcc------cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc--
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQG------IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR--  212 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G------~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--  212 (533)
                      |+.+++++.+.+..... ....+....+      +.++|+.++++++      .++++|++|+|+++++..++..+..  
T Consensus        11 ~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~la~~~g------~~~~~v~~~~g~t~a~~~~l~~l~~~~   83 (353)
T TIGR03235        11 DPAVAEAMLPWLLEEFG-NPSSRTHEFGHNAKKAVERARKQVAEALG------ADTEEVIFTSGATESNNLAILGLARAG   83 (353)
T ss_pred             CHHHHHHHHHHHHhcCC-CCCchhhHHHHHHHHHHHHHHHHHHHHhC------CCCCeEEEeCCHHHHHHHHHHHHHHhc
Confidence            78899998887754221 1111111111      4567777777764      5678999999999999999988751  


Q ss_pred             -CCC-CeEEEcCCcCcchHH---HHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCC
Q 009517          213 -SEN-DGILCPIPQYPLYSA---SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVL  287 (533)
Q Consensus       213 -~~g-d~Vlv~~p~~~~~~~---~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~  287 (533)
                       .+| +.|++....|+.+..   .++..|.+++.+++++  ++.+|++++++++++      ++++|++++++||||.++
T Consensus        84 ~~~g~~~vi~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~l~~~l~~------~~~lv~~~~~~n~tG~~~  155 (353)
T TIGR03235        84 EQKGKKHIITSAIEHPAVLEPIRALERNGFTVTYLPVDE--SGRIDVDELADAIRP------DTLLVSIMHVNNETGSIQ  155 (353)
T ss_pred             ccCCCCeeeEcccccHHHHHHHHHHHhcCCEEEEEccCC--CCcCCHHHHHHhCCC------CCEEEEEEcccCCceecc
Confidence             245 778888766665543   3455799999999874  457899999999865      789999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEec
Q 009517          288 AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTG  367 (533)
Q Consensus       288 s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~  367 (533)
                      +   +++|.++|+++|+++|+|+++.....    + .++    .+.   ..|   +++.|.+|.+ |++|  +|++++  
T Consensus       156 ~---~~~I~~l~~~~~~~~ivD~a~~~g~~----~-~~~----~~~---~~D---~~~~s~~K~~-gp~g--~g~l~~--  212 (353)
T TIGR03235       156 P---IREIAEVLEAHEAFFHVDAAQVVGKI----T-VDL----SAD---RID---LISCSGHKIY-GPKG--IGALVI--  212 (353)
T ss_pred             C---HHHHHHHHHHcCCEEEEEchhhcCCc----c-ccc----ccc---CCC---EEEeehhhcC-CCCc--eEEEEE--
Confidence            8   89999999999999999999874221    1 111    111   123   6677889976 7666  788877  


Q ss_pred             CCHHHHHH--HHHhh-------h-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 009517          368 FSAEVREQ--IYKVA-------S-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLE  437 (533)
Q Consensus       368 ~~~~~~~~--l~~~~-------~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  437 (533)
                       +++....  +....       . ....++.....++..+++          ...+..+.+.++++++++++++.|++ +
T Consensus       213 -~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~----------~~~~~~~~~~~~~~~l~~~l~~~l~~-~  280 (353)
T TIGR03235       213 -RKRGKPKAPLKPIMFGGGQERGLRPGTLPVHLIVGMGEAAE----------IARRNAQAWEVKLRAMRNQLRDALQT-L  280 (353)
T ss_pred             -ccCcccccccCceeeCCCCcCccccCCCChHHHHHHHHHHH----------HHHhhHHHHHHHHHHHHHHHHHHhcc-C
Confidence             5443211  11100       0 123344455555555553          12234567788899999999999988 4


Q ss_pred             CceEecCC-ceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCC-CCceEEEEecCCcCcHH
Q 009517          438 GITCNKAE-GAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVP-GTWHFRCTILPQEDKIP  514 (533)
Q Consensus       438 g~~~~~~~-gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~-g~~~iRis~~~~~e~i~  514 (533)
                      |++++.+. .....++.+.++.          . +.+. +...|++ +|.+.+|..|+... +..++|.+++.+++++.
T Consensus       281 g~~~~~~~~~~~~~i~~~~~~~----------~-~~~~-v~~~L~~-~i~v~~g~~~~~~~~~~~~~l~~~g~~~~~~~  346 (353)
T TIGR03235       281 GVKLNGDPAETIPHILNFSIDG----------V-NSEA-LIVNLRA-DAAVSTGSACSSSKYEPSHVLQAMGLDTDRAR  346 (353)
T ss_pred             CeEEeCCcccccCCEEEEEeCC----------c-CHHH-HHHHHhC-CeEEEchhhcCCCCCCCCHHHHHcCCCHHHhC
Confidence            98877432 2222222232221          1 1233 4455665 99999999996422 22367888887655443

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>PRK06917 hypothetical protein; Provisional

Probab=99.89  E-value=7.5e-21  Score=197.69  Aligned_cols=378  Identities=13%  Similarity=0.095  Sum_probs=236.1

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      ++.++++...++.|+++      +||+..|....                      ..+++    ++++++++.+++.+.
T Consensus        16 ~i~~a~G~~l~D~dG~~------ylD~~~g~~~~----------------------~lGh~----hp~v~~Ai~~ql~~~   63 (447)
T PRK06917         16 VISHGKGVYLYDQNGNK------YFDGSSGAVTA----------------------GIGHG----VKEIADAIKEQAEEV   63 (447)
T ss_pred             eEEeeeeeEEEeCCCCE------EEECchhHHhc----------------------cCCCC----CHHHHHHHHHHHhhC
Confidence            35667777777778777      78876664321                      11111    689999999999873


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc------CCC-CeEEEcCCcCcch
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR------SEN-DGILCPIPQYPLY  228 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~------~~g-d~Vlv~~p~~~~~  228 (533)
                      .    +.+.... ..+.+..+|+.+.+...  ...+.+++++++++|++.+++..+.      .+| .+|+....+|++.
T Consensus        64 ~----~~~~~~~-~~~~~~~lae~L~~~~p--~~~~~v~f~~sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~  136 (447)
T PRK06917         64 S----FVYRSQF-TSEPAEKLAKKLSDLSP--GDLNWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGI  136 (447)
T ss_pred             c----Ccccccc-CCHHHHHHHHHHHHhCC--CCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCc
Confidence            2    1111111 12444456666654322  2235899999999999999998831      133 6799999999997


Q ss_pred             HHHHHHh-CCe------------EEEEecCCCC--CCCC--------CHHHHHHHHHHHHhcCCCeeEEEEeCCCC-CCc
Q 009517          229 SASIALH-GGT------------LVPYYLDEAT--GWGL--------ETSEVKKQLEAAKAKGITVRALVVINPGN-PTG  284 (533)
Q Consensus       229 ~~~~~~~-g~~------------~~~v~~~~~~--~~~l--------d~~~l~~~i~~~~~~g~~~~~iil~~p~N-PtG  284 (533)
                      ...+... +..            +..++.....  .++-        +++.+++.++..  ...++.+||++..+. -.|
T Consensus       137 t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~--~~~~iAAvi~EPi~g~~gG  214 (447)
T PRK06917        137 TMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLACATELETAIERI--GAEHIAAFIAEPIIGAAGA  214 (447)
T ss_pred             cHHHHHhcCCccccccCCCCCCCCeEeCCCcccccccCCChHHHHHHHHHHHHHHHHhc--CCCceEEEEEeccccCcCc
Confidence            6544332 211            1111111000  0111        235666666542  112688888886554 445


Q ss_pred             c-CCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCC-eeEE
Q 009517          285 Q-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGK-RGGY  362 (533)
Q Consensus       285 ~-~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~-riG~  362 (533)
                      + .++++.+++|.++|++||+++|+||++++|...|.  ...     .+..++.||     +.+|+|.++  .|+ ++|+
T Consensus       215 ~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~--~~a-----~~~~gv~PD-----i~~~gK~l~--~G~~Pi~a  280 (447)
T PRK06917        215 AVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGA--MFA-----MEHWGVEPD-----IMTLGKGLG--AGYTPIAA  280 (447)
T ss_pred             eecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccc--hhh-----HHhcCCCCC-----EEEeeehhc--cCCcceEE
Confidence            5 66788899999999999999999999999755553  111     122233688     567899994  485 9999


Q ss_pred             EEEecCCHHHHHHHHHh-----hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Q 009517          363 MEVTGFSAEVREQIYKV-----ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL-  436 (533)
Q Consensus       363 v~~~~~~~~~~~~l~~~-----~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-  436 (533)
                      +++   .+++++.+...     ...|++.++++++++.+.|+           .++ .+.+.++.+++.++|.+.|+++ 
T Consensus       281 ~~~---~~~i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~-----------~l~-~~~l~~~~~~~g~~l~~~L~~l~  345 (447)
T PRK06917        281 TVV---SDRVMEPILRGSRSIMSGHTLSANPLSAATALAVLE-----------YME-KHNLPEKAAEKGEYLIKGLQKVQ  345 (447)
T ss_pred             EEE---cHHHHHHHhccCcccccccCCCCCHHHHHHHHHHHH-----------HHH-HCCHHHHHHHHHHHHHHHHHHHH
Confidence            998   89998887532     23578899999999988884           111 1245566667777777777664 


Q ss_pred             ---CCceEecCCceeEEecccCCCHHHHHHHHhcCCCC----hHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--
Q 009517          437 ---EGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVP----DAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--  507 (533)
Q Consensus       437 ---~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--  507 (533)
                         +.+.-++..|.|+.+ .+..+...     ......    ...++ ..+.++||++.|+..-......+.+|+++.  
T Consensus       346 ~~~~~i~~vrG~Gl~~~i-e~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~Gvl~~~~~~~~~g~~~~~i~l~Ppl~  418 (447)
T PRK06917        346 QQSTIIGDVRGKGLLIGV-EFVADKKT-----KQPFSKSQAVASELI-SVAAKNGLLLYPAVAGQDGKEGDAVIIAPPMT  418 (447)
T ss_pred             hcCCCEEEEeecceEEEE-EEeccCCc-----CCCCcchhHHHHHHH-HHHHhCCcEEEecccccCCCCCCEEEEECCCc
Confidence               435567777766543 22111000     000000    22333 445668999987421000111248999986  


Q ss_pred             CCcCcHHHHHHHHHHHHHHHHHH
Q 009517          508 PQEDKIPAIVTRLTDFHKNFMDK  530 (533)
Q Consensus       508 ~~~e~i~~~~~~l~~~l~~~~~~  530 (533)
                      +++++|++++++|.++++++.++
T Consensus       419 it~~eid~~~~~l~~~l~~~~~~  441 (447)
T PRK06917        419 ITYSELDELLSIFAKSVEEMMQK  441 (447)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999988654

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=99.89  E-value=2.2e-21  Score=196.42  Aligned_cols=302  Identities=11%  Similarity=0.119  Sum_probs=200.1

Q ss_pred             cccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEE
Q 009517          161 GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLV  240 (533)
Q Consensus       161 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~  240 (533)
                      ..|+.+. ..+|++++|++.+        .+++++++|+++|+.+++. ++ ++||+|+++.+.|..-...+...-... 
T Consensus        49 ~R~~~p~-~~~le~~lA~leg--------~~~~v~~~sG~aAi~~~l~-~l-~~GD~VI~~~~~yg~~~~~~~~~~~~~-  116 (364)
T PRK07269         49 TRTKNPT-RAKLEETLAAIES--------ADYALATSSGMSAIVLAFS-VF-PVGSKVVAVRDLYGGSFRWFNQQEKEG-  116 (364)
T ss_pred             eCCCCcc-HHHHHHHHHHHhC--------CCeEEEeCCHHHHHHHHHH-Hh-CCCCEEEEecCCcCchHHHHHHHHhcC-
Confidence            3444443 7899999999964        5789999999999999995 55 799999999999987554443321110 


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCC
Q 009517          241 PYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPE  320 (533)
Q Consensus       241 ~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~  320 (533)
                      .+..    .|..|++++++++++      ++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|....+ . 
T Consensus       117 ~~~~----~~~~d~~~l~~~i~~------~TklV~lesP~NPtg~~~d---i~~I~~la~~~gi~vvvD~t~~~~~~-~-  181 (364)
T PRK07269        117 RFHF----TYANTEEELIAAIEE------DTDIVYIETPTNPLMVEFD---IEKVAKLAHAKGAKVIVDNTFYSPIY-Q-  181 (364)
T ss_pred             cEEE----EecCCHHHHHHhcCc------CceEEEEECCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCccccc-C-
Confidence            1111    235689999999976      7999999999999999886   99999999999999999999754222 1 


Q ss_pred             CCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcC
Q 009517          321 KKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMS  399 (533)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~  399 (533)
                      .+   + .    .   ..|   |++.|++|.++|....=.|++++  .++++.+.+...+. ...+.+++.++.+...|+
T Consensus       182 ~p---l-~----~---gaD---ivv~S~tK~l~g~~d~~gG~v~~--~~~~l~~~~~~~~~~~G~~~s~~~a~l~~~~L~  245 (364)
T PRK07269        182 RP---I-E----L---GAD---IVLHSATKYLSGHNDVLAGVVVT--NDLELYEKLFYNLNTTGAVLSPFDSYLLMRGLK  245 (364)
T ss_pred             Cc---h-h----h---CCc---EEEecCceeccCCCcccceEEEe--CcHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCC
Confidence            11   1 1    1   234   88999999985422234678776  35777777765543 345667777777776664


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce-E-ecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHH
Q 009517          400 PPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGIT-C-NKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCR  477 (533)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~-~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (533)
                                    .+....++.+++...+.+.|++.|++. + +++.||++.|. +. ......+.- ... ....++.
T Consensus       246 --------------tL~~r~~~~~~na~~~a~~L~~~p~v~~v~ypg~gg~~sf~-~~-~~~~~~~f~-~~l-~~~~~~~  307 (364)
T PRK07269        246 --------------TLSLRMERSTANAQEVVAFLKKSPAVKEVLYTGKGGMISFK-VA-DETRIPHIL-NSL-KVFTFAE  307 (364)
T ss_pred             --------------cHHHHHHHHHHHHHHHHHHHHhCCCccEEeCCCcCcEEEEE-EC-CHHHHHHHH-HhC-CcceEcc
Confidence                          245555666778888899998887643 3 47889988875 22 111000000 000 0011122


Q ss_pred             HHHHccceEEEcCCCCCC--C--------CCCceEEEEecCCcCcHHHHHHHHHHHHH
Q 009517          478 RLLNATGIVLVPGSGFGQ--V--------PGTWHFRCTILPQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       478 ~ll~~~gV~v~pg~~f~~--~--------~g~~~iRis~~~~~e~i~~~~~~l~~~l~  525 (533)
                      .+.....+.+.|+..+..  .        -..+.||||+++  |+.+.+++-|+++++
T Consensus       308 slG~~~sl~~~p~~~~~~~~~~~~r~~~Gi~~~liRlsvGl--E~~~dli~dl~~al~  363 (364)
T PRK07269        308 SLGGVESLITYPTTQTHADIPAEVRHSYGLTDDLLRLSIGI--EDARDLIADLKQALE  363 (364)
T ss_pred             CCCCcCeEeeCCcccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHhc
Confidence            233345666667544321  0        113489999996  457888888888764

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.89  E-value=9e-22  Score=204.13  Aligned_cols=365  Identities=13%  Similarity=0.031  Sum_probs=227.8

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      ++.++++...++.||++      +||+..|....                      ..+++    ++++++++.+++.+.
T Consensus        38 ~~~~a~G~~l~D~dG~~------ylD~~~g~~~~----------------------~lGh~----~p~v~~ai~~q~~~~   85 (428)
T PRK12389         38 VMERGKGAYFYDVDGNK------YIDYLAAYGPI----------------------ITGHA----HPHITKAITEAAENG   85 (428)
T ss_pred             EEEeccCCEEEeCCCCE------EEEcccccccc----------------------ccCCC----CHHHHHHHHHHHHhC
Confidence            56677777777778777      78876554321                      11111    688999999999863


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCC-CeEEEcCCcCcchHHHHHH
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-DGILCPIPQYPLYSASIAL  234 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vlv~~p~~~~~~~~~~~  234 (533)
                      .    ..+.+.    +....+++.+.+...   ..++++++++|++|++.+++..+...| .+|+....+|++....+..
T Consensus        86 ~----~~~~~~----~~~~~la~~l~~~~p---~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~  154 (428)
T PRK12389         86 V----LYGTPT----ELEIEFAKMLKEAIP---SLEKVRFVNSGTEAVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLV  154 (428)
T ss_pred             C----ccCCCC----HHHHHHHHHHHHhCC---CCcEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCChHHHHH
Confidence            2    112222    333445555543322   246899999999999999998863344 6789899999997654443


Q ss_pred             h-CCeEEEE--ec----C--CCCCC----CCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccC-CCHHHHHHHHHHHH
Q 009517          235 H-GGTLVPY--YL----D--EATGW----GLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV-LAEENQRAIVDFCK  300 (533)
Q Consensus       235 ~-g~~~~~v--~~----~--~~~~~----~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~-~s~~~l~~i~~l~~  300 (533)
                      . |......  |.    .  ...++    ..|++.+++.++..   +.++.+|+++..++..|.+ ++++.+++|.++|+
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~  231 (428)
T PRK12389        155 AAGSGPSTLGTPDSAGVPKSIAQEVITVPFNDIEALKEALDKW---GDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAH  231 (428)
T ss_pred             hcCCcccccCCCCCCCCCCcccCceEEcCCCCHHHHHHHHHhc---CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHH
Confidence            3 2111100  00    0  00000    12788999888643   2367888888777777864 56788999999999


Q ss_pred             HcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHH--
Q 009517          301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYK--  378 (533)
Q Consensus       301 ~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~--  378 (533)
                      +||+++|+||++++| ..+.  .     ...+..++.||     +.+|+|.++  .|+++|.+++   ++++++.+..  
T Consensus       232 ~~g~llI~DEV~tG~-Rt~~--~-----~a~~~~gv~PD-----ivt~gK~lg--gG~Pi~av~~---~~~i~~~~~~~~  293 (428)
T PRK12389        232 EAGALVIYDEVITAF-RFMY--G-----GAQDLLGVEPD-----LTALGKIIG--GGLPIGAYGG---RKDIMEQVAPLG  293 (428)
T ss_pred             HcCCEEEEEcccccc-ccCc--c-----hhhHHhCCCCC-----eeeechhhc--CCCceeEEeE---HHHHHhhhccCC
Confidence            999999999999997 3331  1     11121223678     568999995  4899999987   8999988753  


Q ss_pred             --hhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCc-eEecCCceeEEe
Q 009517          379 --VASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL----EGI-TCNKAEGAMYLF  451 (533)
Q Consensus       379 --~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~-~~~~~~gg~~~~  451 (533)
                        ....|++.++++++++.+.|+.           +++ +.+.++.+++.++|++.|+++    +.+ .+....| ++..
T Consensus       294 ~~~~~~T~~gnpl~~Aaala~L~~-----------l~~-~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~r~~g-~~gi  360 (428)
T PRK12389        294 PAYQAGTMAGNPASMAAGIACLEV-----------LQQ-EGVYEKLDRLGAMLEEGILEAAEKHGITITINRLKG-ALTV  360 (428)
T ss_pred             CcccccCCccCHHHHHHHHHHHHH-----------Hhc-ccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCc-EEEE
Confidence              1236788999999999888852           111 235566666777777777653    222 2334444 4322


Q ss_pred             cccC-CCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHHH
Q 009517          452 PRIQ-LPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       452 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~  526 (533)
                       .+. .+.................+ ...+.++||++.|..       .+.+.+++.+++++|+++++++++++++
T Consensus       361 -~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~Gv~~~~~~-------~~~~~~~l~~t~e~id~~~~~l~~~l~~  427 (428)
T PRK12389        361 -YFTDEKVTNYDQAERSDGEAFGKF-FKLMLNQGINLAPSK-------YEAWFLTTAHTEEDIEETLEAVDRAFAQ  427 (428)
T ss_pred             -EEeCCCCCChhhhcccCHHHHHHH-HHHHHHCCcEeecCC-------CCCeeecCCCCHHHHHHHHHHHHHHHHh
Confidence             121 11100000000000001233 345566899998741       1134677779999999999999998864

>PRK09028 cystathionine beta-lyase; Provisional

Probab=99.89  E-value=9.4e-21  Score=192.51  Aligned_cols=221  Identities=14%  Similarity=0.141  Sum_probs=166.6

Q ss_pred             cccCCC--cccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHH----HH
Q 009517          161 GAYSHS--QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI----AL  234 (533)
Q Consensus       161 ~~Y~~~--~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~----~~  234 (533)
                      ..|+..  .+..+|++++|++.+        .+++++++|+++|+..++..++ ++||+|++++|.|.++...+    ..
T Consensus        53 ~~Y~r~~npt~~~Le~~iA~le~--------~~~~~~~~sG~~Ai~~~l~all-~~GD~Vvv~~~~Y~~t~~l~~~~l~~  123 (394)
T PRK09028         53 MFYGRRGTPTHFAFQAAIVELEG--------GAGTALYPSGAAAISNALLSFL-KAGDHLLMVDSCYEPTRDLCDKILKG  123 (394)
T ss_pred             ceecCCCCchHHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHHh-CCCCEEEEECCCcHHHHHHHHHhhhh
Confidence            446653  335799999998853        3478999999999999999888 89999999999998776533    44


Q ss_pred             hCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEcccccc
Q 009517          235 HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE  314 (533)
Q Consensus       235 ~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~  314 (533)
                      .|.++..++..       +.+.+++++++      ++|+|++++|+||||.+.+   +++|+++|+++|+++|+|++|..
T Consensus       124 ~Gi~v~~v~~~-------~~e~l~~~l~~------~TklV~lespsNPtg~v~d---l~~I~~la~~~g~~lvvD~t~a~  187 (394)
T PRK09028        124 FGIETTYYDPM-------IGEGIRELIRP------NTKVLFLESPGSITMEVQD---VPTLSRIAHEHDIVVMLDNTWAS  187 (394)
T ss_pred             cceEEEEECCC-------CHHHHHHhcCc------CceEEEEECCCCCCCcHHH---HHHHHHHHHHcCCEEEEECCccc
Confidence            67777766432       46788888876      7999999999999988755   99999999999999999999975


Q ss_pred             ccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHH
Q 009517          315 NVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQIL  393 (533)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a  393 (533)
                      ...  ..|   +     ++   ..|   |++.|.+|.++|..+...|+++.   ++++.+.+..... ...+.++..+..
T Consensus       188 p~~--~~P---l-----~~---GaD---ivv~S~tK~l~Gh~d~~~G~~~~---~~~~~~~l~~~~~~~G~~~~p~~a~l  248 (394)
T PRK09028        188 PIN--SRP---F-----EM---GVD---ISIQAATKYIVGHSDVMLGTATA---NEKHWDQLREHSYLMGQCTSPDDVYL  248 (394)
T ss_pred             ccc--CCc---c-----cc---Cce---EEEEeCCeEecCCCCEEEEEEEC---CHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence            321  111   1     11   234   88999999998766688998765   7777776665443 455667777776


Q ss_pred             HHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 009517          394 ASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGI  439 (533)
Q Consensus       394 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~  439 (533)
                      +..-|+              .+..+.++..++...+.+.|++.|.+
T Consensus       249 ~~rgl~--------------TL~lR~~~~~~na~~la~~L~~~p~v  280 (394)
T PRK09028        249 AMRGLR--------------TLGVRLAQHEKNALKVANWLATRPEV  280 (394)
T ss_pred             HHcccC--------------cHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            666553              24555666677888899999887654

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=99.89  E-value=1.1e-21  Score=198.00  Aligned_cols=304  Identities=12%  Similarity=0.143  Sum_probs=201.7

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCC-CeEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-DGIL  219 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vl  219 (533)
                      ++++++++.+++.+.... ...|.. ....+|.+.++++.        ..+.+++++++++|++.+++.+...+| ++|+
T Consensus        42 ~p~v~~ai~~ql~~~~~~-~~~~~~-~~~~~la~~l~~~~--------~~~~v~~~~SGseA~e~Alklar~~~gr~~Ii  111 (364)
T PRK04013         42 HPEWVEEMSEQLEKLVVA-GPMFEH-EEKEEMLEELSKWV--------NYEYVYMGNSGTEAVEAALKFARLYTGRKEII  111 (364)
T ss_pred             CHHHHHHHHHHHHhcCCc-cCCcCC-HHHHHHHHHHHhhc--------CCCEEEEeCchHHHHHHHHHHHHHHhCCCEEE
Confidence            588999999999874321 112322 22344444444442        246899999999999999998864456 8999


Q ss_pred             EcCCcCcchHHHHHHhCC--------e-----EEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCcc-
Q 009517          220 CPIPQYPLYSASIALHGG--------T-----LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ-  285 (533)
Q Consensus       220 v~~p~~~~~~~~~~~~g~--------~-----~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~-  285 (533)
                      ....+|++..........        .     +..+|      | .|++.+++.+.+      ++++|+++..+...|. 
T Consensus       112 ~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~------~-~d~~~l~~~i~~------~~aAvivEpi~g~gG~~  178 (364)
T PRK04013        112 AMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIP------F-NDVEAAKEAITK------ETAAVIFEPIQGEGGIV  178 (364)
T ss_pred             EECCccccCchhhccCCCCcccccCCCCCCCCcEEec------C-CCHHHHHHHhcC------CcEEEEEcCCcCCCCCc
Confidence            999999997644433211        1     11111      1 267888888864      7899998887776676 


Q ss_pred             CCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEE
Q 009517          286 VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV  365 (533)
Q Consensus       286 ~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~  365 (533)
                      .++++.|++|.++|++||+++|+||+++++ ..|.  +..+     +..+..||     +.+|+|.++  .|+++|.++.
T Consensus       179 ~~~~~yl~~lr~lc~~~gillI~DEv~tG~-RtG~--~~a~-----~~~gv~PD-----iv~~gK~lg--gG~P~~a~~~  243 (364)
T PRK04013        179 PAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGK--FLAI-----EHYKVEPD-----IVTMGKGIG--NGVPVSLTLT  243 (364)
T ss_pred             CCCHHHHHHHHHHHHHcCCEEEEechhhcC-CCCc--hhHH-----HhcCCCCC-----EEEeccccc--CCceeEEEEe
Confidence            556788999999999999999999999998 6553  2222     11222688     667899995  4899999987


Q ss_pred             ecCCHHHHHHHHHhhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCC
Q 009517          366 TGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAE  445 (533)
Q Consensus       366 ~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~  445 (533)
                         +.++..   .....|++.++++++++.+.|+.           .++ +.+.++.++.   + ..+.. +.+.-++..
T Consensus       244 ---~~~~~~---~~~~~T~~gnp~~~aaa~a~l~~-----------i~~-~~l~~~~~~~---l-~~l~~-~~v~~vRG~  300 (364)
T PRK04013        244 ---NFDVER---GKHGSTFGGNPLACKAVAVTLRI-----------LRR-ERLVEKAGEK---F-IEIKG-ERVVTTRGR  300 (364)
T ss_pred             ---cccccC---CCcCCCCCcCHHHHHHHHHHHHH-----------HHh-ccHHHHHHHH---H-HHhcc-CcceeeeeC
Confidence               555421   12337889999999999988852           111 1222222221   2 22222 345567777


Q ss_pred             ceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHH
Q 009517          446 GAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDF  523 (533)
Q Consensus       446 gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~  523 (533)
                      |.|..+ .+..|              ...+. ..+.++||++.+.       +.+.+||.+.  ++++++++++++|+++
T Consensus       301 Gl~~gv-e~~~~--------------~~~i~-~~~~~~Gll~~~~-------g~~vlr~~Ppl~it~~~i~~~~~~l~~~  357 (364)
T PRK04013        301 GLMIGI-VLKKP--------------VGKYV-EELQNRGYLVHTA-------GQRVIRLLPPLIISKDTMEEAKSAIEGV  357 (364)
T ss_pred             cEEEEE-EeCCc--------------HHHHH-HHHHhCCcEEeeC-------CCCEEEEeCCcccCHHHHHHHHHHHHHH
Confidence            765443 23211              12223 4455689999752       2348999995  8999999999999999


Q ss_pred             HHHHH
Q 009517          524 HKNFM  528 (533)
Q Consensus       524 l~~~~  528 (533)
                      ++++.
T Consensus       358 l~~~~  362 (364)
T PRK04013        358 INDIL  362 (364)
T ss_pred             HHHHh
Confidence            98753

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=99.89  E-value=4.2e-21  Score=188.29  Aligned_cols=324  Identities=18%  Similarity=0.230  Sum_probs=228.4

Q ss_pred             CHHHHHHHHHHHhcCCCC--CccccCC--CcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHh--cc--
Q 009517          141 SADSIERAWQILDQIPGR--ATGAYSH--SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL--IR--  212 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~--~~~~Y~~--~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l--~~--  212 (533)
                      .+++++++...+....++  +.+.|+.  ...+.+-|+.||+.++      +++++|++|+|++|+.+++++.+  ..  
T Consensus        14 ~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~llg------a~~~eIiFTSG~TEsnNlaI~g~~~a~~~   87 (386)
T COG1104          14 DPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLLG------ADPEEIIFTSGATESNNLAIKGAALAYRN   87 (386)
T ss_pred             CHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHhC------CCCCeEEEecCCcHHHHHHHHhhHHhhhc
Confidence            688999998888764221  2334432  2235677888888886      67899999999999999999973  21  


Q ss_pred             -CCCCeEEEcCCcCcchHHHHHHh---CCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCC
Q 009517          213 -SENDGILCPIPQYPLYSASIALH---GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLA  288 (533)
Q Consensus       213 -~~gd~Vlv~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s  288 (533)
                       +.|..|+++.--++...+.++.+   |.++.++|++..+  .+|+++|+++|++      +|.+|.+...||.||++.|
T Consensus        88 ~~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G--~v~~e~L~~al~~------~T~LVSim~aNnE~G~IQp  159 (386)
T COG1104          88 AQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNG--LVDLEQLEEALRP------DTILVSIMHANNETGTIQP  159 (386)
T ss_pred             ccCCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCCCCCC--eEcHHHHHHhcCC------CceEEEEEecccCeeeccc
Confidence             14678999998998888777776   9999999998743  7899999999998      8999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecC
Q 009517          289 EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGF  368 (533)
Q Consensus       289 ~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~  368 (533)
                         +++|.++|+++++++.+|.++.-    |..+ ..+..+       .-|   +...|-+|.. |+.|  +|++..   
T Consensus       160 ---I~ei~~i~k~~~i~fHvDAvQa~----Gkip-i~~~~~-------~vD---~ls~SaHK~~-GpkG--iGaLyv---  215 (386)
T COG1104         160 ---IAEIGEICKERGILFHVDAVQAV----GKIP-IDLEEL-------GVD---LLSFSAHKFG-GPKG--IGALYV---  215 (386)
T ss_pred             ---HHHHHHHHHHcCCeEEEehhhhc----Ccee-cccccc-------Ccc---eEEeehhhcc-CCCc--eEEEEE---
Confidence               99999999999999999999974    4322 221111       112   4455667976 7666  577765   


Q ss_pred             CHHHH--HHHHHh---hh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCceE
Q 009517          369 SAEVR--EQIYKV---AS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL-EGITC  441 (533)
Q Consensus       369 ~~~~~--~~l~~~---~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~g~~~  441 (533)
                      .+.+.  ..+.-.   .. .....|..+.++...+++          .-.++++....++++.|+.|.+.|.+. |.+.+
T Consensus       216 ~~~~~~~p~i~GGgQE~g~RsGTenv~~Ivg~~~A~~----------~a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~  285 (386)
T COG1104         216 RPGVRLEPLIHGGGQERGLRSGTENVPGIVGFGKAAE----------IAVEELEEENARLRKLRDRLEDGLLEIIPDVYL  285 (386)
T ss_pred             CCCCccCceeccCcCCCCCCCCCccHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence            33221  111111   11 123335555555555443          133556667778889999999999876 77665


Q ss_pred             ecC------CceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCC----------------CC
Q 009517          442 NKA------EGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVP----------------GT  499 (533)
Q Consensus       442 ~~~------~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~----------------g~  499 (533)
                      ...      .-..+.|.+++                .+. ....|..+||++..|+.+....                -.
T Consensus       286 ~g~~~~rlP~~~~~~f~gv~----------------gE~-ll~~L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~  348 (386)
T COG1104         286 NGDDEPRLPNILNFSFPGVE----------------GES-LLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAH  348 (386)
T ss_pred             cCCcccCCCCeEEEEeCCCc----------------HHH-HHHhccccCeEEeccccccCCCCCccHHHHHcCCChHHhC
Confidence            433      22333333322                222 3366788899999999985321                13


Q ss_pred             ceEEEEec--CCcCcHHHHHHHHHHHHHHHHH
Q 009517          500 WHFRCTIL--PQEDKIPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       500 ~~iRis~~--~~~e~i~~~~~~l~~~l~~~~~  529 (533)
                      +.||||++  .++++++.+++.|.++++++++
T Consensus       349 ~siR~S~g~~tt~eei~~~~~~l~~~i~~lr~  380 (386)
T COG1104         349 GSIRFSLGRFTTEEEIDAAAEALKEIIKRLRE  380 (386)
T ss_pred             ccEEEEcCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence            47999997  8889999999999999998865

>PRK07678 aminotransferase; Validated

Probab=99.89  E-value=4.1e-21  Score=200.07  Aligned_cols=372  Identities=13%  Similarity=0.055  Sum_probs=230.2

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      ++.++++...++.||++      +||+..|....                      ..+++    ++++++++.+++.+.
T Consensus        32 ~i~~a~G~~l~D~dG~~------ylD~~~g~~~~----------------------~lGh~----~p~v~~ai~~q~~~~   79 (451)
T PRK07678         32 VVAKAEGAWVTDIQGNR------YLDGMSGLWCV----------------------NVGYG----RKELAEAAYEQLKTL   79 (451)
T ss_pred             eEEeeeeeEEEeCCCCE------EEEccccHHhh----------------------cCCCC----CHHHHHHHHHHHHhc
Confidence            45667777777778877      77776553221                      11111    688999999998864


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC------CC-CeEEEcCCcCcch
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS------EN-DGILCPIPQYPLY  228 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~------~g-d~Vlv~~p~~~~~  228 (533)
                      ... ...|.     .+....+|+.+.+..+   ..+.++++++|++|++.+++..+..      +| .+|+....+|++.
T Consensus        80 ~~~-~~~~~-----~~~~~~lae~l~~~~~---~~~~v~f~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~  150 (451)
T PRK07678         80 SYF-PLTQS-----HEPAIKLAEKLNEWLG---GEYVIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGN  150 (451)
T ss_pred             Ccc-ccccC-----CHHHHHHHHHHHHhCC---CCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCc
Confidence            220 11111     2233345555544322   1358999999999999999987521      23 5799999999997


Q ss_pred             HHHHHHh-CCe------------EEEEecCCCC--CCCC-----C---HHHHHHHHHHHHhcCCCeeEEEEeCCCCCCcc
Q 009517          229 SASIALH-GGT------------LVPYYLDEAT--GWGL-----E---TSEVKKQLEAAKAKGITVRALVVINPGNPTGQ  285 (533)
Q Consensus       229 ~~~~~~~-g~~------------~~~v~~~~~~--~~~l-----d---~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~  285 (533)
                      ...+... |..            +..++.....  .|+.     |   ++.+++.++..  .+.++.+||++..+.-.|+
T Consensus       151 t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~iAAvi~EPiqg~gG~  228 (451)
T PRK07678        151 SMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECVKEIDRVMTWE--LSETIAAVIMEPIITGGGV  228 (451)
T ss_pred             cHHHhhcCCCcccccccCCCCCCCEEeCCCccccccccCChHHHHHHHHHHHHHHHHhc--CCCceEEEEEccccCCCCc
Confidence            6544432 211            1122211100  0110     1   12345555421  1237888888876655676


Q ss_pred             C-CCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCC-CeeEEE
Q 009517          286 V-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYM  363 (533)
Q Consensus       286 ~-~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G-~riG~v  363 (533)
                      + ++++.+++|.++|++||+++|+||++++|...|.  ...+     +..++.||     +.+|+|.++  .| +++|.+
T Consensus       229 ~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~--~~~~-----~~~gv~PD-----ivt~gK~lg--gG~~Pi~av  294 (451)
T PRK07678        229 LMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGK--AFGF-----MNYGVKPD-----IITMAKGIT--SAYLPLSAT  294 (451)
T ss_pred             ccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCch--hHHH-----HhcCCCCC-----EEEeecccc--cCCcceeEE
Confidence            4 6778899999999999999999999999866653  2221     11233688     567899995  37 799999


Q ss_pred             EEecCCHHHHHHHHH-------hhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Q 009517          364 EVTGFSAEVREQIYK-------VASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNS-  435 (533)
Q Consensus       364 ~~~~~~~~~~~~l~~-------~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-  435 (533)
                      ++   .+++++.+..       ....|++.++++++++.+.|+           ..++ +.+.++.+++.++|.+.|++ 
T Consensus       295 ~~---~~~i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~-----------~l~~-~~~~~~~~~~g~~l~~~l~~~  359 (451)
T PRK07678        295 AV---KKEIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLE-----------IMEN-ENLIERSAQLGELLLEQLKEE  359 (451)
T ss_pred             EE---cHHHHHHHhccCcccccccCCCCCcCHHHHHHHHHHHH-----------HHHh-CCHHHHHHHHHHHHHHHHHHH
Confidence            98   9999988763       134788999999999998884           1111 23455566666666666644 


Q ss_pred             ---CCCceEecCCceeEEecccCCCHHHHHHHHhcCCC-C-hHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--C
Q 009517          436 ---LEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTV-P-DAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--P  508 (533)
Q Consensus       436 ---~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~  508 (533)
                         .+.+..++..|.|+.+. +..+..     .....+ . ...+ ...+.++||++.+..... ..+.+.+||++.  +
T Consensus       360 ~~~~~~v~~vrg~Gl~~~i~-~~~~~~-----~~~~~~~~~a~~i-~~~l~~~Gv~~~~~g~~v-~~~~~~lrl~Ppl~i  431 (451)
T PRK07678        360 LGEHPLVGDIRGKGLLVGIE-LVNDKE-----TKEPADNDKVASV-VAACKEKGLIIGKNGDTV-AGYNNVLTLSPPLVI  431 (451)
T ss_pred             HhcCCCEEEEEeeceEEEEE-EecCCc-----ccCcCchHHHHHH-HHHHHHCCcEEeecCccc-cCCCCEEEEECCCcC
Confidence               34455577777665432 211000     000000 0 1223 344566899997632110 122347999985  7


Q ss_pred             CcCcHHHHHHHHHHHHHHH
Q 009517          509 QEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       509 ~~e~i~~~~~~l~~~l~~~  527 (533)
                      ++++|++++++++++++++
T Consensus       432 t~~eid~~~~~l~~~l~~~  450 (451)
T PRK07678        432 SSEEIAFIVGTLKTALERI  450 (451)
T ss_pred             CHHHHHHHHHHHHHHHHhc
Confidence            9999999999999998764

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=99.89  E-value=5.9e-20  Score=183.58  Aligned_cols=325  Identities=17%  Similarity=0.151  Sum_probs=229.9

Q ss_pred             CHHHHHHHHHHHhcCCC---CCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCe
Q 009517          141 SADSIERAWQILDQIPG---RATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDG  217 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~---~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~  217 (533)
                      ++++++++.+.+.+...   ....-++...-..+|.+.+|+|++        .+..++.+++-.|...++.+++ +++|.
T Consensus        55 ~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~g--------~e~al~f~SGy~AN~~~i~~l~-~~~dl  125 (388)
T COG0156          55 HPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFLG--------AEAALLFSSGFVANLGLLSALL-KKGDL  125 (388)
T ss_pred             CHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHhC--------CCcEEEEcccchhHHHHHHHhc-CCCcE
Confidence            57789999888887421   012223333436678888888864        5567777777788899999998 78999


Q ss_pred             EEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHH
Q 009517          218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD  297 (533)
Q Consensus       218 Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~  297 (533)
                      |+...-.+......++..+++.+.+.-       .|+++||+.+++.+..+.+.+.|++...-...|.+.+   +++|++
T Consensus       126 i~~D~lnHASiidG~rls~a~~~~f~H-------nD~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiAp---L~~l~~  195 (388)
T COG0156         126 IFSDELNHASIIDGIRLSRAEVRRFKH-------NDLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAP---LPELVE  195 (388)
T ss_pred             EEEechhhhhHHHHHHhCCCcEEEecC-------CCHHHHHHHHHhhhccCCCceEEEEeccccCCCCcCC---HHHHHH
Confidence            999999999999999999999988873       4899999999885433333456666677778899988   999999


Q ss_pred             HHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHH
Q 009517          298 FCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY  377 (533)
Q Consensus       298 l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~  377 (533)
                      ++++|+.++++||+|+-.++++...     .++... +..+....|+++||||+| |-.|   ||+.+   +..+++.+.
T Consensus       196 L~~ky~a~L~VDEAHa~Gv~G~~Gr-----G~~e~~-g~~~~~vdi~~gTlsKAl-Gs~G---g~v~g---~~~~~d~L~  262 (388)
T COG0156         196 LAEKYGALLYVDEAHAVGVLGPNGR-----GLAEHF-GLEPEEVDIIVGTLGKAL-GSSG---GYIAG---SAALIDYLR  262 (388)
T ss_pred             HHHHhCcEEEEEccccccccCCCCc-----cHHHHh-CCCCccceEEEEEchhhh-cccC---ceeeC---cHHHHHHHH
Confidence            9999999999999999888864321     111111 112343468999999999 4344   88887   999999987


Q ss_pred             Hhhh---ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEeccc
Q 009517          378 KVAS---VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRI  454 (533)
Q Consensus       378 ~~~~---~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~  454 (533)
                      ....   .+.+.+|...+++..+|+           .+++....+++++++..+++..+... |+.+.+....+.-+ -+
T Consensus       263 ~~ar~~ifStalpP~~aaa~~~al~-----------~l~~~~~~r~~L~~~~~~~~~~~~~~-~~~~~~s~s~I~pv-~~  329 (388)
T COG0156         263 NRARPFIFSTALPPAVAAAALAALR-----------ILEEGPERRERLQELAAFFRSLLKAL-GLVLLPSESPIIPV-IL  329 (388)
T ss_pred             HhCCceeccCCCCHHHHHHHHHHHH-----------HHHhCHHHHHHHHHHHHHHHHHHHhc-CCccCCCCCCeeee-Ee
Confidence            7543   223445555555666653           33444567777888888888666665 66654444333322 12


Q ss_pred             CCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHH
Q 009517          455 QLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDF  523 (533)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~  523 (533)
                      ..+.            ....+...++++ ||++.+-.....+.|...+|+++.  +++++|+.+++.+.++
T Consensus       330 gd~~------------~a~~~s~~l~~~-Gi~v~~i~~PTVp~gtarlRi~lta~ht~~~I~~l~~~l~~~  387 (388)
T COG0156         330 GDEE------------RALEASRALLEE-GIYVSAIRPPTVPKGTARLRITLTAAHTEEDIDRLAEALSEV  387 (388)
T ss_pred             CCHH------------HHHHHHHHHHHC-CeeEeeecCCCCCCCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence            2221            134445566655 999998776666777779999995  8999999999888764

>PRK05968 hypothetical protein; Provisional

Probab=99.89  E-value=1e-20  Score=193.76  Aligned_cols=284  Identities=14%  Similarity=0.084  Sum_probs=192.6

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcch----HHHHHHhCCeEEEEec
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLY----SASIALHGGTLVPYYL  244 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~----~~~~~~~g~~~~~v~~  244 (533)
                      ..+|++++|++.+        .+..+++++|+.|+..++..++ .+||+|+++.+.|...    ...+...|++++.++.
T Consensus        65 ~~~le~~lA~l~g--------~~~av~~~sG~~Ai~~al~al~-~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~  135 (389)
T PRK05968         65 VRAFEEMLAKLEG--------AEDARGFASGMAAISSTVLSFV-EPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDG  135 (389)
T ss_pred             HHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHHh-CCCCEEEEeCCCchHHHHHHHHHHHHcCceEEEeCC
Confidence            6789999998875        2344556677789999998887 7999999999999863    3456667999888863


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcc
Q 009517          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (533)
Q Consensus       245 ~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~  324 (533)
                      .       |++.+++++ +      ++++|++++|+||++.   ..++++|+++|+++|+++|+|++|....+..  +  
T Consensus       136 ~-------d~~~l~~~i-~------~tklV~ie~pt~~~~~---~~dl~~i~~la~~~gi~vivD~a~a~~~~~~--p--  194 (389)
T PRK05968        136 R-------DEEAVAKAL-P------GAKLLYLESPTSWVFE---LQDVAALAALAKRHGVVTMIDNSWASPVFQR--P--  194 (389)
T ss_pred             C-------CHHHHHHhc-c------cCCEEEEECCCCCCCc---HHHHHHHHHHHHHcCCEEEEECCCcchhccC--c--
Confidence            2       789999887 3      6899999877766654   4669999999999999999999997644321  1  


Q ss_pred             cHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh--ccccCChHHHHHHHHHcCCCC
Q 009517          325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS--VNLCSNISGQILASLVMSPPK  402 (533)
Q Consensus       325 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~--~~~~~~~~~q~a~~~~L~~~~  402 (533)
                       + .    +   ..|   +++.|++|.++|..+.+.|+++.   ++++++++.....  .....+++.+.++...|+   
T Consensus       195 -~-~----~---g~D---ivv~S~tK~l~g~~~~~gG~i~~---~~~~~~~l~~~~~~~~g~~~~~~~A~~~l~~L~---  256 (389)
T PRK05968        195 -I-T----L---GVD---LVIHSASKYLGGHSDTVAGVVAG---SKEHIARINAEAYPYLGAKLSPFEAWLLLRGLR---  256 (389)
T ss_pred             -h-h----c---CCc---EEEeeccccccCCCCeEEEEEEE---CHHHHHHHHHHHHHhCCCCCChHHHHHHHcccC---
Confidence             1 1    1   123   77889999995433468999887   8888888776443  334556666666655553   


Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEec-C------------CceeEEecccCCCHHHHHHHHhcCC
Q 009517          403 VGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNK-A------------EGAMYLFPRIQLPEKAIKAAEAEKT  469 (533)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~------------~gg~~~~~~~~~~~~~~~~~~~~~~  469 (533)
                                 .+....++..++.+.+.+.|++.|++..+. |            .||++.| +++  .+.         
T Consensus       257 -----------tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~g~g~~~sf-~~~--~~~---------  313 (389)
T PRK05968        257 -----------TLPLRMKAHEASALEIARRLKAHPVVERVCHPALANHPPAGLSGTSGLFSF-IFR--EGI---------  313 (389)
T ss_pred             -----------cHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCChHHhCCCCceEEEE-EEC--CHH---------
Confidence                       233344445566778889999888875543 3            1345444 232  111         


Q ss_pred             CChHHHHHHHHHccceEEEcCCCCC------------C------CCC--CceEEEEecCCcCcHHHHHHHHHHHHHHH
Q 009517          470 VPDAFYCRRLLNATGIVLVPGSGFG------------Q------VPG--TWHFRCTILPQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       470 ~~~~~~~~~ll~~~gV~v~pg~~f~------------~------~~g--~~~iRis~~~~~e~i~~~~~~l~~~l~~~  527 (533)
                       ....|+ ..|+..++.+.-|..+.            .      ..|  .+.||+|+++  |+.+.+++.|++++++.
T Consensus       314 -~~~~f~-~~L~~~~~~~s~G~~~slv~p~~~~~~~~~~~~~~~~~gi~~~liR~SvGl--E~~~dl~~dl~~al~~~  387 (389)
T PRK05968        314 -DVRAFA-DALKLFRLGVSWGGHESLVVPAEVVLQQKAQPNSAARFGVSPRSVRLHVGL--EGTEALWADLEQALAAA  387 (389)
T ss_pred             -HHHHHH-HhCCccEEecCCCCCCceeeeCcccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHHHHh
Confidence             123333 44555666555554443            0      011  3589999996  45678888888888754

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.89  E-value=7.6e-22  Score=203.64  Aligned_cols=372  Identities=12%  Similarity=0.046  Sum_probs=226.4

Q ss_pred             cccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHH
Q 009517           72 VRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQI  151 (533)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~  151 (533)
                      +.+.++.++++...++.||++      +||+..|....                      ..+++    ++.+++++.++
T Consensus        34 ~~p~~i~~a~G~~l~D~dG~~------yiD~~~g~~~~----------------------~lGh~----~p~v~~ai~~q   81 (433)
T PRK00615         34 ITPPIVSSASGDIFIDSLGKT------FIDFCGSWGSL----------------------IHGHS----HPKICDAIQQG   81 (433)
T ss_pred             CCCceEEEeeeCEEEECCCCE------EEEcccchhcc----------------------ccCCC----CHHHHHHHHHH
Confidence            344467778888878788887      88886664322                      11111    68999999999


Q ss_pred             HhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCC-CeEEEcCCcCcchHH
Q 009517          152 LDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-DGILCPIPQYPLYSA  230 (533)
Q Consensus       152 ~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vlv~~p~~~~~~~  230 (533)
                      +.+..   ...+ +.    +....+|+.+.+..+  ...+.|.++++|+||++.+++..+...| .+|+....+|+++..
T Consensus        82 ~~~~~---~~~~-~~----~~~~~la~~L~~~~~--~~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~td  151 (433)
T PRK00615         82 AERGT---SYGL-TS----EQEILFAEELFSYLG--LEDHKIRFVSSGTEATMTAVRLARGITGRSIIIKFLGCYHGHAD  151 (433)
T ss_pred             HHhCC---CCCC-CC----HHHHHHHHHHHHhCC--CCcCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCCc
Confidence            98632   1111 22    233445555544332  2236899999999999999998864345 678888999999652


Q ss_pred             H---HHHhCCeE-----EEEecCC-CCC---C-CCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccC-CCHHHHHHHH
Q 009517          231 S---IALHGGTL-----VPYYLDE-ATG---W-GLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV-LAEENQRAIV  296 (533)
Q Consensus       231 ~---~~~~g~~~-----~~v~~~~-~~~---~-~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~-~s~~~l~~i~  296 (533)
                      .   ....+...     ..+.... ...   + .-|++.+++.+...   +.++.+||+.......|.. ++++.+++|.
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~aavI~Epv~~~~G~~~p~~~yl~~l~  228 (433)
T PRK00615        152 TLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPYNDFQIFQTVMNSL---GHRVAGVIFEPICANMGVVLPKPGFIEGII  228 (433)
T ss_pred             ccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhc---CCceEEEEECCCCCCCCcccCCHHHHHHHH
Confidence            2   11111100     0000000 000   0 12688899888653   2357777777666666764 4677899999


Q ss_pred             HHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHH
Q 009517          297 DFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQI  376 (533)
Q Consensus       297 ~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l  376 (533)
                      ++|++||+++|+||++.++ ..|.  ..     ..+..++.||     +.+|+|.++  .|+++|++++   ++++++.+
T Consensus       229 ~lc~~~g~llI~DEv~tG~-R~G~--~g-----a~~~~gv~PD-----i~~~gK~lg--gG~p~~av~~---~~~i~~~~  290 (433)
T PRK00615        229 QTCRRTGSLSIMDEVVTGF-RVAQ--GG-----AAAIYHVKPD-----ITVYGKILG--GGLPAAAVVA---HKSIMDHL  290 (433)
T ss_pred             HHHHHcCCEEEEEcccccc-cccH--hH-----HHHhcCCCCC-----eEEEccccc--CCcceeeeee---cHHHHhhh
Confidence            9999999999999999987 4442  11     1222223677     346899994  4899999998   99999888


Q ss_pred             HHh----hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CC--ceEecCCce
Q 009517          377 YKV----ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL---EG--ITCNKAEGA  447 (533)
Q Consensus       377 ~~~----~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~g--~~~~~~~gg  447 (533)
                      ...    ...|++.++++++++.+.|+.           .++ +..+++++++.+++.+.|+++   .|  +..++ .|.
T Consensus       291 ~~~~~~~~~~T~~g~p~~~aa~la~L~~-----------i~~-~~~~~~~~~~g~~l~~~l~~~~~~~g~~v~~~r-~G~  357 (433)
T PRK00615        291 APEGTIFQAGTLSGNPLAMAAGKASINL-----------CRE-QGFYTQLSTLEQNFLSPIEEMIRSQGFPVSLVR-YGS  357 (433)
T ss_pred             cCCCCcccCCCCcccHHHHHHHHHHHHH-----------Hhc-ccHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEe-ece
Confidence            532    225677899999999888752           111 234455555555555554442   13  44455 555


Q ss_pred             eEEecccCC-CHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHHH
Q 009517          448 MYLFPRIQL-PEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       448 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~  526 (533)
                      |+.+ .+.. +...+.............+. ..|.++||++.|... +  .   . =+|..+++++|+++++++++++++
T Consensus       358 ~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~Gv~~~~~~~-~--~---~-~ls~~ht~~did~~~~a~~~~~~~  428 (433)
T PRK00615        358 MFSF-FFNENRPNNLAEAQLSDIEAFQTFY-QSAFSKGVYLSPSPF-E--A---S-FLSSAHSMENLDYAQNVLIDSLEK  428 (433)
T ss_pred             EEEE-EEeCCCCCChHHHhhCCHHHHHHHH-HHHHHCCeeecCccc-c--c---c-ceecCCCHHHHHHHHHHHHHHHHH
Confidence            4443 3321 11000000000000112344 445568999987431 1  1   1 267779999999999999999987


Q ss_pred             HH
Q 009517          527 FM  528 (533)
Q Consensus       527 ~~  528 (533)
                      +.
T Consensus       429 ~~  430 (433)
T PRK00615        429 VF  430 (433)
T ss_pred             Hh
Confidence            63

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=99.89  E-value=2.6e-20  Score=189.85  Aligned_cols=193  Identities=18%  Similarity=0.253  Sum_probs=148.9

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHh-ccCCCCeEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL-IRSENDGIL  219 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~~gd~Vl  219 (533)
                      +.+..+++.+.+...    .. +    |..++++++++++.+.+|    .+++++|+|+++|+.+++.++ + .+||+|+
T Consensus        10 ~~~e~~a~~~~~~~~----~~-~----~~g~~~~~~e~~la~~~g----~~~~v~~~sgt~aL~~~l~al~~-~pGd~Vi   75 (376)
T TIGR02379        10 TGQELEYIAEAISEG----KL-S----GDGPFSRRCETWLENRTG----TKKALLTPSCTAALEMAALLLDI-QPGDEVI   75 (376)
T ss_pred             CHHHHHHHHHHHHcC----Cc-c----CCcHHHHHHHHHHHHHhC----CCeEEEeCCHHHHHHHHHHHcCC-CCcCEEE
Confidence            567788888877651    11 1    223456666666665544    568999999999999999887 5 7999999


Q ss_pred             EcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHH
Q 009517          220 CPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC  299 (533)
Q Consensus       220 v~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~  299 (533)
                      ++.++|..+...+...|++++.++++++ +|.+|++.+++++++      ++++|+   |+||+|...+   +++|.++|
T Consensus        76 v~~~t~~~~~~~~~~~G~~~v~vd~d~~-~~~~d~~~le~~i~~------~tk~Ii---p~~~~G~~~d---~~~I~~la  142 (376)
T TIGR02379        76 MPSYTFVSTANAFVLRGAKIVFVDIRPD-TMNIDETLIESAITH------RTKAIV---PVHYAGVACD---MDTIMALA  142 (376)
T ss_pred             ECCCCcHHHHHHHHHcCCEEEEEecCCC-cCCCCHHHHHHhcCc------CceEEE---EeCCCCCccC---HHHHHHHH
Confidence            9999999999999999999999999864 688999999999976      789886   6678999887   78999999


Q ss_pred             HHcCCEEEEcccccccc-ccCCCCcccHHHHHhhcCCCCCCceEEEEecCC----ccCCCCCCCeeEEEEEecCCHHHHH
Q 009517          300 KKEGLVLLADEVYQENV-YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVS----KGYYGECGKRGGYMEVTGFSAEVRE  374 (533)
Q Consensus       300 ~~~~~~lI~De~y~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~S----K~~~gl~G~riG~v~~~~~~~~~~~  374 (533)
                      ++||++||+|++|+.+. |.+. +..+           ..+     +.+||    |.+.  +|.+.|++++  .++++.+
T Consensus       143 ~~~~i~vIeDaa~~~g~~~~~~-~~g~-----------~~~-----~~~fSf~~~K~l~--~g~~gG~v~~--~~~~~~~  201 (376)
T TIGR02379       143 NKHQLFVIEDAAQGVMSTYKGR-ALGS-----------IGH-----LGTFSFHETKNYT--SGGEGGALLI--NDQAFIE  201 (376)
T ss_pred             HHCCCEEEEECccccCCccCCc-ccCC-----------CCC-----EEEEeCCCCCcCc--ccCCceEEEE--CCHHHHH
Confidence            99999999999998754 4432 2111           012     33444    8873  6888999887  3688988


Q ss_pred             HHHHhhh
Q 009517          375 QIYKVAS  381 (533)
Q Consensus       375 ~l~~~~~  381 (533)
                      .+..++.
T Consensus       202 ~~~~~~~  208 (376)
T TIGR02379       202 RAEIIRE  208 (376)
T ss_pred             HHHHHHH
Confidence            8887654

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.89  E-value=2e-20  Score=194.91  Aligned_cols=380  Identities=13%  Similarity=0.034  Sum_probs=230.4

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      ++.++++...++.||++      +||+..|....                      ..+++    ++++++++.+++.+.
T Consensus        43 ~~~~a~G~~l~D~dG~~------ylD~~~g~~~~----------------------~lGH~----~p~v~~Ai~~q~~~~   90 (459)
T PRK06931         43 AIAKAQGVWVTDVEGNQ------YLDCLAGAGTL----------------------ALGHN----HPDVLQSIQDVLTSG   90 (459)
T ss_pred             eEEeccccEEEeCCCCE------EEEcccchhhc----------------------cCCCC----CHHHHHHHHHHHhhh
Confidence            56778888778888888      77776554322                      11122    688999999988752


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCC-CCEEEcCChHHHHHHHHHHhccCCC-CeEEEcCCcCcchHHHHH
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSEN-DGILCPIPQYPLYSASIA  233 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~~~g-d~Vlv~~p~~~~~~~~~~  233 (533)
                      ..   . +.... ..+.+..+|+.+....+..... ..++++++|++|++.+++..+...| ++|+....+|++....+.
T Consensus        91 ~~---~-~~~~~-~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~SGsEAve~AlklAr~~tgr~~Ii~~~~~yHG~t~~al  165 (459)
T PRK06931         91 LP---L-HTLDL-TTPLKDAFSEYLLSLLPGQGKEYCLQFTGPSGADAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGAL  165 (459)
T ss_pred             cc---c-ccccc-CCHHHHHHHHHHHHhCCCccccceEEEeCCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHH
Confidence            11   1 11101 2345555666665543211011 2346668999999999998763344 679999999999876555


Q ss_pred             HhCC-------------eEEEEecCCCC--CCC----CCHHHHHHHHHHHHh----cCCCeeEEEEeCCCCCCcc-CCCH
Q 009517          234 LHGG-------------TLVPYYLDEAT--GWG----LETSEVKKQLEAAKA----KGITVRALVVINPGNPTGQ-VLAE  289 (533)
Q Consensus       234 ~~g~-------------~~~~v~~~~~~--~~~----ld~~~l~~~i~~~~~----~g~~~~~iil~~p~NPtG~-~~s~  289 (533)
                      ....             .+..+|.....  .|+    -+.+.+++.+.....    ...++.+||++..+.-.|+ .+++
T Consensus       166 s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~  245 (459)
T PRK06931        166 AVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPV  245 (459)
T ss_pred             hhcCCcccccCCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCH
Confidence            3321             12222221100  011    123444333332211    2235788888866655676 5678


Q ss_pred             HHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCC
Q 009517          290 ENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFS  369 (533)
Q Consensus       290 ~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~  369 (533)
                      +.+++|.++|++||+++|+||++++|...|.  +.     ..+..++.||     +.+++|.++  .|+++|.+++   .
T Consensus       246 ~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~--~~-----a~~~~gv~PD-----ivt~gK~l~--gG~Pi~av~~---~  308 (459)
T PRK06931        246 EWLQKIREVTQKHGILLIVDEVQAGFARTGK--MF-----AFEHAGIEPD-----IIVMSKAVG--GGLPLAVLGI---K  308 (459)
T ss_pred             HHHHHHHHHHHHcCCEEEEecchhcCCcCch--HH-----HhhhcCCCCC-----EEEeccccc--CCcceeeeee---H
Confidence            8899999999999999999999999866553  22     2222233788     667899995  4899998876   5


Q ss_pred             HHHHHHHHHh-hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCceEecC
Q 009517          370 AEVREQIYKV-ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL----EGITCNKA  444 (533)
Q Consensus       370 ~~~~~~l~~~-~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~  444 (533)
                      +++ +.+... ...|++.++++++++.+.|+.           .+ .+.+.++.+++.++|.+.|+++    |.+..++.
T Consensus       309 ~~~-~~~~~~~~~~T~~gnpla~aaala~L~~-----------l~-~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~vrG  375 (459)
T PRK06931        309 KEF-DAWQPGGHTGTFRGNQLAMATGLTTLKI-----------LK-EENLAQNAAERGEWLKAQLAELQKRYPCIGNVRG  375 (459)
T ss_pred             HHH-hhccCCCCCCCCCCCHHHHHHHHHHHHH-----------HH-hCCHHHHHHHHHHHHHHHHHHHHHhCCCeEeEec
Confidence            553 554332 236789999999999988842           11 1234555666666666666554    44566777


Q ss_pred             CceeEEecccCCCHHHHHHHHhcCCC-C-hHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHH
Q 009517          445 EGAMYLFPRIQLPEKAIKAAEAEKTV-P-DAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRL  520 (533)
Q Consensus       445 ~gg~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l  520 (533)
                      .|.|+.+ .+..+....+.......+ . ...+. ..+.++||++.++..+     .+.+|+.+.  +++++|+++++++
T Consensus       376 ~Glm~gi-el~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Gvl~~~~~~~-----~~~l~~~Ppl~it~~eid~~~~~l  448 (459)
T PRK06931        376 RGLMIGI-EIVDERQPADAMGSYPADGELAAAIQ-KACFENGLLLERGGRN-----GNVVRLLPPLLITQAECEEFIDRF  448 (459)
T ss_pred             CceEEEE-EEccCcccccccccCCccHHHHHHHH-HHHHHCCcEEeecCCC-----CCEEEEECCCCcCHHHHHHHHHHH
Confidence            8776543 232110000000000000 0 12233 4455789999874322     237888885  8999999999999


Q ss_pred             HHHHHHHHH
Q 009517          521 TDFHKNFMD  529 (533)
Q Consensus       521 ~~~l~~~~~  529 (533)
                      +++++++.+
T Consensus       449 ~~~l~~~~~  457 (459)
T PRK06931        449 EQALLAAVK  457 (459)
T ss_pred             HHHHHHHHh
Confidence            999988655

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=99.89  E-value=2.1e-20  Score=190.97  Aligned_cols=215  Identities=14%  Similarity=0.197  Sum_probs=156.5

Q ss_pred             ccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHH---HhCCeEEEEec
Q 009517          168 GIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA---LHGGTLVPYYL  244 (533)
Q Consensus       168 G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~---~~g~~~~~v~~  244 (533)
                      ...+|++++|++++        .+++++++|+++|+..++..++ .+||+|+++.|+|..+...++   ..|+++..+  
T Consensus        54 ~~~~lE~~lA~l~g--------~~~~l~~~sG~~Ai~~~l~~ll-~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~v~~~--  122 (385)
T PRK08574         54 TLRPLEEALAKLEG--------GVDALAFNSGMAAISTLFFSLL-KAGDRVVLPMEAYGTTLRLLKSLEKFGVKVVLA--  122 (385)
T ss_pred             cHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHHh-CCCCEEEEcCCCchhHHHHHHHhhccCcEEEEE--
Confidence            37899999999974        4578889999999999999888 799999999999998876664   347666554  


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcc
Q 009517          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (533)
Q Consensus       245 ~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~  324 (533)
                            .+|++.+++++++.     ++++|++++|+||||.+++   +++|+++|+++|+++|+|++|..... . .+  
T Consensus       123 ------~~d~~~l~~~i~~~-----~tklV~ie~p~NPtG~v~d---l~~I~~la~~~gi~livD~t~a~~~~-~-~~--  184 (385)
T PRK08574        123 ------YPSTEDIIEAIKEG-----RTKLVFIETMTNPTLKVID---VPEVAKAAKELGAILVVDNTFATPLL-Y-RP--  184 (385)
T ss_pred             ------CCCHHHHHHhcCcc-----CceEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCcccc-C-Ch--
Confidence                  23688899888652     6899999999999999998   88999999999999999999954221 0 11  


Q ss_pred             cHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCe-eEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCC
Q 009517          325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKR-GGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPK  402 (533)
Q Consensus       325 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~r-iG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~  402 (533)
                       +     ..   ..|   +++.|++|.++| +|-. .|++++  .++++.+.+..... .+.+.+++..+.+...|+   
T Consensus       185 -l-----~~---GaD---ivv~S~sK~l~g-~~d~~gG~vi~--~~~~~~~~~~~~~~~~g~~~~p~~a~l~l~~l~---  246 (385)
T PRK08574        185 -L-----RH---GAD---FVVHSLTKYIAG-HNDVVGGVAVA--WSGEFLEELWEWRRRLGTIMQPFEAYLVLRGLK---  246 (385)
T ss_pred             -h-----hh---CCc---EEEeeCceeecC-CCCceeEEEEE--CcHHHHHHHHHHHHhcCCCCCHHHHHHHHcccC---
Confidence             1     11   233   889999999843 5544 575665  36788887776554 444555665555554443   


Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Q 009517          403 VGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGIT  440 (533)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~  440 (533)
                                 .+....++..++...+.+.|++.|.+.
T Consensus       247 -----------tL~~R~~~~~~na~~la~~L~~~p~v~  273 (385)
T PRK08574        247 -----------TLEVRFERQCRNAMAIAEFLSEHPKVA  273 (385)
T ss_pred             -----------cHHHHHHHHHHHHHHHHHHHHcCCCcC
Confidence                       133344455556777888888775543

>PRK07480 putative aminotransferase; Validated

Probab=99.89  E-value=6.1e-21  Score=198.64  Aligned_cols=374  Identities=14%  Similarity=0.114  Sum_probs=231.0

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      ++.++++...++.||++      +||+..|....                      ..+++    ++++++++.+++.+.
T Consensus        35 ~i~~a~G~~l~D~dG~~------ylD~~~g~~~~----------------------~lGh~----~p~v~~Ai~~q~~~~   82 (456)
T PRK07480         35 VITRAEGVYLWDSEGNK------ILDGMAGLWCV----------------------NVGYG----RKELADAAARQMREL   82 (456)
T ss_pred             eEEeceeeEEEeCCCCE------EEEccchHHHh----------------------cCCCC----CHHHHHHHHHHHHhc
Confidence            45666777666777777      77776553221                      11111    588999999999873


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC------CC-CeEEEcCCcCcch
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS------EN-DGILCPIPQYPLY  228 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~------~g-d~Vlv~~p~~~~~  228 (533)
                      ..  ...+  .....+.+..+|+.+.+..+  ...++++++++|++|++.+++..+..      +| .+|+....+|++.
T Consensus        83 ~~--~~~~--~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~  156 (456)
T PRK07480         83 PY--YNTF--FKTTHPPAIELAAKLAEVAP--PGFNHVFFTNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGS  156 (456)
T ss_pred             CC--cccc--cccCCHHHHHHHHHHHHhCC--CCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCc
Confidence            21  1111  01123444555666654432  23468999999999999999987521      33 4688888999986


Q ss_pred             HHHHHHh-CCe------------EEEEecCC--CCCCCCC--------HHHHHHHHHHHHhcCCCeeEEEEeCCCCCCcc
Q 009517          229 SASIALH-GGT------------LVPYYLDE--ATGWGLE--------TSEVKKQLEAAKAKGITVRALVVINPGNPTGQ  285 (533)
Q Consensus       229 ~~~~~~~-g~~------------~~~v~~~~--~~~~~ld--------~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~  285 (533)
                      ....... |..            +..++...  ...+..+        ++.+++.+...  .+.++.+||++..+.-.|+
T Consensus       157 tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~vAAvi~EPiqg~gG~  234 (456)
T PRK07480        157 TVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAARQLEAKILEL--GADNVAAFIGEPIQGAGGV  234 (456)
T ss_pred             chhhhhccCChhhhcccCCCCCCCeecCCCcccccccCCChHHHHHHHHHHHHHHHHhc--CCCcEEEEEEccccCCCCC
Confidence            5333222 111            11111100  0000111        24555444321  1236888888877766777


Q ss_pred             -CCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCC-CeeEEE
Q 009517          286 -VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYM  363 (533)
Q Consensus       286 -~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G-~riG~v  363 (533)
                       .++.+.+++|.++|++||+++|+||++++|...|.  ...+     +..++.||     +.+|+|.++  .| +++|.+
T Consensus       235 ~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~--~~a~-----~~~gv~PD-----iv~~gK~l~--gG~~Pi~av  300 (456)
T PRK07480        235 IIPPATYWPEIQRICRKYDILLVADEVICGFGRTGE--WFGS-----QHFGIKPD-----LMTIAKGLT--SGYIPMGAV  300 (456)
T ss_pred             ccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcc--hhhh-----hhcCCCCC-----eeeeehhhc--cCCccceEE
Confidence             56777799999999999999999999999765553  2221     22233688     567899995  47 499999


Q ss_pred             EEecCCHHHHHHHHH----h-hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHH-HHHHHHHHHHHhcC-
Q 009517          364 EVTGFSAEVREQIYK----V-ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSL-ARRAKTLEDAFNSL-  436 (533)
Q Consensus       364 ~~~~~~~~~~~~l~~----~-~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~L~~~-  436 (533)
                      ++   .+++++.+..    . ...|++.++++++++.+.|+.           .++ +.+.++. +++.++|.+.|+++ 
T Consensus       301 ~~---~~~i~~~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~-----------l~~-~~l~~~~~~~~g~~l~~~l~~l~  365 (456)
T PRK07480        301 GV---GDRVAEVLIEEGGEFNHGFTYSGHPVAAAVALANLRI-----------LRD-EGIVERVRDDTGPYLQKRLRELA  365 (456)
T ss_pred             EE---cHHHHHHHhcCCCCcccCCCCCcCHHHHHHHHHHHHH-----------HHh-CCHHHHHHHHHHHHHHHHHHHhh
Confidence            98   8999888731    1 236889999999999998841           111 2344455 35556666666553 


Q ss_pred             --CCceEecCCceeEEecccCCCHHHHHHHHhcCCCC---hHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CC
Q 009517          437 --EGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVP---DAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQ  509 (533)
Q Consensus       437 --~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~  509 (533)
                        +.+..++..|.|+.+ .+..+..     .+.....   ....+...+.++||++.+.   +     +.+||++.  ++
T Consensus       366 ~~~~i~~vrG~Glm~gi-e~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Gll~~~~---~-----~~l~~~Ppl~it  431 (456)
T PRK07480        366 DHPLVGEVRGVGLVGAI-ELVKDKA-----TRERFEAGGGVGTICRDHCFANGLIMRAV---G-----DRMIISPPLVIT  431 (456)
T ss_pred             cCCCeeeEEeecceEEE-EEecccc-----ccccCcchhhHHHHHHHHHHHCCcEEeec---C-----CEEEEECCCCCC
Confidence              445556777766554 2321100     0000001   1122334456789999751   1     27899996  69


Q ss_pred             cCcHHHHHHHHHHHHHHHHHHhc
Q 009517          510 EDKIPAIVTRLTDFHKNFMDKFR  532 (533)
Q Consensus       510 ~e~i~~~~~~l~~~l~~~~~~~~  532 (533)
                      +++|++++++|+++++++.++++
T Consensus       432 ~~eid~~~~~l~~al~~~~~~~~  454 (456)
T PRK07480        432 HAEIDELVEKARKALDATAAELG  454 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999877653

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.88  E-value=1.3e-20  Score=196.61  Aligned_cols=365  Identities=11%  Similarity=0.052  Sum_probs=233.3

Q ss_pred             HHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCC
Q 009517           77 VSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIP  156 (533)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~  156 (533)
                      ..++++...++.|+++      ++|+..|....                      ..+++    ++++++++.+++.+..
T Consensus        33 i~~a~G~~l~D~dG~~------ylD~~~g~~~~----------------------~lGh~----~p~v~~Ai~~ql~~l~   80 (466)
T PRK07030         33 IRRGEGVWLEDFEGKR------YLDAVSSWWVN----------------------VFGHA----NPRINQRIKDQVDQLE   80 (466)
T ss_pred             EEeeeccEEEECCCCE------EEEcchhHHhh----------------------cCCCC----CHHHHHHHHHHHHhcC
Confidence            4556666666667777      88886664321                      11111    6889999999998742


Q ss_pred             CCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc------CCC-CeEEEcCCcCcchH
Q 009517          157 GRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR------SEN-DGILCPIPQYPLYS  229 (533)
Q Consensus       157 ~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~------~~g-d~Vlv~~p~~~~~~  229 (533)
                      ......|     ..+.+..+|+.+.....  ...+.|+++++|++|++.+++..+.      .+| .+|+....+|++..
T Consensus        81 ~~~~~~~-----~~~~~~~lae~L~~~~p--~~~~~v~f~~sGsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t  153 (466)
T PRK07030         81 HVILAGF-----SHEPVIELSERLVKITP--PGLSRCFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGET  153 (466)
T ss_pred             Ccccccc-----CCHHHHHHHHHHHHhCC--CCcCEEEEeCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCccc
Confidence            1011112     22344445555554322  2346899999999999999998741      123 57999999999976


Q ss_pred             HHHHHhCCe-------------EEEEecCCCC--CCCC--------CHHHHHHHHHHHHhcCCCeeEEEEeC-CCCCCcc
Q 009517          230 ASIALHGGT-------------LVPYYLDEAT--GWGL--------ETSEVKKQLEAAKAKGITVRALVVIN-PGNPTGQ  285 (533)
Q Consensus       230 ~~~~~~g~~-------------~~~v~~~~~~--~~~l--------d~~~l~~~i~~~~~~g~~~~~iil~~-p~NPtG~  285 (533)
                      ..+...+..             +..+|.....  .++.        +++.+++.+...   +.++.+||++. .+.-.|.
T Consensus       154 ~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~le~~~~~~---~~~iAAvi~EP~iqg~gG~  230 (466)
T PRK07030        154 LAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLAEH---HDEIAAVIVEPLIQGAGGM  230 (466)
T ss_pred             HHHHhccCCccccccCCccCCCCEEcCCCCccccccCCCHHHHHHHHHHHHHHHHHhC---CCceEEEEEecccccCCCc
Confidence            544333211             1122211100  0111        245567767532   33788888886 4666676


Q ss_pred             -CCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCC-CeeEEE
Q 009517          286 -VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYM  363 (533)
Q Consensus       286 -~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G-~riG~v  363 (533)
                       .++++.+++|.++|++||+++|+||++++|...|.  +..     .+..++.||     +.+|+|.++  .| +++|.+
T Consensus       231 ~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~--~~a-----~~~~gv~PD-----iv~~gKgl~--gG~~Pi~av  296 (466)
T PRK07030        231 RMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGT--MFA-----CEQAGIRPD-----FLCLSKALT--GGYLPLAAV  296 (466)
T ss_pred             ccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcccc--chH-----HHhcCCCCC-----EEeeehhcc--CCcccceEE
Confidence             66778899999999999999999999999866653  222     222334788     667899995  48 599999


Q ss_pred             EEecCCHHHHHHHHH--------hhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009517          364 EVTGFSAEVREQIYK--------VASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNS  435 (533)
Q Consensus       364 ~~~~~~~~~~~~l~~--------~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  435 (533)
                      ++   ++++++.+..        ....|++.++++++++.+.|+           ..+ .+.+.++.+++.++|.+.|++
T Consensus       297 ~~---~~ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~-----------~i~-~~~l~~~~~~~G~~l~~~L~~  361 (466)
T PRK07030        297 LT---TDTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLD-----------IFE-QDNVIENNRALARRMAEATAH  361 (466)
T ss_pred             Ee---cHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHH-----------HHH-hcCHHHHHHHHHHHHHHHHHH
Confidence            98   9999888742        233678899999999999884           222 134556667777777777766


Q ss_pred             C---CCceEecCCceeEEecccCCCHHHHHHHHhcCCCC----hHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec-
Q 009517          436 L---EGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVP----DAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-  507 (533)
Q Consensus       436 ~---~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-  507 (533)
                      +   |.+.-++..|.|..+ .+..+..     .+.+...    ...++ ..+.++||++.+.   +     +.+|+.+. 
T Consensus       362 l~~~~~v~~vrG~Gl~~gi-e~~~~~~-----~~~~~~~~~~~~~~i~-~~~~~~Gvl~~~~---g-----~~i~~~Ppl  426 (466)
T PRK07030        362 LADHPHVAEVRQTGMILAI-EMVQDKA-----SKTPYPWQERRGLKVY-QHALERGALLRPL---G-----SVVYFLPPY  426 (466)
T ss_pred             HhcCCCEEEeEeceeEEEE-EeccCcc-----ccccCcchhHHHHHHH-HHHHHCCeEEEec---C-----CEEEEECCc
Confidence            4   445557777766443 2321100     0000000    12233 4455789999862   1     27898864 


Q ss_pred             -CCcCcHHHHHHHHHHHHHHH
Q 009517          508 -PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       508 -~~~e~i~~~~~~l~~~l~~~  527 (533)
                       +++++|++++++++++++++
T Consensus       427 ~it~~eid~~~~~l~~al~~~  447 (466)
T PRK07030        427 VITPEQIDFLAEVASEGIDIA  447 (466)
T ss_pred             cCCHHHHHHHHHHHHHHHHHH
Confidence             89999999999999999887

>PRK07483 hypothetical protein; Provisional

Probab=99.88  E-value=8.7e-21  Score=196.96  Aligned_cols=375  Identities=16%  Similarity=0.116  Sum_probs=233.3

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      ++.++++...++.|+++      +||+..|....                      ..+++    ++.+++++.+++.+.
T Consensus        15 ~i~~a~G~~l~D~dG~~------ylD~~~g~~~~----------------------~lGh~----~p~v~~av~~ql~~~   62 (443)
T PRK07483         15 VAVAGEGIYLIDATGKR------YLDASGGAAVS----------------------CLGHS----HPRVIAAIHAQIDRL   62 (443)
T ss_pred             eEEeceEEEEEeCCCCE------EEEcCccHhhh----------------------ccCCC----CHHHHHHHHHHHHhc
Confidence            45566676667777777      88886664322                      11222    688999999999863


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC------CC-CeEEEcCCcCcch
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS------EN-DGILCPIPQYPLY  228 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~------~g-d~Vlv~~p~~~~~  228 (533)
                      .......|     ..+....+|+.+.....  ...++++++++|++|++.+++..+..      +| .+|+....+|++.
T Consensus        63 ~~~~~~~~-----~~~~~~~lae~L~~~~p--~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~  135 (443)
T PRK07483         63 AYAHTSFF-----TTEPAEALADRLVAAAP--AGLEHVYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGN  135 (443)
T ss_pred             cCcccccc-----CCHHHHHHHHHHHHhCC--CCCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCc
Confidence            21001111     12344456666654322  22468999999999999999987621      33 5689999999987


Q ss_pred             HHHHHHhCC-e------------EEEEecCCCCCCCC-----C--------HHHHHHHHHHHHhcCCCeeEEEEeCCCC-
Q 009517          229 SASIALHGG-T------------LVPYYLDEATGWGL-----E--------TSEVKKQLEAAKAKGITVRALVVINPGN-  281 (533)
Q Consensus       229 ~~~~~~~g~-~------------~~~v~~~~~~~~~l-----d--------~~~l~~~i~~~~~~g~~~~~iil~~p~N-  281 (533)
                      ......... .            +..++...  .|..     +        ++.+++.+...  ...++.+||++..+. 
T Consensus       136 t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~iAAvivEPiqg~  211 (443)
T PRK07483        136 TLGALAIGGNAWRREPFAPLLIEAHHVSPCY--AYREQRAGESDEAYGQRLADELEAKILEL--GPDTVAAFVAETVVGA  211 (443)
T ss_pred             CHHHhhhcCCcccccccCCCCCCCEEeCCCc--cccccccCCCHHHHHHHHHHHHHHHHHhc--CCCceEEEEEeCcccC
Confidence            643333211 1            11121110  0110     0        24556555421  123678888886664 


Q ss_pred             CCcc-CCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCC-e
Q 009517          282 PTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGK-R  359 (533)
Q Consensus       282 PtG~-~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~-r  359 (533)
                      -.|. .++++.+++|.++|++||+++|+||++++|...|.  +.     ..+..++.||     +.+++|.++  .|+ +
T Consensus       212 ~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~--~~-----a~~~~gv~PD-----iv~~gK~l~--gG~~P  277 (443)
T PRK07483        212 TAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGT--LF-----ACEEDGVAPD-----LVTIAKGLG--AGYQP  277 (443)
T ss_pred             cCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcH--HH-----HHhhcCCCCC-----eeeehhhhc--cCccc
Confidence            3454 66788899999999999999999999999866553  22     2222233788     667899995  486 9


Q ss_pred             eEEEEEecCCHHHHHHHHHh-----hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009517          360 GGYMEVTGFSAEVREQIYKV-----ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFN  434 (533)
Q Consensus       360 iG~v~~~~~~~~~~~~l~~~-----~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  434 (533)
                      +|.+++   .+++++.+...     ...|++.++++++++.+.|+.           .+ .+.+.++.+++.++|++.|+
T Consensus       278 i~av~~---~~~i~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~-----------i~-~~~l~~~~~~~g~~l~~~L~  342 (443)
T PRK07483        278 IGAVLA---SDRIYDAIADGSGFFQHGHTYLGHATACAAALAVQRV-----------IA-EDGLLANVRARGEQLRARLR  342 (443)
T ss_pred             cEEEEE---cHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHH-----------HH-hcCHHHHHHHHHHHHHHHHH
Confidence            999998   89998887532     236788999999999988841           11 13455666666677777775


Q ss_pred             c----CCCceEecCCceeEEecccCCCHHHHHHHHhcCCC----ChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEe
Q 009517          435 S----LEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTV----PDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTI  506 (533)
Q Consensus       435 ~----~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~  506 (533)
                      +    .|.+.-++..|.|+.+ .+..+...     ....+    ....++ +.+.++||++.+...-......+.+||.+
T Consensus       343 ~l~~~~~~i~~vRG~Glm~gi-e~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~Gll~~~~~~~~~~~~~~~l~~~P  415 (443)
T PRK07483        343 ERLGQHPHVGDIRGRGLFVGV-ELVADRAT-----KAPFDPALKLHARIK-REAMARGLMVYPMGGTIDGVRGDHVLLAP  415 (443)
T ss_pred             HHHhcCCCeeeEeecccEEEE-EEeecccc-----cCCCCchhhHHHHHH-HHHHHCCcEEEecCccccCCCCCEEEEEC
Confidence            4    3445557777766543 22111000     00000    012233 44556899998742110001124899998


Q ss_pred             c--CCcCcHHHHHHHHHHHHHHHHH
Q 009517          507 L--PQEDKIPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       507 ~--~~~e~i~~~~~~l~~~l~~~~~  529 (533)
                      .  +++++|++++++|+++++++..
T Consensus       416 pL~it~~eid~~~~~l~~~l~~~~~  440 (443)
T PRK07483        416 PFIITAAQIDEIVERLGDAIDAALA  440 (443)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            5  8999999999999999987654

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=99.88  E-value=1.1e-20  Score=196.90  Aligned_cols=369  Identities=12%  Similarity=0.103  Sum_probs=231.0

Q ss_pred             chHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhc
Q 009517           75 EIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQ  154 (533)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~  154 (533)
                      ..+.++++...++.||++      +||+..+....+                     ...      ++++++++.+++.+
T Consensus        56 ~~i~~a~G~~l~D~dG~~------ylD~~g~~~~~l---------------------Gh~------~p~v~~Ai~~ql~~  102 (459)
T PRK06082         56 DVLASAEGIYIEDVDGKK------YMDFHGNNVHQL---------------------GYG------HPHVIEKVKEQMAK  102 (459)
T ss_pred             ceEEeeeeeEEEECCCCE------EEEcccHhhccc---------------------CCC------CHHHHHHHHHHHHh
Confidence            355667776666667777      777752212111                     111      68999999999986


Q ss_pred             CCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCC-CeEEEcCCcCcchHHHHH
Q 009517          155 IPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-DGILCPIPQYPLYSASIA  233 (533)
Q Consensus       155 ~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vlv~~p~~~~~~~~~~  233 (533)
                      ... ....|     ..+....+++.+.+..+  ...+.+++++++++|++.+++.++...| .+|+....+|++......
T Consensus       103 ~~~-~~~~~-----~~~~~~~lae~L~~~~p--~~~~~v~f~~sGseAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~  174 (459)
T PRK06082        103 LPF-SPRRF-----TNETAIECAEKLTEIAG--GELNRVLFAPGGTSAIGMALKLARHITGNFKVVSLWDSFHGASLDAI  174 (459)
T ss_pred             CCC-ccCcc-----CCHHHHHHHHHHHHhCC--CCCCEEEECCCcHHHHHHHHHHHHHhcCCCEEEEEeCCCcCccHHHH
Confidence            321 11112     23444555555554432  2246899999999999999998753234 689999999998764333


Q ss_pred             Hh-CCe------------EEEEecCCCC--CCC-CC------HHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHH
Q 009517          234 LH-GGT------------LVPYYLDEAT--GWG-LE------TSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEEN  291 (533)
Q Consensus       234 ~~-g~~------------~~~v~~~~~~--~~~-ld------~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~  291 (533)
                      .. |..            +..+|.....  .|. .|      ++.+++.++.    ..++.+||++..++..+.+++++.
T Consensus       175 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~----~~~vAavIvEPv~g~g~~~~~~~y  250 (459)
T PRK06082        175 SVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEK----EGGIGAFIAEAVRNTDVQVPSKAY  250 (459)
T ss_pred             hhcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHhc----CCCEEEEEECCccCCCCcCCCHHH
Confidence            22 211            1112211000  011 01      2446666653    126778887766665566788899


Q ss_pred             HHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCC-CeeEEEEEecCCH
Q 009517          292 QRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFSA  370 (533)
Q Consensus       292 l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G-~riG~v~~~~~~~  370 (533)
                      +++|.++|++||+++|+||++++|...|.  ...     .+..++.||     +.+|+|.++  .| +++|.+++   .+
T Consensus       251 l~~lr~lc~~~g~llI~DEV~tG~GRtG~--~fa-----~e~~gv~PD-----iv~~gKgl~--gG~~P~~av~~---~~  313 (459)
T PRK06082        251 WKRVREICDKHNVLLIIDEIPNGMGRTGE--WFT-----HQAYGIEPD-----ILCIGKGLG--GGLVPIAAMIT---KD  313 (459)
T ss_pred             HHHHHHHHHHcCCEEEEechhhCCCccch--hhH-----hHhhCCCCC-----EEEeccccc--CCCCcceEEEE---cH
Confidence            99999999999999999999999765553  111     122233688     445899995  47 59999998   77


Q ss_pred             HHHHHHHHh-hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCceEecCC
Q 009517          371 EVREQIYKV-ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL----EGITCNKAE  445 (533)
Q Consensus       371 ~~~~~l~~~-~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~  445 (533)
                      ++....... ...|++.++++++++.+.|+           ..++ +.+.++.+++.++|.+.|+++    +.+.-++..
T Consensus       314 ~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~-----------~l~~-~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~  381 (459)
T PRK06082        314 KYNTAAQISLGHYTHEKSPLGCAAALATIE-----------VIEQ-EGLLEKVKADSQFMRERLLEMKAKYPLIGDVRGI  381 (459)
T ss_pred             HHHhhccCCCCCCCCCcCHHHHHHHHHHHH-----------HHHh-cCHHHHHHHHHHHHHHHHHHHHhhCCCeeeeeec
Confidence            776543211 12578899999999988874           2221 345666777777777777664    445567777


Q ss_pred             ceeEEecccCCCHHHHHHHHhcCC-CChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHH
Q 009517          446 GAMYLFPRIQLPEKAIKAAEAEKT-VPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTD  522 (533)
Q Consensus       446 gg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~  522 (533)
                      |.|+.+ .+..+...     .... .....++ ..+.++||++.+.       +.+.+|+++.  +++++|+++++++++
T Consensus       382 Gl~~~v-e~~~~~~~-----~~~~~~~~~~~~-~~~~~~Gvl~~~~-------~~~~i~~~Ppl~it~~eid~~~~~l~~  447 (459)
T PRK06082        382 GLLWGV-ELVTDRHT-----KERAYDEAEAVL-YRCLNNGLSFKVS-------QGNVIQLSPPLIITREELTQALAILEE  447 (459)
T ss_pred             cceeEE-EEccCccc-----cCccHHHHHHHH-HHHHhCCCEEEec-------CCCEEEEeCCCccCHHHHHHHHHHHHH
Confidence            776543 23211000     0000 0012233 3445789999862       1238999985  799999999999999


Q ss_pred             HHHHHHHHh
Q 009517          523 FHKNFMDKF  531 (533)
Q Consensus       523 ~l~~~~~~~  531 (533)
                      ++.++.+.+
T Consensus       448 ~l~~~~~~~  456 (459)
T PRK06082        448 AIAKICQDF  456 (459)
T ss_pred             HHHHHhhhc
Confidence            999886653

>PRK07481 hypothetical protein; Provisional

Probab=99.88  E-value=3.2e-20  Score=193.23  Aligned_cols=369  Identities=14%  Similarity=0.118  Sum_probs=230.8

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      ++.++++...++.||++      +||+..|....                      ..+++    ++++++++.+++.+.
T Consensus        27 ~i~~a~G~~l~D~dG~~------ylD~~~g~~~~----------------------~lGh~----~p~v~~Ai~~ql~~~   74 (449)
T PRK07481         27 IIVRGDGVYVYDIDGKK------LLDGVGGLWNV----------------------NVGHN----REEVKEAIVRQLDEL   74 (449)
T ss_pred             eEEeccccEEEeCCCCE------EEECchhHHhh----------------------cCCCC----CHHHHHHHHHHHHhc
Confidence            55667777777778877      77776553221                      11111    588999999999863


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC------CC-CeEEEcCCcCcch
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS------EN-DGILCPIPQYPLY  228 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~------~g-d~Vlv~~p~~~~~  228 (533)
                      ..  ...+.  .-..+.+..+|+.+.+..+ +-..++++++++|++|++.+++.++..      +| .+|+....+|++.
T Consensus        75 ~~--~~~~~--~~~~~~~~~lae~L~~~~~-~~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~  149 (449)
T PRK07481         75 EY--YSTFD--GTTHPRAIELSYELIDMFA-PEGMRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGT  149 (449)
T ss_pred             cc--eeccc--ccCCHHHHHHHHHHHHhcC-CCCCCEEEEcCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCc
Confidence            21  11110  0022344445555554332 112468999999999999999987521      23 5799999999997


Q ss_pred             HHHHHHhCCe-------------EEEEecCCC--CCCC-CCHHHHH--------HHHHHHHhcCCCeeEEEEeCCCCCCc
Q 009517          229 SASIALHGGT-------------LVPYYLDEA--TGWG-LETSEVK--------KQLEAAKAKGITVRALVVINPGNPTG  284 (533)
Q Consensus       229 ~~~~~~~g~~-------------~~~v~~~~~--~~~~-ld~~~l~--------~~i~~~~~~g~~~~~iil~~p~NPtG  284 (533)
                      .......+..             +..++....  ..|. -|++.++        +.|..  ..+.++.+|+++..+.-.|
T Consensus       150 t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~i~~--~~~~~iAAviiEPvqg~gG  227 (449)
T PRK07481        150 HFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDPEELARICARLLEREIAF--QGPDTIAAFIAEPVQGAGG  227 (449)
T ss_pred             chhhhccCCCcccccccCCCCCCCEEeCCCcccccccCCCCHHHHHHHHHHHHHHHHHh--cCCCcEEEEEEecccCCcC
Confidence            6533332211             111211100  0111 2444443        33321  1123688888887776677


Q ss_pred             c-CCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCC-CeeEE
Q 009517          285 Q-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG-KRGGY  362 (533)
Q Consensus       285 ~-~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G-~riG~  362 (533)
                      . .++++.+++|.++|++||+++|+||++++|...|.  ...     .+..++.||     +.+++|.++  .| +++|.
T Consensus       228 ~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~--~~a-----~~~~gv~PD-----iv~~gKgl~--gG~~Pi~a  293 (449)
T PRK07481        228 VIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGS--WFG-----SRGWGVKPD-----IMCLAKGIT--SGYVPLGA  293 (449)
T ss_pred             CccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCch--hhH-----hhhcCCCCC-----EEEEeeccc--CCCcCceE
Confidence            7 56778899999999999999999999999766553  111     222233688     567899995  47 59999


Q ss_pred             EEEecCCHHHHHHHHH--------hhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009517          363 MEVTGFSAEVREQIYK--------VASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFN  434 (533)
Q Consensus       363 v~~~~~~~~~~~~l~~--------~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  434 (533)
                      +++   .+++++.+..        ....|++.++++++++.+.|+.           .+ .+.+.++.+++.++|.+.|+
T Consensus       294 v~~---~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~-----------l~-~~~l~~~~~~~g~~l~~~L~  358 (449)
T PRK07481        294 TMV---NARIADAFEANADFGGAIMHGYTYSGHPVACAAALATLDI-----------VV-REDLPANAAKRGAYLLEGLQ  358 (449)
T ss_pred             EEE---cHHHHHHHhccCccccccccCCCCCCCHHHHHHHHHHHHH-----------HH-hhhHHHHHHHHHHHHHHHHH
Confidence            998   8999888753        1236788999999999988741           11 13455666677777777776


Q ss_pred             cC----CCceEecCCceeEEecccCCCHHHHHHHHhcCCC----ChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEe
Q 009517          435 SL----EGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTV----PDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTI  506 (533)
Q Consensus       435 ~~----~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~  506 (533)
                      ++    +-+..++..|.|+.+ .+..+...     +...+    ....+ ...+.++||++.+.       +. .+||++
T Consensus       359 ~l~~~~~~i~~vrG~Glm~gi-~l~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~Gvl~~~~-------g~-~i~l~P  423 (449)
T PRK07481        359 PLKERFELVGDVRGKGLMLAL-DLVADKAT-----REPIDPSKGYANAV-ADVARENGVLVRPS-------GT-KIILSP  423 (449)
T ss_pred             HHhhcCCCeEEEeecceEEEE-Eecccccc-----cCCCCchhHHHHHH-HHHHHhCCeEEEec-------CC-EEEEEC
Confidence            64    334556777765543 23211000     00000    01223 34456789999862       11 589997


Q ss_pred             c--CCcCcHHHHHHHHHHHHHHH
Q 009517          507 L--PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       507 ~--~~~e~i~~~~~~l~~~l~~~  527 (533)
                      .  +++++|++++++|+++++++
T Consensus       424 pl~it~~eid~~~~~l~~~l~~~  446 (449)
T PRK07481        424 PLVIQREDVDRIVDALDAGLSAV  446 (449)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhc
Confidence            5  79999999999999999765

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=99.88  E-value=1.4e-20  Score=195.31  Aligned_cols=365  Identities=15%  Similarity=0.102  Sum_probs=227.8

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      ++.++++...++.|+++      ++|+..|....                      ..+++    ++++++++.+++.+.
T Consensus        31 ~~~~a~G~~l~D~dG~~------ylD~~~g~~~~----------------------~lGh~----~p~v~~ai~~ql~~l   78 (442)
T PRK13360         31 LLVAAKGMYYTTHDGRR------VLDGTAGLWCV----------------------NAGHG----RPEIVEAVRAQAGEL   78 (442)
T ss_pred             eEEeeeeeEEEeCCCCE------EEECchhHHHh----------------------ccCCC----CHHHHHHHHHHHHhC
Confidence            55667777667777777      77776553221                      11111    688999999999863


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC------C-CCeEEEcCCcCcch
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS------E-NDGILCPIPQYPLY  228 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~------~-gd~Vlv~~p~~~~~  228 (533)
                      ..  ...+.   -..+....+|+.+.+...  ...+.|+++++|++|++.+++..+..      + ..+|+....+|++.
T Consensus        79 ~~--~~~~~---~~~~~~~~la~~l~~~~p--~~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~  151 (442)
T PRK13360         79 DY--APAFQ---MGHPKAFELANRIAEIAP--GGLNHVFFTNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGV  151 (442)
T ss_pred             CC--cccCC---cCCHHHHHHHHHHHHhCC--CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCc
Confidence            21  11111   112334455555554321  12468999999999999999987521      2 25799999999997


Q ss_pred             HHHHHHh-CC------------eEEEEecCC---CCCCCC--------CHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCc
Q 009517          229 SASIALH-GG------------TLVPYYLDE---ATGWGL--------ETSEVKKQLEAAKAKGITVRALVVINPGNPTG  284 (533)
Q Consensus       229 ~~~~~~~-g~------------~~~~v~~~~---~~~~~l--------d~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG  284 (533)
                      ....... |.            .+..+|...   ...|..        ..+.+++.++..  ...++.+|+++..+...|
T Consensus       152 t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~~aavivEpi~g~~G  229 (442)
T PRK13360        152 GFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEHGAELADELERLVTLH--DASTIAAVIVEPVAGSTG  229 (442)
T ss_pred             cHhhhhccCChhhhhccCCCCCCCEEeCCCchhhccccCCChHHHHHHHHHHHHHHHHhc--CCCcEEEEEEccccCCCC
Confidence            5432221 11            112223221   001111        145677777532  123677787777677778


Q ss_pred             cC-CCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCC-CeeEE
Q 009517          285 QV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG-KRGGY  362 (533)
Q Consensus       285 ~~-~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G-~riG~  362 (533)
                      .+ ++++.+++|.++|++||+++|+||++++|...|.  ...     .+..++.||     +.+|+|.++  .| +++|.
T Consensus       230 ~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~--~~a-----~~~~gv~PD-----ivt~gK~l~--gG~~P~ga  295 (442)
T PRK13360        230 VLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGA--PFA-----AQYFGVTPD-----LLTCAKGLT--NGAIPMGA  295 (442)
T ss_pred             CccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCcc--chh-----hhhcCCCCc-----eeeeeeccc--cCccceEE
Confidence            75 6778899999999999999999999999765553  111     122223677     558999994  36 79999


Q ss_pred             EEEecCCHHHHHHHHHh--------hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009517          363 MEVTGFSAEVREQIYKV--------ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFN  434 (533)
Q Consensus       363 v~~~~~~~~~~~~l~~~--------~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  434 (533)
                      +++   ++++++.+...        ...+++.++++++++.+.|+           ..++ +.+.++.+++.+++++.|+
T Consensus       296 v~~---~~~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~-----------~l~~-~~l~~~~~~~g~~l~~~l~  360 (442)
T PRK13360        296 VFV---SSEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLD-----------LYER-EGLLTRAARLAPYWEDALH  360 (442)
T ss_pred             EEE---cHHHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHH-----------HHHh-CCHHHHHHHHHHHHHHHHH
Confidence            988   89998877531        23578889999999988874           2221 2455666777777777777


Q ss_pred             cC---CCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CC
Q 009517          435 SL---EGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQ  509 (533)
Q Consensus       435 ~~---~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~  509 (533)
                      ++   +.+.-++..|.+.. +.+.....       ........++. .+.++||++.++       + +.+||++.  ++
T Consensus       361 ~l~~~~~v~~vrG~Gl~~~-~~l~~~~~-------~~~~~~~~~~~-~l~~~Gvl~~~~-------~-~~lr~~Ppl~~t  423 (442)
T PRK13360        361 SLRDAPHVIDIRNLGLVGA-VELAPRDG-------KPGKRAYEVFL-KCFEKGLMIRYT-------G-DILALSPPLIIE  423 (442)
T ss_pred             HhhcCCCeeeeeccceEEE-EEEecCCC-------CcchhHHHHHH-HHHHCCcEEEec-------C-CEEEEeCCCccC
Confidence            64   33444555665432 22211000       00001123333 455689999752       1 27999974  89


Q ss_pred             cCcHHHHHHHHHHHHHHH
Q 009517          510 EDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       510 ~e~i~~~~~~l~~~l~~~  527 (533)
                      +++|++++++|+++++++
T Consensus       424 ~~eid~~~~~l~~~l~~~  441 (442)
T PRK13360        424 EAQIDELFDILAQALKET  441 (442)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999999998764

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.88  E-value=1.4e-20  Score=196.17  Aligned_cols=370  Identities=12%  Similarity=0.057  Sum_probs=231.1

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      .+.++++...++.||++      +||+..|....                      ..+++    ++++++++.+++.+.
T Consensus        49 ~i~~a~G~~l~D~dG~~------ylD~~~g~~~~----------------------~lGh~----~p~i~~Ai~~q~~~l   96 (472)
T PRK08742         49 PIARGEGAWLVGHDGRR------YLDAVSSWWTN----------------------LFGHA----EPRIGAAIAAQAGEL   96 (472)
T ss_pred             eEEecccCEEEeCCCCE------EEEcCccHHhc----------------------cCCCC----CHHHHHHHHHHHHhC
Confidence            35677777777777777      77876553221                      11111    588999999998753


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCC---CCCCCEEEcCChHHHHHHHHHHhccC------CC-CeEEEcCCcC
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFP---ADPNDIFLTDGASPAVHMMMQLLIRS------EN-DGILCPIPQY  225 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~---~~~~~i~~t~G~~~al~~~~~~l~~~------~g-d~Vlv~~p~~  225 (533)
                      .......+.     .+.+..+++.+.......   ...+.|+++++|++|++.+++..+..      +| .+|+....+|
T Consensus        97 ~~~~~~~~~-----~~~~~~lae~L~~~~p~~~~~~~~~~v~f~~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~sy  171 (472)
T PRK08742         97 EQVMLAGFT-----HEPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGY  171 (472)
T ss_pred             CCccccccC-----CHHHHHHHHHHHHhCCCcccCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCc
Confidence            210111122     233455666665432210   12468999999999999999988521      22 6799999999


Q ss_pred             cchHHHHHHhCCe-------------EEEEecCCCC--CCCC--------CHHHHHHHHHHHHhcCCCeeEEEEeC-CCC
Q 009517          226 PLYSASIALHGGT-------------LVPYYLDEAT--GWGL--------ETSEVKKQLEAAKAKGITVRALVVIN-PGN  281 (533)
Q Consensus       226 ~~~~~~~~~~g~~-------------~~~v~~~~~~--~~~l--------d~~~l~~~i~~~~~~g~~~~~iil~~-p~N  281 (533)
                      ++....+...+..             +..+|.....  .++.        +++.+++.+...   +.++.+||++. .++
T Consensus       172 HG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~iAAvI~EPviqg  248 (472)
T PRK08742        172 HGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYALQAADALQALFEQS---PGEICALILEPRLQC  248 (472)
T ss_pred             CCCchhhhhccCCcccccccCCCCCCCEEeCCCCccccccCCCHHHHHHHHHHHHHHHHHhC---CCceEEEEEcccccc
Confidence            9976544433211             1122221100  0111        245666666531   23788888876 466


Q ss_pred             CCcc-CCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCC-e
Q 009517          282 PTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGK-R  359 (533)
Q Consensus       282 PtG~-~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~-r  359 (533)
                      -.|. .++++.+++|.++|++||+++|+||++++|...|.  +..+     +..++.||     +.+++|.++  .|+ +
T Consensus       249 ~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~--~~a~-----e~~gv~PD-----iv~~gKgl~--gG~~P  314 (472)
T PRK08742        249 AGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGT--LFAC-----EQAGVMPD-----LLCLSKGLT--GGFLP  314 (472)
T ss_pred             CCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCcc--chHH-----HhcCCCCC-----EEEEccccc--CCCCC
Confidence            6776 66788899999999999999999999999876663  2222     22233788     667899995  484 9


Q ss_pred             eEEEEEecCCHHHHHHHHH-------hhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009517          360 GGYMEVTGFSAEVREQIYK-------VASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDA  432 (533)
Q Consensus       360 iG~v~~~~~~~~~~~~l~~-------~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  432 (533)
                      +|.+++   ++++++.+..       ....|++.++++++++.+.|+-           .++ +.+.++.+++.+++.+.
T Consensus       315 laav~~---~~ei~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~-----------i~~-~~l~~~~~~~g~~l~~~  379 (472)
T PRK08742        315 LSAVLA---TQQLYDAFLDDSRERAFLHSHSYTGNPLACAAALATLDI-----------FAD-DDVIARNQPTAARMTQL  379 (472)
T ss_pred             cceeec---cHHHHHHhhccCccCccCcCCCCCccHHHHHHHHHHHHH-----------HHH-CCHHHHHHHHHHHHHHH
Confidence            999998   9999887742       1236788999999999988852           111 22334444444444444


Q ss_pred             H---hcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCCh---HHHHHHHHHccceEEEcCCCCCCCCCCceEEEEe
Q 009517          433 F---NSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPD---AFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTI  506 (533)
Q Consensus       433 L---~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~  506 (533)
                      +   .+.+.+.-++..|.|+.+- +..+..     .+.....+   ...+.+.+.++||++.+.       | +.|||.+
T Consensus       380 ~~~~~~~~~i~dvRG~Gl~~gie-l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Gll~~~~-------g-~vi~~~P  445 (472)
T PRK08742        380 AAQIGEHPHVADVRQAGMVVAFE-LTRGGN-----KRTPFPPAARVGLHAYRAALARGVVLRPL-------G-DVLYWMP  445 (472)
T ss_pred             HHHHhcCCCeeeEeccceEEEEE-eccCcc-----ccccCCchhHHHHHHHHHHHHCCeEEEec-------C-CEEEEEC
Confidence            3   3345566678888765542 221100     00000001   112234455789999862       1 2899999


Q ss_pred             c--CCcCcHHHHHHHHHHHHHHHH
Q 009517          507 L--PQEDKIPAIVTRLTDFHKNFM  528 (533)
Q Consensus       507 ~--~~~e~i~~~~~~l~~~l~~~~  528 (533)
                      .  +++++|++++++|+++++++.
T Consensus       446 pL~it~~ei~~~~~~l~~~l~~~~  469 (472)
T PRK08742        446 PYCVDEAQLALLADTTRHAIDEAV  469 (472)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHh
Confidence            5  899999999999999998753

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=99.88  E-value=3e-20  Score=190.18  Aligned_cols=193  Identities=13%  Similarity=0.168  Sum_probs=149.5

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHh-ccCCCCeEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL-IRSENDGIL  219 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~~gd~Vl  219 (533)
                      .++.++++.+.+..    ....+++  ...+|++++|++++        .++++.++|+++|+.+++.++ + ++||+|+
T Consensus        13 ~~~e~~~~~~~l~~----~~~~~g~--~~~~le~~la~~~g--------~~~~v~~~sgt~al~lal~al~~-~~Gd~Vi   77 (379)
T PRK11658         13 GDEELAAVKEVLRS----GWITTGP--KNQALEQAFCQLTG--------NQHAIAVSSATAGMHITLMALGI-GPGDEVI   77 (379)
T ss_pred             CHHHHHHHHHHHHc----CCccCCH--hHHHHHHHHHHHhC--------CCeEEEECCHHHHHHHHHHHcCC-CCCCEEE
Confidence            56778888887765    2332333  37899999999985        246888999999999999998 6 7999999


Q ss_pred             EcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHH
Q 009517          220 CPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC  299 (533)
Q Consensus       220 v~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~  299 (533)
                      ++.|+|..+...+...|++++.++++.+ +|.+|++.+++++++      ++++|+   |+||+|...+   +++|.++|
T Consensus        78 v~~~~~~~~~~~~~~~G~~~v~vd~~~~-~~~~d~~~l~~~i~~------~tkav~---~~~~~G~~~d---~~~i~~~a  144 (379)
T PRK11658         78 TPSLTWVSTLNMIVLLGATPVMVDVDRD-TLMVTPEAIEAAITP------RTKAII---PVHYAGAPAD---LDAIRAIG  144 (379)
T ss_pred             ECCCcHHHHHHHHHHcCCEEEEEecCCC-cCCcCHHHHHHhccc------CCeEEE---EeCCCCCcCC---HHHHHHHH
Confidence            9999999999999999999999998754 678999999999976      789887   5567999877   88999999


Q ss_pred             HHcCCEEEEccccc-cccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHH
Q 009517          300 KKEGLVLLADEVYQ-ENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYK  378 (533)
Q Consensus       300 ~~~~~~lI~De~y~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~  378 (533)
                      +++|+++|+|++|+ +..+.+. .          +   ...+  +.+.||++.- .+++.+.|+++.  .++++.+.++.
T Consensus       145 ~~~gi~vi~D~a~a~g~~~~~~-~----------~---g~~g--~~~~Sf~~~K-~l~~g~GG~v~~--~~~~~~~~~~~  205 (379)
T PRK11658        145 ERYGIPVIEDAAHAVGTYYKGR-H----------I---GARG--TAIFSFHAIK-NITCAEGGLVVT--DDDELADRLRS  205 (379)
T ss_pred             HHcCCeEEEECCCccCCeECCe-e----------c---CCCC--CEEEeCCCCC-cCcccCceEEEE--CCHHHHHHHHH
Confidence            99999999999997 3344331 1          0   0111  1256777544 456778998886  35888888776


Q ss_pred             hh
Q 009517          379 VA  380 (533)
Q Consensus       379 ~~  380 (533)
                      +.
T Consensus       206 ~~  207 (379)
T PRK11658        206 LK  207 (379)
T ss_pred             HH
Confidence            54

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=99.88  E-value=2.2e-20  Score=193.23  Aligned_cols=162  Identities=18%  Similarity=0.172  Sum_probs=129.4

Q ss_pred             cccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcch----HHHHHHhC
Q 009517          161 GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLY----SASIALHG  236 (533)
Q Consensus       161 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~----~~~~~~~g  236 (533)
                      ..|+.+. ..+|++.+|++++        .+..+++++|++|+..++..++ .+||+|+++.+.|++.    ...+...|
T Consensus        52 sr~~~p~-~~~le~~lA~l~g--------~~~~v~~~sG~~Ai~~al~~l~-~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G  121 (418)
T TIGR01326        52 SRLMNPT-TDVLEQRIAALEG--------GVAALAVASGQAAITYAILNLA-QAGDNIVSSSYLYGGTYNLFKHTLKRLG  121 (418)
T ss_pred             ECCCChh-HHHHHHHHHHHhC--------CCeEEEEccHHHHHHHHHHHHh-CCCCEEEEECCCcHHHHHHHHHHHHHcC
Confidence            3344433 6788899988864        3568899999999999999888 7999999999988653    34456789


Q ss_pred             CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEcccccccc
Q 009517          237 GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENV  316 (533)
Q Consensus       237 ~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~  316 (533)
                      ++++.++.+       |++++++++++      ++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|....
T Consensus       122 ~~v~~v~~~-------d~~~l~~~l~~------~t~~V~le~p~NPtg~v~d---l~~I~~la~~~~i~livD~t~~~~~  185 (418)
T TIGR01326       122 IEVRFVDPD-------DPEEFEKAIDE------NTKAVFAETIGNPAINVPD---IEAIAEVAHAHGVPLIVDNTFATPY  185 (418)
T ss_pred             cEEEEECCC-------CHHHHHHhcCc------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCchhh
Confidence            999888742       78999999976      7999999999999999987   8899999999999999999996421


Q ss_pred             ccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEE
Q 009517          317 YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV  365 (533)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~  365 (533)
                      + .    .+   +  .      .+..|++.|+||.+ +.+|+|+||+++
T Consensus       186 ~-~----~~---l--~------~g~Divv~S~sK~l-~g~G~~lGg~v~  217 (418)
T TIGR01326       186 L-C----RP---I--D------HGADIVVHSATKYI-GGHGTAIGGVIV  217 (418)
T ss_pred             c-C----Cc---h--h------cCCeEEEECccccc-cCCccceEEEEE
Confidence            1 1    01   1  1      11348899999999 678999999988

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.88  E-value=2.1e-20  Score=195.02  Aligned_cols=367  Identities=12%  Similarity=0.101  Sum_probs=234.1

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      ++.++++...++.||++      +||+..|....                      ..+++    ++++++++.+++.+.
T Consensus        41 ~i~~a~G~~l~D~dG~~------ylD~~~g~~~~----------------------~lGh~----~p~v~~Ai~~ql~~l   88 (460)
T PRK06916         41 IIERGEGRKLYDVNGNE------YYDGVSSIWLN----------------------VHGHQ----VPELDEAIREQLNKI   88 (460)
T ss_pred             eEEeccccEEEeCCCCE------EEEcchhHHHh----------------------hcCCC----CHHHHHHHHHHHHhC
Confidence            56777777777778877      77775553221                      11111    688999999999874


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc------CCC-CeEEEcCCcCcch
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR------SEN-DGILCPIPQYPLY  228 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~------~~g-d~Vlv~~p~~~~~  228 (533)
                      ...... +..    .+.+..+|+.+.+...  ...+.++++++|++|++.+++..+.      .+| .+|+....+|++.
T Consensus        89 ~~~~~~-~~~----~~~~~~lae~L~~~~p--~~~~~v~f~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~  161 (460)
T PRK06916         89 AHSTLL-GLA----NVPSILLAEKLIEVVP--EGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGD  161 (460)
T ss_pred             CCcccc-ccC----CHHHHHHHHHHHHhCC--CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcc
Confidence            210111 111    2333445555544322  2236899999999999999998762      133 6899999999996


Q ss_pred             HHHHHHhCCe-------------EEEEecCCC--CCCC--------CCHHHHHHHHHHHHhcCCCeeEEEEeC-CCCCCc
Q 009517          229 SASIALHGGT-------------LVPYYLDEA--TGWG--------LETSEVKKQLEAAKAKGITVRALVVIN-PGNPTG  284 (533)
Q Consensus       229 ~~~~~~~g~~-------------~~~v~~~~~--~~~~--------ld~~~l~~~i~~~~~~g~~~~~iil~~-p~NPtG  284 (533)
                      ...+...+..             +..+|....  ..++        -+++.+++.++..   +.++.+||++. .+.-.|
T Consensus       162 t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~iAAvi~EP~iqg~gG  238 (460)
T PRK06916        162 TIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLKEK---HEEIAAIIVEPLVQGAGG  238 (460)
T ss_pred             cHHhHhccCCcccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHhC---CCcEEEEEEeccccCCCC
Confidence            6544332211             122221100  0011        1345666666532   34788888887 576677


Q ss_pred             cC-CCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCC-CeeEE
Q 009517          285 QV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG-KRGGY  362 (533)
Q Consensus       285 ~~-~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G-~riG~  362 (533)
                      ++ ++++.|++|.++|++||+++|+||++++|...|.  ..     ..+..++.||     +.+++|.++  .| +++|.
T Consensus       239 ~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~--~~-----a~~~~gv~PD-----iv~~gK~l~--gG~~Pi~a  304 (460)
T PRK06916        239 MITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGK--MF-----ACEHENVTPD-----IMTAGKGLT--GGYLPIAI  304 (460)
T ss_pred             cccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCch--hh-----HHHhcCCCCC-----eeeeehhhh--cCccccce
Confidence            64 6888899999999999999999999999765553  11     2222233688     557899995  48 59999


Q ss_pred             EEEecCCHHHHHHHHH--------hhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009517          363 MEVTGFSAEVREQIYK--------VASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFN  434 (533)
Q Consensus       363 v~~~~~~~~~~~~l~~--------~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  434 (533)
                      +++   .+++++.+..        ....|++.++++++++.+.|+           ..++ +.+.++.+++.+++++.|+
T Consensus       305 v~~---~~ei~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~-----------~l~~-~~l~~~~~~~g~~l~~~l~  369 (460)
T PRK06916        305 TVT---TDEIYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALANLE-----------LYEK-TNLIEQVARKTEYVATQLE  369 (460)
T ss_pred             eee---cHHHHHHhhccccccCccccCCCCCCCHHHHHHHHHHHH-----------HHHh-ccHHHHHHHHHHHHHHHHH
Confidence            998   8999887642        123578889999999988874           1111 3455667777777777777


Q ss_pred             cC---CCceEecCCceeEEecccCCCHHHHHHHHhcCCCC----hHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec
Q 009517          435 SL---EGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVP----DAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL  507 (533)
Q Consensus       435 ~~---~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~  507 (533)
                      ++   +.+.-++..|.|+.+ .+..+...     +.....    ...++ ..+.++||++.|.       + +.+|+.+.
T Consensus       370 ~l~~~~~v~~vrG~Glm~gi-el~~~~~~-----~~~~~~~~~~~~~i~-~~~~~~Gvl~~~~-------g-~~l~~~Pp  434 (460)
T PRK06916        370 DLFALKHVGDIRQLGLMVGI-ELVKNKET-----KEPFEWTERVGVQVC-KRSRELGMLTRPL-------G-NTIVFMPP  434 (460)
T ss_pred             HhhcCCCeEEeecCCceeeE-Eeeccccc-----ccCCCchhhHHHHHH-HHHHHCCeEEEec-------C-CEEEEeCC
Confidence            65   445557777766543 22211100     000000    12333 4456789999862       1 27888864


Q ss_pred             --CCcCcHHHHHHHHHHHHHHHH
Q 009517          508 --PQEDKIPAIVTRLTDFHKNFM  528 (533)
Q Consensus       508 --~~~e~i~~~~~~l~~~l~~~~  528 (533)
                        +++++|++++++|+++++++.
T Consensus       435 l~it~~~id~~~~~l~~~l~~~~  457 (460)
T PRK06916        435 LASTIDELDEMLRILYKAISDVT  457 (460)
T ss_pred             cccCHHHHHHHHHHHHHHHHhhc
Confidence              899999999999999998754

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=99.88  E-value=7.5e-20  Score=186.00  Aligned_cols=213  Identities=13%  Similarity=0.116  Sum_probs=156.0

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHH----HHHhCCeEEEEec
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS----IALHGGTLVPYYL  244 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~----~~~~g~~~~~v~~  244 (533)
                      ...|++++|++.+        .+++++++|+++|+..++..++ ++||+|++++|.|+.....    +...|.++..++.
T Consensus        52 ~~~lE~~lA~l~g--------~~~~~~~~sG~~Ai~~al~all-~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~d~  122 (377)
T TIGR01324        52 HFALQDAMCELEG--------GAGCYLYPSGLAAVTNSILAFV-KAGDHVLMVDSAYEPTRYFCDIVLKRMGVDITYYDP  122 (377)
T ss_pred             HHHHHHHHHHHhC--------CCcEEEECcHHHHHHHHHHHhc-CCCCEEEEcCCCcHHHHHHHHHHHHhcCcEEEEECC
Confidence            4689999998864        4689999999999999999998 8999999999999876543    3456887776643


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcc
Q 009517          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (533)
Q Consensus       245 ~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~  324 (533)
                      .       +.+.+++++++      ++|+|++++|+||+|.+.+   +++|+++|+++|+++|+|++|..... .. +  
T Consensus       123 ~-------~~e~l~~~i~~------~tklV~lesp~Np~g~~~d---l~~I~~la~~~g~~livD~t~a~g~~-~~-p--  182 (377)
T TIGR01324       123 L-------IGEDIATLIQP------NTKVLFLEAPSSITFEIQD---IPAIAKAARNPGIVIMIDNTWAAGLL-FK-P--  182 (377)
T ss_pred             C-------CHHHHHHhcCC------CceEEEEECCCCCCCcHHH---HHHHHHHHHHcCCEEEEECCCccccc-cC-c--
Confidence            2       23788888876      7999999999999988765   99999999999999999999975322 11 1  


Q ss_pred             cHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCC
Q 009517          325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKV  403 (533)
Q Consensus       325 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~  403 (533)
                          +  ++   ..|   |++.|++|.++|..+...|++++   +++.++.+..... ...+.++.....+...+     
T Consensus       183 ----l--~~---gaD---ivv~S~tK~l~G~~d~~gG~v~~---~~~~~~~l~~~~~~~G~~l~p~~a~~~~rgl-----  242 (377)
T TIGR01324       183 ----L--EH---GVD---ISIQAGTKYLVGHSDIMIGTVVA---NARTWDQLREHSYLMGQMVDADDAYTTLRGL-----  242 (377)
T ss_pred             ----c--cc---Cce---EEEecCceeccCCCCceEEEEEe---CHHHHHHHHHHHHHhCCCCCHHHHHHHHhhh-----
Confidence                0  11   233   88999999997666688998887   7777776664333 33445565555444443     


Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 009517          404 GDESYESYCAERDGILSSLARRAKTLEDAFNSLEGI  439 (533)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~  439 (533)
                               +.+....++..++...+.+.|++.|.+
T Consensus       243 ---------~tl~~R~~~~~~~a~~la~~L~~~p~v  269 (377)
T TIGR01324       243 ---------RTLGVRLKQHQESSLAIAKWLSEQPEV  269 (377)
T ss_pred             ---------hhHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence                     233444555666666788888776543

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK08064 cystathionine beta-lyase; Provisional

Probab=99.88  E-value=4.4e-20  Score=189.16  Aligned_cols=212  Identities=17%  Similarity=0.187  Sum_probs=150.5

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchH----HHHHHhCCeEEEEec
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS----ASIALHGGTLVPYYL  244 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~----~~~~~~g~~~~~v~~  244 (533)
                      ..+|++.+|++.+      .+ +.+++ ++|+.++..++. ++ .+||+|+++.|.|++..    ..+...|++++.++.
T Consensus        56 ~~~le~~lA~l~g------~~-~~v~~-~sG~~ai~~~l~-~l-~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~~  125 (390)
T PRK08064         56 REALEDIIAELEG------GT-KGFAF-ASGMAAISTAFL-LL-SKGDHVLISEDVYGGTYRMITEVLSRFGIEHTFVDM  125 (390)
T ss_pred             HHHHHHHHHHHhC------CC-CeEEE-CCHHHHHHHHHH-Hh-CCCCEEEEccCccchHHHHHHHHHHHcCCEEEEECC
Confidence            6788999998875      22 34555 445678888886 55 68999999999998533    445568999998875


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcc
Q 009517          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (533)
Q Consensus       245 ~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~  324 (533)
                      .       |++++++++++      ++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|......  .+  
T Consensus       126 ~-------d~~~l~~~l~~------~tklV~l~~p~NptG~~~d---l~~I~~la~~~g~~vvvD~a~~~~~~~--~~--  185 (390)
T PRK08064        126 T-------NLEEVAQNIKP------NTKLFYVETPSNPLLKVTD---IRGVVKLAKAIGCLTFVDNTFLTPLLQ--KP--  185 (390)
T ss_pred             C-------CHHHHHHhcCC------CceEEEEECCCCCCcEecc---HHHHHHHHHHcCCEEEEECCCCccccc--Cc--
Confidence            3       68999998876      7999999999999999987   889999999999999999999763321  11  


Q ss_pred             cHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCC
Q 009517          325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKV  403 (533)
Q Consensus       325 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~  403 (533)
                       +     ++   ..|   +++.|++|.++|.+|...|++++  .++++++.+..... .....++..+..+..-+     
T Consensus       186 -~-----~~---g~D---ivv~S~tK~~~G~~~~laG~~v~--~~~~~~~~l~~~~~~~g~~~~~~~a~l~~~gl-----  246 (390)
T PRK08064        186 -L-----DL---GAD---VVLHSATKFLAGHSDVLAGLAVV--KDEELAQKLYFLQNSFGAVLGVQDCWLVLRGL-----  246 (390)
T ss_pred             -h-----hh---CCc---EEEeecceeccCCccceeEEEEe--CCHHHHHHHHHHHHhcCCCCCHHHHHHHHccc-----
Confidence             1     11   123   78999999986656677787776  36788888887765 23333444444332222     


Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 009517          404 GDESYESYCAERDGILSSLARRAKTLEDAFNSLEG  438 (533)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  438 (533)
                               +.+....++..+++..+.+.|++.|.
T Consensus       247 ---------~tl~~R~~~~~~~a~~la~~L~~~~~  272 (390)
T PRK08064        247 ---------KTLHVRLEHSSETANKIALYLQEHPK  272 (390)
T ss_pred             ---------CcHHHHHHHHHHHHHHHHHHHhcCCC
Confidence                     22334445556667777788877643

>PRK06105 aminotransferase; Provisional

Probab=99.88  E-value=1.5e-20  Score=196.10  Aligned_cols=371  Identities=13%  Similarity=0.068  Sum_probs=234.6

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      ++.++++...++.||++      +||+..|....                      ..+++    ++++++++.+++.+.
T Consensus        33 ~~~~a~G~~l~D~dG~~------ylD~~~g~~~~----------------------~lGh~----~p~i~~Ai~~q~~~~   80 (460)
T PRK06105         33 VIERGEGIYVYDDAGKR------YIEGMAGLWSV----------------------ALGFS----EQRLVEAAARQMKKL   80 (460)
T ss_pred             eEEeeeEEEEEECCCCE------EEEcchhHHhc----------------------cCCCC----CHHHHHHHHHHHHhC
Confidence            55667777777777777      88876664332                      11222    689999999999873


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc------CCC-CeEEEcCCcCcch
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR------SEN-DGILCPIPQYPLY  228 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~------~~g-d~Vlv~~p~~~~~  228 (533)
                      ..  ...+  .....+.+.++++.+.+...  ...++|+++++|++|++.+++.+..      .+| .+|+....+|++.
T Consensus        81 ~~--~~~~--~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~  154 (460)
T PRK06105         81 PF--YHTF--SHKSHGPVIDLAEKLVAMAP--VPMSKVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGV  154 (460)
T ss_pred             CC--eecc--cccCCHHHHHHHHHHHHhCC--CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCc
Confidence            21  1111  11123444445565554432  2346899999999999999998631      123 5788889999987


Q ss_pred             HHHHHHh-CCe------------EEEEecCCCCCCC-----------CCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCc
Q 009517          229 SASIALH-GGT------------LVPYYLDEATGWG-----------LETSEVKKQLEAAKAKGITVRALVVINPGNPTG  284 (533)
Q Consensus       229 ~~~~~~~-g~~------------~~~v~~~~~~~~~-----------ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG  284 (533)
                      ....... +..            +..++......+.           ...+++++.+...  ...++.+||++..+.-.|
T Consensus       155 t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~~~~~--~~~~iAavIvEPiqg~gG  232 (460)
T PRK06105        155 TIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFATRLANELEALILAE--GPDTIAAFIGEPVMGAGG  232 (460)
T ss_pred             chhheeccCCcccccccCCCCCCCEEcCCCcccccccCCCChHHHHHHHHHHHHHHHHHc--CCCceEEEEEccccCCCC
Confidence            6433222 111            1111111000000           0135667666432  113678888887776667


Q ss_pred             cC-CCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCC-CeeEE
Q 009517          285 QV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG-KRGGY  362 (533)
Q Consensus       285 ~~-~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G-~riG~  362 (533)
                      .. ++++.+++|.++|++||+++|+||++++|...|.  ...+     +..++.||     +.+|+|.++  .| +++|+
T Consensus       233 ~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~--~f~~-----~~~~v~PD-----i~~~gK~lg--gG~~P~~a  298 (460)
T PRK06105        233 VIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGN--MFGC-----ETFGIKPD-----ILVMSKQLS--SSYQPLSA  298 (460)
T ss_pred             CccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCch--hhhH-----HhcCCCCC-----eeeeecccc--cCcccceE
Confidence            64 6888899999999999999999999999866553  2221     22233688     668999994  36 69999


Q ss_pred             EEEecCCHHHHHHHHHh--------hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009517          363 MEVTGFSAEVREQIYKV--------ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFN  434 (533)
Q Consensus       363 v~~~~~~~~~~~~l~~~--------~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  434 (533)
                      +++   ++++++.+...        ...|++.++++++++.+.|+           ..++ +.+.+..+++.++|.+.|+
T Consensus       299 v~~---~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~-----------~i~~-~~l~~~v~~~g~~l~~~L~  363 (460)
T PRK06105        299 VLM---NEKVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLA-----------IIEE-RDLVGNAAERGARLQARLR  363 (460)
T ss_pred             EEE---cHHHHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHH-----------HHHh-ccHHHHHHHHHHHHHHHHH
Confidence            998   89998877531        23678899999999988874           2221 3455666777777777776


Q ss_pred             cC---CCceEecCCceeEEecccCCCHHHHHHHHhcCCCC----hHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec
Q 009517          435 SL---EGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVP----DAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL  507 (533)
Q Consensus       435 ~~---~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~  507 (533)
                      ++   |.+.-++..|.|+.+ .+..+..     .+.+...    ...+ ...+.++||++.|.   +     +.+||++.
T Consensus       364 ~l~~~~~v~~vrG~Gl~~gi-e~~~~~~-----~~~~~~~~~~~a~~i-~~~~~~~Gvl~~~~---g-----~~i~l~Pp  428 (460)
T PRK06105        364 ALADHPLVGEVRGVGLIAAV-ELVADKA-----TKTPFEPPGKVGARA-NAAAHEHGVISRAM---G-----DTLAFCPP  428 (460)
T ss_pred             HhhcCCCeEEEEecceEEEE-EEecCcc-----cCCCCCchhHHHHHH-HHHHHHCCeEEEec---C-----CEEEEECC
Confidence            64   445556777765443 2221100     0000000    1223 34456789999862   1     27899985


Q ss_pred             --CCcCcHHHHHHHHHHHHHHHHHH
Q 009517          508 --PQEDKIPAIVTRLTDFHKNFMDK  530 (533)
Q Consensus       508 --~~~e~i~~~~~~l~~~l~~~~~~  530 (533)
                        +++++|+++++++.++++++.+.
T Consensus       429 l~it~~eid~~~~~l~~~l~~~~~~  453 (460)
T PRK06105        429 LIITAAQVDEMVDRFGRALDDVAAW  453 (460)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHH
Confidence              79999999999999999987653

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=99.88  E-value=3.4e-20  Score=191.34  Aligned_cols=357  Identities=13%  Similarity=0.080  Sum_probs=228.1

Q ss_pred             HHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCC
Q 009517           77 VSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIP  156 (533)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~  156 (533)
                      ..++++...++.||++      ++|+..|....                      ..+++    ++++++++.+++.+..
T Consensus        29 i~~a~G~~l~D~dG~~------ylD~~~g~~~~----------------------~lGh~----~p~i~~Ai~~q~~~~~   76 (428)
T PRK07986         29 VVSAEGCELILADGRR------LVDGMSSWWAA----------------------IHGYN----HPQLNAAMKSQIDAMS   76 (428)
T ss_pred             EEeeeeeEEEeCCCCE------EEEcchhHHhh----------------------cCCCC----CHHHHHHHHHHHhhcC
Confidence            3456666666667777      88887664322                      11111    6889999999998642


Q ss_pred             CCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC-----C-CCeEEEcCCcCcchHH
Q 009517          157 GRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS-----E-NDGILCPIPQYPLYSA  230 (533)
Q Consensus       157 ~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~-----~-gd~Vlv~~p~~~~~~~  230 (533)
                      .. ...+.    ..+.+..+|+.+.+..+  ...+.++++++|++|++.+++..+..     . ..+|+....+|++...
T Consensus        77 ~~-~~~~~----~~~~~~~la~~L~~~~p--~~~~~v~f~~SGsEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~  149 (428)
T PRK07986         77 HV-MFGGI----THPPAIELCRKLVAMTP--QPLECVFLADSGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTF  149 (428)
T ss_pred             Cc-ccccc----CCHHHHHHHHHHHhhCC--CCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcH
Confidence            10 01011    22344555666654332  23468999999999999999987621     2 3679999999998654


Q ss_pred             HHHHh-CCe-------------EEEEecCCCC---CC-CCCHHHHHHHHHHHHhcCCCeeEEEEeCC-CCCCcc-CCCHH
Q 009517          231 SIALH-GGT-------------LVPYYLDEAT---GW-GLETSEVKKQLEAAKAKGITVRALVVINP-GNPTGQ-VLAEE  290 (533)
Q Consensus       231 ~~~~~-g~~-------------~~~v~~~~~~---~~-~ld~~~l~~~i~~~~~~g~~~~~iil~~p-~NPtG~-~~s~~  290 (533)
                      .+... +..             +..++.....   .| .-|++++++.++..   +.++.+|+++.. +.-.|+ .++++
T Consensus       150 ~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~~---~~~iaavi~Epi~~g~gg~~~~~~~  226 (428)
T PRK07986        150 GAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARLMAAH---RHEIAAVILEPIVQGAGGMRIYHPE  226 (428)
T ss_pred             hhhcccCCchhhhhccCCCCCCCEEECCCCcccchhhHHHHHHHHHHHHHhC---CCcEEEEEEechhcCcCCcccCCHH
Confidence            33322 211             1112211000   01 11566777777642   236777777763 655675 55778


Q ss_pred             HHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCC-CeeEEEEEecCC
Q 009517          291 NQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFS  369 (533)
Q Consensus       291 ~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G-~riG~v~~~~~~  369 (533)
                      .+++|.++|++||+++|+||++.+|...|.  ...     .+..++.||     +.+|+|.++  .| +++|.+++   +
T Consensus       227 ~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~--~fa-----~~~~gv~PD-----i~t~gK~l~--gG~~p~~av~~---~  289 (428)
T PRK07986        227 WLKRVRKLCDREGILLIADEIATGFGRTGK--LFA-----CEHAGIAPD-----ILCLGKALT--GGTMTLSATLT---T  289 (428)
T ss_pred             HHHHHHHHHHHcCCEEEEeccccCCccCCC--eee-----ecccCCCCC-----EEEechhhh--CCcccCcchhc---h
Confidence            999999999999999999999999755543  111     112222577     336899994  48 69999987   8


Q ss_pred             HHHHHHHHHh------hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCce
Q 009517          370 AEVREQIYKV------ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL---EGIT  440 (533)
Q Consensus       370 ~~~~~~l~~~------~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~g~~  440 (533)
                      +++++.+...      ...+++.++++++++.+.|+.           .++ +...++.+++.+++++.|+++   +.+.
T Consensus       290 ~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~-----------i~~-~~~~~~~~~~g~~l~~~l~~l~~~~~i~  357 (428)
T PRK07986        290 REVAETISNGEAGCFMHGPTFMGNPLACAVANASLSL-----------LES-GDWQQQVAAIEAQLREELAPLRDAPMVA  357 (428)
T ss_pred             HHHHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHHH-----------HHh-CCHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence            9999888642      336788899999999888741           111 234566666777777777664   4455


Q ss_pred             EecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHH
Q 009517          441 CNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVT  518 (533)
Q Consensus       441 ~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~  518 (533)
                      -++..|.+..+ .+..+.            .... +...+.++||++.+.       | +.+|+.+.  +++++|+++++
T Consensus       358 ~vRg~Gl~~~v-e~~~~~------------~~~~-~~~~l~~~Gl~~~~~-------g-~~i~~~Ppl~it~~ei~~~~~  415 (428)
T PRK07986        358 DVRVLGAIGVV-ETTRPV------------NMAA-LQRFFVEQGVWIRPF-------G-KLIYLMPPYIILPEQLQRLTA  415 (428)
T ss_pred             eEeccceEEEE-EeCCcc------------cHHH-HHHHHHHCCcEEEec-------C-CEEEEeCCCCCCHHHHHHHHH
Confidence            56666765443 233221            1122 334556789999862       1 27999874  89999999999


Q ss_pred             HHHHHHHH
Q 009517          519 RLTDFHKN  526 (533)
Q Consensus       519 ~l~~~l~~  526 (533)
                      +|.+++++
T Consensus       416 ~l~~~l~~  423 (428)
T PRK07986        416 AVNRAVQD  423 (428)
T ss_pred             HHHHHHhh
Confidence            99998864

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=99.88  E-value=4.6e-20  Score=191.67  Aligned_cols=365  Identities=13%  Similarity=0.091  Sum_probs=230.1

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      ++.++++...++.|+++      +||+..|....                      ..+++    ++++++++.+++.+.
T Consensus        34 ~i~~a~G~~l~D~dG~~------ylD~~~g~~~~----------------------~lGh~----~p~v~~ai~~ql~~l   81 (445)
T PRK09221         34 LLVSAEGMYYTDADGRK------ILDGTAGLWCC----------------------NAGHG----RPEIVEAVARQAATL   81 (445)
T ss_pred             eEEeccccEEEeCCCCE------EEEccccHhhc----------------------cCCCC----CHHHHHHHHHHHHhc
Confidence            56778888777778777      78876554221                      11111    688999999998863


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC------C-CCeEEEcCCcCcch
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS------E-NDGILCPIPQYPLY  228 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~------~-gd~Vlv~~p~~~~~  228 (533)
                      .......+     ..+....+|+.+.+...  ...++|+++++|++|++.+++..+..      + ..+|+....+|++.
T Consensus        82 ~~~~~~~~-----~~~~~~~la~~L~~~~p--~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~  154 (445)
T PRK09221         82 DYAPAFQM-----GHPLAFELAERLAELAP--GGLDHVFFTNSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGV  154 (445)
T ss_pred             cCcccccc-----CCHHHHHHHHHHHHhCC--CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCcc
Confidence            22111111     12333445555554322  22468999999999999999987521      1 25799999999987


Q ss_pred             HHHHHHhCC-------------eEEEEecCC---CCCCCC--------CHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCc
Q 009517          229 SASIALHGG-------------TLVPYYLDE---ATGWGL--------ETSEVKKQLEAAKAKGITVRALVVINPGNPTG  284 (533)
Q Consensus       229 ~~~~~~~g~-------------~~~~v~~~~---~~~~~l--------d~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG  284 (533)
                      .......+.             .+..+|...   ...++.        ..+++++.++..  ...++.+|+++..+...|
T Consensus       155 t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~--~~~~iAavi~Epv~g~~G  232 (445)
T PRK09221        155 GFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQPEHGAELADDLERLVALH--DASTIAAVIVEPMAGSAG  232 (445)
T ss_pred             chhhhccCCChhhhhccCCCCCCCeEeCCCccccccccCCChHHHHHHHHHHHHHHHHhc--CCCcEEEEEEecccCCCC
Confidence            543322211             112222210   000111        135666666532  113678888887777778


Q ss_pred             c-CCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCC-CeeEE
Q 009517          285 Q-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG-KRGGY  362 (533)
Q Consensus       285 ~-~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G-~riG~  362 (533)
                      . .++++.+++|.++|++||+++|+||++++|...|.  ...     .+..++.||     +.+|+|.++  .| +++|.
T Consensus       233 ~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~--~~~-----~~~~gv~PD-----i~~~gK~l~--gG~~Pi~a  298 (445)
T PRK09221        233 VLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGA--AFA-----AERFGVTPD-----IITFAKGLT--NGAIPMGA  298 (445)
T ss_pred             cccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCch--hhH-----HHhcCCCCC-----EEEeccccc--cCccccee
Confidence            7 45677899999999999999999999999765553  111     122223677     568999994  36 78999


Q ss_pred             EEEecCCHHHHHHHHH--------hhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009517          363 MEVTGFSAEVREQIYK--------VASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFN  434 (533)
Q Consensus       363 v~~~~~~~~~~~~l~~--------~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  434 (533)
                      +++   ++++++.+..        ....+++.++++++++.+.|+           ..++ +.+.++.+++.+++++.|+
T Consensus       299 v~~---~~~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~-----------~i~~-~~l~~~~~~~g~~l~~~l~  363 (445)
T PRK09221        299 VIA---SDEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLD-----------IYRE-EDLFERAAELAPYFEDAVH  363 (445)
T ss_pred             eEE---cHHHHHhhccCcccccccccccCCCcCHHHHHHHHHHHH-----------HHHh-ccHHHHHHHHHHHHHHHHH
Confidence            988   8898887643        123578889999988888874           1111 2456677777888888887


Q ss_pred             cC---CCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CC
Q 009517          435 SL---EGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQ  509 (533)
Q Consensus       435 ~~---~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~  509 (533)
                      ++   +.+.-++..|.+.. +.+..+...       .......++ +.+.++||++.++       + +.+||++.  ++
T Consensus       364 ~l~~~~~v~~vrg~Gl~~~-v~~~~~~~~-------~~~~~~~~~-~~~~~~Gv~~~~~-------~-~~lr~~Ppl~~t  426 (445)
T PRK09221        364 SLKGLPHVIDIRNIGLVAG-IELAPRPGA-------PGARGYEAF-MKCFEKGLLVRYT-------G-DTIALSPPLIIE  426 (445)
T ss_pred             hhccCCCEEEEecCceEEE-EEEeccccc-------ccchHHHHH-HHHHHCCeEEeec-------C-CEEEEECCccCC
Confidence            65   33444566665432 223211000       000112333 4456789999752       1 27999974  89


Q ss_pred             cCcHHHHHHHHHHHHHHH
Q 009517          510 EDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       510 ~e~i~~~~~~l~~~l~~~  527 (533)
                      +++|++++++|+++++++
T Consensus       427 ~~eid~~~~~l~~~l~~~  444 (445)
T PRK09221        427 KAQIDELVDALGDALRAV  444 (445)
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            999999999999999764

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.88  E-value=1.4e-20  Score=194.28  Aligned_cols=353  Identities=13%  Similarity=0.086  Sum_probs=223.7

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      ++.++++...++.||++      ++|+..|....                      ..+++    ++++++++.+++.+.
T Consensus        25 ~i~~a~G~~l~D~dG~~------ylD~~~g~~~~----------------------~lGh~----~p~i~~ai~~q~~~~   72 (422)
T PRK05630         25 LVTSTDGVFLTLEDGST------VIDAMSSWWSA----------------------AHGHG----HPRLKAAAHKQIDTM   72 (422)
T ss_pred             eEEeceeeEEEECCCCE------EEEcchhHHHh----------------------cCCCC----CHHHHHHHHHHHHhC
Confidence            56667777777777777      78876554322                      11111    689999999999874


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC------CC-CeEEEcCCcCcch
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS------EN-DGILCPIPQYPLY  228 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~------~g-d~Vlv~~p~~~~~  228 (533)
                      .. ....+..    .+....+|+.+.+..+  ...++++++++|++|++.+++..+..      ++ .+|+....+|++.
T Consensus        73 ~~-~~~~~~~----~~~~~~lae~L~~~~p--~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~  145 (422)
T PRK05630         73 SH-VMFGGLT----HEPAIKLTRKLLNLTD--NGLDHVFYSDSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGD  145 (422)
T ss_pred             CC-cccCCcC----CHHHHHHHHHHHhhCC--CCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCc
Confidence            22 0111111    2233445555544322  22468999999999999999987521      23 5799999999986


Q ss_pred             HHHHHHh-CC-------------eEEEEecCCCCCCCCCH-------HHHHHHHHHHHhcCCCeeEEEEeCC-CCCCcc-
Q 009517          229 SASIALH-GG-------------TLVPYYLDEATGWGLET-------SEVKKQLEAAKAKGITVRALVVINP-GNPTGQ-  285 (533)
Q Consensus       229 ~~~~~~~-g~-------------~~~~v~~~~~~~~~ld~-------~~l~~~i~~~~~~g~~~~~iil~~p-~NPtG~-  285 (533)
                      ...+... +.             ....+|....  ...+.       +.+++.+..      ++.+||++.. +.-.|+ 
T Consensus       146 t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~------~iAAvi~EPi~qg~gG~~  217 (422)
T PRK05630        146 TFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPPV--RGSSPQEISEYLRSLELLIDE------TVAAIIIEPIVQGAGGMR  217 (422)
T ss_pred             cHHHhccCCCcccccccccccCCCCeEcCCCcc--cCCChHHHHHHHHHHHHHHhh------ceEEEEEechhcCcCCcc
Confidence            5443322 21             1122222110  11122       334444433      7888988873 777787 


Q ss_pred             CCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCC-CeeEEEE
Q 009517          286 VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYME  364 (533)
Q Consensus       286 ~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G-~riG~v~  364 (533)
                      .++.+.+++|.++|++||+++|+||+++++...|.  ..     ..+..++.||     +.+|+|.++  .| .++|+++
T Consensus       218 ~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~--~~-----a~~~~gv~PD-----i~t~gK~l~--gG~~p~~av~  283 (422)
T PRK05630        218 FHDVALIEGVRTLCDKHDILLIADEIATGFGRTGE--LF-----ATLAAGVTPD-----IMCVGKALT--GGFMSFAATL  283 (422)
T ss_pred             cCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCch--hh-----HHHhcCCCCC-----eeeeechhh--cCccccceee
Confidence            56677899999999999999999999999765543  21     1222233688     448899984  37 5899999


Q ss_pred             EecCCHHHHHHHHH-------hhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Q 009517          365 VTGFSAEVREQIYK-------VASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNS--  435 (533)
Q Consensus       365 ~~~~~~~~~~~l~~-------~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--  435 (533)
                      +   ++++++.+..       ....|++.++++++++.++|+.           .++ +...++.+++.+++.+.|++  
T Consensus       284 ~---~~~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~-----------l~~-~~~~~~~~~~g~~l~~~L~~l~  348 (422)
T PRK05630        284 C---TDKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEI-----------IET-GMWRKQVKRIEAELIAGLSPLA  348 (422)
T ss_pred             c---cHHHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHH-----------HHh-CcHHHHHHHHHHHHHHHHHHhh
Confidence            8   8999888753       1236788999999999888742           111 12344555555566665554  


Q ss_pred             -CCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCc
Q 009517          436 -LEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDK  512 (533)
Q Consensus       436 -~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~  512 (533)
                       .|.+.-++..|.+..+ .+..+.            ....+. ..+.++||++.+.       + +.+||.+.  +++++
T Consensus       349 ~~~~v~~vRg~Gl~~~i-e~~~~~------------~~~~~~-~~~~~~Gl~~~~~-------g-~~l~~~PpL~it~~~  406 (422)
T PRK05630        349 HLPGVADVRVLGAIGVV-EMEQPV------------DMEEAT-QAAVDHGVWLRPF-------G-RLVYVMPPYITTSEQ  406 (422)
T ss_pred             cCCCeeeeeccccEEEE-EECCcc------------cHHHHH-HHHHHCCeEEEec-------C-CEEEEECCccCCHHH
Confidence             3555666777765443 232110            112333 4566789999762       2 38899985  89999


Q ss_pred             HHHHHHHHHHHHHH
Q 009517          513 IPAIVTRLTDFHKN  526 (533)
Q Consensus       513 i~~~~~~l~~~l~~  526 (533)
                      |++++++|+++++.
T Consensus       407 i~~~~~~l~~al~~  420 (422)
T PRK05630        407 IAQICAALAAAVKA  420 (422)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999998864

>PRK07036 hypothetical protein; Provisional

Probab=99.88  E-value=3.8e-20  Score=193.27  Aligned_cols=372  Identities=14%  Similarity=0.091  Sum_probs=233.2

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      ++.++++...++.||++      +||+..|....                      ..+++    ++++++++.+++.+.
T Consensus        36 ~i~~a~G~~l~D~dG~~------ylD~~~g~~~~----------------------~lGh~----~p~v~~Ai~~q~~~~   83 (466)
T PRK07036         36 VIVEAEGIYVTDADGRR------YLDGIGGMWCV----------------------NVGYG----REEMADAIADQARRL   83 (466)
T ss_pred             eEEeCceeEEEECCCCE------EEECcccHHhh----------------------cCCCC----CHHHHHHHHHHHHhC
Confidence            45566666666677777      88876664221                      11111    688999999998863


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC------CC-CeEEEcCCcCcch
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS------EN-DGILCPIPQYPLY  228 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~------~g-d~Vlv~~p~~~~~  228 (533)
                      ..  ...+..  -..+.+..+|+.+.....  ...+.|+++++|++|++.+++..+..      ++ .+|+....+|++.
T Consensus        84 ~~--~~~~~~--~~~~~~~~lae~L~~~~p--~~~~~v~f~~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~  157 (466)
T PRK07036         84 PY--YTPFGD--MTNAPAAELAAKLAELAP--GDLNHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGS  157 (466)
T ss_pred             cc--cccccc--cCCHHHHHHHHHHHHhCC--CCcCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCc
Confidence            21  111110  123445556666654322  22468999999999999999987411      22 6799999999997


Q ss_pred             HHHHHHhCCe-------------EEEEecCCC--CCCCCC--------HHHHHHHHHHHHhcCCCeeEEEEeCCCCCCcc
Q 009517          229 SASIALHGGT-------------LVPYYLDEA--TGWGLE--------TSEVKKQLEAAKAKGITVRALVVINPGNPTGQ  285 (533)
Q Consensus       229 ~~~~~~~g~~-------------~~~v~~~~~--~~~~ld--------~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~  285 (533)
                      ...+......             +..++....  ..++..        .+.+++.+...  .+.++.+||++..+...|.
T Consensus       158 t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~iAavi~EPv~g~gG~  235 (466)
T PRK07036        158 TYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMSEAAFCDFLVDEFEDKILSL--GADNIAAFIAEPILGSGGV  235 (466)
T ss_pred             cHhhhcccCCCcccccccCCCCCcEEecCCcccccccCCChHHHHHHHHHHHHHHHHHc--CCCceEEEEEeCCcCCCCC
Confidence            6444332111             222221110  011221        23344545421  1236888888877766777


Q ss_pred             -CCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCC-CeeEEE
Q 009517          286 -VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYM  363 (533)
Q Consensus       286 -~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G-~riG~v  363 (533)
                       .++++.+++|.++|++||+++|+||++++|...|.  ...+    ....++.||     +.+|+|.++  .| +++|.+
T Consensus       236 ~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~--~~~~----~~~~gv~PD-----ivt~gK~l~--gG~~Pi~av  302 (466)
T PRK07036        236 IVPPPGYHARMREICRRYDILYISDEVVTGFGRLGH--FFAS----EAVFGIQPD-----IITFAKGLT--SGYQPLGAV  302 (466)
T ss_pred             ccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCch--hhhh----hhhcCCCCC-----EEEEccccc--cCccccEEE
Confidence             56778899999999999999999999999765552  1111    111223688     667899994  48 599999


Q ss_pred             EEecCCHHHHHHHHHh--------hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009517          364 EVTGFSAEVREQIYKV--------ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNS  435 (533)
Q Consensus       364 ~~~~~~~~~~~~l~~~--------~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  435 (533)
                      ++   .+++++.+...        ...|++.++++++++.+.|+.           .+ .+.+.+..+++.++|.+.|++
T Consensus       303 ~~---~~~i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le~-----------i~-~~~l~~~~~~~g~~l~~~L~~  367 (466)
T PRK07036        303 II---SERLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEI-----------ME-REGLCEHVREVGPYFEERLAS  367 (466)
T ss_pred             EE---cHHHHHHHhcccCcCcccccCCCCCCCHHHHHHHHHHHHH-----------HH-hCCHHHHHHHHHHHHHHHHHH
Confidence            98   99999887531        225788999999999988841           11 134556666666677777655


Q ss_pred             C---CCceEecCCceeEEecccCCCHHHHHHHHhcCCCC----hHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec-
Q 009517          436 L---EGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVP----DAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-  507 (533)
Q Consensus       436 ~---~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-  507 (533)
                      +   |.+..++..|.|+.+ .+..+...     +.....    ...+. ..+.++||++.|.   +     +.+||++. 
T Consensus       368 l~~~~~v~~vrG~Gl~~~v-e~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~Gvl~~~~---~-----~~~~l~Ppl  432 (466)
T PRK07036        368 LRELPLVGDVRGDHLMACV-ECVADKGS-----KALLPEDIAIGQRID-RHCQERGLLVRPL---E-----HLCVLSPPL  432 (466)
T ss_pred             hccCCCEEEEEeeceEEEE-EEccCccc-----cCCCCchhHHHHHHH-HHHHHCCcEEeec---C-----CEEEEeCCC
Confidence            4   445557777766543 33211100     000000    12333 4456789999862   1     26789975 


Q ss_pred             -CCcCcHHHHHHHHHHHHHHHHHH
Q 009517          508 -PQEDKIPAIVTRLTDFHKNFMDK  530 (533)
Q Consensus       508 -~~~e~i~~~~~~l~~~l~~~~~~  530 (533)
                       +++++|+++++++.++++++.++
T Consensus       433 ~it~~~id~~~~~l~~al~~~~~~  456 (466)
T PRK07036        433 IITRAQIDEIVAILRAAIEETADE  456 (466)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHH
Confidence             79999999999999999887554

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.88  E-value=1.3e-20  Score=194.75  Aligned_cols=358  Identities=13%  Similarity=0.060  Sum_probs=226.6

Q ss_pred             HHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCC
Q 009517           77 VSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIP  156 (533)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~  156 (533)
                      +.++++...++.||++      ++|+..|....                      ..+++    ++++++++.+++.+..
T Consensus        30 i~~a~G~~l~D~dG~~------ylD~~~g~~~~----------------------~lGh~----~p~v~~ai~~q~~~~~   77 (429)
T PRK06173         30 VERADGVMITLKDGRR------LIDGMSSWWAA----------------------LHGYN----HPRLNAAATNQLAKMS   77 (429)
T ss_pred             EEeceeeEEEcCCCCE------EEEccchHHhc----------------------cCCCC----CHHHHHHHHHHHHhcC
Confidence            4556666666667777      77776553221                      11111    5889999999998743


Q ss_pred             CCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC------CC-CeEEEcCCcCcchH
Q 009517          157 GRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS------EN-DGILCPIPQYPLYS  229 (533)
Q Consensus       157 ~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~------~g-d~Vlv~~p~~~~~~  229 (533)
                      .. ...+..    .+....+|+.+.....  ...+.|+++++|++|++.+++..+..      +| .+|+....+|++..
T Consensus        78 ~~-~~~~~~----~~~~~~lae~L~~~~p--~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t  150 (429)
T PRK06173         78 HI-MFGGFT----HEPAVELAQKLLEILP--PSLNKIFFADSGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDT  150 (429)
T ss_pred             Cc-cccccC----CHHHHHHHHHHHhhCC--CCcCEEEEeCCchHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcc
Confidence            20 111111    2233344554443322  23468999999999999999987621      33 57999999999864


Q ss_pred             HHHHHh-CC-------------eEEEEecCCCCCCC-----CCHHHHHHHHHHHHhcCCCeeEEEEeCC-CCCCccC-CC
Q 009517          230 ASIALH-GG-------------TLVPYYLDEATGWG-----LETSEVKKQLEAAKAKGITVRALVVINP-GNPTGQV-LA  288 (533)
Q Consensus       230 ~~~~~~-g~-------------~~~~v~~~~~~~~~-----ld~~~l~~~i~~~~~~g~~~~~iil~~p-~NPtG~~-~s  288 (533)
                      ...... |.             .+..+|.... .+.     -+++.+++.+...   +.++.+||++.. +.-.|.. ++
T Consensus       151 ~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~l~~l~~~i~~~---~~~iAAvi~EPi~qg~gG~~~~~  226 (429)
T PRK06173        151 WHAMSVCDPVTGMHGLFNHSLPVQYFLPQPSI-KFGEEWNDEAIEPLQDLLEQK---GDEIAALILEPVVQGAGGMYFYS  226 (429)
T ss_pred             hhhhccCCCchhhhhcccccCCCCeEeCCCCc-ccchhHHHHHHHHHHHHHHhC---CCcEEEEEEcchhhccCCcccCC
Confidence            322211 11             0112221100 011     1356677777532   337888888874 7777875 78


Q ss_pred             HHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCC-CeeEEEEEec
Q 009517          289 EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTG  367 (533)
Q Consensus       289 ~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G-~riG~v~~~~  367 (533)
                      ++.+++|.++|++||+++|+||++.+|..+|.  ...     .+..++.||     +.+|+|.++  .| ++++.+++  
T Consensus       227 ~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~--~~a-----~~~~gv~PD-----iv~~gK~l~--gG~~p~~a~~~--  290 (429)
T PRK06173        227 PTYLVKARELCDQYGVLLIFDEIATGFGRTGK--LFA-----LEHAGVVPD-----IMCIGKALT--GGYLTLSATIT--  290 (429)
T ss_pred             HHHHHHHHHHHHHcCCeEEecchhcCCCcCCc--chH-----HHhcCCCCC-----EEEeehhhh--CCccccceEEe--
Confidence            88899999999999999999999998655443  111     122223577     335999994  48 58999988  


Q ss_pred             CCHHHHHHHHH------hhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CC
Q 009517          368 FSAEVREQIYK------VASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL---EG  438 (533)
Q Consensus       368 ~~~~~~~~l~~------~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~g  438 (533)
                       .+++++.+..      ....|++.++++++++.+.|+           ..++ +...++.+++.++|++.|+++   +.
T Consensus       291 -~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~-----------~i~~-~~~~~~~~~~g~~l~~~L~~~~~~~~  357 (429)
T PRK06173        291 -TEAIAQTICSGEAKCFMHGPTFMANPLACAIAAESIR-----------LLLE-SPWQQNIQRIEAQLKQELAPAAEFDS  357 (429)
T ss_pred             -cHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHH-----------HHHh-CCHHHHHHHHHHHHHHHHHHhhcCCC
Confidence             8999887753      123567789999999988874           2221 234666777777788877754   33


Q ss_pred             ceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHH
Q 009517          439 ITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAI  516 (533)
Q Consensus       439 ~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~  516 (533)
                      +.-++..|.+..+ .+..+.            .... +.+.|.++||++.+.       + +.+||.+.  +++++|+++
T Consensus       358 v~~vRg~Gl~~~i-el~~~~------------~~~~-i~~~l~e~Gi~v~~~-------g-~~l~~~Ppl~it~~ei~~~  415 (429)
T PRK06173        358 VAEVRVLGAIGVV-EMKEPV------------NMAT-LQPRFVEHGIWVRPF-------G-KLVYIMPPFIISPDELSQL  415 (429)
T ss_pred             eeeeeccceEEEE-EeCCcc------------cHHH-HHHHHHHCCeEEEec-------C-CEEEEeCCccCCHHHHHHH
Confidence            4345566655432 232111            1122 335566789999862       1 28999995  899999999


Q ss_pred             HHHHHHHHHHHH
Q 009517          517 VTRLTDFHKNFM  528 (533)
Q Consensus       517 ~~~l~~~l~~~~  528 (533)
                      +++|+++++++.
T Consensus       416 ~~~l~~~l~~~~  427 (429)
T PRK06173        416 TSGLLRVLKQEY  427 (429)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998754

>PLN02509 cystathionine beta-lyase

Probab=99.87  E-value=1.4e-19  Score=187.25  Aligned_cols=225  Identities=16%  Similarity=0.188  Sum_probs=159.0

Q ss_pred             ccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHH----HHHh
Q 009517          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS----IALH  235 (533)
Q Consensus       160 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~----~~~~  235 (533)
                      .+.|... |.+ .++++++++.+..|    .+++++++++++++..++. ++ ++||+|+++.|.|..+...    +...
T Consensus       124 ~~~Y~r~-gnp-t~~aLE~~lA~leg----~e~ai~~~SG~aAi~~il~-ll-~~GD~VI~~~~~y~~t~~ll~~~l~~~  195 (464)
T PLN02509        124 PYDYTRS-GNP-TRDALESLLAKLDK----ADRAFCFTSGMAALSAVTH-LI-KNGEEIVAGDDVYGGSDRLLSQVVPRS  195 (464)
T ss_pred             CCccCCC-CCH-HHHHHHHHHHHHhC----CCEEEEeCcHHHHHHHHHH-Hh-CCCCEEEEcCCchhhHHHHHHHHHHHC
Confidence            4567765 554 57777777776544    5677888888999977664 55 7999999999999987643    4467


Q ss_pred             CCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccc
Q 009517          236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN  315 (533)
Q Consensus       236 g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~  315 (533)
                      |++++.++.       .|++++++++++      ++++|++++|+||||.+.   ++++|+++|++||+++|+|++|...
T Consensus       196 G~~v~~vd~-------~d~e~l~~ai~~------~TklV~lesPsNPtG~i~---Dl~~I~~lAk~~g~~lIVD~A~a~~  259 (464)
T PLN02509        196 GVVVKRVNT-------TNLDEVAAAIGP------QTKLVWLESPTNPRQQIS---DIRKIAEMAHAQGALVLVDNSIMSP  259 (464)
T ss_pred             CeEEEEeCC-------CCHHHHHHhCCc------CCeEEEEECCCCCCCCHH---HHHHHHHHHHHcCCEEEEECCcccc
Confidence            888887753       368999998876      799999999999999974   4999999999999999999998643


Q ss_pred             cccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHH
Q 009517          316 VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILA  394 (533)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~  394 (533)
                      .. +. +      +  +.   ..|   +++.|++|.+.|..+.-.|++++  .++.+...+...+. .....+++.++++
T Consensus       260 ~~-~~-p------l--~~---gaD---ivv~S~tK~l~G~gdv~gG~v~~--~~~~l~~~~~~~~~~~g~~l~p~~A~l~  321 (464)
T PLN02509        260 VL-SR-P------L--EL---GAD---IVMHSATKFIAGHSDVMAGVLAV--KGEKLAKEVYFLQNSEGSGLAPFDCWLC  321 (464)
T ss_pred             cc-CC-h------h--hc---CCc---EEEecCcccccCCCccceeEEEe--ccHHHHHHHHHHHHhcCCCcCHHHHHHH
Confidence            32 11 1      1  11   234   88999999985433344677765  24555555554443 2233455555444


Q ss_pred             HHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Q 009517          395 SLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGIT  440 (533)
Q Consensus       395 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~  440 (533)
                      ...|              +.+..+.++..++++.+.+.|++.|.++
T Consensus       322 lr~L--------------~tL~~R~~r~~~nA~~la~~L~~~p~V~  353 (464)
T PLN02509        322 LRGI--------------KTMALRIEKQQENARKIAMYLSSHPRVK  353 (464)
T ss_pred             Hhhh--------------hhHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            4443              3455666777788888999998876653

>PLN02955 8-amino-7-oxononanoate synthase

Probab=99.87  E-value=2.4e-19  Score=183.30  Aligned_cols=320  Identities=14%  Similarity=0.116  Sum_probs=207.7

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCccc----HHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhc-----
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGI----KGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI-----  211 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~----~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-----  211 (533)
                      .+++++++.+.+.+... +...=.-..|.    .+|.+++|++++        .+..++.++|..|...++.++.     
T Consensus       118 ~p~v~~a~~~ai~~yG~-g~~gSrl~~G~~~~h~~LE~~LA~f~g--------~e~all~sSGy~AN~~~i~aL~~~~~~  188 (476)
T PLN02955        118 HPTISNAAANAAKEYGM-GPKGSALICGYTTYHRLLESSLADLKK--------KEDCLVCPTGFAANMAAMVAIGSVASL  188 (476)
T ss_pred             CHHHHHHHHHHHHHcCC-CCCCcCccccChHHHHHHHHHHHHHHC--------CCcEEEECChHHHHHHHHHHHhhcccc
Confidence            68899999888876532 11111123343    678888888864        5677888888888888887762     


Q ss_pred             --------cCCCCeEEEcCCcCcchHHHHHHh----CCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCC
Q 009517          212 --------RSENDGILCPIPQYPLYSASIALH----GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP  279 (533)
Q Consensus       212 --------~~~gd~Vlv~~p~~~~~~~~~~~~----g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p  279 (533)
                              ...++.|+...-.|......++..    +++++.++.       -|+++|++.++...   .+.++|++...
T Consensus       189 ~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~~a~~~~f~H-------ND~~~Le~~L~~~~---~~~~~Vv~EgV  258 (476)
T PLN02955        189 LAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRH-------CDMYHLNSLLSSCK---MKRKVVVTDSL  258 (476)
T ss_pred             ccccccccCCCCcEEEEeccchHHHHHHHHhccccCCceEEEeCC-------CCHHHHHHHHHhCC---CCceEEEEeCC
Confidence                    134566777777787888887776    466666653       38999999997642   23455665566


Q ss_pred             CCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCe
Q 009517          280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKR  359 (533)
Q Consensus       280 ~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~r  359 (533)
                      -+++|.+.+   +++|.++|++||+++|+||+|..++++....  .   ....+ +..++ ..|+++||||++    |.+
T Consensus       259 ~SmdGdiap---L~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~--G---~~e~~-g~~~d-i~ii~~TLsKA~----G~~  324 (476)
T PLN02955        259 FSMDGDFAP---MEELSQLRKKYGFLLVIDDAHGTFVCGENGG--G---VAEEF-NCEAD-VDLCVGTLSKAA----GCH  324 (476)
T ss_pred             CCCCCCcCC---HHHHHHHHHHcCcEEEEcccccCceecCCCC--c---HHHHh-CCCCC-CcEEEEeCccch----hcc
Confidence            899999999   8999999999999999999999887753211  1   11111 11223 458899999987    456


Q ss_pred             eEEEEEecCCHHHHHHHHHhhh--ccccCChH-HHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 009517          360 GGYMEVTGFSAEVREQIYKVAS--VNLCSNIS-GQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL  436 (533)
Q Consensus       360 iG~v~~~~~~~~~~~~l~~~~~--~~~~~~~~-~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  436 (533)
                      .||+++   ++++++.+.....  .++++.++ ...++.+.+.           ........++++.++.+++++.   .
T Consensus       325 GGfi~g---s~~~~~~l~~~~~~~ifStalpp~~aaa~laal~-----------l~~~~~~~r~~L~~n~~~fr~~---~  387 (476)
T PLN02955        325 GGFIAC---SKKWKQLIQSRGRSFIFSTAIPVPMAAAAYAAVV-----------VARKEKWRRKAIWERVKEFKAL---S  387 (476)
T ss_pred             Cceeec---HHHHHHHHHHhCCCCeecccccHHHHHHHHHHHH-----------HHhcCHHHHHHHHHHHHHHHHh---c
Confidence            699887   8889988876543  22233332 3333333332           1111123556677777777763   2


Q ss_pred             CCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHH
Q 009517          437 EGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIP  514 (533)
Q Consensus       437 ~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~  514 (533)
                       |+.+  + ..++.+ -+..+.             ....+.+.|.++||++.+-.....+.+...+||++.  +++++|+
T Consensus       388 -G~~~--~-sPI~pI-~ig~~~-------------~a~~~~~~L~~~Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~edId  449 (476)
T PLN02955        388 -GVDI--S-SPIISL-VVGNQE-------------KALKASRYLLKSGFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVK  449 (476)
T ss_pred             -CCCC--C-CCEEEE-EeCCHH-------------HHHHHHHHHHHCCCEEEEECCCCCCCCCceEEEeeCCCCCHHHHH
Confidence             5543  1 222211 122221             122234556678999998666555566668999995  8999999


Q ss_pred             HHHHHHHHHHHHHH
Q 009517          515 AIVTRLTDFHKNFM  528 (533)
Q Consensus       515 ~~~~~l~~~l~~~~  528 (533)
                      +++++|.++.+...
T Consensus       450 ~lv~~L~~~~~~~~  463 (476)
T PLN02955        450 KLITALSSCLDFDN  463 (476)
T ss_pred             HHHHHHHHHHhhhc
Confidence            99999998876543

>PRK05967 cystathionine beta-lyase; Provisional

Probab=99.87  E-value=1.8e-19  Score=182.75  Aligned_cols=223  Identities=15%  Similarity=0.189  Sum_probs=157.9

Q ss_pred             cccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHH----HHHHhC
Q 009517          161 GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA----SIALHG  236 (533)
Q Consensus       161 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~----~~~~~g  236 (533)
                      +.|+  .+..+.++++++.+....+    .+..++++++++|+..++..++ ++||+|+++.|.|+++..    .++..|
T Consensus        56 y~Ys--R~gnPt~~~Le~~la~le~----~~~~v~~sSG~aAi~~~l~all-~~GD~Vlv~~~~Y~~~~~l~~~~l~~~G  128 (395)
T PRK05967         56 YTYG--TRGTPTTDALCKAIDALEG----SAGTILVPSGLAAVTVPFLGFL-SPGDHALIVDSVYYPTRHFCDTMLKRLG  128 (395)
T ss_pred             CccC--CCCChHHHHHHHHHHHHhC----CCCEEEECcHHHHHHHHHHHhc-CCCCEEEEccCCcHHHHHHHHHHHHhcC
Confidence            3454  3345555556655554332    2334555668899999999998 899999999999999764    456789


Q ss_pred             CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEcccccccc
Q 009517          237 GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENV  316 (533)
Q Consensus       237 ~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~  316 (533)
                      +++..++..       +.+.+++++++      ++|+|++++|+||++.+   .++++|+++|+++|+++|+|++|....
T Consensus       129 i~v~~vd~~-------~~e~l~~al~~------~TklV~lesPsNP~l~v---~dl~~I~~la~~~g~~vvVD~t~a~p~  192 (395)
T PRK05967        129 VEVEYYDPE-------IGAGIAKLMRP------NTKVVHTEAPGSNTFEM---QDIPAIAEAAHRHGAIVMMDNTWATPL  192 (395)
T ss_pred             eEEEEeCCC-------CHHHHHHhcCc------CceEEEEECCCCCCCcH---HHHHHHHHHHHHhCCEEEEECCccCce
Confidence            988887532       35778888876      79999999999998655   459999999999999999999997643


Q ss_pred             ccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHH
Q 009517          317 YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILAS  395 (533)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~  395 (533)
                      +-  .+      +  ++   ..|   |++.|.+|.++|-.+.-.|+++.   ++++.+.+..... ...+.++..+..+.
T Consensus       193 ~~--~p------l--~~---GaD---ivv~S~tKy~~Gh~d~~~G~v~~---~~~~~~~l~~~~~~~G~~~~p~da~l~~  253 (395)
T PRK05967        193 YF--RP------L--DF---GVD---ISIHAATKYPSGHSDILLGTVSA---NEKCWPQLLEAHGTLGLCAGPDDTYQIL  253 (395)
T ss_pred             ec--Ch------h--Hc---CCC---EEEEecccccCCCCCeeEEEEEc---CHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            31  11      1  11   234   88999999987666688897765   6776666654433 44556666665555


Q ss_pred             HHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 009517          396 LVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGI  439 (533)
Q Consensus       396 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~  439 (533)
                      .-|+              .+..+.++..++...+.+.|++.|.+
T Consensus       254 rgl~--------------Tl~lR~~~~~~na~~lA~~L~~hp~v  283 (395)
T PRK05967        254 RGLR--------------TMGIRLEHHRKSALEIARWLEGRPDV  283 (395)
T ss_pred             cCcc--------------cHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            4443              23444555666777788888887654

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=99.87  E-value=1.5e-19  Score=183.90  Aligned_cols=289  Identities=15%  Similarity=0.182  Sum_probs=193.7

Q ss_pred             cccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCC
Q 009517          167 QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDE  246 (533)
Q Consensus       167 ~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~  246 (533)
                      ....+++++++++++        .+++++++|+++|+..++..+...+||+|+++.++|..+...+...|.+++.+++++
T Consensus        18 ~~~~~~~~~la~~~~--------~~~~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~   89 (352)
T cd00616          18 PKVREFEKAFAEYLG--------VKYAVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATANAILLLGATPVFVDIDP   89 (352)
T ss_pred             HHHHHHHHHHHHHhC--------CCeEEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHHHcCCeEEEEecCC
Confidence            347899999999974        356888899999999999988326899999999999999999999999999999875


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccH
Q 009517          247 ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSF  326 (533)
Q Consensus       247 ~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~  326 (533)
                       .++.+|++.+++.+++      ++++|++++   ++|.+.+   +++|.++|+++|+++|+|++++.........    
T Consensus        90 -~~~~~d~~~l~~~i~~------~~~~v~~~~---~~G~~~~---~~~i~~l~~~~~i~li~D~a~~~g~~~~~~~----  152 (352)
T cd00616          90 -DTYNIDPELIEAAITP------RTKAIIPVH---LYGNPAD---MDAIMAIAKRHGLPVIEDAAQALGATYKGRK----  152 (352)
T ss_pred             -CcCCcCHHHHHHhcCc------CCeEEEEEC---CCCCcCC---HHHHHHHHHHcCCeEEEECCCCCCCeECCEE----
Confidence             3678999999998865      789998764   6898877   8888999999999999999997422111110    


Q ss_pred             HHHHhhcCCCCCCceEEEEecCC--ccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhcc----------------ccCCh
Q 009517          327 KKVSRSMGYGEKDISLVSFQSVS--KGYYGECGKRGGYMEVTGFSAEVREQIYKVASVN----------------LCSNI  388 (533)
Q Consensus       327 ~~~~~~~~~~~~~~~vi~i~S~S--K~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~~----------------~~~~~  388 (533)
                        + ..    ..+   +.+.||+  |.+ +  +.+.|+++.  .++++.+.+..+....                ...+.
T Consensus       153 --~-~~----~~d---~~~~S~~~~K~~-~--~~~gg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (352)
T cd00616         153 --V-GT----FGD---AGAFSFHPTKNL-T--TGEGGAVVT--NDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSE  217 (352)
T ss_pred             --c-cc----Ccc---eeEEcCCCCCCC-c--ccCceEEEE--CCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCH
Confidence              0 00    112   4567766  877 3  446788876  3567877776543211                11222


Q ss_pred             HHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCc------eeEEecccCCCHHHHH
Q 009517          389 SGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEG------AMYLFPRIQLPEKAIK  462 (533)
Q Consensus       389 ~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~g------g~~~~~~~~~~~~~~~  462 (533)
                      +..+++...              .+.++.+.++.+++.+++++.|.+++|+++..+..      .++.+ .++...+   
T Consensus       218 ~~aa~~~~~--------------l~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~---  279 (352)
T cd00616         218 IQAAIGLAQ--------------LEKLDEIIARRREIAERYKELLADLPGIRLPDVPPGVKHSYHLYVI-RLDPEAG---  279 (352)
T ss_pred             HHHHHHHHH--------------HHhhHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEE-EECCcCC---
Confidence            222222222              13345566667788889999999988888764322      22222 1221000   


Q ss_pred             HHHhcCCCChHHHHHHHHHccceEEEcCCCCCCC---------------C-----CCceEEEEec--CCcCcHHHHHHHH
Q 009517          463 AAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQV---------------P-----GTWHFRCTIL--PQEDKIPAIVTRL  520 (533)
Q Consensus       463 ~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~---------------~-----g~~~iRis~~--~~~e~i~~~~~~l  520 (533)
                             .+...+ .+.|.++||.+.........               +     ..+.|||++.  .++++|+.++++|
T Consensus       280 -------~~~~~v-~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l  351 (352)
T cd00616         280 -------ESRDEL-IEALKEAGIETRVHYPPLHHQPPYKKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEAL  351 (352)
T ss_pred             -------CCHHHH-HHHHHHCCCCeeeecCccccCHhhhhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHh
Confidence                   122333 35567789966532111000               0     0248999996  8999999888876


Q ss_pred             H
Q 009517          521 T  521 (533)
Q Consensus       521 ~  521 (533)
                      +
T Consensus       352 ~  352 (352)
T cd00616         352 R  352 (352)
T ss_pred             C
Confidence            3

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>PLN02651 cysteine desulfurase

Probab=99.87  E-value=8.1e-20  Score=186.56  Aligned_cols=310  Identities=15%  Similarity=0.169  Sum_probs=202.9

Q ss_pred             CCHHHHHHHHHHHhcCCCCCc---cccCC--CcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhc---
Q 009517          140 FSADSIERAWQILDQIPGRAT---GAYSH--SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI---  211 (533)
Q Consensus       140 ~p~~v~~~~~~~~~~~~~~~~---~~Y~~--~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~---  211 (533)
                      +|+.+++++.+.+........   +.+..  ..-+.++|+.+++++    |  .++++|++|+|+++++..++..+.   
T Consensus        11 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----g--~~~~~v~~t~~~t~a~~~~l~~~~~~~   84 (364)
T PLN02651         11 IDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALI----G--ADPKEIIFTSGATESNNLAIKGVMHFY   84 (364)
T ss_pred             CCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHh----C--CCCCeEEEeCCHHHHHHHHHHHHHHhc
Confidence            378999998887754221000   00111  111345566666665    4  557899999999999888876652   


Q ss_pred             cCCCCeEEEcCCcCcchHHH---HHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCC
Q 009517          212 RSENDGILCPIPQYPLYSAS---IALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLA  288 (533)
Q Consensus       212 ~~~gd~Vlv~~p~~~~~~~~---~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s  288 (533)
                      ..+||+|+++...|+.+...   +...|.+++.+++++  ++.+|+++++++|++      +++++++++++||||.+.+
T Consensus        85 ~~~g~~vl~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~------~t~lv~v~~~~n~tG~~~~  156 (364)
T PLN02651         85 KDKKKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVKS--DGLVDLDELAAAIRP------DTALVSVMAVNNEIGVIQP  156 (364)
T ss_pred             cCCCCEEEEcccccHHHHHHHHHHHhcCCEEEEEccCC--CCcCCHHHHHHhcCC------CcEEEEEECCCCCceeccc
Confidence            15789999999777765443   345688999998864  457899999999976      7999999999999999998


Q ss_pred             HHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecC
Q 009517          289 EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGF  368 (533)
Q Consensus       289 ~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~  368 (533)
                         +++|.++|+++|+++++|.+++.    |..+ ..+    .++   ..|   +++.|..|.+ |++|  +|++.+   
T Consensus       157 ---l~~I~~~~~~~g~~~~vD~a~~~----g~~~-~~~----~~~---~~D---~~~~s~hK~~-gp~G--~g~l~v---  212 (364)
T PLN02651        157 ---VEEIGELCREKKVLFHTDAAQAV----GKIP-VDV----DDL---GVD---LMSISGHKIY-GPKG--VGALYV---  212 (364)
T ss_pred             ---HHHHHHHHHHcCCEEEEEcchhh----CCcc-cCc----ccC---CCC---EEEechhhhC-CCCc--eEEEEE---
Confidence               88999999999999999999975    2111 111    111   234   7788899954 5444  677776   


Q ss_pred             CHHHHHHHHHhh--------hccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCc
Q 009517          369 SAEVREQIYKVA--------SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNS-LEGI  439 (533)
Q Consensus       369 ~~~~~~~l~~~~--------~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~  439 (533)
                      +++....+....        ....+++..+..++.++|+          .+.+..+.+.++.++.++++.+.|++ ++|+
T Consensus       213 ~~~~~~~l~p~~~g~~~~~~~~~GT~~~~~~~~l~~al~----------~~~~~~~~i~~~~~~l~~~l~~~l~~~~~~~  282 (364)
T PLN02651        213 RRRPRVRLEPLMSGGGQERGRRSGTENTPLVVGLGAACE----------LAMKEMDYDEKHMKALRERLLNGLRAKLGGV  282 (364)
T ss_pred             cCCCCCCCCccccCCCccCCccCCCccHHHHHHHHHHHH----------HHHHhHHHHHHHHHHHHHHHHHHHHhhCCCE
Confidence            554443332221        0223456666666666663          12234566778888889999999986 5788


Q ss_pred             eEecCC------ceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCC----------------
Q 009517          440 TCNKAE------GAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVP----------------  497 (533)
Q Consensus       440 ~~~~~~------gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~----------------  497 (533)
                      .++.|.      .+...+ .++  .          . +.+.+. ..|.+  |.+..|+.+....                
T Consensus       283 ~i~~~~~~~~~~~~i~~~-~~~--~----------~-~~~~~~-~~L~~--i~v~~g~~c~~~~~~~~~~~~~~g~~~~~  345 (364)
T PLN02651        283 RVNGPRDPEKRYPGTLNL-SFA--Y----------V-EGESLL-MGLKE--VAVSSGSACTSASLEPSYVLRALGVPEEM  345 (364)
T ss_pred             EEECCCCcccCcCCEEEE-EeC--C----------C-CHHHHH-HHhCC--EEEEchhhcCCCCCCcCHHHHHcCCChHH
Confidence            887652      223332 122  1          1 123333 44544  9999888664220                


Q ss_pred             CCceEEEEec--CCcCcHH
Q 009517          498 GTWHFRCTIL--PQEDKIP  514 (533)
Q Consensus       498 g~~~iRis~~--~~~e~i~  514 (533)
                      ..+.+|+|++  +|++||+
T Consensus       346 ~~~~vR~S~~~~~t~~did  364 (364)
T PLN02651        346 AHGSLRLGVGRFTTEEEVD  364 (364)
T ss_pred             hCceEEEEcCCCCCHHHcC
Confidence            1358999997  6777653

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=99.87  E-value=4.6e-19  Score=181.22  Aligned_cols=317  Identities=17%  Similarity=0.134  Sum_probs=188.1

Q ss_pred             CHHHHHHHHHHHhcCC------CCCccccC----CCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHh
Q 009517          141 SADSIERAWQILDQIP------GRATGAYS----HSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL  210 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~------~~~~~~Y~----~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l  210 (533)
                      ++.+.+++.+++.+..      +.+..+..    ...-+.++++.+|++++      . ++.+++++|. .++..++..+
T Consensus        20 ~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~------~-~~~l~~~sG~-~a~~~~~~~~   91 (370)
T PRK05937         20 SDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHG------A-PEAFIVPSGY-MANLGLCAHL   91 (370)
T ss_pred             CHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhC------C-CeEEEECChH-HHHHHHHHHh
Confidence            4666777666665431      10122222    22235677888888774      2 2235555555 5555555555


Q ss_pred             ccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHH
Q 009517          211 IRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE  290 (533)
Q Consensus       211 ~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~  290 (533)
                      . .+||.|++..-.|......++......+.++       ..|++++++.++.....++++.+|++++++|+||.+.+  
T Consensus        92 ~-~~~d~ii~d~~~H~sv~~~~~~~~~~~~~~~-------~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~p--  161 (370)
T PRK05937         92 S-SVTDYVLWDEQVHISVVYSLSVISGWHQSFR-------HNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAP--  161 (370)
T ss_pred             C-CCCCEEEEEhhhhHHHHHHHHHcCCceEEec-------CCCHHHHHHHHHhhhccCCCcEEEEEecCCCCCCCccC--
Confidence            4 5677777766666666666666543333332       35899999999864322234567778899999999999  


Q ss_pred             HHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCH
Q 009517          291 NQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSA  370 (533)
Q Consensus       291 ~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~  370 (533)
                       +++|.++|+++|+++++||+|....+....  .   .+...+.  .++. .+.+.||||.+ |+.|.+   ++.   .+
T Consensus       162 -l~eI~~l~~~~~~~livDea~~~G~~g~~g--~---g~~~~~~--~~~~-~~~~~tlsK~~-g~~G~~---vl~---~~  225 (370)
T PRK05937        162 -LEQIIALSKKYHAHLIVDEAHAMGIFGDDG--K---GFCHSLG--YENF-YAVLVTYSKAL-GSMGAA---LLS---SS  225 (370)
T ss_pred             -HHHHHHHHHHcCCEEEEECCccccccCCCC--C---chHHhhC--CCCC-cEEEEechhhh-hcCceE---EEc---CH
Confidence             889999999999999999999854332111  1   1111111  1221 35688999998 666633   333   56


Q ss_pred             HHHHHHHHhh-h--ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCceEecCCc
Q 009517          371 EVREQIYKVA-S--VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL-EGITCNKAEG  446 (533)
Q Consensus       371 ~~~~~l~~~~-~--~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~g~~~~~~~g  446 (533)
                      ++...+.... .  ...+.++.+..++.++++-          ..+..+..++++++.++++.+.|... ++.  .    
T Consensus       226 ~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~----------l~~~~~~~~~~l~~l~~~l~~~l~~~~~~~--~----  289 (370)
T PRK05937        226 EVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDF----------LSQEGELARKQLFRLKEYFAQKFSSAAPGC--V----  289 (370)
T ss_pred             HHHHHHHHhCCCCeecCCCCHHHHHHHHHHHHH----------HHhCcHHHHHHHHHHHHHHHHhcCCCCCCC--E----
Confidence            6555544221 1  2233455655555455421          11112334566777777887777543 111  0    


Q ss_pred             eeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHH
Q 009517          447 AMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       447 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l  524 (533)
                       ..++  ++..             .... +.+.|.++||.+....  .  +..+.+|+|+.  .++++|+++++.|++++
T Consensus       290 -~~i~--~~~~-------------~~~~-~~~~L~~~gi~v~~~~--~--~~~~~iRis~~~~~t~edid~l~~~L~~~~  348 (370)
T PRK05937        290 -QPIF--LPGI-------------SEQE-LYSKLVETGIRVGVVC--F--PTGPFLRVNLHAFNTEDEVDILVSVLATYL  348 (370)
T ss_pred             -EEEE--eCCh-------------hHHH-HHHHHHHCCeeEEeeC--C--CCCCEEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence             1122  2210             1222 3456777899887421  1  22238999996  89999999999999998


Q ss_pred             HHHH
Q 009517          525 KNFM  528 (533)
Q Consensus       525 ~~~~  528 (533)
                      +++.
T Consensus       349 ~~~~  352 (370)
T PRK05937        349 EKYQ  352 (370)
T ss_pred             HHhC
Confidence            8764

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=99.87  E-value=1.2e-19  Score=185.19  Aligned_cols=284  Identities=13%  Similarity=0.144  Sum_probs=190.1

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHH----HHHhCCeEEEEec
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS----IALHGGTLVPYYL  244 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~----~~~~g~~~~~v~~  244 (533)
                      ..+|++.+++++    |    .++++++++++.++..++. ++ ++||+|+++.+.|......    +...|++++.++.
T Consensus        49 ~~~le~~la~l~----g----~~~~l~~~sG~~al~~~l~-ll-~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~  118 (378)
T TIGR01329        49 RTALESLLAKLD----K----ADRAFAFSSGMAALDVITR-LL-NNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDT  118 (378)
T ss_pred             HHHHHHHHHHHh----C----CCcEEEECCHHHHHHHHHH-Hh-CCCCEEEEcCCCchHHHHHHHHHHHHcCcEEEEeCC
Confidence            345666666654    3    2567777888889998876 56 7999999999999876553    4557999998875


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcc
Q 009517          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (533)
Q Consensus       245 ~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~  324 (533)
                      .       |++++++++++      ++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|.....     ..
T Consensus       119 ~-------d~~~le~~i~~------~tklv~le~psnptg~v~d---l~~I~~la~~~g~~vivD~a~~~~~~-----~~  177 (378)
T TIGR01329       119 T-------DLDKVKAALGP------KTKLVLLESPTNPLQKIVD---IRKISEMAHAQNALVVVDNTMMSPLL-----CN  177 (378)
T ss_pred             C-------CHHHHHHhcCc------CceEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCccccc-----CC
Confidence            3       78999999976      8999999999999999998   99999999999999999999853211     11


Q ss_pred             cHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCC
Q 009517          325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKV  403 (533)
Q Consensus       325 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~  403 (533)
                      ++     ++   ..|   +++.|++|.++|..|.+.|++++  .++++.+.+..... ...+.++..+..+...|+    
T Consensus       178 ~l-----~~---g~D---i~v~S~tK~l~G~~~~~~G~v~~--~~~~~~~~~~~~~~~~G~~~~~~~a~l~~~~l~----  240 (378)
T TIGR01329       178 PL-----EL---GAD---IVYHSATKFLAGHSDVMAGVLAV--KGEEIAKKVYFLQNSTGSGLAPFDCWLLLRGIK----  240 (378)
T ss_pred             hh-----hc---CCc---EEEEecceeccCCccceeEEEEe--CcHHHHHHHHHHHHhcCCcCCHHHHHHHHccCC----
Confidence            11     11   134   88999999986655688999987  35666677766654 344555665544443332    


Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEe------------------cCCceeEEecccCCCHHHHHHHH
Q 009517          404 GDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCN------------------KAEGAMYLFPRIQLPEKAIKAAE  465 (533)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~------------------~~~gg~~~~~~~~~~~~~~~~~~  465 (533)
                                .+..+.++-.++...+.+.|++.|.+..+                  ...|+++.|. +.   +      
T Consensus       241 ----------tl~~R~e~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~-~~---~------  300 (378)
T TIGR01329       241 ----------TLAIRIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFE-TG---S------  300 (378)
T ss_pred             ----------CHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEE-EC---C------
Confidence                      23334445555666666677665443211                  1234555542 22   1      


Q ss_pred             hcCCCChHHHHHHHHHccceEEEcCCCCCC------------C------C--CCceEEEEecCCcCcHHHHHHHHHHHHH
Q 009517          466 AEKTVPDAFYCRRLLNATGIVLVPGSGFGQ------------V------P--GTWHFRCTILPQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       466 ~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~------------~------~--g~~~iRis~~~~~e~i~~~~~~l~~~l~  525 (533)
                         ......|+ ..|+..++.+.-|.....            .      .  ..+.||||+++  |+.+.+++.|+++++
T Consensus       301 ---~~~~~~~~-~~L~~~~i~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl--E~~~dl~~dl~~al~  374 (378)
T TIGR01329       301 ---VALSKRLV-EATKLFSITVSFGSVNSLISMPCFMSHASIPAEVREERGLPEDLVRLSVGI--EDVDDLISDLDIAFV  374 (378)
T ss_pred             ---HHHHHHHH-HhCcCcccccCCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHHH
Confidence               01123344 344667777777755420            0      0  13489999996  457888888888887


Q ss_pred             H
Q 009517          526 N  526 (533)
Q Consensus       526 ~  526 (533)
                      +
T Consensus       375 ~  375 (378)
T TIGR01329       375 T  375 (378)
T ss_pred             h
Confidence            4

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK12403 putative aminotransferase; Provisional

Probab=99.86  E-value=2.6e-19  Score=186.87  Aligned_cols=371  Identities=13%  Similarity=0.098  Sum_probs=225.4

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      ++.++++...++.||++      +||+..|....                    .+...      ++++++++.+++.+.
T Consensus        39 ~i~~a~G~~l~D~dG~~------ylD~~~g~~~~--------------------~lGh~------hp~v~~A~~~q~~~~   86 (460)
T PRK12403         39 VMVRGEGLHLWDNDGKR------YLDGMSGLWCT--------------------NLGYG------RKDLAAAAARQMEQL   86 (460)
T ss_pred             eEEeceeeEEEeCCCCE------EEECchhHHhh--------------------cCCCC------CHHHHHHHHHHHHhC
Confidence            56778888888888887      77765553221                    00111      689999999999874


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc------CCC-CeEEEcCCcCcch
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR------SEN-DGILCPIPQYPLY  228 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~------~~g-d~Vlv~~p~~~~~  228 (533)
                      ..  ...+  ..+..+....+++.+....+  ...+.++++++|++|++.+++.++.      .++ ..|+....+|++.
T Consensus        87 ~~--~~~~--~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~SGseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~  160 (460)
T PRK12403         87 PY--YNMF--FHTTHPAVIELSELLFSLLP--GHYSHAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGS  160 (460)
T ss_pred             CC--eecc--cccCCHHHHHHHHHHHHhCC--CCcCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcc
Confidence            21  1111  11223444445555544322  2236899999999999999998851      122 3455666788886


Q ss_pred             HHHHHHh-CCe-----------EEEEecCC--CCCCCC--------CHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCcc-
Q 009517          229 SASIALH-GGT-----------LVPYYLDE--ATGWGL--------ETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ-  285 (533)
Q Consensus       229 ~~~~~~~-g~~-----------~~~v~~~~--~~~~~l--------d~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~-  285 (533)
                      ....... |..           +..+|...  ...+.+        +.+.+++.+.+.  ...++.+||++..+.-.|. 
T Consensus       161 t~~~~s~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~~~~~--~~~~iaavI~Epv~g~gG~~  238 (460)
T PRK12403        161 TLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAEFGRRAALQLEEKILEL--GAENVAGFVAEPFQGAGGMI  238 (460)
T ss_pred             cHhhhhcCCCccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHHh--CCCceEEEEEccccCCCCCc
Confidence            4433222 211           12222110  000111        124455555432  1125778887766666686 


Q ss_pred             CCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCC-eeEEEE
Q 009517          286 VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGK-RGGYME  364 (533)
Q Consensus       286 ~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~-riG~v~  364 (533)
                      ..+++.+++|.++|++||+++|+||++++|...|.  ...     .+..++.||     +.+|+|.++  .|+ ++|.++
T Consensus       239 ~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~--~~a-----~e~~gv~PD-----iv~~gK~lg--gG~~Piga~v  304 (460)
T PRK12403        239 FPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGE--WFA-----HEHFGFEPD-----TLSIAKGLT--SGYVPMGGLV  304 (460)
T ss_pred             cCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCch--hhh-----hhhcCCCCC-----eEEEccccc--ccccceEEEE
Confidence            45778899999999999999999999999766553  111     122233677     345899995  485 999998


Q ss_pred             EecCCHHHHHHHHH----h-hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHH-HHHHHHHHHHhc---
Q 009517          365 VTGFSAEVREQIYK----V-ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLA-RRAKTLEDAFNS---  435 (533)
Q Consensus       365 ~~~~~~~~~~~l~~----~-~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~L~~---  435 (533)
                      +   .+++++.+..    . ...|++.++++++++.+.|+.           .++ +.+.++.+ ++.+++++.|++   
T Consensus       305 ~---~~~i~~~~~~~~~~~~~~~T~~gnPl~~Aaala~L~~-----------i~~-~~l~~~~~~~~g~~l~~~L~~l~~  369 (460)
T PRK12403        305 L---SKRIAEALVEQGGVFAHGLTYSGHPVAAAVAIANLKA-----------LRD-EGVVTRVKDDTGPYLQRCLREVFG  369 (460)
T ss_pred             E---CHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHH-----------HHh-ccHHHHHHHHHHHHHHHHHHHHHh
Confidence            8   8888887753    1 236788999999999988841           111 22444553 555566666554   


Q ss_pred             -CCCceEecCCceeEEecccCCCHHHHHHHHhcCCCC---hHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CC
Q 009517          436 -LEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVP---DAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQ  509 (533)
Q Consensus       436 -~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~  509 (533)
                       .+.+.-++..|.|+.+ .+..+...     +.....   ....+...+.++||++.+.      .+  .+|+++.  ++
T Consensus       370 ~~~~i~~vrG~Gl~~gi-e~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~Gll~~~~------~~--~~~l~Ppl~it  435 (460)
T PRK12403        370 DHPLVGEVQGAGLVAAL-QFAEDKAT-----RKRFANENDLAWRCRTIGFEEGVIIRST------LG--RMIMAPALVAG  435 (460)
T ss_pred             cCCCEEeEeecceEEEE-EEccCccc-----cccccchhHHHHHHHHHHHhCCEEEEec------CC--EEEEECCCCCC
Confidence             3445667777776543 23211000     000000   0111223445689999852      11  5789986  69


Q ss_pred             cCcHHHHHHHHHHHHHHHHH
Q 009517          510 EDKIPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       510 ~e~i~~~~~~l~~~l~~~~~  529 (533)
                      +++|++++++++++++++.+
T Consensus       436 ~~eid~~~~~l~~al~~~~~  455 (460)
T PRK12403        436 RAEIDELVDKTRIAVDRTAR  455 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998854

>PRK06148 hypothetical protein; Provisional

Probab=99.86  E-value=5.6e-20  Score=207.83  Aligned_cols=371  Identities=13%  Similarity=0.049  Sum_probs=233.4

Q ss_pred             chHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhc
Q 009517           75 EIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQ  154 (533)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~  154 (533)
                      ..+.++++...++.||++      ++|+..|....                      ...      ++.+++++.+++.+
T Consensus       608 ~~i~~g~G~~l~D~dG~~------ylD~~~g~~~l----------------------GH~------hp~v~~Ai~~q~~~  653 (1013)
T PRK06148        608 IKFVRGWGVWLIDNRGRA------YLDCFNNVCHV----------------------GHA------HPRVVAAAARQAAR  653 (1013)
T ss_pred             ceEEEeeecEEEECCCCE------EEEcccChhhc----------------------CCC------CHHHHHHHHHHHhh
Confidence            355666666666667776      66665443111                      111      68899999999986


Q ss_pred             CCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCC-CeEEEcCCcCcchHHHHH
Q 009517          155 IPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-DGILCPIPQYPLYSASIA  233 (533)
Q Consensus       155 ~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vlv~~p~~~~~~~~~~  233 (533)
                      ...  ...|.     .+....+|+.+.+...  ...+.++++++|+||++.+++..+...| .+|+....+|++......
T Consensus       654 l~~--~~~~~-----~~~~~~lAe~L~~~~p--~~~~~v~f~nSGsEA~e~AlklAr~~tGr~~ii~~~~~YHG~t~~a~  724 (1013)
T PRK06148        654 LNT--NTRYL-----HDAIVAYAERLTATLP--DGLTVAFFVNSGSEANSLALRLARAHTGQRDAIVLDHAYHGTTTELI  724 (1013)
T ss_pred             cCC--cCCcC-----CHHHHHHHHHHHHhCC--CCcCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEEcCCccCCCcchh
Confidence            421  22232     2334445555554322  2236899999999999999999864344 679999999998764332


Q ss_pred             HhCC-------------eEEEEecC--CCCCCCC-C-------HHHHHHHHHHHHhcCCCeeEEEEeCCCCCCcc-CCCH
Q 009517          234 LHGG-------------TLVPYYLD--EATGWGL-E-------TSEVKKQLEAAKAKGITVRALVVINPGNPTGQ-VLAE  289 (533)
Q Consensus       234 ~~g~-------------~~~~v~~~--~~~~~~l-d-------~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~-~~s~  289 (533)
                      ....             .+..++..  ....|.. +       .+.+++.++.....+.++.+||++..+.-.|. .+++
T Consensus       725 s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~  804 (1013)
T PRK06148        725 DLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPE  804 (1013)
T ss_pred             hcCchhhcccCCCCCCCCceEcCCCCccccCCCCChhhhHHHHHHHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCH
Confidence            2110             01111110  0001221 1       14566666432222346888888866554554 6688


Q ss_pred             HHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCC
Q 009517          290 ENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFS  369 (533)
Q Consensus       290 ~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~  369 (533)
                      +.+++|.++|++||+++|+||++++|...|. .+..+     +..++.||     +.+++|.++  .|+++|.+++   .
T Consensus       805 ~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~-~~~a~-----e~~gv~PD-----ivt~gK~lg--gG~Plgav~~---~  868 (1013)
T PRK06148        805 GYLREVYAMVRAAGGVCIADEVQVGFGRVGS-HWWAF-----ETQGVVPD-----IVTMGKPIG--NGHPMGAVVT---T  868 (1013)
T ss_pred             HHHHHHHHHHHHhCCEEEEEecccCCCCCCC-cchhh-----hhcCCCcc-----eeeeccccc--CCcceEEEEE---c
Confidence            8899999999999999999999999866553 12222     11223688     678899995  4999999998   8


Q ss_pred             HHHHHHHHHh--hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCceEec
Q 009517          370 AEVREQIYKV--ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL----EGITCNK  443 (533)
Q Consensus       370 ~~~~~~l~~~--~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~~  443 (533)
                      +++++.+...  ...|++.++++++++.+.|+           ..+ -+.+.+..+++.++|++.|+++    |.+.-++
T Consensus       869 ~ei~~~~~~g~~~~~Tf~gnpla~aaa~a~L~-----------~i~-~e~l~~~~~~~G~~l~~~L~~l~~~~~~i~~Vr  936 (1013)
T PRK06148        869 REIADSFDNGMEYFNTFGGNPVSCAIGLAVLD-----------IIE-DEDLQRNALEIGNYLLAGLRELQDRFDIIGDVR  936 (1013)
T ss_pred             HHHHhhccCCCccccCCCCCHHHHHHHHHHHH-----------HHh-hccHHHHHHHHHHHHHHHHHHHHHhCCCceEEe
Confidence            9999887542  23778999999999998884           121 1345566677777777777664    4455677


Q ss_pred             CCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHH
Q 009517          444 AEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLT  521 (533)
Q Consensus       444 ~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~  521 (533)
                      ..|.|+.+ .+..+...     ..........+...+.++||++.+...+     .+.+||.+.  +++++|++++++|+
T Consensus       937 G~Gl~~gv-el~~~~~~-----~~~~~~~~~~i~~~~~~~Gvl~~~~g~~-----~~vlr~~Ppl~it~~~id~~l~~l~ 1005 (1013)
T PRK06148        937 GMGLFLGI-ELVTDRKT-----KAPATAIARYVKNGARERGILIGTEGPH-----DNVLKIRPPLIFSRADADHLLEVLD 1005 (1013)
T ss_pred             eeceEEEE-EecCCccc-----cCccHHHHHHHHHHHHhCCeEEeccCCC-----CCEEEEeCCccCCHHHHHHHHHHHH
Confidence            77766543 23211000     0000001122334455689999874222     237888885  89999999999999


Q ss_pred             HHHHHH
Q 009517          522 DFHKNF  527 (533)
Q Consensus       522 ~~l~~~  527 (533)
                      ++++++
T Consensus      1006 ~~l~~~ 1011 (1013)
T PRK06148       1006 DVLAAA 1011 (1013)
T ss_pred             HHHHHH
Confidence            999865

>PRK07671 cystathionine beta-lyase; Provisional

Probab=99.86  E-value=4.3e-19  Score=180.91  Aligned_cols=213  Identities=16%  Similarity=0.188  Sum_probs=150.5

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcc-hHH---HHHHhCCeEEEEec
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPL-YSA---SIALHGGTLVPYYL  244 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~-~~~---~~~~~g~~~~~v~~  244 (533)
                      ..+|++.+|++.+      . ...+++++ ++.++..++. ++ .+||+|+++.|+|.+ |..   .+...|++++.++.
T Consensus        52 ~~~Le~~lA~l~g------~-~~~~~~~s-G~aai~~~~~-~l-~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~v~~  121 (377)
T PRK07671         52 RAALEELIAVLEG------G-HAGFAFGS-GMAAITAVMM-LF-SSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDT  121 (377)
T ss_pred             HHHHHHHHHHHhC------C-CceEEeCC-HHHHHHHHHH-Hh-CCCCEEEECCCccchHHHHHHHHHhcCCeEEEEECC
Confidence            6788888888864      2 23355444 5678877664 55 799999999999984 432   33446888888863


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcc
Q 009517          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (533)
Q Consensus       245 ~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~  324 (533)
                             .|++++++++++      ++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|....+.  .+  
T Consensus       122 -------~d~~~l~~ai~~------~tklV~le~P~NPtg~~~d---l~~I~~la~~~g~~lvvD~a~~~~~~~--~p--  181 (377)
T PRK07671        122 -------SNLEEVEEAIRP------NTKAIYVETPTNPLLKITD---IKKISTIAKEKGLLTIVDNTFMTPYWQ--SP--  181 (377)
T ss_pred             -------CCHHHHHHhcCC------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCCccccC--Ch--
Confidence                   379999999976      7999999999999999977   889999999999999999999753331  11  


Q ss_pred             cHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCC
Q 009517          325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKV  403 (533)
Q Consensus       325 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~  403 (533)
                       + .    +   ..|   |++.|+||.++|..+.-.|++++  .++++++.+...+. .....++.....+..-++    
T Consensus       182 -~-~----~---g~D---ivv~S~sK~l~G~~~~~~G~~v~--~~~~l~~~~~~~~~~~g~~~~~~~a~l~~~~l~----  243 (377)
T PRK07671        182 -I-S----L---GAD---IVLHSATKYLGGHSDVVAGLVVV--NSPELAEDLHFVQNSTGGILGPQDSWLLLRGLK----  243 (377)
T ss_pred             -h-h----h---CCe---EEEecCcccccCCccceeEEEEe--CcHHHHHHHHHHHHhhcCCCCHHHHHHHHcCcC----
Confidence             1 1    1   123   88999999995433345676665  36778888876665 334445555554443332    


Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 009517          404 GDESYESYCAERDGILSSLARRAKTLEDAFNSLEGI  439 (533)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~  439 (533)
                                .+....++..++...+.+.|++.|++
T Consensus       244 ----------tl~~R~~~~~~na~~la~~L~~~~~v  269 (377)
T PRK07671        244 ----------TLGIRMEEHETNSRAIAEFLNNHPAV  269 (377)
T ss_pred             ----------hHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence                      23445566677888899999887664

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=99.86  E-value=9.2e-19  Score=173.31  Aligned_cols=303  Identities=16%  Similarity=0.182  Sum_probs=220.7

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcc--hHHHHHHhCCeEEEEecCC
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPL--YSASIALHGGTLVPYYLDE  246 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~--~~~~~~~~g~~~~~v~~~~  246 (533)
                      ..++.+.+.+.+...++.. +.+-++++.+++.+++.++..++ .|||+|++...+..+  +.++++.+|++++.+....
T Consensus        36 F~~~~~~~~~~L~~v~~t~-~~~~~ll~gsGt~amEAav~sl~-~pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~w  113 (383)
T COG0075          36 FVGIMKEVLEKLRKVFGTE-NGDVVLLSGSGTLAMEAAVASLV-EPGDKVLVVVNGKFGERFAEIAERYGAEVVVLEVEW  113 (383)
T ss_pred             HHHHHHHHHHHHHHHhcCC-CCcEEEEcCCcHHHHHHHHHhcc-CCCCeEEEEeCChHHHHHHHHHHHhCCceEEEeCCC
Confidence            4566666666666666633 23456777889999999999999 899999999888776  6789999999999998875


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccH
Q 009517          247 ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSF  326 (533)
Q Consensus       247 ~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~  326 (533)
                      ..  .+|+++++++|++    +++.++|.++|.-.+||+..+   +++|+++|++||.++|+|.+-+   +++. +. . 
T Consensus       114 g~--~v~p~~v~~~L~~----~~~~~~V~~vH~ETSTGvlnp---l~~I~~~~k~~g~l~iVDaVsS---~Gg~-~~-~-  178 (383)
T COG0075         114 GE--AVDPEEVEEALDK----DPDIKAVAVVHNETSTGVLNP---LKEIAKAAKEHGALLIVDAVSS---LGGE-PL-K-  178 (383)
T ss_pred             CC--CCCHHHHHHHHhc----CCCccEEEEEeccCcccccCc---HHHHHHHHHHcCCEEEEEeccc---CCCc-cc-c-
Confidence            43  7899999999995    347889999999999999998   9999999999999999999987   3332 21 1 


Q ss_pred             HHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHh---------------h----hccccCC
Q 009517          327 KKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV---------------A----SVNLCSN  387 (533)
Q Consensus       327 ~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~---------------~----~~~~~~~  387 (533)
                         .      +..+-.+++.+-.|+++++||+  |.+.+   +++..+.+...               .    ...++++
T Consensus       179 ---v------d~wgiDv~itgSQK~l~~PPGl--a~v~~---S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~Tpp  244 (383)
T COG0075         179 ---V------DEWGIDVAITGSQKALGAPPGL--AFVAV---SERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPP  244 (383)
T ss_pred             ---h------hhcCccEEEecCchhccCCCcc--ceeEE---CHHHHHHHhcCCCCceeecHHHHHHHHhhcCCCCCCCC
Confidence               1      2223347788889999888886  55555   66666555421               1    1235566


Q ss_pred             hHHHHHHHHHcCCCCCCChhHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEe--cccCCCHHHHHHH
Q 009517          388 ISGQILASLVMSPPKVGDESYESYCA-ERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLF--PRIQLPEKAIKAA  464 (533)
Q Consensus       388 ~~~q~a~~~~L~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~--~~~~~~~~~~~~~  464 (533)
                      ....+++..+|+.          ..+ -++...++++++.+.+++.++++ |++... +.....+  .-+..|.+     
T Consensus       245 v~~i~aL~~al~~----------i~~EGle~r~~RH~~~~~a~r~~~~al-Gl~~~~-~~~~~s~tvta~~~P~g-----  307 (383)
T COG0075         245 VNLIYALREALDL----------ILEEGLEARIARHRRLAEALRAGLEAL-GLELFA-DPERRSPTVTAIKVPEG-----  307 (383)
T ss_pred             HHHHHHHHHHHHH----------HHHhhHHHHHHHHHHHHHHHHHHHHHc-CCcccc-CcccCCCceEEEECCCC-----
Confidence            6666777666642          223 36788889999999999999999 887765 2222221  11334442     


Q ss_pred             HhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEe-c-CCcCcHHHHHHHHHHHHHHH
Q 009517          465 EAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTI-L-PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       465 ~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~-~-~~~e~i~~~~~~l~~~l~~~  527 (533)
                          .++.... ..+++++|+.+.+|..-.   ...+|||+. + .+.+++..++.+|..+++++
T Consensus       308 ----~~~~~~~-~~~~~~~g~~i~gg~~~l---~gkifRIGhMG~~~~~dv~~~l~ale~~L~~~  364 (383)
T COG0075         308 ----VDDKKVR-RALLKEYGVEIAGGQGPL---KGKIFRIGHMGNVRPEDVLAALAALEAALREL  364 (383)
T ss_pred             ----CCcHHHH-HHHHHhCCEEeccccccc---CccEEEEecCccCCHHHHHHHHHHHHHHHHHc
Confidence                2322333 378888899999876532   223999999 3 78889999999999999875

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.86  E-value=4.9e-19  Score=182.91  Aligned_cols=155  Identities=19%  Similarity=0.231  Sum_probs=125.1

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcch----HHHHHHhCCeEEEEec
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLY----SASIALHGGTLVPYYL  244 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~----~~~~~~~g~~~~~v~~  244 (533)
                      ...|.+.+|++.+        .+..++++|+++|+..++..++ ++||+|+++.+.|+..    ...+...|++++.++.
T Consensus        66 ~~~Le~~lA~leg--------~~~al~~~sG~~Ai~~al~~ll-~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~  136 (431)
T PRK08248         66 TDVFEKRIAALEG--------GIGALAVSSGQAAITYSILNIA-SAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVDP  136 (431)
T ss_pred             HHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHHh-CCCCEEEEccCchhhHHHHHHHHHHhCCEEEEEECC
Confidence            5678888888864        4578899999999999998887 7999999999988753    3445668999988875


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcc
Q 009517          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (533)
Q Consensus       245 ~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~  324 (533)
                             .|++.+++++++      ++++|++++|+||||.+++   +++|+++|+++|+++|+|++|..    +. ...
T Consensus       137 -------~d~e~l~~ai~~------~tklV~l~sp~NPtG~v~d---i~~I~~la~~~gi~vIvD~t~a~----~~-~~~  195 (431)
T PRK08248        137 -------SDPENFEAAITD------KTKALFAETIGNPKGDVLD---IEAVAAIAHEHGIPLIVDNTFAS----PY-LLR  195 (431)
T ss_pred             -------CCHHHHHHhcCC------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEeCCCCc----cc-cCC
Confidence                   278999999876      7999999999999999999   78999999999999999999863    11 111


Q ss_pred             cHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEE
Q 009517          325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV  365 (533)
Q Consensus       325 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~  365 (533)
                      ++     ++   ..|   +++.|++|.+ |.+|.++|++++
T Consensus       196 pl-----~~---gaD---ivv~S~tK~l-gg~g~~~Gg~v~  224 (431)
T PRK08248        196 PI-----EH---GAD---IVVHSATKFI-GGHGTSIGGVIV  224 (431)
T ss_pred             hh-----Hc---CCC---EEEEcCcccc-CCCCCceEEEEE
Confidence            11     11   234   7889999999 668999999877

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=99.86  E-value=2.4e-19  Score=188.56  Aligned_cols=333  Identities=13%  Similarity=0.110  Sum_probs=209.3

Q ss_pred             CHHHHHHHHHHHhcCCCCCcccc---CCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHH--HHHhccCCC
Q 009517          141 SADSIERAWQILDQIPGRATGAY---SHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMM--MQLLIRSEN  215 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y---~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~--~~~l~~~~g  215 (533)
                      |+.+++++.+.... .  ..+.|   ...+|..+++.++++++.+.+|.+  ...+..++|+.+.+..+  ++.+..++|
T Consensus        83 ~p~i~~~~~~~~~~-~--~~tpYq~e~~sqG~lel~~~~~~~la~l~G~~--~~~l~~~~GA~a~~~~l~~~r~~~~~~G  157 (481)
T PRK04366         83 NPKINEKVARLPGF-A--ELHPLQPEETVQGALELMYELQEWLKEITGMD--AVTLQPAAGAHGELTGLLMIRAYHEARG  157 (481)
T ss_pred             CHHHHHHHHhCcch-h--cCCCCCChhhhhHHHHHHHHHHHHHHHHhCCC--ceEEEeCcHHHHHHHHHHHHHHHhhccC
Confidence            67788887765211 1  35678   457899999999999999998853  34555566666555533  332222567


Q ss_pred             C----eEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHH
Q 009517          216 D----GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEEN  291 (533)
Q Consensus       216 d----~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~  291 (533)
                      |    +|+++.|.|+.|...+...|++++.++++.  ++.+|+++|++++++      ++++|++++|+ |||++  .++
T Consensus       158 d~~~~~Vlv~~~~hp~~~~~~~~~G~~vv~v~~~~--~~~~D~e~L~~~i~~------~t~~V~v~~Pn-~tG~~--~~d  226 (481)
T PRK04366        158 DTKRTEVIVPDSAHGTNPASAAMAGFKVVEIPSNE--DGLVDLEALKAAVGE------DTAALMLTNPN-TLGLF--ERN  226 (481)
T ss_pred             cCCCCEEEEcCCccHhHHHHHHHcCCEEEEeecCC--CCCcCHHHHHhhccc------CCeEEEEeCCC-Ccccc--chH
Confidence            6    999999999999999999999999999853  568999999999976      79999999998 99965  346


Q ss_pred             HHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCC---CCeeEEEEEecC
Q 009517          292 QRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGEC---GKRGGYMEVTGF  368 (533)
Q Consensus       292 l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~---G~riG~v~~~~~  368 (533)
                      +++|+++|+++|+++++|.++..-.. +..   +.    .++   .-|   +++.+.+|.|++..   |-.+|++.+   
T Consensus       227 l~eI~~~a~~~gal~iVD~a~~~~~~-g~~---~~----~~~---GaD---~~~~~~hK~l~~P~g~Ggp~~G~l~~---  289 (481)
T PRK04366        227 ILEIAEIVHEAGGLLYYDGANLNAIL-GKA---RP----GDM---GFD---VVHLNLHKTFSTPHGGGGPGSGPVGV---  289 (481)
T ss_pred             HHHHHHHHHHcCCEEEEEecChhhhc-ccC---Cc----ccc---CCC---EEEEechhhcCCCCCCCCCCeeeeee---
Confidence            99999999999999999999853111 110   11    111   234   77889999984221   345778776   


Q ss_pred             CHHHHHHHHHh------h-------------h-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 009517          369 SAEVREQIYKV------A-------------S-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKT  428 (533)
Q Consensus       369 ~~~~~~~l~~~------~-------------~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (533)
                      .+++...+...      .             . ..+.++.+...++...+..         .-.+-++++.++..++.++
T Consensus       290 ~~~~~~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~---------~G~~Gl~~~a~~~~~~a~~  360 (481)
T PRK04366        290 KEELAPFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRS---------LGAEGLREVSEDAVLNANY  360 (481)
T ss_pred             hhhhHhhCCCCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
Confidence            66665554200      0             0 0011122222222222210         0112244555666777888


Q ss_pred             HHHHHhcCCCceEecCCceeEEec--ccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEe
Q 009517          429 LEDAFNSLEGITCNKAEGAMYLFP--RIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTI  506 (533)
Q Consensus       429 l~~~L~~~~g~~~~~~~gg~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~  506 (533)
                      +++.|+++..+.+..+...-+++-  .+..+          +. +...+ .+.|.++||.+. +..|. ....+.+|+++
T Consensus       361 l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~-~~~~v-~~~L~~~Gi~~~-~~~~p-~~~~~~l~is~  426 (481)
T PRK04366        361 LKARLKDIYDLPYDRPCMHEFVLSGKKLKET----------GV-RTLDI-AKRLLDYGFHPP-TIYFP-LIVPEALMIEP  426 (481)
T ss_pred             HHHHhHhhCcccCCCCeeEEEEEECcccccc----------CC-CHHHH-HHHHHHCCccCC-ccccc-cccCCeEEEcc
Confidence            999998752332211111112221  01110          11 12333 355667898755 22221 11133899999


Q ss_pred             c--CCcCcHHHHHHHHHHHHHHHHH
Q 009517          507 L--PQEDKIPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       507 ~--~~~e~i~~~~~~l~~~l~~~~~  529 (533)
                      .  .++++|+++++.|+++.++..+
T Consensus       427 ~e~~t~edid~l~~~l~~i~~~~~~  451 (481)
T PRK04366        427 TETESKETLDAFIAAMKQIAEEAKE  451 (481)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            6  7889999999999999887654

>PRK05939 hypothetical protein; Provisional

Probab=99.86  E-value=5e-19  Score=181.21  Aligned_cols=154  Identities=16%  Similarity=0.169  Sum_probs=122.4

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHH---HHHHhCCeEEEEecC
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA---SIALHGGTLVPYYLD  245 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~---~~~~~g~~~~~v~~~  245 (533)
                      ..+|.++++++.+        .+..+++++++.|+..++..++ ++||+|+++++.|+.+..   .+...|++++.++..
T Consensus        49 ~~~lE~~la~leg--------~~~~v~~ssG~~Ai~~~l~all-~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~~v~~v~~~  119 (397)
T PRK05939         49 TAALEAKITKMEG--------GVGTVCFATGMAAIAAVFLTLL-RAGDHLVSSQFLFGNTNSLFGTLRGLGVEVTMVDAT  119 (397)
T ss_pred             HHHHHHHHHHHhC--------CCeEEEeCCHHHHHHHHHHHHc-CCCCEEEECCCccccHHHHHHHHHhcCCEEEEECCC
Confidence            3488888888864        2345666667899999999888 899999999999987543   456679999888752


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccc-cccCCCCcc
Q 009517          246 EATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN-VYVPEKKFH  324 (533)
Q Consensus       246 ~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~-~~~~~~~~~  324 (533)
                             |++++++++++      ++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|... .+.+.    
T Consensus       120 -------d~e~l~~~l~~------~tklV~vesp~NptG~v~d---l~~I~~la~~~gi~livD~t~a~~~~~~~~----  179 (397)
T PRK05939        120 -------DVQNVAAAIRP------NTRMVFVETIANPGTQVAD---LAGIGALCRERGLLYVVDNTMTSPWLFRPK----  179 (397)
T ss_pred             -------CHHHHHHhCCC------CCeEEEEECCCCCCCCHHh---HHHHHHHHHHcCCEEEEECCcccccccCcc----
Confidence                   78999999976      8999999999999999855   999999999999999999998532 12110    


Q ss_pred             cHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEE
Q 009517          325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV  365 (533)
Q Consensus       325 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~  365 (533)
                                   ..+..|++.|+||.+ +..|.++|++++
T Consensus       180 -------------~~gaDivv~S~sK~~-~g~g~~igg~v~  206 (397)
T PRK05939        180 -------------DVGASLVINSLSKYI-AGHGNALGGAVT  206 (397)
T ss_pred             -------------ccCCEEEEecCeecc-cCCCCeEEEEEe
Confidence                         112348899999999 558999999876

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=99.86  E-value=6.6e-19  Score=180.27  Aligned_cols=194  Identities=17%  Similarity=0.257  Sum_probs=146.0

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      ..+.++++.+.+..     ...|    |..++++++++++.+.+|    .+++++++|+++|+.+++..+..++||+|++
T Consensus        10 ~~~~~~~~~~~l~~-----~~~~----g~~~~~~~~e~~la~~~g----~~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv   76 (375)
T PRK11706         10 VGTELDYIQQAMSS-----GKLC----GDGGFTRRCQQWLEQRFG----SAKVLLTPSCTAALEMAALLLDIQPGDEVIM   76 (375)
T ss_pred             CHHHHHHHHHHHHc-----CCcc----CCCHHHHHHHHHHHHHhC----CCeEEEECCHHHHHHHHHHHhCCCCCCEEEE
Confidence            45567777777664     1122    233566667666666545    4689999999999999887663278999999


Q ss_pred             cCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHH
Q 009517          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (533)
Q Consensus       221 ~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~  300 (533)
                      +.|+|..+...+...|++++.++++++ +|.+|++++++++++      ++++|+++|   +||...+   +++|.++|+
T Consensus        77 ~~~t~~~~~~~~~~~G~~~v~~d~d~~-~~~~d~~~le~~i~~------~tk~i~~~~---~~G~~~~---~~~i~~la~  143 (375)
T PRK11706         77 PSYTFVSTANAFVLRGAKIVFVDIRPD-TMNIDETLIEAAITP------KTRAIVPVH---YAGVACE---MDTIMALAK  143 (375)
T ss_pred             CCCCcHHHHHHHHHcCCEEEEEecCCC-cCCcCHHHHHHhcCC------CCeEEEEeC---CCCCccC---HHHHHHHHH
Confidence            999999999999999999999999864 688999999999976      789998764   6898766   789999999


Q ss_pred             HcCCEEEEcccccccc-ccCCCCcccHHHHHhhcCCCCCCceEEEEecCC--ccCCCCCCCeeEEEEEecCCHHHHHHHH
Q 009517          301 KEGLVLLADEVYQENV-YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVS--KGYYGECGKRGGYMEVTGFSAEVREQIY  377 (533)
Q Consensus       301 ~~~~~lI~De~y~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~S--K~~~gl~G~riG~v~~~~~~~~~~~~l~  377 (533)
                      ++|++||+|++|+.+. +.+ .+..   .+        .+   +.+.||+  |.+ + +|.+.+++..   ++++.+.+.
T Consensus       144 ~~~i~vIeD~a~a~g~~~~~-~~~g---~~--------~~---~~~~Sf~~~K~l-~-~g~gG~~~~~---~~~~~~~~~  203 (375)
T PRK11706        144 KHNLFVVEDAAQGVMSTYKG-RALG---TI--------GH---IGCFSFHETKNY-T-AGEGGALLIN---DPALIERAE  203 (375)
T ss_pred             HcCCEEEEECccccccccCC-eeee---cC--------cC---EEEEeCCCCccc-c-ccCCeEEEEC---CHHHHHHHH
Confidence            9999999999998765 332 1111   10        12   3344444  998 4 5888888765   888888776


Q ss_pred             Hhh
Q 009517          378 KVA  380 (533)
Q Consensus       378 ~~~  380 (533)
                      .+.
T Consensus       204 ~~~  206 (375)
T PRK11706        204 IIR  206 (375)
T ss_pred             HHH
Confidence            665

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.86  E-value=6.4e-19  Score=181.89  Aligned_cols=155  Identities=18%  Similarity=0.198  Sum_probs=121.7

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHH----hCCeEEEEec
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL----HGGTLVPYYL  244 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~----~g~~~~~v~~  244 (533)
                      ..+|++++|++.+        .+..+++++|++|+..++..++ ++||+|+++.+.|.+....+..    .|.++..++ 
T Consensus        60 ~~~Le~~lA~l~g--------~~~~l~~ssG~~Ai~~al~al~-~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~d-  129 (425)
T PRK06084         60 NDVLEQRVAALEG--------GVGALAVASGMAAITYAIQTIA-EAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAA-  129 (425)
T ss_pred             HHHHHHHHHHHhC--------CCceeEehhHHHHHHHHHHHHh-CCCCEEEEeCCCcchHHHHHHHhcccceeEEEEEC-
Confidence            5688888888864        3456778888899999999988 7999999999999864444432    455555554 


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcc
Q 009517          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (533)
Q Consensus       245 ~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~  324 (533)
                            ..|++.+++++++      ++++|++++|+||||.+++   +++|.++|+++|+++|+|++|..... . .+  
T Consensus       130 ------~~d~e~le~ai~~------~tklV~lesp~NPtG~v~d---l~~I~~la~~~~i~vVvD~a~a~~~~-~-~p--  190 (425)
T PRK06084        130 ------HDDIAALEALIDE------RTKAVFCESIGNPAGNIID---IQALADAAHRHGVPLIVDNTVATPVL-C-RP--  190 (425)
T ss_pred             ------CCCHHHHHHHhcc------CCcEEEEeCCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccc-C-Ch--
Confidence                  2389999999987      7999999999999999998   89999999999999999999974322 1 11  


Q ss_pred             cHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEE
Q 009517          325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV  365 (533)
Q Consensus       325 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~  365 (533)
                          +  ++   ..|   |++.|++|.+ +.+|.++|.+++
T Consensus       191 ----~--~~---gaD---ivv~S~tK~l-~G~g~~~gG~v~  218 (425)
T PRK06084        191 ----F--EH---GAD---IVVHSLTKYI-GGHGTSIGGIVV  218 (425)
T ss_pred             ----h--hc---CCC---EEEECchhcc-cccccceeEEEE
Confidence                1  11   234   8899999999 558899988776

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=99.85  E-value=7.8e-20  Score=183.17  Aligned_cols=338  Identities=16%  Similarity=0.168  Sum_probs=219.7

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc------CC
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR------SE  214 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~------~~  214 (533)
                      .+++.+++.+|+.+.+......+.... ..+|-+.+++..-+     -+-++|++++||++|++.+++..+.      +|
T Consensus        62 ~~~i~~Ai~~Q~~~l~~~~~~~~t~~P-a~~LA~~L~~~aP~-----~~l~~vFf~~sGSeAvEtAlKma~qY~~~~G~p  135 (449)
T COG0161          62 RPEIAEAIKKQLDKLPHVMFGGFTHEP-AIELAEKLAELAPE-----GGLDHVFFTDSGSEAVETALKMALQYWRARGQP  135 (449)
T ss_pred             CHHHHHHHHHHHHhCCchhhcccCCch-HHHHHHHHHHhCCC-----CCccEEEEeCCchHHHHHHHHHHHHHHHhcCCC
Confidence            488999999999986431112222222 44555555555310     1257899999999999999998752      24


Q ss_pred             C-CeEEEcCCcCcchHHHHHHhCC--------------eEEEEecCC---CCCCC-------CCHHHHHHHHHHHHhcC-
Q 009517          215 N-DGILCPIPQYPLYSASIALHGG--------------TLVPYYLDE---ATGWG-------LETSEVKKQLEAAKAKG-  268 (533)
Q Consensus       215 g-d~Vlv~~p~~~~~~~~~~~~g~--------------~~~~v~~~~---~~~~~-------ld~~~l~~~i~~~~~~g-  268 (533)
                      + .+++.-..+|++-.......|.              .+..++...   .+.++       -..++|++.|..+   | 
T Consensus       136 ~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~~---g~  212 (449)
T COG0161         136 QRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILEH---GP  212 (449)
T ss_pred             cceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHHhc---Cc
Confidence            3 3488888899875443333322              111111111   00001       1245677777664   4 


Q ss_pred             CCeeEEEEeCCCCC-Ccc-CCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEe
Q 009517          269 ITVRALVVINPGNP-TGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQ  346 (533)
Q Consensus       269 ~~~~~iil~~p~NP-tG~-~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~  346 (533)
                      .++.++|++....- +|+ ++++..|+++.++|++||+++|+||+-++|..+|.       .+..+..++.||     +-
T Consensus       213 ~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~-------~FA~e~~gi~PD-----i~  280 (449)
T COG0161         213 ETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGK-------MFACEHAGIVPD-----IL  280 (449)
T ss_pred             ccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCch-------hhhhhhcCCCCC-----ee
Confidence            36777777765554 776 56666799999999999999999999999888775       233444445788     66


Q ss_pred             cCCccCCCCCC-CeeEEEEEecCCHHHHHHHHHh------hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHH
Q 009517          347 SVSKGYYGECG-KRGGYMEVTGFSAEVREQIYKV------ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGIL  419 (533)
Q Consensus       347 S~SK~~~gl~G-~riG~v~~~~~~~~~~~~l~~~------~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~  419 (533)
                      +++|.+.|  | +++|.+++   .+++.+.+..-      +..|++++|++++++.+.|+.           .+ .+.+.
T Consensus       281 ~~aKGLT~--GY~Pl~a~l~---~~~I~~~~~~~~~~~f~HG~TYsghPlacAaAla~L~i-----------~e-~e~l~  343 (449)
T COG0161         281 CLAKGLTG--GYLPLSAVLT---SDRIYEAFSDGDAGAFMHGHTYSGNPLACAAALANLDI-----------LE-EEDLL  343 (449)
T ss_pred             eecccccc--cchhhHhHhh---hHHHHHHHhcccCCeeccCCccccCHHHHHHHHHHHHH-----------HH-hcCHH
Confidence            78998853  5 89999888   89998888764      236799999999999888741           11 24455


Q ss_pred             HHHHHHHHHHHHHHhc-C---CCceEecCCceeEEecccCCCHHHHHHHHhcCC-CChHHHHHHHHHccceEEEcCCCCC
Q 009517          420 SSLARRAKTLEDAFNS-L---EGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKT-VPDAFYCRRLLNATGIVLVPGSGFG  494 (533)
Q Consensus       420 ~~~~~~~~~l~~~L~~-~---~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~gV~v~pg~~f~  494 (533)
                      ++.++...++.+.|.+ +   |.+.-++..|.+... .+..+.+     .+... ..-...+...+.++|++++|.   |
T Consensus       344 ~~~~~~~~~l~~~L~~~l~~~p~VgdVR~~Gli~~i-Elv~d~~-----t~~~f~~~~~~~~~~~~~e~Gl~iRp~---g  414 (449)
T COG0161         344 ERVAEIGAYLQAGLQAALADHPLVGDVRGLGLIGAI-ELVADKA-----TKTPFEARVGARVRAAALERGLLIRPL---G  414 (449)
T ss_pred             HHHHHHHHHHHHHHHHhcccCCcEEEeeccceEEEE-EEecccc-----cccchhhhHHHHHHHHHHHCCeEEeec---C
Confidence            6666666777777765 3   456667777755442 2321110     00000 001223456667899999984   3


Q ss_pred             CCCCCceEEEEe--cCCcCcHHHHHHHHHHHHHHHHHH
Q 009517          495 QVPGTWHFRCTI--LPQEDKIPAIVTRLTDFHKNFMDK  530 (533)
Q Consensus       495 ~~~g~~~iRis~--~~~~e~i~~~~~~l~~~l~~~~~~  530 (533)
                      .     .+-+++  .+++++|+++++++.+++++....
T Consensus       415 ~-----~i~~~PPliit~~eid~l~~~l~~al~~~~~~  447 (449)
T COG0161         415 D-----VIYLMPPLIITREEIDELVDALREALDETLAD  447 (449)
T ss_pred             C-----EEEEcCCccCCHHHHHHHHHHHHHHHHHHHhc
Confidence            1     566666  389999999999999999987643

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.85  E-value=2.5e-19  Score=183.67  Aligned_cols=216  Identities=13%  Similarity=0.100  Sum_probs=156.5

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHH----HHHhCCeEEEEec
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS----IALHGGTLVPYYL  244 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~----~~~~g~~~~~v~~  244 (533)
                      ..+|.+.+|++.+        .+..+++++|+.|+.+++.+++ .+||+|+++.++|.+-...    +...|+++..+..
T Consensus        63 v~~lE~~la~leg--------~~~av~~~SG~aAi~~al~all-~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~  133 (432)
T PRK06702         63 LAAFEQKLAELEG--------GVGAVATASGQAAIMLAVLNIC-SSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNP  133 (432)
T ss_pred             HHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHhc-CCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECC
Confidence            6788888888864        3458889999999999999888 8999999999999865554    6778999888853


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcc
Q 009517          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (533)
Q Consensus       245 ~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~  324 (533)
                            .+|++.++++|++      +||+|++++|+||++.+++   +++|+++|+++|+++|+|++|..-.+      .
T Consensus       134 ------~~d~~~l~~~I~~------~Tk~I~~e~pgnP~~~v~D---i~~I~~iA~~~gi~livD~T~~tP~~------~  192 (432)
T PRK06702        134 ------NLTADEIVALAND------KTKLVYAESLGNPAMNVLN---FKEFSDAAKELEVPFIVDNTLATPYL------C  192 (432)
T ss_pred             ------CCCHHHHHHhCCc------CCeEEEEEcCCCccccccC---HHHHHHHHHHcCCEEEEECCCCchhh------C
Confidence                  4689999999987      8999999999999999999   99999999999999999999852111      0


Q ss_pred             cHHHHHhhcCCCCCCceEEEEecCCccCC----CCCCCee-----EEEEEecCCHHHH---------------------H
Q 009517          325 SFKKVSRSMGYGEKDISLVSFQSVSKGYY----GECGKRG-----GYMEVTGFSAEVR---------------------E  374 (533)
Q Consensus       325 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~----gl~G~ri-----G~v~~~~~~~~~~---------------------~  374 (533)
                      .  .+  +.   ..|   |++.|+||.++    +++|.++     +|...  .+.++.                     .
T Consensus       193 ~--pl--~~---GAD---Ivv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~  260 (432)
T PRK06702        193 Q--AF--EH---GAN---IIVHSTTKYIDGHASSLGGIVIDGGNFDWTNG--KYPELVEPDPSYHGVSYVQNFGAAAYIV  260 (432)
T ss_pred             C--hh--hc---CCC---EEEEccccccCCCcceeceEEEeCCCcccccc--cccccccccccccccchhhccchhhHHH
Confidence            0  01  11   234   88999999543    3444444     33322  111211                     1


Q ss_pred             HH--HHhhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Q 009517          375 QI--YKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGIT  440 (533)
Q Consensus       375 ~l--~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~  440 (533)
                      ..  ........+.+++.+..+...|+.              +..+.++..++...+.+.|++.|.+.
T Consensus       261 ~~~~~~~~~~g~~~sp~~a~l~~rgL~T--------------l~lR~~r~~~Na~~la~~L~~~p~V~  314 (432)
T PRK06702        261 KARVQLLRDYGNCMSPFNAYISNIGLET--------------LHLRMERHSENALAVAKWLADHERIE  314 (432)
T ss_pred             HHHHHHHHHccCCCCHHHHHHHHhccCc--------------HHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            11  112234567788888888777752              33444555678888999998876654

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=99.85  E-value=6.1e-19  Score=180.70  Aligned_cols=313  Identities=16%  Similarity=0.206  Sum_probs=213.6

Q ss_pred             CCHHHHHHHHHHHhcCCCCC-ccccCCC----cccHHHHHHHHHHHHhhcCCCCCC-CCEEEcCChHHHHHHHHHHh---
Q 009517          140 FSADSIERAWQILDQIPGRA-TGAYSHS----QGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLL---  210 (533)
Q Consensus       140 ~p~~v~~~~~~~~~~~~~~~-~~~Y~~~----~G~~~lr~aia~~~~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l---  210 (533)
                      .|+.|++++.+.+.+..... ...+...    .-+.+.|+.++++++      .++ ++|++++|+++++..++..+   
T Consensus        11 ~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg------~~~~~~v~~~~~~t~a~~~~~~~l~~~   84 (371)
T PF00266_consen   11 MPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLG------APPDEEVVFTSNGTEALNAVASSLLNP   84 (371)
T ss_dssp             -BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHT------SSTTEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcC------Cccccccccccccchhhhhhhhccccc
Confidence            48999999988876532211 0111111    123466777777765      556 78999999999999999999   


Q ss_pred             ccCCCCeEEEcCCcCcchH----HHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccC
Q 009517          211 IRSENDGILCPIPQYPLYS----ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV  286 (533)
Q Consensus       211 ~~~~gd~Vlv~~p~~~~~~----~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~  286 (533)
                      . ++|++|++.+-.|++..    .+.+..|+++..++.+...  .+|+++++++|++      ++++|++++.+|-||+.
T Consensus        85 ~-~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~~~--~~~~~~~~~~l~~------~~~lv~~~~~~~~tG~~  155 (371)
T PF00266_consen   85 L-KPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADPGG--SLDLEDLEEALNP------DTRLVSISHVENSTGVR  155 (371)
T ss_dssp             G-TTTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGTTS--SCSHHHHHHHHHT------TESEEEEESBETTTTBB
T ss_pred             c-ccccccccccccccccccccccccccchhhhccccccccc--hhhhhhhhhhhcc------ccceEEeecccccccEE
Confidence            5 78999999998888755    3344679999999987543  7899999999976      89999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEe
Q 009517          287 LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVT  366 (533)
Q Consensus       287 ~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~  366 (533)
                      .+   +++|.++|+++|+++++|.+++-    |..+ ..+    .++   +.|   +++.|..| |.|.+|  +|++.+ 
T Consensus       156 ~p---i~~I~~~~~~~~~~~~vD~~~~~----g~~~-id~----~~~---~~D---~~~~s~~K-l~gp~G--~g~l~v-  213 (371)
T PF00266_consen  156 NP---IEEIAKLAHEYGALLVVDAAQSA----GCVP-IDL----DEL---GAD---FLVFSSHK-LGGPPG--LGFLYV-  213 (371)
T ss_dssp             SS---HHHHHHHHHHTTSEEEEE-TTTT----TTSS---T----TTT---TES---EEEEESTS-TTSSST--EEEEEE-
T ss_pred             ee---eceehhhhhccCCceeEechhcc----cccc-ccc----ccc---ccc---eeeecccc-cCCCCc--hhhhee-
Confidence            99   99999999999999999999875    2211 111    111   233   67889999 767666  588877 


Q ss_pred             cCCHHHHHHHHHhhhc----------------------cccCChHHHHHHHHHcCCCCCCChhHHHH-HHHHHHHHHHHH
Q 009517          367 GFSAEVREQIYKVASV----------------------NLCSNISGQILASLVMSPPKVGDESYESY-CAERDGILSSLA  423 (533)
Q Consensus       367 ~~~~~~~~~l~~~~~~----------------------~~~~~~~~q~a~~~~L~~~~~~~~~~~~~-~~~~~~~~~~~~  423 (533)
                        +++.++.+.+....                      ..+++.....++..+++          .+ ...++++.++..
T Consensus       214 --~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~----------~~~~~g~~~i~~~~~  281 (371)
T PF00266_consen  214 --RPEAIERLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALK----------LLEEIGIERIRERIR  281 (371)
T ss_dssp             --EHHHHHHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHH----------HHHHHHHHHHHHHHH
T ss_pred             --hhhhhhccccccccccccccccchhcccccccccccccceeeehhhhHHHHHh----------hhhccccccchhhhh
Confidence              88888887532210                      01345555555555552          12 223567778888


Q ss_pred             HHHHHHHHHHhcCCCceEecC-----CceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCC--
Q 009517          424 RRAKTLEDAFNSLEGITCNKA-----EGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQV--  496 (533)
Q Consensus       424 ~~~~~l~~~L~~~~g~~~~~~-----~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~--  496 (533)
                      +..+++.+.|.+++++.++.|     .+++..+ .++  .          . +... +.+.|+++||.+..|..+...  
T Consensus       282 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~-~~~--~----------~-~~~~-~~~~L~~~~I~~~~G~~~~~~~~  346 (371)
T PF00266_consen  282 ELAEYLREALEELPGIEVLGPDDEPRRPSIVSF-NLP--G----------S-DADD-VVKYLEERGIAVSTGSACAGPSL  346 (371)
T ss_dssp             HHHHHHHHHHHHTTTEEESSSSCGGBGTTEEEE-EET--T----------S-SHHH-HHHHHHHHTEEEEESTTTCHHHH
T ss_pred             hHHHHHHhhhhcCCceeEeeecccccccceEEE-eec--C----------C-CHHH-HHHHHhhcCEEEeccCcccHHHH
Confidence            889999999999988777543     2444333 122  1          1 1223 446667779999997765400  


Q ss_pred             ---CCCceEEEEec--CCcCcHHHH
Q 009517          497 ---PGTWHFRCTIL--PQEDKIPAI  516 (533)
Q Consensus       497 ---~g~~~iRis~~--~~~e~i~~~  516 (533)
                         .-.+.||+|+.  .+++||+++
T Consensus       347 ~~~~~~~~iRvS~~~~nt~~dv~~l  371 (371)
T PF00266_consen  347 DILGMGGVIRVSLHYYNTEEDVDRL  371 (371)
T ss_dssp             HHHHTTTEEEEE-GTTSSHHHHHHH
T ss_pred             HHhCCCCEEEEeccCCCCHHHHhhC
Confidence               01149999996  788888764

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=99.85  E-value=2.2e-18  Score=176.99  Aligned_cols=317  Identities=17%  Similarity=0.150  Sum_probs=204.9

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHh-ccCCCCeEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL-IRSENDGIL  219 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~~gd~Vl  219 (533)
                      +.+.++++.+.+..    ..  |....+..+|+++++++++.        ++.++++|+++|+..++.++ + ++||+|+
T Consensus         9 ~~~~~~~v~~~~~~----~~--~~~g~~~~~le~~la~~~g~--------~~~v~~~sgt~al~~~l~al~~-~~Gd~Vi   73 (380)
T TIGR03588         9 DQDDIDAVVEVLKS----DF--LTQGPTVPAFEEALAEYVGA--------KYAVAFNSATSALHIACLALGV-GPGDRVW   73 (380)
T ss_pred             CHHHHHHHHHHHhc----CC--ccCChhHHHHHHHHHHHHCC--------CeEEEEcCHHHHHHHHHHHcCC-CCCCEEE
Confidence            56678888887765    12  33334478999999999852        35667778999999999998 6 7999999


Q ss_pred             EcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHH
Q 009517          220 CPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC  299 (533)
Q Consensus       220 v~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~  299 (533)
                      ++.|+|..+...+...|++++.++++++ ++.+|++++++++++.  ..+++++|+++|   ++|...+   +++|+++|
T Consensus        74 v~~~~~~~~~~~~~~~G~~~~~~~~~~~-~~~~d~~~l~~~i~~~--~~~~t~~v~~~~---~~G~~~~---~~~i~~l~  144 (380)
T TIGR03588        74 TTPITFVATANCALYCGAKVDFVDIDPD-TGNIDEDALEKKLAAA--KGKLPKAIVPVD---FAGKSVD---MQAIAALA  144 (380)
T ss_pred             eCCcchHHHHHHHHHcCCEEEEEecCCC-cCCcCHHHHHHHhhcc--cCCCceEEEEeC---CCCccCC---HHHHHHHH
Confidence            9999999999999999999999999754 5789999999999831  001788888554   6888776   89999999


Q ss_pred             HHcCCEEEEccccccc-cccCCCCcccHHHHHhhcCCCCCCceEEEEecCC--ccCCCCCCCeeEEEEEecCCHHHHHHH
Q 009517          300 KKEGLVLLADEVYQEN-VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVS--KGYYGECGKRGGYMEVTGFSAEVREQI  376 (533)
Q Consensus       300 ~~~~~~lI~De~y~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~S--K~~~gl~G~riG~v~~~~~~~~~~~~l  376 (533)
                      ++||++||+|++++.. .+.+. +...    . .    ..|   +.+.||+  |.+ + .| ..|+++.  .++++.+.+
T Consensus       145 ~~~~~~lI~D~a~a~g~~~~~~-~~g~----~-~----~~d---~~~~S~~~~K~~-~-~~-~GG~v~~--~~~~~~~~~  206 (380)
T TIGR03588       145 KKHGLKIIEDASHALGAEYGGK-PVGN----C-R----YAD---ATVFSFHPVKII-T-TA-EGGAVTT--NDEELAERM  206 (380)
T ss_pred             HHcCCEEEEECCCcccCccCCE-eCCC----c-c----ccc---eEEEecCCCCcc-c-cc-CceEEEE--CCHHHHHHH
Confidence            9999999999999753 23331 1111    0 0    123   5677776  877 3 23 5777776  367888777


Q ss_pred             HHhhhccccC--------------------------ChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 009517          377 YKVASVNLCS--------------------------NISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLE  430 (533)
Q Consensus       377 ~~~~~~~~~~--------------------------~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  430 (533)
                      +.+.......                          +.+..+++...              ++.++.+.++-+++.+++.
T Consensus       207 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~q--------------L~~l~~~~~~r~~~~~~~~  272 (380)
T TIGR03588       207 RLLRSHGITKDPLLFEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQ--------------LKKLDRFVAKRREIAARYD  272 (380)
T ss_pred             HHHHHCCCCCCcccccccccCcceeeeeccccccCccHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
Confidence            6654311110                          11111111111              2234555556666777888


Q ss_pred             HHHhcCCCceEecC-Cc---eeEEe-cccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCC-------C--C
Q 009517          431 DAFNSLEGITCNKA-EG---AMYLF-PRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFG-------Q--V  496 (533)
Q Consensus       431 ~~L~~~~g~~~~~~-~g---g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~-------~--~  496 (533)
                      +.|.+++++....+ .+   ..+.+ +.+....         +. ....+ .+.|+++||.+.+....-       .  .
T Consensus       273 ~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---------~~-~r~~l-~~~L~~~gI~~~~~~~~~~~~~~~~~~~~  341 (380)
T TIGR03588       273 RLLKDLPYFTPLTIPLGSKSAWHLYPILLDQEF---------GC-TRKEV-FEALRAAGIGVQVHYIPVHLQPYYRQGFG  341 (380)
T ss_pred             HHhcCCCCccCCCCCCCCEeEEEEEEEEECCcC---------CC-CHHHH-HHHHHHCCCCcccCCcccccChhhhccCC
Confidence            89988876664332 11   22222 1222100         01 12333 355678899887432110       0  0


Q ss_pred             CC---------CceEEEEec--CCcCcHHHHHHHHHHHH
Q 009517          497 PG---------TWHFRCTIL--PQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       497 ~g---------~~~iRis~~--~~~e~i~~~~~~l~~~l  524 (533)
                      ..         .+.|++.+.  .++++++..++.|++++
T Consensus       342 ~~~~p~a~~~~~~~l~lP~~~~l~~~dv~~i~~~l~~~~  380 (380)
T TIGR03588       342 DGDLPSAENFYLAEISLPLHPALTLEQQQRVVETLRKVL  380 (380)
T ss_pred             cCCCcHHHHHHhceEEcCCCCCCCHHHHHHHHHHHHHhC
Confidence            00         136777774  78889999998888764

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=99.85  E-value=1.5e-18  Score=177.05  Aligned_cols=212  Identities=15%  Similarity=0.142  Sum_probs=145.0

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchH----HHHHHhCCeEEEEec
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS----ASIALHGGTLVPYYL  244 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~----~~~~~~g~~~~~v~~  244 (533)
                      ...|+++++++.+        .+..+++++|+.|+..++. ++ ++||+|++++|.|++..    ..+...|+++..++.
T Consensus        52 ~~~Le~~la~l~g--------~~~al~~~SG~~Al~~~l~-~l-~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~~vd~  121 (380)
T PRK06176         52 RFALEELIADLEG--------GVKGFAFASGLAGIHAVFS-LF-QSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTIIDT  121 (380)
T ss_pred             HHHHHHHHHHHhC--------CCCEEEECCHHHHHHHHHH-Hc-CCCCEEEEcCCChhHHHHHHHHHHHhcCeEEEEcCC
Confidence            6788888888864        2334555556678887775 55 79999999999997643    344556888777753


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcc
Q 009517          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (533)
Q Consensus       245 ~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~  324 (533)
                             .|++++++++++      ++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|....+.  .+. 
T Consensus       122 -------~d~e~l~~ai~~------~t~lV~lesP~Nptg~~~d---i~~I~~la~~~gi~vivD~t~a~~~~~--~p~-  182 (380)
T PRK06176        122 -------SDLSQIKKAIKP------NTKALYLETPSNPLLKITD---LAQCASVAKDHGLLTIVDNTFATPYYQ--NPL-  182 (380)
T ss_pred             -------CCHHHHHHhcCc------CceEEEEECCCCCCceecC---HHHHHHHHHHcCCEEEEECCccccccC--Ccc-
Confidence                   379999999876      7999999999999999988   889999999999999999999864332  111 


Q ss_pred             cHHHHHhhcCCCCCCceEEEEecCCccCCCCCC-CeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCC
Q 009517          325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPK  402 (533)
Q Consensus       325 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G-~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~  402 (533)
                             ++   ..|   +++.|++|.++| +| .-.|++++  .++++.+.+...+. .....++...+.+...++   
T Consensus       183 -------~~---gaD---ivv~S~tK~l~g-~~d~~gG~vv~--~~~~~~~~~~~~~~~~G~~~~~~~~~l~~~gl~---  243 (380)
T PRK06176        183 -------LL---GAD---IVVHSGTKYLGG-HSDVVAGLVTT--NNEALAQEIAFFQNAIGGVLGPQDSWLLQRGIK---  243 (380)
T ss_pred             -------cc---CCC---EEEecCceeccC-CccceeeEEEe--cHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccC---
Confidence                   11   234   789999999954 44 45676665  35667777765554 233334544444433332   


Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 009517          403 VGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGI  439 (533)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~  439 (533)
                                 .+....++..++...+.+.|++.|.+
T Consensus       244 -----------tl~~R~~~~~~~a~~la~~L~~~p~v  269 (380)
T PRK06176        244 -----------TLGLRMEAHQKNALCVAEFLEKHPKV  269 (380)
T ss_pred             -----------cHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence                       12223334445566677777766544

>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]

Probab=99.85  E-value=3.5e-19  Score=170.62  Aligned_cols=334  Identities=16%  Similarity=0.184  Sum_probs=222.6

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCC-CeEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-DGIL  219 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vl  219 (533)
                      +|++++++.+++..... ....|.... ..+|-++++..+-      -+-+.++++|+++||.+++++.+....| -.|+
T Consensus        68 hP~v~~a~~kQl~~l~H-~t~~~~~~p-i~~~Ae~L~s~~P------~~l~~vfF~nsGsEANelal~mar~Yt~~~diI  139 (442)
T KOG1404|consen   68 HPDVVAAAVKQLKKLYH-TTSGYLNPP-IHDLAEALVSKLP------GDLKVVFFVNSGSEANELALKMARLYTGNLDII  139 (442)
T ss_pred             ChHHHHHHHHhhhhhEE-eeccccCCc-HHHHHHHHHHhCC------CCceEEEEecCCchHHHHHHHHHHHhcCCceEE
Confidence            37899999998876544 355666555 6788777777763      2344689999999999999998753444 4577


Q ss_pred             EcCCcCcchHHHHHH-hCCeEEEEecCCCC--------------CCCCC-----H----HHHHHHHHHHHhcCC-CeeEE
Q 009517          220 CPIPQYPLYSASIAL-HGGTLVPYYLDEAT--------------GWGLE-----T----SEVKKQLEAAKAKGI-TVRAL  274 (533)
Q Consensus       220 v~~p~~~~~~~~~~~-~g~~~~~v~~~~~~--------------~~~ld-----~----~~l~~~i~~~~~~g~-~~~~i  274 (533)
                      ....+|++....... -|......++....              -|+=+     -    +++++.|...   ++ .+.++
T Consensus       140 a~r~~YHG~t~~t~glt~~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~~l~d~i~~~---~~~~vAaf  216 (442)
T KOG1404|consen  140 ARRNSYHGNTLYTLGLTGLSPWKQNFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRYAKELEDLILYD---GPETVAAF  216 (442)
T ss_pred             EeeccccCCchhhcccccCCcccccCCCCCCcccccCCCCcccccCCCCchhhhHHHHHHHHHHHHHhc---CCCceeEE
Confidence            777888875544332 23333332222110              01111     2    3444444432   22 35666


Q ss_pred             EEeCCCCCCcc-CCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCC
Q 009517          275 VVINPGNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYY  353 (533)
Q Consensus       275 il~~p~NPtG~-~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~  353 (533)
                      |.+..+.-.|+ .+++..+++..++|+++|.+.|.||++++|.+.|  .++.+.+  .++   -||     |.|++|.+ 
T Consensus       217 iaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG--~~wgfe~--h~v---~PD-----IvTmAKgi-  283 (442)
T KOG1404|consen  217 IAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTG--HMWGFES--HGV---VPD-----IVTMAKGI-  283 (442)
T ss_pred             EeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhcccccc--ccccccc--cCC---Ccc-----HHHHHhhc-
Confidence            76677777786 5677789999999999999999999999988877  3555543  222   577     78999999 


Q ss_pred             CCCCCeeEEEEEecCCHHHHHHHHHhh-h-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009517          354 GECGKRGGYMEVTGFSAEVREQIYKVA-S-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLED  431 (533)
Q Consensus       354 gl~G~riG~v~~~~~~~~~~~~l~~~~-~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  431 (533)
                      | .|+++|.++.   .+|+++-+.+-. . .|++++|++++++.++|+-           .+ .+++.+..++...+|.+
T Consensus       284 G-nG~Pl~AVvt---t~EIa~v~~~~~~~fnTyggnP~a~avg~aVL~V-----------ik-ee~LqE~aa~vG~yl~~  347 (442)
T KOG1404|consen  284 G-NGFPLGAVVT---TPEIADVLNQKSSHFNTYGGNPVACAVGLAVLKV-----------IK-EENLQENAAEVGSYLLE  347 (442)
T ss_pred             c-CCCcceeeec---CHHHHHHHHhccccccccCCCchhHHHHHHHHHH-----------HH-HHhHHHHHHHHHHHHHH
Confidence            5 6999999998   999999887755 3 7899999999999999852           22 35566667777788888


Q ss_pred             HHhcC----CCceEecCCceeEEecccCCCHHHHHHHHhcC-CCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEe
Q 009517          432 AFNSL----EGITCNKAEGAMYLFPRIQLPEKAIKAAEAEK-TVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTI  506 (533)
Q Consensus       432 ~L~~~----~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~  506 (533)
                      .|.++    |-+.-++..|-|.-   +++-.   ++.+... ......++.+.+++.|+++--|..+|.     .|||++
T Consensus       348 ~l~~l~d~h~iIGdVRG~GLm~G---vE~V~---dk~~~~pp~~~~~~~i~~~cke~Gvlvg~g~i~G~-----vfriaP  416 (442)
T KOG1404|consen  348 KLAALKDKHPIIGDVRGRGLMLG---VELVS---DKSEPKPPATAEGAVIGEQCKELGVLVGKGGIHGN-----VFRIAP  416 (442)
T ss_pred             HHHHHhhcCCceeecccceeEEE---EEEec---ccCCCCCcchHHHHHHHHHHHHhCeeeecccccce-----EEEecC
Confidence            88775    44666777775433   22111   0000000 011223345667889999977777664     899999


Q ss_pred             --cCCcCcHHHHHHHHHHHHHH
Q 009517          507 --LPQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       507 --~~~~e~i~~~~~~l~~~l~~  526 (533)
                        ++|.++++-+++.. +++..
T Consensus       417 PlciT~edi~f~~~~~-~~~~~  437 (442)
T KOG1404|consen  417 PLCITKEDIDFAVEYF-EVLTS  437 (442)
T ss_pred             CeeccHHHHHHHHHHH-HHHhH
Confidence              48999996665544 34443

>TIGR01814 kynureninase kynureninase

Probab=99.84  E-value=1.6e-18  Score=179.58  Aligned_cols=318  Identities=14%  Similarity=0.089  Sum_probs=195.5

Q ss_pred             CHHHHHHHHHHHhcCCCCCc-cccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCC---C
Q 009517          141 SADSIERAWQILDQIPGRAT-GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN---D  216 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~-~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g---d  216 (533)
                      |..+.+++.+.+........ ..|....+...+.+++.+ + +..|  .++++|++|+|+++++..++..+. .++   +
T Consensus        40 p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~l~g--~~~~~v~~~~~~t~~l~~~~~~~~-~~~~~~~  114 (406)
T TIGR01814        40 PKAARNALKEELDKWAKIAIRGHNTGKAPWFTLDESLLK-L-RLVG--AKEDEVVVMNTLTINLHLLLASFY-KPTPKRY  114 (406)
T ss_pred             cHHHHHHHHHHHHHHHHhhhccCccCCCChhhhhhhhcc-c-cccC--CCCCcEEEeCCchHHHHHHHHHhc-CCcCCcc
Confidence            67777777766543211001 111101112222222222 1 3345  568899999999999999999875 554   3


Q ss_pred             eEEEcCCcCcchHH----HHHHhCCeE----EEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCC
Q 009517          217 GILCPIPQYPLYSA----SIALHGGTL----VPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLA  288 (533)
Q Consensus       217 ~Vlv~~p~~~~~~~----~~~~~g~~~----~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s  288 (533)
                      .|++....|+....    .++..|+++    +.++.+  .++.+|++.+++.++..   ++++++|++++++|.||.+++
T Consensus       115 ~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~--~~g~~~~~~l~~~~~~~---~~~t~lv~~~~v~~~tG~~~~  189 (406)
T TIGR01814       115 KILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEPR--EEETLRLEDILDTIEKN---GDDIAVILLSGVQYYTGQLFD  189 (406)
T ss_pred             EEEecCCCCChHHHHHHHHHHhcCCCcccceEEeccC--CCCccCHHHHHHHHHhc---CCCeEEEEEeccccccceecC
Confidence            68888888987333    345568876    344443  24567999999988642   237999999999999999998


Q ss_pred             HHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecC
Q 009517          289 EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGF  368 (533)
Q Consensus       289 ~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~  368 (533)
                         +++|+++|+++|+++++|++++.    |..+ .++    .++   .-|   +++.|..|++.|.||  .|.++.   
T Consensus       190 ---~~~i~~~~~~~g~~~~vD~aq~~----G~~~-id~----~~~---gvD---~~~~s~hK~l~g~pG--~~l~v~---  246 (406)
T TIGR01814       190 ---MAAITRAAHAKGALVGFDLAHAV----GNVP-LDL----HDW---GVD---FACWCTYKYLNAGPG--AGAFVH---  246 (406)
T ss_pred             ---HHHHHHHHHHcCCEEEEEccccc----CCcc-ccc----ccC---CCC---EEEEcCccccCCCCC--eEEEEe---
Confidence               99999999999999999999985    3222 111    111   234   778999998754456  332222   


Q ss_pred             CHHHHHHHHHhh-h-----------------------ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHH
Q 009517          369 SAEVREQIYKVA-S-----------------------VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLAR  424 (533)
Q Consensus       369 ~~~~~~~l~~~~-~-----------------------~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (533)
                      ++. ...+.... .                       ...+++..+..++.++|+.       +.  ....+.++++..+
T Consensus       247 ~~~-~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~-------~~--~~g~~~i~~~~~~  316 (406)
T TIGR01814       247 EKH-AHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDI-------FD--QAGMEALRKKSLL  316 (406)
T ss_pred             hhh-hhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHH-------HH--hcCHHHHHHHHHH
Confidence            322 22222110 0                       0123455565666656531       00  0124667777888


Q ss_pred             HHHHHHHHHhcC----CCceEecCC-----ceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCC
Q 009517          425 RAKTLEDAFNSL----EGITCNKAE-----GAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ  495 (533)
Q Consensus       425 ~~~~l~~~L~~~----~g~~~~~~~-----gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~  495 (533)
                      ..+++++.|+++    +|+.++.|.     +++..+   ..|.            ....+. +.|.++||.+..      
T Consensus       317 l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~---~~~~------------~~~~~~-~~L~~~gi~v~~------  374 (406)
T TIGR01814       317 LTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSL---THPV------------PGKAVF-QALIKRGVIGDK------  374 (406)
T ss_pred             HHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEE---EecC------------CHHHHH-HHHHHCCEEEec------
Confidence            888888888775    357766542     333332   2220            123333 445678998763      


Q ss_pred             CCCCceEEEEe-c--CCcCcHHHHHHHHHHHH
Q 009517          496 VPGTWHFRCTI-L--PQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       496 ~~g~~~iRis~-~--~~~e~i~~~~~~l~~~l  524 (533)
                       .+.+.||||+ .  +++++|++++++|++++
T Consensus       375 -~~~~~iRiS~~~~~nt~~did~l~~~l~~~~  405 (406)
T TIGR01814       375 -REPSVIRVAPVPLYNTFVDVYDAVNVLEEIL  405 (406)
T ss_pred             -cCCCeEEEechhccCCHHHHHHHHHHHHHHh
Confidence             1123899998 3  68899999999998764

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.84  E-value=9.2e-19  Score=181.34  Aligned_cols=324  Identities=12%  Similarity=0.090  Sum_probs=205.1

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC------C
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS------E  214 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~------~  214 (533)
                      ++++++++.+++.+... ....+.......++-+.+++..    +  -..+.|+++++|++|++.+++..+..      +
T Consensus        63 ~p~v~~ai~~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~----~--~~~~~v~f~~sGseA~e~AlklAr~~~~~~~~~  135 (427)
T TIGR00508        63 HPRLNAAAQKQIDKMSH-VMFGGFTHKPAIELCQKLVKMT----P--NALDCVFLADSGSVAVEVALKMALQYWQAKGEK  135 (427)
T ss_pred             CHHHHHHHHHHHHhcCC-ccccccCCHHHHHHHHHHHhhC----C--CCCCEEEEeCCcHHHHHHHHHHHHHHHHhhCCC
Confidence            68999999999886432 0111112222334444444432    2  22368999999999999999987521      2


Q ss_pred             C-CeEEEcCCcCcchHHHHHHh-CCe-------------EEEEecCCCCCCC-----CCHHHHHHHHHHHHhcCCCeeEE
Q 009517          215 N-DGILCPIPQYPLYSASIALH-GGT-------------LVPYYLDEATGWG-----LETSEVKKQLEAAKAKGITVRAL  274 (533)
Q Consensus       215 g-d~Vlv~~p~~~~~~~~~~~~-g~~-------------~~~v~~~~~~~~~-----ld~~~l~~~i~~~~~~g~~~~~i  274 (533)
                      | .+|+....+|++....+... +..             +..++.. ...+.     -|++++++.+...   +.++.+|
T Consensus       136 ~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~l~~~l~~~---~~~vaav  211 (427)
T TIGR00508       136 NRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAP-QNRFDEEWNEEAITPLAKLMELH---SDEIAAV  211 (427)
T ss_pred             CccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCC-CccccchhHHHHHHHHHHHHHhc---CCcEEEE
Confidence            3 67999999999875443332 211             0111110 00111     1456777777542   2367778


Q ss_pred             EEeCC-CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccC
Q 009517          275 VVINP-GNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGY  352 (533)
Q Consensus       275 il~~p-~NPtG~-~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~  352 (533)
                      +++.. ++-.|. .++.+.+++|.++|++||+++|+||++.++...|.  ......  .++   .+|     +.+++|++
T Consensus       212 ivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~--~~~~~~--~~v---~pD-----i~~~gK~l  279 (427)
T TIGR00508       212 ILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGK--LFACEH--AGV---VPD-----ILCVGKAL  279 (427)
T ss_pred             EEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCc--cchhhh--cCC---CCC-----EEEechhh
Confidence            77764 665665 56788999999999999999999999998766553  111111  122   566     33489999


Q ss_pred             CCCCCC-eeEEEEEecCCHHHHHHHHHh------hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 009517          353 YGECGK-RGGYMEVTGFSAEVREQIYKV------ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR  425 (533)
Q Consensus       353 ~gl~G~-riG~v~~~~~~~~~~~~l~~~------~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (533)
                      +  .|+ .++.+++   ++++++.+...      ...++..++++++++.++|+           ..+. +...++.+++
T Consensus       280 ~--gG~~p~~a~~~---~~~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~-----------~l~~-~~~~~~~~~~  342 (427)
T TIGR00508       280 T--GGYMTLSATVT---TDKVAQTISSGEAGCFMHGPTFMGNPLACAVAEASLA-----------ILLE-GEWQKQVSAI  342 (427)
T ss_pred             h--cCcccceEEEE---cHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHH-----------HHHh-CCHHHHHHHH
Confidence            4  485 8898887   88998888642      23567789999999888874           1111 2345667777


Q ss_pred             HHHHHHHHhcC---CCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceE
Q 009517          426 AKTLEDAFNSL---EGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHF  502 (533)
Q Consensus       426 ~~~l~~~L~~~---~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~i  502 (533)
                      .++|++.|+++   +++.-++..|.+..+ .+..+.            ....+. ..|.++||++.+.   +     +.+
T Consensus       343 ~~~l~~~L~~l~~~~~i~~vrg~G~~~~i-~~~~~~------------~~~~~~-~~l~~~Gv~~~~~---~-----~~l  400 (427)
T TIGR00508       343 ENQLKRELSPLRKNPVVKDVRVLGAIGVV-EMYKPV------------NVEELQ-KKFVEQGVWIRPF---G-----KLI  400 (427)
T ss_pred             HHHHHHHHHHhhcCCCEEeEeccccEEEE-EECCcc------------CHHHHH-HHHHHCCeEEEec---C-----CEE
Confidence            77788887776   233344455655433 232111            123333 4456689999762   1     278


Q ss_pred             EEEec--CCcCcHHHHHHHHHHHHHH
Q 009517          503 RCTIL--PQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       503 Ris~~--~~~e~i~~~~~~l~~~l~~  526 (533)
                      |+++.  +++++|+++++++++++++
T Consensus       401 ~~~ppl~~t~~~id~~~~~l~~~l~~  426 (427)
T TIGR00508       401 YVMPPYIITTEQLQKLTAALIEALHE  426 (427)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHhc
Confidence            99886  8999999999999998864

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=99.84  E-value=1.4e-19  Score=178.88  Aligned_cols=226  Identities=19%  Similarity=0.150  Sum_probs=154.7

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCC
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEAT  248 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~  248 (533)
                      +.++++.+|++++      . .+-+++++|+++++..++.+++ .+||+|+++.|+|..+...+...|++++.++.+...
T Consensus        61 i~~~~~~~A~~~g------a-~~~~~~~~Gst~a~~~~l~al~-~~gd~Vlv~~~~h~s~~~~~~~~g~~~~~v~~~~~~  132 (294)
T cd00615          61 IKEAQELAARAFG------A-KHTFFLVNGTSSSNKAVILAVC-GPGDKILIDRNCHKSVINGLVLSGAVPVYLKPERNP  132 (294)
T ss_pred             HHHHHHHHHHHhC------C-CCEEEEcCcHHHHHHHHHHHcC-CCCCEEEEeCCchHHHHHHHHHCCCEEEEecCccCc
Confidence            6788888998874      1 2334559999999999999998 899999999999999999999999999998876554


Q ss_pred             CC----CCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEcccccc-ccccCCCCc
Q 009517          249 GW----GLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE-NVYVPEKKF  323 (533)
Q Consensus       249 ~~----~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~-~~~~~~~~~  323 (533)
                      +|    .+|++.+++++++    .+++++|++++| ||||.+++   +++|+++|+++|+++|+||+|.. +.|.+..+ 
T Consensus       133 ~~~~~~~i~~~~l~~~l~~----~~~~k~v~l~~p-~~~G~~~d---l~~I~~~~~~~g~~livDeA~~~~~~~~~~~~-  203 (294)
T cd00615         133 YYGIAGGIPPETFKKALIE----HPDAKAAVITNP-TYYGICYN---LRKIVEEAHHRGLPVLVDEAHGAHFRFHPILP-  203 (294)
T ss_pred             ccCcCCCCCHHHHHHHHHh----CCCceEEEEECC-CCCCEecC---HHHHHHHHHhcCCeEEEECcchhhhccCcccC-
Confidence            43    6899999999975    236899999998 79999998   89999999999999999999964 44433211 


Q ss_pred             ccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh--ccccCChHHHHHHHHHcCCC
Q 009517          324 HSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS--VNLCSNISGQILASLVMSPP  401 (533)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~--~~~~~~~~~q~a~~~~L~~~  401 (533)
                      .+.    .      ..+..+++.|++|++   +|++.|+++...........+.....  .+.+++.....++..++.  
T Consensus       204 ~~~----~------~~~~div~~S~hK~l---~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ttsps~~~~asl~~a~~--  268 (294)
T cd00615         204 SSA----A------MAGADIVVQSTHKTL---PALTQGSMIHVKGDLVNPDRVNEALNLHQSTSPSYLILASLDVARA--  268 (294)
T ss_pred             cch----h------hcCCcEEEEchhccc---chHhHHHHHHhCCCcCCHHHHHHHHHHHCCCCcHHHHHHHHHHHHH--
Confidence            111    1      112348899999986   48887655432111011222322222  233444444444444432  


Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009517          402 KVGDESYESYCAERDGILSSLARRAKTLEDAFN  434 (533)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  434 (533)
                              ...++-++..+++.++.+.+++.|+
T Consensus       269 --------~~~~~g~~~~~~~~~~~~~~r~~l~  293 (294)
T cd00615         269 --------MMALEGKELVEELIELALYARQEIN  293 (294)
T ss_pred             --------HHHHHhHHHHHHHHHHHHHHHHHHh
Confidence                    1112223445556666666666654

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>PRK06149 hypothetical protein; Provisional

Probab=99.84  E-value=7.9e-19  Score=198.55  Aligned_cols=337  Identities=14%  Similarity=0.126  Sum_probs=211.1

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCC-CeEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-DGIL  219 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vl  219 (533)
                      ++++++++.+++.....  ...|.     .+....+++.+.+...  -..+.++++++|++|++.+++..+...| .+|+
T Consensus       601 hp~v~~Ai~~q~~~l~~--~~~~~-----~~~~~elae~L~~~~p--~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii  671 (972)
T PRK06149        601 HPRLAAAAARQWSLLNT--NSRFH-----YAAVAEFSERLAALAP--DGLDTVFLVNSGSEANDLAIRLAWAASGRRDVV  671 (972)
T ss_pred             CHHHHHHHHHHHHhccc--ccccc-----CHHHHHHHHHHHHhCC--CCcCEEEEeCCchHHHHHHHHHHHHhcCCCeEE
Confidence            68899999999886422  11121     1233444554443321  1246899999999999999997652234 6789


Q ss_pred             EcCCcCcchHHHHHHh-CC-------------eEEEEecCCC--CCCC-CC-----HHHHHHHHHHHHhcCCCeeEEEEe
Q 009517          220 CPIPQYPLYSASIALH-GG-------------TLVPYYLDEA--TGWG-LE-----TSEVKKQLEAAKAKGITVRALVVI  277 (533)
Q Consensus       220 v~~p~~~~~~~~~~~~-g~-------------~~~~v~~~~~--~~~~-ld-----~~~l~~~i~~~~~~g~~~~~iil~  277 (533)
                      ...-+|++........ +.             .+..++....  ..|. .+     .+++++.++.....+.++.+||++
T Consensus       672 ~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iAavI~E  751 (972)
T PRK06149        672 SVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDASGRGLAGFICE  751 (972)
T ss_pred             EEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHHHhhcCCceEEEEEc
Confidence            9999999865332211 10             0122221110  0121 12     245555554433334467788877


Q ss_pred             CCCCCCc-cCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCC
Q 009517          278 NPGNPTG-QVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGEC  356 (533)
Q Consensus       278 ~p~NPtG-~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~  356 (533)
                      ......| +.++++.+++|.++|++||+++|+||++++|...|. .+..+..     .++.||     +.+|+|.++  .
T Consensus       752 pv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~-~~~a~e~-----~gv~PD-----ivt~gK~lg--~  818 (972)
T PRK06149        752 PVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGH-YFWGFEQ-----QGVVPD-----IITMAKGMG--N  818 (972)
T ss_pred             ccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCc-cchhhhh-----cCCCCC-----EEEeccccc--C
Confidence            6544445 577888899999999999999999999999766553 1222211     122678     458999994  4


Q ss_pred             CCeeEEEEEecCCHHHHHHHHH--hhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009517          357 GKRGGYMEVTGFSAEVREQIYK--VASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFN  434 (533)
Q Consensus       357 G~riG~v~~~~~~~~~~~~l~~--~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  434 (533)
                      |+++|++++   .+++++.+..  ....+++.++++++++.+.|+.           .+ -+.+.+..+++.++|++.|+
T Consensus       819 G~Pl~av~~---~~~i~~~~~~~~~~~sT~~gnP~~~aaala~L~~-----------i~-~e~l~~~~~~~G~~l~~~L~  883 (972)
T PRK06149        819 GHPLGAVIT---RREIAEALEAEGYFFSSTGGSPVSCRIGMAVLDV-----------LR-EEKLQENARRVGDHLKARLE  883 (972)
T ss_pred             CeeeEEEEE---cHHHHhhhccCCcccCCCCCCHHHHHHHHHHHHH-----------HH-hcCHHHHHHHHHHHHHHHHH
Confidence            899999998   8999988764  1224568899999999988841           11 13455566666677777776


Q ss_pred             cC----CCceEecCCceeEEecccCCCHHHHHHHHhcCCCC-hHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--
Q 009517          435 SL----EGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVP-DAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--  507 (533)
Q Consensus       435 ~~----~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--  507 (533)
                      ++    |.+..++..|.|+.+ .+.....     ....... ...++ ..+.++||++.|...     ..+.+||.+.  
T Consensus       884 ~l~~~~~~i~~vrG~Gl~~gv-el~~~~~-----~~~~~~~~~~~i~-~~l~~~Gvl~~~~g~-----~~~vl~~~Ppl~  951 (972)
T PRK06149        884 ALADRHPLIGAVHGMGLYLGV-ELVRDRQ-----TLEPATEETAAIC-DRLLELGVIMQPTGD-----HLNILKIKPPLC  951 (972)
T ss_pred             HHHHhCCCeEEEeecceEEEE-EEecCcc-----cCCCChHHHHHHH-HHHHhCCeEEeecCC-----CCCEEEEECCCc
Confidence            54    446667777766543 2210000     0000000 12333 445568999987321     1238999885  


Q ss_pred             CCcCcHHHHHHHHHHHHHH
Q 009517          508 PQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       508 ~~~e~i~~~~~~l~~~l~~  526 (533)
                      +++++|++++++|++++++
T Consensus       952 it~~~id~~~~~l~~~l~~  970 (972)
T PRK06149        952 LDRESADFFVDMLDRVLTE  970 (972)
T ss_pred             CCHHHHHHHHHHHHHHHHh
Confidence            8999999999999999865

>PRK08297 L-lysine aminotransferase; Provisional

Probab=99.83  E-value=1.6e-18  Score=180.13  Aligned_cols=356  Identities=13%  Similarity=0.087  Sum_probs=211.5

Q ss_pred             HHHHHHHHHHhh-cCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHH--HHHHHHh
Q 009517           77 VSIAQRLQQELQ-TNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIE--RAWQILD  153 (533)
Q Consensus        77 ~~~~~~~~~~~~-~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~--~~~~~~~  153 (533)
                      +.++++...++. ||++      ++|+..|....                      ..+++    ++++++  ++.+++.
T Consensus        30 i~~a~G~~l~D~~dG~~------ylD~~~g~~~~----------------------~lGh~----~p~v~~~~ai~~ql~   77 (443)
T PRK08297         30 LERSQGSYLVDARTGRR------YLDMFTFFASS----------------------ALGMN----HPALADDPEFRAELG   77 (443)
T ss_pred             EEeccCCEEEECCCCCE------eeecccCHhhh----------------------cCCCC----ChHHhhHHHHHHHHH
Confidence            467777777773 7777      77775553221                      11111    578888  8888887


Q ss_pred             cCCCC--CccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC------------C-CCeE
Q 009517          154 QIPGR--ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS------------E-NDGI  218 (533)
Q Consensus       154 ~~~~~--~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~------------~-gd~V  218 (533)
                      +....  ....|. .....+|-+.+++..    + +...++|+++++|+||++.+++..+..            + ..+|
T Consensus        78 ~l~~~~~~~~~~~-~~~~~~la~~l~~~~----~-p~~~~~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~ki  151 (443)
T PRK08297         78 RAALNKPSNSDVY-TVEMARFVDTFARVL----G-DPELPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKV  151 (443)
T ss_pred             HhhhhccccCCcC-CHHHHHHHHHHHhhc----C-CCCCCEEEEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceE
Confidence            53200  011111 111333333333332    1 123469999999999999999988411            1 2579


Q ss_pred             EEcCCcCcchHHHHHHh-CCeEE---EEecC-------CCCCC-----C---C------CHHHHHHHHHHHHhcCCCeeE
Q 009517          219 LCPIPQYPLYSASIALH-GGTLV---PYYLD-------EATGW-----G---L------ETSEVKKQLEAAKAKGITVRA  273 (533)
Q Consensus       219 lv~~p~~~~~~~~~~~~-g~~~~---~v~~~-------~~~~~-----~---l------d~~~l~~~i~~~~~~g~~~~~  273 (533)
                      +....+|++....+... |....   .++..       +...+     .   .      +++.+++.+...   +.++.+
T Consensus       152 i~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~iAa  228 (443)
T PRK08297        152 LHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLRFPLPGEDLEEVEALEAEALAQARAAFERH---PHDIAC  228 (443)
T ss_pred             EEECCCcCCcchhhhhhcCCcccccccCCCCCccccCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHhC---CCcEEE
Confidence            99999999977654443 21110   00100       00000     0   0      234555666532   337888


Q ss_pred             EEEeCCCCCCcc-CCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccC
Q 009517          274 LVVINPGNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGY  352 (533)
Q Consensus       274 iil~~p~NPtG~-~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~  352 (533)
                      ||+...+...|. +++++.+++|.++|++||+++|+||++++|...|.  +.     ..+..++.||     +.+|+|.+
T Consensus       229 vI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~--~~-----a~~~~gv~PD-----iv~~gK~l  296 (443)
T PRK08297        229 FIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGT--AW-----AYQQLGVRPD-----IVAFGKKT  296 (443)
T ss_pred             EEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccch--HH-----HHHhcCCCCC-----EEEecccc
Confidence            888866655675 57888899999999999999999999999766553  11     1222233688     44689976


Q ss_pred             CCCCCCeeEEEEEecCCHHHHHHHHH------hhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 009517          353 YGECGKRGGYMEVTGFSAEVREQIYK------VASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRA  426 (533)
Q Consensus       353 ~gl~G~riG~v~~~~~~~~~~~~l~~------~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (533)
                       +     +|.+++   ..++.+.+..      ....|++.++++++++.+.|+.           .+ .+.+.++.+++.
T Consensus       297 -~-----~~a~l~---~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~-----------l~-~~~l~~~~~~~g  355 (443)
T PRK08297        297 -Q-----VCGIMA---GRRVDEVEDNVFAVSSRINSTWGGNLVDMVRARRILEV-----------IE-EDGLVENAARQG  355 (443)
T ss_pred             -c-----ccceec---chHHHHhhhhhccCccccCCCCCccHHHHHHHHHHHHH-----------HH-hcCHHHHHHHHH
Confidence             3     233333   4443322211      1236788999999999888741           11 123455556666


Q ss_pred             HHHHHHHhcC----CCce-EecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCce
Q 009517          427 KTLEDAFNSL----EGIT-CNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWH  501 (533)
Q Consensus       427 ~~l~~~L~~~----~g~~-~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~  501 (533)
                      +++.+.|+++    |.+. .+++.|.|+. +.+..+.            ....++.. +.++||++.|+.       .+.
T Consensus       356 ~~l~~~L~~l~~~~~~~~~~vrg~G~~~~-i~~~~~~------------~~~~~~~~-l~~~Gvl~~~~~-------~~~  414 (443)
T PRK08297        356 EYLLARLEELAAEFPAVVSNVRGRGLMCA-FDLPTTA------------DRDEVIRR-LWEEGVLVLPCG-------ERS  414 (443)
T ss_pred             HHHHHHHHHHHHHCCCcceeeeccceEEE-EEecCHH------------HHHHHHHH-HHHCCEEEecCC-------CCe
Confidence            6666666553    4343 5667765543 3333111            12234444 447899998732       126


Q ss_pred             EEEEe--cCCcCcHHHHHHHHHHHHHHH
Q 009517          502 FRCTI--LPQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       502 iRis~--~~~~e~i~~~~~~l~~~l~~~  527 (533)
                      +||++  .+++++|++++++|+++++++
T Consensus       415 lr~~P~l~~t~~eid~~l~~l~~~l~~~  442 (443)
T PRK08297        415 IRFRPALTVTTEEIDAAIDALRRALPEV  442 (443)
T ss_pred             EEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence            88866  489999999999999998764

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=99.83  E-value=5.1e-19  Score=183.59  Aligned_cols=346  Identities=8%  Similarity=0.035  Sum_probs=207.9

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      ++.++++...++.||++      +||+..|....                      ..+++    ++.+++++.+++.+.
T Consensus        33 ~~~~~~G~~l~D~dG~~------ylD~~~g~~~~----------------------~lGh~----~p~v~~Ai~~q~~~~   80 (431)
T PRK06209         33 FIQRGSGAHVWDVDGNE------YIEYGMGLRAV----------------------GLGHA----YPPVVEAVREALQDG   80 (431)
T ss_pred             EEEeccCCEEEeCCCCE------EEEccccccch----------------------hcCCC----CHHHHHHHHHHHHhC
Confidence            56777777777778888      77776554322                      11111    689999999999873


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCC-eEEEc-CCcCcchHHHHH
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND-GILCP-IPQYPLYSASIA  233 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd-~Vlv~-~p~~~~~~~~~~  233 (533)
                      .     .|...   ...+-.+|+.+.+...   ..+.++++++|++|++.+++..+...|. +|+.. .-+|+++.... 
T Consensus        81 ~-----~~~~~---~~~~~~la~~l~~~~p---~~~~v~f~~sGseA~e~AlklAr~~tgr~~i~~~~~~~~h~~~~~~-  148 (431)
T PRK06209         81 C-----NFTRP---SAIELDAAESFLELID---GADMVKFCKNGSDATSAAVRLARAYTGRDLVARCADHPFFSTDDWF-  148 (431)
T ss_pred             c-----CCCCC---CHHHHHHHHHHHHhCC---ccceEEEecCHHHHHHHHHHHHHHHhCCCeEEEeccCccccccccc-
Confidence            2     22211   1222234444443221   2368999999999999999987633453 45544 33443321111 


Q ss_pred             HhCCeEE-----------EEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHc
Q 009517          234 LHGGTLV-----------PYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKE  302 (533)
Q Consensus       234 ~~g~~~~-----------~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~  302 (533)
                       +|....           .+.+.     .-|++.+++.++..   ..++.+|++....   |...+.+.+++|.++|++|
T Consensus       149 -~g~~~~~~~~~~~~~~~~~~~~-----~~d~~~l~~~l~~~---~~~~aavi~Epv~---g~~~~~~~l~~l~~lc~~~  216 (431)
T PRK06209        149 -IGTTPMSAGIPASVSALTVTFR-----YNDIASLEALFEDH---PGRIACVILEPAT---ADEPQDGFLHEVRRLCHEN  216 (431)
T ss_pred             -cccCCCCCCCChhHhccccccC-----CCCHHHHHHHHHhC---CCCEEEEEEcccc---CCCCCHHHHHHHHHHHHHc
Confidence             111100           01110     12789999988752   2256666665432   4478889999999999999


Q ss_pred             CCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHH--HHH--
Q 009517          303 GLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQ--IYK--  378 (533)
Q Consensus       303 ~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~--l~~--  378 (533)
                      |+++|+||+++++.+.+.    ..    ....++.||     +.+|+|.++  .|+++|++++   ++++++.  +..  
T Consensus       217 g~lLI~DEv~tG~~~~~~----g~----~~~~gv~PD-----i~t~gK~lg--gG~p~~av~~---~~~i~~~~~~~~~~  278 (431)
T PRK06209        217 GALFILDEMITGFRWHMR----GA----QKLYGIVPD-----LSCFGKALG--NGFAVSALAG---KREYMELGGLEHTD  278 (431)
T ss_pred             CCEEEEEcccccCCcCcc----hh----hHHhCCCcc-----eeeehhhhc--CCcccEEEEE---HHHHHhhhcccccC
Confidence            999999999998754321    11    111112577     578999994  4899999998   8888876  311  


Q ss_pred             ---h--hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCceEecCCceeE
Q 009517          379 ---V--ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNS----LEGITCNKAEGAMY  449 (533)
Q Consensus       379 ---~--~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~g~~~~~~~gg~~  449 (533)
                         .  .++++++++++++++.+.|+.           +++ +.+.++..++.+++++.|++    ++....++..|.+.
T Consensus       279 ~~~~~~~~~T~~~np~~~aaa~a~l~~-----------i~~-~~~~~~~~~~g~~l~~~L~~~~~~~~~~~~vr~~G~~~  346 (431)
T PRK06209        279 RERVFLLSTTHGAETHALAAAIATMAI-----------YRD-EDVIERLHEQGAKLAAGVNEAAAEHGLQDHVRVSGRPC  346 (431)
T ss_pred             CCCceeeccCCCCCHHHHHHHHHHHHH-----------Hhc-cCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeecceE
Confidence               1  235677888898888887742           111 23445555556666666554    32222244444433


Q ss_pred             EecccC-CCHHHHHHHHhcCCCCh---HHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHH
Q 009517          450 LFPRIQ-LPEKAIKAAEAEKTVPD---AFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       450 ~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~  525 (533)
                      .+.-+. .+.+         ....   ..+..+ +.++||++.            -++|+..+++++|++++++++++++
T Consensus       347 ~~~~~~~~~~~---------~~~~~~~~~~~~~-l~~~Gi~~p------------~l~is~~ht~~dId~~l~~l~~~l~  404 (431)
T PRK06209        347 CLTYSTLDGNG---------QPSQAFRTLFLQE-TIRRGVLMP------------SLVVSYAHGDADIERTIDAVHGALG  404 (431)
T ss_pred             EEEEecCCccc---------CCcHHHHHHHHHH-HHHCCcccc------------cccccccCCHHHHHHHHHHHHHHHH
Confidence            322111 1100         0011   123334 556899763            2477877999999999999999999


Q ss_pred             HHHH
Q 009517          526 NFMD  529 (533)
Q Consensus       526 ~~~~  529 (533)
                      ++.+
T Consensus       405 ~~~~  408 (431)
T PRK06209        405 VYRK  408 (431)
T ss_pred             HHHH
Confidence            8743

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.82  E-value=1.1e-17  Score=173.06  Aligned_cols=155  Identities=17%  Similarity=0.210  Sum_probs=121.7

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchH----HHHHHhCCeEEEEec
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS----ASIALHGGTLVPYYL  244 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~----~~~~~~g~~~~~v~~  244 (533)
                      ..+|.+.+|++.+        .+..+++++|++|+..++++++ .+||+|+++.++|.+..    ..+...|++++.++.
T Consensus        65 ~~~le~~lA~l~g--------~~~al~~~SG~~Ai~~al~all-~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~  135 (427)
T PRK05994         65 NAVLEERVAALEG--------GTAALAVASGHAAQFLVFHTLL-QPGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADA  135 (427)
T ss_pred             HHHHHHHHHHHhC--------CCcEEEEcCHHHHHHHHHHHHh-CCCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECC
Confidence            5678888888864        3457888999999999999988 89999999999998643    345678999888864


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcc
Q 009517          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (533)
Q Consensus       245 ~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~  324 (533)
                      .       |++.+++++++      ++++|++++|+||||.+++   +++|+++|+++|+++|+|++|..... . .+  
T Consensus       136 ~-------d~~~l~~ai~~------~tklV~vesp~NptG~v~d---l~~I~~la~~~gi~livD~a~a~~~~-~-~p--  195 (427)
T PRK05994        136 D-------DPASFERAITP------RTKAIFIESIANPGGTVTD---IAAIAEVAHRAGLPLIVDNTLASPYL-I-RP--  195 (427)
T ss_pred             C-------CHHHHHHhcCc------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCcccccc-C-Cc--
Confidence            2       78999999876      7999999999999999998   88999999999999999999974211 1 11  


Q ss_pred             cHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEE
Q 009517          325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV  365 (533)
Q Consensus       325 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~  365 (533)
                       +     ++   ..|   +++.|++|.++| +|-.+|.+++
T Consensus       196 -l-----~~---gaD---ivv~S~tK~lgg-~~~~~gG~v~  223 (427)
T PRK05994        196 -I-----EH---GAD---IVVHSLTKFLGG-HGNSMGGIIV  223 (427)
T ss_pred             -c-----cc---CCc---EEEEcCccccCC-CCCcEEEEEE
Confidence             1     11   244   889999999843 5555665554

>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.82  E-value=1.4e-18  Score=167.91  Aligned_cols=370  Identities=14%  Similarity=0.090  Sum_probs=226.3

Q ss_pred             chHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhc
Q 009517           75 EIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQ  154 (533)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~  154 (533)
                      .........+.+++++.+      +||+..|....                    ++...      .+++.+++.+++.+
T Consensus        40 v~~~~gkg~kl~D~~g~E------yiD~~ssw~~~--------------------~~Gha------npev~ral~~q~~k   87 (433)
T KOG1401|consen   40 VVIESGKGSKLFDPDGKE------YIDFTSSWAVT--------------------ILGHA------NPEVARALAEQAKK   87 (433)
T ss_pred             eeeecceeeeeecCCcce------eeeeccceecc--------------------ccCCC------CHHHHHHHHHHHhh
Confidence            345555566666667766      78877665332                    01111      58899999998887


Q ss_pred             CCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC-----CCC--eEEEcCCcCcc
Q 009517          155 IPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS-----END--GILCPIPQYPL  227 (533)
Q Consensus       155 ~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~-----~gd--~Vlv~~p~~~~  227 (533)
                      ... ....|.... ..++.+.+.+.+.+     -.+++|++.+++++|++.+++..++.     +-+  +++....+|++
T Consensus        88 ~~h-s~~~~~t~e-av~l~~~l~~~~~~-----~~~~rvff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG  160 (433)
T KOG1401|consen   88 LGH-SSNGYFTLE-AVELEEVLSAVLGK-----GSAERVFFCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHG  160 (433)
T ss_pred             hee-ccCccccHH-HHHHHHHHHhcccC-----CCccEEEEecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCC
Confidence            533 122232222 33444444444332     26889999999999999999988621     112  49999999998


Q ss_pred             hHHHHHH-hCCeEEEEecCCC-CCC----CCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCcc-CCCHHHHHHHHHHHH
Q 009517          228 YSASIAL-HGGTLVPYYLDEA-TGW----GLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ-VLAEENQRAIVDFCK  300 (533)
Q Consensus       228 ~~~~~~~-~g~~~~~v~~~~~-~~~----~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~-~~s~~~l~~i~~l~~  300 (533)
                      ....+.. .+......|.++- +++    .-|...+++.++.+.   ..+.+||++..+.-.|. .++++.+..|..+|+
T Consensus       161 ~tlgals~~~~s~y~~~~~p~~p~v~~~~ynd~t~l~k~~~~h~---~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~  237 (433)
T KOG1401|consen  161 RTLGALSVTGNSKYGLPFDPIAPDVVTAEYNDSTALEKLFESHK---GEIAAVIVEPIQGAGGIIPADPEFLIGLRKECD  237 (433)
T ss_pred             cchhHHHhhcccccCCCCCCCCCceeecccCCHHHHHHHHHhCC---CceEEEEEecccCCCCcccCCHHHHHHHHHHHh
Confidence            6654433 2333333332210 011    117899999998851   14788988887877786 667888999999999


Q ss_pred             HcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhh
Q 009517          301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA  380 (533)
Q Consensus       301 ~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~  380 (533)
                      ++|+++|+||++.+|.+.|.       ..+.++.+..||     |.++.|.+.  .|+++|+.++   ++++++.+....
T Consensus       238 ~~~vl~I~DEV~tG~gR~g~-------~~a~e~~~~~PD-----I~t~aK~L~--gGlPigA~~v---~~kV~~~i~~~~  300 (433)
T KOG1401|consen  238 DNGVLLIFDEVQTGLGRLGY-------GWAQEYFGVTPD-----ITTVAKPLG--GGLPIGATGV---RDKVAEMISPGD  300 (433)
T ss_pred             hcCceEEeehhhhCccccch-------HHHHHHhCcCCc-----ceeehhhcc--CCceeEEEee---hHHHHhhcCCCC
Confidence            99999999999999877664       223333334788     788999995  4899999998   999999886532


Q ss_pred             ----hccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ceEecCCceeEEecccC
Q 009517          381 ----SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEG-ITCNKAEGAMYLFPRIQ  455 (533)
Q Consensus       381 ----~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g-~~~~~~~gg~~~~~~~~  455 (533)
                          ..+++.+++++.++...|+...        --+.++++...=+..++.+.+.+.+.+. +.-....| +++...+.
T Consensus       301 ~l~hg~Tf~gnpLacsa~~~~l~~l~--------~~e~~k~vs~~~k~L~~~l~e~~~~~~~~i~g~~grg-l~ig~~~~  371 (433)
T KOG1401|consen  301 HLYHGGTFSGNPLACSAGIKVLDELK--------DPETLKNVSKIGKELRKLLDEYLKKTPNSICGGVGRG-LVIGFEFE  371 (433)
T ss_pred             ccccCcccCCChhhhhHHHHHHHHHc--------CHHHHHHHHHHHHHHHHHHHHHhccCCCceeeeeeeE-EEEEEEEe
Confidence                3789999999999998885322        1122344444444445555555555422 22222333 33332233


Q ss_pred             CCHH-HHHHHHhcCCCChHHHHHHH---HHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHHHHH
Q 009517          456 LPEK-AIKAAEAEKTVPDAFYCRRL---LNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFM  528 (533)
Q Consensus       456 ~~~~-~~~~~~~~~~~~~~~~~~~l---l~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~~  528 (533)
                      .|.. ..+....     .-++...+   +.+.||.++|       .   ++ ++...++|.++.+++++.+.++++.
T Consensus       372 ~p~~~~~d~~~~-----~~ll~~~~~~~~~~~gv~i~P-------~---~~-l~~~~~~E~i~~~l~i~~~~l~~~~  432 (433)
T KOG1401|consen  372 GPVYKFADAARE-----QGLLILTLGKGLLEEGVRIAP-------I---YL-LTVEHTPEVIQRLLTILEKVLSALN  432 (433)
T ss_pred             echhhhhhhhhh-----hhHHHHHHhcccccceEEEec-------c---cc-ccccCcHHHHHHHHHHHHHHHHHhc
Confidence            3332 1111100     11111111   1224555554       0   11 2223557788888888888877653

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=99.82  E-value=5.8e-17  Score=168.04  Aligned_cols=194  Identities=14%  Similarity=0.152  Sum_probs=142.2

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhc--------c
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI--------R  212 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~--------~  212 (533)
                      +.+.++++.+.+..    ....+++.  ..+|++++|++++        .+++++++|+++++..++.++.        .
T Consensus        43 ~~~~~~a~~~~~~~----~~~~~G~~--~~~fe~~lA~~~g--------~~~~v~~~sGt~al~~aL~al~~~~~~~~~~  108 (438)
T PRK15407         43 DAKELQNLVDASLD----FWLTTGRF--NDAFEKKLAEFLG--------VRYALLVNSGSSANLLAFSALTSPKLGDRAL  108 (438)
T ss_pred             CHHHHHHHHHHHHh----CcccCChh--HHHHHHHHHHHhC--------CCeEEEECCHHHHHHHHHHHHhhccccccCC
Confidence            56666666666654    13333332  5789999999975        3479999999999999998762        2


Q ss_pred             CCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHH
Q 009517          213 SENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQ  292 (533)
Q Consensus       213 ~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l  292 (533)
                      .+||+|+++.|+|..+...+...|++++.++++.. +|.+|++.+++++++      ++++|+++++   +|...   ++
T Consensus       109 ~pGd~VIv~~~t~~a~~~~v~~~G~~pv~vdvd~~-~~~id~~~le~~i~~------~tkaVi~~~~---~G~p~---dl  175 (438)
T PRK15407        109 KPGDEVITVAAGFPTTVNPIIQNGLVPVFVDVELP-TYNIDASLLEAAVSP------KTKAIMIAHT---LGNPF---DL  175 (438)
T ss_pred             CCCCEEEECCCCcHHHHHHHHHcCCEEEEEecCCC-cCCcCHHHHHHHcCc------CCeEEEEeCC---CCChh---hH
Confidence            68999999999999999999999999999998753 789999999999976      7999999875   34433   48


Q ss_pred             HHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCC--ccCCCCCCCeeEEEEEecCCH
Q 009517          293 RAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVS--KGYYGECGKRGGYMEVTGFSA  370 (533)
Q Consensus       293 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~S--K~~~gl~G~riG~v~~~~~~~  370 (533)
                      ++|.++|+++|++||+|++|+....-.+.+..+           ..|   +.+.||.  |.+.  +|- .|++++  .++
T Consensus       176 ~~I~~la~~~gi~vIeDaa~a~G~~~~g~~~G~-----------~gd---~~~fSf~~~k~~~--~ge-GG~l~t--~d~  236 (438)
T PRK15407        176 AAVKAFCDKHNLWLIEDNCDALGSTYDGRMTGT-----------FGD---IATLSFYPAHHIT--MGE-GGAVFT--NDP  236 (438)
T ss_pred             HHHHHHHHHCCCEEEEECccchhhhcCCeeeec-----------cCc---eEEEeCCCCCCcc--ccC-ceEEEE--CCH
Confidence            999999999999999999997533212111111           123   4455665  6663  354 588887  467


Q ss_pred             HHHHHHHHhh
Q 009517          371 EVREQIYKVA  380 (533)
Q Consensus       371 ~~~~~l~~~~  380 (533)
                      ++.+.+..+.
T Consensus       237 ~l~~~~~~~~  246 (438)
T PRK15407        237 LLKKIIESFR  246 (438)
T ss_pred             HHHHHHHHHH
Confidence            7776665543

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=99.81  E-value=6.3e-18  Score=174.90  Aligned_cols=356  Identities=12%  Similarity=0.041  Sum_probs=213.2

Q ss_pred             chHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHH-Hh
Q 009517           75 EIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQI-LD  153 (533)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~-~~  153 (533)
                      ..+.++++...++.||++      ++|+..|....                      ..+++    ++.+++++.++ +.
T Consensus        42 ~~~~~a~G~~l~D~dG~~------ylD~~sg~~~~----------------------~lGh~----~p~i~~Ai~~q~~~   89 (464)
T TIGR00699        42 ADYEKSRGNYLVDVDGNR------LLDLYSQISSI----------------------PIGYN----NPALLKAAQSPEMA   89 (464)
T ss_pred             eEEEecccCEEEeCCCCE------EEEccCCHhhh----------------------cCCCC----CHHHHHHHHHHHHH
Confidence            367788888888888887      77776665332                      22222    68999999874 33


Q ss_pred             c-CCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC-------------------
Q 009517          154 Q-IPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS-------------------  213 (533)
Q Consensus       154 ~-~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~-------------------  213 (533)
                      . ...  ...|... ...+|-+.+++.+.....  ...++|+++++|+||++.+++.++..                   
T Consensus        90 ~~l~~--~~~~~~~-~~~~la~~l~~~l~~~~p--~~~~~v~f~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~  164 (464)
T TIGR00699        90 TTLIN--RPALGNF-PSKDWAKILKEGILKVAP--KGQDQVWTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENES  164 (464)
T ss_pred             Hhhcc--cccCCcH-HHHHHHHHHHHhHHhhCC--CCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCcccccccccccc
Confidence            2 111  1112211 123444444443332221  23468999999999999999988410                   


Q ss_pred             ------CC---CeEEEcCCcCcchHHHHHHh-CCe-----------EEEEecCCC-CCCC-----------CCHHHHHHH
Q 009517          214 ------EN---DGILCPIPQYPLYSASIALH-GGT-----------LVPYYLDEA-TGWG-----------LETSEVKKQ  260 (533)
Q Consensus       214 ------~g---d~Vlv~~p~~~~~~~~~~~~-g~~-----------~~~v~~~~~-~~~~-----------ld~~~l~~~  260 (533)
                            +|   .+|+....+|++....+... |..           +..+|.... ..+.           -+++.+++.
T Consensus       165 ~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~  244 (464)
T TIGR00699       165 CMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHKLDIPAFDWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDL  244 (464)
T ss_pred             cccccccCCcCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCceecCCCCcccccccccccchhHHHHHHHHHHHH
Confidence                  11   27999999999976554433 211           011111100 0000           135566777


Q ss_pred             HHHHHhcCCCeeEEEEeCCCCCCccCC-CHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCC--
Q 009517          261 LEAAKAKGITVRALVVINPGNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE--  337 (533)
Q Consensus       261 i~~~~~~g~~~~~iil~~p~NPtG~~~-s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~--  337 (533)
                      +...   +.++.+||++..+...|.+. +++.+++|.++|++||+++|+||++++|..+|.  +..     .+..++.  
T Consensus       245 l~~~---~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~--~fa-----~e~~gv~~~  314 (464)
T TIGR00699       245 IKKW---HKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGK--FWA-----HEHWNLDDP  314 (464)
T ss_pred             HHhc---CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcc--hhH-----HHhcCCCCC
Confidence            7542   23688898887777778765 788899999999999999999999999866553  212     2222223  


Q ss_pred             CCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHH-hhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHH
Q 009517          338 KDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYK-VASVNLCSNISGQILASLVMSPPKVGDESYESYCAERD  416 (533)
Q Consensus       338 ~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~-~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~  416 (533)
                      ||     +.+|+|.+ |-.|+    ++.   .+ .+..... ....|+++++++++++.+.|+.           .+ .+
T Consensus       315 PD-----i~t~gK~l-g~gG~----~~~---~~-~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~-----------l~-~~  368 (464)
T TIGR00699       315 PD-----MVTFSKKF-QTAGY----FFH---DP-AFRPNKPYRQFNTWMGDPSRALILREIIQE-----------IK-RK  368 (464)
T ss_pred             CC-----EEEehhhh-ccCCc----ccc---ch-hccCCCCcccccCCCCCHHHHHHHHHHHHH-----------HH-hc
Confidence            77     57789988 31243    332   22 2211111 1236788999999999887741           11 13


Q ss_pred             HHHHHHHHHHHHHHHHHhcC----C-CceEec--CCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEc
Q 009517          417 GILSSLARRAKTLEDAFNSL----E-GITCNK--AEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVP  489 (533)
Q Consensus       417 ~~~~~~~~~~~~l~~~L~~~----~-g~~~~~--~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~p  489 (533)
                      .+.+..+++.+++.+.|+++    | .+..++  +.|.|+.+   .++...          ....++ +.+.++||++.+
T Consensus       369 ~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vRg~G~Glm~gi---e~~~~~----------~~~~i~-~~~~~~Gvl~~~  434 (464)
T TIGR00699       369 DLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRGKGRGTFIAW---DTPDEA----------KRDKLL-KKARNNGVNIGG  434 (464)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCCCceeeecccCeEEEEEE---ecCCHH----------HHHHHH-HHHHHCCcEEec
Confidence            45555566666666666554    3 244455  56555443   322110          012333 445568999975


Q ss_pred             CCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHH
Q 009517          490 GSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       490 g~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l  524 (533)
                      .       +.+.+||++.  +++++|++++++|.+++
T Consensus       435 ~-------g~~~ir~~Ppl~it~~eid~~~~~l~~~~  464 (464)
T TIGR00699       435 C-------GVKAIRLRPMLVFQKHHADIFLEIISKII  464 (464)
T ss_pred             C-------CCCeEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence            2       2348999995  89999999999998763

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]

Probab=99.80  E-value=8e-18  Score=165.80  Aligned_cols=190  Identities=20%  Similarity=0.297  Sum_probs=152.6

Q ss_pred             CHHHHHHHHHHHhcCCCCCccc-cC--CCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCC-
Q 009517          141 SADSIERAWQILDQIPGRATGA-YS--HSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND-  216 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~-Y~--~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd-  216 (533)
                      |+.|++++.+.+....++.... |.  ...+..+-|+.+|++++      .++++|++|+|+||++.++++.+.+..+| 
T Consensus        56 ~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklIn------Ad~~dIiFts~ATEs~Nlvl~~v~~~~~~~  129 (428)
T KOG1549|consen   56 DPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLIN------ADPSDIVFTSGATESNNLVLKGVARFFGDK  129 (428)
T ss_pred             CHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhC------CCCCcEEEeCCchHHHHHHHHHhhcccccc
Confidence            7999999988776543322222 33  34557889999999997      67778999999999999999998654566 


Q ss_pred             ---eEEEcCCcCcchHHHH---HHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHH
Q 009517          217 ---GILCPIPQYPLYSASI---ALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE  290 (533)
Q Consensus       217 ---~Vlv~~p~~~~~~~~~---~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~  290 (533)
                         .|++.+-.|++....+   +..|..++.+|+..  +...|.+.+++.|++      +|++|.+.+.+|.+|++.|  
T Consensus       130 ~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~~--~~~~d~~~~~~~i~~------~T~lv~I~~Vnn~~gv~~P--  199 (428)
T KOG1549|consen  130 TKKHIITLQTEHPCVLDSCRALQEEGLEVTYLPVED--SGLVDISKLREAIRS------KTRLVSIMHVNNEIGVLQP--  199 (428)
T ss_pred             ccceEEEecccCcchhHHHHHHHhcCeEEEEeccCc--cccccHHHHHHhcCC------CceEEEEEecccCcccccc--
Confidence               8998888888765544   55689999999984  447899999999998      8999999999999999999  


Q ss_pred             HHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEE
Q 009517          291 NQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV  365 (533)
Q Consensus       291 ~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~  365 (533)
                       +++|.++|+++++.+++|.+++-    |.. ..++    +++   ..|   ++..|.+|.+ |.+|  +|++.+
T Consensus       200 -v~EI~~icr~~~v~v~~DaAQav----G~i-~vDV----~el---n~D---~~s~s~HK~y-gp~~--iGaLYv  255 (428)
T KOG1549|consen  200 -VKEIVKICREEGVQVHVDAAQAV----GKI-PVDV----QEL---NAD---FLSISAHKIY-GPPG--IGALYV  255 (428)
T ss_pred             -HHHHHHHhCcCCcEEEeehhhhc----CCc-cccH----HHc---Cch---heeeeccccc-CCCc--ceEEEE
Confidence             99999999999999999999985    432 2343    333   345   6677889998 8888  898887

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.79  E-value=1.4e-16  Score=161.20  Aligned_cols=215  Identities=15%  Similarity=0.189  Sum_probs=156.0

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHH----HhCCeEEEEec
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA----LHGGTLVPYYL  244 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~----~~g~~~~~v~~  244 (533)
                      ...|.++++++.+        .+.++++++|+.|+..++..++ ++||.|+++...|.+-...++    ..|.++..++.
T Consensus        57 ~~~le~~la~Le~--------g~~a~~~~SGmaAi~~~l~~ll-~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~  127 (386)
T PF01053_consen   57 VRALEQRLAALEG--------GEDALLFSSGMAAISAALLALL-KPGDHIVASDDLYGGTYRLLEELLPRFGVEVTFVDP  127 (386)
T ss_dssp             HHHHHHHHHHHHT---------SEEEEESSHHHHHHHHHHHHS--TTBEEEEESSSSHHHHHHHHHCHHHTTSEEEEEST
T ss_pred             HHHHHHHHHHhhc--------ccceeeccchHHHHHHHHHhhc-ccCCceEecCCccCcchhhhhhhhcccCcEEEEeCc
Confidence            4567777776653        4679999999999999999998 799999999999998665544    46889888753


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcC-CEEEEccccccccccCCCCc
Q 009517          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEG-LVLLADEVYQENVYVPEKKF  323 (533)
Q Consensus       245 ~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~-~~lI~De~y~~~~~~~~~~~  323 (533)
                             -|++++++++++      ++++|+++.|.||+..+.+   +++|+++|+++| +++|+|..+....+-  .| 
T Consensus       128 -------~d~~~l~~~l~~------~t~~v~~EspsNP~l~v~D---l~~i~~~a~~~g~~~~vVDnT~atp~~~--~p-  188 (386)
T PF01053_consen  128 -------TDLEALEAALRP------NTKLVFLESPSNPTLEVPD---LEAIAKLAKEHGDILVVVDNTFATPYNQ--NP-  188 (386)
T ss_dssp             -------TSHHHHHHHHCT------TEEEEEEESSBTTTTB------HHHHHHHHHHTTT-EEEEECTTTHTTTC---G-
T ss_pred             -------hhHHHHHhhccc------cceEEEEEcCCCccccccc---HHHHHHHHHHhCCceEEeeccccceeee--cc-
Confidence                   379999999988      8999999999999988887   999999999998 999999999653221  11 


Q ss_pred             ccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCC-HHHHHHHHHhhh-ccccCChHHHHHHHHHcCCC
Q 009517          324 HSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFS-AEVREQIYKVAS-VNLCSNISGQILASLVMSPP  401 (533)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~-~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~  401 (533)
                        + .+       ..|   |++.|.+|.++|....=.|.+++  .+ .++.+.++.... .....++..+..+..-|+  
T Consensus       189 --L-~~-------GaD---ivv~S~TKyl~Ghsdv~~G~vv~--~~~~~~~~~l~~~~~~~G~~~~p~da~ll~rgl~--  251 (386)
T PF01053_consen  189 --L-EL-------GAD---IVVHSATKYLSGHSDVMGGAVVV--NGSSELYDRLREFRRLLGATLSPFDAWLLLRGLR--  251 (386)
T ss_dssp             --G-GG-------T-S---EEEEETTTTTTTSSSE-EEEEEE--SSHHHHHHHHHHHHHHHT-B--HHHHHHHHHHHT--
T ss_pred             --C-cC-------Cce---EEEeeccccccCCcceeeEEEEE--CchhhhhhhhcchhhhcCccchHHHHHHHhcCCC--
Confidence              1 11       234   88999999986544455788876  23 578887776554 445566666666666553  


Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Q 009517          402 KVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGIT  440 (533)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~  440 (533)
                                  .+..+.++..++...+.+.|++.|.+.
T Consensus       252 ------------Tl~~R~~~~~~nA~~lA~~L~~hp~V~  278 (386)
T PF01053_consen  252 ------------TLPLRMERQNENAEALAEFLEEHPKVK  278 (386)
T ss_dssp             ------------THHHHHHHHHHHHHHHHHHHHTSTTEE
T ss_pred             ------------cHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence                        244555667778888999999887654

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.79  E-value=1.4e-16  Score=164.53  Aligned_cols=155  Identities=19%  Similarity=0.215  Sum_probs=123.5

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHH----HHhCCeEEEEec
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI----ALHGGTLVPYYL  244 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~----~~~g~~~~~v~~  244 (533)
                      ..+|++.+|++.+        .+..++++++++|+.+++..++ .+||+|+++...|......+    ...|++++.++.
T Consensus        66 ~~~le~~lA~l~g--------~~~av~~sSGt~Al~~al~~ll-~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~  136 (433)
T PRK08134         66 VAVLEERVAALEG--------GVGAIATASGQAALHLAIATLM-GAGSHIVASSALYGGSHNLLHYTLRRFGIETTFVKP  136 (433)
T ss_pred             HHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHHh-CCCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEECC
Confidence            6788889998875        2347889999999999999887 79999999999998654443    447999988875


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcc
Q 009517          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (533)
Q Consensus       245 ~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~  324 (533)
                      +       |+++++++|++      ++++|++++|+||||.+.+   +++|+++|+++|+++|+|.++..-.. . .+  
T Consensus       137 ~-------d~~~l~~~i~~------~TklV~~e~~~np~g~v~D---i~~I~~la~~~gi~livD~t~a~~~~-~-~p--  196 (433)
T PRK08134        137 G-------DIDGWRAAIRP------NTRLLFGETLGNPGLEVLD---IPTVAAIAHEAGVPLLVDSTFTTPYL-L-RP--  196 (433)
T ss_pred             C-------CHHHHHHhcCC------CCeEEEEECCCcccCcccC---HHHHHHHHHHcCCEEEEECCCccccc-C-Cc--
Confidence            3       79999999987      8999999999999999999   99999999999999999999864222 1 11  


Q ss_pred             cHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEE
Q 009517          325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV  365 (533)
Q Consensus       325 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~  365 (533)
                       +     ++   ..|   +++.|.+|.+ |-+|-.+|.+++
T Consensus       197 -l-----~~---GaD---~vv~S~tK~l-~g~g~~~gG~v~  224 (433)
T PRK08134        197 -F-----EH---GAD---LVYHSATKFL-GGHGTAIGGVLV  224 (433)
T ss_pred             -h-----hc---CCC---EEEecccccc-CCCCCceEEEEE
Confidence             1     11   234   7899999988 546766666654

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=99.79  E-value=7.4e-17  Score=155.14  Aligned_cols=320  Identities=13%  Similarity=0.140  Sum_probs=203.4

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      .+++.+++.+.-..    ....|+...-...+.+.+++.+    |    .+.++++++||++..+++.+.+ +||+.|++
T Consensus        13 ~~~m~eam~~a~~~----~~~~YG~D~~~~~~e~~~ae~~----g----~~a~~Fv~sGT~aN~lal~~~~-~~~~~vi~   79 (342)
T COG2008          13 TPEMREALAAANAV----GDDVYGEDPTTNALEQRIAELF----G----KEAALFVPSGTQANQLALAAHC-QPGESVIC   79 (342)
T ss_pred             CHHHHHHHHhcccc----CCCCCCCCHHHHHHHHHHHHHh----C----CceEEEecCccHHHHHHHHHhc-CCCCeEEE
Confidence            57777777654421    2456766554555555555554    3    3789999999999999999999 89999998


Q ss_pred             cCCcCcchHH--HHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHH
Q 009517          221 PIPQYPLYSA--SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF  298 (533)
Q Consensus       221 ~~p~~~~~~~--~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l  298 (533)
                      ..-.|.....  ....++ .+.+++..+..+..+++++++..|+...-....+..+++.+.+|..|+++|.+++++|.++
T Consensus        80 ~~~aHi~~~E~Ga~~~~~-~~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i~~~  158 (342)
T COG2008          80 HETAHIYTDECGAPEFFG-GGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAISAV  158 (342)
T ss_pred             eccccceecccCcHHHHc-CCceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHHHHHHHHH
Confidence            8876654322  223332 2334455554566899999999988621023356777777777789999999999999999


Q ss_pred             HHHcCCEEEEcccc--ccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHH
Q 009517          299 CKKEGLVLLADEVY--QENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQI  376 (533)
Q Consensus       299 ~~~~~~~lI~De~y--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l  376 (533)
                      |+++|+.|..|.+-  ..+...+    ++...+..       .+. ++..++||+.    |+.+|.|++  .+.++++.+
T Consensus       159 ~k~~~l~LHmDGAR~~nA~valg----~~~~~~~~-------~~D-~v~~~~tK~g----~~~~gAiv~--gn~~~~~~a  220 (342)
T COG2008         159 CKEHGLPLHMDGARLANALVALG----VALKTIKS-------YVD-SVSFCLTKGG----GAPVGAIVF--GNRDFAKRA  220 (342)
T ss_pred             HHHhCCceeechHHHHHHHHHcC----CCHHHHHh-------hCC-EEEEecccCC----cceeeeEEE--cCHHHHHHH
Confidence            99999999999873  2222222    23323322       222 4455789975    688899888  599999888


Q ss_pred             HHhhhcc---ccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecc
Q 009517          377 YKVASVN---LCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPR  453 (533)
Q Consensus       377 ~~~~~~~---~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~  453 (533)
                      ...+...   +.-..+..+....+|++..        |    .....+-.++...|.+.|++.||+++..|.-...+|++
T Consensus       221 ~~~rK~~Ggl~~k~r~laA~~~~~l~~~~--------~----~~~~~Han~mA~~La~~~~~~~G~~~~~~~~tN~vf~~  288 (342)
T COG2008         221 RRWRKRAGGLMRKARFLAAQGLYALEDDV--------W----RLAADHANAMAARLAEGLEAKPGVKLAFPVETNMVFVR  288 (342)
T ss_pred             HHHHHHhcccHhhhhHHHHHHHHHHhccH--------H----HHHHHHHHHHHHHHHHhhhhcCCceeccCCcccEEEEE
Confidence            7665422   2223333334444454321        1    11222334457788999987789998876444456654


Q ss_pred             cCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHH
Q 009517          454 IQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l  524 (533)
                      ++  ....+          .......+.+.|+.+.++.        ..+|+..+  .+++++++++..++.++
T Consensus       289 l~--~~~i~----------~l~~~~~~~~~~~~~~~~~--------~~vRfvts~a~~~edv~~~~~~~~~~~  341 (342)
T COG2008         289 LP--ESAIE----------ALRLAGALFYRGVLIGAHG--------EIVRFVTSWATSEEDVDELVAAIKALL  341 (342)
T ss_pred             CC--hHHHH----------HHHhhchhheeeeeccCCC--------ceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence            44  21111          1111122334555555422        26788875  88899999998888764

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.79  E-value=3.6e-16  Score=155.28  Aligned_cols=316  Identities=16%  Similarity=0.201  Sum_probs=206.3

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      -.+.++++.+.+.+    .+...++.  ..+|.+++++|++        ....+.++++|.|+.++++++--.|||+|++
T Consensus        14 ~~~e~~~v~~vl~s----g~i~~G~~--v~~FE~~~ae~~G--------~k~ava~~sgT~AL~laL~al~ig~GDeVI~   79 (374)
T COG0399          14 GEEELAAVQEVLKS----GWLTGGPF--VRRFEQAFAEYLG--------VKYAVAVSSGTAALHLALLALAIGPGDEVIV   79 (374)
T ss_pred             chHHHHHHHHHHHc----CCeecChH--HHHHHHHHHHHhC--------CCeEEEecChHHHHHHHHHhcCCCCCCEEEe
Confidence            46778888888876    23334333  6789999999975        6678999999999999999663379999999


Q ss_pred             cCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHH
Q 009517          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (533)
Q Consensus       221 ~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~  300 (533)
                      ++-+|....+.+...|+++++++++++ +|.+|++.+|++|++      ++|+|+..|--   |...+   +++|.++|+
T Consensus        80 ps~TfvATan~i~~~Ga~PVFvDid~~-T~nid~~~ie~aIt~------~tKAIipVhl~---G~~~d---m~~i~~la~  146 (374)
T COG0399          80 PSFTFVATANAVLLVGAKPVFVDIDPD-TLNIDPDLIEAAITP------RTKAIIPVHLA---GQPCD---MDAIMALAK  146 (374)
T ss_pred             cCCchHHHHHHHHHcCCeEEEEecCCc-ccCCCHHHHHHHccc------CCeEEEEehhc---cCCCC---HHHHHHHHH
Confidence            999999999999999999999999975 889999999999998      79999988652   33344   899999999


Q ss_pred             HcCCEEEEcccccccc-ccCCCCcccHHHHHhhcCCCCCCceEEEEecC--CccCCCCCCCeeEEEEEecCCHHHHHHHH
Q 009517          301 KEGLVLLADEVYQENV-YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSV--SKGYYGECGKRGGYMEVTGFSAEVREQIY  377 (533)
Q Consensus       301 ~~~~~lI~De~y~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~--SK~~~gl~G~riG~v~~~~~~~~~~~~l~  377 (533)
                      +||++||+|.+++... |.|. ...+           ..+   +.+.||  .|.+ + +| -.|.++.  .++++.+.++
T Consensus       147 ~~~l~vIEDaAqa~Ga~y~gk-~vGt-----------~Gd---~~~fSF~~~K~i-t-tg-EGGav~t--nd~ela~k~~  206 (374)
T COG0399         147 RHGLPVIEDAAQAHGATYKGK-KVGS-----------FGD---IGAFSFHATKNL-T-TG-EGGAVVT--NDEELAEKAR  206 (374)
T ss_pred             HcCCeEEEEcchhccCeecCc-cccc-----------ccc---eEEEEecCCCCc-c-cc-CceEEEe--CCHHHHHHHH
Confidence            9999999999987532 3222 2111           122   445555  3888 4 56 7788877  4788888887


Q ss_pred             Hhhhcc---------------ccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEe
Q 009517          378 KVASVN---------------LCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCN  442 (533)
Q Consensus       378 ~~~~~~---------------~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~  442 (533)
                      .+....               ++.......|+....            .++.++++.++-++..+...+.|++++++...
T Consensus       207 ~lr~hG~~~~~~~~y~~~~~G~N~rm~~iqAAigl~------------QL~~l~~~~~~R~~~a~~Y~~~l~~~~~~~~p  274 (374)
T COG0399         207 SLRNHGLSRDAVFKYLHEELGYNYRLTEIQAAIGLA------------QLERLDEINERRREIAQIYAEALKGLPGITLP  274 (374)
T ss_pred             HHHHhCcCCCccccceeeecccccCHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Confidence            765311               122222222222211            12333444444444555677777777654433


Q ss_pred             c-CCce---eEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHcc----ceEEEcCCCC------C-CC----C-----C
Q 009517          443 K-AEGA---MYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNAT----GIVLVPGSGF------G-QV----P-----G  498 (533)
Q Consensus       443 ~-~~gg---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~----gV~v~pg~~f------~-~~----~-----g  498 (533)
                      . +.+.   ++++. +.++..        +.  ....+...|++.    +++..|-...      + ..    +     .
T Consensus       275 ~~~~~~~~~~~~~~-i~~~~~--------~~--~R~~l~~~L~~~gi~~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~~  343 (374)
T COG0399         275 PEPDGAVHAWHLYT-ILVDEE--------GI--SRDALMESLKEAGVGAVVYFRPLHLQPAYRQLGYFPEGDLPNAEDLS  343 (374)
T ss_pred             CCCCCceeeeeeeE-EEecCC--------CC--CHHHHHHHHHhCCCCceEEeeccccchhhhcccccccCCCchHHHHh
Confidence            2 2222   22221 111110        11  222244677888    4555663222      0 00    0     1


Q ss_pred             CceEEEEe--cCCcCcHHHHHHHHHHHHHH
Q 009517          499 TWHFRCTI--LPQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       499 ~~~iRis~--~~~~e~i~~~~~~l~~~l~~  526 (533)
                      ...+++-+  .++++++++.++.|++++..
T Consensus       344 ~r~l~LP~~p~l~~~~~~~V~~~l~~~~~~  373 (374)
T COG0399         344 ERILSLPLHPNLSEEDVDRVIEALKEVLGS  373 (374)
T ss_pred             hCeEEccCCCCCCHHHHHHHHHHHHHHhcc
Confidence            23566655  38889999999999887753

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=99.79  E-value=5.1e-16  Score=159.07  Aligned_cols=334  Identities=14%  Similarity=0.055  Sum_probs=211.8

Q ss_pred             CHHHHHHHHHHHhcCCCC---CccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCC---
Q 009517          141 SADSIERAWQILDQIPGR---ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSE---  214 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~---~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~---  214 (533)
                      .+.+.+++...+.+.+..   ....|.......++.....+...+.||  .+.-+|-.-+|+ .|...++.+++ +|   
T Consensus        62 s~~v~~a~~s~l~nkyaeg~pg~ryy~g~~~~d~ie~l~~~ra~~lf~--a~~anvqp~Sg~-~An~~v~~all-~~~~~  137 (493)
T PRK13580         62 SLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVDTVEWEAAEHAKELFG--AEHAYVQPHSGA-DANLVAFWAIL-AHKVE  137 (493)
T ss_pred             CHHHHHHhcccccccCcCCCCCccccCCCchHHHHHHHHHHHHHHHhC--CCcccccCCCcH-HHHHHHHHHHh-ccccc
Confidence            466666665555443221   123355556567777777777777777  444567666655 66777777777 55   


Q ss_pred             ----------------------------CCeEEEcCCcCcchHH---HHHHhC--CeEEEEecCCCCCCCCCHHHHHHHH
Q 009517          215 ----------------------------NDGILCPIPQYPLYSA---SIALHG--GTLVPYYLDEATGWGLETSEVKKQL  261 (533)
Q Consensus       215 ----------------------------gd~Vlv~~p~~~~~~~---~~~~~g--~~~~~v~~~~~~~~~ld~~~l~~~i  261 (533)
                                                  ||+|+..++...++..   .....|  ...+.++++.+ +..+|++++++.+
T Consensus       138 ~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~~~n~~~~~~~~~~y~vd~~-~g~iD~d~l~~~~  216 (493)
T PRK13580        138 SPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPNISGKMFHQRSYGVDPD-TGLLDYDEIAALA  216 (493)
T ss_pred             CcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCcccchhhheeeeEecccCcc-cCccCHHHHHHHH
Confidence                                        7999988776655422   112222  56667777744 4579999999999


Q ss_pred             HHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCce
Q 009517          262 EAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDIS  341 (533)
Q Consensus       262 ~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (533)
                      ++      .++.|++++.+|-++ ..+   +++|+++|+++|+++++|+++.-..+.++. ..      .+... .++ .
T Consensus       217 ~~------~~plvii~g~S~~~~-~~d---l~~i~eia~~~gA~L~VD~AH~~Gligg~~-~~------~~~~~-~~~-~  277 (493)
T PRK13580        217 RE------FKPLILVAGYSAYPR-RVN---FAKLREIADEVGAVLMVDMAHFAGLVAGKV-FT------GDEDP-VPH-A  277 (493)
T ss_pred             hh------cCCEEEEeCccccCC-CcC---HHHHHHHHHHcCCEEEEECchhhceecccc-ch------hhcCC-CCC-C
Confidence            88      677888888877644 666   999999999999999999999775554321 00      00000 011 1


Q ss_pred             EEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHH-HHHHHHH
Q 009517          342 LVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYC-AERDGIL  419 (533)
Q Consensus       342 vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~-~~~~~~~  419 (533)
                      .|+++|++|+|.   |-+.|++++   ++++++.+..... ..+++.+...+++..++.          +.. .+.+..+
T Consensus       278 D~vtgT~hKaL~---GP~GG~I~~---~~~l~~~L~~a~P~i~gg~l~p~iAA~avAl~----------e~~~~ef~~y~  341 (493)
T PRK13580        278 DIVTTTTHKTLR---GPRGGLVLA---KKEYADAVDKGCPLVLGGPLPHVMAAKAVALA----------EARTPEFQKYA  341 (493)
T ss_pred             cEEEeCChhhcc---CCCeEEEEe---cHHHHHHHhhCCCcccCCCccHHHHHHHHHHH----------HHhCccHHHHH
Confidence            277899999883   666799888   8888888854433 223333333333333331          111 1123456


Q ss_pred             HHHHHHHHHHHHHHhcCCCceEecC-CceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCC
Q 009517          420 SSLARRAKTLEDAFNSLEGITCNKA-EGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPG  498 (533)
Q Consensus       420 ~~~~~~~~~l~~~L~~~~g~~~~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g  498 (533)
                      +++.++.+.|++.|.+. |+.++.. ...-.+++.+....            .....+.+.|.+.||.+.+-.....+.+
T Consensus       342 ~~l~~Na~~La~~L~~~-G~~vv~ggTdshIV~V~lg~~~------------~~g~~a~~~L~e~GI~vn~i~~Ptvp~g  408 (493)
T PRK13580        342 QQVVDNARALAEGFLKR-GARLVTGGTDNHLVLIDVTSFG------------LTGRQAESALLDAGIVTNRNSIPSDPNG  408 (493)
T ss_pred             HHHHHHHHHHHHHHHhc-CCCccCCCCCCCEEEEEeCCHH------------HHHHHHHHHHHHCCeEEccccCCCCCCC
Confidence            77888899999999988 8887532 22234444443111            0122345678889999986443333333


Q ss_pred             ---CceEEEEec------CCcCcHHHHHHHHHHHHHHH
Q 009517          499 ---TWHFRCTIL------PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       499 ---~~~iRis~~------~~~e~i~~~~~~l~~~l~~~  527 (533)
                         ...|||+..      .++++|+++++.|.++++..
T Consensus       409 ~~~~srLRIg~~A~ttrg~teedi~~iad~l~~~l~~~  446 (493)
T PRK13580        409 AWYTSGIRLGTPALTTLGMGSDEMDEVAELIVKVLSNT  446 (493)
T ss_pred             CCCCceEEeccchhhhcCCCHHHHHHHHHHHHHHHHhh
Confidence               447999984      24789999999999888754

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=99.78  E-value=3.5e-17  Score=169.95  Aligned_cols=358  Identities=11%  Similarity=0.019  Sum_probs=202.2

Q ss_pred             cccchHHHHHHHHHHhh-cCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHH--HHH
Q 009517           72 VRGEIVSIAQRLQQELQ-TNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSI--ERA  148 (533)
Q Consensus        72 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~--~~~  148 (533)
                      |+.....++++...++. ||++      +||+..|....                      ..+++    ++.++  +++
T Consensus        18 p~~~~~~~a~G~~l~D~~dG~~------ylD~~~g~~~~----------------------~lGh~----~p~v~~~~ai   65 (431)
T TIGR03251        18 DLVLDLDRSRGSVLVDARDGRR------YLDMFSFFASM----------------------ALGMN----HPALVDDLAF   65 (431)
T ss_pred             ceeeEEEeccCCEEEECCCCCC------hhhcccChhhc----------------------CCCCC----ChhhhHHHHH
Confidence            44323467777777774 7888      56654443221                      11111    57788  788


Q ss_pred             HHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC-------C------C
Q 009517          149 WQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS-------E------N  215 (533)
Q Consensus       149 ~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~-------~------g  215 (533)
                      .+++.+.... ...+ ... ..+....+++.+.+..+ +...+.++++++|++|++.+++..+..       .      +
T Consensus        66 ~~q~~~~~~~-~~~~-~~~-~~~~~~~l~~~l~~~~~-~~~~~~v~f~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~  141 (431)
T TIGR03251        66 RARLGAAAVN-KPSN-SDV-YTVAMARFVDTFARVLG-DPALPHLFFIEGGALAVENALKTAFDWKSRHNQARGIPAALG  141 (431)
T ss_pred             HHHHHHhhhc-cccc-CCC-CCHHHHHHHHHHHHhcC-CCCcCEEEEeCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCC
Confidence            8887753100 0011 011 11222233333332211 123468999999999999999988511       1      3


Q ss_pred             CeEEEcCCcCcchHHHHHHh-CCe-EE--EEecC------CC-C--CC-----C-------CCHHHHHHHHHHHHhcCCC
Q 009517          216 DGILCPIPQYPLYSASIALH-GGT-LV--PYYLD------EA-T--GW-----G-------LETSEVKKQLEAAKAKGIT  270 (533)
Q Consensus       216 d~Vlv~~p~~~~~~~~~~~~-g~~-~~--~v~~~------~~-~--~~-----~-------ld~~~l~~~i~~~~~~g~~  270 (533)
                      .+|+....+|++....+... |.. ..  ..|..      .. .  .+     .       -+++.+++.+..   .+.+
T Consensus       142 ~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~  218 (431)
T TIGR03251       142 TQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLTFPLDAPNLDQVIALEEEALRQARAAFAE---RPHD  218 (431)
T ss_pred             ceEEEECCccCCcchhhhhccCCccccccCCCCCCCccCCCCcccCCccccccchhhHHHHHHHHHHHHHHHh---CCCc
Confidence            67999999999976544433 211 00  01110      00 0  00     0       023444455543   1347


Q ss_pred             eeEEEEeCCCCCCcc-CCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCC
Q 009517          271 VRALVVINPGNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVS  349 (533)
Q Consensus       271 ~~~iil~~p~NPtG~-~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~S  349 (533)
                      +.+||++..+.-.|. .++++.+++|.++|++||+++|+||++++|..+|.  .     +..+..++.||     +.+++
T Consensus       219 iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~--~-----~a~~~~gv~PD-----i~~~g  286 (431)
T TIGR03251       219 IACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGT--A-----WAYQQLGVQPD-----IVAFG  286 (431)
T ss_pred             EEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccch--H-----HHHHhcCCCCC-----EEEec
Confidence            888988877776776 46788899999999999999999999999766553  1     11222223677     44689


Q ss_pred             ccCCCCCCCeeEEEEEecCCHHHHHHHH---H---hhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHH
Q 009517          350 KGYYGECGKRGGYMEVTGFSAEVREQIY---K---VASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLA  423 (533)
Q Consensus       350 K~~~gl~G~riG~v~~~~~~~~~~~~l~---~---~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~  423 (533)
                      |.+ .  .  .|++.    ..++.+...   .   ....|++.++++++++.+.|+.           .++ +.+.++.+
T Consensus       287 K~~-~--~--~g~~~----~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~-----------l~~-~~l~~~~~  345 (431)
T TIGR03251       287 KKT-Q--V--CGIMA----GRRVDEVADNVFAVPSRLNSTWGGNLVDMVRATRILEI-----------IEE-ERLVDNAR  345 (431)
T ss_pred             ccC-c--c--ceEEe----cchHHHhhhhcccCccccCCCCCCCHHHHHHHHHHHHH-----------HHh-cCHHHHHH
Confidence            975 1  1  34443    333322111   1   1236678899999999888741           111 12334445


Q ss_pred             HHHHHHHHHHhc----CC-CceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCC
Q 009517          424 RRAKTLEDAFNS----LE-GITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPG  498 (533)
Q Consensus       424 ~~~~~l~~~L~~----~~-g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g  498 (533)
                      ++.+++.+.|++    .+ .+..+++.|.|.. +.+.  ...          ....++ ..|.++||++.|..       
T Consensus       346 ~~g~~l~~~L~~l~~~~~~~i~~vrg~G~~~~-i~~~--~~~----------~~~~~~-~~l~~~Gvl~~~~g-------  404 (431)
T TIGR03251       346 VQGAHLLARLHELAAEFPHLVSNPRGRGLMCA-FDLP--STA----------DRDEVI-RQLYREGVLLLGCG-------  404 (431)
T ss_pred             HHHHHHHHHHHHHHHhCccceecccccceeEE-EEeC--CHH----------HHHHHH-HHHHhCCeEEecCC-------
Confidence            555555555544    34 2334556655433 2332  110          112334 44557899998632       


Q ss_pred             CceEEEEec--CCcCcHHHHHHHHHH
Q 009517          499 TWHFRCTIL--PQEDKIPAIVTRLTD  522 (533)
Q Consensus       499 ~~~iRis~~--~~~e~i~~~~~~l~~  522 (533)
                      .+.+||++.  +++++|++++++|.+
T Consensus       405 ~~~lr~~P~l~~t~~eid~~l~~l~~  430 (431)
T TIGR03251       405 ERSIRFRPPLTVTREEIDAAIDAIRR  430 (431)
T ss_pred             CCeEEEECCccCCHHHHHHHHHHHHh
Confidence            236898885  889999999999876

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>PRK08114 cystathionine beta-lyase; Provisional

Probab=99.78  E-value=4.2e-16  Score=158.13  Aligned_cols=213  Identities=15%  Similarity=0.123  Sum_probs=159.2

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHH----HHhCCeEEEEec
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI----ALHGGTLVPYYL  244 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~----~~~g~~~~~v~~  244 (533)
                      ...|.+.+|++-+        .+..+++++|+.|+..++..++ ++||+|+++...|.+....+    +..|+++..++.
T Consensus        64 ~~~le~~la~LEg--------~~~a~~~~SGmaAi~~~~~~ll-~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~  134 (395)
T PRK08114         64 HFSLQEAMCELEG--------GAGCALYPCGAAAVANAILAFV-EQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWFDP  134 (395)
T ss_pred             HHHHHHHHHHHhC--------CCeEEEEhHHHHHHHHHHHHHc-CCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEECC
Confidence            4567777777632        4678888999999999999888 89999999998887765444    557999888763


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcC--CEEEEccccccccccCCCC
Q 009517          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEG--LVLLADEVYQENVYVPEKK  322 (533)
Q Consensus       245 ~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~--~~lI~De~y~~~~~~~~~~  322 (533)
                             .|.+.++++|++      ++++|++++|.||||.+.+   +++|+++|++++  +++++|.++.--..     
T Consensus       135 -------~d~~~l~~~l~~------~TrlV~~EtpsNp~~~v~D---I~~Ia~ia~~~g~g~~lvVDnT~a~p~~-----  193 (395)
T PRK08114        135 -------LIGADIAKLIQP------NTKVVFLESPGSITMEVHD---VPAIVAAVRSVNPDAVIMIDNTWAAGVL-----  193 (395)
T ss_pred             -------CCHHHHHHhcCC------CceEEEEECCCCCCCEeec---HHHHHHHHHHhCCCCEEEEECCCccccc-----
Confidence                   368899999976      7999999999999999998   999999999984  99999999964221     


Q ss_pred             cccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCC
Q 009517          323 FHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPP  401 (533)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~  401 (533)
                       ...    .++   ..|   |++.|.+|.++|....-.|.++.   +++..+.+..... ...+.++..++.+..-|+  
T Consensus       194 -~~p----l~~---GaD---ivv~S~tKyl~Ghsdv~~G~v~~---~~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~--  257 (395)
T PRK08114        194 -FKA----LDF---GID---ISIQAGTKYLVGHSDAMIGTAVA---NARCWEQLRENSYLMGQMVDADTAYMTSRGLR--  257 (395)
T ss_pred             -cCH----HHc---CCc---EEEEcCcccccCCCcceeEEEEc---CHHHHHHHHHHHHhccCCCCHHHHHHHHcCCC--
Confidence             111    111   234   88999999997654578887765   6776666654433 445667777776665553  


Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 009517          402 KVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGI  439 (533)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~  439 (533)
                                  .+..+.++..++...+.+.|++.|.+
T Consensus       258 ------------TL~lR~~~~~~na~~va~~L~~hp~V  283 (395)
T PRK08114        258 ------------TLGVRLRQHEESSLKVAEWLAEHPEV  283 (395)
T ss_pred             ------------cHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence                        23445566677788899999887554

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=99.78  E-value=1.8e-16  Score=162.43  Aligned_cols=311  Identities=12%  Similarity=0.098  Sum_probs=198.3

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH-HHHHHHHHHhcc-C-CCCeEEEcCCcCcchHHHHHHhCCeEEEEec-
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGAS-PAVHMMMQLLIR-S-ENDGILCPIPQYPLYSASIALHGGTLVPYYL-  244 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~-~al~~~~~~l~~-~-~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~-  244 (533)
                      ...+.+.+.+.+.+..|.. +.+..++++|++ .++.+++.++.. . +||+|+++.-+|.....++..+|++++.++. 
T Consensus       103 ~~~l~~~~e~~~~~~~G~~-~~~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~kAi~~~G~~pv~Vd~~  181 (444)
T TIGR03531       103 LYKLTNKLVKDFLKLLGLR-SIKSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIKAISTAGFEPRVIETV  181 (444)
T ss_pred             HHHHHHHHHHHHHHHcCCC-CCCEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHHHHHHHcCCeEEEeeee
Confidence            5566666767666666633 123588888888 688888777641 1 5899999999999999999999999999996 


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcc
Q 009517          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (533)
Q Consensus       245 ~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~  324 (533)
                      .++++|.+|+++|+++|++.   +++..++++.+|+  |+.....+++++|+++|++||+++|+|++|.....       
T Consensus       182 ~d~~~~~iD~e~Le~aIt~~---~~kai~~Vv~Tp~--t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~-------  249 (444)
T TIGR03531       182 LDGDELTTDVEDIERAIEEI---GPDNILCVLSTTS--CFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSN-------  249 (444)
T ss_pred             ecCcCCCcCHHHHHHHHHhc---cCCCEEEEEEcCC--cCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcCh-------
Confidence            24458999999999999862   1134566666665  55555567799999999999999999999985211       


Q ss_pred             cHHHHH-hhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhccccCChHHHHHHHHHcCCCCC
Q 009517          325 SFKKVS-RSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKV  403 (533)
Q Consensus       325 ~~~~~~-~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~~L~~~~~  403 (533)
                      .+..+. ..+   ..+.-.+++.|++|++ .+||+  |+++.. .++++++.+...... ...+...+.+...++..+  
T Consensus       250 ~~~~~~~~g~---~~Grad~vv~s~hK~l-~~pg~--Gg~I~~-~d~el~~~i~~~y~g-~~~~s~~~~~~~~ll~~G--  319 (444)
T TIGR03531       250 KYMELINKAI---KVGRVDAVVSSTDKNF-MVPVG--GAIIYS-FDENFIQEISKSYPG-RASASPSLDVLITLLSLG--  319 (444)
T ss_pred             hhhhhhhccc---cccCCCeEEEeCccCC-CCCCC--EEEEEE-CCHHHHHHHHHhccC-CCCChHHHHHHHHHHHhC--
Confidence            111111 111   0100136688999998 67787  555432 478888888765432 223455666666666432  


Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCceEecC-C--ceeEEecccCCCHHHHHHHHhcCCCChHHHHH
Q 009517          404 GDESYESYCAERDGILSSLARRAKTLEDAFNSL---EGITCNKA-E--GAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCR  477 (533)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~g~~~~~~-~--gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (533)
                              .+.++++.+++.++++++.+.|+++   -|..+... .  ..+-+.  ++...           ..+...+-
T Consensus       320 --------~~g~~~li~~~~~~a~~l~~~L~~l~~~~~~~~~~~~~n~is~~~~--~~~~~-----------~~~~~~~g  378 (444)
T TIGR03531       320 --------SKGYLELLKERKEMYKYLKELLQKLAERHGERLLDTPENPISSAMT--LSTLK-----------GKDPTMLG  378 (444)
T ss_pred             --------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcEeecCCCCceeEEEe--ccccc-----------ccCHHHHH
Confidence                    2456777788888888888888775   35555433 2  222222  22100           01112223


Q ss_pred             HHHHccceE----EEcCC-------CC---CCC-CC--CceEEEEe--cCCcCcHHHHHHHHHHH
Q 009517          478 RLLNATGIV----LVPGS-------GF---GQV-PG--TWHFRCTI--LPQEDKIPAIVTRLTDF  523 (533)
Q Consensus       478 ~ll~~~gV~----v~pg~-------~f---~~~-~g--~~~iRis~--~~~~e~i~~~~~~l~~~  523 (533)
                      .+|-.++|.    |.||.       .|   +.. +.  ..|+-++.  +.+.+||+.++++|+++
T Consensus       379 ~~l~~~~v~g~r~v~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~  443 (444)
T TIGR03531       379 SMLYSRRVTGPRVVTNGDSKTVGGCEFKGYGSHTSNYPCPYITAAAAIGMTKEDVDTFVSRLEKS  443 (444)
T ss_pred             HHHHhCCCCCceeecCCCceEECCEEeecccccccCCCchhHHHHHHhCCcHHHHHHHHHHHhhc
Confidence            444445552    45665       22   211 10  11554554  38899999999999875

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=99.78  E-value=6.1e-16  Score=160.03  Aligned_cols=324  Identities=13%  Similarity=0.068  Sum_probs=192.1

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCC----CcccHHHHH----HHHHHHHhhcCCCCCCCCEE-EcCChHHHHHHHHHHhc
Q 009517          141 SADSIERAWQILDQIPGRATGAYSH----SQGIKGLRD----TIAAGIEARDGFPADPNDIF-LTDGASPAVHMMMQLLI  211 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~----~~G~~~lr~----aia~~~~~~~g~~~~~~~i~-~t~G~~~al~~~~~~l~  211 (533)
                      ++.+++++...+.+..+. ...|..    ..-..+|.+    .+++++    |    .+..+ .+++|+.|+..++.+++
T Consensus        41 ~p~v~~a~~~~~~~~~~~-g~~gsr~~~G~~~~~~lE~~~~~~la~l~----g----~~~alv~~~SG~~A~~~~l~al~  111 (416)
T PRK13034         41 SPAVMEAQGSVLTNKYAE-GYPGKRYYGGCEFVDEVEALAIERAKQLF----G----CDYANVQPHSGSQANGAVYLALL  111 (416)
T ss_pred             CHHHHHHhcchhhcCCCC-CCCCCcccCCChHHHHHHHHHHHHHHHHh----C----CCceEEecCCcHHHHHHHHHHhc
Confidence            688888888775322210 111111    122455665    556654    3    34564 46788999999999998


Q ss_pred             cCCCCeEEEcCCcCcch-HHHHHH--hCCeE--EEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccC
Q 009517          212 RSENDGILCPIPQYPLY-SASIAL--HGGTL--VPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV  286 (533)
Q Consensus       212 ~~~gd~Vlv~~p~~~~~-~~~~~~--~g~~~--~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~  286 (533)
                       ++||+|+++..+|.+. ...+..  .+...  ..+..+.. ++.+|++++++.++..     ++++|++.++.+  |..
T Consensus       112 -~~GD~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~d~~~le~~l~~~-----~~klVi~~~~~~--g~~  182 (416)
T PRK13034        112 -KPGDTILGMSLSHGGHLTHGAKVSLSGKWYNAVQYGVDRL-TGLIDYDEVEELAKEH-----KPKLIIAGFSAY--PRE  182 (416)
T ss_pred             -CCCCEEEEcCccceeeeecCCcceeccceeeeEEcccccc-cCCcCHHHHHHHHhhc-----CCeEEEECCCcc--ccc
Confidence             8999999999988762 211111  12222  23433332 4568999999998653     578887766553  555


Q ss_pred             CCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEe
Q 009517          287 LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVT  366 (533)
Q Consensus       287 ~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~  366 (533)
                      .+   +.+|.++|++||+++|+|+++....+..+....+       +    .+ -.+++.|++|++.   |-..|++++ 
T Consensus       183 ~d---l~~l~~la~~~g~~livD~Aha~G~~~~g~~~~~-------~----~~-~Di~~~s~~K~l~---g~~GG~v~~-  243 (416)
T PRK13034        183 LD---FARFREIADEVGALLMVDMAHIAGLVAAGEHPNP-------F----PH-AHVVTTTTHKTLR---GPRGGMILT-  243 (416)
T ss_pred             cC---HHHHHHHHHHcCCEEEEeCcccccCcccCCCCCC-------C----CC-ceEEEEeCcccCC---CCCCeEEEE-
Confidence            55   8888999999999999999987544432211100       0    11 2377999999884   333577766 


Q ss_pred             cCCHHHHHHHHHhhhcc--ccCChHHHHHHHHHcCCCCCCChhHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCceEec
Q 009517          367 GFSAEVREQIYKVASVN--LCSNISGQILASLVMSPPKVGDESYESYC-AERDGILSSLARRAKTLEDAFNSLEGITCNK  443 (533)
Q Consensus       367 ~~~~~~~~~l~~~~~~~--~~~~~~~q~a~~~~L~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~  443 (533)
                       .++++...+......+  .++.+...+++...+.          +.. .+..+.++++.++.++|++.|.++ |+.+..
T Consensus       244 -~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~al~----------~~~~~~~~~~~~~l~~~a~~l~~~L~~~-G~~~~~  311 (416)
T PRK13034        244 -NDEEIAKKINSAVFPGLQGGPLMHVIAAKAVAFG----------EALQPEFKTYAKQVIANAQALAEVLKER-GYDLVS  311 (416)
T ss_pred             -CcHHHHHHHHhhcCCcccCCccHHHHHHHHHHHH----------HHhChhHHHHHHHHHHHHHHHHHHHHHc-CCEecc
Confidence             2445555554432221  2233333333222221          111 112344677888999999999988 888764


Q ss_pred             C--CceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCC---CCCCCCCceEEEEec------CCcCc
Q 009517          444 A--EGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSG---FGQVPGTWHFRCTIL------PQEDK  512 (533)
Q Consensus       444 ~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~---f~~~~g~~~iRis~~------~~~e~  512 (533)
                      +  +.. ..++.+..+.            .....+.+.|+++||.+.+-..   ...+.....+|+++.      .++++
T Consensus       312 ~~~~t~-i~~v~~~~~~------------~~~~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~~~d  378 (416)
T PRK13034        312 GGTDNH-LLLVDLRPKG------------LSGKDAEQALERAGITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFGEAE  378 (416)
T ss_pred             CCCCCc-EEEEEcCCCC------------CCHHHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCCCHHH
Confidence            2  322 2333333211            1223344667888999975110   111112337999963      45789


Q ss_pred             HHHHHHHHHHHHHH
Q 009517          513 IPAIVTRLTDFHKN  526 (533)
Q Consensus       513 i~~~~~~l~~~l~~  526 (533)
                      |+++++.|++++.+
T Consensus       379 i~~l~~~l~~~~~~  392 (416)
T PRK13034        379 FREIANWILDVLDD  392 (416)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999988763

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.78  E-value=3.4e-16  Score=161.55  Aligned_cols=216  Identities=13%  Similarity=0.083  Sum_probs=148.1

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHH----HHHhCCeEEEEec
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS----IALHGGTLVPYYL  244 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~----~~~~g~~~~~v~~  244 (533)
                      ...|.+.+|++.+        .+..+++++|+.|+..++..++ .+||+|+++...|.+....    +...|++++.++ 
T Consensus        71 ~~~Le~~lA~l~g--------~~~av~~sSG~aAi~~al~all-~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~vd-  140 (436)
T PRK07812         71 QDVVEQRIAALEG--------GVAALLLASGQAAETFAILNLA-GAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVE-  140 (436)
T ss_pred             HHHHHHHHHHHhC--------CCeEEEEccHHHHHHHHHHHHh-CCCCEEEEeCCcchHHHHHHHHHhhcCeEEEEEEC-
Confidence            4678888887764        3457888888999999999888 7999999999888775433    334677777774 


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcc
Q 009517          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (533)
Q Consensus       245 ~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~  324 (533)
                      +.     .|++.+++++++      ++++|++++|+||+|.+.+   +++|+++|+++|+++|+|+++..-.. .    .
T Consensus       141 d~-----~d~e~l~~ai~~------~tklV~ie~~sNp~G~v~D---l~~I~~la~~~gi~liVD~t~a~~~~-~----~  201 (436)
T PRK07812        141 DP-----DDLDAWRAAVRP------NTKAFFAETISNPQIDVLD---IPGVAEVAHEAGVPLIVDNTIATPYL-I----R  201 (436)
T ss_pred             CC-----CCHHHHHHhCCC------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccc-C----C
Confidence            21     289999998876      7999999999999999999   89999999999999999998864211 1    1


Q ss_pred             cHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCC----------------------------HHHHHHH
Q 009517          325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFS----------------------------AEVREQI  376 (533)
Q Consensus       325 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~----------------------------~~~~~~l  376 (533)
                      +   +  .+   ..|   +++.|++|.++| .|--+|.+++....                            ++++..+
T Consensus       202 p---l--~~---GaD---ivv~S~tK~lgg-~G~~i~G~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (436)
T PRK07812        202 P---L--EH---GAD---IVVHSATKYLGG-HGTAIAGVIVDGGTFDWTQGRFPGFTTPDPSYHGVVFAELGPPAYALKA  269 (436)
T ss_pred             c---h--hc---CCC---EEEEecccccCC-CCCeEEEEEEcCCccccccccccccccCCcccccchhhhcchhHHHHHH
Confidence            1   1  11   234   778999999944 55556666652110                            0111111


Q ss_pred             H--HhhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 009517          377 Y--KVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGI  439 (533)
Q Consensus       377 ~--~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~  439 (533)
                      .  .........++..++.+..-|+              .+....++..++...+.+.|++.|++
T Consensus       270 ~~~~~~~~G~~l~p~~a~l~~rgl~--------------tL~~R~~~~~~nA~~la~~L~~~p~v  320 (436)
T PRK07812        270 RVQLLRDLGSAISPFNAFLIAQGLE--------------TLSLRIERHVANAQRVAEFLEARDEV  320 (436)
T ss_pred             HHHHHHhcCCCCCHHHHHHHhcCcC--------------cHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            1  1112445556665555544443              24445556677788899999887665

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.77  E-value=4.6e-16  Score=170.11  Aligned_cols=338  Identities=14%  Similarity=0.106  Sum_probs=207.0

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc-C------
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-S------  213 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~------  213 (533)
                      ++++++++.+++.+...     +....-..+-...+|+.+.+..+ .-..++|+++++|++|++.+++..+. .      
T Consensus       384 ~p~I~~Ai~~Qa~rl~h-----v~~~~~~hepa~~LAe~L~~~~~-~~~l~rVffs~sGSeAvE~AlKmA~r~y~~~~G~  457 (817)
T PLN02974        384 QPELARAVAYAAGRYGH-----VMFPENVHEPALRAAELLLGGPG-KGWASRVFFSDNGSTAIEVALKMAFRKFIVDHGF  457 (817)
T ss_pred             CHHHHHHHHHHHhhCCc-----cccCccCCHHHHHHHHHHHhccC-CCCCCEEEECCchHHHHHHHHHHHHHHHHHhcCC
Confidence            68999999999987432     11111123444556666654211 01136899999999999999998741 0      


Q ss_pred             -------------CCCeEEEcCCcCcchHHHHHHhCCe---------E------EEE--ecC---C-------CCC----
Q 009517          214 -------------ENDGILCPIPQYPLYSASIALHGGT---------L------VPY--YLD---E-------ATG----  249 (533)
Q Consensus       214 -------------~gd~Vlv~~p~~~~~~~~~~~~g~~---------~------~~v--~~~---~-------~~~----  249 (533)
                                   ...+|+....+|++-...+...+..         .      ..+  |..   .       ...    
T Consensus       458 ~~~~~~~~~~~~~~r~kIIa~~gsYHG~T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~~~~~~~~~~~~p~~~~~~  537 (817)
T PLN02974        458 LENSGNEKRGGDLIELKVLALDGSYHGDTLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTVGMRNGRWNISLPEGFSSG  537 (817)
T ss_pred             CcccccccccccCCCCEEEEECCCcCCCCHHHHhhCCchhhhcccccccccCCCcccCCCccccccccccccCCcccccc
Confidence                         1246999999999865544443321         0      001  100   0       000    


Q ss_pred             -------CC-----CC------------HHHHHHHHHHHH--hcCCCeeEEEEeCC-CCCCccC-CCHHHHHHHHHHHHH
Q 009517          250 -------WG-----LE------------TSEVKKQLEAAK--AKGITVRALVVINP-GNPTGQV-LAEENQRAIVDFCKK  301 (533)
Q Consensus       250 -------~~-----ld------------~~~l~~~i~~~~--~~g~~~~~iil~~p-~NPtG~~-~s~~~l~~i~~l~~~  301 (533)
                             |.     .|            .+.+++.|....  ..+.++.+||++.. ++-.|++ ++++.+++|.++|++
T Consensus       538 ~~~~~~~~~~~~~~f~~~r~~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~  617 (817)
T PLN02974        538 LEGEETTWESRDEVFDKTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRS  617 (817)
T ss_pred             ccccccccccccccccccccchhhhHHHHHHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHH
Confidence                   00     00            144566664311  12346888888874 6777875 578889999999999


Q ss_pred             cCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCC-CeeEEEEEecCCHHHHHHHHH--
Q 009517          302 EGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFSAEVREQIYK--  378 (533)
Q Consensus       302 ~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G-~riG~v~~~~~~~~~~~~l~~--  378 (533)
                      ||+++|+||++++|...|.  +.     ..+..++.||     |.+++|.+.  .| +++|.+++   .+++.+.+..  
T Consensus       618 ~gilLI~DEV~TGfGRtG~--~f-----a~e~~gv~PD-----Ii~~gKgLt--gG~~Plaa~l~---~~~I~~~f~~~~  680 (817)
T PLN02974        618 RKIPVIFDEVFTGLWRLGV--ES-----AWELLGCKPD-----IACYAKLLT--GGLVPLAATLA---TEEVFEAFRGPS  680 (817)
T ss_pred             hCCEEEEeecccCCCcccc--hh-----hHHhcCCCCC-----EEeeccccc--CCCCccEEEEE---cHHHHHhhcccc
Confidence            9999999999999877764  22     2233344788     667999995  48 69999998   9999988852  


Q ss_pred             ----h-hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHH----HHHHHhcCCCceEecCCceeE
Q 009517          379 ----V-ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKT----LEDAFNSLEGITCNKAEGAMY  449 (533)
Q Consensus       379 ----~-~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~L~~~~g~~~~~~~gg~~  449 (533)
                          + +..|++.++++++++.+.|+.-+. ...+       +.+.+.-.+..++    +.+.|.+.|.+.-++..|.|.
T Consensus       681 ~~~~~~hg~Ty~gnpl~cAaala~L~~~~~-~~~~-------~~l~~~~~~l~~~l~~~l~~~l~~~p~V~~VRg~Gl~~  752 (817)
T PLN02974        681 KLDALLHGHSYTAHPMGCAAAAKALQWYKD-PSTN-------PNLIPPGSRLRELWDEELVRAISSLPNVERVVSLGTVL  752 (817)
T ss_pred             ccCCcccCCCCCcCHHHHHHHHHHHHHHHc-ccHH-------HHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEEeeeeEE
Confidence                1 347899999999999888752110 0011       1222222223333    333445556677788887665


Q ss_pred             EecccCCCHHHHHHHHhcCCC--ChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHH
Q 009517          450 LFPRIQLPEKAIKAAEAEKTV--PDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l  524 (533)
                      .+ .+..+..      ..+..  ....+...++.++||+++|.   +     +.||+.+.  ++++++++++++|.+.+
T Consensus       753 ~i-el~~~~~------~~~~~~~~a~~v~~~~~~~~Gl~~r~~---G-----nvi~l~pP~~i~~e~l~~~~~~l~~~~  816 (817)
T PLN02974        753 AL-ELDAEGS------GSGYSSLYARSVVRRLRREDGIYARPL---G-----NVVYLMCGPTTSPETCTRLLRKVYRRL  816 (817)
T ss_pred             EE-EEecCCc------ccccchHHHHHHHHHHHHhCCEEEEec---C-----CEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            53 2321110      00110  11233334442799999972   1     27887663  88899999999998765

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=99.77  E-value=1e-15  Score=160.37  Aligned_cols=326  Identities=14%  Similarity=0.094  Sum_probs=197.7

Q ss_pred             CHHHHHHHHHHHhcCC--CCCccc-cCCCcccHH----HHHHHHHHHHhhcCCCCCCCCEEEc---CChHHHHHHHHHHh
Q 009517          141 SADSIERAWQILDQIP--GRATGA-YSHSQGIKG----LRDTIAAGIEARDGFPADPNDIFLT---DGASPAVHMMMQLL  210 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~--~~~~~~-Y~~~~G~~~----lr~aia~~~~~~~g~~~~~~~i~~t---~G~~~al~~~~~~l  210 (533)
                      ++.+++++...+.+..  +..... |....-...    .|+.+++++    |  .+++++.++   +|+++++..++..+
T Consensus        47 s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf----~--a~~~~~~~~~~~~sgt~an~~v~~al  120 (452)
T PTZ00094         47 SRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALEAF----G--LDPEEWGVNVQPYSGSPANFAVYTAL  120 (452)
T ss_pred             CHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHHHh----C--CCcccceeecCCCchHHHHHHHHHHh
Confidence            6888888877776532  111111 111111222    233455554    4  456667666   78999999999999


Q ss_pred             ccCCCCeEEEcCCcCcchHHHHHH----------hCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCC
Q 009517          211 IRSENDGILCPIPQYPLYSASIAL----------HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPG  280 (533)
Q Consensus       211 ~~~~gd~Vlv~~p~~~~~~~~~~~----------~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~  280 (533)
                      . ++||+|++....+..+...+..          .+.++..++.+.  +..+|+++|++.++..     +++.|++.  +
T Consensus       121 ~-~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~--~g~id~~~L~~~l~~~-----~~~lvi~~--~  190 (452)
T PTZ00094        121 L-QPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNE--KGLIDYDKLEELAKAF-----RPKLIIAG--A  190 (452)
T ss_pred             c-CCCCEEEecccccCCcccccccccccccccceeeeeeeecccCC--CCCcCHHHHHHHHHHh-----CCCEEEEe--C
Confidence            7 7999999988777665433211          112334455554  3578999999999764     56666653  3


Q ss_pred             CCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCee
Q 009517          281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRG  360 (533)
Q Consensus       281 NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~ri  360 (533)
                      +.+|...+   +++|.++|+++|+++++|+++.......+....++    .     ..|   +++.|.+|++.   |-+.
T Consensus       191 s~~g~~~d---i~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~----~-----~~D---~l~~S~hK~l~---GP~G  252 (452)
T PTZ00094        191 SAYPRDID---YKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPF----P-----YAD---VVTTTTHKSLR---GPRS  252 (452)
T ss_pred             CCCCCccC---HHHHHHHHHHcCCEEEEeccchhccccCCCCCCCC----C-----CCc---EEEcCCccCCC---CCCc
Confidence            34899888   88888999999999999999976444221100010    0     123   77899999884   4445


Q ss_pred             EEEEEecCCHHHHHHHHHhh-h-----ccccCChHHHHHHHHHcCCCCCCChhHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 009517          361 GYMEVTGFSAEVREQIYKVA-S-----VNLCSNISGQILASLVMSPPKVGDESYESY-CAERDGILSSLARRAKTLEDAF  433 (533)
Q Consensus       361 G~v~~~~~~~~~~~~l~~~~-~-----~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L  433 (533)
                      |++.+   ++++.+.+.... .     ...+++....+++..+++          .. ....+...+++.++++++.+.|
T Consensus       253 g~l~~---~~~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~----------~~~~~~~~~~~~~i~~l~~~l~~~L  319 (452)
T PTZ00094        253 GLIFY---RKKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLK----------EVQSPEWKEYAKQVLKNAKALAAAL  319 (452)
T ss_pred             eEEEE---ecccchHHHHhhccccCCCCCCCchHHHHHHHHHHHH----------HHhChhHHHHHHHHHHHHHHHHHHH
Confidence            77776   554443332211 1     112344444445555542          11 1234566778888899999999


Q ss_pred             hcCCCceEecCCc-eeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEE-EcCCCCCC-CCCCceEEEEec--C
Q 009517          434 NSLEGITCNKAEG-AMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVL-VPGSGFGQ-VPGTWHFRCTIL--P  508 (533)
Q Consensus       434 ~~~~g~~~~~~~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v-~pg~~f~~-~~g~~~iRis~~--~  508 (533)
                      .+. |+.+..+.. ....++.+..+.          .  +...+..+|+++||.+ .+|..+.. ....+.||+|+.  .
T Consensus       320 ~~~-g~~v~~~~~~~~~~~v~~~~~~----------~--~~~~~~~~L~~~gI~vs~~~~p~~~~~~~~~~vRis~~~~t  386 (452)
T PTZ00094        320 EKR-GYDLVTGGTDNHLVLVDLRPFG----------I--TGSKMEKLLDAVNISVNKNTIPGDKSALNPSGVRLGTPALT  386 (452)
T ss_pred             HhC-CcEEecCCCCCceEeecCCcCC----------C--CHHHHHHHHHHCCcEEecccCCCCCcCCCCCeEEECCHHHH
Confidence            886 887764321 112333333221          1  2223456778889999 44443321 111248999994  3


Q ss_pred             C----cCcHHHHHHHHHHHHHH
Q 009517          509 Q----EDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       509 ~----~e~i~~~~~~l~~~l~~  526 (533)
                      +    +++|+++++.|.++++.
T Consensus       387 t~g~~~~di~~l~~~l~~~~~~  408 (452)
T PTZ00094        387 TRGAKEKDFKFVADFLDRAVKL  408 (452)
T ss_pred             hCCCCHHHHHHHHHHHHHHHHH
Confidence            3    79999999999998875

>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=99.77  E-value=2e-18  Score=164.35  Aligned_cols=299  Identities=18%  Similarity=0.231  Sum_probs=180.0

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC--C---CCeEEEcCCcCcchHHHHHHhCCeEEEEe
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS--E---NDGILCPIPQYPLYSASIALHGGTLVPYY  243 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~--~---gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~  243 (533)
                      .++|.+.|.++.....+...+...|++++|+++++..++-+|...  +   --.|+...|.|+.|......+.-....+.
T Consensus        45 s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt~~f~s~~y~w~  124 (363)
T PF04864_consen   45 SPELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPEQTDFFDSRLYKWA  124 (363)
T ss_dssp             -HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHCCCT-BTTEEEE
T ss_pred             cHHHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHHHHHhccccCcccc
Confidence            578899998888766666666678999999999999999998522  1   13699999999999987766544433333


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCc
Q 009517          244 LDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKF  323 (533)
Q Consensus       244 ~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~  323 (533)
                      -+.. .|. +-+            .+.+-.=++++||||.|.+     .+.++   +.-+..+|-|-+|..=.|++-   
T Consensus       125 Gda~-~~~-~~~------------~~~~~IElVTSPNNPDG~l-----r~~V~---~g~~~k~I~D~AYYWPhyTpI---  179 (363)
T PF04864_consen  125 GDAS-NFK-NSD------------NPSPYIELVTSPNNPDGQL-----REAVL---NGSSGKVIHDLAYYWPHYTPI---  179 (363)
T ss_dssp             EECC-CGT-T-S-------------CCGEEEEEESS-TTT-----------SS---TTTEEEEEEE-TT-STTTS-----
T ss_pred             ccHH-hhc-cCC------------CCCCeEEEEeCCCCCcccc-----cchhc---CCCCcceeeeeeeeccccccc---
Confidence            3322 231 100            0123334788999999987     34433   444567899999987445431   


Q ss_pred             ccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCC
Q 009517          324 HSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPK  402 (533)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~  402 (533)
                         ..-   .   +.|   |.+.|+||.- |-+|-|+||.++  .++++.+.|..... .+.+++.=+|.-+..+|+...
T Consensus       180 ---~~~---a---D~D---iMLFT~SK~T-GHAGSR~GWAlV--KD~~Va~kM~~y~~lnTiGvS~dsQLRa~kiLk~v~  244 (363)
T PF04864_consen  180 ---TAP---A---DHD---IMLFTLSKLT-GHAGSRFGWALV--KDEEVAKKMTKYMELNTIGVSRDSQLRALKILKVVL  244 (363)
T ss_dssp             ----S----B-----S---EEEEEHHHHC-S-GGG-EEEEEE--S-HHHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHH
T ss_pred             ---CCC---C---CCc---eEEEEEeccc-Cccccccceeee--cCHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHH
Confidence               111   1   345   8899999976 899999999998  68889998888766 778888888877776664211


Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceE-------------ecCCceeEEecccCCCHHHHHHHHhcCC
Q 009517          403 VGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITC-------------NKAEGAMYLFPRIQLPEKAIKAAEAEKT  469 (533)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~-------------~~~~gg~~~~~~~~~~~~~~~~~~~~~~  469 (533)
                      .+........+..+--++.+++|.+.|++.+..-.-+.+             +.....-|.|++++-++           
T Consensus       245 ~~~~~~~~~~~~F~f~~~~M~~RW~~L~~~~~~S~rFSLq~~~~~yC~ff~~~~~psPafAWlkCe~ee-----------  313 (363)
T PF04864_consen  245 DGYGTEKGTEDIFHFGYSTMRERWEKLRAAVSASKRFSLQKFSPQYCNFFKRVREPSPAFAWLKCEREE-----------  313 (363)
T ss_dssp             HHCCHHTTTTSHHHHHHHHHHHHHHHHHHHHCCSSSEEE---SCEEETTTTCEEE---SEEEEEESSCG-----------
T ss_pred             hcccCCCCccchHHHHHHHHHHHHHHHHHHHHhcCceecCcCCchhccccccccCCCCCeEEEecCCcc-----------
Confidence            000000000001122334567777778888765311221             11123448999887442           


Q ss_pred             CChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHH
Q 009517          470 VPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDF  523 (533)
Q Consensus       470 ~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~  523 (533)
                        +++ |...|++.||.-+.|..||..+.  |+|||+..++++++.++++|..+
T Consensus       314 --d~D-C~~~l~~~~I~tr~G~~fga~~r--yVRlSml~~~d~Fd~l~~rL~~l  362 (363)
T PF04864_consen  314 --DED-CYAVLREAKIITRSGVLFGADSR--YVRLSMLKRDDDFDQLLERLSKL  362 (363)
T ss_dssp             --GSS-HHHHHHCTTEEEEEGGGGTS-TT--EEEEESSS-HHHHHHHHHHHHCC
T ss_pred             --ccc-HHHHHHhCCcccCCCCccCCCCC--eEEEeccCCHHHHHHHHHHHHhh
Confidence              112 55778899999999999996444  99999999999999999999764

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=99.75  E-value=4.2e-17  Score=164.03  Aligned_cols=272  Identities=16%  Similarity=0.120  Sum_probs=178.1

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhc------cCC
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI------RSE  214 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~------~~~  214 (533)
                      ++++.+++.+++....    . ........+...++++.+.+..+  -..+++++++++++|++.+++..+      ..+
T Consensus        34 ~p~i~~ai~~~~~~~~----~-~~~~~~~~~~~~~la~~L~~~~p--~~~~~v~f~~sGseAve~Alkla~~~~~~~~~~  106 (339)
T PF00202_consen   34 HPEIAEAIAEQANKLN----Y-VSFSGFTHPEAAELAEKLAELFP--GGLDRVFFANSGSEAVEAALKLARQYHNKRAYT  106 (339)
T ss_dssp             -HHHHHHHHHHHHHCS----S-CSTTTSEEHHHHHHHHHHHHHSS--TTEEEEEEESSHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             ccccchhHHHHhhhcc----c-ccccceeccchhhhhhhhhhccc--cccceeeeccCchHHHHHHHHHhhccccccccc
Confidence            6899999999888732    1 12122245566677777776643  246799999999999999999887      333


Q ss_pred             C-CeEEEcCCcCcchHHHHHHhC-------------CeEEEEecCCCCC---CCCCHHHHHHHHHHHHhcCCCeeEEEEe
Q 009517          215 N-DGILCPIPQYPLYSASIALHG-------------GTLVPYYLDEATG---WGLETSEVKKQLEAAKAKGITVRALVVI  277 (533)
Q Consensus       215 g-d~Vlv~~p~~~~~~~~~~~~g-------------~~~~~v~~~~~~~---~~ld~~~l~~~i~~~~~~g~~~~~iil~  277 (533)
                      + .+|+....+|++........+             ..+..+|......   ..-..+.+++.+....  ..++.+||++
T Consensus       107 ~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iaavivE  184 (339)
T PF00202_consen  107 GRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDPAADEEEQACLNALEELIAALN--ADEIAAVIVE  184 (339)
T ss_dssp             TTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCHHHHHHHHHHHHHHHHHHHHHH--GGGEEEEEEE
T ss_pred             CCceEEEeeeeeeccCcccccccCCccccccccccccccccccCCccchhhhHHHHHHHHHHHHHhhc--CCcEEEEEEe
Confidence            3 789999999998664333321             1234555442100   0001122444443322  2268888888


Q ss_pred             CCCCCCcc-CCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCC
Q 009517          278 NPGNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGEC  356 (533)
Q Consensus       278 ~p~NPtG~-~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~  356 (533)
                      ..+...|. .++++.+++|.++|++||+++|+||+++++...|.  +..+..  .++   .||     +.+|+|.++  .
T Consensus       185 Pi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~--~~a~~~--~gv---~PD-----iv~~gK~l~--g  250 (339)
T PF00202_consen  185 PIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGK--FFASEH--YGV---DPD-----IVTFGKGLG--G  250 (339)
T ss_dssp             SSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSS--SSGHHH--HTS---SSS-----EEEEEGGGG--T
T ss_pred             ccccccCccccccchhhehcccccccccceecccccccccccCC--ccceec--ccc---cCc-----ccccccchh--h
Confidence            76666675 55677899999999999999999999999877664  333222  233   688     556789995  4


Q ss_pred             CCeeEEEEEecCCHHHHHHHHHhh-hccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009517          357 GKRGGYMEVTGFSAEVREQIYKVA-SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNS  435 (533)
Q Consensus       357 G~riG~v~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  435 (533)
                      |+++|.+++   .+++++.+.... ..|++.++++++++.+.|+           ..+. +.+.++.+++.+++.+.|++
T Consensus       251 G~p~sav~~---~~~i~~~~~~~~~~~T~~g~p~~~aaa~~~l~-----------~~~~-~~~~~~~~~~g~~l~~~L~~  315 (339)
T PF00202_consen  251 GLPISAVLG---SEEIMEAFQPGSHGSTFGGNPLSCAAALATLE-----------ILEE-EDLLERVRELGERLREGLRE  315 (339)
T ss_dssp             TSSEEEEEE---EHHHHTTSCTTSSTCTTTT-HHHHHHHHHHHH-----------HHHH-TTHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccccc---cchhhccccccccccccccchHhhhhhhhHHH-----------hhcc-HHHHHHHHHHHHHHHHHHHH
Confidence            899999998   889888774433 3778899999999988874           1221 33556666666677777665


Q ss_pred             C----CCceEecCCceeEE
Q 009517          436 L----EGITCNKAEGAMYL  450 (533)
Q Consensus       436 ~----~g~~~~~~~gg~~~  450 (533)
                      +    +-+.-++..|.|+.
T Consensus       316 l~~~~~~i~~vrg~Gl~~~  334 (339)
T PF00202_consen  316 LAARYPLIGEVRGIGLMIG  334 (339)
T ss_dssp             HHHHTTTEEEEEEETTEEE
T ss_pred             HHHhCCCeEEEeeeCeEEE
Confidence            4    44666777776654

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.75  E-value=4e-15  Score=148.73  Aligned_cols=216  Identities=14%  Similarity=0.152  Sum_probs=158.3

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHH----HHHHhCCeEEEEec
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA----SIALHGGTLVPYYL  244 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~----~~~~~g~~~~~v~~  244 (533)
                      ...|.++++++-+        .+..+.+++|+.|+..++..++ ++||.|+++...|.+-..    .++..|.++..++.
T Consensus        65 ~~~lE~~~a~LEg--------~~~~~afsSGmaAI~~~~l~ll-~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~  135 (396)
T COG0626          65 RDALEEALAELEG--------GEDAFAFSSGMAAISTALLALL-KAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDP  135 (396)
T ss_pred             HHHHHHHHHHhhC--------CCcEEEecCcHHHHHHHHHHhc-CCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECC
Confidence            5677777777742        6788999999999999999998 799999999998887443    44557877776653


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcc
Q 009517          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (533)
Q Consensus       245 ~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~  324 (533)
                      .       +.+.+++++.+.     ++++|++++|.|||-.+.+   +.+|+++|+++|+++|+|+.|..-++..  |  
T Consensus       136 ~-------~~~~~~~~~~~~-----~tk~v~lEtPsNP~l~v~D---I~~i~~~A~~~g~~vvVDNTfatP~~q~--P--  196 (396)
T COG0626         136 G-------DDEALEAAIKEP-----NTKLVFLETPSNPLLEVPD---IPAIARLAKAYGALVVVDNTFATPVLQR--P--  196 (396)
T ss_pred             C-------ChHHHHHHhccc-----CceEEEEeCCCCccccccc---HHHHHHHHHhcCCEEEEECCcccccccC--h--
Confidence            2       556677776632     7999999999999999888   9999999999999999999998755432  1  


Q ss_pred             cHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh--ccccCChHHHHHHHHHcCCCC
Q 009517          325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS--VNLCSNISGQILASLVMSPPK  402 (533)
Q Consensus       325 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~--~~~~~~~~~q~a~~~~L~~~~  402 (533)
                          +  ++   ..|   |++.|.+|.++|-...=.|.+++  .++++.+.+.....  .....++..++.+.+-|+   
T Consensus       197 ----L--~~---GaD---IVvhSaTKyl~GHsDvl~G~v~~--~~~~~~~~~~~~~~~~~G~~l~p~dA~l~lRGlk---  259 (396)
T COG0626         197 ----L--EL---GAD---IVVHSATKYLGGHSDVLGGVVLT--PNEELYELLFFAQRANTGAVLSPFDAWLLLRGLR---  259 (396)
T ss_pred             ----h--hc---CCC---EEEEeccccccCCcceeeeEEec--ChHHHHHHHHHHHHhhcCCCCCHHHHHHHHhccc---
Confidence                1  11   234   89999999996644466786664  24555565533322  445567777776666553   


Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Q 009517          403 VGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGIT  440 (533)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~  440 (533)
                                 .+..+.++..++...+.+.|.+.|.++
T Consensus       260 -----------TL~~Rm~~~~~nA~~IA~~L~~~p~V~  286 (396)
T COG0626         260 -----------TLALRMERHNENALKIAEFLADHPKVK  286 (396)
T ss_pred             -----------hHHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence                       244455666777888999998876654

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=99.74  E-value=5.7e-17  Score=146.45  Aligned_cols=167  Identities=18%  Similarity=0.224  Sum_probs=129.7

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchH-HHHHHhCCeEEEEecCCC
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS-ASIALHGGTLVPYYLDEA  247 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~-~~~~~~g~~~~~v~~~~~  247 (533)
                      +.++++.++++++      .+.+++++++|+++|+..+++.+. .++++|+++.++|++.. ..+...|.++..++.+..
T Consensus         2 ~~~~~~~l~~~~~------~~~~~~~~~~~~t~a~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~   74 (170)
T cd01494           2 LEELEEKLARLLQ------PGNDKAVFVPSGTGANEAALLALL-GPGDEVIVDANGHGSRYWVAAELAGAKPVPVPVDDA   74 (170)
T ss_pred             HHHHHHHHHHHcC------CCCCcEEEeCCcHHHHHHHHHHhC-CCCCEEEEeecccceehhhHHHhcCCEEEEeccCCC
Confidence            4578888888874      457899999999999999999998 67999999999999988 888889999999998765


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHH
Q 009517          248 TGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFK  327 (533)
Q Consensus       248 ~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~  327 (533)
                      .....+.+.+++....     .+++++++++++||+|...+   .++|+++|+++|+++|+|++|..+......  ..  
T Consensus        75 ~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~g~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~~~~--~~--  142 (170)
T cd01494          75 GYGGLDVAILEELKAK-----PNVALIVITPNTTSGGVLVP---LKEIRKIAKEYGILLLVDAASAGGASPAPG--VL--  142 (170)
T ss_pred             Cccchhhhhhhhcccc-----CceEEEEEecCcCCCCeEcC---HHHHHHHHHHcCCEEEEecccccccccccc--cc--
Confidence            4333343355443322     37899999999999999988   588889999999999999999986654311  00  


Q ss_pred             HHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEE
Q 009517          328 KVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV  365 (533)
Q Consensus       328 ~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~  365 (533)
                       . ...   ..   .+++.|++|.+ |  +.++|++++
T Consensus       143 -~-~~~---~~---d~~~~s~~K~~-~--~~~~G~l~~  169 (170)
T cd01494         143 -I-PEG---GA---DVVTFSLHKNL-G--GEGGGVVIV  169 (170)
T ss_pred             -c-ccc---cC---CEEEEEccccc-C--CCceEEEEe
Confidence             0 111   23   37789999998 4  478999875

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=99.74  E-value=2.1e-15  Score=152.06  Aligned_cols=315  Identities=14%  Similarity=0.132  Sum_probs=207.2

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccH---HHHHHHHHHHHhhcCCCCCCCCEEEcCC-hHHHHHHHHHHhccCCCC
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIK---GLRDTIAAGIEARDGFPADPNDIFLTDG-ASPAVHMMMQLLIRSEND  216 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~---~lr~aia~~~~~~~g~~~~~~~i~~t~G-~~~al~~~~~~l~~~~gd  216 (533)
                      |..|++++.+.+.+..+.+...|....-.+   ++.+.+.+.+...++.+ +..+|++++| ++.|++.++..+. .+|+
T Consensus         4 p~~v~~~~~~~~~~~~~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~-~~~~v~~~~gsgT~a~ea~~~nl~-~~~~   81 (349)
T TIGR01364         4 PEEVLEQAQKELLNFNGTGMSVMEISHRSKEFEAVANEAESDLRELLNIP-DNYEVLFLQGGATGQFAAVPLNLL-AEGK   81 (349)
T ss_pred             CHHHHHHHHHHHhCccCCCccccccCCCchHHHHHHHHHHHHHHHHhCCC-CCceEEEEcCCchHHHHHHHHhcC-CCCC
Confidence            789999999988753322233333222123   55555666666666631 2346888876 9999999999998 6899


Q ss_pred             eEEEcCCcCcc--hHHHHHHhCCeEEEEecCCCCCC--CCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHH
Q 009517          217 GILCPIPQYPL--YSASIALHGGTLVPYYLDEATGW--GLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQ  292 (533)
Q Consensus       217 ~Vlv~~p~~~~--~~~~~~~~g~~~~~v~~~~~~~~--~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l  292 (533)
                      ++++..-+..+  +..+++..|. +..+..++..+|  .+|+++++.  ++      ++++|.+++-.|.||+..+    
T Consensus        82 ~~l~i~~G~fg~r~~~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~~--~~------~~~~v~~th~ETstGv~~~----  148 (349)
T TIGR01364        82 VADYIVTGAWSKKAAKEAKKYGV-VNVVASGKEGNYTKIPDPSTWEI--SE------DAAYVHYCANETIHGVEFR----  148 (349)
T ss_pred             eEEEEECCHHHHHHHHHHHHhCC-cEEEeccccCCCCCCCCHHhcCC--CC------CCCEEEEcCCCCcccEecc----
Confidence            88877766555  4567788898 777775532222  356666552  22      7899999999999999865    


Q ss_pred             HHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHH
Q 009517          293 RAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEV  372 (533)
Q Consensus       293 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~  372 (533)
                          ++++.+++++++|.+.+-    |..+ ..+.    ++     +   +++.|..|++ |++|  +|++.+   ++++
T Consensus       149 ----~l~~~~~~l~iVDavss~----g~~~-id~~----~~-----d---~~~~ssqK~l-gP~G--lg~l~~---s~~~  201 (349)
T TIGR01364       149 ----ELPDVKNAPLVADMSSNI----LSRP-IDVS----KF-----G---LIYAGAQKNI-GPAG--LTVVIV---RKDL  201 (349)
T ss_pred             ----eecccCCCeEEEEccccc----cCcc-CCHH----Hc-----c---EEEEeccccc-CCCc--eEEEEE---CHHH
Confidence                566678999999999974    3222 2221    11     2   7788889998 7888  466665   7877


Q ss_pred             HHHHHHh----------h--h-ccccCChHHHHHHHHHcCCCCCCChhHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCC
Q 009517          373 REQIYKV----------A--S-VNLCSNISGQILASLVMSPPKVGDESYESYCA--ERDGILSSLARRAKTLEDAFNSLE  437 (533)
Q Consensus       373 ~~~l~~~----------~--~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~  437 (533)
                      ++++...          .  . ..++++....+++.++|+.          ..+  .++.+.++.++..+++++.|++++
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~----------l~~~gG~e~i~~r~~~l~~~l~~~l~~~~  271 (349)
T TIGR01364       202 LGRASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKW----------LKEQGGVKAIEKRNQAKAQLLYDTIDNSN  271 (349)
T ss_pred             HhhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHH----------HHHcCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence            7655321          1  1 2246677777777777641          222  277888889999999999999997


Q ss_pred             CceEec--C--Cc-eeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCc
Q 009517          438 GITCNK--A--EG-AMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQE  510 (533)
Q Consensus       438 g~~~~~--~--~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~  510 (533)
                      |+....  +  .. ....+   ..|..          ..+..+ ...+.++|+++.+|...   .+  .||+|+.  ++.
T Consensus       272 gl~~~~~~~~~rs~~v~sf---~~~~~----------~~~~~~-~~~~~~~Gi~~~~~~~~---~g--~vRvS~~~~nt~  332 (349)
T TIGR01364       272 GFYRNPVDPRNRSRMNVVF---TLGNE----------ELEKRF-LKEAEERGLVSLKGHRS---VG--GMRASIYNAMPL  332 (349)
T ss_pred             CeeccCCCHHHcCCeEEEE---ecCCh----------hHhHHH-HHHHHHCCCcccCCccc---cC--eeEEECcCCCCH
Confidence            754332  1  12 22222   22210          011222 24567799988776551   22  8999995  889


Q ss_pred             CcHHHHHHHHHHHHHH
Q 009517          511 DKIPAIVTRLTDFHKN  526 (533)
Q Consensus       511 e~i~~~~~~l~~~l~~  526 (533)
                      ++|+.++++|++++++
T Consensus       333 edid~l~~al~~~~~~  348 (349)
T TIGR01364       333 EGVQALVDFMKEFQKK  348 (349)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999987654

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]

Probab=99.74  E-value=1.1e-15  Score=141.41  Aligned_cols=315  Identities=16%  Similarity=0.182  Sum_probs=200.4

Q ss_pred             HHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEc
Q 009517          142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCP  221 (533)
Q Consensus       142 ~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~  221 (533)
                      .+..+++.++...     ..-|+...-...|.+.+|+..++.-       -.++++ |+.+..++++..+..+|.+|++.
T Consensus        36 deMr~am~eA~vg-----DdVyGeD~tt~rLE~~vA~l~GKEA-------gLFv~S-GTmgNllaIm~Hc~~rg~eii~g  102 (384)
T KOG1368|consen   36 DEMRRAMAEASVG-----DDVYGEDPTTNRLEQRVAELFGKEA-------GLFVPS-GTMGNLLAIMVHCHQRGSEIIVG  102 (384)
T ss_pred             HHHHHHHhhcccC-----cccccCCccHHHHHHHHHHHhCccc-------eeeecc-cccccHHHHHHHhcCCCceEEec
Confidence            4445555544433     2335444446899999999986432       245555 45556666666654689999998


Q ss_pred             CCcCc-chHH--HHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHH--hcCCCeeEEEEeCCCCCCc-cCCCHHHHHHH
Q 009517          222 IPQYP-LYSA--SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAK--AKGITVRALVVINPGNPTG-QVLAEENQRAI  295 (533)
Q Consensus       222 ~p~~~-~~~~--~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~--~~g~~~~~iil~~p~NPtG-~~~s~~~l~~i  295 (533)
                      +-++. .|.+  +..+.|+.+.++...+  +..+|+++++.+++..+  -..+.+++|++.|-+|-+| .++|.+++.++
T Consensus       103 d~~HI~~~E~gg~s~l~gv~~~tv~~e~--dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v  180 (384)
T KOG1368|consen  103 DRAHIHRYEQGGISQLAGVHVRTVKNEN--DGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRV  180 (384)
T ss_pred             cchheeehhccChhhhccceeEeeeeCC--CCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHH
Confidence            87764 2333  3455577776666544  44789999999998532  2346799999998876555 99999999999


Q ss_pred             HHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHH
Q 009517          296 VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQ  375 (533)
Q Consensus       296 ~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~  375 (533)
                      .+||++||+-+.+|.+--.-.-  -....++..++...    +.   + --.|||.+    |.++|-+++  .++++++.
T Consensus       181 ~~lak~~glkLH~DGARi~NAa--vasgV~vk~i~~~f----DS---V-siCLSKgl----gAPVGSViV--G~k~FI~k  244 (384)
T KOG1368|consen  181 KALAKRHGLKLHMDGARIFNAA--VASGVPVKKICSAF----DS---V-SICLSKGL----GAPVGSVIV--GSKDFIDK  244 (384)
T ss_pred             HHHHhccCCeeecchhhhhhHH--HHcCCCHHHHHHhh----hh---h-hhhhhccC----CCCcccEEE--ccHHHHHH
Confidence            9999999999999987532111  11234555655543    12   1 23589977    678998877  59999988


Q ss_pred             HHHhhh-ccccCChHHH--HHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecC--CceeEE
Q 009517          376 IYKVAS-VNLCSNISGQ--ILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKA--EGAMYL  450 (533)
Q Consensus       376 l~~~~~-~~~~~~~~~q--~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~--~gg~~~  450 (533)
                      .+.++. ...+.-..+.  +|+..+|+.              .-...+.-.++...|.+.++..+++.+.-|  +.. ++
T Consensus       245 A~~~RKalGGGmRQsGvLaaaaLval~~--------------~~~~L~~dHk~A~~lAe~~~~~~~i~v~v~a~etN-iv  309 (384)
T KOG1368|consen  245 ARHFRKALGGGMRQSGVLAAAALVALDE--------------NVPLLRADHKRAKELAEYINTPEEIRVEVPAVETN-IV  309 (384)
T ss_pred             HHHHHHHhcCchhHHHHHHHHHHHHhhc--------------chHHHHHHHHHHHHHHHHhccccceeeecchhhcc-ee
Confidence            877664 3333333333  333333321              111233334556677778877755776544  333 33


Q ss_pred             ecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHH
Q 009517          451 FPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLT  521 (533)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~  521 (533)
                      .+.+.-+          +++ .+.++ +.++++||.+.+|..+       .+||.+.  ++.++++.++..+.
T Consensus       310 ~~~l~q~----------~~~-~~~l~-~~~~k~gi~lm~~~s~-------r~Rivlh~Qvt~~~ve~~~~~~~  363 (384)
T KOG1368|consen  310 NMVLCQA----------RLT-AEELC-KFLEKNGILLMGGASR-------RIRIVLHHQVTDEDVEYVKSVLS  363 (384)
T ss_pred             eeecccc----------cCC-HHHHH-HHHHHCCeEEeecccc-------ceEEEEEEecCHHHHHHHHHHHH
Confidence            3222211          122 33444 4567899999987654       4799995  89999999998884

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.73  E-value=3.2e-15  Score=154.40  Aligned_cols=216  Identities=13%  Similarity=0.109  Sum_probs=147.5

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchH----HHHHHhCCeEEEEec
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS----ASIALHGGTLVPYYL  244 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~----~~~~~~g~~~~~v~~  244 (533)
                      ...|++.++++.+        .+..+++++++.|+.+++..++ .+||+|+++...|....    ..+...|++++.++ 
T Consensus        71 ~~~le~~la~l~g--------~~~~v~fsSG~~Ai~~al~~ll-~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd-  140 (437)
T PRK05613         71 VEALENRIASLEG--------GVHAVAFASGQAAETAAILNLA-GAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVE-  140 (437)
T ss_pred             HHHHHHHHHHHhC--------CCeEEEeCCHHHHHHHHHHHhc-CCCCEEEECCCccHHHHHHHHHHHHhcCeEEEEEC-
Confidence            5677777777764        2345555556688888888887 79999999999998763    34566799998887 


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcc
Q 009517          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (533)
Q Consensus       245 ~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~  324 (533)
                      +.     .|++.++++|++      ++++|+++++.||+|.+.+   +++|+++|+++|+++|+|.++.....     ..
T Consensus       141 ~~-----~d~e~l~~~l~~------~tk~V~~e~~~Np~~~v~d---i~~I~~la~~~gi~livD~t~a~g~~-----~~  201 (437)
T PRK05613        141 NP-----DDPESWQAAVQP------NTKAFFGETFANPQADVLD---IPAVAEVAHRNQVPLIVDNTIATAAL-----VR  201 (437)
T ss_pred             CC-----CCHHHHHHhCCc------cCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCeEEEECCCccccc-----cC
Confidence            22     278999999987      7999999999999999988   99999999999999999999864221     11


Q ss_pred             cHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCC---------------------------------HH
Q 009517          325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFS---------------------------------AE  371 (533)
Q Consensus       325 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~---------------------------------~~  371 (533)
                      +.     ++   ..|   +++.|++|.+ +-.|--+|-+++.+.+                                 .+
T Consensus       202 p~-----~~---GaD---ivv~S~~K~l-~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (437)
T PRK05613        202 PL-----EL---GAD---VVVASLTKFY-TGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFVTPDPAYHGLKYADLGAPA  269 (437)
T ss_pred             hH-----Hh---CCC---EEEeecccee-cCCCcceeEEEEecCcccccccccccccCCCCCCCccccccccccccchHH
Confidence            11     11   234   7899999988 4355444544441101                                 00


Q ss_pred             HHHHHH-Hhh-hccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 009517          372 VREQIY-KVA-SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGI  439 (533)
Q Consensus       372 ~~~~l~-~~~-~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~  439 (533)
                      ++.... ... ....+.++..++.+..-|+              .+....++..++...+.+.|++.|.+
T Consensus       270 ~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~--------------TL~lR~~~~~~nA~~lA~~L~~hp~V  325 (437)
T PRK05613        270 FGLKARAGLLRDTGATLSPFNAWVTAQGLD--------------TLSLRLERHNENAIKVAEFLNNHEKV  325 (437)
T ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHcccC--------------cHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence            000011 111 2445566777666655553              23445556677788899999987664

>PRK06434 cystathionine gamma-lyase; Validated

Probab=99.73  E-value=3e-15  Score=152.03  Aligned_cols=211  Identities=13%  Similarity=0.129  Sum_probs=147.1

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcch----HHHHHHhCCeEEEEec
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLY----SASIALHGGTLVPYYL  244 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~----~~~~~~~g~~~~~v~~  244 (533)
                      ..+|.+.++++.+        .+..+++++++.|+.+++.+++ ++||+|+++.+.|.+.    ...+...|++++.++.
T Consensus        66 ~~~lE~~la~leg--------~~~av~~sSG~aAi~~al~all-~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~fvd~  136 (384)
T PRK06434         66 VQAFEEKYAVLEN--------AEHALSFSSGMGAITSAILSLI-KKGKRILSISDLYGQTFYFFNKVLKTLGIHVDYIDT  136 (384)
T ss_pred             HHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHHh-CCCCEEEEecCccchHHHHHHHHHHhcCcEEEEECC
Confidence            5677888888764        4568888999999999999988 8999999988766653    3566778999999988


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcc
Q 009517          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (533)
Q Consensus       245 ~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~  324 (533)
                      ++.+++.++.              .++++|++.+|.|||+.+.+   +++|+++|++++  +++|.++..- +.+. +  
T Consensus       137 ~~~~~~~l~~--------------~~tklv~~e~~snpt~~v~D---i~~I~~la~~~~--lvVD~t~~s~-~~~~-p--  193 (384)
T PRK06434        137 DRLNSLDFDP--------------SNYDLIYAESITNPTLKVPD---IKNVSSFCHEND--VIVDATFASP-YNQN-P--  193 (384)
T ss_pred             CChhheeecC--------------CCeeEEEEEcCCCCCceeec---HHHHHHHHHHcC--eEEECCCCCc-ccCC-c--
Confidence            6533343321              16899999999999999876   999999999998  4569997432 2111 1  


Q ss_pred             cHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCC
Q 009517          325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKV  403 (533)
Q Consensus       325 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~  403 (533)
                       +     +.   ..|   +++.|.+|.++|..+.-.|.++.  .++++.+.+..... .....+++.++.+..-|+    
T Consensus       194 -l-----~~---gaD---ivv~S~tK~i~G~~d~~gG~vv~--~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~gL~----  255 (384)
T PRK06434        194 -L-----DL---GAD---VVIHSATKYISGHSDVVMGVAGT--NNKSIFNNLVERRKTLGSNPDPIQAYLALRGLK----  255 (384)
T ss_pred             -h-----hc---CCC---EEEeecccccCCCCCceEEEEec--CcHHHHHHHHHHHHhcCCCCCHHHHHHHHhCCC----
Confidence             1     11   234   78899999995422255677765  35667676665542 444556666555555443    


Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 009517          404 GDESYESYCAERDGILSSLARRAKTLEDAFNSLEGI  439 (533)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~  439 (533)
                                .+..+.++.+++...+.+.|+..|.+
T Consensus       256 ----------tL~~R~~r~~~~a~~~a~~L~~~p~v  281 (384)
T PRK06434        256 ----------TLGLRMEKHNKNGMELARFLRDSKKI  281 (384)
T ss_pred             ----------cHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence                      24445566677777888888887665

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=99.73  E-value=4.2e-15  Score=150.17  Aligned_cols=325  Identities=16%  Similarity=0.162  Sum_probs=210.1

Q ss_pred             cccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHH-HHHhCCeE
Q 009517          161 GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS-IALHGGTL  239 (533)
Q Consensus       161 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~-~~~~g~~~  239 (533)
                      ..|.....+.+|.++++++++        .+.++.+++|+.|+.++....+ +|||+|  +.++|..-... +...|+.+
T Consensus        65 e~yag~~s~~~lE~~va~~~G--------~~~av~v~sGT~Al~ll~~l~l-~pGDeV--psn~~f~Tt~ahIe~~Gav~  133 (450)
T TIGR02618        65 EAYAGSRNFYHLERTVRELYG--------FKYVVPTHQGRGAENLLSQIAI-KPGDYV--PGNMYFTTTRYHQEKNGATF  133 (450)
T ss_pred             hhhcCCCcHHHHHHHHHHHHC--------CCeEEEcCCHHHHHHHHHHhCC-CCcCEE--CCceeHHHHHHHHHhCCeEE
Confidence            358877778999999999975        5679999999999998776666 799977  67777554443 67888877


Q ss_pred             EEEecCC--------CCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCC-CCccCCCHHHHHHHHHHHHHcCCEEEEcc
Q 009517          240 VPYYLDE--------ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGN-PTGQVLAEENQRAIVDFCKKEGLVLLADE  310 (533)
Q Consensus       240 ~~v~~~~--------~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~N-PtG~~~s~~~l~~i~~l~~~~~~~lI~De  310 (533)
                      +.++.++        ..++.+|++.++++|++..  ..+++.|.+++++| .+|.++|.+++++|.++|++||+.||.|.
T Consensus       134 vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~--~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~Da  211 (450)
T TIGR02618       134 VDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVG--ADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDA  211 (450)
T ss_pred             EeeecccccccccCCCCCCCcCHHHHHHHhcccc--CcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEc
Confidence            7665441        2356789999999998631  12456788888888 55899999999999999999999999999


Q ss_pred             cccc-c-cc----cCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhc--
Q 009517          311 VYQE-N-VY----VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASV--  382 (533)
Q Consensus       311 ~y~~-~-~~----~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~--  382 (533)
                      +... - .|    .++-...++..+..++.. +.|   .+..|..|..    |.++|-+++. .++++.++++.....  
T Consensus       212 AR~~gNA~~I~~re~g~~~~~i~ei~~e~~~-~aD---~~~~S~~Kd~----~~~~GG~l~~-~d~~l~~k~r~~~~~~e  282 (450)
T TIGR02618       212 TRCVENAYFIKEREQGYEDKSIAEILKEMMS-YAD---GCTMSGKKDC----LVNIGGFLCM-NDDEMFQSAKELVVVFE  282 (450)
T ss_pred             cchhhChhhhhcccccccCCCHHHHHHHHhc-cCc---EEEEeeccCC----CCCCceEEEe-CCHHHHHHHHHHhhhcC
Confidence            8753 1 11    111223456566666532 344   4677888876    3454444442 388899888776421  


Q ss_pred             ---cccC-ChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccC--C
Q 009517          383 ---NLCS-NISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQ--L  456 (533)
Q Consensus       383 ---~~~~-~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~--~  456 (533)
                         +++. ..-...+++..|..          ..++  ...++-....++|.+.|.+. |+.++.|.||.-+|++..  +
T Consensus       283 G~~tyGgla~r~~~ala~gL~e----------~~~~--~y~~~r~~~a~~La~~L~~~-Gvpv~~p~ggh~V~vda~~~l  349 (450)
T TIGR02618       283 GMPSYGGLAGRDMEAMAIGIRE----------AVDY--EYIEHRVKQVRYLGDKLKAA-GVPIVEPVGGHAVFLDARRFL  349 (450)
T ss_pred             CccccCchhhhhHHHHHHHHHH----------hhhH--HHHHHHHHHHHHHHHHHHHC-CCcccCCCCcceEEEEhHHhC
Confidence               1111 11122222223321          1111  11122233467899999998 999988888888887643  1


Q ss_pred             CHHHHHHHHhcCCCChHHHHHHHHHccceEEEc-CCC-CCCC--CC------CceEEEEec---CCcCcHHHHHHHHHHH
Q 009517          457 PEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVP-GSG-FGQV--PG------TWHFRCTIL---PQEDKIPAIVTRLTDF  523 (533)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~p-g~~-f~~~--~g------~~~iRis~~---~~~e~i~~~~~~l~~~  523 (533)
                      |.--     .... ....++.++..+.||--.- |+. ++..  .+      -..+|+++.   -|.+.++..+++|..+
T Consensus       350 ph~~-----~~~~-p~~al~~~ly~~~gir~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~  423 (450)
T TIGR02618       350 PHIP-----QDQF-PAQSLAASIYVETGVRSMERGIVSAGRNNVTGEHHRPKLELVRLTIPRRVYTYAHMDVVADGIIKL  423 (450)
T ss_pred             CCCC-----hhhC-hHHHHHHHHHHHhCccEEeecceecccCCCCCcccCCccceeeeccccccccHhHHHHHHHHHHHH
Confidence            2100     0011 2334455667778875332 332 1211  11      137999993   6778899999999887


Q ss_pred             HHH
Q 009517          524 HKN  526 (533)
Q Consensus       524 l~~  526 (533)
                      .++
T Consensus       424 ~~~  426 (450)
T TIGR02618       424 YKH  426 (450)
T ss_pred             Hhh
Confidence            765

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.73  E-value=5.4e-15  Score=145.70  Aligned_cols=187  Identities=18%  Similarity=0.202  Sum_probs=147.9

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHH----HhCCeEEEEec
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA----LHGGTLVPYYL  244 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~----~~g~~~~~v~~  244 (533)
                      ...|.+.+++..+        ...++++++|+.|+..++..++ ..|+.|+.....|.+-..+++    .+|++...+.+
T Consensus        79 ~~~le~~iaal~g--------a~~~l~fsSGmaA~~~al~~L~-~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~  149 (409)
T KOG0053|consen   79 RDVLESGIAALEG--------AAHALLFSSGMAAITVALLHLL-PAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDV  149 (409)
T ss_pred             hHHHHHHHHHHhC--------CceEEEecccHHHHHHHHHHhc-CCCCcEEEeCCCcccHHHHHHHHHHHhCceeeeech
Confidence            4566666766643        4569999999999999999998 789999999999998665544    46777777765


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcc
Q 009517          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (533)
Q Consensus       245 ~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~  324 (533)
                      +       |++++++++++      ++++|++++|.||+..+.+   +++|+++|+++|+++++|+.+....+-..    
T Consensus       150 ~-------~~~~~~~~i~~------~t~~V~~ESPsNPll~v~D---I~~l~~la~~~g~~vvVDnTf~~p~~~~p----  209 (409)
T KOG0053|consen  150 D-------DLKKILKAIKE------NTKAVFLESPSNPLLKVPD---IEKLARLAHKYGFLVVVDNTFGSPYNQDP----  209 (409)
T ss_pred             h-------hHHHHHHhhcc------CceEEEEECCCCCcccccc---HHHHHHHHhhCCCEEEEeCCcCcccccCh----
Confidence            4       57888888877      7999999999999999988   99999999999999999999987544221    


Q ss_pred             cHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHc
Q 009517          325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVM  398 (533)
Q Consensus       325 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L  398 (533)
                        ..+       ..|   |++.|.+|.++|-..+=.|.++.  ...++.+.+...+. ..++.+++.+....+-|
T Consensus       210 --L~l-------GAD---IV~hSaTKyi~Ghsdvi~G~iv~--n~~~~~~~l~~~~~~lg~~~~p~~~~ll~Rgl  270 (409)
T KOG0053|consen  210 --LPL-------GAD---IVVHSATKYIGGHSDVIGGSVVL--NSEELASRLKFLQEDLGWCEDPFDLFLLSRGL  270 (409)
T ss_pred             --hhc-------CCC---EEEEeeeeeecCCcceeeeEEec--CcHHHHHHHHHHHHHhcCCCCHHHHHHHhcCc
Confidence              111       245   88999999997655577888876  24888888888776 77888888877766555

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=99.73  E-value=1.9e-15  Score=154.03  Aligned_cols=281  Identities=19%  Similarity=0.264  Sum_probs=182.9

Q ss_pred             HHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEc
Q 009517          142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCP  221 (533)
Q Consensus       142 ~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~  221 (533)
                      .+.++++.+.+.+..   ...++  .-..+|.++++++++        .++++.+++++.|+.+++.++-.++||+|++|
T Consensus         5 ~e~~~~v~~~l~s~~---~~~~g--~~~~~fE~~~a~~~g--------~~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p   71 (363)
T PF01041_consen    5 EEEIDAVLEVLRSGW---LSTYG--PYVEEFEKEFAEYFG--------VKYAVAVSSGTSALHLALRALGLGPGDEVIVP   71 (363)
T ss_dssp             HHHHHHHHHHHHHTC---CSSSS--HHHHHHHHHHHHHHT--------SSEEEEESSHHHHHHHHHHHTTGGTTSEEEEE
T ss_pred             HHHHHHHHHHHHhCC---ccCCC--HHHHHHHHHHHHHhC--------CCeEEEeCChhHHHHHHHHhcCCCcCceEecC
Confidence            567778888887621   12222  226789999999975        57899999999999999999843689999999


Q ss_pred             CCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHH
Q 009517          222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK  301 (533)
Q Consensus       222 ~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~  301 (533)
                      .-+|.....++...|++++.++++++ ++.+|++.++++|++      ++++|++.|..   |...   ++.+|.++|++
T Consensus        72 ~~t~~~~~~ai~~~G~~pv~~Di~~~-~~~id~~~~~~~i~~------~t~ai~~~h~~---G~~~---d~~~i~~~~~~  138 (363)
T PF01041_consen   72 AYTFPATASAILWAGAEPVFVDIDPE-TLNIDPEALEKAITP------KTKAILVVHLF---GNPA---DMDAIRAIARK  138 (363)
T ss_dssp             SSS-THHHHHHHHTT-EEEEE-BETT-TSSB-HHHHHHHHHT------TEEEEEEE-GG---GB------HHHHHHHHHH
T ss_pred             CCcchHHHHHHHHhccEEEEEeccCC-cCCcCHHHHHHHhcc------CccEEEEecCC---CCcc---cHHHHHHHHHH
Confidence            99999999999999999999999965 889999999999998      89999988763   3333   49999999999


Q ss_pred             cCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecC--CccCCCCCCCeeEEEEEecCCHHHHHHHHHh
Q 009517          302 EGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSV--SKGYYGECGKRGGYMEVTGFSAEVREQIYKV  379 (533)
Q Consensus       302 ~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~--SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~  379 (533)
                      +|++||+|.+++....-.+.+..+           ..+   +.+.||  +|.+.  +| -.|++++  .++++.+.++.+
T Consensus       139 ~~i~lIeD~a~a~g~~~~g~~~G~-----------~gd---~~~fSf~~~K~i~--~g-eGG~v~~--~~~~~~~~~~~~  199 (363)
T PF01041_consen  139 HGIPLIEDAAQAFGARYKGRPVGS-----------FGD---IAIFSFHPTKIIT--TG-EGGAVVT--NDPELAERARAL  199 (363)
T ss_dssp             TT-EEEEE-TTTTT-EETTEETTS-----------SSS---EEEEESSTTSSS---SS-S-EEEEE--STHHHHHHHHHH
T ss_pred             cCCcEEEccccccCceeCCEeccC-----------CCC---ceEecCCCCCCCc--CC-CCeeEEe--cHHHHHHHhhhh
Confidence            999999999998643322211111           123   557777  58773  34 4588877  478888888776


Q ss_pred             hhcc------------------ccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceE
Q 009517          380 ASVN------------------LCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITC  441 (533)
Q Consensus       380 ~~~~------------------~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~  441 (533)
                      ...+                  +..+.+..+++..-|              +.++...++-+++.+.+.+.|..++++..
T Consensus       200 ~~~g~~~~~~~~~~~~~~~g~n~rm~~~~AAigl~QL--------------~~L~~~~~~R~~~a~~y~~~L~~~~~~~~  265 (363)
T PF01041_consen  200 RNHGRSRDAFRRYRHELPPGYNFRMSELQAAIGLAQL--------------KRLDEIIARRRENAQRYREALAGIPGIKP  265 (363)
T ss_dssp             TBTTEETSECSTTEESSSS--B-B-BHHHHHHHHHHH--------------HTHHHHHHHHHHHHHHHHHHHTTGTTEEE
T ss_pred             hccCcCccccccccccccCCcccccHHHHHHHHHHHH--------------HHhhhhHHHHHHHHHHHHHHHhcCCCccc
Confidence            5311                  122333333333333              33455555556677788889998887754


Q ss_pred             ec-CCc----eeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCC
Q 009517          442 NK-AEG----AMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGS  491 (533)
Q Consensus       442 ~~-~~g----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~  491 (533)
                      .. +.+    .++.++ +.++...        ...-+. +.+.|.+.||...+..
T Consensus       266 ~~~~~~~~~~~~~~f~-i~~~~~~--------~~~rd~-l~~~L~~~GI~~~~~~  310 (363)
T PF01041_consen  266 PPIPDGAERSSYYRFP-IRLPDEA--------LADRDE-LVEALRARGIETRPHY  310 (363)
T ss_dssp             EGCGTTTEEBCESSEE-EEETCCG--------CSTHHH-HHHHHHHTTBEEBCST
T ss_pred             cccccccccccccccc-ccccccc--------cchHHH-HHHHHHHCCCcccccc
Confidence            33 222    121211 2222100        001223 3466778899998755

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>PLN02724 Molybdenum cofactor sulfurase

Probab=99.73  E-value=4e-15  Score=165.64  Aligned_cols=309  Identities=12%  Similarity=0.073  Sum_probs=194.3

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCC--CEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHH---HHhCCeEEEEe
Q 009517          169 IKGLRDTIAAGIEARDGFPADPN--DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI---ALHGGTLVPYY  243 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~--~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~---~~~g~~~~~v~  243 (533)
                      +.+.|+.+|++++      .+++  .|++|+|+|+++.+++..+...+||+|++..-.|.+.....   +..|+++..++
T Consensus        80 ~e~aR~~ia~~lg------a~~~~~~VvFtsnaT~alnlva~~l~~~~gd~Iv~t~~eH~svl~~~~~a~~~G~~v~~v~  153 (805)
T PLN02724         80 IESARQQVLEYFN------APPSDYACVFTSGATAALKLVGETFPWSSESHFCYTLENHNSVLGIREYALEKGAAAIAVD  153 (805)
T ss_pred             HHHHHHHHHHHhC------CCccceEEEEeCChHHHHHHHHHHCCCCCCCeEEEeeccccchHHHHHHHHHcCCeEEecc
Confidence            5677888888775      4444  58999999999999999884368999999877776655443   34588998888


Q ss_pred             cCCCC------CCCCCH--HHHHHHHHH----HHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHc-----CCEE
Q 009517          244 LDEAT------GWGLET--SEVKKQLEA----AKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKE-----GLVL  306 (533)
Q Consensus       244 ~~~~~------~~~ld~--~~l~~~i~~----~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~-----~~~l  306 (533)
                      ++.+.      ...+++  +.|++.++.    ....++++++|.+.+.+|-||.++|.+.++++.+.++++     ++++
T Consensus       154 ~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v  233 (805)
T PLN02724        154 IEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMV  233 (805)
T ss_pred             chhccccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEE
Confidence            76221      112332  566665421    001123578999999999999999955443333322222     3689


Q ss_pred             EEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-----
Q 009517          307 LADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-----  381 (533)
Q Consensus       307 I~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-----  381 (533)
                      ++|.++.-    |..+ .++..    +   ..|   +++.|+.|.++|+.|  +|++++   .+++.+.+.+...     
T Consensus       234 ~vDaaQ~~----g~~p-iDv~~----~---~~D---fl~~S~HK~~GgP~G--~G~L~v---r~~~~~~l~p~~~GGg~~  293 (805)
T PLN02724        234 LLDAAKGC----GTSP-PDLSR----Y---PAD---FVVVSFYKIFGYPTG--LGALLV---RRDAAKLLKKKYFGGGTV  293 (805)
T ss_pred             Eeehhhhc----CCCC-CChhh----c---CCC---EEEEecceeccCCCC--ceEEEE---ehhhhhhhcCCccCCCce
Confidence            99999864    3222 23222    2   345   778899998732445  577776   6776665543210     


Q ss_pred             --------------------ccccCChHHHHHHHHHcCCCCCCChhHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCC--
Q 009517          382 --------------------VNLCSNISGQILASLVMSPPKVGDESYESYCA--ERDGILSSLARRAKTLEDAFNSLE--  437 (533)
Q Consensus       382 --------------------~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~--  437 (533)
                                          ...+++..+..++.++++           +..  .++.+.++..+..+++.+.|.+++  
T Consensus       294 ~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~-----------~l~~ig~~~I~~~~~~L~~~l~~~L~~l~~~  362 (805)
T PLN02724        294 AASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFK-----------LLNRLTISAIAMHTWALTHYVANSLRNLKHG  362 (805)
T ss_pred             EEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHH-----------HHHHhChHHHHHHHHHHHHHHHHHHHhccCC
Confidence                                012344455555555542           112  246677788888999999998885  


Q ss_pred             ----CceEecC---------CceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCC--------
Q 009517          438 ----GITCNKA---------EGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQV--------  496 (533)
Q Consensus       438 ----g~~~~~~---------~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~--------  496 (533)
                          ++.++.+         +++.+.|. +....         +..-....+..++.++||.++.|..+...        
T Consensus       363 ~g~~~v~iyg~~~~~~~~~~r~~ivsFn-v~~~~---------~~~v~~~~v~~l~~~~gI~vR~G~~Ca~~~~~~~lg~  432 (805)
T PLN02724        363 NGAPVCVLYGNHTFKLEFHIQGPIVTFN-LKRAD---------GSWVGHREVEKLASLSGIQLRTGCFCNPGACAKYLGL  432 (805)
T ss_pred             CCCeEEEEcCCCCCCCCcccccCEEEEE-EEcCC---------CCEeCHHHHHHHHHhcCcEEeeccccCchHHHHHcCC
Confidence                4666643         34555442 22000         00011222456778889999999876411        


Q ss_pred             -----------------------C-CCceEEEEec--CCcCcHHHHHHHHHHHH
Q 009517          497 -----------------------P-GTWHFRCTIL--PQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       497 -----------------------~-g~~~iRis~~--~~~e~i~~~~~~l~~~l  524 (533)
                                             . ..+.||+|++  .|.+||+++++.|++..
T Consensus       433 ~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~  486 (805)
T PLN02724        433 SHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSF  486 (805)
T ss_pred             CHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHHHHh
Confidence                                   0 1258999997  89999999999998855

>PLN02880 tyrosine decarboxylase

Probab=99.71  E-value=5.4e-14  Score=147.59  Aligned_cols=329  Identities=12%  Similarity=0.078  Sum_probs=208.3

Q ss_pred             ccCCCcccHHHHHHHHHHHHhhcCCCCCC-----CCEEEcCChHHHHHHHHHHhcc----C------CCCeEEEcCCcCc
Q 009517          162 AYSHSQGIKGLRDTIAAGIEARDGFPADP-----NDIFLTDGASPAVHMMMQLLIR----S------ENDGILCPIPQYP  226 (533)
Q Consensus       162 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~-----~~i~~t~G~~~al~~~~~~l~~----~------~gd~Vlv~~p~~~  226 (533)
                      .|....+..++.+.+.+|+.+.+|.+-..     ..-++|+|+++++..++.+.+.    .      +.-.|++++-+|.
T Consensus       113 ~~~~sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~  192 (490)
T PLN02880        113 SWITSPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHS  192 (490)
T ss_pred             ccccCcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchH
Confidence            34444557899999999999988854221     2357889999998888877641    0      1124667888899


Q ss_pred             chHHHHHHhCCe---EEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcC
Q 009517          227 LYSASIALHGGT---LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEG  303 (533)
Q Consensus       227 ~~~~~~~~~g~~---~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~  303 (533)
                      ....++..+|..   ++.||++..+++.+|++.|+++|++....|..+-+|+.+-...+||.+-+   +++|+++|++||
T Consensus       193 Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDp---l~eI~~i~~~~~  269 (490)
T PLN02880        193 ALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDP---LLELGKIAKSNG  269 (490)
T ss_pred             HHHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCc---HHHHHHHHHHcC
Confidence            999999999984   78899986667899999999999987666656666666677889999988   999999999999


Q ss_pred             CEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHH-HHHHHHHhhh-
Q 009517          304 LVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAE-VREQIYKVAS-  381 (533)
Q Consensus       304 ~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~-~~~~l~~~~~-  381 (533)
                      +|+++|.+|.++....    ..+.....++.  ..|   -+..+++|.+.  ....+|++...  +.. +...+..-.. 
T Consensus       270 iwlHVDaA~gg~~~~~----~~~~~~l~gie--~aD---Sit~d~HKwl~--~P~~~g~llvr--~~~~l~~~~~~~~~Y  336 (490)
T PLN02880        270 MWFHVDAAYAGSACIC----PEYRHYIDGVE--EAD---SFNMNAHKWFL--TNFDCSLLWVK--DRNALIQSLSTNPEF  336 (490)
T ss_pred             CEEEEehhhHHHHHhC----HHHHHHhcCch--hcC---EEEECchhhcC--CCccEEEEEEe--CHHHHHHHHccCHHH
Confidence            9999999998864321    11112222221  123   44778999873  46778888772  322 2222211000 


Q ss_pred             --c-------cc--------cCC---hHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceE
Q 009517          382 --V-------NL--------CSN---ISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITC  441 (533)
Q Consensus       382 --~-------~~--------~~~---~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~  441 (533)
                        .       +.        ++.   .+...+....+            -.+.+.++.++..+.++++.+.|++.+++++
T Consensus       337 l~~~~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~~------------G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el  404 (490)
T PLN02880        337 LKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLY------------GVENLQSYIRNHIKLAKEFEQLVAQDSRFEV  404 (490)
T ss_pred             hcCccccccCCCChhccCcCCCCcccHHHHHHHHHHh------------CHHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence              0       00        000   01111111111            0123344444455788889999988888887


Q ss_pred             ecC-CceeEEecccCCC---HHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec---CCcCcHH
Q 009517          442 NKA-EGAMYLFPRIQLP---EKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL---PQEDKIP  514 (533)
Q Consensus       442 ~~~-~gg~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~---~~~e~i~  514 (533)
                      +.+ ..++.+| ++..+   ....+.       -...+.+++.++..+++.+...    .|..++|+++.   .++++++
T Consensus       405 ~~~~~~~iv~F-r~~~~~~~~~~~~~-------~n~~l~~~l~~~g~~~v~~t~~----~g~~~lR~~~~n~~tt~~di~  472 (490)
T PLN02880        405 VTPRIFSLVCF-RLVPPKNNEDNGNK-------LNHDLLDAVNSSGKIFISHTVL----SGKYVLRFAVGAPLTEERHVT  472 (490)
T ss_pred             ecCCceEEEEE-EEeCCCCChhhHHH-------HHHHHHHHHHhCCCEEEEEEEE----CCEEEEEEEecCCCCCHHHHH
Confidence            665 5444433 23211   000000       0122344555555666665221    34559999995   4568999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 009517          515 AIVTRLTDFHKNFMDK  530 (533)
Q Consensus       515 ~~~~~l~~~l~~~~~~  530 (533)
                      .+++.|.++.+++..+
T Consensus       473 ~~~~~i~~~~~~~~~~  488 (490)
T PLN02880        473 AAWKVLQDEASKLLGK  488 (490)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999988887654

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=99.71  E-value=1.7e-15  Score=153.87  Aligned_cols=314  Identities=13%  Similarity=0.140  Sum_probs=194.4

Q ss_pred             cCCCCHHHHHHHHHHHhcCCCCCccccCCC-------cccHHHHHHHHHHHHhhcCCCCCCCCEEEcCC-hHHHHHHHHH
Q 009517          137 QGLFSADSIERAWQILDQIPGRATGAYSHS-------QGIKGLRDTIAAGIEARDGFPADPNDIFLTDG-ASPAVHMMMQ  208 (533)
Q Consensus       137 ~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~-------~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G-~~~al~~~~~  208 (533)
                      |...|+.|++++.+.+.+..+.+...|...       .-+.+.|+.++++++    . -++++|++|+| +|++++.++.
T Consensus         7 p~~~p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~----~-~~~~~vvf~~gs~T~a~~~~~~   81 (355)
T cd00611           7 PAALPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLN----I-PDNYKVLFLQGGATGQFAAVPL   81 (355)
T ss_pred             CCCCCHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhC----C-CCCceEEEEcCCchHHHHHHHH
Confidence            444589999999888753211112223222       224566777777664    2 14578999988 9999999999


Q ss_pred             HhccC---CCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCC-HHHHHHHHHHHHhcCCCeeEEEEeCCCCCCc
Q 009517          209 LLIRS---ENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLE-TSEVKKQLEAAKAKGITVRALVVINPGNPTG  284 (533)
Q Consensus       209 ~l~~~---~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld-~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG  284 (533)
                      .+. .   +|+.|++ .+.......+++..|.++..++.++..+++ + ++..+..+++      ++++|.+++..|.||
T Consensus        82 ~l~-~~~~~~~~i~~-g~~~~~~~~~a~~~g~~~~~~~~~~~g~~~-~~~~~~~~~~~~------~~~lV~~~h~~t~tG  152 (355)
T cd00611          82 NLL-GDKGTADYVVT-GAWSAKAAKEAKRYGGVVVIVAAKEEGKYT-KIPDVETWDLAP------DAAYVHYCSNETIHG  152 (355)
T ss_pred             hcC-CCCCeEEEEEC-CHHHHHHHHHHHhcCCCcEEEecccccCCC-CCCCHhhcCCCC------CCCEEEEeCCccccc
Confidence            997 4   4444443 232233344678889999988876432231 2 2222233333      799999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEE
Q 009517          285 QVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYME  364 (533)
Q Consensus       285 ~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~  364 (533)
                      +.++        ++++.||+++++|.+++-    |..+ .++..    +     +   +.+.|-.|.+ |++|+  |.++
T Consensus       153 ~~~~--------~i~~~~g~~~~VDa~qs~----g~~~-idv~~----~-----~---~~~ss~~K~l-GP~G~--g~l~  204 (355)
T cd00611         153 VEFD--------EVPDTGGVPLVADMSSNI----LSRP-IDVSK----F-----G---VIYAGAQKNL-GPAGV--TVVI  204 (355)
T ss_pred             EEcc--------eecccCCCeEEEEccccc----cCCC-CCHHH----h-----C---EEEeeccccc-CCCce--EEEE
Confidence            9743        344559999999999985    3222 22222    1     2   3566679987 77774  6666


Q ss_pred             EecCCHHHHHHHHHh-----------hh--ccccCChHHHHHHHHHcCCCCCCChhHHHHHH--HHHHHHHHHHHHHHHH
Q 009517          365 VTGFSAEVREQIYKV-----------AS--VNLCSNISGQILASLVMSPPKVGDESYESYCA--ERDGILSSLARRAKTL  429 (533)
Q Consensus       365 ~~~~~~~~~~~l~~~-----------~~--~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l  429 (533)
                      +   ++++++++...           ..  ...++|..+.+++.++|+          ...+  .++.+.++.++..+++
T Consensus       205 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~----------~l~~~gg~e~i~~~~~~l~~~l  271 (355)
T cd00611         205 V---RKDLLGKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLK----------WLKEQGGVEAMEKRNRQKAQLL  271 (355)
T ss_pred             E---CHHHHhhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHH----------HHHHcCCHHHHHHHHHHHHHHH
Confidence            6   77777665431           11  124556666677766663          1122  2677888899999999


Q ss_pred             HHHHhcCCCce-Ee-cC--CceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEE
Q 009517          430 EDAFNSLEGIT-CN-KA--EGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCT  505 (533)
Q Consensus       430 ~~~L~~~~g~~-~~-~~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis  505 (533)
                      ++.|+++||+. .. .+  ..+..+.+.++  .          ......+ ...+.+.|+.+.+|..   ..  +.||+|
T Consensus       272 ~~~l~~~~gl~~~~~~~~~rs~~vvsf~~~--~----------~~l~~~~-~~~~~r~G~~~~~~~~---~~--g~vR~S  333 (355)
T cd00611         272 YDTIDNSNGFYRGPVDKRARSRMNVPFRLG--K----------EELEKEF-LKEAEAAGMIGLKGHR---SV--GGIRAS  333 (355)
T ss_pred             HHHHHhCccccccCCCHHHcCceEEEEEcC--C----------hhhhHHH-HHHHHHCCCcccCCCc---cc--CeEEEE
Confidence            99999998862 21 11  22221221122  1          0001222 1345678998666543   12  389999


Q ss_pred             ec--CCcCcHHHHHHHHHHH
Q 009517          506 IL--PQEDKIPAIVTRLTDF  523 (533)
Q Consensus       506 ~~--~~~e~i~~~~~~l~~~  523 (533)
                      +.  ++++||+++++.|+++
T Consensus       334 ~~~~nt~edi~~l~~al~~~  353 (355)
T cd00611         334 IYNALSLEGVQALADFMKEF  353 (355)
T ss_pred             ccCCCCHHHHHHHHHHHHHH
Confidence            96  7999999999988874

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]

Probab=99.71  E-value=8.6e-15  Score=135.21  Aligned_cols=322  Identities=14%  Similarity=0.114  Sum_probs=201.8

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccH----HHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCC
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIK----GLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND  216 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~----~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd  216 (533)
                      +|+++++..+++++... ....-.-.-|..    .|...||++.+        .|+.++.+.+-.|...++.++. .|.|
T Consensus        83 hPeii~a~~~aleeyGa-GlssvrfIcGtq~iHk~LE~kiAqfh~--------rED~ilypscfdANag~feail-~ped  152 (417)
T KOG1359|consen   83 HPEIINAGQKALEEYGA-GLSSVRFICGTQDIHKLLESKIAQFHG--------REDTILYPSCFDANAGAFEAIL-TPED  152 (417)
T ss_pred             ChHHHHHHHHHHHHhCC-CccceeEEecchHHHHHHHHHHHHHhC--------CCceEEeccccccchHHHHHhc-Chhh
Confidence            68999999998887432 222222233444    45555555543        5677777888888888888888 7888


Q ss_pred             eEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHH
Q 009517          217 GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIV  296 (533)
Q Consensus       217 ~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~  296 (533)
                      .|.-..-.+....+..+++.      .+     -.+|+-.++..+.++.+.  +-++|+....-...|-+.|   +++|.
T Consensus       153 AvfSDeLNhASIIdGirLck------ry-----~h~dv~~l~~~l~~a~k~--r~klv~TDg~FSMDGdiaP---l~ei~  216 (417)
T KOG1359|consen  153 AVFSDELNHASIIDGIRLCK------RY-----RHVDVFDLEHCLISACKM--RLKLVVTDGVFSMDGDIAP---LEEIS  216 (417)
T ss_pred             hhhccccccchhhhhhHHHh------hh-----ccchhHHHHHHHHHhhhh--eEEEEEecceeccCCCccc---HHHHH
Confidence            88888888877777666654      11     146777788776653211  4566655566788899988   99999


Q ss_pred             HHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHH
Q 009517          297 DFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQI  376 (533)
Q Consensus       297 ~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l  376 (533)
                      +++++||.++++||++..+.++....  ...+.    .+...+ ..|+..+++|++ |  |.-.||..+   |+.+++.+
T Consensus       217 ~La~kYgaLlfiDecHaTgf~G~tGr--Gt~E~----~~vm~~-vdiinsTLgKAl-G--ga~GGyttg---p~~li~ll  283 (417)
T KOG1359|consen  217 QLAKKYGALLFIDECHATGFFGETGR--GTAEE----FGVMGD-VDIINSTLGKAL-G--GASGGYTTG---PKPLISLL  283 (417)
T ss_pred             HHHHhcCcEEEEeecccceeecCCCC--ChHHH----hCCCCc-ceehhhhhhhhh-c--CCCCCCccC---ChhHHHHH
Confidence            99999999999999998877743211  11121    111123 237789999998 4  677799988   99999888


Q ss_pred             HHhhhcc--ccCChHH-HHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecc
Q 009517          377 YKVASVN--LCSNISG-QILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPR  453 (533)
Q Consensus       377 ~~~~~~~--~~~~~~~-q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~  453 (533)
                      +.-...+  ++.-+++ .-.+..++.          .. -.-.....+.+.+.+.+++.++.- |+.+....--+.-.. 
T Consensus       284 rqr~RpylFSnslppavV~~a~ka~d----------ll-m~s~~~i~~~~a~~qrfr~~me~a-GftIsg~~hPI~pv~-  350 (417)
T KOG1359|consen  284 RQRSRPYLFSNSLPPAVVGMAAKAYD----------LL-MVSSKEIQSRQANTQRFREFMEAA-GFTISGASHPICPVM-  350 (417)
T ss_pred             HhcCCceeecCCCChhhhhhhHHHHH----------HH-HhhHHHHHHHHHHHHHHHHHHHhc-CceecCCCCCcccee-
Confidence            7654322  2221211 111122211          11 111334445566666777776655 877654221111110 


Q ss_pred             cCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 009517          454 IQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~~  527 (533)
                      +. ...           ....+..++| +.||+|..-+..-.++|...||+.++  +++|+|+++++++.++.+.+
T Consensus       351 lG-da~-----------lA~~~ad~lL-k~Gi~Vigfs~PvVP~gkariRVqiSAaHt~edid~~i~Af~~vgr~~  413 (417)
T KOG1359|consen  351 LG-DAR-----------LASKMADELL-KRGIYVIGFSYPVVPKGKARIRVQISAAHTEEDIDRLIEAFSEVGRFL  413 (417)
T ss_pred             cc-cHH-----------HHHHHHHHHH-hcCceEEeecCCcCCCCceEEEEEEehhcCHHHHHHHHHHHHHHHHhh
Confidence            11 000           1233455666 47999985444344667777888884  89999999999999887654

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=99.71  E-value=2e-14  Score=148.08  Aligned_cols=341  Identities=10%  Similarity=0.002  Sum_probs=210.9

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEE--cCChHHHHHHHHHHhcc------
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFL--TDGASPAVHMMMQLLIR------  212 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~--t~G~~~al~~~~~~l~~------  212 (533)
                      .+++.+.+...+..... ....   .....++.+.+.+++.+.+|.+...+++..  |+|++|++..++..+..      
T Consensus        54 ~p~~~~~~~~~l~~~~~-np~s---~~~~~~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~  129 (431)
T TIGR01788        54 EPEARKLMDETINKNMI-DKDE---YPQTAEIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRM  129 (431)
T ss_pred             CHHHHHHHHHHHhcCCC-Cccc---CccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHH
Confidence            46677777777764322 1222   222347777777777777774311145544  89999999998866531      


Q ss_pred             -CCC-----CeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccC
Q 009517          213 -SEN-----DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV  286 (533)
Q Consensus       213 -~~g-----d~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~  286 (533)
                       ..|     ..|+++.-.|..+..+++..|.++..+|+++ +++.+|++.|+++|++      ++.+|+++..+|.||.+
T Consensus       130 ~~~g~~~~~~~ii~s~~~H~sv~ka~~~lg~~v~~i~~d~-~~~~vd~~~L~~~i~~------~t~lV~~t~g~t~tG~i  202 (431)
T TIGR01788       130 EAAGKPTDKPNLVMGSNVQVCWEKFARYFDVELREVPMDP-GRYVIDPEQVVEAVDE------NTIGVVCILGTTYTGEY  202 (431)
T ss_pred             HhcCCCCCCcEEEEcCcchHHHHHHHHHcCceeEEEecCC-CceeeCHHHHHHHHhh------CCeEEEEEeCCCCCccc
Confidence             011     3688999999999999999999999999986 3467999999999987      78889999999999999


Q ss_pred             CCHHHHHHHHHHHHHc------CCEEEEccccccccc---cCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCC
Q 009517          287 LAEENQRAIVDFCKKE------GLVLLADEVYQENVY---VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG  357 (533)
Q Consensus       287 ~s~~~l~~i~~l~~~~------~~~lI~De~y~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G  357 (533)
                      .|   +++|+++|+++      |+++++|.+|.++..   .+..+ ..+    .     ..... -+..|.+|.+.|+. 
T Consensus       203 dp---i~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~-~~~----~-----~~~~D-Sis~s~HK~~~~P~-  267 (431)
T TIGR01788       203 ED---VKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLE-WDF----R-----LPRVK-SINVSGHKYGLVYP-  267 (431)
T ss_pred             CC---HHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCch-hhc----C-----CCCce-EEEECchhccCCCC-
Confidence            98   99999999999      999999999997442   12111 111    0     11222 34668899653444 


Q ss_pred             CeeEEEEEecCCHH-HHHHHHHh---h-----hccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 009517          358 KRGGYMEVTGFSAE-VREQIYKV---A-----SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKT  428 (533)
Q Consensus       358 ~riG~v~~~~~~~~-~~~~l~~~---~-----~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (533)
                       .+|++.+  .+++ +...+...   .     ..+...+..+..++..++.       ....-..-++++.++..+..++
T Consensus       268 -g~G~l~~--r~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~-------l~~lG~~G~~~i~~~~~~la~~  337 (431)
T TIGR01788       268 -GVGWVIW--RDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYN-------FLRLGREGYRKIMQNSLDVARY  337 (431)
T ss_pred             -CcEEEEE--eChHHcchhheecccccCCCCCCcceecCchHHHHHHHHHH-------HHHhcHHHHHHHHHHHHHHHHH
Confidence             4677776  2333 22222110   0     0011112221111111111       0000113356677778888899


Q ss_pred             HHHHHhcCCCceEecC--CceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEe
Q 009517          429 LEDAFNSLEGITCNKA--EGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTI  506 (533)
Q Consensus       429 l~~~L~~~~g~~~~~~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~  506 (533)
                      +.+.|++.++++++.+  ..++..| ++.....       .+. +..+ +.+.|.++|+.+..-..-..-.|..++|+++
T Consensus       338 l~~~L~~~~~~el~~~~~~~~iV~F-r~~~~~~-------~~~-~~~~-l~~~L~~~G~~~~~~~~p~~~~~~~~lR~~~  407 (431)
T TIGR01788       338 LAEEIAKLGPFEIISDGSGIPLVAF-KLKDDAD-------PGY-TLYD-LSHRLRERGWIVPAYTLPKNAEDIVVMRIVV  407 (431)
T ss_pred             HHHHHHhCCCEEEeeCCCCceEEEE-EeCCCCC-------CCc-CHHH-HHHHHHHCCCcccCCCCCCccCCeEEEEEEe
Confidence            9999999988988764  5555544 2221000       001 1222 3456677898653211111012344789998


Q ss_pred             c--CCcCcHHHHHHHHHHHHHHH
Q 009517          507 L--PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       507 ~--~~~e~i~~~~~~l~~~l~~~  527 (533)
                      .  .+.+.++++++.|++++..+
T Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~  430 (431)
T TIGR01788       408 REGFSRDLAELLIEDIEAALAYL  430 (431)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHhh
Confidence            4  67788999999999887654

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=99.70  E-value=3.9e-14  Score=143.60  Aligned_cols=325  Identities=15%  Similarity=0.176  Sum_probs=206.6

Q ss_pred             cccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHH-HHHhCCeE
Q 009517          161 GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS-IALHGGTL  239 (533)
Q Consensus       161 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~-~~~~g~~~  239 (533)
                      ..|.....+.+|.++++++++        .+.++.+++|+.|+.+++...+ ++||+|  +..+|..-... +...|+..
T Consensus        72 d~Yagd~s~~~LE~~vAe~lG--------~e~aV~v~sGTaAl~ll~~l~v-~pGd~V--p~n~~f~Tt~ahI~~~Ga~f  140 (460)
T PRK13237         72 EAYAGSRNFYHLEETVQEYYG--------FKHVVPTHQGRGAENLLSRIAI-KPGQYV--PGNMYFTTTRYHQELNGGIF  140 (460)
T ss_pred             hhhcCCCcHHHHHHHHHHHHC--------CCeEEEeCCHHHHHHHHHHhCC-CCcCEE--CCccchHhhHHHHHhCCcEE
Confidence            458877779999999999975        4569999999999998766666 789965  55545444433 67778865


Q ss_pred             EEEecC--------CCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCC-ccCCCHHHHHHHHHHHHHcCCEEEEcc
Q 009517          240 VPYYLD--------EATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT-GQVLAEENQRAIVDFCKKEGLVLLADE  310 (533)
Q Consensus       240 ~~v~~~--------~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPt-G~~~s~~~l~~i~~l~~~~~~~lI~De  310 (533)
                      +.+..+        ...++.+|++.|+++|++..  .++++.|.+.+++|-. |...|.+++++|.++|++||+.||+|.
T Consensus       141 vDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~--~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~Da  218 (460)
T PRK13237        141 VDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVG--AENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDA  218 (460)
T ss_pred             EeeecccccccccCCCCCCCcCHHHHHHHhcccc--CCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEEC
Confidence            555322        22367899999999998631  1255667778888877 799999999999999999999999999


Q ss_pred             cccc----ccc--cCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh---
Q 009517          311 VYQE----NVY--VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS---  381 (533)
Q Consensus       311 ~y~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~---  381 (533)
                      +...    |+-  .++-...++..+..+++. ..|   ++..|++|.+ +. +. .|+++.  .++++.++++.+.-   
T Consensus       219 Ara~gna~fI~~re~~y~~~~i~ei~~e~~s-~aD---~~t~S~~K~~-~~-~~-GG~i~t--~D~eL~~~~r~~~~~~e  289 (460)
T PRK13237        219 TRCVENAYFIKEREEGYQDKSIKEIVHEMFS-YAD---GCTMSGKKDC-LV-NI-GGFLAM--NDEELFDEAKELVVVYE  289 (460)
T ss_pred             cchhcChhhhcccccccCCCcHhHHhhhccC-cCc---EEEEeCCCCC-CC-CC-ceEEEE--CCHHHHHHHHHhccccC
Confidence            8752    110  011122344455555532 234   5577899987 32 22 477776  48889888877631   


Q ss_pred             --ccccC-ChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccC--C
Q 009517          382 --VNLCS-NISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQ--L  456 (533)
Q Consensus       382 --~~~~~-~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~--~  456 (533)
                        .+++. +.--..+++..|..          +.++  ...+.-.+..++|.+.|.+. |+.++.|.||.-+|++..  +
T Consensus       290 G~~tygg~~grd~~alAvgl~E----------~~~~--~y~~~ri~~~~~l~~~L~~~-Gvpv~~p~ggH~v~vda~~~l  356 (460)
T PRK13237        290 GMPSYGGMAGRDMEAMAIGIEE----------SVQY--EYIEHRVGQVRYLGEKLLAA-GVPIVEPVGGHAVFLDARRFL  356 (460)
T ss_pred             CCcCCCChhhhHHHHHHhHHHh----------hchH--HHHHHHHHHHHHHHHHHHHC-CCceecCCCceEEEEEhHHhC
Confidence              12221 11112222222321          1111  22222234557888999887 999999999988887543  1


Q ss_pred             CHHHHHHHHhcCCCChHHHHHHHHHccceEEE-cCCC-CCCC--CC------CceEEEEec---CCcCcHHHHHHHHHHH
Q 009517          457 PEKAIKAAEAEKTVPDAFYCRRLLNATGIVLV-PGSG-FGQV--PG------TWHFRCTIL---PQEDKIPAIVTRLTDF  523 (533)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~-pg~~-f~~~--~g------~~~iRis~~---~~~e~i~~~~~~l~~~  523 (533)
                      |.-     ..... ....++..+..+.||--. -|+. ++..  .+      -..+|+++.   -|.+.++..+++|..+
T Consensus       357 ph~-----~~~~~-p~~al~~~ly~~~GiR~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~  430 (460)
T PRK13237        357 PHL-----PQDQF-PAQALAAELYIESGVRSMERGIVSAGRDPKTGENHYPKLELVRLTIPRRVYTYAHMDVVADSVIKL  430 (460)
T ss_pred             CCC-----CcccC-hHHHHHHHHHHHhCcCeEeecceecccCCCCCccCCCccceeeeccccccccHHHHHHHHHHHHHH
Confidence            110     00011 233445566777887543 2222 2211  11      137999993   6778899999999887


Q ss_pred             HHH
Q 009517          524 HKN  526 (533)
Q Consensus       524 l~~  526 (533)
                      .++
T Consensus       431 ~~~  433 (460)
T PRK13237        431 YKH  433 (460)
T ss_pred             HHh
Confidence            765

>PLN02590 probable tyrosine decarboxylase

Probab=99.70  E-value=1.5e-13  Score=144.29  Aligned_cols=349  Identities=11%  Similarity=0.067  Sum_probs=217.3

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCC-----CCCEEEcCChHHHHHHHHHHhccC--
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPAD-----PNDIFLTDGASPAVHMMMQLLIRS--  213 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~-----~~~i~~t~G~~~al~~~~~~l~~~--  213 (533)
                      |..++..+.....+.   ....|....+..++.+.+.+|+.+.+|.+-.     ...=++++|+++++..++.+.+..  
T Consensus       143 ~~~~lgd~l~sa~n~---~~~~~~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~  219 (539)
T PLN02590        143 VAGFLGEMLNAGLSV---VGFTWLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRIL  219 (539)
T ss_pred             HHHHHHHHHHHhccc---ccCCcccCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHH
Confidence            445555444333321   2344555666889999999999999885532     123577899999998887776410  


Q ss_pred             --------CCCeEEEcCCcCcchHHHHHHhCC---eEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCC
Q 009517          214 --------ENDGILCPIPQYPLYSASIALHGG---TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP  282 (533)
Q Consensus       214 --------~gd~Vlv~~p~~~~~~~~~~~~g~---~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NP  282 (533)
                              +.-.|++++.+|.....++..+|.   .++.||++..+++.+|++.|+++|++....|..+-+|+.+-....
T Consensus       220 ~~~g~~~~~~~vvy~S~~aH~Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~  299 (539)
T PLN02590        220 KKVGKTLLPQLVVYGSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTS  299 (539)
T ss_pred             hhhcccCCCCEEEEecCCchHHHHHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCC
Confidence                    112566778889999999999998   588999986667899999999999887666656666666677888


Q ss_pred             CccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEE
Q 009517          283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGY  362 (533)
Q Consensus       283 tG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~  362 (533)
                      ||.+=+   +++|+++|++||+|+.+|.+|.++..-.    .....+...+.  ..|  -| ...++|.+.  ..+.+|.
T Consensus       300 tGaiDp---l~~Ia~i~~~~g~WlHVDaA~GG~al~~----~~~r~~~~Gie--~AD--Si-t~D~HK~l~--~p~~cg~  365 (539)
T PLN02590        300 SAAVDP---LVPLGNIAKKYGIWLHVDAAYAGNACIC----PEYRKFIDGIE--NAD--SF-NMNAHKWLF--ANQTCSP  365 (539)
T ss_pred             CcccCC---HHHHHHHHHHhCCeEEEecchhhhhhcC----hhhHHHhcCCc--cCC--EE-EECchhhcC--cCcCEEE
Confidence            999866   9999999999999999999999865321    12223333331  122  23 568899773  5678888


Q ss_pred             EEEecCCH-HHHHHHHH---hhh---------------ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHH
Q 009517          363 MEVTGFSA-EVREQIYK---VAS---------------VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLA  423 (533)
Q Consensus       363 v~~~~~~~-~~~~~l~~---~~~---------------~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~  423 (533)
                      +.+  .++ .+.+.+..   +..               ...++-.+  .++..++.       ....-.+-++++.++..
T Consensus       366 llv--r~~~~l~~a~~~~~~YL~~~~~~~~~~~d~~d~~i~lsRr~--raLklW~~-------lr~~G~~G~~~~i~~~~  434 (539)
T PLN02590        366 LWV--KDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRF--RSLKLWMV-------LRLYGSENLRNFIRDHV  434 (539)
T ss_pred             EEe--cCHHHHHHHhhcCHHHhCCcccccccCCCccccCCCCCCch--HHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence            776  233 23333211   000               00011111  11211110       00011234566777778


Q ss_pred             HHHHHHHHHHhcCCCceEecC-CceeEEecccCCCH---HHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCC
Q 009517          424 RRAKTLEDAFNSLEGITCNKA-EGAMYLFPRIQLPE---KAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGT  499 (533)
Q Consensus       424 ~~~~~l~~~L~~~~g~~~~~~-~gg~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~  499 (533)
                      +..+++.+.|++.|+++++.+ +-+..+| ++..+.   ...+.       ....+.+++.+.-.+++.+..    -.|.
T Consensus       435 ~lA~~~~~~l~~~~~fel~~~~~l~iVcF-r~~~~~~~~~~~~~-------ln~~l~~~l~~~G~~~vs~t~----~~g~  502 (539)
T PLN02590        435 NLAKHFEDYVAQDPSFEVVTTRYFSLVCF-RLAPVDGDEDQCNE-------RNRELLAAVNSTGKIFISHTA----LSGK  502 (539)
T ss_pred             HHHHHHHHHHhcCCCeEEecCCceEEEEE-EecCCCCCHHHHHH-------HHHHHHHHHHhCCCEEEEeeE----ECCE
Confidence            888899999998888987665 3333332 232110   00000       012333344433344455422    2344


Q ss_pred             ceEEEEec---CCcCcHHHHHHHHHHHHHHHHH
Q 009517          500 WHFRCTIL---PQEDKIPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       500 ~~iRis~~---~~~e~i~~~~~~l~~~l~~~~~  529 (533)
                      .++|+++.   .++++|+.+++.|.+..+++.+
T Consensus       503 ~~lR~~i~n~~T~~~dv~~~~~~i~~~a~~~~~  535 (539)
T PLN02590        503 FVLRFAVGAPLTEEKHVTEAWQIIQKHASKFTR  535 (539)
T ss_pred             EEEEEEecCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            58999994   6778899999999988776643

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=99.69  E-value=1.9e-14  Score=131.57  Aligned_cols=306  Identities=15%  Similarity=0.195  Sum_probs=206.0

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCC
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEAT  248 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~  248 (533)
                      +..+.+.+++|++        .|.+-+|+|+.++-..++.+++ ++||.|++....+....-+++.+|.++..+|-...+
T Consensus        63 I~~F~~dlaeFlg--------~D~~R~t~GARe~KfavMhal~-~~gd~vV~D~~aHYttyvAAEragl~v~eVp~tg~P  133 (382)
T COG1103          63 IKDFLEDLAEFLG--------MDEVRVTAGAREAKFAVMHALC-KEGDWVVVDSLAHYTTYVAAERAGLNVAEVPNTGYP  133 (382)
T ss_pred             HHHHHHHHHHHhC--------CceeeecccchhhHHHHHHHhc-cCCCEEEEcCcchHHHHHHHHhcCCeEEecCCCCCC
Confidence            6778888999975        6789999999999999999999 899999999988777667889999999999977778


Q ss_pred             CCCCCHHHHHHHHHHHHhcC-CCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHH
Q 009517          249 GWGLETSEVKKQLEAAKAKG-ITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFK  327 (533)
Q Consensus       249 ~~~ld~~~l~~~i~~~~~~g-~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~  327 (533)
                      .|.++++...+.|.+..+.+ .++.+.++++|...-|...+   -++++++|+++++.++...+|+-...     ..+. 
T Consensus       134 ey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~D---akkva~ic~e~gvPlllN~AYt~Grm-----pvs~-  204 (382)
T COG1103         134 EYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLAD---AKKVAKICREYGVPLLLNCAYTVGRM-----PVSG-  204 (382)
T ss_pred             ceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchh---hHHHHHHHHHcCCceEeecceeeccc-----cccc-
Confidence            89999999999998875544 56888888999877888766   89999999999999999999986222     2222 


Q ss_pred             HHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhc--------cccCChHHHHHHHHHcC
Q 009517          328 KVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASV--------NLCSNISGQILASLVMS  399 (533)
Q Consensus       328 ~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~--------~~~~~~~~q~a~~~~L~  399 (533)
                         .+.   ..|   ++++|=+|+++  +.-++|.+..   ..++.+.+-+....        -.+...-+.-++.. + 
T Consensus       205 ---ke~---g~D---FiVgSGHKsmA--As~PiGvl~~---~eE~ae~V~r~Sg~~~~~KEvellGCT~rGapivTl-m-  268 (382)
T COG1103         205 ---KEI---GAD---FIVGSGHKSMA--ASAPIGVLAM---SEEWAEIVLRRSGRAFPKKEVELLGCTVRGAPIVTL-M-  268 (382)
T ss_pred             ---ccc---CCC---EEEecCccchh--ccCCeeEEee---hhHHHHHHHhhcccccccceeeeecccccCchHHHH-H-
Confidence               222   345   77899999994  4669999887   78877766443210        01111222111111 1 


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEe--cCCceeEEecccCCCHHHHHHHHhcCCCChHHHHH
Q 009517          400 PPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCN--KAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCR  477 (533)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~--~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (533)
                            ++|....+.+++.-++.+ +..++.+.|+++.|+.-.  +|..-=.++  +..|.- ..-+++.  ...-.|+.
T Consensus       269 ------ASfP~V~eRVkrWdeEv~-kaR~fv~elEkigg~~qlG~rPk~HdLm~--Fetp~f-~eIakk~--~r~gyFlY  336 (382)
T COG1103         269 ------ASFPHVVERVKRWDEEVE-KARWFVAELEKIGGVKQLGERPKNHDLMK--FETPVF-HEIAKKH--KRKGYFLY  336 (382)
T ss_pred             ------hcCHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhHHHhCCCCcccceee--ecCchH-HHHHHhC--cCCceeeH
Confidence                  123233333333333333 344677888887444422  232211111  233321 1111111  11223445


Q ss_pred             HHHHccceE-EEcCCCCCCCCCCceEEEEe-cCCcCcHHHHHHHHHHHHHHH
Q 009517          478 RLLNATGIV-LVPGSGFGQVPGTWHFRCTI-LPQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       478 ~ll~~~gV~-v~pg~~f~~~~g~~~iRis~-~~~~e~i~~~~~~l~~~l~~~  527 (533)
                      +-|+++||. +.||.       ..+|.+|. +++.|+++..+++++++++++
T Consensus       337 ~ELK~RgI~GI~~G~-------Tk~~K~svyGl~~Eqve~V~~afkeI~eky  381 (382)
T COG1103         337 EELKKRGIHGIQPGQ-------TKYFKLSVYGLSWEQVEYVVDAFKEIAEKY  381 (382)
T ss_pred             HHHHhcCccccccCc-------eeEEEEEeecCCHHHHHHHHHHHHHHHHhc
Confidence            678888885 44432       23899998 599999999999999988764

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=99.69  E-value=7.2e-15  Score=149.01  Aligned_cols=320  Identities=15%  Similarity=0.123  Sum_probs=199.4

Q ss_pred             cCCCCHHHHHHHHHHHhcCCCCCccccCCC---cccHHHHHHHHHHHHhhcCCCCCCCCEEEc-CChHHHHHHHHHHhcc
Q 009517          137 QGLFSADSIERAWQILDQIPGRATGAYSHS---QGIKGLRDTIAAGIEARDGFPADPNDIFLT-DGASPAVHMMMQLLIR  212 (533)
Q Consensus       137 ~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~---~G~~~lr~aia~~~~~~~g~~~~~~~i~~t-~G~~~al~~~~~~l~~  212 (533)
                      |...|+.|++++.+.+.+....+...+...   .-..++.+.+.+.+.+.++.+ +..+|+++ .+++.+++.++..++ 
T Consensus        11 P~~~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~-~~~~v~~~~gsgt~~~Ea~~~nl~-   88 (360)
T PRK05355         11 PAMLPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIP-DNYKVLFLQGGASLQFAMVPMNLL-   88 (360)
T ss_pred             CCCCCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCC-CCcEEEEEcCCchHHHHHHHHhcC-
Confidence            444589999999888743211111222111   112355555555555555531 22356555 667888999999998 


Q ss_pred             CCCCeEEEcCCcCcc--hHHHHHHhCCeEEEEecCCCCCCCCCHHHHHH-HHHHHHhcCCCeeEEEEeCCCCCCccCCCH
Q 009517          213 SENDGILCPIPQYPL--YSASIALHGGTLVPYYLDEATGWGLETSEVKK-QLEAAKAKGITVRALVVINPGNPTGQVLAE  289 (533)
Q Consensus       213 ~~gd~Vlv~~p~~~~--~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~-~i~~~~~~g~~~~~iil~~p~NPtG~~~s~  289 (533)
                      .+|+++++..-+..+  +..+++.+|.. ..+..++..++ .+..++++ .+++      ++++|.+++-.|.||+..+ 
T Consensus        89 ~~g~~~l~i~~G~fg~r~~~~a~~~g~~-~~~~~~~~~g~-~~~~~~~~~~l~~------~~~~V~~th~eTstGv~~~-  159 (360)
T PRK05355         89 GGGKKADYVDTGSWSKKAIKEAKKYGEV-NVAASSEDDGF-TYIPPLDEWQLSD------DAAYVHYTSNETIDGTEFH-  159 (360)
T ss_pred             CCCCeEEEEECCHHHHHHHHHHHHhCCc-eEEecccccCC-CCCCChhhccCCC------CCCEEEEccCCCcceEecC-
Confidence            788888877766554  35577778865 55555432232 23333333 5654      6899999999999999984 


Q ss_pred             HHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCC
Q 009517          290 ENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFS  369 (533)
Q Consensus       290 ~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~  369 (533)
                       .+.+|      +|+++|+|.+.+-    |..+ .++.    ++     +   +++.|-.|.+ |++|+  |++.+   +
T Consensus       160 -~i~~i------~g~l~vVDavss~----g~~~-idv~----~~-----d---~~~~ssqK~l-gP~Gl--g~l~~---s  209 (360)
T PRK05355        160 -ELPDT------GDVPLVADMSSDI----LSRP-IDVS----KF-----G---LIYAGAQKNI-GPAGL--TIVIV---R  209 (360)
T ss_pred             -ccccc------CCCcEEEEcCccc----cCcc-CCHH----Hc-----c---EEEEeccccc-cCCce--EEEEE---C
Confidence             25555      8999999999975    3222 2221    11     2   6788889998 77775  55655   7


Q ss_pred             HHHHHHHHH-h----------h--hccccCChHHHHHHHHHcCCCCCCChhHHHHHH--HHHHHHHHHHHHHHHHHHHHh
Q 009517          370 AEVREQIYK-V----------A--SVNLCSNISGQILASLVMSPPKVGDESYESYCA--ERDGILSSLARRAKTLEDAFN  434 (533)
Q Consensus       370 ~~~~~~l~~-~----------~--~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~  434 (533)
                      +++++.+.+ .          .  ...+++|....+++.++|+.          ..+  .++.+.++.++..+++++.|+
T Consensus       210 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~----------i~~~gG~e~i~~r~~~l~~~l~~~l~  279 (360)
T PRK05355        210 EDLLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKW----------LKEQGGVAAMEKRNQEKAALLYDAID  279 (360)
T ss_pred             HHHHhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHH----------HHHccCHHHHHHHHHHHHHHHHHHHH
Confidence            777766544 1          1  12356677777777777741          122  267788889999999999999


Q ss_pred             cCCCceEecC---Cc-eeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--C
Q 009517          435 SLEGITCNKA---EG-AMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--P  508 (533)
Q Consensus       435 ~~~g~~~~~~---~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~  508 (533)
                      +++.+....+   .. ....   +..|...          ....+ ...+.++|+.+.+|..   ..  +.||+|+.  +
T Consensus       280 ~~~~~~~~~~~~~rs~~v~s---f~~~~~~----------~~~~~-~~~~~~~Gi~~~~~~~---~~--g~vRiS~~~~n  340 (360)
T PRK05355        280 SSDFYRNPVAPEDRSRMNVP---FTLADEE----------LDKKF-LAEAKAAGLVGLKGHR---SV--GGMRASIYNAM  340 (360)
T ss_pred             hCCCcccCCChhhcCCcEEE---EEcCChH----------HHHHH-HHHHHHCCCcccCCCC---cc--CcEEEECCCCC
Confidence            9842222111   12 2222   2233221          11222 2345678999876653   12  38999996  8


Q ss_pred             CcCcHHHHHHHHHHHHHH
Q 009517          509 QEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       509 ~~e~i~~~~~~l~~~l~~  526 (533)
                      +.++|+.+++.|++++++
T Consensus       341 t~eei~~l~~~l~~~~~~  358 (360)
T PRK05355        341 PLEGVQALVDFMKEFERR  358 (360)
T ss_pred             CHHHHHHHHHHHHHHHHh
Confidence            899999999999987764

>PRK02769 histidine decarboxylase; Provisional

Probab=99.68  E-value=9.2e-14  Score=141.27  Aligned_cols=292  Identities=12%  Similarity=0.012  Sum_probs=188.1

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCE--EEcCChHHHHHHHHHHhcc-CCCCeEEEcCCcCcchHHHHHHhCCeEEEEecC
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDI--FLTDGASPAVHMMMQLLIR-SENDGILCPIPQYPLYSASIALHGGTLVPYYLD  245 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i--~~t~G~~~al~~~~~~l~~-~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~  245 (533)
                      ..++.+.+.+++.+.+|  .+++++  ++|+|+||++..++...+. .++++|++++-.|.....+++..|.+...++.+
T Consensus        63 ~~~~e~~~~~~~a~l~g--~~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~Sv~ka~~~lg~~~~~V~~~  140 (380)
T PRK02769         63 SFDFERDVMNFFAELFK--IPFNESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSVSKIARLLRIKSRVITSL  140 (380)
T ss_pred             hHHHHHHHHHHHHHHhC--CCCCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEeCCCceehHHHHHHHcCCCCceeccC
Confidence            44566666666666666  344444  8899999998877665531 367899999999999999999999998888886


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcC---CEEEEccccccccccCCCC
Q 009517          246 EATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEG---LVLLADEVYQENVYVPEKK  322 (533)
Q Consensus       246 ~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~---~~lI~De~y~~~~~~~~~~  322 (533)
                      +  ++.+|+++|+++|++.   +.++.+|+++.++|+||.+-+   +++|+++|+++|   +++++|.+|.++...-...
T Consensus       141 ~--~g~id~~~L~~~i~~~---~~~t~lvv~t~gtt~tG~idp---i~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~  212 (380)
T PRK02769        141 P--NGEIDYDDLISKIKEN---KNQPPIIFANIGTTMTGAIDN---IKEIQEILKKIGIDDYYIHADAALSGMILPFVNN  212 (380)
T ss_pred             C--CCcCcHHHHHHHHHhC---CCCcEEEEEEeCCCCCcccCC---HHHHHHHHHHhCCCceEEEEEecccceeecccCc
Confidence            4  4579999999999873   335889999999999999988   899999999998   6999999998754310000


Q ss_pred             cccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhh------hcc--ccCChHHHHHH
Q 009517          323 FHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA------SVN--LCSNISGQILA  394 (533)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~------~~~--~~~~~~~q~a~  394 (533)
                      ...+ .+       ..+. ..+..|.+|.+ + .-..+|+++.   .++....+....      ..+  .+.+.....++
T Consensus       213 ~~~~-d~-------~~~v-Dsis~s~HK~~-~-~P~g~G~l~~---r~~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~l  278 (380)
T PRK02769        213 PPPF-SF-------ADGI-DSIAISGHKFI-G-SPMPCGIVLA---KKKYVERISVDVDYIGSRDQTISGSRNGHTALLL  278 (380)
T ss_pred             cccC-Cc-------cCCC-CEEEECCcccC-C-CCCCcEEEEE---ehhhhhhcccCccccCCCCCCccCCCCcHHHHHH
Confidence            0000 10       0111 24567889976 3 2255788877   555555442110      011  11222333333


Q ss_pred             HHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEec-CCceeEEecccCCCHHHHHHHHhcCCCChH
Q 009517          395 SLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNK-AEGAMYLFPRIQLPEKAIKAAEAEKTVPDA  473 (533)
Q Consensus       395 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (533)
                      -.+|+..         -.+..+++.++..+..+++.+.|++. |+.... |.....+|   +.|.             + 
T Consensus       279 w~aL~~l---------g~~G~~~~~~~~~~la~~l~~~L~~~-g~~~~~~p~~~~v~f---~~~~-------------~-  331 (380)
T PRK02769        279 WAAIRSL---------GSKGLRQRVQHCLDMAQYAVDRLQAN-GIPAWRNPNSITVVF---PCPS-------------E-  331 (380)
T ss_pred             HHHHHHH---------CHHHHHHHHHHHHHHHHHHHHHHHhC-CCEEEcCCCceEEEE---cCCC-------------H-
Confidence            3333210         01235667778888888999999886 777554 55443333   3221             1 


Q ss_pred             HHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHHH
Q 009517          474 FYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       474 ~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~  525 (533)
                          .+.  +|..+.+      ...  ++||.+.  ++.+.|+++++.|...+.
T Consensus       332 ----~~~--~~w~l~~------~~~--~~hi~~~~~~~~~~~~~f~~dl~~~~~  371 (380)
T PRK02769        332 ----RIW--KKWHLAT------SGN--QAHIITMPHHNKQQIDSLIDELIFDLK  371 (380)
T ss_pred             ----HHH--hCeeEcc------cCC--EEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence                112  3444443      112  6788885  677788888888877655

>PLN03032 serine decarboxylase; Provisional

Probab=99.68  E-value=7.7e-14  Score=140.80  Aligned_cols=272  Identities=11%  Similarity=-0.002  Sum_probs=175.8

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCE--EEcCChHHHHHHHHHHhcc-CCCCe
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDI--FLTDGASPAVHMMMQLLIR-SENDG  217 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i--~~t~G~~~al~~~~~~l~~-~~gd~  217 (533)
                      ...+++++...+.+..+.....+.......++.+.+.+++.+.+|  .+++++  ++|+|||+++..++...+. .++..
T Consensus        36 ~~~~~~~~~~~~~~~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg--~~~~~~~G~fTsGGTEaNl~al~~ar~~~~~~~  113 (374)
T PLN03032         36 DYGELSQLMKYSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWE--LEKDEYWGYITTCGTEGNLHGILVGREVFPDGI  113 (374)
T ss_pred             ChHHHHHHHHhcccCCCCCcccCCCCccHHHHHHHHHHHHHHHhC--CCCccCCEEEeCchHHHHHHHHHHHHHhCCCcE
Confidence            345677777766543332222222222346777777777777667  556676  9999999999998887641 14568


Q ss_pred             EEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHH
Q 009517          218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD  297 (533)
Q Consensus       218 Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~  297 (533)
                      |+++.-.|.....+++..|..+..+|++.  +..+|+++|+++|++.   ..++.+|+++..+|+||.+-+   +++|++
T Consensus       114 vi~s~~~H~Sv~kaa~~lg~~~~~V~~d~--~g~id~~~L~~~i~~~---~~~~~lvv~tagtt~tG~idp---i~eI~~  185 (374)
T PLN03032        114 LYASRESHYSVFKAARMYRMEAVKVPTLP--SGEIDYDDLERALAKN---RDKPAILNVNIGTTVKGAVDD---LDRILR  185 (374)
T ss_pred             EEeCCCceeHHHHHHHHcCCCCeEeeeCC--CCcCcHHHHHHHHHHc---CCCCEEEEEEecCcCCccCCC---HHHHHH
Confidence            99999999999999999999999999875  4489999999999862   114667778889999999977   889999


Q ss_pred             HHHHcC-----CEEEEccccccccc--cCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCH
Q 009517          298 FCKKEG-----LVLLADEVYQENVY--VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSA  370 (533)
Q Consensus       298 l~~~~~-----~~lI~De~y~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~  370 (533)
                      +|+++|     +++.+|.+|.++..  ....+...+          ..... -+..|.+|.+ | .-..+|.++.   .+
T Consensus       186 i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~----------~~~vD-Sis~s~HK~~-g-~P~g~G~ll~---r~  249 (374)
T PLN03032        186 ILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTF----------RKPIG-SVSVSGHKFL-G-CPMPCGVALT---RK  249 (374)
T ss_pred             HHHHhCCCCCCeeEEEEccchhhhhhccCCCcccCC----------CcCCc-EEEECccccc-C-CCcCeEEEEE---Ec
Confidence            999996     59999999977432  111111111          01112 3466889965 4 2356788887   55


Q ss_pred             HHHHHHHHhh------hccccCCh-----HHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 009517          371 EVREQIYKVA------SVNLCSNI-----SGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGI  439 (533)
Q Consensus       371 ~~~~~l~~~~------~~~~~~~~-----~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~  439 (533)
                      +.++.+..-.      ..+...+.     +...+....+            -.+...++.++..++.+++.+.|++. ++
T Consensus       250 ~~~~~~~~~~~Yl~~~d~ti~gSR~g~~~l~~w~~l~~~------------G~~g~~~~~~~~~~~a~~l~~~l~~~-~~  316 (374)
T PLN03032        250 KHVKALSQNVEYLNSRDATIMGSRNGHAPLYLWYTLRRK------------GYRGIKRDVQHCMRNAHYLKDRLTEA-GL  316 (374)
T ss_pred             hhhHhhccCCcccCCCCCcccCCCchHHHHHHHHHHHHh------------CHHHHHHHHHHHHHHHHHHHHHHHhC-CC
Confidence            5555443211      11222222     2222222222            12345667777788888999999887 66


Q ss_pred             eE-ecCCceeEEe
Q 009517          440 TC-NKAEGAMYLF  451 (533)
Q Consensus       440 ~~-~~~~gg~~~~  451 (533)
                      .. ..|.....+|
T Consensus       317 ~~~~~p~~~~V~f  329 (374)
T PLN03032        317 TCRLNELSSTVVF  329 (374)
T ss_pred             cEEECCCceEEEE
Confidence            64 4566554443

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=99.67  E-value=3.9e-14  Score=145.06  Aligned_cols=316  Identities=14%  Similarity=0.022  Sum_probs=192.7

Q ss_pred             cCCCCHH-HHHHHHHHHhcCCCCCccccCC--CcccHHHHHHHHHHHHhhcCCCCCCCCEEEcC-ChHHHHHHHHHHhcc
Q 009517          137 QGLFSAD-SIERAWQILDQIPGRATGAYSH--SQGIKGLRDTIAAGIEARDGFPADPNDIFLTD-GASPAVHMMMQLLIR  212 (533)
Q Consensus       137 ~~~~p~~-v~~~~~~~~~~~~~~~~~~Y~~--~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~-G~~~al~~~~~~l~~  212 (533)
                      |..+|+. |++++.+.+..     ..+..+  ..-+.+.|+.+++++    |.+ +.++|++++ +++.+++.++..++ 
T Consensus        20 p~~~~~~~v~~a~~~~~~~-----~~hr~~~f~~~~~~~r~~l~~l~----~~~-~~~~v~~~~gs~T~~~~~~~~~l~-   88 (378)
T PRK03080         20 PCKKRPGWQLEALADALLG-----RSHRQKPVKALLKRVIEGTRELL----SLP-EGYEVGIVPGSDTGAWEMALWSLL-   88 (378)
T ss_pred             CcCCChHHHHHHHHhhhcc-----cCcCCHHHHHHHHHHHHHHHHHh----CCC-CCceEEEECCchHHHHHHHHHhcC-
Confidence            3444677 88887655432     111121  112345555566555    421 345788876 89999999999987 


Q ss_pred             CC-CCeEEEcCCcCcc-hHH-HHHHhCC-eEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCC
Q 009517          213 SE-NDGILCPIPQYPL-YSA-SIALHGG-TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLA  288 (533)
Q Consensus       213 ~~-gd~Vlv~~p~~~~-~~~-~~~~~g~-~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s  288 (533)
                      .+ ++.|+. .-.|+. +.. +.+..|. ++..++.+.  +..+|+++++           .++.|.+++..|.||+..+
T Consensus        89 ~~~~~~vi~-~g~f~~~~~~~~~~~~g~~~v~~~~~~~--g~~~d~~~i~-----------~~~~V~~~h~~t~tG~~~p  154 (378)
T PRK03080         89 GARRVDHLA-WESFGSKWATDVVKQLKLEDPRVLEADY--GSLPDLSAVD-----------FDRDVVFTWNGTTTGVRVP  154 (378)
T ss_pred             CCCcceEEE-eCHHHHHHHHHHHhhcCCCCceEeccCC--CCCCCHhhcC-----------CCCCEEEEecCCccceecc
Confidence            54 444444 444444 222 2255788 888887653  3356776632           2456888999999999999


Q ss_pred             HHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecC
Q 009517          289 EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGF  368 (533)
Q Consensus       289 ~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~  368 (533)
                         +++|++  +++|+++|+|.+++-    |..+ .++..    +     |   +++.|..|+|.|++|  +|++.+   
T Consensus       155 ---i~~I~~--~~~g~~~vVDa~qs~----G~~p-idv~~----i-----D---~~~~s~~K~l~~P~G--~g~l~v---  207 (378)
T PRK03080        155 ---VARWIG--ADREGLTICDATSAA----FALP-LDWSK----L-----D---VYTFSWQKVLGGEGG--HGMAIL---  207 (378)
T ss_pred             ---chhhcc--ccCCCeEEEeccccc----ccCC-CCHHH----C-----c---EEEEehhhhCCCCCc--eEEEEE---
Confidence               777777  788999999999875    3222 22211    1     3   778888999855556  566666   


Q ss_pred             CHHHHHHHHHhh-----------------------hcc-ccCChHHHHHHHHHcCCCCCCChhHHHHHH--HHHHHHHHH
Q 009517          369 SAEVREQIYKVA-----------------------SVN-LCSNISGQILASLVMSPPKVGDESYESYCA--ERDGILSSL  422 (533)
Q Consensus       369 ~~~~~~~l~~~~-----------------------~~~-~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~--~~~~~~~~~  422 (533)
                      +++.++++....                       ..+ ..++..+..++..+|+          ...+  -++.+.++.
T Consensus       208 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~----------~l~~~gG~e~i~~r~  277 (378)
T PRK03080        208 SPRAVERLESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLD----------WANSIGGLDALIART  277 (378)
T ss_pred             CHHHHHhhhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHH----------HHHHcCCHHHHHHHH
Confidence            888877765321                       001 1233333333344442          1222  256777888


Q ss_pred             HHHHHHHHHHHhcCCCceEecC----Cc-eeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCC
Q 009517          423 ARRAKTLEDAFNSLEGITCNKA----EG-AMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVP  497 (533)
Q Consensus       423 ~~~~~~l~~~L~~~~g~~~~~~----~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~  497 (533)
                      +++.+++++.|++++++.+..+    .+ ++..+   ..|....        ..+..++..++ ++|+.+..|.. ..  
T Consensus       278 ~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~i~~~---~~~~~~~--------~~~~~~~~~l~-~~~i~v~~g~~-~~--  342 (378)
T PRK03080        278 AANASVLYDWAEKTPWATPLVADPATRSNTSVTL---DFVDAQA--------AVDAAAVAKLL-RENGAVDIEPY-RD--  342 (378)
T ss_pred             HHHHHHHHHHHHhCCCcccccCCccccCccEEEE---EcCCchH--------HHHHHHHHHHH-HcCCeeccccc-cC--
Confidence            8889999999998865655421    12 23332   2222000        00223344555 45888887643 21  


Q ss_pred             CCceEEEEec--CCcCcHHHHHHHHHHHHHHHHH
Q 009517          498 GTWHFRCTIL--PQEDKIPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       498 g~~~iRis~~--~~~e~i~~~~~~l~~~l~~~~~  529 (533)
                      ..+.||+|+.  +++++|+.+++.|++++++.+.
T Consensus       343 ~~~~vRis~~~~~t~~di~~l~~al~~~~~~~~~  376 (378)
T PRK03080        343 APNGLRIWCGPTVEPADVEALTPWLDWAFERLKA  376 (378)
T ss_pred             CCCcEEEecCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence            1248999996  8899999999999998887654

>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]

Probab=99.66  E-value=1.7e-13  Score=127.98  Aligned_cols=312  Identities=13%  Similarity=0.101  Sum_probs=202.2

Q ss_pred             ccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcC-CcCcc-hHHHHHHhCC
Q 009517          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI-PQYPL-YSASIALHGG  237 (533)
Q Consensus       160 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~-p~~~~-~~~~~~~~g~  237 (533)
                      ..+|..++ ...+.+.+-+-+...|.. .++.-.++...++.+++.++-.++ .|||.|++.. ..|.. +.++.+..|+
T Consensus        40 ~lgh~sPe-~~qIm~~v~egikyVFkT-~n~~tf~isgsGh~g~E~al~N~l-ePgd~vLv~~~G~wg~ra~D~~~r~ga  116 (385)
T KOG2862|consen   40 SLGHMSPE-FVQIMDEVLEGIKYVFKT-ANAQTFVISGSGHSGWEAALVNLL-EPGDNVLVVSTGTWGQRAADCARRYGA  116 (385)
T ss_pred             ccccCCHH-HHHHHHHHHHHHHHHhcc-CCCceEEEecCCcchHHHHHHhhc-CCCCeEEEEEechHHHHHHHHHHhhCc
Confidence            34555443 444444444433333321 122334555556789999999998 7999988766 44543 5678899999


Q ss_pred             eEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccc
Q 009517          238 TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY  317 (533)
Q Consensus       238 ~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~  317 (533)
                      ++..++.+...  .+.++.+.+++..+     ++++|++++-..-||+.-+  -+..+-++|++|+.++++|.+-+-   
T Consensus       117 ~V~~v~~~~G~--~~~le~i~~~lsqh-----~p~~vfv~hgdsSTgV~q~--~~~~~g~lc~k~~~lllVD~VaSl---  184 (385)
T KOG2862|consen  117 EVDVVEADIGQ--AVPLEEITEKLSQH-----KPKAVFVTHGDSSTGVLQD--LLAISGELCHKHEALLLVDTVASL---  184 (385)
T ss_pred             eeeEEecCccc--CccHHHHHHHHHhc-----CCceEEEEecCccccccch--HHHHHHHHhhcCCeEEEEechhhc---
Confidence            99999877644  78999999999997     8999999999999999865  355667799999999999998874   


Q ss_pred             cCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh----------------
Q 009517          318 VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS----------------  381 (533)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~----------------  381 (533)
                       |..++.     +.+     ..+. +....-.|++++++|+-+  +..   ++...++++..++                
T Consensus       185 -ggt~F~-----mDe-----wgVD-vaytgSQKaL~aP~GLsi--isf---S~ka~~~~~~rK~~~~~~yFd~~~~~~~w  247 (385)
T KOG2862|consen  185 -GGTEFE-----MDE-----WGVD-VAYTGSQKALGAPAGLSI--ISF---SDKALEAIRDRKTKPVSFYFDILRLGNFW  247 (385)
T ss_pred             -CCccce-----ehh-----hccc-EEEecchhhcCCCCCcce--eec---CHHHHHHHhhccCCceEEEEeHHhhcchh
Confidence             322211     111     2333 445555799988888766  443   7777777764321                


Q ss_pred             --------ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEec--CCceeEEe
Q 009517          382 --------VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNK--AEGAMYLF  451 (533)
Q Consensus       382 --------~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~--~~gg~~~~  451 (533)
                              ....++....+.+.++|..         -..+-+++..++.+++.++++..|+++ |++...  .+--.-..
T Consensus       248 gc~~e~~~yhhT~pv~lly~Lr~AL~~---------I~eeGL~~~~~rH~e~s~~l~~~l~~~-GLq~fv~~e~~rlptv  317 (385)
T KOG2862|consen  248 GCDGEPRAYHHTPPVQLLYSLRAALAL---------IAEEGLENSWRRHREMSKWLKLSLEAL-GLQLFVVDEELRLPTV  317 (385)
T ss_pred             ccCCcccccccCCcHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHh-CccceecChhhccCcc
Confidence                    0123344444555555431         123447778888899999999999998 765321  11111111


Q ss_pred             cccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec---CCcCcHHHHHHHHHHHHHH
Q 009517          452 PRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL---PQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~---~~~e~i~~~~~~l~~~l~~  526 (533)
                      ..+..|.+         . +..+.+.++...++|.+.-|-.   +....+|||.+.   .+.+.|+..++.|+.++.+
T Consensus       318 ttv~vp~g---------v-Dw~dVv~~~~~~~~vei~gglg---~~~gKv~RIGl~gcna~~e~i~~v~~ll~~alq~  382 (385)
T KOG2862|consen  318 TTVKVPYG---------V-DWKDVVAYAMSHYVVEIGGGLG---PTVGKVFRIGLLGCNANVEYIDNVVELLKLALQR  382 (385)
T ss_pred             eeeecCCC---------C-CHHHHHHHHHHhcCEEeccccC---CCcccEEEEEEeeccCCcHHHHHHHHHHHHHHhh
Confidence            12333432         1 3445566777766777765443   334449999982   5677888888888877754

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.66  E-value=4.5e-14  Score=156.46  Aligned_cols=319  Identities=14%  Similarity=0.097  Sum_probs=208.7

Q ss_pred             ccccCC---CcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH----HHHHHHHHHhccCCCC----eEEEcCCcCcch
Q 009517          160 TGAYSH---SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS----PAVHMMMQLLIRSEND----GILCPIPQYPLY  228 (533)
Q Consensus       160 ~~~Y~~---~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~----~al~~~~~~l~~~~gd----~Vlv~~p~~~~~  228 (533)
                      .+-|.|   .+|+.++...+.+++.+..|    .+.|.++++++    +++.++++.+...+||    +|+++...|...
T Consensus       554 ~hp~~p~~~~~g~~~~~~~~r~~la~i~g----~~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn  629 (993)
T PLN02414        554 IHPFAPVDQAQGYQEMFEDLGDLLCEITG----FDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTN  629 (993)
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHHHhC----CCeEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccC
Confidence            455555   45766666666666665545    38999999988    8999999999733387    899999999988


Q ss_pred             HHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEE
Q 009517          229 SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLA  308 (533)
Q Consensus       229 ~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~  308 (533)
                      ...+...|.+++.++++++  ..+|+++|+++++++   ..++++|++++|+|-+|...+   +++|+++|+++|+++++
T Consensus       630 ~a~a~~~G~~vv~v~~d~~--G~vDle~L~~~i~~~---~~~ta~V~vt~pSn~gg~e~~---I~eI~~iah~~Galv~v  701 (993)
T PLN02414        630 PASAAMCGMKIVVVGTDAK--GNINIEELRKAAEAH---KDNLAALMVTYPSTHGVYEEG---IDEICDIIHDNGGQVYM  701 (993)
T ss_pred             HHHHHHCCCEEEEeccCCC--CCcCHHHHHHHHhcc---CCCeEEEEEECCCccccccch---HHHHHHHHHHcCCEEEE
Confidence            8888889999999999753  379999999999852   126899999999999999877   99999999999999999


Q ss_pred             ccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCC---CCeeEEEEEecCCHHHHHHHHHh------
Q 009517          309 DEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGEC---GKRGGYMEVTGFSAEVREQIYKV------  379 (533)
Q Consensus       309 De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~---G~riG~v~~~~~~~~~~~~l~~~------  379 (533)
                      |.++..-.. +-   ...    .++   .-|   +++.|..|+|.++.   |-.+|++.+   .++++..+-.-      
T Consensus       702 DgAq~~a~~-~l---~~p----~~~---GaD---~~~~s~HK~f~~P~G~GGPg~G~l~~---~~~L~p~lPg~~v~~~~  764 (993)
T PLN02414        702 DGANMNAQV-GL---TSP----GFI---GAD---VCHLNLHKTFCIPHGGGGPGMGPIGV---KKHLAPFLPSHPVVPTG  764 (993)
T ss_pred             EecCHHhcc-Cc---CCc----ccc---CCC---EEEecCCccCCcCcccCCCCeeeEEE---chhhcccCCCCccccCC
Confidence            999843111 10   110    111   234   77888999885333   244788876   66555443210      


Q ss_pred             ------hhccccC---ChHHHH----HHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCc
Q 009517          380 ------ASVNLCS---NISGQI----LASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEG  446 (533)
Q Consensus       380 ------~~~~~~~---~~~~q~----a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~g  446 (533)
                            .....+.   .+.++.    ++...+..-         -.+.+++..+....+.+++.+.|.+..++.+..+.+
T Consensus       765 ~~~~r~~~s~iGt~~~a~~g~al~l~~A~~yi~~l---------G~~Gl~~~a~~a~~nAnYl~~rL~~~~~~~~~~~~~  835 (993)
T PLN02414        765 GIPRPEKTQPLGTISAAPWGSALILPISYTYIAMM---------GSEGLTDASKIAILNANYMAKRLEGHYPVLFRGKNG  835 (993)
T ss_pred             CcccccCCCCcCCccchhhhhHHHHHHHHHHHHHH---------CHhHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCC
Confidence                  0000111   122221    222222110         113355667777888899999997754555555444


Q ss_pred             eeEE-e-cccC-CCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHH
Q 009517          447 AMYL-F-PRIQ-LPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLT  521 (533)
Q Consensus       447 g~~~-~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~  521 (533)
                      .++- | +++. ++.       ..|. +...+.++|+ ++||...- ..|.   ..+.+||++.  .+.++|++++++|.
T Consensus       836 ~~~hEfv~~~~~l~~-------~~g~-~~~di~krL~-d~Gihapt-~~~p---v~~~lmiepTE~~skeelDrf~~al~  902 (993)
T PLN02414        836 TCAHEFIIDLRPFKN-------TAGI-EPEDVAKRLM-DYGFHAPT-MSWP---VPGTLMIEPTESESKAELDRFCDALI  902 (993)
T ss_pred             CeeeeEEEecccccc-------ccCC-CHHHHHHHHH-HcCcEEee-eccc---cCCEEEEEeeeeCCHHHHHHHHHHHH
Confidence            3211 1 1222 111       0111 2244555555 88997543 3342   2448999996  78889999999999


Q ss_pred             HHHHHHHH
Q 009517          522 DFHKNFMD  529 (533)
Q Consensus       522 ~~l~~~~~  529 (533)
                      .+.++..+
T Consensus       903 ~i~~e~~~  910 (993)
T PLN02414        903 SIREEIAD  910 (993)
T ss_pred             HHHHHHHH
Confidence            88887664

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=99.64  E-value=5.3e-13  Score=139.47  Aligned_cols=331  Identities=14%  Similarity=0.066  Sum_probs=191.6

Q ss_pred             CHHHHHHHHHHHhcCCCCC---ccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEE---cCChHHHHHHHHHHhccCC
Q 009517          141 SADSIERAWQILDQIPGRA---TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFL---TDGASPAVHMMMQLLIRSE  214 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~---~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~---t~G~~~al~~~~~~l~~~~  214 (533)
                      .+.+.+++...+.+..+.+   ...|+-..-..++.+...+...+.++  ...+.+++   .++|+.|+..++.+++ ++
T Consensus        47 s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~--~~~~~~~~nv~~~SG~~AN~av~~aL~-~p  123 (475)
T PLN03226         47 SRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRALEAFR--LDPEKWGVNVQPLSGSPANFAVYTALL-QP  123 (475)
T ss_pred             CHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHHHHHhC--CCcceeEEecCcCchHHHHHHHHHHhC-CC
Confidence            5788888888774332211   11133333234444433334444455  33334433   3667789999999998 89


Q ss_pred             CCeEEEcCC---cCcchHHHHHH---hCCe----EEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCc
Q 009517          215 NDGILCPIP---QYPLYSASIAL---HGGT----LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTG  284 (533)
Q Consensus       215 gd~Vlv~~p---~~~~~~~~~~~---~g~~----~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG  284 (533)
                      ||+|+..+.   +|.++......   .+..    ++++..+.+ +..+|+++|++.+...     +++.|++. .++ +|
T Consensus       124 gD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~~-~g~iD~d~Le~~l~~~-----~pklIv~~-~S~-~s  195 (475)
T PLN03226        124 HDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDES-TGLIDYDKLEKKAMLF-----RPKLIIAG-ASA-YP  195 (475)
T ss_pred             CCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecCC-CCCcCHHHHHHHHhhc-----CCeEEEEe-cCc-CC
Confidence            999998553   33333222111   1121    113444443 4579999999999764     67766543 333 56


Q ss_pred             cCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEE
Q 009517          285 QVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYME  364 (533)
Q Consensus       285 ~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~  364 (533)
                      ...+   +++|.++|+++|+++++|+++.-.....+. ..+.  + .     +.|   +++.|++|+|.   |-+.|++.
T Consensus       196 ~~~D---~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~-~~~p--~-~-----~~D---iv~~t~hK~L~---GP~Gg~I~  257 (475)
T PLN03226        196 RDWD---YARMRKIADKVGALLMCDMAHISGLVAAQE-AASP--F-E-----YCD---VVTTTTHKSLR---GPRGGMIF  257 (475)
T ss_pred             CccC---HHHHHHHHHHcCCEEEEEchhhhCcccCCC-CCCC--C-C-----CCe---EEEecCccccc---CCCceEEE
Confidence            6666   788999999999999999998654432221 1110  0 0     123   77899999884   55558887


Q ss_pred             EecCCHHHH-----------HH---HHHhhh--ccccCChHHHHHHHHHcCCCCCCChhHHHHH-HHHHHHHHHHHHHHH
Q 009517          365 VTGFSAEVR-----------EQ---IYKVAS--VNLCSNISGQILASLVMSPPKVGDESYESYC-AERDGILSSLARRAK  427 (533)
Q Consensus       365 ~~~~~~~~~-----------~~---l~~~~~--~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  427 (533)
                      +   +++++           +.   +.....  ...++++...+++..+|..          .. ...+..+++..++.+
T Consensus       258 ~---~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~----------i~~~~~~~~~~~~~~na~  324 (475)
T PLN03226        258 F---RKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQ----------AMTPEFKAYQKQVKANAA  324 (475)
T ss_pred             E---chhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHH----------HhCcCHHHHHHHHHHHHH
Confidence            6   55433           21   211111  2233444444444444421          11 123456777888899


Q ss_pred             HHHHHHhcCCCceEecCC-ceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCC--CCCCceEEE
Q 009517          428 TLEDAFNSLEGITCNKAE-GAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ--VPGTWHFRC  504 (533)
Q Consensus       428 ~l~~~L~~~~g~~~~~~~-gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~--~~g~~~iRi  504 (533)
                      +|++.|.+. |+.++.+. ....+++++. +.         +++ .. .+...|++.||.+..+.-.+.  .-....||+
T Consensus       325 ~L~~~L~~~-G~~l~~~~t~~hi~lv~~~-~~---------gi~-~~-~~~~~L~~~~I~~nk~~~p~~~~~~~~~giRi  391 (475)
T PLN03226        325 ALANRLMSK-GYKLVTGGTDNHLVLWDLR-PL---------GLT-GS-RVEKVLDLAHITLNKNAVPGDSSALVPGGVRI  391 (475)
T ss_pred             HHHHHHHhC-CCEEEcCCCCCCEEEEEcc-CC---------CCC-HH-HHHHHHHHCCCEECCCCCCCCcccCCCCCccc
Confidence            999999886 99887632 1334444442 11         111 22 245778889999986542221  011225888


Q ss_pred             Ee------cCCcCcHHHHHHHHHHHHHH
Q 009517          505 TI------LPQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       505 s~------~~~~e~i~~~~~~l~~~l~~  526 (533)
                      +.      +.++++++++++.|.++++.
T Consensus       392 Gt~~lt~~g~~~~d~~~ia~~i~~~~~~  419 (475)
T PLN03226        392 GTPAMTSRGLVEKDFEKVAEFLHRAVTI  419 (475)
T ss_pred             CcHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence            44      37788999999999999884

>PRK04311 selenocysteine synthase; Provisional

Probab=99.64  E-value=7.6e-13  Score=137.23  Aligned_cols=330  Identities=14%  Similarity=0.127  Sum_probs=191.3

Q ss_pred             CCHHHHHHHHHHHhcCCCCCccccCCC---cc--cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCC
Q 009517          140 FSADSIERAWQILDQIPGRATGAYSHS---QG--IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSE  214 (533)
Q Consensus       140 ~p~~v~~~~~~~~~~~~~~~~~~Y~~~---~G--~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~  214 (533)
                      +|+++++++.+.+....   ..+|...   .|  +..+++.++++++        .+..+++++++.|+..++..+  .+
T Consensus        98 l~~~v~eav~~~~~~~~---~le~~l~~g~~g~r~~~~e~~lA~l~G--------ae~a~vv~sgtaAl~l~l~~l--~~  164 (464)
T PRK04311         98 LSEAAIEAVTEAARGYS---NLEYDLATGKRGSRDRALAALLCALTG--------AEDALVVNNNAAAVLLALNAL--AA  164 (464)
T ss_pred             CCHHHHHHHHHHHhccc---ccccchhhcccchHHHHHHHHHHHHhC--------CCeEEEECCHHHHHHHHHHHh--CC
Confidence            38999999988876532   1223221   11  3567777777764        456788888999999988765  58


Q ss_pred             CCeEEEcCCcCcc------hHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCC--Cc--
Q 009517          215 NDGILCPIPQYPL------YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP--TG--  284 (533)
Q Consensus       215 gd~Vlv~~p~~~~------~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NP--tG--  284 (533)
                      ||+|+++...+..      ....+...|++++.++...    ..++++++++|++      ++++|++.+++||  +|  
T Consensus       165 GdeVIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~~----~t~~~dle~aI~~------~TklV~~vh~sN~~i~G~~  234 (464)
T PRK04311        165 GKEVIVSRGELVEIGGAFRIPDVMRQAGARLVEVGTTN----RTHLRDYEQAINE------NTALLLKVHTSNYRIEGFT  234 (464)
T ss_pred             CCEEEEcchhhhhcCcchhhHHHHHHCCcEEEEECCCC----CCCHHHHHHhcCc------cCeEEEEEcCCCccccccC
Confidence            9999998864431      2345677899999887642    3579999999987      7999999999998  34  


Q ss_pred             cCCCHHHHHHHHHHHHHcCCEEEEcccccccc----ccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCee
Q 009517          285 QVLAEENQRAIVDFCKKEGLVLLADEVYQENV----YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRG  360 (533)
Q Consensus       285 ~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~ri  360 (533)
                      ...+   +++|+++|++||+++|+|.....+.    |.-. ..+.+.... ++   ..|   +++.|.+|.++   |-..
T Consensus       235 ~~~d---l~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~-~~p~~~~~l-~~---GaD---iv~fSg~K~Lg---Gp~~  300 (464)
T PRK04311        235 KEVS---LAELAALGKEHGLPVVYDLGSGSLVDLSQYGLP-DEPTVQELL-AA---GVD---LVTFSGDKLLG---GPQA  300 (464)
T ss_pred             CcCC---HHHHHHHHHHcCCeEEEECCCcccccchhccCC-CCCchhhHH-hc---CCc---EEEecCccccc---CCce
Confidence            4555   9999999999999999999643221    1100 011111211 11   234   78899999884   4468


Q ss_pred             EEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcC---CCCCCChhHH--HHHHHHHHHHHHHHHHHHHHHHHHh
Q 009517          361 GYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMS---PPKVGDESYE--SYCAERDGILSSLARRAKTLEDAFN  434 (533)
Q Consensus       361 G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~L~  434 (533)
                      |++++   .+++++++++..- ......-....+..+.|.   ++.   ..+.  ..++.+....++..++.+.+.+.|+
T Consensus       301 G~i~g---~~~li~~l~~~~~~r~lr~dk~~l~~l~~~l~~~~~~~---~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~  374 (464)
T PRK04311        301 GIIVG---KKELIARLKKHPLKRALRVDKLTLAALEATLRLYLDPE---KLAEEIPTLRLLTRSPEELRARAERLAAALK  374 (464)
T ss_pred             EEEEE---cHHHHHHHhhchhHHHHhcchHHHHHHHHHHHHHhChh---hhhhhCcHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            99988   8888887763211 111112222222222221   000   0000  0112223333556677888888887


Q ss_pred             cCC--Cc--eEecC----CceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccc--eEEEcCCCCCCCCCCceEEE
Q 009517          435 SLE--GI--TCNKA----EGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATG--IVLVPGSGFGQVPGTWHFRC  504 (533)
Q Consensus       435 ~~~--g~--~~~~~----~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g--V~v~pg~~f~~~~g~~~iRi  504 (533)
                      ..+  ++  .++..    .||-  .+...+|.-... ....+. .... +.+.|++..  |..+-      ..+  .|.+
T Consensus       375 ~~~~~~~~~~~~~~~~~~gggs--~p~~~~~~~~v~-~~~~~~-~~~~-l~~~lr~~~~~i~~r~------~~~--~~~l  441 (464)
T PRK04311        375 AALGAAFAVEVVPSFSQVGGGS--LPVDRLPSAAVT-LTPKDR-SLEA-LAARLRLLPPPVIGRI------EDG--RLLL  441 (464)
T ss_pred             hccCCCeeEEEEEccCccCCCC--CcCCCCCeEEEE-EeCCCC-CHHH-HHHHHhcCCCCEEEEE------ECC--EEEE
Confidence            753  32  33322    0110  111111110000 000011 1222 335566533  54442      333  6777


Q ss_pred             Eec-CCcCcHHHHHHHHHHHHH
Q 009517          505 TIL-PQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       505 s~~-~~~e~i~~~~~~l~~~l~  525 (533)
                      -+. +.+++++.++++|.+++.
T Consensus       442 d~r~~~~~~~~~~~~~~~~~~~  463 (464)
T PRK04311        442 DLRTLEEEDEERLAAALLEALN  463 (464)
T ss_pred             EeCcCCHHHHHHHHHHHHHHhh
Confidence            775 888888999999888753

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=99.62  E-value=4.3e-13  Score=128.57  Aligned_cols=231  Identities=13%  Similarity=0.118  Sum_probs=153.3

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcc----hHHHHHHhCCeEEEEec
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPL----YSASIALHGGTLVPYYL  244 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~----~~~~~~~~g~~~~~v~~  244 (533)
                      ...|.+.||.+-+..        --+.+.+++.|+..++..++ .+||.|+-.+--|.+    +...++..|.++.++.-
T Consensus        64 ~~vlE~RiAaLEGG~--------aa~a~aSG~AA~~~ai~~la-~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v~fvd~  134 (426)
T COG2873          64 TDVLEERIAALEGGV--------AALAVASGQAAITYAILNLA-GAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRFVDP  134 (426)
T ss_pred             HHHHHHHHHHhhcch--------hhhhhccchHHHHHHHHHhc-cCCCeeEeeccccCchHHHHHHHHHhcCcEEEEeCC
Confidence            466777777775421        23567888999999999998 899999998877776    34556778999998863


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcc
Q 009517          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (533)
Q Consensus       245 ~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~  324 (533)
                             .|++.++++|++      +||+|+++...||.+.+++   +++|+++|+++++++|+|..+..-++     ..
T Consensus       135 -------~d~~~~~~aI~~------nTkavf~EtigNP~~~v~D---ie~ia~iAh~~gvpliVDNT~atpyl-----~r  193 (426)
T COG2873         135 -------DDPENFEAAIDE------NTKAVFAETIGNPGLDVLD---IEAIAEIAHRHGVPLIVDNTFATPYL-----CR  193 (426)
T ss_pred             -------CCHHHHHHHhCc------ccceEEEEeccCCCccccC---HHHHHHHHHHcCCcEEEecCCCccee-----cc
Confidence                   379999999998      8999999999999999998   99999999999999999998865211     01


Q ss_pred             cHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHH--HHHHh-------h----hccccCChHHH
Q 009517          325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVRE--QIYKV-------A----SVNLCSNISGQ  391 (533)
Q Consensus       325 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~--~l~~~-------~----~~~~~~~~~~q  391 (533)
                      +   +  +.   ..|   |++.|++|.++| .|--+|-+++.+..-++..  .+..+       .    ..+++...+..
T Consensus       194 P---~--~h---GAD---IVvHS~TK~igG-hGt~iGG~iVD~G~FDw~~~~rfP~~~~p~p~YhGl~~~~~~g~~af~~  261 (426)
T COG2873         194 P---I--EH---GAD---IVVHSATKYIGG-HGTAIGGVIVDGGKFDWTANGRFPEFTTPDPSYHGLVYTETFGNAAFII  261 (426)
T ss_pred             h---h--hc---CCC---EEEEeecccccC-CccccceEEEeCCccccccCCCCcccCCCCccccceehhhhcccHHHHH
Confidence            1   1  11   244   889999999954 7888888877432222210  00000       0    01122222332


Q ss_pred             HHHHHHcCCCCCCChhHHH-----HHHHHHHHHHHHHHHHHHHHHHHhcCCCceE
Q 009517          392 ILASLVMSPPKVGDESYES-----YCAERDGILSSLARRAKTLEDAFNSLEGITC  441 (533)
Q Consensus       392 ~a~~~~L~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~  441 (533)
                      .+-...|++......-+..     -++.+.-+.++..++...+.+.|+..|.+.+
T Consensus       262 ~~r~~~lRDlGa~lsPfnAfl~lqGlETL~LRmerH~~NA~~vA~~L~~HpkV~~  316 (426)
T COG2873         262 KARVQLLRDLGATLSPFNAFLLLQGLETLSLRMERHCENALKVAEFLENHPKVAW  316 (426)
T ss_pred             HHHHHHHHhcccccCcHHHHHHHhchhhhHHHHHHHHHhHHHHHHHHhcCCCeee
Confidence            3333333332111111111     1234455566677788889999998765544

>PLN02271 serine hydroxymethyltransferase

Probab=99.60  E-value=3.5e-12  Score=131.47  Aligned_cols=332  Identities=12%  Similarity=0.041  Sum_probs=200.6

Q ss_pred             CHHHHHHHHHHHhcCCCCC---ccccCCCcccHHHHHHHHHHHHhhcCCCCCC--CCEEEcCChHHHHHHHHHHhccCCC
Q 009517          141 SADSIERAWQILDQIPGRA---TGAYSHSQGIKGLRDTIAAGIEARDGFPADP--NDIFLTDGASPAVHMMMQLLIRSEN  215 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~---~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~--~~i~~t~G~~~al~~~~~~l~~~~g  215 (533)
                      .+.+.+++-..+.+.+...   ...|+-...+.++.....+...+.||.+...  -||..- +++.|+..++.+++ +||
T Consensus       161 S~av~~algS~ltnkYaEG~pG~Ryy~G~~~iD~iE~la~era~~lF~~~~~~~gaNVQp~-SGs~AN~aV~~ALl-~PG  238 (586)
T PLN02271        161 CRAVMEALGSHLTNKYSEGMPGARYYTGNQYIDQIERLCCERALAAFGLDSEKWGVNVQPY-SCTSANFAVYTGLL-LPG  238 (586)
T ss_pred             CHHHHHHhcCcccccCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHhCCcccccccceeec-cHHHHHHHHHHHhc-CCC
Confidence            4666666655554432211   1223344445566666667777777744311  456665 56678888888888 899


Q ss_pred             CeEEEcCCcCcchHHHH---------HHhCCeEEEEe--cCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCc
Q 009517          216 DGILCPIPQYPLYSASI---------ALHGGTLVPYY--LDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTG  284 (533)
Q Consensus       216 d~Vlv~~p~~~~~~~~~---------~~~g~~~~~v~--~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG  284 (533)
                      |+|+..+..+.++....         ...|..+..++  ++++ +..+|.++|++.....     ++|+|++..-.||  
T Consensus       239 D~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~-~g~IDyd~lek~a~~~-----rPKLII~g~Sayp--  310 (586)
T PLN02271        239 DRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQ-TGYIDYDKLEEKALDF-----RPKILICGGSSYP--  310 (586)
T ss_pred             CEEEEecCCCCCchhcccccccccccccccceEEEEEcccccc-cCccCHHHHHHHhhhc-----CCeEEEECchhcc--
Confidence            99999988888765432         33455444444  5433 5579999999955543     8999988777777  


Q ss_pred             cCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEE
Q 009517          285 QVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYME  364 (533)
Q Consensus       285 ~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~  364 (533)
                      ..++   +++|+++|+++|+++++|.++......++. +.+...        +.|   ++..|.+|+|.   |-|.|.+.
T Consensus       311 r~~D---~~~i~eIAdevGA~LmvD~AH~aGLIa~g~-~~sP~~--------~aD---vvt~TTHKtLr---GPrGG~I~  372 (586)
T PLN02271        311 REWD---YARFRQIADKCGAVLMCDMAHISGLVAAKE-CVNPFD--------YCD---IVTSTTHKSLR---GPRGGIIF  372 (586)
T ss_pred             CcCC---HHHHHHHHHHcCCEEEEECcccccccccCc-CCCCCc--------CCc---EEEeCCcccCC---CCCceEEE
Confidence            4455   888999999999999999999653333321 111000        234   77899999884   66668877


Q ss_pred             EecCCH--------------------HHHHHHHHhhhccccCChHH--HHHHHHHcCCCCCCChhHHHHHHHHHHHHHHH
Q 009517          365 VTGFSA--------------------EVREQIYKVASVNLCSNISG--QILASLVMSPPKVGDESYESYCAERDGILSSL  422 (533)
Q Consensus       365 ~~~~~~--------------------~~~~~l~~~~~~~~~~~~~~--q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~  422 (533)
                      .   ++                    ++.+.+....-....++++.  .++.+.++...         ...+.+.-.++.
T Consensus       373 ~---r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAalAvalkea---------~~~efk~Ya~QV  440 (586)
T PLN02271        373 Y---RKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQV---------ATPEYKAYMQQV  440 (586)
T ss_pred             e---cccccccccCCccccccccccHHHHHHhhcccCCccccChhHHHHHHHHHHHHHH---------hChHHHHHHHHH
Confidence            6   32                    34444433221122222222  22223333210         011224445567


Q ss_pred             HHHHHHHHHHHhcCCCceEecC-CceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCC--CCCC
Q 009517          423 ARRAKTLEDAFNSLEGITCNKA-EGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ--VPGT  499 (533)
Q Consensus       423 ~~~~~~l~~~L~~~~g~~~~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~--~~g~  499 (533)
                      .++.+.|.+.|.+. |++++.. ..+..+++++..-          ++  +-..+.+.|++.||.+.--.-++.  .-..
T Consensus       441 v~NAkaLA~~L~~~-G~~vv~ggTdnHlvLvDl~~~----------g~--~G~~ae~~Le~~~I~~Nkn~iP~d~~~~~p  507 (586)
T PLN02271        441 KKNAQALASALLRR-KCRLVTGGTDNHLLLWDLTTL----------GL--TGKNYEKVCEMCHITLNKTAIFGDNGTISP  507 (586)
T ss_pred             HHHHHHHHHHHHHC-CCeEeeCCCCcceeeecCccc----------CC--CHHHHHHHHHHcCeEeccccCCCCCCCCCC
Confidence            77888899999887 9887653 3345566565410          11  123356889999998743222221  1112


Q ss_pred             ceEEEEe------cCCcCcHHHHHHHHHHHHH
Q 009517          500 WHFRCTI------LPQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       500 ~~iRis~------~~~~e~i~~~~~~l~~~l~  525 (533)
                      ..|||..      +..+++++++.+-|.++++
T Consensus       508 sGiRiGT~alT~rG~~e~d~~~iA~~i~~~~~  539 (586)
T PLN02271        508 GGVRIGTPAMTSRGCLESDFETIADFLLRAAQ  539 (586)
T ss_pred             CcccccCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence            2689987      2567889999988888877

>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]

Probab=99.60  E-value=4.6e-13  Score=128.76  Aligned_cols=329  Identities=14%  Similarity=0.088  Sum_probs=210.5

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcc----cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc-CCC
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQG----IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-SEN  215 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G----~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~g  215 (533)
                      +++|.+++.+.+++... +..+--.+.|    ..+|.+.+|++..+        +--++.++.--|....+..|.+ -||
T Consensus       187 Hp~V~~A~~~tl~~hG~-GAGGTRNIsG~s~~hv~LE~eLA~LHqK--------~aALlFsSCfVANDstLftLak~lpg  257 (570)
T KOG1360|consen  187 HPEVLDAMHDTLDRHGA-GAGGTRNISGHSKHHVRLEAELADLHQK--------EAALLFSSCFVANDSTLFTLAKKLPG  257 (570)
T ss_pred             ChHHHHHHHHHHHHcCC-CcCCccccCCCCchhhhHHHHHHHHhcC--------cceeeeeeeeeccchHHHHHHHHCCC
Confidence            78999999999987543 2222223333    45788888888653        2233333333333333332210 278


Q ss_pred             CeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHH
Q 009517          216 DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAI  295 (533)
Q Consensus       216 d~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i  295 (533)
                      -+|+-....+....+.++..+..-+-+.-       -|++.|++.++....  .-+|.|-+++.+..+|.+.|   +++|
T Consensus       258 cei~SD~gNHASMI~GIrns~v~K~IFrH-------ND~~hL~~lL~~~~~--svPKivAFEtVhSM~Gavcp---leel  325 (570)
T KOG1360|consen  258 CEIFSDEGNHASMIQGIRNSRVPKHIFRH-------NDLDHLEQLLQSSPK--SVPKIVAFETVHSMDGAVCP---LEEL  325 (570)
T ss_pred             cEEeccccchHHHHHHhhhcCCcceeecc-------CCHHHHHHHHHhCCC--CCCceEEEeeeeccCCCcCC---HHHH
Confidence            88887777777777777777765544442       289999999987422  25678888899999999999   9999


Q ss_pred             HHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHH
Q 009517          296 VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQ  375 (533)
Q Consensus       296 ~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~  375 (533)
                      ++++++||.+-++||++.-..|++....  +    .+-+++-..+ .|+-+++.|+| |.-   .||+.+   ...+++.
T Consensus       326 cDvah~yGAiTFlDEVHAVGlYG~rGaG--v----gerdGvm~kv-DiIsGTLgKaf-GcV---GGYIAa---t~~LvDm  391 (570)
T KOG1360|consen  326 CDVAHKYGAITFLDEVHAVGLYGPRGAG--V----GERDGVMHKV-DIISGTLGKAF-GCV---GGYIAA---TRKLVDM  391 (570)
T ss_pred             HHHHHHhCceeeeehhhhhccccCCCCC--c----cccCCcchhh-hhcccchhhhc-ccc---cceehh---hhhHHHH
Confidence            9999999999999999987777532110  0    0000001111 26789999998 433   489987   8899999


Q ss_pred             HHHhhh---ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEec
Q 009517          376 IYKVAS---VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFP  452 (533)
Q Consensus       376 l~~~~~---~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~  452 (533)
                      ++.+..   .+.+-+|.....+..+.+-        .+. ++-+.+++.-+++..++++.|.++ |+.+++...-+ +=+
T Consensus       392 iRSyAaGFIFTTSLPP~vl~GAleaVr~--------lk~-~eg~~lR~~hqrnv~~~kq~l~~~-GiPVi~~pSHI-iPv  460 (570)
T KOG1360|consen  392 IRSYAAGFIFTTSLPPMVLAGALEAVRI--------LKS-EEGRVLRRQHQRNVKYVKQLLMEL-GIPVIPNPSHI-IPV  460 (570)
T ss_pred             HHHhcCceEEecCCChHHHHhHHHHHHH--------Hhh-hhhHHHHHHHHHHHHHHHHHHHHc-CCcccCCCcce-eee
Confidence            988764   2223333333333333210        001 122445556667778899999998 88776644322 111


Q ss_pred             ccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 009517          453 RIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~~  527 (533)
                      .+..+.            ...+.+..|+.++||+|..-.......|...+||++.  .+.+-++.+++.+..+++++
T Consensus       461 ~vgda~------------l~~~~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaPTP~HT~~mm~~lv~~l~~vw~~v  525 (570)
T KOG1360|consen  461 RVGDAA------------LAKQASDILISKHNIYVQAINYPTVARGTERLRIAPTPHHTPQMMNILVNALLDVWNEV  525 (570)
T ss_pred             eccCHH------------HHHHHHHHHHHhcCeEEEeccCCcccccceeeecCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence            122111            1334567889999999987555455567778999995  77777888888888887764

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=99.59  E-value=6.7e-12  Score=132.17  Aligned_cols=260  Identities=11%  Similarity=0.082  Sum_probs=167.5

Q ss_pred             cccCCCcccHHHHHHHHHHHHhhcCC-C--------CCC--CCEEEcCChHHHHHHHHHHhccC----------------
Q 009517          161 GAYSHSQGIKGLRDTIAAGIEARDGF-P--------ADP--NDIFLTDGASPAVHMMMQLLIRS----------------  213 (533)
Q Consensus       161 ~~Y~~~~G~~~lr~aia~~~~~~~g~-~--------~~~--~~i~~t~G~~~al~~~~~~l~~~----------------  213 (533)
                      ..|.......++.+.+.+|+.+..+. +        -.+  ..-++|+||++|+..++.+.+..                
T Consensus       119 ~~~~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl  198 (522)
T TIGR03799       119 VKIETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGL  198 (522)
T ss_pred             ceeecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccc
Confidence            33444445789999999999876531 1        011  23477999999999888776411                


Q ss_pred             ---------CCCeEEEcCCcCcchHHHHHHhCC---eEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCC
Q 009517          214 ---------ENDGILCPIPQYPLYSASIALHGG---TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGN  281 (533)
Q Consensus       214 ---------~gd~Vlv~~p~~~~~~~~~~~~g~---~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~N  281 (533)
                               ++..|++++-.|.....++...|.   +++.+|+++  ++.+|+++|+++|++....+.++-+|+-+..++
T Consensus       199 ~~~~~~~~~~~~~v~~S~~~H~S~~kaa~~lglg~~~v~~vp~d~--~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt  276 (522)
T TIGR03799       199 FAALKHYGYDGLAILVSERGHYSLGKAADVLGIGRDNLIAIKTDA--NNRIDVDALRDKCAELAEQNIKPLAIVGVAGTT  276 (522)
T ss_pred             hhhhhhccCCceEEEECCCchHHHHHHHHHcCCCcccEEEEEeCC--CCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCc
Confidence                     124688888889999989998888   788999975  458999999999986544443343344445577


Q ss_pred             CCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeE
Q 009517          282 PTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGG  361 (533)
Q Consensus       282 PtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG  361 (533)
                      .||.+-+   +++|+++|+++|+++++|.+|.+...-.    .....+...+.  ..|   .+..+.+|.+.+.  ..+|
T Consensus       277 ~tGaiDp---l~eIa~i~~~~g~~lHVDaA~gg~~~~~----~~~r~~l~gle--~aD---Sit~d~HK~l~~P--~g~G  342 (522)
T TIGR03799       277 ETGNIDP---LDEMADIAQELGCHFHVDAAWGGATLLS----NTYRHLLKGIE--RAD---SVTIDAHKQLYVP--MGAG  342 (522)
T ss_pred             CCCCcCC---HHHHHHHHHHcCCeEEEEchhhhHHHhC----HHHHHHhcCch--hCC---EEEEChhhcCCcC--cccE
Confidence            9999988   9999999999999999999998643211    11112222221  123   4577899976443  5578


Q ss_pred             EEEEecCCHHHHHHHHHhhh------------ccccCChHH----HHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 009517          362 YMEVTGFSAEVREQIYKVAS------------VNLCSNISG----QILASLVMSPPKVGDESYESYCAERDGILSSLARR  425 (533)
Q Consensus       362 ~v~~~~~~~~~~~~l~~~~~------------~~~~~~~~~----q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (533)
                      +++.  .++++.+.+.....            .+...+..+    ..++...+            -.+-++.+.++..+.
T Consensus       343 ~llv--r~~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~al~lw~aL~~l------------G~~G~~~ii~~~~~l  408 (522)
T TIGR03799       343 MVLF--KDPALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMAMLVYAGLHII------------GRKGYELLIDQSIEK  408 (522)
T ss_pred             EEEE--eCHHHHHHhccCcchhcCCCCCccccceeecCcchHHHHHHHHHHHH------------hHHHHHHHHHHHHHH
Confidence            7776  35555554433100            011111111    22222222            123457777888888


Q ss_pred             HHHHHHHHhcCCCceEecC-CceeEE
Q 009517          426 AKTLEDAFNSLEGITCNKA-EGAMYL  450 (533)
Q Consensus       426 ~~~l~~~L~~~~g~~~~~~-~gg~~~  450 (533)
                      ++++.+.|++.|+++++.+ +-+..+
T Consensus       409 a~~l~~~L~~~~~~el~~~p~l~iv~  434 (522)
T TIGR03799       409 AKYFADLIQQQPDFELVTEPELCLLT  434 (522)
T ss_pred             HHHHHHHHhhCCCeEEecCCCccEEE
Confidence            9999999999889988764 344333

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=99.58  E-value=2.2e-13  Score=138.40  Aligned_cols=313  Identities=14%  Similarity=0.094  Sum_probs=183.4

Q ss_pred             cCCCCHHHHHHHHHHHhcCCCCCccccCC--CcccHHHHHHHHHHHHhhcCCCCC-CCCEEEc-CChHHHHHHHHHHhcc
Q 009517          137 QGLFSADSIERAWQILDQIPGRATGAYSH--SQGIKGLRDTIAAGIEARDGFPAD-PNDIFLT-DGASPAVHMMMQLLIR  212 (533)
Q Consensus       137 ~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~--~~G~~~lr~aia~~~~~~~g~~~~-~~~i~~t-~G~~~al~~~~~~l~~  212 (533)
                      |..+|+++++++.........  ..++.+  ..-+.+.|+.++++++      ++ ..+|+++ .++|.+++.++..+. 
T Consensus        11 P~~~~~~v~~a~~~~~~~~~~--~~hr~~~f~~~~~~~r~~l~~l~~------~~~~~~v~f~~gs~T~a~~~~~~~l~-   81 (361)
T TIGR01366        11 PSKVRLEQLQALTTTAASLFG--TSHRQAPVKNLVGRVREGLAELFS------LPDGYEVILGNGGATAFWDAATFGLI-   81 (361)
T ss_pred             CcCCCHHHHHHHHhcCccccc--cCcCChHHHHHHHHHHHHHHHHhC------CCCCceEEEECCchhHHHHHHHHhcc-
Confidence            444578888886543211100  112222  1224556777777764      33 3478886 559999999999986 


Q ss_pred             CCCCeEEEcCCcCcc-hHHHHHHh--CCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCH
Q 009517          213 SENDGILCPIPQYPL-YSASIALH--GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAE  289 (533)
Q Consensus       213 ~~gd~Vlv~~p~~~~-~~~~~~~~--g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~  289 (533)
                      . ++.+++..-.|.. +...++.+  +.++..++.+..  ..++.     .+.      +++++|.+++..|.||++.+ 
T Consensus        82 ~-~~~l~i~~G~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~-----~~~------~~~~lV~~~h~et~tG~~~p-  146 (361)
T TIGR01366        82 E-KKSLHLSFGEFSSKFAKAVKLAPWLGEPIIVTADPG--SAPEP-----QAD------PGVDVIAWAHNETSTGVAVP-  146 (361)
T ss_pred             c-ccccEEecCHHHHHHHHHHHhhhccCCceEEecCCC--CCCCC-----ccC------CCCCEEEEcccCCccceecc-
Confidence            3 3344454555543 34444442  235666665432  13333     122      27999999999999999999 


Q ss_pred             HHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCC
Q 009517          290 ENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFS  369 (533)
Q Consensus       290 ~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~  369 (533)
                        +++|   ++++|+++|+|.+.+-    |..+ .++..         -|   +++.|-.|++ |.+|- ++.+++   +
T Consensus       147 --i~~I---~~~~g~~~iVDavqs~----g~~~-idv~~---------~D---~~~~s~~K~l-g~~~G-l~~~~~---s  199 (361)
T TIGR01366       147 --VRRP---EGSDDALVVIDATSGA----GGLP-VDIAE---------TD---VYYFAPQKNF-ASDGG-LWLAIM---S  199 (361)
T ss_pred             --cccc---cccCCCeEEEEcCccc----cCCC-CCHHH---------CC---EEEEEchhhc-CCCCc-eEEEEE---C
Confidence              5555   5889999999999974    3222 22211         13   6688899999 54532 444454   7


Q ss_pred             HHHHHHHHHhhh----------------------ccccCChHHHHHHHHHcCCCCCCChhHHHHHHH--HHHHHHHHHHH
Q 009517          370 AEVREQIYKVAS----------------------VNLCSNISGQILASLVMSPPKVGDESYESYCAE--RDGILSSLARR  425 (533)
Q Consensus       370 ~~~~~~l~~~~~----------------------~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~--~~~~~~~~~~~  425 (533)
                      +++++++.....                      +...++.....++..+++          ...++  ++.+.++.++.
T Consensus       200 ~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~----------~l~~~gg~e~~~~r~~~l  269 (361)
T TIGR01366       200 PAALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQID----------WMNGNGGLDWAVARTADS  269 (361)
T ss_pred             HHHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHH----------HHHHccCHHHHHHHHHHH
Confidence            777766552210                      112223333334444442          11121  45666788888


Q ss_pred             HHHHHHHHhcCCCceEec-CC---ceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCce
Q 009517          426 AKTLEDAFNSLEGITCNK-AE---GAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWH  501 (533)
Q Consensus       426 ~~~l~~~L~~~~g~~~~~-~~---gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~  501 (533)
                      .+++++.|.+++++.... ..   ......  +.++.+         + +..++ ...|+++||.+.+|...   -+.+.
T Consensus       270 ~~~l~~~l~~~~~~~~~~~~~~~~s~~v~~--v~~~~g---------~-~~~~v-~~~L~~~gI~i~~~~~~---l~~~~  333 (361)
T TIGR01366       270 SSRLYSWAQERPYATPFVTDPGKRSQVVGT--IDFVDD---------I-DAATV-AKILRANGIVDTEPYRK---LGRNQ  333 (361)
T ss_pred             HHHHHHHHHhCCCcccCCCChhhcccceEE--EECCCc---------c-CHHHH-HHHHHHCCCeeccCccc---cCCCc
Confidence            999999999985455432 11   111111  111211         1 22333 34557789999876422   12348


Q ss_pred             EEEEec--CCcCcHHHHHHHHHHHHHH
Q 009517          502 FRCTIL--PQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       502 iRis~~--~~~e~i~~~~~~l~~~l~~  526 (533)
                      ||||+.  ++.++|++++++|++++++
T Consensus       334 vRis~~~~~t~~di~~l~~al~~~~~~  360 (361)
T TIGR01366       334 LRVAMFPAIDPDDVEALTECVDWVVER  360 (361)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHHhh
Confidence            999995  8999999999999998775

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=99.58  E-value=4.7e-14  Score=142.26  Aligned_cols=240  Identities=18%  Similarity=0.224  Sum_probs=147.6

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCC
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEAT  248 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~  248 (533)
                      +.+..+.+|+.++.       .+-.++++|++.++..++.+++ .+||+|+++..+|-...+++...|+.+++++.. .+
T Consensus        68 I~eAe~~aA~~fGA-------d~t~flvnGsT~g~~a~i~a~~-~~gd~VLv~RN~HkSv~~alil~ga~Pvyi~p~-~~  138 (417)
T PF01276_consen   68 IKEAEELAARAFGA-------DKTFFLVNGSTSGNQAMIMALC-RPGDKVLVDRNCHKSVYNALILSGAIPVYIPPE-DN  138 (417)
T ss_dssp             HHHHHHHHHHHHTE-------SEEEEESSHHHHHHHHHHHHHT-TTTCEEEEETT--HHHHHHHHHHTEEEEEEEEE-E-
T ss_pred             HHHHHHHHHHhcCC-------CeEEEEecCchHHHHHHHHHhc-CCCCEEEEcCCcHHHHHHHHHHcCCeEEEecCC-cc
Confidence            45666666666642       2357889999999999999999 899999999999999999999999999998876 44


Q ss_pred             CCC----CCH-----HHHHHHHHHHHhcCCCeeE---EEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEcccccc-c
Q 009517          249 GWG----LET-----SEVKKQLEAAKAKGITVRA---LVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE-N  315 (533)
Q Consensus       249 ~~~----ld~-----~~l~~~i~~~~~~g~~~~~---iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~-~  315 (533)
                      .++    +++     +.++++|++.    +..++   ++|++|+. -|++++   +++|+++|+++++.|++||+|.. +
T Consensus       139 ~~gi~~~i~~~~~~~~~i~~~l~~~----p~~k~~~~vvlt~PTY-~Gv~~d---i~~I~~~~h~~~~~llvDEAhGah~  210 (417)
T PF01276_consen  139 EYGIIGGISPDEFNEEDIEEALKEH----PDAKAPRLVVLTSPTY-YGVCYD---IKEIAEICHKHGIPLLVDEAHGAHF  210 (417)
T ss_dssp             TTS-BEEB-GGGGSHHHHHHHHHHC----TTCHCESEEEEESS-T-TSEEE----HHHHHHHHCCTECEEEEE-TT-TTG
T ss_pred             ccCCccCCChhhhhHHHHHHHHHhC----ccccCceEEEEeCCCC-CeEEEC---HHHHHHHhcccCCEEEEEccccccc
Confidence            454    355     9999999874    34444   99999986 699988   99999999999999999999954 4


Q ss_pred             cccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCe-eEEEEEecCCH-HHHHHHHHhhh--ccccCChHHH
Q 009517          316 VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKR-GGYMEVTGFSA-EVREQIYKVAS--VNLCSNISGQ  391 (533)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~r-iG~v~~~~~~~-~~~~~l~~~~~--~~~~~~~~~q  391 (533)
                      .|. ..+ .+...+..+   ...+..+++++|.+|++.   ++. .+++.... +. --.+++.....  .+.+|+-+..
T Consensus       211 ~F~-~lp-~~a~~~gad---~~~~~~~~vvqS~HKtL~---altQts~lh~~~-~~~v~~~~~~~~l~~~~TTSPSY~lm  281 (417)
T PF01276_consen  211 GFH-PLP-RSALALGAD---RPNDPGIIVVQSTHKTLP---ALTQTSMLHVKG-DRIVDHERVNEALSMHQTTSPSYPLM  281 (417)
T ss_dssp             GCS-GGG-TTCSSTTSS----CTSBEEEEEEEHHHHSS---S-TT-EEEEEET-CCCTTHHHHHHHHHHHS-SS--HHHH
T ss_pred             cCC-CCc-cchhhccCc---cccccceeeeechhhccc---ccccceEEEecC-CCcccHHHHHHHHHHHcCCChHHHHH
Confidence            443 111 111111111   024567899999999984   555 45555532 21 11233333322  2233333333


Q ss_pred             HHHHHHcCCCCCCChhHHHH-HHHHHHHHHHHHHHHHHHHHHH---hcCCCceEecC
Q 009517          392 ILASLVMSPPKVGDESYESY-CAERDGILSSLARRAKTLEDAF---NSLEGITCNKA  444 (533)
Q Consensus       392 ~a~~~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L---~~~~g~~~~~~  444 (533)
                      +.+..+..          .. ..+-+++.++..++.+.+++.|   +++.++++..|
T Consensus       282 ASlD~a~~----------~m~~~~G~~l~~~~i~~a~~~R~~i~~~~~~~~~~~~~~  328 (417)
T PF01276_consen  282 ASLDVARA----------QMEEEEGRELLEEAIELAEEFRKKINRLNDIWGFKVLGP  328 (417)
T ss_dssp             HHHHHHHH----------HHSHHHHHHHHHHHHHHHHHHHHHHHHHCCT-SSEESS-
T ss_pred             HHHHHHHH----------HHhhhhhHHHHHHHHHHHHHHHHHHHhcCCCceEecCCc
Confidence            22222210          11 1223445555566666677776   55666665544

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=99.58  E-value=7e-12  Score=129.74  Aligned_cols=198  Identities=13%  Similarity=0.144  Sum_probs=135.5

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCC-----cccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCC
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHS-----QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN  215 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~-----~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g  215 (533)
                      |+++++++.+.+....   ...|.-.     .-+..+++.++++++        .+..+++++++.|+..++..+  .+|
T Consensus        94 ~~~vieAv~~~~~~y~---~l~~~l~~g~~g~r~~~le~~lA~l~g--------ae~alvv~sg~aAi~l~l~~l--~~G  160 (454)
T TIGR00474        94 AEEAIEAVTDAARGYS---NLEYDLETGKRGSRYSHVEGLLCELTG--------AEDALVVNNNAAAVLLALNTL--AKG  160 (454)
T ss_pred             CHHHHHHHHHHHhccc---chhccccccccchHHHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHh--CCc
Confidence            7999999988887532   2223211     114677888888864        334667788888998888664  589


Q ss_pred             CeEEEcCCcCcc------hHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCC--c--c
Q 009517          216 DGILCPIPQYPL------YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT--G--Q  285 (533)
Q Consensus       216 d~Vlv~~p~~~~------~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPt--G--~  285 (533)
                      |+|+++...|..      +...+...|++++.++.+.    ..|+++++++|++      +|++|++.+++|++  |  .
T Consensus       161 deVIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~~----~~~l~dle~aI~~------~T~lv~~~h~sN~~~~G~~~  230 (454)
T TIGR00474       161 KEVIVSRGELVEIGGSFRIPDVMEQSGAKLVEVGTTN----RTHLKDYEDAITE------NTALLLKVHTSNYRIVGFTE  230 (454)
T ss_pred             CEEEECCChhhhhcchhhHHHHHHHcCCEEEEeCCCC----CCCHHHHHHhcCc------CCEEEEEEccCcccccCCCC
Confidence            999999876432      2345677899999887542    3579999999977      89999999999995  6  3


Q ss_pred             CCCHHHHHHHHHHHHHcCCEEEEccccccccccC--CCCccc-HHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEE
Q 009517          286 VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVP--EKKFHS-FKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGY  362 (533)
Q Consensus       286 ~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~  362 (533)
                      +.+   +++|+++|++||+++|+|.....+.-.+  +.+..+ +... .++   ..|   +++.|.+|.++   |-..|+
T Consensus       231 ~~d---l~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~-~~~---GaD---iv~fSg~K~Lg---Gp~~G~  297 (454)
T TIGR00474       231 EVS---IAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEV-IAA---GVD---LVTFSGDKLLG---GPQAGI  297 (454)
T ss_pred             CCC---HHHHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccH-hHc---CCC---EEEecCccccC---CCeEEE
Confidence            566   9999999999999999997532210000  000111 1111 111   234   77889999884   445899


Q ss_pred             EEEecCCHHHHHHHH
Q 009517          363 MEVTGFSAEVREQIY  377 (533)
Q Consensus       363 v~~~~~~~~~~~~l~  377 (533)
                      +++   .+++++.+.
T Consensus       298 i~g---~~~~i~~l~  309 (454)
T TIGR00474       298 IVG---KKELIERLK  309 (454)
T ss_pred             EEE---CHHHHHhhh
Confidence            888   788877654

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>PRK15029 arginine decarboxylase; Provisional

Probab=99.58  E-value=5.8e-13  Score=143.86  Aligned_cols=177  Identities=16%  Similarity=0.133  Sum_probs=125.5

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCC
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEAT  248 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~  248 (533)
                      +.+..+..|+.++       .....+++||+|.++..++.+++ .+||+|+++..+|-+..+.+.+.|+.+++++... +
T Consensus       207 I~eAq~~aA~~fg-------A~~t~FlvNGST~gn~a~i~a~~-~~gd~Vlv~RN~HKSv~~al~L~ga~Pvyl~P~~-~  277 (755)
T PRK15029        207 FGESEKYAARVFG-------ADRSWSVVVGTSGSNRTIMQACM-TDNDVVVVDRNCHKSIEQGLILTGAKPVYMVPSR-N  277 (755)
T ss_pred             HHHHHHHHHHHhC-------CCcEEEEeCChhHHHHHHHHHhc-CCCCEEEeecccHHHHHHHHHHcCCeEEEecccc-c
Confidence            4555555666553       12457889999999999999998 8999999999999999999999999999986544 3


Q ss_pred             CCCC----C-----HHHHHHHHHHHH----hcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEcccccc-
Q 009517          249 GWGL----E-----TSEVKKQLEAAK----AKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE-  314 (533)
Q Consensus       249 ~~~l----d-----~~~l~~~i~~~~----~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~-  314 (533)
                      .+++    +     ++.++++|+...    ..+.+++++++++|+. -|++++   +++|+++|+++++.|++||+|.. 
T Consensus       278 ~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY-~Gv~~d---i~~I~~~~h~~~~~llvDEAhGah  353 (755)
T PRK15029        278 RYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTY-DGVCYN---AKEAQDLLEKTSDRLHFDEAWYGY  353 (755)
T ss_pred             ccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCC-cceeeC---HHHHHHHHHhcCCeEEEECccccc
Confidence            4443    4     899999997631    1122445899999986 689988   89999999999999999999954 


Q ss_pred             ccccCCCCcccHHHHH-hhcCCCCCCceEEEEecCCccCCCCCCCeeE-EEEE
Q 009517          315 NVYVPEKKFHSFKKVS-RSMGYGEKDISLVSFQSVSKGYYGECGKRGG-YMEV  365 (533)
Q Consensus       315 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG-~v~~  365 (533)
                      |.|.+.-+..+  .+. .......++  +++++|.+|++.   ++.-| ++++
T Consensus       354 ~~F~~~~p~~s--a~~~~~~~~~Gad--~~vvqStHKtL~---alTQaS~LHv  399 (755)
T PRK15029        354 ARFNPIYADHY--AMRGEPGDHNGPT--VFATHSTHKLLN---ALSQASYIHV  399 (755)
T ss_pred             cccCccccccc--cccccccccCCCc--eEEEEchhhccc---chhhhhhhee
Confidence            44543212101  110 000000122  488999999984   55544 4444

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=99.56  E-value=4.7e-12  Score=127.29  Aligned_cols=324  Identities=15%  Similarity=0.090  Sum_probs=181.4

Q ss_pred             CHHHHHHHHHHHhcCCCCC---ccccCCCcccHHHHHHHHHHHHhhcCCCCCCC--CEEEcCChHHHHHHHHHHhccCCC
Q 009517          141 SADSIERAWQILDQIPGRA---TGAYSHSQGIKGLRDTIAAGIEARDGFPADPN--DIFLTDGASPAVHMMMQLLIRSEN  215 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~---~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~--~i~~t~G~~~al~~~~~~l~~~~g  215 (533)
                      .+.+.++....+.+.....   ...|+-..-+.++.+...+...+.|+...+..  +|-. .+++.|...++.+++ +||
T Consensus        33 Sp~v~~al~S~l~nkyaeg~pg~ryy~G~~~id~iE~la~~ra~~lF~~~~~~w~anvqp-~SGs~An~av~~aLl-~pG  110 (399)
T PF00464_consen   33 SPAVREALGSDLTNKYAEGYPGKRYYGGCEYIDEIEELAIERAKELFGAEPKEWYANVQP-HSGSQANLAVYMALL-KPG  110 (399)
T ss_dssp             -HHHHHHHTSGGGGS-TTEETTEESSSSTHHHHHHHHHHHHHHHHHHT-STTTEEEE----SSHHHHHHHHHHHHT--TT
T ss_pred             CHHHHHHhCCcceeeccccCCCcccccCcchhhHHHHHHHHHHHHHhCCCcccceEEeec-CCchHHHHHHHHHHH-hhc
Confidence            3555555544444432100   11233344355666666677777777332111  3333 456688999999999 899


Q ss_pred             CeEEEcCCcCcchHH---H--H-----HHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCcc
Q 009517          216 DGILCPIPQYPLYSA---S--I-----ALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ  285 (533)
Q Consensus       216 d~Vlv~~p~~~~~~~---~--~-----~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~  285 (533)
                      |+|+..++...+|..   .  .     .....+.+.|+++++ +..+|.+++++.++..     ++++|++-.-..|-  
T Consensus       111 D~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~-~~~ID~d~l~~~a~~~-----kPklIi~G~S~y~~--  182 (399)
T PF00464_consen  111 DTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPD-TGLIDYDELEKLAKEH-----KPKLIICGASSYPR--  182 (399)
T ss_dssp             -EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TT-TSSB-HHHHHHHHHHH-------SEEEEE-SSTSS--
T ss_pred             CcEEecChhhcccccccccccccccccccceEEEEeeeeecC-CCeECHHHHHHHHhhc-----CCCEEEECchhccC--
Confidence            999999988776532   1  1     224467889999865 6789999999999997     89998876544432  


Q ss_pred             CCCHHHHHHHHHHHHHcCCEEEEcccc-ccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEE
Q 009517          286 VLAEENQRAIVDFCKKEGLVLLADEVY-QENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYME  364 (533)
Q Consensus       286 ~~s~~~l~~i~~l~~~~~~~lI~De~y-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~  364 (533)
                      .   -+++++.++|++.|.++++|-++ .+++-+|.  +.+...        +.|   |+.+|..|+|   +|-|.|.|.
T Consensus       183 ~---~d~~~~reIad~vga~l~~D~sH~~GLIa~g~--~~~P~~--------~AD---vvt~sThKtl---~GPrggiI~  243 (399)
T PF00464_consen  183 P---IDFKRFREIADEVGAYLMADISHIAGLIAGGL--FPNPFP--------YAD---VVTGSTHKTL---RGPRGGIIL  243 (399)
T ss_dssp             ------HHHHHHHHHHTT-EEEEE-TTTHHHHHTTS--S--GCC--------TSS---EEEEESSGGG----SSS-EEEE
T ss_pred             c---cCHHHHHHHHHhcCcEEEecccccccceehhe--ecCccc--------cce---EEEeeccccc---cccCceEEE
Confidence            2   23899999999999999999998 45554442  222111        234   7789999998   488889998


Q ss_pred             EecCC--------------HHHHHHHHHhhhcc--ccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 009517          365 VTGFS--------------AEVREQIYKVASVN--LCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKT  428 (533)
Q Consensus       365 ~~~~~--------------~~~~~~l~~~~~~~--~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (533)
                      +   +              +++.+.+.+..-..  .++.....++.+.+|..         ....+.++-.++..++.+.
T Consensus       244 ~---~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~e---------a~~~~fk~Ya~qVv~NAk~  311 (399)
T PF00464_consen  244 T---NKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKE---------ALSPEFKEYAKQVVKNAKA  311 (399)
T ss_dssp             E---S-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHH---------HTSHHHHHHHHHHHHHHHH
T ss_pred             E---cCCccccCCcccccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhc---------ccCHHHHHHHHHHHHHHHH
Confidence            8   6              78888887754322  22222222222223310         0011234455667778889


Q ss_pred             HHHHHhcCCCceEec-CCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCC-C-CCCceEEEE
Q 009517          429 LEDAFNSLEGITCNK-AEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ-V-PGTWHFRCT  505 (533)
Q Consensus       429 l~~~L~~~~g~~~~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~-~-~g~~~iRis  505 (533)
                      |.+.|.+. |++++. ......+|+++...          +.  +...+.+.|++.||.+..-...+. . -....|||+
T Consensus       312 La~~L~~~-G~~v~~ggTd~H~vlvd~~~~----------~~--~g~~a~~~Le~~gI~vnkn~iP~d~~~~~~sGlRlG  378 (399)
T PF00464_consen  312 LAEALQER-GFKVVTGGTDNHQVLVDLRSF----------GI--DGKEAEKALEEAGIIVNKNTIPGDRSPFVPSGLRLG  378 (399)
T ss_dssp             HHHHHHHT-T-EEGGGS-SSSEEEEEGGGG----------TS---HHHHHHHHHHTTEE-EEE--TTTSTTTT-SEEEEE
T ss_pred             HHHHHhhC-CcEEEECCCCCCeEEEEeccc----------cc--chHHHHHHHHhcCeeecccccCCCCCCCCCCEEEEC
Confidence            99999998 998875 33445667666411          11  222356789999998853211111 1 112379999


Q ss_pred             ec------CCcCcHHHHHH
Q 009517          506 IL------PQEDKIPAIVT  518 (533)
Q Consensus       506 ~~------~~~e~i~~~~~  518 (533)
                      ..      ..+++++++.+
T Consensus       379 T~~lT~rG~~e~dm~~iA~  397 (399)
T PF00464_consen  379 TPALTRRGMKEEDMKEIAE  397 (399)
T ss_dssp             SHHHHHTT--HHHHHHHHH
T ss_pred             CHHHHhCCCCHHHHHHHHh
Confidence            83      44555555544

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]

Probab=99.55  E-value=3.7e-13  Score=124.83  Aligned_cols=340  Identities=17%  Similarity=0.183  Sum_probs=212.7

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCC-CeEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-DGIL  219 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vl  219 (533)
                      +|+|+++...+|.....  +..+...    +|.+-...+....    ..-+-++++++++||..++++..+.-.+ .-|+
T Consensus        63 hp~VV~A~~kQmat~~t--N~RFlhd----~lv~cA~~l~stl----PeLsvc~F~NSGSEANDLALRLAR~ftkhqDvI  132 (452)
T KOG1403|consen   63 HPEVVRAGAKQMATIST--NNRFLHD----ELVQCARTLTSTL----PELSVCFFVNSGSEANDLALRLARNFTKHQDVI  132 (452)
T ss_pred             CHHHHHHHHHHHhHhcc--cchhhHH----HHHHHHHHHhhcC----CCceEEEEecCCchhhHHHHHHHHhhcccCceE
Confidence            58999999998886433  3333332    3333222222211    2245678999999999999998862122 3477


Q ss_pred             EcCCcCcchHHHHHH-------hCC---e--EEE-EecCC--CCCCC-----------CCHHHHHHHHHHHHhcCCCeeE
Q 009517          220 CPIPQYPLYSASIAL-------HGG---T--LVP-YYLDE--ATGWG-----------LETSEVKKQLEAAKAKGITVRA  273 (533)
Q Consensus       220 v~~p~~~~~~~~~~~-------~g~---~--~~~-v~~~~--~~~~~-----------ld~~~l~~~i~~~~~~g~~~~~  273 (533)
                      +.+-.|+++......       .|.   +  .+. .|+.+  .+.|.           .=.+.+++.+.+....|..+.+
T Consensus       133 tldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvyrGK~r~~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAA  212 (452)
T KOG1403|consen  133 TLDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDVYRGKFRDKMYPDADMGALYADPVKEICQDQLAKGQGVAA  212 (452)
T ss_pred             EEechhccceeeeeeccceeccCCCCcCCCceeEecCCccccccccccccCCcccchhhhhhHHHHHHHHHHhcCCcHHH
Confidence            777788877543321       111   1  111 11111  00011           1135677777777777777777


Q ss_pred             EEEeCCCCCCccCCCHH-HHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccC
Q 009517          274 LVVINPGNPTGQVLAEE-NQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGY  352 (533)
Q Consensus       274 iil~~p~NPtG~~~s~~-~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~  352 (533)
                      +|-.+-+.-.|.++|+. ..+++++..+.+|-+.|.||++.+|..-|. .++++..+  .+   -||     |.++.|.+
T Consensus       213 fiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG~-hyWafq~y--~f---iPD-----IVtmgKpm  281 (452)
T KOG1403|consen  213 FIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVGS-HYWAFQTY--NF---IPD-----IVTMGKPM  281 (452)
T ss_pred             HHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccch-hhhhhhhh--cc---ccc-----hheecccC
Confidence            77777788888765554 599999999999999999999999776553 55655432  12   477     66899999


Q ss_pred             CCCCCCeeEEEEEecCCHHHHHHHHHhh--h-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 009517          353 YGECGKRGGYMEVTGFSAEVREQIYKVA--S-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTL  429 (533)
Q Consensus       353 ~gl~G~riG~v~~~~~~~~~~~~l~~~~--~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  429 (533)
                       | .|.++++++.   .+++.+.+..-.  . .++++||.+++++.+.|+..            +-+.+.+.-++..++|
T Consensus       282 -G-NGhPVa~Vat---tkeIA~Af~atgv~YFNTyGGnPVsCAv~laVm~v~------------e~E~Lq~ha~~vG~~L  344 (452)
T KOG1403|consen  282 -G-NGHPVAAVAT---TKEIAQAFHATGVEYFNTYGGNPVSCAVGLAVMRVC------------EDENLQEHAQQVGEKL  344 (452)
T ss_pred             -C-CCCeeeEEec---cHHHHHHhccccceehhccCCCchhHHHHHHHHHHH------------hhhhHHHHHHHHHHHH
Confidence             5 7999999998   899998887522  1 67899999999999888521            1244555566666677


Q ss_pred             HHHHhcC----CCceEecCCceeEEecccCCCHHHHHHHHhcCCCChH-HHHHHHHHccceEEEcCCCCCCCCCCceEEE
Q 009517          430 EDAFNSL----EGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDA-FYCRRLLNATGIVLVPGSGFGQVPGTWHFRC  504 (533)
Q Consensus       430 ~~~L~~~----~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRi  504 (533)
                      ...|+++    +-+.-++.-|   +|+++++-.   |.....+.+... ..+.++-+.++|++..-     .++.+.+.|
T Consensus       345 ~~lL~~~k~kh~~IGDvRGvG---LFiGIdLVk---D~~tRtP~tk~A~~~v~rlke~y~VLlsaD-----GPh~NilKi  413 (452)
T KOG1403|consen  345 EVLLRRLKQKHECIGDVRGVG---LFIGIDLVK---DRKTRTPDTKEAHWVVNRLKELYRVLLSAD-----GPHRNILKI  413 (452)
T ss_pred             HHHHHHHhhhccceeccccce---EEEeeeeec---ccccCCCcHHHHHHHHHHHHHhhhEEEecC-----CCCCceeec
Confidence            7777665    2233334433   333344221   111111111122 23445555677988741     245557777


Q ss_pred             Ee--cCCcCcHHHHHHHHHHHHHHHHH
Q 009517          505 TI--LPQEDKIPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       505 s~--~~~~e~i~~~~~~l~~~l~~~~~  529 (533)
                      -+  +-++++.++.+..|++++.-+.+
T Consensus       414 KPPmCFneena~e~v~~ld~iLT~mee  440 (452)
T KOG1403|consen  414 KPPMCFNEENADEFVLGLDEILTVMEE  440 (452)
T ss_pred             CCCcccChhhHHHHHHHHHHHHHHHHH
Confidence            66  47889999999999998875443

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=99.54  E-value=7.2e-12  Score=121.64  Aligned_cols=331  Identities=14%  Similarity=0.114  Sum_probs=206.5

Q ss_pred             CHHHHHHHHHHHhcCCCC---CccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCe
Q 009517          141 SADSIERAWQILDQIPGR---ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDG  217 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~---~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~  217 (533)
                      .+.|.++.-..+.+....   ...-|+-..-..++.+...+...+.||  .+.-+|-..+|+ +|...++.+++ +|||+
T Consensus        39 S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LFg--a~~anVQPhSGs-~AN~av~~All-~pGDt  114 (413)
T COG0112          39 SPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFG--AEYANVQPHSGS-QANQAVYLALL-QPGDT  114 (413)
T ss_pred             CHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHHhC--CCccccCCCCch-HHHHHHHHHHc-CCCCe
Confidence            577888776666543211   122344455455666666677777777  445677777766 67777788888 89999


Q ss_pred             EEEcCCcCcchHHHH---HHhC--CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHH
Q 009517          218 ILCPIPQYPLYSASI---ALHG--GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQ  292 (533)
Q Consensus       218 Vlv~~p~~~~~~~~~---~~~g--~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l  292 (533)
                      |+-.+-.+.+|..--   ...|  .+.+.|+++.+ +..+|.|++++.+...     ++|+|+.-.-..|-  .++   +
T Consensus       115 imgm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd~e-t~~IDyD~~~k~a~e~-----kPK~ii~G~SaY~r--~id---~  183 (413)
T COG0112         115 IMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGVDPE-TGLIDYDEVEKLAKEV-----KPKLIIAGGSAYSR--PID---F  183 (413)
T ss_pred             EecccCCCCCcccCCCCCCccceeEEeEecccccc-cCccCHHHHHHHHHHh-----CCCEEEECcccccc--ccC---H
Confidence            999887777765322   2223  36777777765 5689999999999987     89988843322221  222   9


Q ss_pred             HHHHHHHHHcCCEEEEcccc-ccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHH
Q 009517          293 RAIVDFCKKEGLVLLADEVY-QENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAE  371 (533)
Q Consensus       293 ~~i~~l~~~~~~~lI~De~y-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~  371 (533)
                      +++.++|++.|.++++|-++ .+++-+|.  +++...        +.|   |+.+|.+|+|   .|-|.|.|++  .+.+
T Consensus       184 ~~~reIad~VGA~L~~DmAHiaGLVA~G~--~p~P~~--------~Ad---vVTtTTHKTl---rGPrGG~Il~--~~ee  245 (413)
T COG0112         184 KRFREIADEVGAYLMVDMAHVAGLIAGGV--HPNPLP--------HAD---VVTTTTHKTL---RGPRGGIILT--NDEE  245 (413)
T ss_pred             HHHHHHHHHhCceEEehHHHHHHHHhccc--CCCCCC--------ccc---eEeCCcccCC---CCCCceEEEe--ccHH
Confidence            99999999999999999998 56655543  222111        234   7789999998   4889999988  2358


Q ss_pred             HHHHHHHhhhccccCChHHHHHH--HHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCC-cee
Q 009517          372 VREQIYKVASVNLCSNISGQILA--SLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAE-GAM  448 (533)
Q Consensus       372 ~~~~l~~~~~~~~~~~~~~q~a~--~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-gg~  448 (533)
                      +.+.+.+.--....++++.-.++  +-++..         ......+.-.++..++.+.|.+.|.+. |++++..- -..
T Consensus       246 l~kkin~aVFPg~qggpl~HviAakaVa~~E---------al~p~fk~Ya~qVv~NAkaLAe~l~~~-G~~vvsGgTdnH  315 (413)
T COG0112         246 LAKKINSAVFPGLQGGPLMHVIAAKAVAFKE---------ALEPEFKEYAKQVVKNAKALAEALKER-GFKVVSGGTDNH  315 (413)
T ss_pred             HHHHhhhhcCCccCCChHHHHHHHHHHHHHH---------HcChhHHHHHHHHHHHHHHHHHHHHHc-CCeEecCCccce
Confidence            88877763322222233332222  222211         011112344455677888899999887 99887632 233


Q ss_pred             EEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCC-CCCC--CCCCceEEEEec------CCcCcHHHHHHH
Q 009517          449 YLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGS-GFGQ--VPGTWHFRCTIL------PQEDKIPAIVTR  519 (533)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~-~f~~--~~g~~~iRis~~------~~~e~i~~~~~~  519 (533)
                      .+.+++. +.+         .  +-..+..+|.+.||.+.--. .|..  +-....|||...      ..++++++..+-
T Consensus       316 l~lVDl~-~~~---------~--~Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~  383 (413)
T COG0112         316 LVLVDLR-SKG---------L--TGKKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEMEEIADL  383 (413)
T ss_pred             EEEEEcc-cCC---------C--CHHHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHHHHHHH
Confidence            4445555 211         1  12235678888999874311 1210  111225899872      456688888888


Q ss_pred             HHHHHHH
Q 009517          520 LTDFHKN  526 (533)
Q Consensus       520 l~~~l~~  526 (533)
                      |.++++.
T Consensus       384 I~~vl~~  390 (413)
T COG0112         384 IADVLDG  390 (413)
T ss_pred             HHHHHhc
Confidence            8888775

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=99.53  E-value=9.7e-14  Score=135.42  Aligned_cols=256  Identities=16%  Similarity=0.165  Sum_probs=165.7

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      .+++.+++.+....     ...|+...-..+|.+.++++++        .+..+++.+|+.+..++++.++ .|++.|++
T Consensus         8 ~~~m~~a~~~a~~g-----d~~Yg~D~~~~~l~~~i~~l~g--------~e~a~f~~sGT~An~~al~~~~-~~~~~vi~   73 (290)
T PF01212_consen    8 TPAMLEAMAAANVG-----DDAYGEDPTTARLEERIAELFG--------KEAALFVPSGTMANQLALRAHL-RPGESVIC   73 (290)
T ss_dssp             -HHEEHHHHHTTSB------CCTTSSHHHHHHHHHHHHHHT--------SSEEEEESSHHHHHHHHHHHHH-HTTEEEEE
T ss_pred             CHHHHHHHHccccC-----CcccCCChhHHHHHHHHHHHcC--------CCEEEEeCCCChHHHHHHHHHH-hcCCceec
Confidence            47777777444332     3368888878899999999875        4566789999999999999999 79999999


Q ss_pred             cCCcCcch---HHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCC-CccCCCHHHHHHHH
Q 009517          221 PIPQYPLY---SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP-TGQVLAEENQRAIV  296 (533)
Q Consensus       221 ~~p~~~~~---~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NP-tG~~~s~~~l~~i~  296 (533)
                      ..++|...   .......|.++++++..+.  ..+|+++|++.+.......+++++|+|++|+|- .|.++|.+++++|.
T Consensus        74 ~~~aHi~~~E~ga~~~~~G~~~~~l~~~~~--G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~  151 (290)
T PF01212_consen   74 ADTAHIHFDETGAIEELSGAKLIPLPSDDD--GKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAIS  151 (290)
T ss_dssp             ETTEHHHHSSTTHHHHHTTCEEEEEBECTG--TBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHH
T ss_pred             cccceeeeeccchhhHhcCcEEEECCCccc--CCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHH
Confidence            99876532   2233568999999998752  278999999999985333347999999999986 48999999999999


Q ss_pred             HHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHH
Q 009517          297 DFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQI  376 (533)
Q Consensus       297 ~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l  376 (533)
                      ++|++||+.++.|.+--.-.-  .....++..+...     -|   ++-.|++|.+    |...|.+++  .++++++..
T Consensus       152 ~~a~~~gl~lhmDGARl~~a~--~~~~~~~~e~~~~-----~D---~v~~~~tK~~----g~~~Gavl~--~~~~~i~~~  215 (290)
T PF01212_consen  152 ELAREHGLPLHMDGARLANAA--AALGVSLAEIAAG-----AD---SVSFGGTKNG----GAPGGAVLA--GNKEFIAKA  215 (290)
T ss_dssp             HHHHHHT-EEEEEETTHHHHH--CHHHHHHHHHHTT-----SS---EEEEETTSTT-----SSSEEEEE--ESHHHHHHH
T ss_pred             HHHHhCceEEEEehhhHHHhh--hcccccHHHHhhh-----CC---EEEEEEEccc----ccccceEEE--echHHHHHH
Confidence            999999999999987421100  0011233333322     24   4456899986    345566665  388876654


Q ss_pred             HHhhh-ccc---cCChHHH-----HHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEec
Q 009517          377 YKVAS-VNL---CSNISGQ-----ILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNK  443 (533)
Q Consensus       377 ~~~~~-~~~---~~~~~~q-----~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~  443 (533)
                      ..... ...   ....+++     .++...++.          |    .....+..++.+.|.+.|+.+ +..+..
T Consensus       216 ~~~~k~~gg~~~~~G~~~a~~~~~~~~l~~l~~----------~----~~~~~~~~~~A~~La~~l~~~-~~~~~~  276 (290)
T PF01212_consen  216 RRQRKRLGGGMRQAGVLAAAELYQFAALRALEL----------W----LERARHANAMAKRLAAGLEAL-GGVLPR  276 (290)
T ss_dssp             HHHHHHHTHHHHHTTHHHHHHHHHHHHHCHEEC----------S----HHHHHCHHHHHHCHHHCHHEE-CEEEET
T ss_pred             HHHHHHhccCeeecceeeeechhhHHHHHHHHh----------h----HHHHHHHHHHHHHHHHHHHHC-CCcccC
Confidence            44322 111   1112222     123333321          1    223345566677889999888 444433

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>PLN02263 serine decarboxylase

Probab=99.51  E-value=5.4e-11  Score=122.05  Aligned_cols=294  Identities=11%  Similarity=-0.010  Sum_probs=192.1

Q ss_pred             ccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC--CCCeEEEcCCcCcchHHHHHHhCCeEEEEecC
Q 009517          168 GIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS--ENDGILCPIPQYPLYSASIALHGGTLVPYYLD  245 (533)
Q Consensus       168 G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~--~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~  245 (533)
                      +..++.+.+.+|+.+.+|.+-+.-.=++|+||++++..++.+.+ +  +...|++++-+|.....++..+|.+++.+|++
T Consensus       130 ~s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aAR-e~~~~~vvy~S~~aH~Sv~KAa~llgi~~~~Vp~d  208 (470)
T PLN02263        130 HSRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGR-EVFPDGILYASRESHYSVFKAARMYRMECVKVDTL  208 (470)
T ss_pred             hHHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHH-hhcCCcEEEEcCCccHHHHHHHHhcCCcceEeccC
Confidence            46889999999999988843211124789999999999999886 3  33478889999999999999999999999986


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCC-----EEEEccccccccccCC
Q 009517          246 EATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGL-----VLLADEVYQENVYVPE  320 (533)
Q Consensus       246 ~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~-----~lI~De~y~~~~~~~~  320 (533)
                      +  ++.+|+++|+++|.+.   +.++-+|+.+-...++|.+=+   +++|.++|+++|+     |+.+|.+|.++..--.
T Consensus       209 ~--~g~mD~~aL~~aI~~d---~~~P~iVvataGTT~~GAiDp---i~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~  280 (470)
T PLN02263        209 V--SGEIDCADFKAKLLAN---KDKPAIINVNIGTTVKGAVDD---LDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFV  280 (470)
T ss_pred             C--CCcCcHHHHHHHHHhC---CCCcEEEEEEecCCCCcCCCC---HHHHHHHHHHcCCccCCeeEEEeccchhhHhhhc
Confidence            4  5689999999999763   112445556677889999966   9999999999997     9999999988654100


Q ss_pred             CCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHh----h--hccccCChH-----
Q 009517          321 KKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV----A--SVNLCSNIS-----  389 (533)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~----~--~~~~~~~~~-----  389 (533)
                      ...       +.+....+ ..-| ..+.+|.+ + .-+..|.++.   ....++.+..-    .  ..+...+..     
T Consensus       281 ~~~-------~~~df~~~-vDSI-svD~HK~l-~-~P~~cgvll~---R~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~al  346 (470)
T PLN02263        281 KRA-------PKVTFKKP-IGSV-SVSGHKFV-G-CPMPCGVQIT---RMEHINVLSSNVEYLASRDATIMGSRNGHAPI  346 (470)
T ss_pred             ccc-------cccCCCcC-ccEE-EECCcccc-C-CCcCEEEEEE---ehhhHhhhccChHhhCCCCCCcCCCCCcHHHH
Confidence            000       00100011 2223 45789976 3 5688898887   44444333211    0  112222222     


Q ss_pred             HHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce-EecCCceeEEecccCCCHHHHHHHHhcC
Q 009517          390 GQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGIT-CNKAEGAMYLFPRIQLPEKAIKAAEAEK  468 (533)
Q Consensus       390 ~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~~gg~~~~~~~~~~~~~~~~~~~~~  468 (533)
                      ...+....+            -.+.++++.++..++.+++.+.|++. |+. +..|.....+|.   .|.          
T Consensus       347 ~lW~~L~~~------------G~~G~~~~i~~~~~~A~~l~~~l~~~-g~~~~~~p~s~~V~f~---~p~----------  400 (470)
T PLN02263        347 FLWYTLNRK------------GYRGFQKEVQKCLRNAHYLKDRLREA-GISAMLNELSSTVVFE---RPK----------  400 (470)
T ss_pred             HHHHHHHHh------------CHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEeCCCceEEEEe---cCc----------
Confidence            222222222            12345666777778888999999988 654 455666555542   121          


Q ss_pred             CCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 009517          469 TVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       469 ~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~~  527 (533)
                         +..      ..+|..+.+      ...  .++|.+.  ++.+.++++++.|++..+.+
T Consensus       401 ---~~~------~~~gW~L~~------~~~--~~Hivvmphv~~~~id~fi~DL~~~~~~~  444 (470)
T PLN02263        401 ---DEE------FVRRWQLAC------QGN--IAHVVVMPSVTIEKLDYFLKELVEKRSTW  444 (470)
T ss_pred             ---hHH------hhcceEEcc------CCC--cEEEEEcCCCCHHHHHHHHHHHHHHHhhh
Confidence               111      124555553      122  5677774  57788999999888876654

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=99.51  E-value=8.3e-12  Score=129.08  Aligned_cols=272  Identities=11%  Similarity=0.084  Sum_probs=185.0

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC----C--
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS----E--  214 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~----~--  214 (533)
                      ++.+.+.+...+...-. ....|+   +..++.+.+..++.+.++.+ ..-.=.+|+|+++++.+++.+....    .  
T Consensus        75 ~~~a~~~~~~~~~~nl~-d~~~~p---~a~~~E~~~v~~l~~l~~~~-~~~~G~~t~GgTean~lal~aar~~~~~~~~~  149 (460)
T COG0076          75 PPVAAELLVSALNKNLG-DPDESP---AAAELEERVVNMLSDLLGAP-EEASGTFTSGGTEANLLALLAARERWRKRALA  149 (460)
T ss_pred             HHHHHHHHHHHHhhcCC-CcccCh---hHHHHHHHHHHHHHHHhCCC-CCCceEEEcChHHHHHHHHHHHHHHHHHHhhh
Confidence            55666666666665332 233443   57899999999999988854 2234588999999999888876411    0  


Q ss_pred             -C------CeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeE--EEEeCCCCCCcc
Q 009517          215 -N------DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRA--LVVINPGNPTGQ  285 (533)
Q Consensus       215 -g------d~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~--iil~~p~NPtG~  285 (533)
                       +      .+|+++.-.+..+..++..+|.....+++.+. ++.+|+++++++|.+.      +..  |+.+-++.+||.
T Consensus       150 ~~~~~~~~P~ii~s~~aH~s~~Kaa~~lG~~~~~v~~~~~-~~~id~~~l~~~i~~~------t~~g~vV~~aGtT~~G~  222 (460)
T COG0076         150 ESGKPGGKPNIVCSETAHFSFEKAARYLGLGLRRVPTVPT-DYRIDVDALEEAIDEN------TIGGVVVGTAGTTDTGS  222 (460)
T ss_pred             cccccCCCCeEEecCcchhHHHHHHHHhCCCceeEEeccC-ccccCHHHHHHHHHhh------ccCceEEEEecCCCCCc
Confidence             1      16999999999999999999999999999876 6799999999999984      433  777788999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEE
Q 009517          286 VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV  365 (533)
Q Consensus       286 ~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~  365 (533)
                      +=+   +++|.++|+++++++.+|.+|.++..--..+...   +.-.    .+.+..| ..+++|.  |++=..+||++.
T Consensus       223 iDd---i~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~---~~f~----l~~vdSI-t~d~HK~--g~aP~~~G~il~  289 (460)
T COG0076         223 IDD---IEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGR---WDFG----LEGVDSI-TVDGHKY--GLAPIGCGVVLF  289 (460)
T ss_pred             cCC---HHHHHHHHHHcCCcEEEEccccceeecccCccch---hhcC----CCCceEE-EECcccc--cCCCCCceEEEE
Confidence            855   9999999999999999999999876411111111   0111    2333334 5689995  446678899988


Q ss_pred             ecCCH-HHHHHHHHhh---------hccccCChHH-----HHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 009517          366 TGFSA-EVREQIYKVA---------SVNLCSNISG-----QILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLE  430 (533)
Q Consensus       366 ~~~~~-~~~~~l~~~~---------~~~~~~~~~~-----q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  430 (533)
                        .++ ++.+.+.-..         +.+...+..+     +++....|            -.+..+++.++..+.++++.
T Consensus       290 --rd~e~l~~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~l------------G~eGy~~l~~~~~~~a~~la  355 (460)
T COG0076         290 --RDEEALRRILIFADYYLPGGGIPNFTILGSRPGRQALALYANLRRL------------GREGYRKLLDRTLELARYLA  355 (460)
T ss_pred             --ECHHHhhhhhhcccccCCCCCcCceeEeeccchHHHHHHHHHHHHh------------CHhHHHHHHHHHHHHHHHHH
Confidence              355 3444433111         1111122222     22222222            13446777788888899999


Q ss_pred             HHHhcCCCceEec-CCceeEEe
Q 009517          431 DAFNSLEGITCNK-AEGAMYLF  451 (533)
Q Consensus       431 ~~L~~~~g~~~~~-~~gg~~~~  451 (533)
                      +.|++.+.++++. |.....+|
T Consensus       356 ~~l~~~~~~e~~~~p~l~~V~f  377 (460)
T COG0076         356 EELEKLGDFELVNEPELPIVAF  377 (460)
T ss_pred             HHHHhCCCcEeecCCccceEEE
Confidence            9999985588765 65554443

>PRK13578 ornithine decarboxylase; Provisional

Probab=99.51  E-value=8.4e-12  Score=133.62  Aligned_cols=180  Identities=17%  Similarity=0.189  Sum_probs=122.2

Q ss_pred             CCcc-cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHH-HHHhCCeEEEE
Q 009517          165 HSQG-IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS-IALHGGTLVPY  242 (533)
Q Consensus       165 ~~~G-~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~-~~~~g~~~~~v  242 (533)
                      ...| +.+..+.+|+.+    |   ...-.+++||++.++..++.+++ .+||+|+++..+|-+..+. +.+.|+.++++
T Consensus       171 ~~eG~i~eAq~~AA~~f----g---Ad~tyFlvNGTS~gn~a~i~a~~-~~Gd~VLvdRN~HKSv~hgaLiLsGa~PVYl  242 (720)
T PRK13578        171 IHEGAAKDAQKHAAKVF----N---ADKTYFVLNGTSASNKVVTNALL-TPGDLVLFDRNNHKSNHHGALIQAGATPVYL  242 (720)
T ss_pred             CCChHHHHHHHHHHHHh----C---CCceEEEeCChhHHHHHHHHHhc-CCCCEEEeecccHHHHHHHHHHHcCCeEEEe
Confidence            3344 345555555554    3   12356889999999999999999 8999999999999998885 88999999998


Q ss_pred             ecCCCCCCCC----CH-----HHHHHHHHHHH-h---cCCCeeEEEEeCCCCCCccCCCHHHHHHHHHH-HHHcCCEEEE
Q 009517          243 YLDEATGWGL----ET-----SEVKKQLEAAK-A---KGITVRALVVINPGNPTGQVLAEENQRAIVDF-CKKEGLVLLA  308 (533)
Q Consensus       243 ~~~~~~~~~l----d~-----~~l~~~i~~~~-~---~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l-~~~~~~~lI~  308 (533)
                      .... +.|++    +.     +.++++|++.. .   ..++.++++|++|+. -|+++.   +++|+++ ++.++ .|++
T Consensus       243 ~P~~-n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTY-dG~~yd---i~~I~~~~~h~~~-~llv  316 (720)
T PRK13578        243 ETAR-NPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTY-DGTIYN---ARQVVDKIGHLCD-YILF  316 (720)
T ss_pred             eccc-cccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCC-cceeec---HHHHHHHhhccCC-cEEE
Confidence            7665 34553    54     44888887641 0   111258999999876 699998   7888887 67777 9999


Q ss_pred             cccccc-ccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCee-EEEEE
Q 009517          309 DEVYQE-NVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRG-GYMEV  365 (533)
Q Consensus       309 De~y~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~ri-G~v~~  365 (533)
                      ||+|.. +.|.+.-+..+  ...-+.+.  ++.-+++++|.+|.+.   ++-- ++++.
T Consensus       317 DEAhgah~~F~p~~~~~p--~~al~~Ga--D~p~i~v~QStHKtL~---alTQaS~LHv  368 (720)
T PRK13578        317 DSAWVGYEQFIPMMADCS--PLLLELNE--NDPGIFVTQSVHKQQA---GFSQTSQIHK  368 (720)
T ss_pred             eCcchhhhccCcccccCC--hhhhhcCC--CCCCeEEEEChhhcch---hhhhHhhhhc
Confidence            999965 33432100011  11112221  1234789999999984   5443 44544

>PLN02452 phosphoserine transaminase

Probab=99.49  E-value=2.3e-11  Score=122.90  Aligned_cols=319  Identities=15%  Similarity=0.115  Sum_probs=196.4

Q ss_pred             cCCCCHHHHHHHHHHHhcCCCC--CccccCC-CcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC
Q 009517          137 QGLFSADSIERAWQILDQIPGR--ATGAYSH-SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS  213 (533)
Q Consensus       137 ~~~~p~~v~~~~~~~~~~~~~~--~~~~Y~~-~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~  213 (533)
                      |..+|++|++++.+.+.+..+.  +...... ..-..++.+.+.+.+.+.++++-+.+-+++..|++.+++.++..++ .
T Consensus        15 P~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ea~~~nl~-~   93 (365)
T PLN02452         15 PATLPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNYEVLFLQGGASTQFAAIPLNLC-K   93 (365)
T ss_pred             CCCCCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEeCccHHHHHHHHHhcC-C
Confidence            3444899999998876432110  1111111 1114566677777777777743333345666889999999999998 6


Q ss_pred             CCCeEEEcCCcCcc--hHHHHHHhCCeEEEEecCCCCCC--CCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCH
Q 009517          214 ENDGILCPIPQYPL--YSASIALHGGTLVPYYLDEATGW--GLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAE  289 (533)
Q Consensus       214 ~gd~Vlv~~p~~~~--~~~~~~~~g~~~~~v~~~~~~~~--~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~  289 (533)
                      +|+++++..-+..+  +...++.+|...+..... ..+|  .+++++++.        .++.+.|.+++-...||+.+. 
T Consensus        94 ~~~~~l~~~~G~fg~r~~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~~~~--------~~~~~~v~~~hnETstGv~~~-  163 (365)
T PLN02452         94 PGDKADFVVTGSWSKKAAKEAKKYCKTNVIASGK-DEKYTKIPSVSEWEL--------TPDAKFVHICANETIHGVEFK-  163 (365)
T ss_pred             CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecC-CCCCCCCCChHHcCC--------CCCCcEEEECCCCCCCcEecC-
Confidence            88887776655444  456777788644433222 2222  356666522        125778888888889999633 


Q ss_pred             HHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCC
Q 009517          290 ENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFS  369 (533)
Q Consensus       290 ~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~  369 (533)
                       .++++.      ++++|+|.+.+-    +..+ .++..    +     +  ++ +.|..|++ |++|  +|.+++   .
T Consensus       164 -~~~~i~------~~~lvVDa~Ss~----g~~p-idv~~----~-----~--v~-~~saqK~l-GP~G--l~~v~v---r  213 (365)
T PLN02452        164 -DYPDVG------NVPLVADMSSNF----LSKP-VDVSK----Y-----G--VI-YAGAQKNV-GPSG--VTIVII---R  213 (365)
T ss_pred             -cccccC------CCeEEEECCccc----cCcc-cCHHH----c-----C--EE-EEeccccc-CCCC--eEEEEE---c
Confidence             144443      289999999874    2222 22211    1     2  33 46899999 8898  566666   7


Q ss_pred             HHHHHHHHHhh-------------hccccCChHHHHHHHHHcCCCCCCChhHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 009517          370 AEVREQIYKVA-------------SVNLCSNISGQILASLVMSPPKVGDESYESYCA---ERDGILSSLARRAKTLEDAF  433 (533)
Q Consensus       370 ~~~~~~l~~~~-------------~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~L  433 (533)
                      +++++.+....             +...+++....+++..+|+           |+.   -++.+.++.+++++++++.|
T Consensus       214 ~~~l~~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~-----------~l~~~gGl~~~~~r~~~~a~~l~~~l  282 (365)
T PLN02452        214 KDLIGNARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFE-----------DLLAQGGLKAMEKRNIRKADLLYDAI  282 (365)
T ss_pred             HHHHhhcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHH-----------HHHHccCHHHHHHHHHHHHHHHHHHH
Confidence            77776543210             1224667777777777774           222   26788889999999999999


Q ss_pred             hcCCCceE--ecC--CceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEe--c
Q 009517          434 NSLEGITC--NKA--EGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTI--L  507 (533)
Q Consensus       434 ~~~~g~~~--~~~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~--~  507 (533)
                      ++.+|+..  ..+  +..+.+.+.++..            .....| .+.++++|+...+|..-   -|  -+|+|.  +
T Consensus       283 ~~~~G~y~~~~~~~~rs~~~vsF~~~~~------------~~~~~f-~~~~~~~g~~~~~G~r~---~g--g~R~s~yna  344 (365)
T PLN02452        283 DESNGFYVCPVEKSVRSLMNVPFTLGGS------------ELEAEF-VKEAAKAGMVQLKGHRS---VG--GMRASIYNA  344 (365)
T ss_pred             HhCCCcccCCCChHHhCCeEEEEEcCCc------------hhHHHH-HHHHHHCCCcccCCccc---cC--ceEEECcCC
Confidence            98767611  111  2333333333311            123444 46678899999998753   22  399999  3


Q ss_pred             CCcCcHHHHHHHHHHHHH
Q 009517          508 PQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       508 ~~~e~i~~~~~~l~~~l~  525 (533)
                      .+.++++.+++.|+++-+
T Consensus       345 ~~~~~v~~L~~~m~~f~~  362 (365)
T PLN02452        345 MPLAGVEKLVAFMKDFQA  362 (365)
T ss_pred             CCHHHHHHHHHHHHHHHH
Confidence            787777766666665543

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=99.49  E-value=1.1e-11  Score=125.27  Aligned_cols=317  Identities=12%  Similarity=-0.022  Sum_probs=193.3

Q ss_pred             HHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCC
Q 009517          144 SIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIP  223 (533)
Q Consensus       144 v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p  223 (533)
                      .++++.+.+-.     ..++.+.  ..++.+.+.+.+.+.++.+-+.+-++++.||+.+++.++..++.++|++|++.. 
T Consensus        19 ~~~~~~~~~~~-----~~HRs~~--F~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~~~g~~vLv~g-   90 (374)
T TIGR01365        19 SIEELKNAPLG-----RSHRSKL--GKEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLGCRGVDVLAWE-   90 (374)
T ss_pred             hHHHHhhhhcc-----cCcCCHH--HHHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCCCCCCeEEEEC-
Confidence            45555444432     3344443  567777777777777774323333567889999999999999833788888865 


Q ss_pred             cCcch-H-HHHHHhCC-eEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHH
Q 009517          224 QYPLY-S-ASIALHGG-TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (533)
Q Consensus       224 ~~~~~-~-~~~~~~g~-~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~  300 (533)
                      .|..- . .+++.+|. .+..+....  +-.+|+++++.   .        +.|+++|....||+..+   +++++..+ 
T Consensus        91 ~FG~r~~~eia~~~g~~~v~~l~~~~--g~~~~~~~ve~---~--------~~v~~vhnETSTGv~np---v~~i~~~~-  153 (374)
T TIGR01365        91 SFGKGWVTDVTKQLKLPDVRVLEAEY--GKLPDLKKVDF---K--------NDVVFTWNGTTSGVRVP---NGDFIPAD-  153 (374)
T ss_pred             HHHHHHHHHHHHhcCCCCcEEEcCCC--CCCCCHHHcCC---C--------CCEEEecCCCchheecc---cccccccc-
Confidence            55553 4 78888999 477776443  33678998873   1        12667788889999998   44444222 


Q ss_pred             HcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHh-
Q 009517          301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV-  379 (533)
Q Consensus       301 ~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~-  379 (533)
                       ++.++|+|.+-+-   .+ .+ ..+.           . -.+++.|-.|+++++||+  +++++   +++.++..... 
T Consensus       154 -~~~lliVDavSs~---g~-~~-l~~d-----------~-iDv~~tgsQK~L~~ppGl--s~v~v---s~~Al~~~~~~~  210 (374)
T TIGR01365       154 -REGLTICDATSAA---FA-QD-LDYH-----------K-LDVVTFSWQKVLGGEGAH--GMLIL---SPRAVARLESYT  210 (374)
T ss_pred             -CCCcEEEEccchh---cC-CC-CChh-----------H-CcEEEEechhccCCCCce--EEEEE---CHHHHHHHhhcC
Confidence             5899999998874   22 22 1111           1 126688889999766664  56665   77776654421 


Q ss_pred             ---------------------h--hccccCChHHHHHHHHHcCCCCCCChhHHHHHH--HHHHHHHHHHHHHHHHHHHHh
Q 009517          380 ---------------------A--SVNLCSNISGQILASLVMSPPKVGDESYESYCA--ERDGILSSLARRAKTLEDAFN  434 (533)
Q Consensus       380 ---------------------~--~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~  434 (533)
                                           .  ++...++....+++..+|.          ...+  -++.+.++++++++.+++.++
T Consensus       211 ~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~----------~i~~egGle~~~~Rh~~~a~~l~~~l~  280 (374)
T TIGR01365       211 PAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALK----------WAESIGGLKPLIARADDNLAVLEAFVA  280 (374)
T ss_pred             CCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHH----------HHHHccCHHHHHHHHHHHHHHHHHHHH
Confidence                                 0  1222334444444444442          1222  278888999999999999999


Q ss_pred             cCCC-ceEecC----CceeEEecccCCCHHHHHHHH-hcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec-
Q 009517          435 SLEG-ITCNKA----EGAMYLFPRIQLPEKAIKAAE-AEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-  507 (533)
Q Consensus       435 ~~~g-~~~~~~----~gg~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-  507 (533)
                      ++ | +.+...    .......+.++.+. . +... ..+++-... +...|+++||.+.+|..--  . ...|||+.. 
T Consensus       281 ~l-g~l~~~~~~~~~rS~tvt~v~~~~~~-~-~~~~~~~~~~~~~~-~~~~l~~~gi~i~~G~~~~--~-~~~fRIg~~G  353 (374)
T TIGR01365       281 KN-NWIHFLAETPEIRSNTSVCLKVVDPA-I-DALDEDAQADFAKE-LISTLEKEGVAYDIGSYRD--A-PSGLRIWCGA  353 (374)
T ss_pred             HC-CCcccCCCChhhcCCCeEEEEeCCcc-c-cccccchhhHHHHH-HHHHHHHCCEEEecccccc--C-CCceEEecCC
Confidence            99 6 665542    12222222222110 0 0000 000000122 4566778899999876532  2 248999993 


Q ss_pred             -CCcCcHHHHHHHHHHHHH
Q 009517          508 -PQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       508 -~~~e~i~~~~~~l~~~l~  525 (533)
                       ++.++|+.+++.|.=+.+
T Consensus       354 ~i~~~di~~l~~~l~~~~~  372 (374)
T TIGR01365       354 TVEKSDLECLCPWLDWAFA  372 (374)
T ss_pred             cCCHHHHHHHHHHHHHHHh
Confidence             899999999999875543

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.47  E-value=8.2e-11  Score=131.44  Aligned_cols=320  Identities=13%  Similarity=0.092  Sum_probs=189.8

Q ss_pred             ccccCC---CcccHHHHHHHHHHHHhhcCCCCCCCCEEEcC-ChHHHHHHHHHHhc---cCCCC----eEEEcCCcCcch
Q 009517          160 TGAYSH---SQGIKGLRDTIAAGIEARDGFPADPNDIFLTD-GASPAVHMMMQLLI---RSEND----GILCPIPQYPLY  228 (533)
Q Consensus       160 ~~~Y~~---~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~-G~~~al~~~~~~l~---~~~gd----~Vlv~~p~~~~~  228 (533)
                      .+-|.|   .+|..++...+.+++.+..|.    +++-+.. |++++....+.++.   ..+|+    +|++++..|...
T Consensus       528 ~hP~qp~e~~qG~l~~i~e~q~~l~eltG~----d~~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~sn  603 (954)
T PRK05367        528 LHPFAPAEQAAGYRELIDQLEAWLAEITGY----DAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTN  603 (954)
T ss_pred             cCCCChHHHHHHHHHHHHHHHHHHHHHHCC----CCEEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhh
Confidence            344555   467788888888998888773    3565555 55555434333322   13554    599999999888


Q ss_pred             HHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEE
Q 009517          229 SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLA  308 (533)
Q Consensus       229 ~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~  308 (533)
                      ...+...|.+++.++++..  ..+|+++|++++++.   +.++.+|++.+|++-++...+   +++|+++|+++|+++++
T Consensus       604 p~sa~~~G~~vv~v~~d~~--G~iD~~~L~~~i~~~---~~~la~V~it~pst~G~~e~~---I~eI~~i~h~~G~~v~V  675 (954)
T PRK05367        604 PASAVMAGMKVVVVACDEN--GNIDLDDLRAKAEEH---ADNLAAIMITYPSTHGVFEET---IREICEIVHEHGGQVYL  675 (954)
T ss_pred             HHHHHHCCCEEEEECCCCC--CCcCHHHHHHHHhcc---CCCeEEEEEEcCCCCeeecCC---HHHHHHHHHHcCCEEEE
Confidence            8888999999999998753  379999999999752   125788888899876444455   99999999999999999


Q ss_pred             ccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCC---CeeEEEEEecCCHHHHHHHHHhh-----
Q 009517          309 DEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG---KRGGYMEVTGFSAEVREQIYKVA-----  380 (533)
Q Consensus       309 De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G---~riG~v~~~~~~~~~~~~l~~~~-----  380 (533)
                      |.++..... +-   ...    .++   ..|   ++..+.+|+|+.+.|   -.+|++.+   .+.+...+....     
T Consensus       676 DgA~~~al~-~l---~~p----g~~---GAD---i~~~s~HK~f~~P~G~GGPg~G~l~v---r~~l~p~lpg~~v~~~~  738 (954)
T PRK05367        676 DGANMNAQV-GL---ARP----GDI---GAD---VSHLNLHKTFCIPHGGGGPGVGPIGV---KAHLAPFLPGHPVQIAG  738 (954)
T ss_pred             ECcChhhcc-CC---CCh----hhc---CCC---EEEecCcccCCCCcCCCCCceEEEee---cccccccCCCCccCcCC
Confidence            999963221 11   110    112   234   677889999743222   33777776   444333221110     


Q ss_pred             --h--ccccCChHHHHHHHH-HcCCCCCCChhHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeE--Ee
Q 009517          381 --S--VNLCSNISGQILASL-VMSPPKVGDESYESY--CAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMY--LF  451 (533)
Q Consensus       381 --~--~~~~~~~~~q~a~~~-~L~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~--~~  451 (533)
                        .  .+.+.+..++..+.. +.        .|-..  .+.++++.+....+.+++.+.|.+...+.+..+.+-++  ++
T Consensus       739 ~~~~~g~v~ta~~g~al~~~~a~--------~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~~~~~~~~~~~~~~~e~i  810 (954)
T PRK05367        739 GETGIGAVSAAPFGSASILPISW--------MYIRMMGAEGLRQATEVAILNANYIAKRLKDHYPVLYTGANGRVAHECI  810 (954)
T ss_pred             CCCCcCcchhHHHHHHHHHHHHH--------HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhhcCccccCCCCCcccceE
Confidence              0  111112222211110 10        11001  12244445555578888999887642333333222100  11


Q ss_pred             ccc-CCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHHHHHH
Q 009517          452 PRI-QLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFHKNFM  528 (533)
Q Consensus       452 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~~~  528 (533)
                      +++ +++..       .+. ....+. +.|.++|+...- ..|.   ..+.+||++.  .+.++|++++++|..+.++..
T Consensus       811 ~~~~~~~~~-------~g~-~~~di~-krL~d~G~~~~t-~~~p---v~~~l~i~ptE~~s~~elDr~~~al~~i~~e~~  877 (954)
T PRK05367        811 LDLRPLKES-------TGI-TVDDIA-KRLIDYGFHAPT-MSFP---VAGTLMVEPTESESKAELDRFCDAMIAIRAEID  877 (954)
T ss_pred             EEeeccccc-------CCC-CHHHHH-HHHHHCCCeEee-cCCc---cCCEEEEEeeecCCHHHHHHHHHHHHHHHHHHH
Confidence            122 11110       011 123444 445778997654 2343   2337899996  788899999999998888766


Q ss_pred             H
Q 009517          529 D  529 (533)
Q Consensus       529 ~  529 (533)
                      +
T Consensus       878 ~  878 (954)
T PRK05367        878 E  878 (954)
T ss_pred             H
Confidence            5

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=99.47  E-value=1e-11  Score=132.82  Aligned_cols=168  Identities=13%  Similarity=0.110  Sum_probs=118.1

Q ss_pred             CCcc-cHHHHHHHHHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEE
Q 009517          165 HSQG-IKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPY  242 (533)
Q Consensus       165 ~~~G-~~~lr~aia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v  242 (533)
                      ...| +.+..+.+|+.+    |    ++ -.+++||++.++..++.+++ .+||+|+++..+|-+..+++.+.|+.++++
T Consensus       192 ~~~G~i~eAe~~AA~~f----g----Ad~tyfvvNGTS~~n~av~~a~~-~~Gd~VLvdRN~HKSv~haLilsga~PVYl  262 (714)
T PRK15400        192 DHSGPHKEAEEYIARVF----N----ADRSYMVTNGTSTANKIVGMYSA-PAGSTVLIDRNCHKSLTHLMMMSDVTPIYF  262 (714)
T ss_pred             CCChHHHHHHHHHHHHh----C----CCcEEEEeCchHHHHHHHHHHhc-CCCCEEEeecccHHHHHHHHHHcCCeEEEe
Confidence            3344 345555555554    3    34 56889999999999999998 899999999999999999999999999998


Q ss_pred             ecCCCCCCCC----C-----HHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccc
Q 009517          243 YLDEATGWGL----E-----TSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQ  313 (533)
Q Consensus       243 ~~~~~~~~~l----d-----~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~  313 (533)
                      +... +.|++    +     .+.++++|+..... +++++++|++|+. -|+++.   +++|+++|+.++  |++||+|.
T Consensus       263 ~P~r-n~~Gi~g~I~~~~~~~e~i~~~i~~~p~a-k~p~~~vit~pTY-dG~~yd---~~~I~~~~~~~~--ilvDEAwg  334 (714)
T PRK15400        263 RPTR-NAYGILGGIPQSEFQHATIAKRVKETPNA-TWPVHAVITNSTY-DGLLYN---TDFIKKTLDVKS--IHFDSAWV  334 (714)
T ss_pred             cccc-cccCCccCCCccccCHHHHHHHHHhCccc-cCccEEEEECCCC-ccEecC---HHHHHHHhCCCC--EEEEccch
Confidence            7654 34543    4     89999999764211 1233788888854 799998   788888888777  68999996


Q ss_pred             cc-cccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCC
Q 009517          314 EN-VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYG  354 (533)
Q Consensus       314 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~g  354 (533)
                      .. .|.+.-+..+  .+....   +++..+++++|.+|.+++
T Consensus       335 ah~~F~p~~~~~s--am~~ga---~~~~~i~vtQStHKtL~a  371 (714)
T PRK15400        335 PYTNFSPIYEGKC--GMSGGR---VEGKVIYETQSTHKLLAA  371 (714)
T ss_pred             hhhccCcccCCcC--hhhcCC---CCCCceEEEEchhhcccc
Confidence            63 3433211111  111111   233457899999999853

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.45  E-value=3.5e-11  Score=131.31  Aligned_cols=318  Identities=14%  Similarity=0.118  Sum_probs=187.1

Q ss_pred             ccccCC---CcccHHHHHHHHHHHHhhcCCCCCCCCEEEcC-ChHHHHHHHHHHhcc------CCC-CeEEEcCCcCcch
Q 009517          160 TGAYSH---SQGIKGLRDTIAAGIEARDGFPADPNDIFLTD-GASPAVHMMMQLLIR------SEN-DGILCPIPQYPLY  228 (533)
Q Consensus       160 ~~~Y~~---~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~-G~~~al~~~~~~l~~------~~g-d~Vlv~~p~~~~~  228 (533)
                      .+-|.|   .+|+.++...+.+++.+..|.+.    +-+-. +++.+-...+.++..      +++ ++|+++.-.|+..
T Consensus       529 ~hPyqp~e~sQG~lq~i~elq~~l~eLtGmd~----~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtN  604 (954)
T PRK12566        529 LHPFAPREQAEGYRAMIDELEAWLCAITGFDA----ICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTN  604 (954)
T ss_pred             CCCCCchhhhcCHHHHHHHHHHHHHHHHCCCe----EeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccC
Confidence            366888   88999988889999888877443    33333 344444344444331      122 5788888777655


Q ss_pred             HHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEE
Q 009517          229 SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLA  308 (533)
Q Consensus       229 ~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~  308 (533)
                      ...+...|.+++.++.+++  ..+|+++|++.+++.   ..++.+|++.+|++-++.   ++.+++|+++|+++|.++++
T Consensus       605 pasa~~~GieVv~Vp~D~~--G~iDle~L~a~I~~~---~~~laaVmiT~Pnt~Gv~---e~~V~eI~~iah~~Galv~v  676 (954)
T PRK12566        605 PASAQMAGMRVVIVECDPD--GNVDLDDLKAKAAAA---GDRLSCLMITYPSTHGVY---EEGIREICEVVHQHGGQVYM  676 (954)
T ss_pred             HHHHHHCCCEEEEeccCCC--CCcCHHHHHHHhhcc---CCCEEEEEEEecCcCcee---cchHHHHHHHHHHcCCEEEE
Confidence            6667888999999999853  379999999999732   237888888899875544   35599999999999999999


Q ss_pred             ccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCC---CeeEEEEEecCCHHHHHHHHHhh-----
Q 009517          309 DEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG---KRGGYMEVTGFSAEVREQIYKVA-----  380 (533)
Q Consensus       309 De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G---~riG~v~~~~~~~~~~~~l~~~~-----  380 (533)
                      |.++..-.. +   ....    .++   ..|   |+..++.|+|.++-|   .-+|.+.+   .+.+...+...-     
T Consensus       677 DgA~~~a~~-~---l~~P----g~~---GAD---i~~~s~HKtf~~P~G~GGP~vG~iav---~~~L~pfLp~~P~~d~~  739 (954)
T PRK12566        677 DGANLNAQV-G---LARP----ADI---GAD---VSHMNLHKTFCIPHGGGGPGMGPIGV---RAHLAPFVANHPVVPVE  739 (954)
T ss_pred             EeeChhhcc-C---CCCh----hhc---CCC---EEEecCCcccCcCccCCCCccchhhh---hhhhhhhccCCCCcCCC
Confidence            998852111 1   1111    122   345   778899998842222   33444433   333333322110     


Q ss_pred             ------hccccCChHH---HHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEe
Q 009517          381 ------SVNLCSNISG---QILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLF  451 (533)
Q Consensus       381 ------~~~~~~~~~~---q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~  451 (533)
                            ..+++....+   ..++...+...        .+ + +.+.......+.+++.+.|.+..++.+..+.+-+|--
T Consensus       740 G~~~r~ga~S~~~~gsa~~l~~A~~Yi~~l--------G~-e-Lk~aa~~ailnAnYla~rL~~~~~v~~~~~~~~~~hE  809 (954)
T PRK12566        740 GPDPNNGAVSAAPWGSASILPISWMYIAMM--------GP-Q-LADASEVAILSANYLANQLGGAFPVLYRGRNERVAHE  809 (954)
T ss_pred             CCCCCCCceeecccchHHHHHHHHHHHHHH--------CH-H-HHHHHHHHHHHHHHHHHHhHhhCCCCcCCCCCCeeeE
Confidence                  0111111111   11122222110        01 1 3444444456778889988764345443322322211


Q ss_pred             cccC---CCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHHHH
Q 009517          452 PRIQ---LPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       452 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~  526 (533)
                      +.+.   ++..       .+. +...+.++|+ ++||...- ..|.   ..+.+||++.  .+.++|++++++|..+.++
T Consensus       810 fii~~~~l~~~-------~g~-~~~dvakRL~-d~Gihapt-~~fP---v~~~LmIepTE~eskeEIDrf~eAL~~I~~e  876 (954)
T PRK12566        810 CILDLRPLKAQ-------TGI-SEEDVAKRLM-DYGFHAPT-MSFP---VPGTLMVEPTESESKAELDRFVEAMLSIRAE  876 (954)
T ss_pred             EEEEccccccc-------cCC-CHHHHHHHHH-HCCcEEeE-Eeec---cCCEEEEEeeeeCCHHHHHHHHHHHHHHHHH
Confidence            1122   2210       112 2344555555 88987543 3342   2448999996  7888999999999998887


Q ss_pred             HHH
Q 009517          527 FMD  529 (533)
Q Consensus       527 ~~~  529 (533)
                      ..+
T Consensus       877 ~~~  879 (954)
T PRK12566        877 IGK  879 (954)
T ss_pred             HHH
Confidence            653

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.44  E-value=1.9e-10  Score=126.48  Aligned_cols=319  Identities=14%  Similarity=0.089  Sum_probs=188.7

Q ss_pred             ccccCC---CcccHHHHHHHHHHHHhhcCCCCCCCCE-EEcCChHHHHHHHHHHhcc-------CCCCeEEEcCCcCcch
Q 009517          160 TGAYSH---SQGIKGLRDTIAAGIEARDGFPADPNDI-FLTDGASPAVHMMMQLLIR-------SENDGILCPIPQYPLY  228 (533)
Q Consensus       160 ~~~Y~~---~~G~~~lr~aia~~~~~~~g~~~~~~~i-~~t~G~~~al~~~~~~l~~-------~~gd~Vlv~~p~~~~~  228 (533)
                      .+-|.|   .+|..++...+.+++.+..|.+    ++ +..+|++++-.+.+.++..       ...++|+++.-.+...
T Consensus       516 ~hPyqPe~~sqG~lq~i~elq~~l~eltGmd----~~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtn  591 (939)
T TIGR00461       516 IHPFQPSNQVEGYQELIAQLEKWLCSITGFD----AISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTN  591 (939)
T ss_pred             cCCCCchHHhHHHHHHHHHHHHHHHHHHCCC----CcccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcC
Confidence            455665   3678888888888888887744    33 3334455544434433331       1235799999888777


Q ss_pred             HHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEE
Q 009517          229 SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLA  308 (533)
Q Consensus       229 ~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~  308 (533)
                      ...+...|.+++.++.++  +..+|+++|+++++++   +.++++|++++|+| +|++-+  .+++|+++|+++|.++++
T Consensus       592 Pasa~~~G~~Vv~V~~d~--~G~iDle~L~~~i~~~---~~~taaV~iT~pst-~G~~e~--~I~eI~~iah~~G~~v~V  663 (939)
T TIGR00461       592 PASAAMAGMQVVPVNCDQ--DGNIDLVDLKNKAEQH---GDELAAVMVTYPST-HGVFEP--TIQHACDIVHSFGGQVYL  663 (939)
T ss_pred             HHHHHHCCCEEEEeccCC--CCCcCHHHHHHHHhhc---CCceEEEEEEeCCc-Cceecc--cHHHHHHHHHHcCCEEEE
Confidence            778899999999999874  3489999999999852   34799999999999 787642  399999999999999999


Q ss_pred             ccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCC---CCeeEEEEEecCCHHHHHHHHHh------
Q 009517          309 DEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGEC---GKRGGYMEVTGFSAEVREQIYKV------  379 (533)
Q Consensus       309 De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~---G~riG~v~~~~~~~~~~~~l~~~------  379 (533)
                      |.++..-.. +-   ...    .++   .-|   +++.|.+|+|+++.   |--+|++.+   .+++...+-..      
T Consensus       664 DgAq~~al~-~l---~~P----g~~---GaD---i~~~s~HKtf~~P~G~GGPg~G~i~v---r~~L~~~lPg~~v~~t~  726 (939)
T TIGR00461       664 DGANMNAQV-GL---TSP----GDL---GAD---VCHLNLHKTFCIPHGGGGPGMGPIGV---KSHLIPFLPKHDVVSMI  726 (939)
T ss_pred             EecChhhCC-CC---CCc----ccc---CCC---EEEecCCccCCCCCCCCCCCeEEEEE---hhhchhhcCCCcccccc
Confidence            999854111 10   000    111   234   77889999886232   345788877   44443332100      


Q ss_pred             ------h--hccc--cCCh----HHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecC-
Q 009517          380 ------A--SVNL--CSNI----SGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKA-  444 (533)
Q Consensus       380 ------~--~~~~--~~~~----~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~-  444 (533)
                            +  ...+  +.+.    +...+-..+|.            .+-++++.+....+.+++.+.|++.  +++.-+ 
T Consensus       727 d~~greq~Iga~s~~~~g~a~~~l~a~~yi~~lG------------~~GL~~~a~~ailnAnYl~~rL~~~--~~~l~~~  792 (939)
T TIGR00461       727 TGIGGSKSIGSVSAAPYGSASILPISWMYIKMMG------------NEGLPKASVVAILNANYMATRLKDH--YPILFVG  792 (939)
T ss_pred             cCCCCccccccccccccCcHHHHHHHHHHHHHHC------------HHHHHHHHHHHHHHHHHHHHHhhcc--CcccccC
Confidence                  0  0001  1111    11111111221            1335566666777888999999863  333222 


Q ss_pred             Ccee-EEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHH
Q 009517          445 EGAM-YLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDF  523 (533)
Q Consensus       445 ~gg~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~  523 (533)
                      ..+. +-=+-++.+..  .  +..|. ...+.. +.|.++|+..-. ..|. ..+.-.||.+-..+.++||++++++.++
T Consensus       793 ~~~~~~hEfv~~~~~~--~--~~~g~-~~~dIa-krL~d~G~hapt-~~~p-v~g~lmiepTE~eskeelD~f~~al~~I  864 (939)
T TIGR00461       793 TLKHVAHECILDLRPL--K--AKTGI-EAIDVA-KRLQDYGFHAPT-LSFP-VPGTLMVEPTESESLEELDRFCDAMIAI  864 (939)
T ss_pred             CCCceeEEEEEeccch--h--hhcCC-CHHHHH-HHHHhCCeeccc-cCCc-cCCeEEEEeeccCCHHHHHHHHHHHHHH
Confidence            1222 11011222210  0  01122 234444 455678986433 3343 2332244444457888999999999887


Q ss_pred             HHHHHH
Q 009517          524 HKNFMD  529 (533)
Q Consensus       524 l~~~~~  529 (533)
                      .++..+
T Consensus       865 ~~e~~~  870 (939)
T TIGR00461       865 KEEINA  870 (939)
T ss_pred             HHHHHH
Confidence            776654

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=99.43  E-value=1.3e-10  Score=124.51  Aligned_cols=171  Identities=11%  Similarity=0.060  Sum_probs=118.4

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCC
Q 009517          169 IKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEA  247 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~  247 (533)
                      +.+..+.+|+.++        ++ -.+++||++.++..++.+++ .+||+|+++..+|-+..+.+.+.|+.+++++... 
T Consensus       197 i~eAe~~aA~~fg--------Ad~tyfvvNGTS~~n~av~~a~~-~~Gd~VLvdRN~HKSv~~aLilsga~PVYl~P~~-  266 (713)
T PRK15399        197 HLEAEEYIARTFG--------AEQSYIVTNGTSTSNKIVGMYAA-PAGSTLLIDRNCHKSLAHLLMMSDVVPIWLKPTR-  266 (713)
T ss_pred             HHHHHHHHHHHhC--------CCcEEEEeCChHHHHHHHHHHhc-CCCCEEEeecccHHHHHHHHHHcCCeeEEecccc-
Confidence            3455555555543        33 56889999999999999998 8999999999999999999999999999987554 


Q ss_pred             CCCC----CCH-----HHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEE-EEccccccc-c
Q 009517          248 TGWG----LET-----SEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVL-LADEVYQEN-V  316 (533)
Q Consensus       248 ~~~~----ld~-----~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~l-I~De~y~~~-~  316 (533)
                      +.|+    ++.     +.++++|++.... +++++++|++|+. -|++++   +++|+++|   |+.+ ++||+|... .
T Consensus       267 n~~Gi~g~I~~~~~~~e~I~~~i~~~p~~-~~p~~vvit~pTY-dGi~yd---~~~I~~~~---g~~~ilvDEAhgah~~  338 (713)
T PRK15399        267 NALGILGGIPRREFTRDSIEEKVAATTQA-QWPVHAVITNSTY-DGLLYN---TDWIKQTL---DVPSIHFDSAWVPYTH  338 (713)
T ss_pred             cccCCcCCCChhhccHHHHHHHHHhCCCc-CCceEEEEECCCC-CceeeC---HHHHHHHh---CCCEEEEeccchhhhh
Confidence            3444    345     8899999874211 2346888889854 799998   66677777   5655 699999653 3


Q ss_pred             ccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCee-EEEEE
Q 009517          317 YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRG-GYMEV  365 (533)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~ri-G~v~~  365 (533)
                      |.+.  +.+...+. ...  .+|..+++++|.+|++.   |+.- +++++
T Consensus       339 F~p~--~~~~sam~-~~~--~aD~~i~~tQStHKtL~---alTQaS~iHv  380 (713)
T PRK15399        339 FHPI--YQGKSGMS-GER--VPGKVIFETQSTHKMLA---AFSQASLIHI  380 (713)
T ss_pred             cCcc--cCCcChhh-CCC--CCCeeeeeeeehhcccc---ccchheeeee
Confidence            4321  11111111 100  24555778999999984   5443 44544

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=99.43  E-value=7.7e-11  Score=117.83  Aligned_cols=319  Identities=15%  Similarity=0.184  Sum_probs=193.1

Q ss_pred             cCCCCHHHHHHHHHHHhcCCC--CC---ccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhc
Q 009517          137 QGLFSADSIERAWQILDQIPG--RA---TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI  211 (533)
Q Consensus       137 ~~~~p~~v~~~~~~~~~~~~~--~~---~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~  211 (533)
                      |..+|++|++++.+.+.+..+  .+   ..+..+.  ..++.+.+.+.+.+.++++-+.+=+++..|++.+++.+...++
T Consensus        12 Pa~lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~~--F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ea~~~Nll   89 (364)
T PRK12462         12 PGALPDTVLEQVRQAVVELPETGLSVLGMSHRSSW--FSSLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSMIPMNFS   89 (364)
T ss_pred             CcCCCHHHHHHHHHHHhcccccCccccccccccHH--HHHHHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHHHHHHHcC
Confidence            445599999999988765322  11   1222222  4666677777777777754333334555669999999999998


Q ss_pred             cCCCCeEE--EcCCcCcc-hHHHHHHhCCeEEEEecCCCCCC--CCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccC
Q 009517          212 RSENDGIL--CPIPQYPL-YSASIALHGGTLVPYYLDEATGW--GLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV  286 (533)
Q Consensus       212 ~~~gd~Vl--v~~p~~~~-~~~~~~~~g~~~~~v~~~~~~~~--~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~  286 (533)
                       .+|++++  +.+..|.. +...++.+| .+..+......+|  .++++.++  +.      ++.+.|.+++-...||+.
T Consensus        90 -~~g~~~~~~~~tG~fg~r~~~ea~~~g-~v~~~~~~~~~~~~~~p~~~~~~--~~------~d~~~v~~t~NETstGv~  159 (364)
T PRK12462         90 -RPGAAAPEYVTTGYWSRKAIGEASRVA-AMRVVWDGAASGYRTLPSLAELD--WD------ARAPFRHYVSNETVEGLQ  159 (364)
T ss_pred             -CCCCcEEEEEeCCHHHHHHHHHHHhcC-CceEecCcCCCCCCcCCCHHHhc--cC------CCCcEEEEccCCCCceEe
Confidence             7888654  55666654 445566666 4444432222222  34566541  11      256778888888889998


Q ss_pred             CCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEe
Q 009517          287 LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVT  366 (533)
Q Consensus       287 ~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~  366 (533)
                      .+        ++.+.++.++|+|.+-+-+   + .+ ..+..         -|   ++..+..|++ |+||+-  .+++ 
T Consensus       160 ~~--------~~~~~~~~llvvD~sS~~~---s-~p-id~~~---------~d---vi~agsQKnl-gP~Glt--vviv-  210 (364)
T PRK12462        160 FP--------DAAGLPDSPLIADMSSDFM---S-RP-FDVEA---------YG---MVYAHAQKNL-GPAGVT--VAII-  210 (364)
T ss_pred             cC--------cccccCCCeEEEEcCchhh---C-CC-CChHH---------cc---EEEeeccccC-CCCceE--EEEE-
Confidence            86        2333468999999888742   2 22 12111         13   6677889999 788864  4444 


Q ss_pred             cCCHHHHHHHHHh-----------h--hccccCChHHHHHHHHHcCCCCCCChhHHHHH--H--HHHHHHHHHHHHHHHH
Q 009517          367 GFSAEVREQIYKV-----------A--SVNLCSNISGQILASLVMSPPKVGDESYESYC--A--ERDGILSSLARRAKTL  429 (533)
Q Consensus       367 ~~~~~~~~~l~~~-----------~--~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~l  429 (533)
                        .++.++.....           .  ++..+|+....+++..+|+           |+  +  -++.+.++.+++++.+
T Consensus       211 --s~~al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~-----------~i~~e~GGl~~~~~r~~~ka~~l  277 (364)
T PRK12462        211 --RRALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLR-----------WIRDEIGGVHAMRDINARKAAML  277 (364)
T ss_pred             --CHHHHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHH-----------HHHHhccCHHHHHHHHHHHHHHH
Confidence              77776554321           1  1334566777777777764           22  2  3567788888999999


Q ss_pred             HHHHhcCCCceEec----CCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEE
Q 009517          430 EDAFNSLEGITCNK----AEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCT  505 (533)
Q Consensus       430 ~~~L~~~~g~~~~~----~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis  505 (533)
                      ++.+++.+|+....    .+.-|.+.+++..+.            .+..|+ +.++++|+.-.-|..   .-|  .+|+|
T Consensus       278 y~~id~~~~~~~~~~~~~~RS~mnv~f~~~~~~------------l~~~f~-~~a~~~gl~~lkGhr---~vg--g~Ras  339 (364)
T PRK12462        278 YATLDALNEVIDCHAHRAARSTMNVAFRFRQPR------------LDTLFK-EQSTEAGFCGLSGHR---SIG--GIRAS  339 (364)
T ss_pred             HHHHHhCCCcccCCCChhhcCcceEEEEcCCHH------------HHHHHH-HHHHHCCCccccCCc---ccC--ceEEE
Confidence            99999986544321    234455554433221            134444 556788988776543   222  59999


Q ss_pred             e--cCCcCcHHHHHHHHHHHHHHHHHHh
Q 009517          506 I--LPQEDKIPAIVTRLTDFHKNFMDKF  531 (533)
Q Consensus       506 ~--~~~~e~i~~~~~~l~~~l~~~~~~~  531 (533)
                      +  +.+.|.++    +|.++++++.+++
T Consensus       340 ~yna~~~e~v~----~L~~fm~~f~~~~  363 (364)
T PRK12462        340 LYNAVSEQAVS----RLCAFLKDFAIRH  363 (364)
T ss_pred             cCCCCCHHHHH----HHHHHHHHHHHhc
Confidence            9  47766654    5555555555443

>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.33  E-value=3.9e-11  Score=117.70  Aligned_cols=299  Identities=14%  Similarity=0.118  Sum_probs=187.7

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCC
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEAT  248 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~  248 (533)
                      ..++.+.+|++++       .++-+++..| -......+-.++ .+|.-|+-.+-.+.....-++.-|++++.+..+   
T Consensus       184 hkelE~l~A~f~g-------~e~a~vF~mG-f~TNs~~~p~l~-~~gsLIiSDelNHaSi~~GaRLSgAtiRVfkHN---  251 (519)
T KOG1357|consen  184 HKELEELVARFLG-------VEDAIVFSMG-FATNSMNIPSLL-GKGSLIISDELNHASLITGARLSGATTRVFRHN---  251 (519)
T ss_pred             HHHHHHHHHHhcC-------CcceEEEecc-ccccccCcceee-cCCcceeeccccchheeccccccCceEEEEecC---
Confidence            4556666666654       2455666665 344455566677 788888888888988888899999999888765   


Q ss_pred             CCCCCHHHHHHHHHHHHhcCC-C----e-eEEEE-eCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCC
Q 009517          249 GWGLETSEVKKQLEAAKAKGI-T----V-RALVV-INPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEK  321 (533)
Q Consensus       249 ~~~ld~~~l~~~i~~~~~~g~-~----~-~~iil-~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~  321 (533)
                          |.++||+.|+++-..|. +    - +.+++ ...-..-|.+..   +.+++++++++..+++.||+++..+.+...
T Consensus       252 ----dm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~---Lp~vvalkkkykayl~lDEAHSiGA~g~tG  324 (519)
T KOG1357|consen  252 ----DMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVD---LPEVVALKKKYKAYLYLDEAHSIGAMGATG  324 (519)
T ss_pred             ----CHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecc---cHHHHHhhccccEEEEeeccccccccCCCC
Confidence                68888888887644342 1    1 22333 355556677765   899999999999999999999875542111


Q ss_pred             CcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh----ccccCChHHHHHHHHH
Q 009517          322 KFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS----VNLCSNISGQILASLV  397 (533)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~----~~~~~~~~~q~a~~~~  397 (533)
                            .-+.++.+.++.+..|..++|+|.+ |..|   ||+.+   ++++++.++....    .++.++++.|.....+
T Consensus       325 ------rgvce~~g~d~~dvDImMGtftKSf-ga~G---Gyiag---sk~lid~lrt~s~~~~yat~~sppvaqq~~ssl  391 (519)
T KOG1357|consen  325 ------RGVCEYFGVDPEDVDIMMGTFTKSF-GAAG---GYIAG---SKELIDYLRTPSPSALYATSLSPPVAQQILTSV  391 (519)
T ss_pred             ------cceeeccCCCchhheeecceehhhc-cccc---ceecC---cHHHHhhhccCCCceeecccCChHHHHHHHHHH
Confidence                  1123333334555568899999998 4344   88887   9999988765321    3355666666655443


Q ss_pred             cC-CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCce----eEEecccCCCHHHHHHHHhcCCCCh
Q 009517          398 MS-PPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGA----MYLFPRIQLPEKAIKAAEAEKTVPD  472 (533)
Q Consensus       398 L~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg----~~~~~~~~~~~~~~~~~~~~~~~~~  472 (533)
                      .- .+++       .....++..+++.+++.+++..|... |+-+...+..    +.++    .|.+            -
T Consensus       392 ~~i~G~d-------gt~~g~~k~~~l~~ns~yfr~~l~~~-gfivyG~~dSpVvplll~----~~~k------------~  447 (519)
T KOG1357|consen  392 KHIMGED-------GTNRGRQKIERLAENSRYFRWELQKM-GFIVYGNNDSPVVPLLLY----GPAK------------I  447 (519)
T ss_pred             HhhcCCC-------cccHHHHHHHHHHhhhHHHHHhhhcC-cEEEecCCCCCcceeeec----Cccc------------c
Confidence            21 1111       11223556677888888999999887 7766554433    2222    1111            1


Q ss_pred             HHHHHHHHHccceEEEcCCCCCCCCCCceEEEEe--cCCcCcHHHHHHHHHHHH
Q 009517          473 AFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTI--LPQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       473 ~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~--~~~~e~i~~~~~~l~~~l  524 (533)
                      ..+-+++| +++|.++-+..-..+--...+|++.  .++.|+++.+++.+.++=
T Consensus       448 ~~f~r~~l-~~nigvVvvgfPatpl~e~r~R~c~Sa~ht~e~ld~~l~~i~~~g  500 (519)
T KOG1357|consen  448 VAFSREML-ERNIGVVVVGFPATPLLESRARFCLSASHTKEDLDRALEVIDRVG  500 (519)
T ss_pred             cHHHHHHH-hcCceEEEEeCCCchHHHhHHHhhhcccccHHHHHHHHHHHhhhc
Confidence            23333444 4555554332221111122456666  388899999998887754

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.32  E-value=1.5e-09  Score=110.31  Aligned_cols=279  Identities=14%  Similarity=0.085  Sum_probs=174.3

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCC-----CCCEEEcCChHHHHHHHHHHhcc---
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPAD-----PNDIFLTDGASPAVHMMMQLLIR---  212 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~-----~~~i~~t~G~~~al~~~~~~l~~---  212 (533)
                      +..++..+....-+.   ....|.-.....++.+.+.+++.+.+|.+-.     .-.=++|+|+++++..++.+.+.   
T Consensus        52 ~~~i~~~~l~~~~n~---n~~~~~~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~  128 (373)
T PF00282_consen   52 PASILADLLASALNQ---NGFTWEASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERAL  128 (373)
T ss_dssp             HHHHHHHHHHHHHT----BTTSTTTSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhcc---cccccccccccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHh
Confidence            455555554433332   2334444445788999999999999886621     12458899999999988876641   


Q ss_pred             ----CCC-----C-eEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCC
Q 009517          213 ----SEN-----D-GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP  282 (533)
Q Consensus       213 ----~~g-----d-~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NP  282 (533)
                          ..|     + .|++++-+|.....++..+|..++.||+++  ++.+|+++|+++|.+...+|..+-+|+.+-....
T Consensus       129 ~~~~~~~~~~~~~~~i~~s~~aH~S~~Kaa~~lGlg~~~I~~~~--~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~  206 (373)
T PF00282_consen  129 PRSKAKGVEEIPKPVIYVSEQAHYSIEKAARILGLGVRKIPTDE--DGRMDIEALEKALEKDIANGKTPFAVVATAGTTN  206 (373)
T ss_dssp             HHHHHHTTTHCSSEEEEEETTS-THHHHHHHHTTSEEEEE-BBT--TSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TT
T ss_pred             hhhhhcccccccccccccccccccHHHHhcceeeeEEEEecCCc--chhhhHHHhhhhhcccccccccceeeeccCCCcc
Confidence                011     2 466777788899999999999999999997  5689999999999987666644445666677888


Q ss_pred             CccCCCHHHHHHHHHHHHHcCCEEEEccccccccc-cCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeE
Q 009517          283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY-VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGG  361 (533)
Q Consensus       283 tG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG  361 (533)
                      ||.+=   .+++|+++|+++++|+.+|.+|.+..+ ...  ..   .+...+    +...-| ..+++|.+ + .-+..|
T Consensus       207 ~Ga~D---~l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~--~~---~~~~gi----~~adSi-t~d~HK~l-~-~P~~~~  271 (373)
T PF00282_consen  207 TGAID---PLEEIADICEKYNIWLHVDAAYGGSALLSPE--YR---HLLFGI----ERADSI-TIDPHKWL-G-VPYGCG  271 (373)
T ss_dssp             TSBB----SHHHHHHHHHHCT-EEEEEETTGGGGGGHCT--TG---GGGTTG----GGESEE-EEETTTTT-S--SSS-E
T ss_pred             ccccc---CHHHHhhhccccceeeeeccccccccccccc--cc---cccccc----cccccc-ccchhhhh-c-CCccce
Confidence            99984   499999999999999999999998433 121  11   122222    121223 45789987 4 457888


Q ss_pred             EEEEecCCHHHHHHHHHh-----h-------------hccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHH
Q 009517          362 YMEVTGFSAEVREQIYKV-----A-------------SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLA  423 (533)
Q Consensus       362 ~v~~~~~~~~~~~~l~~~-----~-------------~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~  423 (533)
                      +++.  .++.........     .             ..+...+. ...++..++.       ....-.+.++++.++..
T Consensus       272 ~~l~--r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~tl~~SR-~~~alk~w~~-------l~~~G~~G~~~~i~~~~  341 (373)
T PF00282_consen  272 VLLV--RDKSDLRDAFSINADYLGNDDRESDESYDYGDYTLQGSR-RFRALKLWAT-------LKSLGREGYRERIRRCI  341 (373)
T ss_dssp             EEEE--SSGGGHHGGGEEEETCTT-S-SSS-GGGCEEEGSSSSSG-HHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred             eEEe--ecccchHHHhccChhhhcccccccccccccccccccccc-cchHHHHHHH-------HHhcCHHHHHHHHHHHH
Confidence            8887  354443321100     0             01112233 3333333321       00012244566777778


Q ss_pred             HHHHHHHHHHhcCCCceEec-CCceeE
Q 009517          424 RRAKTLEDAFNSLEGITCNK-AEGAMY  449 (533)
Q Consensus       424 ~~~~~l~~~L~~~~g~~~~~-~~gg~~  449 (533)
                      +..+++.+.|++.+++.++. |.-+..
T Consensus       342 ~~a~~l~~~l~~~~~~el~~~~~~~~v  368 (373)
T PF00282_consen  342 ELARYLADRLRKDPRFELVNEPDLNIV  368 (373)
T ss_dssp             HHHHHHHHHHHTSTTEEESSTTSSSEE
T ss_pred             HHHHHHHHHHHhCCCEEEEcCCCceEE
Confidence            88889999999988888764 444443

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=99.31  E-value=3e-09  Score=107.03  Aligned_cols=327  Identities=17%  Similarity=0.165  Sum_probs=194.8

Q ss_pred             cccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCC-------cCcc-hHHHH
Q 009517          161 GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIP-------QYPL-YSASI  232 (533)
Q Consensus       161 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p-------~~~~-~~~~~  232 (533)
                      ..|........|.+.++++++        .+.++.|..+..+-.++++.++..+|+++++..+       .+.. ....+
T Consensus        68 D~Y~gdpSv~~Lee~vael~G--------~E~alpthqGRgaE~Il~~~~~~~~g~e~g~~~~~~~v~hn~~fett~g~a  139 (467)
T TIGR02617        68 EAYSGSRSYYALAESVKNIFG--------YQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHS  139 (467)
T ss_pred             cccccCchHHHHHHHHHHHhC--------CceEEECCCCchHHHHHHHhhcccccccccccccccccceEEEEecchHHH
Confidence            458777668999999999975        4568889888888888989888337887775443       2222 23456


Q ss_pred             HHhCCeEEEEecCC--------CCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCC-CCccCCCHHHHHHHHHHHHHcC
Q 009517          233 ALHGGTLVPYYLDE--------ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGN-PTGQVLAEENQRAIVDFCKKEG  303 (533)
Q Consensus       233 ~~~g~~~~~v~~~~--------~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~N-PtG~~~s~~~l~~i~~l~~~~~  303 (533)
                      ...|+.++.++.++        .....+|++.|+++|++...  .+...+.+.--+| -.|.++|.+.++++.++|++||
T Consensus       140 ~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~--~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~G  217 (467)
T TIGR02617       140 QINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGP--NNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYD  217 (467)
T ss_pred             HHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCC--CCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcC
Confidence            77888888764331        11236899999999987411  1233332222233 3588999999999999999999


Q ss_pred             CEEEEcccccc--ccc----cCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCH---HHHH
Q 009517          304 LVLLADEVYQE--NVY----VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSA---EVRE  374 (533)
Q Consensus       304 ~~lI~De~y~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~---~~~~  374 (533)
                      +.++.|.+--.  -+|    .......++..++.++.. .-|   .+..|+||.+    |.++|-+++.. ++   ++.+
T Consensus       218 IplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~-~aD---svt~slsKgl----gApvGg~Lag~-d~~~~~l~~  288 (467)
T TIGR02617       218 IPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYK-YAD---MLAMSAKKDA----MVPMGGLLCFK-DDSFFDVYT  288 (467)
T ss_pred             CcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhc-cCC---EEEEEcCCCC----CCcccceEEec-chhHHHHHH
Confidence            99999975311  111    001123456666655532 234   4467999976    67877776643 45   4444


Q ss_pred             HHHHhh----h-ccc-cCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCcee
Q 009517          375 QIYKVA----S-VNL-CSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAM  448 (533)
Q Consensus       375 ~l~~~~----~-~~~-~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~  448 (533)
                      +++...    . .++ +.+.--..+++.-|.+..     -       ....+.=....++|.+.|.+. |+.++. .||.
T Consensus       289 ~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~~-----~-------~~yl~~ri~qv~yl~~~L~~~-Gvpi~~-~Ggh  354 (467)
T TIGR02617       289 ECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGM-----N-------LDWLAYRINQVQYLVNGLEEI-GVVCQQ-AGGH  354 (467)
T ss_pred             HHHhhcccccCCcCcCchhHHHHHHHHhhhhhcc-----c-------HHHHHHHHHHHHHHHHHHHhC-CCcEEe-cCcc
Confidence            444322    1 122 223333333333343211     0       111111123356888899887 998888 8888


Q ss_pred             EEecccC--CCHHHHHHHHhcCCCChHHHHHHHHHccceEEEc-CCC-CCCC--CC------CceEEEEec---CCcCcH
Q 009517          449 YLFPRIQ--LPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVP-GSG-FGQV--PG------TWHFRCTIL---PQEDKI  513 (533)
Q Consensus       449 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~p-g~~-f~~~--~g------~~~iRis~~---~~~e~i  513 (533)
                      -++++..  +|.--     .... ....++.++-.+.||--.- |+. ++..  .+      -..+|+++.   -|.+.+
T Consensus       355 av~iDa~~~lphip-----~~~f-pa~al~~~ly~~~GiR~~e~G~~~~~rd~~~~~~~~~~~el~RlaipRrvyt~~h~  428 (467)
T TIGR02617       355 AAFVDAGKLLPHIP-----ADQF-PAHALACELYKVAGIRAVEIGSLLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHM  428 (467)
T ss_pred             EEEEehhhhCCCCC-----hhhC-cHHHHHHHHHHHcCcceEeecceecccCCCCCccCCCccceeeeccccccccHhHH
Confidence            8876532  11100     0011 2333455666778875332 332 1111  11      137999993   678889


Q ss_pred             HHHHHHHHHHHHH
Q 009517          514 PAIVTRLTDFHKN  526 (533)
Q Consensus       514 ~~~~~~l~~~l~~  526 (533)
                      +..++++..+.++
T Consensus       429 d~v~~~~~~~~~~  441 (467)
T TIGR02617       429 DFIIEAFKHVKEN  441 (467)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999887764

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.27  E-value=2.3e-09  Score=119.50  Aligned_cols=304  Identities=13%  Similarity=0.079  Sum_probs=182.4

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCC--cc----cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCC
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHS--QG----IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSE  214 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~--~G----~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~  214 (533)
                      |..+.+++.+...-..  ..+.|.+.  +|    +.++++.++++++      .+++++-++.+++.+.+.++.++...+
T Consensus       118 P~~v~~~i~~~~~~~T--aytPYqaEisQG~lqal~~~Qt~ia~LtG------~~~anaSL~d~aTAaaea~~~a~~~~~  189 (993)
T PLN02414        118 PPVILRNILENPGWYT--QYTPYQAEIAQGRLESLLNYQTMITDLTG------LPMSNASLLDEGTAAAEAMAMCNNILK  189 (993)
T ss_pred             CHHHHHHHHhChHHHh--hcCCCchHHHHHHHHHHHHHHHHHHHHhC------CChhhEeecCChHHHHHHHHHHHhccc
Confidence            6666677776554321  24455553  45    4456666666664      778999999999999998887764344


Q ss_pred             C--CeEEEcCCcCcchHHHHH----HhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCC
Q 009517          215 N--DGILCPIPQYPLYSASIA----LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLA  288 (533)
Q Consensus       215 g--d~Vlv~~p~~~~~~~~~~----~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s  288 (533)
                      |  ++|++++-.|+.+...++    ..|++++.++.+..     +      ...+      .+.++++.+|+ -+|.+.+
T Consensus       190 g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~~~~-----~------~~~~------~v~~vlvq~P~-~~G~v~d  251 (993)
T PLN02414        190 GKKKKFLIASNCHPQTIDVCQTRADGLGLEVVVADEKDF-----D------YSSG------DVCGVLVQYPA-TDGEVLD  251 (993)
T ss_pred             CCCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEecchhh-----c------cccC------ceEEEEEecCC-CCeEEcC
Confidence            4  789999999998776554    35889988886421     1      0111      34455544554 4899987


Q ss_pred             HHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCC---CCCeeEEEEE
Q 009517          289 EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGE---CGKRGGYMEV  365 (533)
Q Consensus       289 ~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl---~G~riG~v~~  365 (533)
                         +++|+++|+++|+++++ .+..- ...+   ..+.    .++   ..|   |++++-.|.. +.   .|-+.|++.+
T Consensus       252 ---v~~I~~~ah~~GaL~iV-aad~l-al~~---l~~p----ge~---GAD---i~vgsgqKwg-~P~G~GGP~aGflav  312 (993)
T PLN02414        252 ---YAEFVKNAHANGVKVVM-ATDLL-ALTM---LKPP----GEW---GAD---IVVGSAQRFG-VPMGYGGPHAAFLAT  312 (993)
T ss_pred             ---HHHHHHHHHHcCCEEEE-EECHH-HhcC---CCCH----hhc---cCc---EEEECCCccc-cCCCCCCCCeeEEEE
Confidence               99999999999999999 33221 1111   1111    122   244   7788888864 22   2445899988


Q ss_pred             ecCCHHHHHHHH-Hhhh------------------------ccccCChHHHHHHHHHcCCCCCCChhHHHH--HHHHHHH
Q 009517          366 TGFSAEVREQIY-KVAS------------------------VNLCSNISGQILASLVMSPPKVGDESYESY--CAERDGI  418 (533)
Q Consensus       366 ~~~~~~~~~~l~-~~~~------------------------~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~--~~~~~~~  418 (533)
                         .+++...+- ++-.                        ...+.|..+..++.+.+.      ..|..+  ..-++++
T Consensus       313 ---r~~~~r~~PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la------~~y~~~~g~~Gl~~I  383 (993)
T PLN02414        313 ---SQEYKRLMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMA------AMYAVYHGPEGLKTI  383 (993)
T ss_pred             ---CHHHHhhCCCcccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHH------HHHHHHhccccHHHH
Confidence               666655432 1100                        011223322222222221      011111  0225667


Q ss_pred             HHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCC
Q 009517          419 LSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPG  498 (533)
Q Consensus       419 ~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g  498 (533)
                      .++..++..++.+.|.+. |+++..+  .+|-.+.+..+             +... +.+.|.++||.+..-       .
T Consensus       384 a~ri~~la~~l~~~L~~~-G~~~~~~--~~f~~vt~~~~-------------~~~~-v~~~L~~~gI~l~~~-------~  439 (993)
T PLN02414        384 AQRVHGLAGVFAAGLKKL-GFQVQSL--PFFDTVKVKCS-------------DADA-IADAAAKVGINLRVV-------D  439 (993)
T ss_pred             HHHHHHHHHHHHHHHhhc-CCccCCC--CCcCeEEEecC-------------CHHH-HHHHHHHCCCeeEEe-------c
Confidence            778888888999999876 7776543  22222212322             1233 335567789977631       1


Q ss_pred             CceEEEEec--CCcCcHHHHHHHHHH
Q 009517          499 TWHFRCTIL--PQEDKIPAIVTRLTD  522 (533)
Q Consensus       499 ~~~iRis~~--~~~e~i~~~~~~l~~  522 (533)
                      .+.+|+|+.  .++++|+.+++.|..
T Consensus       440 ~~~lrvs~~e~~T~edId~L~~~l~~  465 (993)
T PLN02414        440 ANTVTVSFDETTTLEDVDKLFKVFAG  465 (993)
T ss_pred             CCeEEEEeeccCCHHHHHHHHHHHcc
Confidence            227999996  888999999999963

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=99.26  E-value=2e-09  Score=111.05  Aligned_cols=166  Identities=20%  Similarity=0.212  Sum_probs=124.7

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCC
Q 009517          169 IKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEA  247 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~  247 (533)
                      ..+..+.+|+.++        ++ ..+++||++.++..++.+++ .+||+|+++.+++-+....+.+.|+.++++.....
T Consensus        72 i~eAqe~aA~~fg--------Ad~tyFvvNGTS~ank~vi~a~~-~~GD~VLvdRN~HKSi~~glilaGa~Pvyl~p~~n  142 (557)
T COG1982          72 IKEAQELAARVFG--------ADHTYFVVNGTSTANKAVINAVL-TPGDKVLVDRNCHKSIHHGLILAGATPVYLEPSRN  142 (557)
T ss_pred             HHHHHHHHHHHhC--------CCceEEEECCccHHHHHHHHhhc-CCCCEEEecCCccHHHHHHHHHcCCceEEecCCCC
Confidence            4566666666653        33 57889999999999999999 89999999999999999999999999998877665


Q ss_pred             CCCC----CCHHHHHHHHHHHHhcCCCe-eEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccc-cccCCC
Q 009517          248 TGWG----LETSEVKKQLEAAKAKGITV-RALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN-VYVPEK  321 (533)
Q Consensus       248 ~~~~----ld~~~l~~~i~~~~~~g~~~-~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~-~~~~~~  321 (533)
                      ..|+    ++.+.+++++.++.    .. |++++++|.. -|+++.   +++|++++...++|+..||+.... .+.+. 
T Consensus       143 p~~gi~ggI~~~~~~~~l~~~~----~~~k~~vitnpTY-dGv~~n---~~~i~~~~~~~~a~v~~deah~~~~~~~~~-  213 (557)
T COG1982         143 PLYGIIGGIPLETFKEALLAHP----DAEKLAVITNPTY-DGVCYN---LRKIVELLHHYGAWVLYDEAHPAHFDFSPM-  213 (557)
T ss_pred             ccccccCCCCHHHHHHHHHhCh----hhheeEEEecCcc-ceEeec---HHHHHHHHhhcCceEEhhhcCccccccccc-
Confidence            5444    69999999887742    44 7888888875 699998   888899999999999999998542 12221 


Q ss_pred             CcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeE-EEEE
Q 009517          322 KFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGG-YMEV  365 (533)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG-~v~~  365 (533)
                       ...   ..      ..+..+++.+|..|.++   ++.-+ ++..
T Consensus       214 -l~~---~~------~~~~~~~~tqS~HK~l~---alSQaS~iHv  245 (557)
T COG1982         214 -LPE---SA------LNGGADFVTQSTHKLLA---ALSQASMIHV  245 (557)
T ss_pred             -Ccc---hh------hhcCceEEEechhhhhh---hhhhhHHHhh
Confidence             111   11      12345789999999873   55543 4443

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.19  E-value=1e-08  Score=114.83  Aligned_cols=282  Identities=17%  Similarity=0.164  Sum_probs=171.0

Q ss_pred             CcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCC--CeEEEcCCcCcchHHHH----HHhCCeE
Q 009517          166 SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN--DGILCPIPQYPLYSASI----ALHGGTL  239 (533)
Q Consensus       166 ~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g--d~Vlv~~p~~~~~~~~~----~~~g~~~  239 (533)
                      .+|..+..-.+...+.+..|  .+..++-+..+++++.+.++.++...++  ++|++++-.|+.....+    +..|.++
T Consensus       116 sQG~Leal~~~Qt~la~LtG--~~~anaSl~d~aTAa~ea~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev  193 (954)
T PRK05367        116 SQGRLEALLNFQTMVADLTG--LEIANASLLDEATAAAEAMALAKRVSKSKSNRFFVDDDVHPQTLDVLRTRAEPLGIEV  193 (954)
T ss_pred             HHHHHHHHHHHHHHHHHHHC--CChhhccccccHHHHHHHHHHhhhhccCCCCEEEEcCccCHHHHHHHHHHHHhCCCEE
Confidence            44544433333333333334  6788999999999999988877643443  89999999999877554    5579999


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccC
Q 009517          240 VPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVP  319 (533)
Q Consensus       240 ~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~  319 (533)
                      +.++.+.+    ++        .+      ++.++++.+| |-+|.+.+   +++|+++|+++|+++++|.....+.. .
T Consensus       194 ~~~~~~~d----~~--------~~------~~~~vlvq~p-~~~G~i~d---~~~i~~~ah~~Gal~~vda~~~Al~~-l  250 (954)
T PRK05367        194 VVGDAAKA----LD--------HD------DVFGVLLQYP-GTSGEVRD---YTALIAAAHARGALVAVAADLLALTL-L  250 (954)
T ss_pred             EEecCccC----CC--------cc------cEEEEEEecC-CCCeeecc---HHHHHHHHHHcCCEEEEEehhhhccC-C
Confidence            99987531    11        11      4666666676 56999987   99999999999999999864422211 1


Q ss_pred             CCCcccHHHHHhhcCCCCCCceEEEEecCCcc-----CCCCCCCeeEEEEEecCCHHHHHHHHHh-hh------------
Q 009517          320 EKKFHSFKKVSRSMGYGEKDISLVSFQSVSKG-----YYGECGKRGGYMEVTGFSAEVREQIYKV-AS------------  381 (533)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~-----~~gl~G~riG~v~~~~~~~~~~~~l~~~-~~------------  381 (533)
                      .    +.    .++   ..|   |++++..|.     + |  |--.|++.+   .+++...+... ..            
T Consensus       251 ~----~p----ge~---GaD---i~vgs~qkfg~P~g~-G--GP~aGflav---r~~~~r~lpgrivG~s~d~~g~~~~~  310 (954)
T PRK05367        251 T----PP----GEM---GAD---IAVGSAQRFGVPMGF-G--GPHAAYFAV---RDAYKRSMPGRIVGVSVDAAGNPALR  310 (954)
T ss_pred             C----Ch----hhc---CCC---EEEeeCcccCCCCCC-C--CCCEEEEEE---CHHHHhhCCCCeeeeecccCCCcccc
Confidence            1    11    222   245   778888886     4 2  334889888   67766555211 00            


Q ss_pred             ------------ccccCChHHHHHHHHHcCCCCCCChhHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCce
Q 009517          382 ------------VNLCSNISGQILASLVMSPPKVGDESYESY--CAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGA  447 (533)
Q Consensus       382 ------------~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg  447 (533)
                                  ...++|.....++.+++.      ..|..+  ..-++++.++...+..++.+.|++. |+++..+  .
T Consensus       311 lalqtReqhiRrekaTsNict~qaL~a~~a------~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~~-G~~~~~~--~  381 (954)
T PRK05367        311 LALQTREQHIRREKATSNICTAQVLLAVMA------SMYAVYHGPEGLKAIARRVHRLAAILAAGLRAL-GLEVVHD--S  381 (954)
T ss_pred             cccccccccccccccccccchHHHHHHHHH------HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc-CcccCCC--C
Confidence                        001112211111111110      011111  1236777788888889999999875 8775433  2


Q ss_pred             eEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHH
Q 009517          448 MYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLT  521 (533)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~  521 (533)
                      +|-.+.+..+.            +.... .+.|.++||.+..       ...+.+|||+.  .++++|+.+++.|.
T Consensus       382 ~f~~~~~~~~~------------~~~~i-~~~l~~~gi~~~~-------~~~~~l~is~~e~~t~~did~l~~~l~  437 (954)
T PRK05367        382 FFDTLTVEVGG------------DAAAV-LARALAAGINLRR-------VDDDHVGISLDETTTREDLAALLAVFG  437 (954)
T ss_pred             CCCeEEEeCCC------------CHHHH-HHHHHHCCceecc-------ccCCEEEEEecccCCHHHHHHHHHHHc
Confidence            22222222221            12333 3556678998842       11227999996  78889999999996

>PLN02994 1-aminocyclopropane-1-carboxylate synthase

Probab=99.17  E-value=7.7e-11  Score=103.36  Aligned_cols=65  Identities=26%  Similarity=0.461  Sum_probs=61.0

Q ss_pred             ccCCCcccHHHHHHHHHHHHhhcC--CCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcc
Q 009517          162 AYSHSQGIKGLRDTIAAGIEARDG--FPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPL  227 (533)
Q Consensus       162 ~Y~~~~G~~~lr~aia~~~~~~~g--~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~  227 (533)
                      .|++..|.++||+++|+|+.+++|  +.+++++|++|+|+++++..++.+++ ++||.|++++|+|++
T Consensus        87 ~Y~~~~G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~-dpGD~VlVp~P~Y~~  153 (153)
T PLN02994         87 LFQDYHGLANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIA-DPGDAFLVPTPYYAA  153 (153)
T ss_pred             cCCCCCCcHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHc-CCCCEEEEeCCCCCC
Confidence            489999999999999999999988  67889999999999999999999999 899999999999974

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=99.15  E-value=7.2e-08  Score=93.45  Aligned_cols=175  Identities=19%  Similarity=0.239  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHhhcCCCCCCCCEEE---cCChHHHHHHHHHHhccCCCCeEEEcC-CcCcchHHHH----------HHhCC
Q 009517          172 LRDTIAAGIEARDGFPADPNDIFL---TDGASPAVHMMMQLLIRSENDGILCPI-PQYPLYSASI----------ALHGG  237 (533)
Q Consensus       172 lr~aia~~~~~~~g~~~~~~~i~~---t~G~~~al~~~~~~l~~~~gd~Vlv~~-p~~~~~~~~~----------~~~g~  237 (533)
                      =|+.+-+.+.+.+|    .|.-++   .-++|+|+..++..++ .|||+++... .-|-.....+          +..|.
T Consensus        55 GRd~le~iyA~vfg----aE~ALVRpq~vSGTHAi~~~Lfg~L-rpGD~ll~~tG~PYDTL~~VIG~~g~~~GSL~e~Gi  129 (403)
T PF06838_consen   55 GRDKLERIYADVFG----AEDALVRPQFVSGTHAIALALFGVL-RPGDELLSITGKPYDTLEEVIGIRGNGPGSLKEFGI  129 (403)
T ss_dssp             HHHHHHHHHHHHCT-----SEEEEETTS-SHHHHHHHHHHHH---TT-EEEESSSS--CCHHHHHTSSSSSSSSTGGGT-
T ss_pred             cHHHHHHHHHHHhC----chhhhhcccccchHHHHHHHHHhcC-CCCCeEEEcCCCchhhHHHHhCCCCCCCCChHHhCc
Confidence            35555555555545    343333   2368899999999999 8999988644 3344444443          55778


Q ss_pred             eEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEe-CCCCCCccCCCHHHHHHHHHHHHHc--CCEEEEcccccc
Q 009517          238 TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLAEENQRAIVDFCKKE--GLVLLADEVYQE  314 (533)
Q Consensus       238 ~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~-~p~NPtG~~~s~~~l~~i~~l~~~~--~~~lI~De~y~~  314 (533)
                      +...+++.+++  .+|.+.+++++++      ++|+|++. +-..-+=-.++.++++++++++++.  ++++++|.+|.+
T Consensus       130 ~Y~~v~L~~dg--~~D~~~i~~~~~~------~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGE  201 (403)
T PF06838_consen  130 KYREVPLTEDG--TIDWEAIKKALKP------NTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGE  201 (403)
T ss_dssp             EEEE--B-TTS--SB-HHHHHHHHHT------TEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTT
T ss_pred             eeEEEeecCCC--CcCHHHHHHhhcc------CceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcce
Confidence            89999998754  7899999999997      89999998 6666666679999999999999975  799999999999


Q ss_pred             ccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCC--eeEEEEEecCCHHHHHHHHHh
Q 009517          315 NVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGK--RGGYMEVTGFSAEVREQIYKV  379 (533)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~--riG~v~~~~~~~~~~~~l~~~  379 (533)
                      |.-.-+ |        .++   ..|   ++++|+=|+.+  .|+  -.||+++   .+++++.....
T Consensus       202 FvE~~E-P--------~~v---GAD---l~aGSLIKNpG--GgiAptGGYIaG---r~~lVe~~a~R  248 (403)
T PF06838_consen  202 FVETQE-P--------TEV---GAD---LMAGSLIKNPG--GGIAPTGGYIAG---RKDLVERAAYR  248 (403)
T ss_dssp             TTSSS--G--------GGG---T-S---EEEEETTSGGG--TTT-SS-EEEEE---SHHHHHHHHHH
T ss_pred             eccccC-c--------ccc---chh---heeccceeCCC--CCccCcCCEEec---hHHHHHHHHhh
Confidence            664322 1        122   345   88999999984  353  4799998   99999887643

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]

Probab=99.05  E-value=2.4e-07  Score=88.97  Aligned_cols=328  Identities=19%  Similarity=0.231  Sum_probs=202.2

Q ss_pred             ccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc----CCCCeEEEcCCcCcchH-HHHHH
Q 009517          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR----SENDGILCPIPQYPLYS-ASIAL  234 (533)
Q Consensus       160 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~----~~gd~Vlv~~p~~~~~~-~~~~~  234 (533)
                      ...|.-+.++..|.+++.+.++        .+.++.|.-+..|-.+++..+++    .||.+..+++..|.... .-.+.
T Consensus        72 DEAYagsrs~~~L~~avkdifG--------fq~~iPthQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTTr~h~~~  143 (471)
T COG3033          72 DEAYAGSRSYYALADAVKDIFG--------FQYTIPTHQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTTRGHIQI  143 (471)
T ss_pred             chhhcccccHHHHHHHHHHhcC--------ceeeeeccCCccHHHHHHHHHhhhccccCCccccccccceecchhHHHHh
Confidence            4568888889999999988864        36678888777776766666652    25555666666666543 34566


Q ss_pred             hCCeEEEEecCCCCCC--------CCCHHHHHHHHHHHHhcCCCeeEEEEe-CCCCCCccCCCHHHHHHHHHHHHHcCCE
Q 009517          235 HGGTLVPYYLDEATGW--------GLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLAEENQRAIVDFCKKEGLV  305 (533)
Q Consensus       235 ~g~~~~~v~~~~~~~~--------~ld~~~l~~~i~~~~~~g~~~~~iil~-~p~NPtG~~~s~~~l~~i~~l~~~~~~~  305 (533)
                      .|..++.++.++..+.        .+|++.|++.|.+....  ++..|++. ..|.-.|...|.+.++++.++|++|++.
T Consensus       144 ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~--nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ip  221 (471)
T COG3033         144 NGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGAD--NVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIP  221 (471)
T ss_pred             cCCccccccccccccccccCCCCCccCHHHHHHHHHHhCcc--cCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCc
Confidence            7888888887764322        36999999999986322  45566666 4455778999999999999999999999


Q ss_pred             EEEccc-cccccc-----cCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCee-EEEEEecCCH---HHHHH
Q 009517          306 LLADEV-YQENVY-----VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRG-GYMEVTGFSA---EVREQ  375 (533)
Q Consensus       306 lI~De~-y~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~ri-G~v~~~~~~~---~~~~~  375 (533)
                      ++.|.+ +.+-.|     ..+-..+++..+..++.. +.|.   +..|.-|-  ||.  .+ |++..  .++   ++-.+
T Consensus       222 vv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~s-YaD~---~~mS~KKD--~lv--nmGGfl~~--~D~~~fDvy~~  291 (471)
T COG3033         222 VVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYS-YADG---CTMSAKKD--GLV--NMGGFLCF--KDDSFFDVYEE  291 (471)
T ss_pred             EEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHh-hhhh---heeecccc--cee--ccccEEEe--cCccHHHHHHH
Confidence            999976 233222     223356788888777643 3442   24455553  332  33 44444  233   25555


Q ss_pred             HHHhh----h--ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeE
Q 009517          376 IYKVA----S--VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMY  449 (533)
Q Consensus       376 l~~~~----~--~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~  449 (533)
                      ++...    .  ++.+...=...+.+.-|.+.     .-..|+.+   .    .++.++|.+.|++. |+.++.|.||.-
T Consensus       292 ~~~~~V~~eG~~tYGgl~GrdmealAvGL~e~-----~~~~yl~~---R----v~Qv~YL~~~l~~~-GVpi~~paGGHa  358 (471)
T COG3033         292 CRTLVVVQEGFPTYGGLAGRDMEALAVGLREG-----VNFDYLAH---R----VAQVQYLADGLEEA-GVPIVQPAGGHA  358 (471)
T ss_pred             HHhheEeeccccccCcccchhHHHHHHHHHHh-----cCcHHHHH---H----HHHHHHHHHHHHhc-CCeeEecCCCce
Confidence            54432    1  11111222222233333211     11112221   1    23346899999998 999999999998


Q ss_pred             EecccC--CCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCC--CCC--CCC------ceEEEEec---CCcCcHH
Q 009517          450 LFPRIQ--LPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGF--GQV--PGT------WHFRCTIL---PQEDKIP  514 (533)
Q Consensus       450 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f--~~~--~g~------~~iRis~~---~~~e~i~  514 (533)
                      +|++..  +|.--.+      .-....++.++.++.||-.+--..|  +.+  .+.      ..+|+++.   -+.+.++
T Consensus       359 vfvda~~~lphip~e------qFpaqala~ely~e~GiRavElG~~~~~rd~ktg~q~~~~~elvRltipRrtYt~~HmD  432 (471)
T COG3033         359 VFVDAGKFLPHIPAE------QFPAQALACELYKEAGIRAVELGSFSLGRDPKTGKQHPPPAELVRLTIPRRTYTQTHMD  432 (471)
T ss_pred             EEeehhhhcCCCChh------hCcHHHHHHHHHHHhCeeeeeeeceecccCCCccccCCCchheeeEeccccccchhHHH
Confidence            887643  2210000      1134455667888899987654434  211  111      36999993   5677888


Q ss_pred             HHHHHHHHHHHH
Q 009517          515 AIVTRLTDFHKN  526 (533)
Q Consensus       515 ~~~~~l~~~l~~  526 (533)
                      ..++.++++.+.
T Consensus       433 ~V~~a~~~l~e~  444 (471)
T COG3033         433 FVIEAFKALKEN  444 (471)
T ss_pred             HHHHHHHHHHhc
Confidence            888888877653

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=99.02  E-value=7e-07  Score=95.35  Aligned_cols=168  Identities=15%  Similarity=0.153  Sum_probs=122.5

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC---C---
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS---E---  214 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~---~---  214 (533)
                      ++.++..+...+-+.   ....|-...+...+.+.+.+++.+.+|.+  ...=.+|+||++|...++..++..   |   
T Consensus        96 ~paila~~~a~~~N~---n~~~~e~SP~~t~lE~~vi~~la~l~G~~--~~~G~~TsGGT~ANl~aL~~AR~~k~~p~a~  170 (608)
T TIGR03811        96 MPAILAYNYAMLWNG---NNVAYESSPATSQMEEEVGKEFATLMGYK--NGWGHIVADGSLANLEGLWYARNIKSLPFAM  170 (608)
T ss_pred             HHHHHHHHHHHHhCC---CCCccccCchHHHHHHHHHHHHHHHhCCC--CCCeEEeCChHHHHHHHHHHHHHhhhccchh
Confidence            455555554444432   23344444557889999999999998854  333457899999988877765410   0   


Q ss_pred             ---------------------------------------------C------CeEEEcCCcCcchHHHHHHhCC---eEE
Q 009517          215 ---------------------------------------------N------DGILCPIPQYPLYSASIALHGG---TLV  240 (533)
Q Consensus       215 ---------------------------------------------g------d~Vlv~~p~~~~~~~~~~~~g~---~~~  240 (533)
                                                                   |      -+|+++.-.|..+..++...|.   .++
T Consensus       171 ~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~ilGlG~~~vv  250 (608)
T TIGR03811       171 KEVKPELVAGKSDWELLNMPTKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADIIGIGLDQVI  250 (608)
T ss_pred             hhccccccccccchhhcccccccccccccccccchhhhhhhccccccccccceEEEECCCccHHHHHHHHHcCCCcccEE
Confidence                                                         0      0577888889999999999998   588


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCC--EEEEccccccc
Q 009517          241 PYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGL--VLLADEVYQEN  315 (533)
Q Consensus       241 ~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~--~lI~De~y~~~  315 (533)
                      .||+++  ++.+|++.|++.|++....|.++-+|+-+-....+|.+=+.+++.+|++.++++|+  ++.+|.+|.++
T Consensus       251 ~VpvD~--~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~  325 (608)
T TIGR03811       251 PVPVDS--NYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGY  325 (608)
T ss_pred             EeecCC--CCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccch
Confidence            999875  56999999999999876677667677777888899999774444444444478898  69999999985

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=5.6e-08  Score=94.21  Aligned_cols=337  Identities=12%  Similarity=0.061  Sum_probs=194.1

Q ss_pred             CHHHHHHHHHHHhcCCC---CCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCe
Q 009517          141 SADSIERAWQILDQIPG---RATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDG  217 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~---~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~  217 (533)
                      .+++.+.+...+.+..-   .....|+...-...|.+.||++++       ..+.|+...|- .++..++.+++ +.||.
T Consensus       110 ~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~iakF~G-------~E~aivYs~gF-~ti~S~ipafs-KrGDI  180 (467)
T KOG1358|consen  110 NEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRIAKFMG-------TEDAIVYSYGF-STIESAIPAFS-KRGDI  180 (467)
T ss_pred             cHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHHHHHHhhC-------Ccceeeecccc-chhhhcchhhh-ccCcE
Confidence            57888888888776521   134568877767789999999985       24556666654 56777788888 78999


Q ss_pred             EEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHH----hcC--CCee-EEEEeCCCCCCccCCCHH
Q 009517          218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAK----AKG--ITVR-ALVVINPGNPTGQVLAEE  290 (533)
Q Consensus       218 Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~----~~g--~~~~-~iil~~p~NPtG~~~s~~  290 (533)
                      |.+..-........+++..-++..+.-       -|.++++..+.+..    +..  +.++ .|++.----+||.+.+  
T Consensus       181 i~~de~~nfaIq~GlqlSRS~i~~Fkh-------ndm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~p--  251 (467)
T KOG1358|consen  181 IFVDEAVNFAIQKGLQLSRSTISYFKH-------NDMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICP--  251 (467)
T ss_pred             EEEehhhhHHHHHHHhhhhheeEEecC-------CCHHHHHHhccCcchhhhhccccccceEEEEEEeeccCCCcccc--
Confidence            988887777777777776666666543       26677766553321    000  1223 4454555556999998  


Q ss_pred             HHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCH
Q 009517          291 NQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSA  370 (533)
Q Consensus       291 ~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~  370 (533)
                       +.+|+++..+|...+|.||.|+-...+....      ...+..+...+...+++.|+.-++++ .   .|+.++    .
T Consensus       252 -l~~iv~lk~Kyk~RvildEs~SfG~lg~~Gr------GvteH~~v~~~~iDiv~~sm~~alas-~---GgFc~G----~  316 (467)
T KOG1358|consen  252 -LPEIVKLKNKYKFRVILDESLSFGVLGKTGR------GVTEHFGVPITDIDIVTASMETALAS-G---GGFCAG----K  316 (467)
T ss_pred             -cHHHHHHHhhheEEEEEecccccccccccCc------cccccCCCCccceeeeeecccccccc-c---Cceeec----c
Confidence             9999999999999999999998644422111      11222222223345778888877732 2   245443    2


Q ss_pred             HHHHHHHHhhhcc----ccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCc
Q 009517          371 EVREQIYKVASVN----LCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEG  446 (533)
Q Consensus       371 ~~~~~l~~~~~~~----~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~g  446 (533)
                      .++-..+++.+..    -+.++....++..++.           ..++-..+.+.++.....+.+.|....++.+....-
T Consensus       317 ~~i~~hQrLSg~~Y~fSAslPp~la~aa~~ai~-----------i~~~~p~~~~~L~~k~~~~H~~l~~~s~~~v~~~~~  385 (467)
T KOG1358|consen  317 SFIADHQRLSGSGYCFSASLPPYLAGAAIKAIL-----------IEEWNPEIVQPLRAKVAKFHAALSSNSGFIVSGSPE  385 (467)
T ss_pred             eeeEeeeeccccceeeeccCchhhhhhHHHHHH-----------HHhhCcchhhhhhccccccchhhhcCCceEEecCcC
Confidence            3333333433322    2234444444444442           222233455556666666777776654555544322


Q ss_pred             eeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCC---CCCCCCceEEEEec--CCcCcHHHHHHHHH
Q 009517          447 AMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGF---GQVPGTWHFRCTIL--PQEDKIPAIVTRLT  521 (533)
Q Consensus       447 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f---~~~~g~~~iRis~~--~~~e~i~~~~~~l~  521 (533)
                      .-...+.+..+.+-.++-.+    --+.++...+.+ |++++-...-   ...+-...+||++.  .++|+|+++.+.|+
T Consensus       386 SPi~hl~l~~~~~s~e~e~~----lL~eivd~~i~~-~~ll~~a~~~~~~e~~~~~pSiri~~~a~~seeel~ra~~~ik  460 (467)
T KOG1358|consen  386 SPIIHLQLERSYGSREKEEK----LLEEIVDKCIAE-GVLLTRAKYLEKLERCPIPPSIRICVSAGMSEEELERAAELIK  460 (467)
T ss_pred             CceeeeeecccccchHHHHH----HHHHHHHHHHhh-cceehhhhhhhhcccCCCCCcEEEEEeCCCCHHHHHHHHHHHH
Confidence            22222223321110000000    012234455555 8877754322   11111226899994  89999999999998


Q ss_pred             HHHHH
Q 009517          522 DFHKN  526 (533)
Q Consensus       522 ~~l~~  526 (533)
                      +....
T Consensus       461 ~~~~~  465 (467)
T KOG1358|consen  461 EVASA  465 (467)
T ss_pred             HHHHh
Confidence            87654

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=98.93  E-value=4.3e-07  Score=89.95  Aligned_cols=220  Identities=14%  Similarity=0.118  Sum_probs=148.8

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCccc-HHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGI-KGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGIL  219 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~-~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vl  219 (533)
                      .+++++++...+...-.  . .|.-..|. .+=...+++.+...    ...+.++++++.+.|+..++.++. . +.+|+
T Consensus        40 ~~e~iea~~~~~~~~v~--L-e~~l~~g~~~~R~~~~~~~~~~~----~~aea~~ivnnn~aAVll~~~al~-~-~~EvV  110 (395)
T COG1921          40 SPEAIEAMKEAMRAPVE--L-ETDLKTGKRGARLTELAELLCGL----TGAEAAAIVNNNAAAVLLTLNALA-E-GKEVV  110 (395)
T ss_pred             CHHHHHHHHHHhcccce--e-eeecccchhhHHHHHHHHHHhcc----cchhheeeECCcHHHHHHHHhhhc-c-CCeEE
Confidence            78999998888876433  3 44433332 22222444444332    336789999999999999999886 4 44444


Q ss_pred             EcC-----CcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCC-CCccCCCHHHHH
Q 009517          220 CPI-----PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGN-PTGQVLAEENQR  293 (533)
Q Consensus       220 v~~-----p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~N-PtG~~~s~~~l~  293 (533)
                      +.-     ++.+...++++.+|++++.+-...    .....+++.+|.+      ++++++-.+-+| +--..++   .+
T Consensus       111 is~g~lV~gg~~~v~d~~~~aG~~l~EvG~tn----~t~~~d~~~AIne------~ta~llkV~s~~~~f~~~l~---~~  177 (395)
T COG1921         111 VSRGELVEGGAFRVPDIIRLAGAKLVEVGTTN----RTHLKDYELAINE------NTALLLKVHSSNYGFTGMLS---EE  177 (395)
T ss_pred             EEccccccCCCCChhHHHHHcCCEEEEecccC----cCCHHHHHHHhcc------CCeeEEEEeecccccccccc---HH
Confidence            432     578889999999999999887543    3578999999988      788887665544 2222344   78


Q ss_pred             HHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHH
Q 009517          294 AIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVR  373 (533)
Q Consensus       294 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~  373 (533)
                      +++++|+++|+++|+|.+-...+.    +-+.+..++..    ..|   +++.|-.|.| |  |-+.|.+++   .++++
T Consensus       178 ~l~~ia~~~~lpvivD~aSg~~v~----~e~~l~~~la~----GaD---LV~~SgdKll-g--GPqaGii~G---kKelI  240 (395)
T COG1921         178 ELVEIAHEKGLPVIVDLASGALVD----KEPDLREALAL----GAD---LVSFSGDKLL-G--GPQAGIIVG---KKELI  240 (395)
T ss_pred             HHHHHHHHcCCCEEEecCCccccc----cccchhHHHhc----CCC---EEEEecchhc-C--CCccceEec---hHHHH
Confidence            899999999999999998865432    12222233221    245   7788889988 4  888999998   99999


Q ss_pred             HHHHHhhh-ccccCChHHHHHHHHHcC
Q 009517          374 EQIYKVAS-VNLCSNISGQILASLVMS  399 (533)
Q Consensus       374 ~~l~~~~~-~~~~~~~~~q~a~~~~L~  399 (533)
                      +.+++..- ..+-......++..++|+
T Consensus       241 ~~lq~~~l~Ralrv~K~tla~l~~aLe  267 (395)
T COG1921         241 EKLQSHPLKRALRVDKETLAALEAALE  267 (395)
T ss_pred             HHHHhhhhhhhhhcCcHhHHHHHHHHH
Confidence            88876431 233444445455555543

>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]

Probab=98.93  E-value=4.1e-08  Score=93.78  Aligned_cols=221  Identities=19%  Similarity=0.237  Sum_probs=141.6

Q ss_pred             CHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCcc-CCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHh
Q 009517          253 ETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSR  331 (533)
Q Consensus       253 d~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~-~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~  331 (533)
                      .++++|+.|.++++....+.+||+...+...|- -.|++..+.|.++|++|++.+|+||++++..-+|.  ++.-...  
T Consensus       254 Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk--~WaHehw--  329 (484)
T KOG1405|consen  254 CLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGK--FWAHEHW--  329 (484)
T ss_pred             HHHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCc--eeeehhc--
Confidence            368899999998776667888888877887774 77999999999999999999999999998665553  3332221  


Q ss_pred             hcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHH
Q 009517          332 SMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYES  410 (533)
Q Consensus       332 ~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~  410 (533)
                      ++.. -+|     +.+|||-|.  +|   ||..    +++++-. +..+. .||++.+.-...+..+++..         
T Consensus       330 ~l~~-PpD-----~vTFSKK~q--~g---Gffh----~~~frpn-~pYrifNTWmGdP~k~lll~~vv~~I---------  384 (484)
T KOG1405|consen  330 NLDS-PPD-----VVTFSKKFQ--TG---GFFH----DEEFRPN-EPYRIFNTWMGDPSKNLLLEEVVQEI---------  384 (484)
T ss_pred             CCCC-Ccc-----ceehhhhhh--cC---cccc----CcccCCC-chHHHhhhhcCChHHHHHHHHHHHHH---------
Confidence            1110 244     668999873  33   5664    4444321 11222 56777777766666655321         


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC----CC-ceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccce
Q 009517          411 YCAERDGILSSLARRAKTLEDAFNSL----EG-ITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGI  485 (533)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~l~~~L~~~----~g-~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV  485 (533)
                         ..+.+.+..+.-.+.|...|.++    || +.-.++.|.|..|   +.|.+..          -+.++ ..++-+||
T Consensus       385 ---~~~~Ll~n~~~vG~~l~~gL~~Lq~~~p~~~~~~RGrGTF~a~---d~ps~~~----------Rdk~i-~~~~~nGv  447 (484)
T KOG1405|consen  385 ---KREDLLNNVAHVGKALLKGLLELQAKYPGKINNLRGRGTFIAW---DCPSGSI----------RDKLI-LIARLNGV  447 (484)
T ss_pred             ---hHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhcccccceEEEE---eCCChHH----------HHHHH-HHHHHcCc
Confidence               12455566666777788887765    55 5567788988777   3333211          12222 45566788


Q ss_pred             EEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHHHH
Q 009517          486 VLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       486 ~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~  526 (533)
                      .+-.   +|    ...||+-++  -++...+-+++++.+.+..
T Consensus       448 ~~GG---Cg----~~siRfRPsLvf~~~Ha~i~l~~~~k~l~~  483 (484)
T KOG1405|consen  448 NLGG---CG----DKSIRFRPSLVFRKHHADIFLDIFDKILAG  483 (484)
T ss_pred             eecc---cc----cceeeeccceeehhhhHHHHHHHHHHHhcc
Confidence            7763   22    124666664  4555677788888877653

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=98.93  E-value=2.3e-07  Score=88.08  Aligned_cols=283  Identities=16%  Similarity=0.189  Sum_probs=176.2

Q ss_pred             HHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc-CCCCeEEEcCCc-Ccc----hHHHHHHhCCeEEEEecC
Q 009517          172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-SENDGILCPIPQ-YPL----YSASIALHGGTLVPYYLD  245 (533)
Q Consensus       172 lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~Vlv~~p~-~~~----~~~~~~~~g~~~~~v~~~  245 (533)
                      |-..+|-+++      ..+.+++++.+++--+...+.+.++ .+|++|++++-. |+.    ....+..+|..   +.+.
T Consensus        81 lgdklApLiG------A~~~Evvv~dtts~nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~---~~~~  151 (407)
T COG3844          81 LGDKLAPLIG------ARAGEVVVTDTTSINLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLLGIG---YDLE  151 (407)
T ss_pred             HHHHhhhhhc------CCCCceEEeCCcchHHHHHHHHHhccCCCceEEeecCCCCCcchhhhcchhhhhccc---ccce
Confidence            3444455544      6688999999998888888877752 358888888743 332    22334444433   1111


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCccc
Q 009517          246 EATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHS  325 (533)
Q Consensus       246 ~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~  325 (533)
                          ..+.++++++++++      ++.+|++++.+.-||..+.   +.+|.+++++++++++.|=+++....    +. .
T Consensus       152 ----~~~~P~~~~~~~~d------d~AvV~L~~V~y~TGql~d---m~aiT~~AH~~galv~wDLAHsaGav----p~-~  213 (407)
T COG3844         152 ----GVIAPRALEEAITD------DVAVVLLSHVNYKTGQLLD---MRAITALAHQHGALVGWDLAHSAGAV----PV-D  213 (407)
T ss_pred             ----eeeChHHHHHhhcc------ceEEEEeccccccccceee---HHHHHHHHHhcCceEEeehhcccCCc----ce-e
Confidence                14578899999988      7999999999999999998   99999999999999999999986332    11 0


Q ss_pred             HHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHH--------------------hh---h-
Q 009517          326 FKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYK--------------------VA---S-  381 (533)
Q Consensus       326 ~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~--------------------~~---~-  381 (533)
                         + ...   ..|   +-|++--|.+.|=||-..|..+.    ++..+....                    ..   . 
T Consensus       214 ---L-h~~---gaD---faigcsyKYLNgGPGapa~l~v~----~~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf  279 (407)
T COG3844         214 ---L-HAA---GAD---FAIGCSYKYLNGGPGAPAGLFVA----PRHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRF  279 (407)
T ss_pred             ---e-ccc---CCC---eeeeeeceeccCCCCCceeEEec----cccccccccccccccCCCCcchhhhccCcCccccce
Confidence               0 111   223   66888889997778866555443    222211111                    00   0 


Q ss_pred             ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C--CceEecCC-----ceeEEecc
Q 009517          382 VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL-E--GITCNKAE-----GAMYLFPR  453 (533)
Q Consensus       382 ~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~--g~~~~~~~-----gg~~~~~~  453 (533)
                      ...+++.++.+++...|+.       |...  .+.+++++--...+++.+.++.. +  ++.+..|.     |+-..+  
T Consensus       280 ~~gt~~V~s~aal~~aLDi-------fa~~--~i~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~--  348 (407)
T COG3844         280 LCGTQPVLSLAALEGALDI-------FADV--DITELRKKSLALTDYFIELVEARCEYYGLTLVTPRAHEERGSQVSL--  348 (407)
T ss_pred             eeCCcchhhhHHHhhhhhh-------hhhc--CHHHHHHhhhHHHHHHHHHHHhccccCCcEEeccchhhhccceeeE--
Confidence            1133455555655555542       1111  14555555455566666666553 2  56665553     332222  


Q ss_pred             cCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec---CCcCcHHHHHHHHHHHHHHHH
Q 009517          454 IQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL---PQEDKIPAIVTRLTDFHKNFM  528 (533)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~---~~~e~i~~~~~~l~~~l~~~~  528 (533)
                       ..|              ....+.+.|.++||..-    |- .++  .+|+.++   ++-+++=.+++.|.+++++..
T Consensus       349 -~hp--------------~~~~V~qaLi~rGVigD----~R-~P~--vlRfgftPlY~~~~DVw~AV~~L~evL~t~a  404 (407)
T COG3844         349 -YHP--------------HGYQVMQALIDRGVIGD----FR-EPD--VLRFGFTPLYVSFVDVWDAVDALEEVLDTLA  404 (407)
T ss_pred             -ecC--------------cHHHHHHHHHHcCcccc----cc-CCC--eeeecCccceechhHHHHHHHHHHHHHHhhc
Confidence             122              22235577788999653    22 233  8999996   788889999999999988653

>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]

Probab=98.87  E-value=5.6e-07  Score=89.54  Aligned_cols=308  Identities=16%  Similarity=0.184  Sum_probs=192.4

Q ss_pred             ccHHHHHHHHHHHHhhcCCCCCCCCE-EEcCChHHHHHHHHHHhc---cC-CC---CeEEEcCCcCcchHHHHHHhCCeE
Q 009517          168 GIKGLRDTIAAGIEARDGFPADPNDI-FLTDGASPAVHMMMQLLI---RS-EN---DGILCPIPQYPLYSASIALHGGTL  239 (533)
Q Consensus       168 G~~~lr~aia~~~~~~~g~~~~~~~i-~~t~G~~~al~~~~~~l~---~~-~g---d~Vlv~~p~~~~~~~~~~~~g~~~  239 (533)
                      +..++..++.+++...++.+  .+.+ ..|.|+++++..+-+...   .. .|   ..++.+.-.+..+...++.++.++
T Consensus       117 ~~~~~e~~~Vnm~~~L~~~~--~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~a~eK~a~yf~v~l  194 (491)
T KOG1383|consen  117 VVRKLEAECVNMIANLFNAP--SDSCGCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNVHAAFEKAARYFEVEL  194 (491)
T ss_pred             hhHHHHHHHHHHHHHHhcCC--ccccCccccccchHHHHHHHHHHHHHHhccCCCCccccchHHHHHHHHHHHhhEEEEE
Confidence            35677888888888877755  3333 668899999666555432   01 12   357777788888888899999999


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHH-cCCEEEEcccccccccc
Q 009517          240 VPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK-EGLVLLADEVYQENVYV  318 (533)
Q Consensus       240 ~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~-~~~~lI~De~y~~~~~~  318 (533)
                      ..+|+++ .+|.+|+..+.+.+.+      ++..++..-|+-|+|.+   |.+++|.++..+ +++.+.+|.+-.+|+-.
T Consensus       195 ~~V~~~~-~~~~~D~~k~~~~i~e------Nti~lv~~~~~~p~G~~---e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p  264 (491)
T KOG1383|consen  195 REVPLDE-GDYRVDPGKVVRMIDE------NTIMLVGSLPNFPTGEI---EDVEKLADLLLEIWDIPIHVDACLGGFINP  264 (491)
T ss_pred             Eeeeccc-cceEecHHHHHHHhcc------ceEEEEEEcCCCCccch---hhHHHHHHHHHHHhCCceeecccCcccccc
Confidence            9999997 5899999999999998      89999999999999998   559999999999 99999999999987752


Q ss_pred             -CCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHH-HH-------HHhh-hccccC--
Q 009517          319 -PEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVRE-QI-------YKVA-SVNLCS--  386 (533)
Q Consensus       319 -~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~-~l-------~~~~-~~~~~~--  386 (533)
                       +.....       .++-..+.+.-|.+.+ +| + |+.=-.+||++-  .++++.. ++       -... +.|.+.  
T Consensus       265 ~~~~~~~-------~fdFr~p~V~Sisa~~-HK-Y-Gl~~~G~~~vl~--r~k~~~~~q~~~~~~w~Gg~y~s~TlngSR  332 (491)
T KOG1383|consen  265 AGYLNEE-------EFDFRVPGVTSISADG-HK-Y-GLAPAGSSWVLY--RNKELLPHQLFFHTDWLGGIYASPTLNGSR  332 (491)
T ss_pred             ccccCcc-------ccccCCCCceeEeecc-ce-e-eeeecCcEEEEE--cccccccceEEEeccccCccccCcccccCC
Confidence             111100       1100134544444433 45 3 444444688876  3443321 11       0011 122222  


Q ss_pred             ---ChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEec-CCceeEEecccCCCHHHHH
Q 009517          387 ---NISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNK-AEGAMYLFPRIQLPEKAIK  462 (533)
Q Consensus       387 ---~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~gg~~~~~~~~~~~~~~~  462 (533)
                         ...+|+++..-|.        +    +...+..+.+.+....|++.+++++++.++. |.-++.+|-.-.+      
T Consensus       333 ~g~~va~~wa~~~~lG--------~----eGY~~~~~~ive~~~~l~egie~i~~i~i~gkp~vs~~~~~s~~~------  394 (491)
T KOG1383|consen  333 PGSQVAAQWAALMSLG--------E----EGYRENTQNIVETARKLREGIENIKGIKIVGKPLVSFILFGSNDV------  394 (491)
T ss_pred             cccHHHHHHHHHHHhh--------H----HHHHHHHHHHHHHHHHHHHhhhccccceecCCCcEEEEEccCCcc------
Confidence               2334444433331        1    2223344456667778999999988887764 4545444421111      


Q ss_pred             HHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec-CCcCcHHHHHHHHHHHHHHHHHH
Q 009517          463 AAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-PQEDKIPAIVTRLTDFHKNFMDK  530 (533)
Q Consensus       463 ~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~~~~l~~~l~~~~~~  530 (533)
                               +...+..+|.+.|..+. +..|.  . .-++-+... ..++--++++..|+++++++.+.
T Consensus       395 ---------~i~elsd~l~~~GW~ln-alq~P--~-a~Hi~vt~~~~~~~~A~~~v~Di~~~~~el~~~  450 (491)
T KOG1383|consen  395 ---------NIFELSDLLRKKGWILN-ALQFP--A-AIHICVTRVHAREDVADRFVADIRKVVEELKSL  450 (491)
T ss_pred             ---------chhhhhHHHHhcCcCcc-ccCCC--C-ceEEEEEeeeccHHHHHHHHHHHHHHHHHHHhC
Confidence                     12224467788887554 33332  2 225555544 34444577888888888887653

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=98.71  E-value=4.6e-06  Score=92.45  Aligned_cols=280  Identities=12%  Similarity=0.108  Sum_probs=162.3

Q ss_pred             CcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc--CCCCeEEEcCCcCcchHHHHH----HhCCeE
Q 009517          166 SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR--SENDGILCPIPQYPLYSASIA----LHGGTL  239 (533)
Q Consensus       166 ~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--~~gd~Vlv~~p~~~~~~~~~~----~~g~~~  239 (533)
                      ++|..+..=.+...+.+..|  .+..|.-+-.+++.+.+.++.+...  +.+++|++++-.|+.+...++    ..|.++
T Consensus       104 sQG~Le~l~e~Qt~i~eLtG--m~~aNaSl~d~atA~aEa~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v  181 (939)
T TIGR00461       104 SQGRLEALLNFQTVVSDLTG--LPVANASLLDEGTAAAEAMALSFNVSKKKANKFFVAKDLHPQTKSVLHTRAKPFGIEV  181 (939)
T ss_pred             hhHHHHHHHHHHHHHHHHHC--CChhhhhccchhhHHHHHHHHHHHhhcCCCCEEEECCCCCcchHHHHHHHHHhcCcEE
Confidence            44544433334444444445  4556777777888877766665421  234789999999988775554    678888


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccC
Q 009517          240 VPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVP  319 (533)
Q Consensus       240 ~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~  319 (533)
                      +.++          +++|++.+        ++.++++.+|+. .|.+.   ++++|+++++++|.+++++.--..+.  .
T Consensus       182 ~~~~----------~~~l~~~~--------~~~~v~~q~Pn~-~G~ie---d~~~i~~~~h~~gal~~~~ad~~al~--l  237 (939)
T TIGR00461       182 IVVD----------CSDIKKAV--------DVFGCLLQYPAT-DGSIL---DYKQLIDALHSHKSLVSVAADLMALT--L  237 (939)
T ss_pred             EEEc----------HHHHhhcC--------CEEEEEEECCCC-CeEEe---cHHHHHHHHHHcCCEEEEEechHHhC--C
Confidence            7763          34444433        367888889875 78885   49999999999999999853332211  1


Q ss_pred             CCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCC----CCCeeEEEEEecCCHHHHHHHHH-----------------
Q 009517          320 EKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGE----CGKRGGYMEVTGFSAEVREQIYK-----------------  378 (533)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl----~G~riG~v~~~~~~~~~~~~l~~-----------------  378 (533)
                      -   .+.    -++   ..|   |++++ +|.| |+    .|--.|++.+   .++++..+-.                 
T Consensus       238 l---~~P----ge~---GaD---i~vg~-~q~f-g~p~g~GGP~aG~~a~---~~~l~r~lPgrivG~s~D~~G~~~~~l  299 (939)
T TIGR00461       238 L---TPP----GHY---GAD---IVLGS-SQRF-GVPMGYGGPHAAFFAV---KDEYNRKMPGRIVGVSKDALGNTALRL  299 (939)
T ss_pred             c---CCH----HHc---CCc---EEeeC-CCcc-CCCCCCCCCceeeeee---cHhhHhhCCCCceeEEecCCCCcccee
Confidence            1   111    122   234   44443 4545 33    1444788776   5555544310                 


Q ss_pred             --------hhh--cc--ccCChHHHHHHHHHcCCCCCCChhHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCCCceEecC
Q 009517          379 --------VAS--VN--LCSNISGQILASLVMSPPKVGDESYESY--CAERDGILSSLARRAKTLEDAFNSLEGITCNKA  444 (533)
Q Consensus       379 --------~~~--~~--~~~~~~~q~a~~~~L~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~  444 (533)
                              +..  .+  .|.+....+..+.+          |..+  -+-++++.++...+..++.+.|.+. |+++..+
T Consensus       300 ~LqtReqhIrRekAtSNICt~qaL~a~~a~~----------Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~~-G~~~~~~  368 (939)
T TIGR00461       300 ALQTREQHIRRDKATSNICTAQVLLANVASS----------YCVYHGPKGLKNIARRIHSLTSILANGLEND-PHELINK  368 (939)
T ss_pred             ecccccccccccccCcchhHHHHHHHHHHHH----------HHHHHCHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCC
Confidence                    000  11  12222221111111          1111  1336677777888888999999985 8887655


Q ss_pred             CceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHH
Q 009517          445 EGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLT  521 (533)
Q Consensus       445 ~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~  521 (533)
                        .||=.+.+..+.           .+.+.. .+.+.++||.+..       ...+.+++|+.  .+.++|+.+++.+.
T Consensus       369 --~fF~~~~v~~~~-----------~~~~~i-~~~~~~~gi~l~~-------~~~~~i~~s~~E~~t~~di~~l~~~~~  426 (939)
T TIGR00461       369 --TWFDTLTVKVGN-----------GISSEL-LKAAEEFNINLRA-------VDTTTVGIALDETTTKADVENLLKVFD  426 (939)
T ss_pred             --CccceEEEEeCC-----------CCHHHH-HHHHHHCCCeeee-------cCCCEEEEEeecCCCHHHHHHHHHHhc
Confidence              333222233220           112333 3556678999774       11237999996  78889999999884

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=98.65  E-value=1.9e-06  Score=85.44  Aligned_cols=317  Identities=15%  Similarity=0.145  Sum_probs=164.0

Q ss_pred             HHHHHHHHHHhhcCCCCCCCCEEEcCChHH-HHHHHHHHhc-cCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCC-
Q 009517          172 LRDTIAAGIEARDGFPADPNDIFLTDGASP-AVHMMMQLLI-RSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEAT-  248 (533)
Q Consensus       172 lr~aia~~~~~~~g~~~~~~~i~~t~G~~~-al~~~~~~l~-~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~-  248 (533)
                      |...++..+-+..|.. +....++.+.+|. .+.+.+.++. ...++.|+.+.-.+..-..++..+|.+++.++....+ 
T Consensus        57 ltn~l~~d~~~~~G~~-~~~~~~~vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqkSc~kai~~AGl~~~vV~~~~~~d  135 (389)
T PF05889_consen   57 LTNSLVLDALRLAGLR-SVKSCFVVPMATGMSLTLCLLALRMRPKAKYVIWPRIDQKSCFKAIERAGLEPVVVENVLEGD  135 (389)
T ss_dssp             HHHHHHHHHHHHTTHT-THCEEEEESS-HHHHHHHHHHHHHHHCT--EEEEEEEETHHHHHHHHHTT-EEEEE-EEEETT
T ss_pred             HHHHHHHHHHHHcCCc-cccceEEEecccccHHHHHHHHHhcccCCceEEEeeccccchHHHHHhcCCeEEEeeccCCCC
Confidence            3444444444445533 1344666655543 2334444442 1346889988877666666788899999998854332 


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHH
Q 009517          249 GWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKK  328 (533)
Q Consensus       249 ~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~  328 (533)
                      ....|.+.+++.+++.   |++..+.++++++--.|..  .|++++|+++|++||+..|+..+|.-   ..   ..-...
T Consensus       136 ~l~td~~~ie~~i~~~---G~~~iLcvltttscfapr~--~D~i~~IakiC~~~~IPhlvNnAYgv---Q~---~~~~~~  204 (389)
T PF05889_consen  136 ELITDLEAIEAKIEEL---GADNILCVLTTTSCFAPRL--PDDIEEIAKICKEYDIPHLVNNAYGV---QS---SKCMHL  204 (389)
T ss_dssp             EEEEHHHHHHHHHHHH---CGGGEEEEEEESSTTTTB------HHHHHHHHHHHT--EEEEGTTTT---T----HHHHHH
T ss_pred             eeeccHHHHHHHHHHh---CCCCeEEEEEecCccCCCC--CccHHHHHHHHHHcCCceEEccchhh---hH---HHHHHH
Confidence            2345789999999765   4455666677664333443  24699999999999999999999974   11   111111


Q ss_pred             H--HhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCC
Q 009517          329 V--SRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGD  405 (533)
Q Consensus       329 ~--~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~  405 (533)
                      +  +...+  .-|   ++++|.-|+|.  -+..-+-+.+  .++..+..+.+... ..+..+.+-..+-...|     |.
T Consensus       205 i~~a~~~G--Rvd---a~vqS~dkNF~--VPvGgai~As--~~~~~i~~vs~~YpGRas~sp~ld~~itLl~L-----G~  270 (389)
T PF05889_consen  205 IQQAWRVG--RVD---AFVQSTDKNFM--VPVGGAIMAS--FDPSGILAVSKEYPGRASASPSLDLFITLLSL-----GC  270 (389)
T ss_dssp             HHHHHHHS--TCS---EEEEEHHHHHC--EESSHEEEEE--SSHHHHHHHHHTSHSHBTSHHHHHHHHHHHHH-----HH
T ss_pred             HHHHHhcC--Ccc---eeeeecCCCEE--ecCCCcEEEe--cCHHHHHHHHHHhhhhhhcccchHHHHHHHHH-----hh
Confidence            1  11121  122   56999999984  4444444444  47788888876554 22333332222222222     12


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccce
Q 009517          406 ESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGI  485 (533)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV  485 (533)
                      ..|...+.++.+....++++.+.+.+..++. -.........+.+.+. .+...         ...+..++-.+|..+||
T Consensus       271 ~g~~~ll~~r~~~f~~l~erl~~~aee~~e~-ll~~p~N~is~a~tl~-~l~~~---------~~k~~~~lgs~Lf~R~V  339 (389)
T PF05889_consen  271 TGYGALLKERKASFPYLKERLKKWAEEVGER-LLETPRNHISMAFTLD-TLYEI---------SQKDGTFLGSMLFKRGV  339 (389)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTEE-BSSSTT-SSEEEEE-T-TCCTC---------CSSHHHHHHHHHHHTTE
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hcCCCCCCeeEEEECc-cchhh---------ccchhhhHHHHHHhCCc
Confidence            3344444444444444555444444444332 1111112223333221 01110         01233455566777776


Q ss_pred             E----EEcCCCCCC----CCCCceEEEEe--cCCcCcHHHHHHHHHHHHH
Q 009517          486 V----LVPGSGFGQ----VPGTWHFRCTI--LPQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       486 ~----v~pg~~f~~----~~g~~~iRis~--~~~~e~i~~~~~~l~~~l~  525 (533)
                      .    |.|+..+..    .-...|+-++.  +.+.||++.++++|+++++
T Consensus       340 sG~RvV~~~~~~~tsh~~~yp~~Ylt~AsaiG~~~eevd~~v~rL~k~i~  389 (389)
T PF05889_consen  340 SGIRVVTPGGKKQTSHSSNYPCPYLTAASAIGMTREEVDYFVKRLDKIIK  389 (389)
T ss_dssp             ESSEEEETSSCEEETTSS--SSSEEEEEE-TT--HHHHHHHHHHHHHHHH
T ss_pred             ccceeeccCCCcccccCCCCchHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence            4    555443321    00123888855  4899999999999999875

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=98.64  E-value=4.3e-08  Score=96.19  Aligned_cols=263  Identities=16%  Similarity=0.143  Sum_probs=49.9

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHH-HHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLR-DTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGIL  219 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr-~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vl  219 (533)
                      ++++++++.+....+   ...+|.-..|-..-| ..+.+++...    ..++..+++|+...|+.+++..+.  .|.+|+
T Consensus        19 ~~~a~~a~~~~a~~Y---~nLE~dl~~G~Rg~R~~~v~~ll~~l----tgAeaA~VvNnnaAAv~L~l~~la--~~~EvI   89 (367)
T PF03841_consen   19 SEEAIEAVAEVASGY---SNLEYDLETGKRGSRYAHVEELLCEL----TGAEAALVVNNNAAAVLLALNTLA--KGKEVI   89 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccc---cccccccccccccccccccccccccc----cccccccccccccccccccccccc--cccccc
Confidence            678888877766543   244554433322221 1223333322    346778888999999999999886  577888


Q ss_pred             EcCCcCc------chHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCH-HHH
Q 009517          220 CPIPQYP------LYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAE-ENQ  292 (533)
Q Consensus       220 v~~p~~~------~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~-~~l  292 (533)
                      +....-.      -..+++...|++++.+-...    .-.+++++++|++      +|.+|+-.|++|-.-.=++. -.+
T Consensus        90 vsRGelVeiGgsFRip~vm~~sGa~lvEVGttN----~t~~~Dye~AI~e------~Ta~ll~Vh~Sn~~i~GFt~~~~~  159 (367)
T PF03841_consen   90 VSRGELVEIGGSFRIPDVMRQSGARLVEVGTTN----RTHLSDYEKAITE------NTAALLKVHTSNFRIQGFTGEVSL  159 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccc----ccccccccccccc------cccccccccccccccccccccccH
Confidence            7763322      24567788899988886542    4568899999988      79999888988863221111 138


Q ss_pred             HHHHHHHHHcCCEEEEcccccccc----ccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecC
Q 009517          293 RAIVDFCKKEGLVLLADEVYQENV----YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGF  368 (533)
Q Consensus       293 ~~i~~l~~~~~~~lI~De~y~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~  368 (533)
                      +++++++++|++++|+|-.-..+.    | +-..-+++..+...    ..|   +++.|=.|.+ |  |-..|.+++   
T Consensus       160 ~el~~la~~~~lp~i~DlgsG~l~dl~~~-gl~~Ep~v~~~~~~----GaD---lV~fSGdKlL-G--GPQaGiI~G---  225 (367)
T PF03841_consen  160 EELAELAKEHGLPVIVDLGSGLLVDLSPY-GLPDEPTVQEYLAA----GAD---LVTFSGDKLL-G--GPQAGIIVG---  225 (367)
T ss_dssp             -HHHHHHHHHT--EEEE-TTHHHHHHHTT-----------CCCC----T-S---EEEEETTSSS-S--S-S-EEEEE---
T ss_pred             HHHHHHHhhcCCcEEEECCCCCCcCcccc-cCccccHHHHHhhc----CCC---EEEEECCCcC-C--CCCeEEEEe---
Confidence            999999999999999997663221    1 10011222222111    234   7788888988 4  666899998   


Q ss_pred             CHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHH--HHHHHHHHHHHHHHHHHHHHHHHhcC
Q 009517          369 SAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYES--YCAERDGILSSLARRAKTLEDAFNSL  436 (533)
Q Consensus       369 ~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~  436 (533)
                      .+++++++++-.- ..+-..-...+++.+.|+.-...+...++  ....+....+.++++.+.|...|...
T Consensus       226 kk~lI~~lk~~pl~RalrvdK~tla~L~atL~~Y~~~~~~~~~ip~l~ml~~~~~~L~~rA~~l~~~l~~~  296 (367)
T PF03841_consen  226 KKELIEKLKKHPLGRALRVDKLTLAALEATLRLYLDPDKAKEEIPTLRMLTQSLEELRARAERLAAQLKAA  296 (367)
T ss_dssp             EHHHHHHHHHHHHTTT-B--HHHHHHHHHHHHH--------------------------------------
T ss_pred             CHHHHHHHhhCCCcceEeeCHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccc
Confidence            9999999875321 33445555555555555311000000000  11223334455666666677666654

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=98.60  E-value=2e-05  Score=78.08  Aligned_cols=140  Identities=21%  Similarity=0.256  Sum_probs=106.1

Q ss_pred             ccccCC---CcccHHHHHHHHHHHHhhcCCCCCCCCEEEc--CChHH--HHHHHHHHhccCCC----CeEEEcCCcCcch
Q 009517          160 TGAYSH---SQGIKGLRDTIAAGIEARDGFPADPNDIFLT--DGASP--AVHMMMQLLIRSEN----DGILCPIPQYPLY  228 (533)
Q Consensus       160 ~~~Y~~---~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t--~G~~~--al~~~~~~l~~~~g----d~Vlv~~p~~~~~  228 (533)
                      .+-|.|   .+|+.++...+.+|+.+.-|    .|.|-+.  .|++.  +-.++++..-...|    +.|++|+-.+...
T Consensus        95 iHP~~pe~~vqG~l~li~~Lq~~L~~ITG----~DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTN  170 (496)
T COG1003          95 IHPFQPEEQVQGYLELIYELQEWLKEITG----MDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTN  170 (496)
T ss_pred             cCCCCChHHHHHHHHHHHHHHHHHHHhcC----CceeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCC
Confidence            455655   57899999999999998655    4455443  33322  22233333321222    6799999999998


Q ss_pred             HHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEE
Q 009517          229 SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLA  308 (533)
Q Consensus       229 ~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~  308 (533)
                      ...+..+|.+++.|++++++  .+|+++|++++.+      ++.++.|++||. -|+-  ++.+++|+++.+++|-.|..
T Consensus       171 PASAam~G~~VV~V~~~~~G--~VDlddLk~k~~~------~~AalMiTnPsT-~GvF--E~~I~ei~~ivH~~Gg~vY~  239 (496)
T COG1003         171 PASAAMAGFKVVVVKCDENG--NVDLDDLRAKAED------NLAALMITNPST-LGVF--EEDIREICEIVHEAGGQVYY  239 (496)
T ss_pred             hhhHhhcCceEEEEecCCCC--CccHHHHHHHhcc------ceeEEEeccCcc-cccc--hhhHHHHHHHHHHcCCEEEe
Confidence            98999999999999998764  7899999999986      899999999984 3443  56799999999999999999


Q ss_pred             cccccc
Q 009517          309 DEVYQE  314 (533)
Q Consensus       309 De~y~~  314 (533)
                      |.+--.
T Consensus       240 DGANlN  245 (496)
T COG1003         240 DGANLN  245 (496)
T ss_pred             cCcchh
Confidence            987644

>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]

Probab=98.57  E-value=3.4e-06  Score=79.27  Aligned_cols=175  Identities=19%  Similarity=0.227  Sum_probs=119.4

Q ss_pred             ccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCc-CcchHH----------HHHHhC
Q 009517          168 GIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQ-YPLYSA----------SIALHG  236 (533)
Q Consensus       168 G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~-~~~~~~----------~~~~~g  236 (533)
                      |-..|.+..|+.+    |.....-+.-+.+ +++|+..++..++ +|||+.+..... |.....          .++.+|
T Consensus        66 GRdtLe~vyA~vf----~aE~a~VRpq~is-GTHAI~~aLfg~L-RpgDell~i~G~PYDTLeevIG~rg~~~gSL~dfg  139 (416)
T COG4100          66 GRDTLERVYAQVF----GAEAALVRPQIIS-GTHAIACALFGIL-RPGDELLYITGSPYDTLEEVIGLRGEGQGSLKDFG  139 (416)
T ss_pred             chhHHHHHHHHHh----ccccceeeeeeec-chhHHHHHHHhcc-CCCCeEEEecCCcchhHHHHhccCCCCcccHHHhC
Confidence            4455555555554    4223233445555 5699999999988 899997654422 333332          355677


Q ss_pred             CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEe-CCCCCCccCCCHHHHHHHHHHHHHc--CCEEEEccccc
Q 009517          237 GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLAEENQRAIVDFCKKE--GLVLLADEVYQ  313 (533)
Q Consensus       237 ~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~-~p~NPtG~~~s~~~l~~i~~l~~~~--~~~lI~De~y~  313 (533)
                      .....+|+..++  .+|.+.+++++++      ++|+|.+. +-..----.++-+++++++.+.++-  |+++++|.+|.
T Consensus       140 i~Y~~v~Lt~~g--kiD~~~v~~~i~~------~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYG  211 (416)
T COG4100         140 IKYKAVPLTADG--KIDIQAVKTAISD------RTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYG  211 (416)
T ss_pred             cceeecccccCC--cccHHHHHHhcCc------cceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccch
Confidence            888889988654  7999999999998      89999887 4332222247778899999999875  79999999999


Q ss_pred             cccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCC--eeEEEEEecCCHHHHHHH
Q 009517          314 ENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGK--RGGYMEVTGFSAEVREQI  376 (533)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~--riG~v~~~~~~~~~~~~l  376 (533)
                      +|+-.-+ | .       ++   ..|   +..+|+-|+- | .|+  -.||+++   .++++++.
T Consensus       212 EFvE~~E-P-t-------~v---GaD---liAGSLIKNp-G-GgiaktGGYiaG---k~~~ve~~  256 (416)
T COG4100         212 EFVEEKE-P-T-------HV---GAD---LIAGSLIKNP-G-GGIAKTGGYIAG---KAELVEAA  256 (416)
T ss_pred             hhhhccC-c-c-------cc---chh---hhccceeeCC-C-Cceeeccceeec---hHHHHHhh
Confidence            9775432 1 1       11   233   6689999987 3 253  3688887   77887765

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=98.53  E-value=1.3e-05  Score=81.50  Aligned_cols=220  Identities=20%  Similarity=0.251  Sum_probs=120.7

Q ss_pred             CcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc--CCCCeEEEcCCcCcchHHHHHH----hCCeE
Q 009517          166 SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR--SENDGILCPIPQYPLYSASIAL----HGGTL  239 (533)
Q Consensus       166 ~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--~~gd~Vlv~~p~~~~~~~~~~~----~g~~~  239 (533)
                      ++|..+..-.+..++.+.-|.+  .-|.-+-.|++.+.+.++.+...  +.+++|+++.-.++.+...++.    .|.++
T Consensus       105 sQG~Lq~lfe~Qs~i~eLTGmd--vaNaSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~i  182 (429)
T PF02347_consen  105 SQGRLQALFEYQSMICELTGMD--VANASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAAPLGIEI  182 (429)
T ss_dssp             BHHHHHHHHHHHHHHHHHHTSS--EE-SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCCHCCEEE
T ss_pred             HHHHHHHHHHHHHHHHHhhCCC--ccCCCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhhhCCeEE
Confidence            5676555555555555555633  33444556666666655444321  2335999999999988875544    68899


Q ss_pred             EEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccC
Q 009517          240 VPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVP  319 (533)
Q Consensus       240 ~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~  319 (533)
                      +.++.++..  ..|        .+      ++.+|++.+||. .|.+-+   +++|.++++++|.++++ .+. -+...+
T Consensus       183 v~~~~~~~~--~~d--------~~------~~a~v~vq~Pn~-~G~~ed---~~~i~~~~h~~gal~~~-~ad-~~aL~~  240 (429)
T PF02347_consen  183 VEVPLDEDG--TTD--------DD------DTAAVMVQNPNT-FGVFED---IKEIADIAHAAGALVIV-GAD-PNALGG  240 (429)
T ss_dssp             EEE-BBTTC--SB---------ST------TEEEEEEESS-T-TSB--T---HHHHHHHHHHTT-EEEE-CGG-CCGCCT
T ss_pred             EEecccccC--Ccc--------cc------CeEEEEeecCCC-CceEee---HHHHHHHHHHcCCEEEE-ecC-HHHHhC
Confidence            999987653  233        22      899999999986 688855   99999999999999887 322 222322


Q ss_pred             CCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCC----CCeeEEEEEecCCHHHHHHHH------------------
Q 009517          320 EKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGEC----GKRGGYMEVTGFSAEVREQIY------------------  377 (533)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~----G~riG~v~~~~~~~~~~~~l~------------------  377 (533)
                      -.+   .    -++   ..|   |++++ +|.| |+|    |=-.|++.+   .++++.++-                  
T Consensus       241 l~~---P----ge~---GAD---I~vg~-~Q~f-g~p~~~GGP~~G~~a~---~~~l~r~lPGRiVG~t~D~~G~~~~~l  302 (429)
T PF02347_consen  241 LKS---P----GEY---GAD---IVVGE-HQTF-GIPMGFGGPGAGFFAV---REDLVRQLPGRIVGQTKDADGKRAFVL  302 (429)
T ss_dssp             C-----G----GGG---T-S---EEEEC-CTTT-T---CCC-S--EEEEE----GGGGGGS-S-EEEEEEBCCCSCCEEE
T ss_pred             cCC---h----hhc---Ccc---EEeeC-CCCC-cccCCCCCCCeeeEEE---hhhhhhhCCCceecccccccccceeee
Confidence            111   1    122   245   55655 7877 332    344788877   555554332                  


Q ss_pred             ----------Hhhh-ccccCChHHHHHHHHH-cCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 009517          378 ----------KVAS-VNLCSNISGQILASLV-MSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL  436 (533)
Q Consensus       378 ----------~~~~-~~~~~~~~~q~a~~~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  436 (533)
                                +-+. +..|.+....+.++.+ +.        + .-.+-++++.+....+..++.+.|+++
T Consensus       303 tLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~--------~-~G~~GL~~iA~~~~~~A~yl~~~L~~~  364 (429)
T PF02347_consen  303 TLQTREQHIRREKATSNICTNQALLALAAAIYLA--------Y-LGPEGLREIAERIHLNAHYLAERLKKI  364 (429)
T ss_dssp             E-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHH--------H-HHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred             ccccccccccccchhhhhhhhHHHHHHHHHHHHH--------H-hCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                      1111 2234443333222111 10        0 123457888888999999999999986

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism]

Probab=98.50  E-value=0.00016  Score=72.19  Aligned_cols=147  Identities=20%  Similarity=0.276  Sum_probs=104.2

Q ss_pred             CCcccHHHHHHHHHHHHhhcCCCC--------CCCCEEEcCChHHHHHHHHHHhcc------CCCC------------eE
Q 009517          165 HSQGIKGLRDTIAAGIEARDGFPA--------DPNDIFLTDGASPAVHMMMQLLIR------SEND------------GI  218 (533)
Q Consensus       165 ~~~G~~~lr~aia~~~~~~~g~~~--------~~~~i~~t~G~~~al~~~~~~l~~------~~gd------------~V  218 (533)
                      ...-..||..-+.+|+++..+.+.        +.-.|+.++ ++++...++.+.+.      +.++            .+
T Consensus       107 ssPa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~t-ases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~  185 (511)
T KOG0628|consen  107 SSPACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGT-ASESVLVALLAARTEKIEEIKSRPPELHESSVLARLVA  185 (511)
T ss_pred             cCcchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecC-cchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheE
Confidence            344478999999999998776541        122444444 44665555544321      1111            36


Q ss_pred             EEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHH
Q 009517          219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF  298 (533)
Q Consensus       219 lv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l  298 (533)
                      +..+.++.....++...|.+...++.+.  +|+++.+.|+++|++....|--+ .+++.+..  |-.+-.-|++.+|..+
T Consensus       186 Y~SDqahssveka~~i~~VklR~l~td~--n~~mr~~~L~~AIe~D~arGlIP-f~v~at~G--TT~~ca~D~l~elg~V  260 (511)
T KOG0628|consen  186 YCSDQAHSSVEKACLIAGVKLRALPTDE--NFGMRGDTLRKAIEEDIARGLIP-FFVCATLG--TTSSCAFDELEELGPV  260 (511)
T ss_pred             EecCcccchHHHhHhhcceeEEEeeccc--CcCCCHHHHHHHHHHHHhCCCcc-EEEEEeec--CccccccccHHHhcch
Confidence            7788888899999999999999999886  89999999999999986666333 33333432  2223344679999999


Q ss_pred             HHHcCCEEEEccccccccc
Q 009517          299 CKKEGLVLLADEVYQENVY  317 (533)
Q Consensus       299 ~~~~~~~lI~De~y~~~~~  317 (533)
                      |+++|+|+.+|.+|+|-.|
T Consensus       261 c~~~glWLHVDAAYAGsa~  279 (511)
T KOG0628|consen  261 CREEGLWLHVDAAYAGSAF  279 (511)
T ss_pred             hhhcCEEEEeehhhccccc
Confidence            9999999999999997555

>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]

Probab=98.43  E-value=0.00013  Score=71.16  Aligned_cols=320  Identities=16%  Similarity=0.144  Sum_probs=171.3

Q ss_pred             cCCCCHHHHHHHHHHHhcCCCC--CccccCC-CcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC
Q 009517          137 QGLFSADSIERAWQILDQIPGR--ATGAYSH-SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS  213 (533)
Q Consensus       137 ~~~~p~~v~~~~~~~~~~~~~~--~~~~Y~~-~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~  213 (533)
                      |..+|++|++.+.+.+.+..+.  +.++-.. ..-..++.+...+.+.+.++++-+.+=+++-.|++.....+...++ .
T Consensus        13 Pa~lp~~vL~~a~~e~~~~~g~g~svme~SHRsk~~~~v~~~a~~~lreLl~iPd~Y~VlflqGGat~qf~~~p~nLl-~   91 (365)
T COG1932          13 PAALPPEVLQQAQKELLDWNGLGMSVMEISHRSKEFKNVLEEAEKDLRELLNIPDDYKVLFLQGGATGQFAMAPMNLL-G   91 (365)
T ss_pred             cccCCHHHHHHHHHHHhhhccCCcceeeeccccHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCccHHHHHHHHHhhh-c
Confidence            4455899999998877653220  0111111 1113445555556666666766555444555677888888888887 3


Q ss_pred             CCCeEEEcCCcCcchHH-HHHHhCCeEE-EEecCCCCCCC--CCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCH
Q 009517          214 ENDGILCPIPQYPLYSA-SIALHGGTLV-PYYLDEATGWG--LETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAE  289 (533)
Q Consensus       214 ~gd~Vlv~~p~~~~~~~-~~~~~g~~~~-~v~~~~~~~~~--ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~  289 (533)
                      ....-++....|..... .++..+..+. ........+|+  ++++...  +.+      +...|.+|.-..-+|+-++.
T Consensus        92 ~~~~~yv~~g~Ws~~a~~eA~~~~~~~~~~~~~~~~~~~~~iP~~~~~~--~~~------~~ayv~~~~NeTi~Gv~v~~  163 (365)
T COG1932          92 KRGTDYVDTGAWSEFAIKEAKKVGKQPKLIDARIEEAGYGSIPDLSKWD--FSD------NDAYVHFCWNETISGVEVPE  163 (365)
T ss_pred             ccCceeEeeeehhHhHHHHHHHhcccccccccceeccCccCCCChhhcc--cCC------CccEEEEecCCcccceEccC
Confidence            33221566667765432 3344443221 11111222333  3444333  222      33336666555566876551


Q ss_pred             HHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCC
Q 009517          290 ENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFS  369 (533)
Q Consensus       290 ~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~  369 (533)
                        ...+   ..  +.++|+|....-|..     ..++..+         |   ++-.|..|++ |..|  ++.++.   .
T Consensus       164 --~p~~---~~--~~~~v~D~SS~ilsr-----~iDvsk~---------d---viyagaQKnl-GpaG--ltvvIv---r  213 (365)
T COG1932         164 --LPDI---GS--DGLLVADASSAILSR-----PIDVSKY---------D---VIYAGAQKNL-GPAG--LTVVIV---R  213 (365)
T ss_pred             --CCCC---CC--CceEEEecccHHhcC-----CCChhHc---------c---eEEEehhhcc-Cccc--eEEEEE---c
Confidence              1111   11  278899976654322     1222221         2   4456889999 7777  777777   8


Q ss_pred             HHHHHHHHHh-------------hhccccC-ChHHHHHHHHHcCCCCCCChhHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 009517          370 AEVREQIYKV-------------ASVNLCS-NISGQILASLVMSPPKVGDESYESYCAE---RDGILSSLARRAKTLEDA  432 (533)
Q Consensus       370 ~~~~~~l~~~-------------~~~~~~~-~~~~q~a~~~~L~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~  432 (533)
                      +++++++...             ...+++. ++++-+.....+           +|+..   ++.+.++-+++.+.|++.
T Consensus       214 ~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~-----------~Wlk~~GGl~~~~~rn~~ka~~LY~~  282 (365)
T COG1932         214 PDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVF-----------KWLKSQGGLEALEARNQAKAQLLYDW  282 (365)
T ss_pred             HHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHH-----------HHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            8888877553             1123443 444444444444           24443   677888888889999999


Q ss_pred             HhcCCCce--Ee--cCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec-
Q 009517          433 FNSLEGIT--CN--KAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-  507 (533)
Q Consensus       433 L~~~~g~~--~~--~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-  507 (533)
                      +++- +|.  .+  ..+.-|.+.+.+.  ..          +-+..|+.+ ++++|+..--|..   ..|  .+|+|+. 
T Consensus       283 id~s-~fy~~~v~~~~RS~mnV~f~~~--~~----------~ld~~fv~e-ae~~gl~~lkGhr---~vg--GmRasiyn  343 (365)
T COG1932         283 IDKS-DFYRNLVAKANRSRMNVTFTLV--DA----------ELDKGFVAE-AEAAGLIYLKGHR---SVG--GLRASIYN  343 (365)
T ss_pred             HHhC-CccccccchhhccceeEEEEcC--cH----------HHHHHHHHH-HHHcCCceecccc---CCC--ceeeeeec
Confidence            9876 322  11  2334555554433  11          114455555 4556776665521   222  4899994 


Q ss_pred             -CCcCcHHHHHHHHHHHHH
Q 009517          508 -PQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       508 -~~~e~i~~~~~~l~~~l~  525 (533)
                       .+.++++.+++-|+.+.+
T Consensus       344 A~~~e~veaL~~fm~~f~~  362 (365)
T COG1932         344 AVPLEDVEALTDFMDWFEE  362 (365)
T ss_pred             CCCHHHHHHHHHHHHHHHH
Confidence             666666655555555443

>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]

Probab=98.42  E-value=0.0002  Score=70.78  Aligned_cols=333  Identities=14%  Similarity=0.142  Sum_probs=171.2

Q ss_pred             ccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC--CC----------CeE-EEcCCcCc
Q 009517          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS--EN----------DGI-LCPIPQYP  226 (533)
Q Consensus       160 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~--~g----------d~V-lv~~p~~~  226 (533)
                      ...|--..+..-..+.+-..+.+.-|++...|.|+- +||+-+...++.+...+  |+          +-| ..++-++.
T Consensus       130 ~~TYEiAPvF~lmE~~vl~km~~ivGw~~~~DgIf~-pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHY  208 (510)
T KOG0629|consen  130 MFTYEIAPVFVLMEEEVLAKMREIVGWEEGGDGIFA-PGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHY  208 (510)
T ss_pred             CceEEecceEEeehHHHHHHHHHHhCCCCCCCceec-CCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchh
Confidence            444544444433444444555555576666556654 55544444444443211  22          223 34557788


Q ss_pred             chHHHHHHhC---CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcC
Q 009517          227 LYSASIALHG---GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEG  303 (533)
Q Consensus       227 ~~~~~~~~~g---~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~  303 (533)
                      +...++..+|   -.++.|+.++.+  .+++++||+.|...+.+|..+-.|-.+.-..--|..   +.+..|+++|++|+
T Consensus       209 Si~kaAa~lg~gtd~c~~v~t~e~G--km~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAF---DdL~~iadiC~k~~  283 (510)
T KOG0629|consen  209 SIKKAAAFLGLGTDHCIKVKTDERG--KMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAF---DDLNGIADICEKHK  283 (510)
T ss_pred             hHHHHHHHhccCCceeEEecccccC--ccchHHHHHHHHHHHhcCCCCeEEEecCCceeeecc---CcHHHHHHHHHhcC
Confidence            8888889988   578888887653  899999999999886655333222222223444665   44999999999999


Q ss_pred             CEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhc-
Q 009517          304 LVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASV-  382 (533)
Q Consensus       304 ~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~-  382 (533)
                      +|+.+|.+|.+...-.. .+.   ..+..+   ++-+.  +-.+-+|.+ | +.+..+..+.  ..+.++.+....... 
T Consensus       284 lWmHvDAAwGGglLmS~-k~R---~kl~Gi---era~S--vtwnpHK~~-g-aplqCsa~l~--r~~gll~~Cn~~~A~Y  350 (510)
T KOG0629|consen  284 LWMHVDAAWGGGLLMSR-KHR---HKLTGI---ERANS--VTWNPHKLM-G-APLQCSAFLT--REEGLLQRCNQMSAIY  350 (510)
T ss_pred             EEEEeecccccccccCh-hhH---hhccCc---cccCc--eeecHHHhh-c-CcchhhHHHH--HHHHHHHhhcccchhh
Confidence            99999999987222111 010   111222   22211  245667877 5 5677776654  122233333221110 


Q ss_pred             ------cccCChHHHHHHHHHcCCCCCCChhHHHHHH-------HHHHHHHHHHHHHHHHHHHHhcCCCceE-ec--CC-
Q 009517          383 ------NLCSNISGQILASLVMSPPKVGDESYESYCA-------ERDGILSSLARRAKTLEDAFNSLEGITC-NK--AE-  445 (533)
Q Consensus       383 ------~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~L~~~~g~~~-~~--~~-  445 (533)
                            .+..+-   -.....+.-+.+ ...|..|.-       -.++..+.+-+.++++.+.|++.+++.. +.  |+ 
T Consensus       351 LFq~dK~YdvS~---DTgdK~iQCGRh-~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~~~~l~~~~pe~  426 (510)
T KOG0629|consen  351 LFQQDKFYDVSY---DTGDKAIQCGRH-VDVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREGFEMLFELEPEH  426 (510)
T ss_pred             hhccCceeeccc---ccccchhhcCcc-ccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhcccceehhcCCCce
Confidence                  000000   000000100000 011222222       2355667778888999999998866433 22  44 


Q ss_pred             ceeEEecccCCCHHHHH-------HHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec---CCcCcHHH
Q 009517          446 GAMYLFPRIQLPEKAIK-------AAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL---PQEDKIPA  515 (533)
Q Consensus       446 gg~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~---~~~e~i~~  515 (533)
                      -.+..|.   .|..+..       ......+-.   -++..+.+.|-.+..-...+  ...++||+-+.   .++++++-
T Consensus       427 ~nv~fw~---vp~~lR~~~~~~e~~~rL~kVaP---kIK~~Mm~~Gt~Mi~YqPl~--~~~nffr~v~sn~a~~~ad~df  498 (510)
T KOG0629|consen  427 VNVCFWY---VPPSLRGWQENPERDSRLVKVAP---KIKERMMKKGTTMIGYQPLG--DKPNFFRMVISNPALTEADLDF  498 (510)
T ss_pred             EEEeecc---CchHhccCcccchhhhHHHhhCc---HHHHHHHhccceeeEecccc--cccchhheecccchhhhhhHHH
Confidence            2333332   2222100       000000000   12223334676665433232  22348998884   57888888


Q ss_pred             HHHHHHHH
Q 009517          516 IVTRLTDF  523 (533)
Q Consensus       516 ~~~~l~~~  523 (533)
                      +++-|+++
T Consensus       499 lldEIerl  506 (510)
T KOG0629|consen  499 LLDEIERL  506 (510)
T ss_pred             HHHHHHHh
Confidence            88888764

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=98.39  E-value=0.00068  Score=67.47  Aligned_cols=266  Identities=18%  Similarity=0.246  Sum_probs=146.5

Q ss_pred             CCEEEcCChHHHHHHHHHHhcc--CCCCeEEEcCCcCcchHHHHHH----hCCeEEEEecCCCCCCCCCHHHHHHHHHHH
Q 009517          191 NDIFLTDGASPAVHMMMQLLIR--SENDGILCPIPQYPLYSASIAL----HGGTLVPYYLDEATGWGLETSEVKKQLEAA  264 (533)
Q Consensus       191 ~~i~~t~G~~~al~~~~~~l~~--~~gd~Vlv~~p~~~~~~~~~~~----~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~  264 (533)
                      -|--+-.++|.+-+.++.+...  .+..+++++.-+|+.+...++.    .|.+++.++.+       |.++++++ ...
T Consensus       138 ANASm~DeaTAaAEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~-------d~~~l~~~-~~~  209 (450)
T COG0403         138 ANASMLDEATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDAD-------DLDDLESA-DDG  209 (450)
T ss_pred             ccchhhhhHHHHHHHHHHHHHhhcCcCceEEecCCCCHHHHHHHHhhcccCceEEEEeccc-------hhhhhhhc-ccc
Confidence            3444445666655555554431  2357899999999998887765    35666666554       67777777 432


Q ss_pred             HhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEc--cccccccccCCCCcccHHHHHhhcCCCCCCceE
Q 009517          265 KAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLAD--EVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL  342 (533)
Q Consensus       265 ~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~D--e~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  342 (533)
                           .+.++++.+|+. .|..  .+++++|.+.+++++.++++=  -.--.+. .+  |        -++   ..|   
T Consensus       210 -----~~~gv~vQyP~~-~G~~--~~d~~~l~~~~h~~~al~~v~aDplaL~LL-~p--P--------Ge~---GAD---  264 (450)
T COG0403         210 -----DVFGVLVQYPNT-FGIV--EEDLRALIEAAHSAGALVIVAADPLALGLL-KP--P--------GEF---GAD---  264 (450)
T ss_pred             -----CeEEEEEecCCC-CCcc--chhHHHHHHHHhhcCCEEEEEechhHhhcc-CC--c--------ccc---CCc---
Confidence                 688999999984 5632  345999999999999877652  1111111 00  0        111   244   


Q ss_pred             EEEecCCc---cCCCCCCCeeEEEEEecCCHHHHHHH----------------------------HHhhh-ccccCChHH
Q 009517          343 VSFQSVSK---GYYGECGKRGGYMEVTGFSAEVREQI----------------------------YKVAS-VNLCSNISG  390 (533)
Q Consensus       343 i~i~S~SK---~~~gl~G~riG~v~~~~~~~~~~~~l----------------------------~~~~~-~~~~~~~~~  390 (533)
                      |++++-.-   -+ |..|-..||+.+   .++++.++                            ++-+. +..|.+..-
T Consensus       265 IvvG~~QrfGvPm-gfGGPhag~fA~---~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNICTnQaL  340 (450)
T COG0403         265 IVVGSAQRFGVPM-GFGGPHAGYFAV---KDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNICTNQAL  340 (450)
T ss_pred             eEEecCcccCCCc-CCCCcceeeeeE---hHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhhhHHHHH
Confidence            66776544   22 223566788877   55554322                            11111 223333222


Q ss_pred             HHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CceEecCCceeEEecccCCCHHHHHHHHhcCC
Q 009517          391 QILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLE-GITCNKAEGAMYLFPRIQLPEKAIKAAEAEKT  469 (533)
Q Consensus       391 q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~  469 (533)
                      .+.++.+.       ..|. --+-++++.++..++..++.++|++.. |+.....  .||-.+-++++...         
T Consensus       341 lA~~As~y-------~~~h-Gp~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~~~--~fFdt~~v~~~~~~---------  401 (450)
T COG0403         341 LALAASMY-------AVYH-GPQGLKEIAERIHRLAAYLAAGLKEIGAGVELVFD--HFFDTFTVRVPEEV---------  401 (450)
T ss_pred             HHHHHHHH-------HHHh-ChHHHHHHHHHHHHHHHHHHHHHhhcCCceEeccc--cceeeEEEecchhH---------
Confidence            22111110       0111 124467888888889999999999762 4665544  44444445544211         


Q ss_pred             CChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHH
Q 009517          470 VPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTD  522 (533)
Q Consensus       470 ~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~  522 (533)
                        .... .+.....|+-+..   +  ...  .+=|++.  .+.++|+.+++.+..
T Consensus       402 --~~~l-~~~~~~~G~~L~~---~--~~~--~~~ia~tEt~t~~~i~~l~~~~~~  446 (450)
T COG0403         402 --AEAL-LAAAIAGGINLRR---V--DAD--TVLIALTETTTKEDIDALVAAFGG  446 (450)
T ss_pred             --HHHH-HHHHHhcCCceee---e--cCC--ceEEEeecccCHHHHHHHHHHHhh
Confidence              1111 1223345776663   1  111  4556664  566777777776654

>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=98.36  E-value=0.00037  Score=67.61  Aligned_cols=326  Identities=14%  Similarity=0.094  Sum_probs=181.8

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCc--ccHHHHHHH----HHHHHhhcCCCCCCC--CEEEcCChHHHHHHHHHHhcc
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQ--GIKGLRDTI----AAGIEARDGFPADPN--DIFLTDGASPAVHMMMQLLIR  212 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~--G~~~lr~ai----a~~~~~~~g~~~~~~--~i~~t~G~~~al~~~~~~l~~  212 (533)
                      ...|++++-..+.+...   .+|+-..  |-.++.+.+    .+.-.+.|+.+....  ||-.-+ ++.|...+..+++ 
T Consensus        53 s~aVmeAlGS~ltNKYS---EGyPG~RYYGGne~ID~iE~LCq~RALeaF~ldp~kWGVNVQp~S-GSPANfavYtall-  127 (477)
T KOG2467|consen   53 SRAVMEALGSCLTNKYS---EGYPGARYYGGNEYIDQIELLCQKRALEAFGLDPEKWGVNVQPYS-GSPANFAVYTALL-  127 (477)
T ss_pred             HHHHHHHHhHHhhcccc---cCCCcccccCcchHHHHHHHHHHHHHHHHhCCCHHHCceeeccCC-CCchhhHHHhhhc-
Confidence            47788888777766432   2333211  122333333    333334466443333  444444 4577888888888 


Q ss_pred             CCCCeEEEcC---CcCcchHHHHHHhCCe---------EEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCC
Q 009517          213 SENDGILCPI---PQYPLYSASIALHGGT---------LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPG  280 (533)
Q Consensus       213 ~~gd~Vlv~~---p~~~~~~~~~~~~g~~---------~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~  280 (533)
                      .|+++|.-.+   .++-.+-  ...-+.+         -.+|.+++. +.-+|.|.||+.....     ++|+||-    
T Consensus       128 ~Ph~RiMGLDLP~GGHLsHG--y~T~~kkISa~SiyFeSmPYkv~~~-TG~IDYD~Le~~A~~f-----rPk~iia----  195 (477)
T KOG2467|consen  128 KPHERIMGLDLPSGGHLSHG--YQTPTKKISATSIYFESMPYKVDPS-TGYIDYDKLEKTATLF-----RPKLIIA----  195 (477)
T ss_pred             CCCCeeeeccCCCCCccccc--cccCCceeeeeeeecccCceeeCCC-CCceehHHHHHHHHhc-----CCcEEEe----
Confidence            7999877433   3333221  1111111         123445544 4458999999988876     7888772    


Q ss_pred             CCCccCCCHHH-HHHHHHHHHHcCCEEEEcccc-ccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCC
Q 009517          281 NPTGQVLAEEN-QRAIVDFCKKEGLVLLADEVY-QENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGK  358 (533)
Q Consensus       281 NPtG~~~s~~~-l~~i~~l~~~~~~~lI~De~y-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~  358 (533)
                        .+..|++.. ..++.++|.+-|.++++|.++ ++++-.+..+  +.+.        +-|   |+..+..|++   -|-
T Consensus       196 --G~SaY~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vip--sPFe--------y~D---iVTTTTHKsL---RGP  257 (477)
T KOG2467|consen  196 --GTSAYSRLIDYARFRKIADKVGAYLMADMAHISGLVAAGVIP--SPFE--------YCD---IVTTTTHKSL---RGP  257 (477)
T ss_pred             --ccccchhhccHHHHHHHHHhcCceeehhhhhHHHHHhcccCC--Cccc--------ccc---eeeccccccc---cCC
Confidence              223455443 778888899999999999998 5666554322  2112        234   7788999987   487


Q ss_pred             eeEEEEEecC--------CHHH----HHHHHHh-h-hccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHH
Q 009517          359 RGGYMEVTGF--------SAEV----REQIYKV-A-SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLAR  424 (533)
Q Consensus       359 riG~v~~~~~--------~~~~----~~~l~~~-~-~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (533)
                      |.|.|...-.        .+++    -+.+.-. . ..-.+|.-....+++.+|....  ...       .+.-.++..+
T Consensus       258 Rg~mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNhtIaalAvALkQa~--tpe-------fk~Yq~qV~~  328 (477)
T KOG2467|consen  258 RGAMIFYRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHNHTIAALAVALKQAM--TPE-------FKEYQKQVLK  328 (477)
T ss_pred             cceeEEEeccCCcCCCCCCCcceechhhhhhhhccccccCCCCcchHHHHHHHHHhhC--CHH-------HHHHHHHHHH
Confidence            8777654210        0121    1222111 0 1223444444444444554322  122       2334455667


Q ss_pred             HHHHHHHHHhcCCCceEecCC-ceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCC----CCCC
Q 009517          425 RAKTLEDAFNSLEGITCNKAE-GAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ----VPGT  499 (533)
Q Consensus       425 ~~~~l~~~L~~~~g~~~~~~~-gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~----~~g~  499 (533)
                      +.+.|.+.|.+. |.+++... ....+.+++...          |.  +-..+++.|+.-+|.+.--..+|.    .++ 
T Consensus       329 Nakala~~l~~~-Gy~lvtgGTDnHlvLvDLr~~----------G~--dGarvE~vle~~~I~~NKNtvpGD~Sal~Pg-  394 (477)
T KOG2467|consen  329 NAKALASALISR-GYKLVTGGTDNHLVLVDLRPK----------GV--DGARVEKVLELCHIALNKNTVPGDKSALSPG-  394 (477)
T ss_pred             HHHHHHHHHHHc-CceEecCCccceEEEEecccc----------CC--chHHHHHHHHHhhhhhcCCcCCCCccccCCC-
Confidence            778888998888 88877543 333344455411          22  222355677777777654444432    233 


Q ss_pred             ceEEEEe-c-----CCcCcHHHHHHHHHHHHH
Q 009517          500 WHFRCTI-L-----PQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       500 ~~iRis~-~-----~~~e~i~~~~~~l~~~l~  525 (533)
                       .|||.. +     .-++++++..+-|.++++
T Consensus       395 -GiRiGtPAmTsRG~~e~df~~v~~fi~~av~  425 (477)
T KOG2467|consen  395 -GIRIGTPAMTSRGFGEEDFEKVADFIDRAVK  425 (477)
T ss_pred             -ceeccchhhcccCccHHHHHHHHHHHHHHHH
Confidence             799976 2     456778888877777665

>KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis]

Probab=98.02  E-value=0.00027  Score=65.54  Aligned_cols=238  Identities=14%  Similarity=0.124  Sum_probs=121.9

Q ss_pred             HHHHHHHHhhcCCCCCCCCEEE-cCChHHHHHHHHHHhcc-CCC-CeEEEcCCcCcchHHHHHHhCCeEEEEec-CCCCC
Q 009517          174 DTIAAGIEARDGFPADPNDIFL-TDGASPAVHMMMQLLIR-SEN-DGILCPIPQYPLYSASIALHGGTLVPYYL-DEATG  249 (533)
Q Consensus       174 ~aia~~~~~~~g~~~~~~~i~~-t~G~~~al~~~~~~l~~-~~g-d~Vlv~~p~~~~~~~~~~~~g~~~~~v~~-~~~~~  249 (533)
                      ..+++..-...|...-..-+++ ...++ .+.+.+..++. .|. ..|+.+.-.-..-....-.+|.+++.+.- .+.+.
T Consensus        60 ne~a~~~i~l~glhav~nc~vvpl~tgm-slslc~~s~r~krpkakyiiw~ridqks~~ksi~~agfepiiie~i~d~d~  138 (432)
T KOG3843|consen   60 NEFAKDAIHLAGLHAVANCFVVPLATGM-SLSLCFLSLRHKRPKAKYIIWLRIDQKSCFKSIIHAGFEPIIIENILDGDE  138 (432)
T ss_pred             HHHHHHHHHHhhhhhhhceeEEeccccc-cHHHHHHHHhhcCCcccEEEEEecchHHHHHHHHhcCCCceeeeccccchH
Confidence            3344433333454443333332 33332 34445555431 343 44554443333333344457887766542 22222


Q ss_pred             CCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHH
Q 009517          250 WGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKV  329 (533)
Q Consensus       250 ~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~  329 (533)
                      .--|++.+++.+++.     ....|+..+-....=..-+++.+++|+.+|..|++.-|+..+|.-   .......-+ ..
T Consensus       139 l~tdleav~~~iee~-----g~dcilci~sttscfapr~pd~leaiaaica~~diphivnnaygl---qsee~i~~i-aa  209 (432)
T KOG3843|consen  139 LITDLEAVEAIIEEL-----GEDCILCIHSTTSCFAPRSPDNLEAIAAICAAHDIPHIVNNAYGL---QSEECIHKI-AA  209 (432)
T ss_pred             HHHhHHHHHHHHHHh-----CCceEEEEeecccccCCCCCchHHHHHHHHHccCchhhhcccccc---chHHHHHHH-HH
Confidence            334889999988885     344443333332223345678899999999999999999999963   111111111 11


Q ss_pred             HhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhH
Q 009517          330 SRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESY  408 (533)
Q Consensus       330 ~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~  408 (533)
                      ..+.+.+  |   .+++|+-|+|.    .++|-.+....++..++.+.+... ..+..+  +...+..+|..+   ...|
T Consensus       210 ~~~~gri--d---a~vqsldknf~----vpvggaiia~fk~n~iq~iak~ypgrasa~p--s~dllitll~~g---qn~f  275 (432)
T KOG3843|consen  210 AAECGRI--D---AFVQSLDKNFM----VPVGGAIIAAFKDNFIQEIAKMYPGRASASP--SLDLLITLLSLG---QNAF  275 (432)
T ss_pred             HhhhccH--H---HHHHHhhhcce----eecchhHhhHhHHHHHHHHHHhCCCccccCc--cHHHHHHHHHhc---hhHH
Confidence            2222211  1   45899999983    445543332346667777766553 223333  333344444433   3445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009517          409 ESYCAERDGILSSLARRAKTLEDAFNS  435 (533)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~l~~~L~~  435 (533)
                      .+...+.++|.-.++.+...+.+...+
T Consensus       276 ~e~~~eqkemf~~l~~ki~~~ae~~~e  302 (432)
T KOG3843|consen  276 KELFGEQKEMFLKLRNKIIKFAEAIGE  302 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            444444555555444444445555444

>PRK12566 glycine dehydrogenase; Provisional

Probab=97.85  E-value=0.0052  Score=68.46  Aligned_cols=232  Identities=13%  Similarity=0.124  Sum_probs=128.5

Q ss_pred             CCeEEEcCCcCcchHHHHHH----hCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHH
Q 009517          215 NDGILCPIPQYPLYSASIAL----HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE  290 (533)
Q Consensus       215 gd~Vlv~~p~~~~~~~~~~~----~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~  290 (533)
                      ..+|+++.-.++.+...++.    .|.+++.             +++++.+..      ++.+|++.+|+. .|.+.   
T Consensus       168 ~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~-------------~~~~~~~~~------~~~~v~vq~P~~-~G~i~---  224 (954)
T PRK12566        168 SNRFFVDEHCHPQTLSVLRTRAEGFGFELVV-------------DAVDNLAAH------AVFGALLQYPDT-HGEIR---  224 (954)
T ss_pred             CCEEEECCCCCHHHHHHHHHhhhcCCcEEEE-------------cchhhcCCC------CEEEEEEECCCC-ceEEc---
Confidence            46899999999887765543    4555543             233333322      688899999985 68874   


Q ss_pred             HHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEe---cCCccCCCCCCCeeEEEEEec
Q 009517          291 NQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQ---SVSKGYYGECGKRGGYMEVTG  367 (533)
Q Consensus       291 ~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~---S~SK~~~gl~G~riG~v~~~~  367 (533)
                      ++++|.++++++|.++|+- +. -+..+.-.   +.    -++   ..|   |+++   +|+=-+ |..|=-.||+.+  
T Consensus       225 d~~~i~~~~h~~gal~~~~-~d-~laL~ll~---~P----ge~---GAD---I~vG~~Q~fGvp~-~~GGP~ag~~a~--  286 (954)
T PRK12566        225 DLRPLIDQLHGQQALACVA-AD-LLSLLVLT---PP----GEL---GAD---VVLGSTQRFGVPM-GYGGPHAAYFAC--  286 (954)
T ss_pred             cHHHHHHHHHHcCCEEEEE-eC-HHHHhCCC---Ch----hhc---CCc---EEeeCCCcCCCCC-CCCCCCeeeeee--
Confidence            4999999999999886632 21 11121111   11    112   234   5454   333333 223555788877  


Q ss_pred             CCHHHHHHHH----------------------------Hhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHH--HHHHH
Q 009517          368 FSAEVREQIY----------------------------KVAS-VNLCSNISGQILASLVMSPPKVGDESYESY--CAERD  416 (533)
Q Consensus       368 ~~~~~~~~l~----------------------------~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~--~~~~~  416 (533)
                       .++++.++-                            +-+. +..|.+..-.+.++.+          |..+  -+-++
T Consensus       287 -~~~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtSNICT~qaL~A~~a~~----------Y~~~~Gp~Gl~  355 (954)
T PRK12566        287 -RDDYKRAMPGRIIGVSRDARGNTALRMALQTREQHIRREKANSNICTAQVLLANIAGF----------YAVYHGPEGLK  355 (954)
T ss_pred             -hHHHHhhCCCCccceeecCCCCeeeehhhhHHHHHhhhccccchhhHHHHHHHHHHHH----------HHHHhChHHHH
Confidence             555554331                            1111 1123322222222211          1111  13366


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCC
Q 009517          417 GILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQV  496 (533)
Q Consensus       417 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~  496 (533)
                      ++.++...+..++.+.|.+. |++....  .||=.+.+...           . ...... ....+.||-++-       
T Consensus       356 ~ia~~~~~~a~~l~~~l~~~-g~~~~~~--~fF~~~~v~~~-----------~-~~~~~~-~~a~~~~~n~r~-------  412 (954)
T PRK12566        356 RIAQRVHRLTAILAAGLEAK-GIKRLNR--HFFDTLTLEVG-----------G-AQAAII-ESAEAARINLRI-------  412 (954)
T ss_pred             HHHHHHHHHHHHHHHHHHhc-CCccccC--CccceEEEEcc-----------C-CHHHHH-HHHHHCCCeeEE-------
Confidence            77777888888999999985 8776433  44433333321           0 122223 445567888773       


Q ss_pred             CCCceEEEEec--CCcCcHHHHHHHHH
Q 009517          497 PGTWHFRCTIL--PQEDKIPAIVTRLT  521 (533)
Q Consensus       497 ~g~~~iRis~~--~~~e~i~~~~~~l~  521 (533)
                      -+.+.+.||+.  .+.++++.+++.+.
T Consensus       413 ~~~~~~~~s~de~~~~~~~~~~~~~f~  439 (954)
T PRK12566        413 LGRGRLGVSLDETCDEATVARLFDIFL  439 (954)
T ss_pred             eCCCeEEEEeCCCCCHHHHHHHHHHhc
Confidence            12237888985  77788888888874

>KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism]

Probab=97.30  E-value=0.056  Score=51.67  Aligned_cols=132  Identities=17%  Similarity=0.124  Sum_probs=92.5

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCC---CeEEEcCCcCcc----hHHHHHHhCCeEE-
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN---DGILCPIPQYPL----YSASIALHGGTLV-  240 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g---d~Vlv~~p~~~~----~~~~~~~~g~~~~-  240 (533)
                      ......-++..++      ...++|.+.++-+--+..++..+. +|.   -+|++..-.|+.    ....++.+|..+. 
T Consensus       113 De~il~l~~~iVG------A~e~EvavmNsLTvNlh~Ll~sFy-KPTekR~KILlE~kaFPSDhYAiesQ~~lhG~~~e~  185 (465)
T KOG3846|consen  113 DEPILPLLAPIVG------AQENEVAVMNSLTVNLHSLLISFY-KPTEKRFKILLEKKAFPSDHYAIESQCKLHGISPEN  185 (465)
T ss_pred             chhhhhhhhhhcc------CCchhhhhHhhhhhHHHHHHHHhc-CCcchhhhhhhccCCCCchHHHHHhhhhhcCCChHH
Confidence            3444444555543      567789999999999999999987 564   358888777765    3456677787632 


Q ss_pred             ---EEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEcccccc
Q 009517          241 ---PYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE  314 (533)
Q Consensus       241 ---~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~  314 (533)
                         .+.-.+. .-.+..+++.+.|+..   |.....|++.-.+.-||..++   +.+|...-+..|+++=+|-+++-
T Consensus       186 sm~~iePREG-EetlRteDILd~IEkn---gDeiA~v~fSGvqyYTGQ~Fd---i~aIT~Agq~kgc~VGfDLAHAv  255 (465)
T KOG3846|consen  186 SMIQIEPREG-EETLRTEDILDTIEKN---GDEIALVCFSGVQYYTGQYFD---IGAITFAGQFKGCLVGFDLAHAV  255 (465)
T ss_pred             heEEeccccc-ccchhHHHHHHHHHhc---CCeEEEEEeecceeecccccc---hhhhhhcccCCCcEechhhhhhh
Confidence               2322221 1245678888888764   556777777788999999998   88887666667999999988763

>KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism]

Probab=96.98  E-value=0.053  Score=51.29  Aligned_cols=316  Identities=14%  Similarity=0.109  Sum_probs=158.9

Q ss_pred             CHHHHHHHHHHHhcCCCCC--ccc--cCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc-CCC
Q 009517          141 SADSIERAWQILDQIPGRA--TGA--YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-SEN  215 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~--~~~--Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~g  215 (533)
                      |.+|+..+.+-+-+..+.+  ..+  .-+.+ ...+.+.....+.+.++++-+.+-+++-.|++.-...+...+.. +.|
T Consensus        19 p~~VL~e~qkdl~n~~g~GisV~EmSHRsk~-f~kii~~tes~lreLlniPdn~~vlf~QGGGt~qFaAv~lNL~glK~g   97 (370)
T KOG2790|consen   19 PESVLLEAQKDLLNFNGSGISVMEMSHRSKD-FAKIINDTESLLRELLNIPDNYKVLFLQGGGTGQFAAVPLNLIGLKHG   97 (370)
T ss_pred             CHHHHHHHHHHhhccCCCcceEEEecccchh-HHHHHHHHHHHHHHHHcCCCceeEEEEeCCCcccccccchhhhccccC
Confidence            7888888877665543211  111  11222 34445555555555566554444456666777766666555542 233


Q ss_pred             ---CeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCC--CCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHH
Q 009517          216 ---DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWG--LETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE  290 (533)
Q Consensus       216 ---d~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~--ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~  290 (533)
                         |.|+.-..+--.+..+-+......+..+..+. +|+  +|.+.++..        ++.+.+++|.-..--|+-++. 
T Consensus        98 ~~AdYiVTGsWS~KA~~EAkk~~~~~~V~~~~k~y-~ygkvPd~~~w~~~--------~da~yvyyCaNETVHGVEf~~-  167 (370)
T KOG2790|consen   98 RCADYVVTGSWSAKAAEEAKKYGTPNIVIPKLKSY-TYGKVPDPSTWELN--------PDASYVYYCANETVHGVEFDF-  167 (370)
T ss_pred             CccceEEeccccHHHHHHHHhhCCceEEecccccc-ccCcCCChhhcccC--------CCccEEEEecCceeeceecCC-
Confidence               55664443333455444443444444444432 232  455555442        245567776433333554331 


Q ss_pred             HHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCH
Q 009517          291 NQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSA  370 (533)
Q Consensus       291 ~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~  370 (533)
                          +- +-.-++.+++.|-...-+..    | .++..          .  -+++.+..|++ |++|+-+=.+     .+
T Consensus       168 ----~P-~~~~~~~vlVaDmSSnflSr----p-vDvsk----------~--gvi~aGAQKN~-G~aG~Tvviv-----r~  219 (370)
T KOG2790|consen  168 ----IP-VNDPKGAVLVADMSSNFLSR----P-VDVSK----------F--GVIFAGAQKNV-GPAGVTVVIV-----RK  219 (370)
T ss_pred             ----CC-CCCCCCceEEEecccchhcC----C-ccchh----------c--ceEEecccccc-CccccEEEEE-----eh
Confidence                10 12335788888865543221    1 11111          1  25577889999 8888755333     66


Q ss_pred             HHHHHHHHhh-------------hccccCChHHHHHHHHHcCCCCCCChhHHHHHHH---HHHHHHHHHHHHHHHHHHHh
Q 009517          371 EVREQIYKVA-------------SVNLCSNISGQILASLVMSPPKVGDESYESYCAE---RDGILSSLARRAKTLEDAFN  434 (533)
Q Consensus       371 ~~~~~l~~~~-------------~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~L~  434 (533)
                      +++.......             +.+-.++.++.++.-..++           |+.+   +..+.+.-.++.+.+++.+.
T Consensus       220 dllg~~~~~tP~v~dyk~~~~NnSlyNTpP~f~iy~~~Lv~~-----------~il~~GGl~a~e~~n~~KskllYd~iD  288 (370)
T KOG2790|consen  220 DLLGNALDITPSVLDYKIMDKNNSLYNTPPCFGIYVMGLVFE-----------WILEKGGLAAMEKLNQEKSKLLYDAID  288 (370)
T ss_pred             hhhcccccCCccccceeeeccccccccCCCeeeeeehhhHHH-----------HHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            6664433221             1222344455454443332           2221   45556666777889999998


Q ss_pred             cCCCceEec--C--CceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEe--cC
Q 009517          435 SLEGITCNK--A--EGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTI--LP  508 (533)
Q Consensus       435 ~~~g~~~~~--~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~--~~  508 (533)
                      +-.|+...+  |  +.-|.+..++. +++           -+.+|..+..+++=|.+. |.     ..-+.||-|+  ++
T Consensus       289 ~s~gfy~cpVe~~~RS~MNV~Fri~-~d~-----------Le~eFLkeA~~~~mv~LK-Gh-----RSVGGiRASlYNAi  350 (370)
T KOG2790|consen  289 NSNGFYRCPVEPSVRSRMNVPFRIE-KDE-----------LEAEFLKEAAKEHMVQLK-GH-----RSVGGIRASLYNAI  350 (370)
T ss_pred             hcCCeEEcccchhhhhhcccceeec-chH-----------HHHHHHHHHHHhhhhccc-cc-----cccccchhhhhccc
Confidence            765654332  2  23344443333 111           245566666655444443 21     1122689998  47


Q ss_pred             CcCcHHHHHHHHHHHH
Q 009517          509 QEDKIPAIVTRLTDFH  524 (533)
Q Consensus       509 ~~e~i~~~~~~l~~~l  524 (533)
                      +-++.+++++-|+++.
T Consensus       351 sv~~~q~L~~~m~~F~  366 (370)
T KOG2790|consen  351 SVEEVQKLAAFMKEFQ  366 (370)
T ss_pred             cHHHHHHHHHHHHHHH
Confidence            7777555554444443

>PLN02672 methionine S-methyltransferase

Probab=96.91  E-value=0.028  Score=64.16  Aligned_cols=219  Identities=11%  Similarity=0.053  Sum_probs=134.5

Q ss_pred             HHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCc-
Q 009517          146 ERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQ-  224 (533)
Q Consensus       146 ~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~-  224 (533)
                      ..+...++..   +..-|.++.|...+|..||.|+...+++++++++|++.++-..|++.+++.+.  |-=.++-..-+ 
T Consensus       408 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  482 (1082)
T PLN02672        408 AYLASALKGL---SYFPCEPPAGSKRFRNLIAGFMRIYHHIPLTPDNVVVFPSRAVAIENALRLFS--PRLAIVDEHLTR  482 (1082)
T ss_pred             HHHHHHHccC---CCCCCCCCccchHHHHHHHHHHHHhcCCcCCccceEEeccHHHHHHHHHHhhC--hHHHhhhhhhhc
Confidence            3344445442   46778999999999999999999999999999999999999999999999874  31111101111 


Q ss_pred             Cc--chHHHHHHhC--------CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHH
Q 009517          225 YP--LYSASIALHG--------GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRA  294 (533)
Q Consensus       225 ~~--~~~~~~~~~g--------~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~  294 (533)
                      |-  -|...+...|        .++..+....      ..+.+.+.|++.     ++++|+..-.+   +-..+-...+.
T Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-----~~~~~~~~~~~---~~~~~~~~~~~  548 (1082)
T PLN02672        483 WLPKKWLTSLAIENATSDSKSDDVITVIEAPR------QSDLVIELIKKL-----KPQVVVTGMAD---FEMRTSTAFEH  548 (1082)
T ss_pred             cCCHHHHhHhhhhcccccCccCCeEEEEeCCC------cchHHHHHHHhC-----CCeEEEEeccc---hhhhhHHHHHH
Confidence            11  1233333333        1222221110      124677777775     78888755433   22345566899


Q ss_pred             HHHHHHHcCCEEEEcccc-ccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHH
Q 009517          295 IVDFCKKEGLVLLADEVY-QENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVR  373 (533)
Q Consensus       295 i~~l~~~~~~~lI~De~y-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~  373 (533)
                      |.+.+++.|.+++.|..- -++.  +......+..++..-.  .|. +..++.++-|+- --+.+-+.+++.  .++.+.
T Consensus       549 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~  620 (1082)
T PLN02672        549 LLNVTAEIGARLFLDISDHLELS--SLPGSNGVLKYLAGHP--LPS-HAAIICGLVKNQ-VYSDLEVAFVIS--ENEAVL  620 (1082)
T ss_pred             HHHHHHhhCcEEEEehhhheeec--cCCCcccHHHHhcCCC--CCc-chhHhhhhhhcc-ccccceEEEEec--CcHHHH
Confidence            999999999999999763 3322  2111122223322110  122 345577888875 457899999986  577777


Q ss_pred             HHHHHhhh-ccccCChHHH
Q 009517          374 EQIYKVAS-VNLCSNISGQ  391 (533)
Q Consensus       374 ~~l~~~~~-~~~~~~~~~q  391 (533)
                      ..+.+... .......++|
T Consensus       621 ~~~~~~~~~~~~~~~~~~~  639 (1082)
T PLN02672        621 KALSKTGEVLEGRTAIISQ  639 (1082)
T ss_pred             HHHHHHHHhhccchHHHHH
Confidence            77766543 3334444444

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=96.18  E-value=1.5  Score=46.45  Aligned_cols=141  Identities=21%  Similarity=0.281  Sum_probs=100.3

Q ss_pred             ccccCC---CcccHHHHHHHHHHHHhhcCCCCCCCCEEEcC-ChHHHHHH---HHHHhccCCC----CeEEEcCCcCcch
Q 009517          160 TGAYSH---SQGIKGLRDTIAAGIEARDGFPADPNDIFLTD-GASPAVHM---MMQLLIRSEN----DGILCPIPQYPLY  228 (533)
Q Consensus       160 ~~~Y~~---~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~-G~~~al~~---~~~~l~~~~g----d~Vlv~~p~~~~~  228 (533)
                      .+-|.|   .+|+.++-+.+.+++...-|    .|++.+-+ ++.++-+.   ++++.....|    ...++|.-.+...
T Consensus       568 IHPF~P~eQaqGY~~lf~~Le~~Lc~iTG----~D~~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTN  643 (1001)
T KOG2040|consen  568 IHPFAPVEQAQGYQQLFTELEKDLCEITG----FDSFSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTN  643 (1001)
T ss_pred             CCCCCchHHHhhHHHHHHHHHHHhheeec----ccceeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCC
Confidence            455665   46888888888888876533    55665543 33333222   3333321233    2467788888888


Q ss_pred             HHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEE
Q 009517          229 SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLA  308 (533)
Q Consensus       229 ~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~  308 (533)
                      ...+..+|.++++|.++..+  .+|..+|++..+++..   +..++.++.|+. -|+.  ++.+++++++.++||--|..
T Consensus       644 PASA~MagmkvvpV~~~~~G--~id~~dLk~kaekh~~---~Laa~MvTYPST-~Gvf--E~~i~d~cd~iHehGGQVYl  715 (1001)
T KOG2040|consen  644 PASAAMAGMKVVPVGCDANG--NIDMVDLKAKAEKHKD---NLAALMVTYPST-HGVF--EEGIDDICDIIHEHGGQVYL  715 (1001)
T ss_pred             hhhHHhcCCEEEEeeccCCC--CccHHHHHHHHHHhhh---hhheeEEecccc-cccc--cccHHHHHHHHHhcCCEEEe
Confidence            88899999999999988654  7899999998877633   678899999974 2433  35599999999999999999


Q ss_pred             cccc
Q 009517          309 DEVY  312 (533)
Q Consensus       309 De~y  312 (533)
                      |.+-
T Consensus       716 DGAN  719 (1001)
T KOG2040|consen  716 DGAN  719 (1001)
T ss_pred             cCCC
Confidence            9764

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=88.90  E-value=37  Score=36.59  Aligned_cols=87  Identities=16%  Similarity=0.251  Sum_probs=52.0

Q ss_pred             hHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHh----CCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEE
Q 009517          199 ASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALH----GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRAL  274 (533)
Q Consensus       199 ~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~----g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~i  274 (533)
                      +.||+.++.+.   ..+.+.++..-+|+.....++-.    |.++..          .|+++....       .+++..+
T Consensus       192 aaEAm~l~~~~---~krkk~vvd~~~hpqtlsV~~TRa~~~~i~v~~----------~~~~~~~~s-------~~~v~gv  251 (1001)
T KOG2040|consen  192 AAEAMALCNRI---NKRKKFVVDSNCHPQTLSVVKTRAKGFGIKVVV----------SDIKEADYS-------SKDVSGV  251 (1001)
T ss_pred             HHHHHHHHHhh---cccceEEecCCCCcchhhhhhccccccceeEEe----------cCHHHhhcc-------ccceeEE
Confidence            33444444433   45667999999998776655431    222111          122222221       1257788


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEc
Q 009517          275 VVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLAD  309 (533)
Q Consensus       275 il~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~D  309 (533)
                      ++..|.. -|.+.+   +.++++++++.+.++++-
T Consensus       252 lvQYP~t-~G~i~d---~~el~~~a~~~~s~vv~a  282 (1001)
T KOG2040|consen  252 LVQYPDT-EGSVLD---FDELVELAHANGSLVVMA  282 (1001)
T ss_pred             EEEcCCC-CCcccC---HHHHHHHhhccCceEEEe
Confidence            8888875 477777   888888999988776653

>KOG1465 consensus Translation initiation factor 2B, beta subunit (eIF-2Bbeta/GCD7) [Translation, ribosomal structure and biogenesis]

Probab=87.86  E-value=16  Score=35.37  Aligned_cols=107  Identities=12%  Similarity=0.114  Sum_probs=70.3

Q ss_pred             CCCCCEEEcCChHHHHHHHHHHhccCCCC--eEEEcC--CcCcchHHHHHH--hCCeEEEEecCCCCCCCCCHHHHHHHH
Q 009517          188 ADPNDIFLTDGASPAVHMMMQLLIRSEND--GILCPI--PQYPLYSASIAL--HGGTLVPYYLDEATGWGLETSEVKKQL  261 (533)
Q Consensus       188 ~~~~~i~~t~G~~~al~~~~~~l~~~~gd--~Vlv~~--p~~~~~~~~~~~--~g~~~~~v~~~~~~~~~ld~~~l~~~i  261 (533)
                      +..++|++|.|.+.-+..++..+. +.|.  .|++.+  |.+.++..+...  +|++...++          ..++-+.+
T Consensus       160 ihsnEviLT~g~SrTV~~FL~~A~-kk~Rkf~viVaE~~p~~qgH~~Ak~la~~giettVI~----------daaVfA~M  228 (353)
T KOG1465|consen  160 IHSNEVILTLGSSRTVENFLKHAA-KKGRKFRVIVAEGAPNNQGHELAKPLAQAGIETTVIP----------DAAVFAMM  228 (353)
T ss_pred             hccCceEEecCccHHHHHHHHHHH-hccCceEEEEeecCCcccchHhhHHHHHcCCeeEEec----------cHHHHHHh
Confidence            345789999999999999999887 4543  355544  666665554444  466655554          23444555


Q ss_pred             HHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccc
Q 009517          262 EAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEV  311 (533)
Q Consensus       262 ~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~  311 (533)
                      .+      --|+|+-.+.--+-|-+....-...++..|++|-+.+|+=.-
T Consensus       229 sr------VnKVIigt~avl~NGgl~~~~G~~~vAlaAk~h~vPv~VlAp  272 (353)
T KOG1465|consen  229 SR------VNKVIIGTHAVLANGGLRAPSGVHTVALAAKHHSVPVIVLAP  272 (353)
T ss_pred             hh------cceEEEEeeeEecCCCeeccchHHHHHHHHHhcCCcEEEecc
Confidence            54      245666566544445566666778888889999888776443

>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]

Probab=84.70  E-value=11  Score=34.96  Aligned_cols=100  Identities=23%  Similarity=0.324  Sum_probs=70.5

Q ss_pred             EEEcCChHHHHHHHHHHhccCCCCeEE-----EcC-C-cC----cch---HHHHHHhCCeEEEEecCCCCCCCCCHHHHH
Q 009517          193 IFLTDGASPAVHMMMQLLIRSENDGIL-----CPI-P-QY----PLY---SASIALHGGTLVPYYLDEATGWGLETSEVK  258 (533)
Q Consensus       193 i~~t~G~~~al~~~~~~l~~~~gd~Vl-----v~~-p-~~----~~~---~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~  258 (533)
                      +.+-+||.....++..++.  .|..|.     .|. + +|    ++.   ...++..|..++.......  ..-..++|.
T Consensus         4 ~aL~SGGKDS~~Al~~a~~--~G~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g~--~e~eve~L~   79 (223)
T COG2102           4 IALYSGGKDSFYALYLALE--EGHEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDTSGE--EEREVEELK   79 (223)
T ss_pred             EEEEecCcHHHHHHHHHHH--cCCeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEecCcc--chhhHHHHH
Confidence            6778999999888887773  453321     121 2 12    121   2345667888888777642  234688899


Q ss_pred             HHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEE
Q 009517          259 KQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLA  308 (533)
Q Consensus       259 ~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~  308 (533)
                      ++++..     +..+|+       +|.+++..+...+-.+|++-|+.++.
T Consensus        80 ~~l~~l-----~~d~iv-------~GaI~s~yqk~rve~lc~~lGl~~~~  117 (223)
T COG2102          80 EALRRL-----KVDGIV-------AGAIASEYQKERVERLCEELGLKVYA  117 (223)
T ss_pred             HHHHhC-----cccEEE-------EchhhhHHHHHHHHHHHHHhCCEEee
Confidence            999875     566787       89999999999999999999987654

>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]

Probab=82.00  E-value=26  Score=34.51  Aligned_cols=59  Identities=19%  Similarity=0.300  Sum_probs=37.7

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEcc
Q 009517          249 GWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADE  310 (533)
Q Consensus       249 ~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De  310 (533)
                      +..++.++++..++...+.-.+...|++ +-+=|-|  ++.+...+|+++|++.|..+++|.
T Consensus       108 Gp~is~~~~~~~l~~~~~~l~~~d~Vvl-sGSlP~g--~~~d~y~~li~~~~~~g~~vilD~  166 (310)
T COG1105         108 GPEISEAELEQFLEQLKALLESDDIVVL-SGSLPPG--VPPDAYAELIRILRQQGAKVILDT  166 (310)
T ss_pred             CCCCCHHHHHHHHHHHHHhcccCCEEEE-eCCCCCC--CCHHHHHHHHHHHHhcCCeEEEEC
Confidence            3456666666655554321112333443 4444444  457889999999999999999994

>PRK08265 short chain dehydrogenase; Provisional

Probab=81.72  E-value=21  Score=34.14  Aligned_cols=100  Identities=14%  Similarity=0.020  Sum_probs=53.8

Q ss_pred             CCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCC
Q 009517          191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT  270 (533)
Q Consensus       191 ~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~  270 (533)
                      ..+++|.|+...-..+.+.+. +.|..|++..-.-..........+.++..++.|-.     |.+.+++.++...+.-.+
T Consensus         7 k~vlItGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~-----~~~~~~~~~~~~~~~~g~   80 (261)
T PRK08265          7 KVAIVTGGATLIGAAVARALV-AAGARVAIVDIDADNGAAVAASLGERARFIATDIT-----DDAAIERAVATVVARFGR   80 (261)
T ss_pred             CEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCC-----CHHHHHHHHHHHHHHhCC
Confidence            456666655555555566666 67877777654333333444445666667766533     677777777654332224


Q ss_pred             eeEEEEeCC-CCCCccCCCHHHHHHHH
Q 009517          271 VRALVVINP-GNPTGQVLAEENQRAIV  296 (533)
Q Consensus       271 ~~~iil~~p-~NPtG~~~s~~~l~~i~  296 (533)
                      ...++.+.. ..+.+...+.+++++..
T Consensus        81 id~lv~~ag~~~~~~~~~~~~~~~~~~  107 (261)
T PRK08265         81 VDILVNLACTYLDDGLASSRADWLAAL  107 (261)
T ss_pred             CCEEEECCCCCCCCcCcCCHHHHHHHH
Confidence            555543321 22233445555555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	533
3tcm_A	500	Crystal Structure Of Alanine Aminotransferase From		0.0
3ihj_A	498	Human Alanine Aminotransferase 2 In Complex With Pl		1e-121
1xi9_A	406	Alanine Aminotransferase From Pyrococcus Furiosus P		2e-30
1dju_A	388	Crystal Structure Of Aromatic Aminotransferase From		5e-19
1gde_A	389	Crystal Structure Of Pyrococcus Protein A-1 E-form		6e-19
1j32_A	388	Aspartate Aminotransferase From Phormidium Lapideum		8e-17
1iax_A	428	Crystal Structure Of Acc Synthase Complexed With Pl		8e-17
1o4s_A	389	Crystal Structure Of Aspartate Aminotransferase (Tm		4e-14
2gb3_A	409	Crystal Structure Of Aspartate Aminotransferase (Tm		1e-13
1x0m_A	403	A Human Kynurenine Aminotransferase Ii Homologue Fr		6e-13
3aov_A	448	Crystal Structure Of Pyrococcus Horikoshii Kynureni		7e-13
3dyd_A	427	Human Tyrosine Aminotransferase Length = 427		2e-12
1v2d_A	381	Crystal Structure Of T.Th Hb8 Glutamine Aminotransf		8e-12
3pdx_A	402	Crystal Structural Of Mouse Tyrosine Aminotransfera		1e-11
1u08_A	386	Crystal Structure And Reactivity Of Ybdl From Esche		3e-11
1ynu_A	473	Crystal Structure Of Apple Acc Synthase In Complex		9e-11
1b8g_A	429	1-aminocyclopropane-1-carboxylate Synthase Length =		1e-10
1m7y_A	435	Crystal Structure Of Apple Acc Synthase In Complex		1e-10
3piu_A	410	High-Resolution Structure Of Native Malus Domestica		1e-10
2z61_A	370	Crystal Structure Of Mj0684 From Methanococcus Jann		1e-09
1gc3_A	385	Thermus Thermophilus Aspartate Aminotransferase Tet		6e-09
5bj3_A	385	Thermus Thermophilus Aspartate Aminotransferase Tet		6e-09
1gck_A	385	Thermus Thermophilus Aspartate Aminotransferase Dou		8e-09
1b5o_A	385	Thermus Thermophilus Aspartate Aminotransferase Sin		1e-08
3b1c_A	392	Crystal Structure Of Betac-S Lyase From Streptococc		1e-08
1bkg_A	385	Aspartate Aminotransferase From Thermus Thermophilu		3e-08
2x5d_A	412	Crystal Structure Of A Probable Aminotransferase Fr		4e-08
1bjw_A	382	Aspartate Aminotransferase From Thermus Thermophilu		4e-08
3nra_A	407	Crystal Structure Of An Aspartate Aminotransferase		2e-07
3l8a_A	421	Crystal Structure Of Metc From Streptococcus Mutans		3e-07
1wst_A	417	Crystal Structure Of Multiple Substrate Aminotransf		4e-07
3ele_A	398	Crystal Structure Of Amino Transferase (rer07020700		4e-07
1d2f_A	390	X-Ray Structure Of Maly From Escherichia Coli: A Py		1e-06
3jtx_A	396	Crystal Structure Of Aminotransferase (np_283882.1)		2e-06
3b46_A	447	Crystal Structure Of Bna3p, A Putative Kynurenine A		3e-06
3e2f_A	410	Crystal Structure Of Mouse Kynurenine Aminotransfer		4e-06
1w7n_A	422	Crystal Structure Of Human Kynurenine Aminotransfer		4e-06
3e2z_B	410	Crystal Structure Of Mouse Kynurenine Aminotransfer		4e-06
3fvs_A	422	Human Kynurenine Aminotransferase I In Complex With		4e-06
1w7l_A	422	Crystal Structure Of Human Kynurenine Aminotransfer		4e-06
3h14_A	391	Crystal Structure Of A Putative Aminotransferase Fr		7e-06
1gew_A	356	Crystal Structure Of Histidinol-Phosphate Aminotran		7e-06
4dgt_A	391	Crystal Structure Of Plp-Bound Putative Aminotransf		9e-06
1fg3_A	356	Crystal Structure Of L-Histidinol Phosphate Aminotr		1e-05
1bw0_A	416	Crystal Structure Of Tyrosine Aminotransferase From		2e-05
3f6t_A	533	Crystal Structure Of Aspartate Aminotransferase (E.		5e-05
1yiy_A	429	Aedes Aegypti Kynurenine Aminotransferase Length =		8e-05
1yiz_A	429	Aedes Aegypti Kynurenine Aminotrasferase Length = 4		9e-05
3t32_B	383	Crystal Structure Of A Putative C-S Lyase From Baci		1e-04
1vp4_A	425	Crystal Structure Of A Putative Aminotransferase (T		2e-04
4fl0_A	456	Crystal Structure Of Ald1 From Arabidopsis Thaliana		2e-04
3qgu_A	449	L,L-Diaminopimelate Aminotransferase From Chalmydom		3e-04
1lkc_A	364	Crystal Structure Of L-Threonine-O-3-Phosphate Deca		3e-04
2o0r_A	411	The Three-Dimensional Structure Of N-Succinyldiamin		3e-04
2egy_A	397	Crystal Structure Of Lysn, Alpha-Aminoadipate Amino		3e-04
3dzz_A	391	Crystal Structure Of A Putative Plp-Dependent Amino		3e-04
3ftb_A	361	The Crystal Structure Of The Histidinol-Phosphate A		3e-04
3eia_A	432	Crystal Structure Of K270q Variant Of Ll-Diaminopim		6e-04
3ei8_A	432	Crystal Structure Of K270n Variant Of Ll-Diaminopim		6e-04
2z1z_A	432	Crystal Structure Of Ll-diaminopimelate Aminotransf		6e-04

>pdb|3TCM|A Chain A, Crystal Structure Of Alanine Aminotransferase From Hordeum Vulgare Length = 500

Iteration: 1
 Score =  784 bits (2025), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/476 (77%), Positives = 414/476 (86%)
Query: 58  VDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITF 117
           VD+LNPKVLKCEYAVRGEIV  AQRLQ++L+T PGS  FDEILYCNIGNPQSLGQQP+TF
Sbjct: 25  VDNLNPKVLKCEYAVRGEIVIHAQRLQEQLKTQPGSLPFDEILYCNIGNPQSLGQQPVTF 84
Query: 118 FREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA 177
           FREVLALCDHP +L R E + LFSADSI RA QIL  IPGRATGAYSHSQGI GLRD IA
Sbjct: 85  FREVLALCDHPDLLQREEIKTLFSADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIA 144
Query: 178 AGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGG 237
           +GI +RDGFPA+ +DIFLTDGASP VH+MMQLLIR+E DGIL PIPQYPLYSASIALHGG
Sbjct: 145 SGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYSASIALHGG 204
Query: 238 TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD 297
            LVPYYL+E+TGWGLETS+VKKQLE A+++GI VRALVVINPGNPTGQVLAEENQ  IV 
Sbjct: 205 ALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVK 264
Query: 298 FCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG 357
           FCK EGLVLLADEVYQEN+YV  KKFHSFKK+ RS+GYGE+D+ LVS+QSVSKGYYGECG
Sbjct: 265 FCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECG 324
Query: 358 KRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDG 417
           KRGGY E+TGFSA VREQIYK+ASVNLCSNI+GQILASLVM+PPK  DESY SY AE+DG
Sbjct: 325 KRGGYFEITGFSAPVREQIYKIASVNLCSNITGQILASLVMNPPKASDESYASYKAEKDG 384
Query: 418 ILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXXTVPDAFYCR 477
           IL+SLARRAK LE AFN LEGITCN+AEGAMY+FP+I LP             PDAFY  
Sbjct: 385 ILASLARRAKALEHAFNKLEGITCNEAEGAMYVFPQICLPQKAIEAAKAANKAPDAFYAL 444
Query: 478 RLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKFRN 533
           RLL +TGIV+VPGSGFGQVPGTWHFRCTILPQEDKIPA+++R T FH+ FM ++R+
Sbjct: 445 RLLESTGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAVISRFTVFHEAFMSEYRD 500

>pdb|3IHJ|A Chain A, Human Alanine Aminotransferase 2 In Complex With Plp Length = 498

Iteration: 1
 Score =  431 bits (1109), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 219/479 (45%), Positives = 306/479 (63%), Gaps = 11/479 (2%)
Query: 58  VDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITF 117
           ++S+NP+V   EYAVRG IV  A  ++ ELQ       F E++  NIG+ Q++GQQPITF
Sbjct: 25  LESMNPQVKAVEYAVRGPIVLKAGEIELELQRGI-KKPFTEVIRANIGDAQAMGQQPITF 83
Query: 118 FREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA 177
            R+V+ALC +P++LD       F  D+ +RA +IL    G + G+YS SQG+  +R+ +A
Sbjct: 84  LRQVMALCTYPNLLDSPS----FPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVA 139
Query: 178 AGIEARDG-FPADPNDIFLTDGASPAVHMMMQLLIR---SENDGILCPIPQYPLYSASIA 233
           A I  RDG  PADP++I+LT GAS  +  ++++L+        G++ PIPQYPLYSA I+
Sbjct: 140 AYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSAVIS 199
Query: 234 LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQR 293
                 V YYLDE   W L  +E+++ ++ AK      + L +INPGNPTGQV + +   
Sbjct: 200 ELDAIQVNYYLDEENCWALNVNELRRAVQEAKDH-CDPKVLCIINPGNPTGQVQSRKCIE 258
Query: 294 AIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG-YGEKDISLVSFQSVSKGY 352
            ++ F  +E L LLADEVYQ+NVY P+ +FHSFKKV   MG     ++ L SF S SKGY
Sbjct: 259 DVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGY 318
Query: 353 YGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYC 412
            GECG RGGYMEV     E++ Q+ K+ SV LC  +SGQ    +V++PP  G+ES+E + 
Sbjct: 319 MGECGYRGGYMEVINLHPEIKGQLVKLLSVRLCPPVSGQAAMDIVVNPPVAGEESFEQFS 378
Query: 413 AERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXXTVPD 472
            E++ +L +LA++AK  ED FN + GI CN  +GAMY FPRI +P             PD
Sbjct: 379 REKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPD 438
Query: 473 AFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKF 531
            FYC +LL  TGI +VPGSGFGQ  GT+HFR TILP  +K+  ++ ++ DFH NF++K+
Sbjct: 439 MFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPVEKLKTVLQKVKDFHINFLEKY 497

>pdb|1XI9|A Chain A, Alanine Aminotransferase From Pyrococcus Furiosus Pfu-1397077-001 Length = 406

Iteration: 1
 Score =  130 bits (326), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 115/465 (24%), Positives = 196/465 (42%), Gaps = 81/465 (17%)
Query: 64  KVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLA 123
           + L  EYA+R ++V  A+ L+++           +++  NIG+P     QP    +E  A
Sbjct: 15  RALSVEYAIR-DVVLPARELEKKGI---------KVIRLNIGDPVKFDFQPPEHMKE--A 62
Query: 124 LCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEAR 183
            C       ++  +G                        Y  S+G+  LR  I    + +
Sbjct: 63  YC-------KAIKEG---------------------HNYYGDSEGLPELRKAIVEREKRK 94
Query: 184 DGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYY 243
           +G    P+D+ +T   + A+ ++   L+    D IL P P YP Y+  +  +GG  V Y 
Sbjct: 95  NGVDITPDDVRVTAAVTEALQLIFGALL-DPGDEILVPGPSYPPYTGLVKFYGGKPVEYR 153
Query: 244 LDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEG 303
             E   W  +  +++K++          +A+ VINP NPTG +  ++    I++   +  
Sbjct: 154 TIEEEDWQPDIDDIRKKITD------RTKAIAVINPNNPTGALYDKKTLEEILNIAGEYE 207
Query: 304 LVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYM 363
           + +++DE+Y    Y  E           S G   KD+ ++    +SK Y+   G R GYM
Sbjct: 208 IPVISDEIYDLMTYEGE---------HISPGSLTKDVPVIVMNGLSKVYFA-TGWRLGYM 257
Query: 364 ---EVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILS 420
              +     +EVRE I ++A + LC N   Q  A   ++ P         Y  E    + 
Sbjct: 258 YFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGPM-------DYLKE---YMK 307
Query: 421 SLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXXTVPDAFYCRRLL 480
            L  R   +    N + GI+  K +GA Y+FP+I++               D  +   +L
Sbjct: 308 KLKERRDYIYKRLNEIPGISTTKPQGAFYIFPKIEVGPWKN----------DKEFVLDVL 357
Query: 481 NATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHK 525
           +   ++ V GSGFG+  G  HFR   LP  + +   + R   F K
Sbjct: 358 HNAHVLFVHGSGFGEY-GAGHFRAVFLPPIEILEEAMDRFEKFMK 401

>pdb|1DJU|A Chain A, Crystal Structure Of Aromatic Aminotransferase From Pyrococcus Horikoshii Ot3 Length = 388

Iteration: 1
 Score = 92.4 bits (228), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 160/361 (44%), Gaps = 43/361 (11%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILCP 221
           Y  + G+  LR+ IA  ++ ++G  ADP  +I +  GA+ A  M +   ++ + + +L P
Sbjct: 58  YGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLK-DGEEVLIP 116
Query: 222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGN 281
            P +  Y+ ++ L GG  V     E   + L   E+KK +          RAL++ +P N
Sbjct: 117 TPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTD------KTRALIINSPCN 170
Query: 282 PTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDIS 341
           PTG VL +++   I DF  +  L++++DEVY+  +Y   + +     ++   G  E+ I+
Sbjct: 171 PTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYS----IASLDGMFERTIT 226
Query: 342 LVSFQSVSKGYYGECGKRGGYMEVTGFSAE--VREQIYKVASVNLCSNISGQILASLVMS 399
           +  F       +   G R G++    +  E  V+ Q+Y       C     Q  A+  + 
Sbjct: 227 VNGFSKT----FAMTGWRLGFVAAPSWIIERMVKFQMYNAT----CPVTFIQYAAAKALK 278
Query: 400 PPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXX 459
             +   ++ E    E D       RR K +    N + G+   K +GA Y+FPRI+    
Sbjct: 279 DERSW-KAVEEMRKEYD-------RRRKLVWKRLNEM-GLPTVKPKGAFYIFPRIR---- 325
Query: 460 XXXXXXXXXTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTR 519
                     +    +   +L    + +VPGS FG+  G  + R +     +K+   + R
Sbjct: 326 -------DTGLTSKKFSELMLKEARVAVVPGSAFGKA-GEGYVRISYATAYEKLEEAMER 377
Query: 520 L 520
           +
Sbjct: 378 M 378

>pdb|1GDE|A Chain A, Crystal Structure Of Pyrococcus Protein A-1 E-form Length = 389

Iteration: 1
 Score = 92.4 bits (228), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 160/361 (44%), Gaps = 43/361 (11%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILCP 221
           Y  + G+  LR+ IA  ++ ++G  ADP  +I +  GA+ A  M +   ++ + + +L P
Sbjct: 59  YGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLK-DGEEVLIP 117
Query: 222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGN 281
            P +  Y+ ++ L GG  V     E   + L   E+KK +          RAL++ +P N
Sbjct: 118 TPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTD------KTRALIINSPCN 171
Query: 282 PTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDIS 341
           PTG VL +++   I DF  +  L++++DEVY+  +Y   + +     ++   G  E+ I+
Sbjct: 172 PTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYS----IASLDGMFERTIT 227
Query: 342 LVSFQSVSKGYYGECGKRGGYMEVTGFSAE--VREQIYKVASVNLCSNISGQILASLVMS 399
           +  F       +   G R G++    +  E  V+ Q+Y       C     Q  A+  + 
Sbjct: 228 VNGFSKT----FAMTGWRLGFVAAPSWIIERMVKFQMYNAT----CPVTFIQYAAAKALK 279
Query: 400 PPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXX 459
             +   ++ E    E D       RR K +    N + G+   K +GA Y+FPRI+    
Sbjct: 280 DERSW-KAVEEMRKEYD-------RRRKLVWKRLNEM-GLPTVKPKGAFYIFPRIR---- 326
Query: 460 XXXXXXXXXTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTR 519
                     +    +   +L    + +VPGS FG+  G  + R +     +K+   + R
Sbjct: 327 -------DTGLTSKKFSELMLKEARVAVVPGSAFGKA-GEGYVRISYATAYEKLEEAMDR 378
Query: 520 L 520
           +
Sbjct: 379 M 379

>pdb|1J32|A Chain A, Aspartate Aminotransferase From Phormidium Lapideum Length = 388

Iteration: 1
 Score = 85.5 bits (210), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 145/350 (41%), Gaps = 41/350 (11%)
Query: 145 IERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVH 204
           +E A   L+Q   R    Y  + G   LR+ IA  ++  +G     ++I +T+G   ++ 
Sbjct: 49  VEAAKAALEQGKTR----YGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIF 104
Query: 205 MMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAA 264
            +M  +I    D ++ P P +  Y   + L  GT V       T + +   ++++ +   
Sbjct: 105 NLMLAMIEP-GDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITP- 162
Query: 265 KAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH 324
                  + LV   P NPTG V   +  RAI     + GL +L+DE+Y++ +Y  +   H
Sbjct: 163 -----KTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILY--DDAQH 215
Query: 325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNL 384
                +    Y E+ +    F       Y   G R G++       +   +I   ++ N+
Sbjct: 216 LSIGAASPEAY-ERSVVCSGFAKT----YAMTGWRVGFLAGPVPLVKAATKIQGHSTSNV 270
Query: 385 CSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKA 444
           C+      +A            +YE+       +L++ A R + + DA N++ G+ C K 
Sbjct: 271 CTFAQYGAIA------------AYENSQDCVQEMLAAFAERRRYMLDALNAMPGLECPKP 318
Query: 445 EGAMYLFPRIQLPXXXXXXXXXXXTVPDAFYCRRLLNATGIVLVPGSGFG 494
           +GA Y+FP I                    +C  LL+   +  VPG+ FG
Sbjct: 319 DGAFYMFPSIAKTGRSSLD-----------FCSELLDQHQVATVPGAAFG 357

>pdb|1IAX|A Chain A, Crystal Structure Of Acc Synthase Complexed With Plp Length = 428

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 158/375 (42%), Gaps = 34/375 (9%)
Query: 158 RATGAYSHSQGIKGLRDTIAAGIEARDG--FPADPNDIFLTDGASPAVHMMMQLLIRSEN 215
           +A   +    G+   R  IA  +E   G     DP  + +  GA+ A   ++   +    
Sbjct: 74  KAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETII-FCLADPG 132
Query: 216 DGILCPIPQYPLYSASIALHGGT-LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRAL 274
           D  L P P YP ++  +    G  L+P + + +  + + +  VK+  E A+   I V+ L
Sbjct: 133 DAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGL 192
Query: 275 VVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKV--SRS 332
           ++ NP NP G  L ++  ++++ F  +  + L+ DE+Y   V+    +F S  ++   + 
Sbjct: 193 ILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVF-DTPQFVSIAEILDEQE 251
Query: 333 MGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQI 392
           M Y  KD+  + + S+SK   G  G R G   +  F+ +V     K++S  L S  +   
Sbjct: 252 MTYCNKDLVHIVY-SLSKD-MGLPGFRVGI--IYSFNDDVVNCARKMSSFGLVSTQTQYF 307
Query: 393 LASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAF-NSLE--GITCNKAEGAMY 449
           LA++      + DE +       D  L   A R       F N LE  GI C K    ++
Sbjct: 308 LAAM------LSDEKF------VDNFLRESAMRLGKRHKHFTNGLEVVGIKCLKNNAGLF 355
Query: 450 LFPRIQLPXXXXXXXXXXXTVPDAFYCRRLLNATGIVLVPGSGFG-QVPGTWHFRCTILP 508
            +  ++ P           ++      R ++N   + + PGS F  Q PG W   C    
Sbjct: 356 CWMDLR-PLLRESTFDSEMSL-----WRVIINDVKLNVSPGSSFECQEPG-WFRVCFANM 408
Query: 509 QEDKIPAIVTRLTDF 523
            +  +   + R+  F
Sbjct: 409 DDGTVDIALARIRRF 423

>pdb|1O4S|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1255) From Thermotoga Maritima At 1.90 A Resolution Length = 389

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 97/367 (26%), Positives = 150/367 (40%), Gaps = 61/367 (16%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV-HMMMQLLIRSENDGILCP 221
           Y+  +GI  LR+ IA  I  R      P+ + +T+GA  A+ +  M LL     D ++  
Sbjct: 74  YTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALL--DPGDEVIVF 131
Query: 222 IPQYPLYSASIALHGGTL--VPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP 279
            P +  Y   I L GGT+  V  ++ +     LE  E    L   K K     A+++ +P
Sbjct: 132 SPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVE---GLLVGKTK-----AVLINSP 183
Query: 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKD 339
            NPTG V   E    +V   KK    +++DEVY   VY  E  F S   VS         
Sbjct: 184 NNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDE--FTSILDVSEGFD----- 236
Query: 340 ISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVM 398
             +V     SK  +   G R GY+     S +V   + K+ S    C N   Q  A   +
Sbjct: 237 -RIVYINGFSKS-HSMTGWRVGYLIS---SEKVATAVSKIQSHTTSCINTVAQYAALKAL 291
Query: 399 SPPKVGDESY--ESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQL 456
                 D SY  +++   ++ ++  L +             G+   + EGA YLF +++ 
Sbjct: 292 EV----DNSYMVQTFKERKNFVVERLKKM------------GVKFVEPEGAFYLFFKVR- 334
Query: 457 PXXXXXXXXXXXTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAI 516
                          D  +C RLL    + LVPGS F + PG    R +     +++   
Sbjct: 335 -------------GDDVKFCERLLEEKKVALVPGSAFLK-PG--FVRLSFATSIERLTEA 378
Query: 517 VTRLTDF 523
           + R+ DF
Sbjct: 379 LDRIEDF 385

>pdb|2GB3|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1698) From Thermotoga Maritima At 2.50 A Resolution Length = 409

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 79/158 (50%), Gaps = 14/158 (8%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           YSHS GI  LR+  A+  + R      P ++ +T+G S A+ +    +I +  D IL   
Sbjct: 75  YSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAI-LFSFAVIANPGDEILVLE 133
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEA---AKAKGITVRALVVINP 279
           P Y  Y+A   + G  L+P       G+      + + LE+    + KGI     V+ NP
Sbjct: 134 PFYANYNAFAKIAGVKLIPVTRRXEEGFA-----IPQNLESFINERTKGI-----VLSNP 183
Query: 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
            NPTG V  ++  R +V+  ++ GL L+ DEVY E V+
Sbjct: 184 CNPTGVVYGKDEXRYLVEIAERHGLFLIVDEVYSEIVF 221

>pdb|1X0M|A Chain A, A Human Kynurenine Aminotransferase Ii Homologue From Pyrococcus Horikoshii Ot3 Length = 403

Iteration: 1
 Score = 72.4 bits (176), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 87/385 (22%), Positives = 164/385 (42%), Gaps = 58/385 (15%)
Query: 150 QILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQL 209
           +I+++   +A   Y  ++G   LR+T+   +  R G   D NDI +T G+  A+ ++ ++
Sbjct: 57  EIMEKYADKAL-QYGTTKGFTPLRETLMKWLGKRYGISQD-NDIMITSGSQQALDLIGRV 114
Query: 210 LIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGI 269
            + +  D ++   P Y     +   +    +   LD+    G++   ++++L+  K++G 
Sbjct: 115 FL-NPGDIVVVEAPTYLAALQAFNFYEPQYIQIPLDDE---GMKVEILEEKLKELKSQGK 170
Query: 270 TVRALVVINP-GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYV--PEKKFHSF 326
            V+ +  +    NP G  + E+ ++ +++   +   +++ D+ Y E  Y   PEKK  + 
Sbjct: 171 KVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKAL 230
Query: 327 KKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCS 386
               R        I L +F  +        G R G+M   G    +R+      S +LC+
Sbjct: 231 DNEGRV-------IYLGTFSKILA-----PGFRIGWM--VGDPGIIRKMEIAKQSTDLCT 276
Query: 387 NISGQILASLVMSP---PKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNK 443
           N+ GQ++A   +      K   E  + Y   RD +L +L        + F   EG+   K
Sbjct: 277 NVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEAL--------EEFMP-EGVKWTK 327
Query: 444 AEGAMYLFPRIQLPXXXXXXXXXXXTVPDAFYCRRLLN---ATGIVLVPGSGF---GQVP 497
            EG M+++                 T+PD    +++L      G+  VPG  F     V 
Sbjct: 328 PEGGMFIW----------------VTLPDGIDSKKMLERAIKKGVAYVPGEAFYAHRDVK 371
Query: 498 GTWHFRCTILPQEDKIPAIVTRLTD 522
            T     T +  EDKI   + RL +
Sbjct: 372 NTMRLNFTYV-DEDKIMEGIKRLAE 395

>pdb|3AOV|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine Aminotransferase In Complex With Plp Length = 448

Iteration: 1
 Score = 72.4 bits (176), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 86/385 (22%), Positives = 162/385 (42%), Gaps = 58/385 (15%)
Query: 150 QILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQL 209
           +I+++   +A   Y  ++G   LR+T+   +  R G   D NDI +T G+  A+ ++ ++
Sbjct: 102 EIMEKYADKAL-QYGTTKGFTPLRETLMKWLGKRYGISQD-NDIMITSGSQQALDLIGRV 159
Query: 210 LIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGI 269
            + +  D ++   P Y     +   +    +   LD+    G++   ++++L+  K++G 
Sbjct: 160 FL-NPGDIVVVEAPTYLAALQAFNFYEPQYIQIPLDDE---GMKVEILEEKLKELKSQGK 215
Query: 270 TVRALVVINP-GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYV--PEKKFHSF 326
            V+ +  +    NP G  + E+ ++ +++   +   +++ D+ Y E  Y   PEKK  + 
Sbjct: 216 KVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKAL 275
Query: 327 KKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCS 386
               R        I L +F  +        G R G+M   G    +R+      S +LC+
Sbjct: 276 DNEGRV-------IYLGTFSKILA-----PGFRIGWM--VGDPGIIRKMEIAKQSTDLCT 321
Query: 387 NISGQILASLVMSP---PKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNK 443
           N+ GQ++A   +      K   E  + Y   RD +L +L              EG+   K
Sbjct: 322 NVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMP---------EGVKWTK 372
Query: 444 AEGAMYLFPRIQLPXXXXXXXXXXXTVPDAFYCRRLLN---ATGIVLVPGSGF---GQVP 497
            EG M+++                 T+PD    +++L      G+  VPG  F     V 
Sbjct: 373 PEGGMFIW----------------VTLPDGIDSKKMLERAIKKGVAYVPGEAFYAHRDVK 416
Query: 498 GTWHFRCTILPQEDKIPAIVTRLTD 522
            T     T +  EDKI   + RL +
Sbjct: 417 NTMRLNFTYV-DEDKIMEGIKRLAE 440

>pdb|3DYD|A Chain A, Human Tyrosine Aminotransferase Length = 427

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 136/306 (44%), Gaps = 35/306 (11%)
Query: 157 GRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND 216
           G+  G Y+ S G    R+ IA+     +  P +  D+ LT G S A+ + + +L  +   
Sbjct: 87  GKYNG-YAPSIGFLSSREEIASYYHCPEA-PLEAKDVILTSGCSQAIDLCLAVL-ANPGQ 143
Query: 217 GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVV 276
            IL P P + LY       G  +  Y L     W ++  +++  ++   A       L+V
Sbjct: 144 NILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEYLIDEKTA------CLIV 197
Query: 277 INPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG 336
            NP NP G V ++ + + I+    ++ + +LADE+Y + V+  + K+     +S      
Sbjct: 198 NNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVF-SDCKYEPLATLS------ 250
Query: 337 EKDISLVSFQSVSKGYYGECGKRGGYMEVTG----FSAEVREQIYKVASVNL--CSNISG 390
             D+ ++S   ++K +    G R G++ +      F  E+R+ + K++   L  C+ + G
Sbjct: 251 -TDVPILSCGGLAKRWLVP-GWRLGWILIHDRRDIFGNEIRDGLVKLSQRILGPCTIVQG 308
Query: 391 QILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYL 450
            + + L  +P     E Y +        LS L   A     A  ++ G+   +  GAMYL
Sbjct: 309 ALKSILCRTP----GEFYHN-------TLSFLKSNADLCYGALAAIPGLRPVRPSGAMYL 357
Query: 451 FPRIQL 456
              I++
Sbjct: 358 MVGIEM 363

>pdb|1V2D|A Chain A, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase Length = 381

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 93/388 (23%), Positives = 150/388 (38%), Gaps = 72/388 (18%)
Query: 140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGA 199
           F  +++ RA    DQ        Y+   G+  LR+ +A      + F  +P  + +T GA
Sbjct: 42  FLLEAVRRALGRQDQ--------YAPPAGLPALREALA------EEFAVEPESVVVTSGA 87
Query: 200 SPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLD-EATGWGLETSEVK 258
           + A+++++Q L+    D ++   P + +Y     L G       LD    G+ L+ S ++
Sbjct: 88  TEALYVLLQSLV-GPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALE 146
Query: 259 KQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYV 318
           K L          RAL++  P NPTG V  E    AI    +   L L++DEVY E    
Sbjct: 147 KALTP------RTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDE---- 196
Query: 319 PEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYK 378
                         + YGE+   L  F        G  GKR   +E TG+        + 
Sbjct: 197 --------------LYYGERPRRLREFAPERTFTVGSAGKR---LEATGYRVG-----WI 234
Query: 379 VASVNLCSNISGQILASLVMSPPKVGDESYESY-CAERDGILSSL----ARRAKTLEDAF 433
           V        ++G    +   +P  +     E+   A R+G   +L     RR   L    
Sbjct: 235 VGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGL 294
Query: 434 NSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXXTVPDAFYCRRLLNATGIVLVPGSGF 493
            ++ G+     EG  +L    +LP              DAF   RL+    + L+P S F
Sbjct: 295 RAM-GLRVYVPEGTYFLM--AELPGW------------DAF---RLVEEARVALIPASAF 336
Query: 494 G-QVPGTWHFRCTILPQEDKIPAIVTRL 520
             + P    FR      E+++   + RL
Sbjct: 337 YLEDPPKDLFRFAFCKTEEELHLALERL 364

>pdb|3PDX|A Chain A, Crystal Structural Of Mouse Tyrosine Aminotransferase Length = 402

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/373 (22%), Positives = 159/373 (42%), Gaps = 45/373 (12%)
Query: 157 GRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND 216
           G+  G Y+ S G    R+ +A+     +  P +  D+ LT G S A+ + + +L  +   
Sbjct: 64  GKYNG-YAPSIGYLSSREEVASYYHCPEA-PLEAKDVILTSGCSQAIELCLAVL-ANPGQ 120
Query: 217 GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVV 276
            IL P P + LY       G  +  Y L     W ++  +++  ++   A       LVV
Sbjct: 121 NILIPRPGFSLYRTLAESMGIEVKLYNLLPEKSWEIDLKQLESLIDEKTA------CLVV 174
Query: 277 INPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG 336
            NP NP G V ++ + + I+   +++ + +LADE+Y + V+  + K+     +S      
Sbjct: 175 NNPSNPCGSVFSKRHLQKILAVAERQCVPILADEIYGDMVF-SDCKYEPMATLS------ 227
Query: 337 EKDISLVSFQSVSKGYYGECGKRGGYMEVTG----FSAEVREQIYKVASVNL--CSNISG 390
             ++ ++S   ++  +    G R G++ +      F  E+R+ + K++   L  C+ + G
Sbjct: 228 -TNVPILSCGGLAXRWLVP-GWRLGWILIHDRRDIFGNEIRDGLVKLSQRILGPCTIVQG 285
Query: 391 QILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYL 450
            + + L  +P     E Y+         LS L   A     A +++ G+   +  GAMYL
Sbjct: 286 ALKSILQRTP----QEFYQD-------TLSFLKSNADLCYGALSAIPGLQPVRPSGAMYL 334
Query: 451 FPRIQLPXXXXXXXXXXXTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQE 510
              I++               D  +  RL+    +  +P + F + P    FR  I   E
Sbjct: 335 MVGIEMEHFPEFEN-------DVEFTERLIAEQSVHCLPATCF-EYPN--FFRVVITVPE 384
Query: 511 DKIPAIVTRLTDF 523
             +    +R+ +F
Sbjct: 385 VMMLEACSRIQEF 397

>pdb|1U08|A Chain A, Crystal Structure And Reactivity Of Ybdl From Escherichia Coli Identify A Methionine Aminotransferase Function. Length = 386

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 93/395 (23%), Positives = 163/395 (41%), Gaps = 47/395 (11%)
Query: 107 PQS-LGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSH 165
           PQS L Q   T F ++ AL      ++ S  QG    D      + L     +    Y+ 
Sbjct: 8   PQSKLPQLGTTIFTQMSALAQQHQAINLS--QGFPDFDGPRYLQERLAHHVAQGANQYAP 65
Query: 166 SQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQ 224
             G++ LR+ IA   E   G+  D + DI +T GA+ A++  +  L+R+  D ++C  P 
Sbjct: 66  MTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVRN-GDEVICFDPS 124
Query: 225 YPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVIN-PGNPT 283
           Y  Y+ +IAL GG +            L+    +   +   A       LV++N P NP+
Sbjct: 125 YDSYAPAIALSGGIV--------KRMALQPPHFRVDWQEFAALLSERTRLVILNTPHNPS 176
Query: 284 GQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLV 343
             V  + +  A+        + +++DEVY E++   ++   S       + + +     V
Sbjct: 177 ATVWQQADFAALWQAIAGHEIFVISDEVY-EHINFSQQGHASV------LAHPQLRERAV 229
Query: 344 SFQSVSKGYYGECGKRGGYMEVTGFSAEVRE-QIYKVASVNLCSNISGQILASLVMSPPK 402
           +  S  K Y+    K G  +     SAE+R+   Y   SVN  + ++   LA ++ + P+
Sbjct: 230 AVSSFGKTYHMTGWKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLA---LADMLRAEPE 286
Query: 403 VGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXX 462
                 + Y  +RD ++++L           + LE + C   EG  +L            
Sbjct: 287 HYLALPDFYRQKRDILVNALNE---------SRLEILPC---EGTYFLL----------V 324
Query: 463 XXXXXXTVPDAFYCRRLLNATGIVLVPGSGFGQVP 497
                 T+ D  +C+ L    G+  +P S F   P
Sbjct: 325 DYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADP 359

>pdb|1YNU|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L-Vinylglycine Length = 473

Iteration: 1
 Score = 65.1 bits (157), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 64/125 (51%), Gaps = 2/125 (1%)
Query: 189 DPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGT-LVPYYLDEA 247
           DPN + LT GA+ A    +   +    + +L P P YP +   +    G  +VP +   +
Sbjct: 110 DPNHLVLTAGATSANETFI-FCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSS 168
Query: 248 TGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLL 307
            G+ +  + +++  + A+ + + V+ ++V NP NP G  +       ++ F + +G+ L+
Sbjct: 169 NGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLI 228
Query: 308 ADEVY 312
           +DE+Y
Sbjct: 229 SDEIY 233

>pdb|1B8G|A Chain A, 1-aminocyclopropane-1-carboxylate Synthase Length = 429

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 64/125 (51%), Gaps = 2/125 (1%)
Query: 189 DPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGT-LVPYYLDEA 247
           DPN + LT GA+ A    +   +    + +L P P YP +   +    G  +VP +   +
Sbjct: 108 DPNHLVLTAGATSANETFI-FCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSS 166
Query: 248 TGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLL 307
            G+ +  + +++  + A+ + + V+ ++V NP NP G  +       ++ F + +G+ L+
Sbjct: 167 NGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLI 226
Query: 308 ADEVY 312
           +DE+Y
Sbjct: 227 SDEIY 231

>pdb|1M7Y|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L- Aminoethoxyvinylglycine Length = 435

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 64/125 (51%), Gaps = 2/125 (1%)
Query: 189 DPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGT-LVPYYLDEA 247
           DPN + LT GA+ A    +   +    + +L P P YP +   +    G  +VP +   +
Sbjct: 110 DPNHLVLTAGATSANETFI-FCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSS 168
Query: 248 TGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLL 307
            G+ +  + +++  + A+ + + V+ ++V NP NP G  +       ++ F + +G+ L+
Sbjct: 169 NGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLI 228
Query: 308 ADEVY 312
           +DE+Y
Sbjct: 229 SDEIY 233

>pdb|2Z61|A Chain A, Crystal Structure Of Mj0684 From Methanococcus Jannaschii Reveals Its Similarity In The Active Site To Kynurenine Aminotransferases Length = 370

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 151/368 (41%), Gaps = 69/368 (18%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPAD--PNDIFLTDGASPAVHMMMQLLIRSENDGILC 220
           Y+ S+GI  LR+ I+     +D + AD  P++I +T G+S  +   +  +I  + D +L 
Sbjct: 62  YTDSRGILELREKISEL--YKDKYKADIIPDNIIITGGSSLGLFFALSSII-DDGDEVLI 118
Query: 221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPG 280
             P YP Y   I   G    P + D    + +E+ E     EA   K    +A+++ +P 
Sbjct: 119 QNPCYPCYKNFIRFLGAK--PVFCD----FTVESLE-----EALSDK---TKAIIINSPS 164
Query: 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDI 340
           NP G+V+     R I +F  +    +++DE+Y   VY  E K +S  +   ++   EK I
Sbjct: 165 NPLGEVI----DREIYEFAYENIPYIISDEIYNGLVY--EGKCYSAIEFDENL---EKTI 215
Query: 341 SLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSP 400
            +  F  +    Y   G R GY+       E+ E I K+               +L +S 
Sbjct: 216 LINGFSXL----YAMTGWRIGYVISND---EIIEAILKLQQ-------------NLFISA 255
Query: 401 PKVGD----ESYESYCA-ERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQ 455
           P +      +++E     E + ++    RR + +        G   N   GA Y+FP I 
Sbjct: 256 PTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDF-GWEVNNPIGAYYVFPNIG 314
Query: 456 LPXXXXXXXXXXXTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPA 515
                              +  +LL    + L PG GFG   G  + R +     + I  
Sbjct: 315 EDGRE--------------FAYKLLKEKFVALTPGIGFGS-KGKNYIRISYANSYENIKE 359
Query: 516 IVTRLTDF 523
            + R+ +F
Sbjct: 360 GLERIKEF 367

>pdb|1GC3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 2 Complexed With Tryptophan Length = 385

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 75/358 (20%), Positives = 134/358 (37%), Gaps = 43/358 (12%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y+   GI  LR+ +A      +G    P +  +T G S A+  + Q ++    D ++   
Sbjct: 64  YAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAIL-DPGDEVIVLS 122
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
           P +  Y   +   GG +V        G+  +   V++ +          +ALVV +P NP
Sbjct: 123 PYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITP------RTKALVVNSPNNP 176
Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL 342
           TG V  +E   A+     +    L++DE+Y+  +Y  E +  S  +V+            
Sbjct: 177 TGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLY--EGEHFSPGRVAPE--------HT 226
Query: 343 VSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPK 402
           ++    +K  +   G R GY      +   +E I  +ASV+  S  S   +A        
Sbjct: 227 LTVNGAAKA-FAMTGWRIGY------ACGPKEVIKAMASVSRQSTTSPDTIAQWATLEAL 279
Query: 403 VGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXX 462
              E+  ++    +    +  RR   L +   +L G+   +  GA Y+            
Sbjct: 280 TNQEASRAFV---EMAREAYRRRRDLLLEGLTAL-GLKAVRPSGAFYVL----------- 324
Query: 463 XXXXXXTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRL 520
                   PD       L   G+ +VPG+ F       H R +    E+ +   + R 
Sbjct: 325 -MDTSPIAPDEVRAAERLLEAGVAVVPGTDFAAF---GHVRLSYATSEENLRKALERF 378

>pdb|5BJ3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 1 Length = 385

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 75/358 (20%), Positives = 134/358 (37%), Gaps = 43/358 (12%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y+   GI  LR+ +A      +G    P +  +T G S A+  + Q ++    D ++   
Sbjct: 64  YAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAIL-DPGDEVIVLS 122
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
           P +  Y   +   GG +V        G+  +   V++ +          +ALVV +P NP
Sbjct: 123 PYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITP------RTKALVVNSPNNP 176
Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL 342
           TG V  +E   A+     +    L++DE+Y+  +Y  E +  S  +V+            
Sbjct: 177 TGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLY--EGEHFSPGRVAPE--------HT 226
Query: 343 VSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPK 402
           ++    +K  +   G R GY      +   +E I  +ASV+  S  S   +A        
Sbjct: 227 LTVNGAAKA-FAMTGWRIGY------ACGPKEVIKAMASVSRQSTTSPDTIAQWATLEAL 279
Query: 403 VGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXX 462
              E+  ++    +    +  RR   L +   +L G+   +  GA Y+            
Sbjct: 280 TNQEASRAFV---EMAREAYRRRRDLLLEGLTAL-GLKAVRPSGAFYVL----------- 324
Query: 463 XXXXXXTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRL 520
                   PD       L   G+ +VPG+ F       H R +    E+ +   + R 
Sbjct: 325 -MDTSPIAPDEVRAAERLLEAGVAVVPGTDFAAF---GHVRLSYATSEENLRKALERF 378

>pdb|1GCK|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double Mutant 1 Complexed With Aspartate Length = 385

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 75/358 (20%), Positives = 134/358 (37%), Gaps = 43/358 (12%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y+   GI  LR+ +A      +G    P +  +T G S A+  + Q ++    D ++   
Sbjct: 64  YAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAIL-DPGDEVIVLS 122
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
           P +  Y   +   GG +V        G+  +   V++ +          +ALVV +P NP
Sbjct: 123 PYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITP------RTKALVVNSPNNP 176
Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL 342
           TG V  +E   A+     +    L++DE+Y+  +Y  E +  S  +V+            
Sbjct: 177 TGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLY--EGEHFSPGRVAPE--------HT 226
Query: 343 VSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPK 402
           ++    +K  +   G R GY      +   +E I  +ASV+  S  S   +A        
Sbjct: 227 LTVNGAAKA-FAMTGWRIGY------ACGPKEVIKAMASVSRQSTTSPDTIAQWATLEAL 279
Query: 403 VGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXX 462
              E+  ++    +    +  RR   L +   +L G+   +  GA Y+            
Sbjct: 280 TNQEASRAFV---EMAREAYRRRRDLLLEGLTAL-GLKAVRPSGAFYVL----------- 324
Query: 463 XXXXXXTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRL 520
                   PD       L   G+ +VPG+ F       H R +    E+ +   + R 
Sbjct: 325 -MDTSPIAPDEVRAAERLLEAGVAVVPGTDFAAF---GHVRLSYATSEENLRKALERF 378

>pdb|1B5O|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Single Mutant 1 Length = 385

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 75/358 (20%), Positives = 134/358 (37%), Gaps = 43/358 (12%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y+   GI  LR+ +A      +G    P +  +T G S A+  + Q ++    D ++   
Sbjct: 64  YAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAIL-DPGDEVIVLS 122
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
           P +  Y   +   GG +V        G+  +   V++ +          +ALVV +P NP
Sbjct: 123 PYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITP------RTKALVVNSPNNP 176
Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL 342
           TG V  +E   A+     +    L++DE+Y+  +Y  E +  S  +V+            
Sbjct: 177 TGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLY--EGEHFSPGRVAPE--------HT 226
Query: 343 VSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPK 402
           ++    +K  +   G R GY      +   +E I  +ASV+  S  S   +A        
Sbjct: 227 LTVNGAAKA-FAMTGWRIGY------ACGPKEVIKAMASVSSQSTTSPDTIAQWATLEAL 279
Query: 403 VGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXX 462
              E+  ++    +    +  RR   L +   +L G+   +  GA Y+            
Sbjct: 280 TNQEASRAFV---EMAREAYRRRRDLLLEGLTAL-GLKAVRPSGAFYVL----------- 324
Query: 463 XXXXXXTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRL 520
                   PD       L   G+ +VPG+ F       H R +    E+ +   + R 
Sbjct: 325 -MDTSPIAPDEVRAAERLLEAGVAVVPGTDFAAF---GHVRLSYATSEENLRKALERF 378

>pdb|3B1C|A Chain A, Crystal Structure Of Betac-S Lyase From Streptococcus Anginosus: Internal Aldimine Form Length = 392

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 93/215 (43%), Gaps = 14/215 (6%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y ++     L   +    ++   +  D  DI   +G  PA+ + +Q   + E + +L   
Sbjct: 62  YGYTYASDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAFTK-EGEAVLINS 120
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
           P YP ++ S+ L+   LV   L E  G      E   QLE    +   V+  ++ NP NP
Sbjct: 121 PVYPPFARSVRLNNRKLVSNSLKEENGLFQIDFE---QLENDIVEN-DVKLYLLCNPHNP 176
Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL 342
            G+V   E    I   C+K  ++L++DE++Q+      +   SF  VS       KD +L
Sbjct: 177 GGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHV-SFNTVSPDF----KDFAL 231
Query: 343 VSFQSVSKGYYGECGKRGGY--MEVTGFSAEVREQ 375
           V   S +K  +   G +  Y  +E     A+ + Q
Sbjct: 232 V-LSSATKT-FNIAGTKNSYAIIENPTLCAQFKHQ 264

>pdb|1BKG|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus With Maleate Length = 385

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 74/358 (20%), Positives = 133/358 (37%), Gaps = 43/358 (12%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y+   GI  LR+ +A      +G    P +  +T G   A+  + Q ++    D ++   
Sbjct: 64  YAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGKQALFNLFQAIL-DPGDEVIVLS 122
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
           P +  Y   +   GG +V        G+  +   V++ +          +ALVV +P NP
Sbjct: 123 PYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITP------RTKALVVNSPNNP 176
Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL 342
           TG V  +E   A+     +    L++DE+Y+  +Y  E +  S  +V+            
Sbjct: 177 TGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLY--EGEHFSPGRVAPE--------HT 226
Query: 343 VSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPK 402
           ++    +K  +   G R GY      +   +E I  +ASV+  S  S   +A        
Sbjct: 227 LTVNGAAKA-FAMTGWRIGY------ACGPKEVIKAMASVSSQSTTSPDTIAQWATLEAL 279
Query: 403 VGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXX 462
              E+  ++    +    +  RR   L +   +L G+   +  GA Y+            
Sbjct: 280 TNQEASRAFV---EMAREAYRRRRDLLLEGLTAL-GLKAVRPSGAFYVL----------- 324
Query: 463 XXXXXXTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRL 520
                   PD       L   G+ +VPG+ F       H R +    E+ +   + R 
Sbjct: 325 -MDTSPIAPDEVRAAERLLEAGVAVVPGTDFAAF---GHVRLSYATSEENLRKALERF 378

>pdb|2X5D|A Chain A, Crystal Structure Of A Probable Aminotransferase From Pseudomonas Aeruginosa Length = 412

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 148/362 (40%), Gaps = 53/362 (14%)
Query: 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAV-HMMMQLLIRSENDG 217
           T  YS S+GI  LR  I+     R     DP ++  +T G+   + H+M+  L     D 
Sbjct: 68  THGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATL--DHGDT 125
Query: 218 ILCPIPQYP--LYSASIA---LHGGTLVPYYLDEATGWGLE-TSEVKKQLEAAKAKGITV 271
           IL P P YP  +Y A IA   +    LVP         G++  +E+++ +  +  K    
Sbjct: 126 ILVPNPSYPIHIYGAVIAGAQVRSVPLVP---------GIDFFNELERAIRESIPKP--- 173
Query: 272 RALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSR 331
           R +++  P NPT Q +  +    +V   K+  ++++ D  Y + VY        +K  S 
Sbjct: 174 RMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVY------DGWKAPSI 227
Query: 332 SMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQ 391
               G KDI+ V F ++SK  Y   G R G+M           +I         + +   
Sbjct: 228 MQVPGAKDIA-VEFFTLSKS-YNMAGWRIGFMVGNPELVSALARIKSYHDYGTFTPLQVA 285
Query: 392 ILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLF 451
            +A+L      V D + + Y   RD ++       K L +A     G      + +MY++
Sbjct: 286 AIAALEGDQQCVRDIARQ-YQQRRDVLV-------KGLREA-----GWMVENPKASMYVW 332
Query: 452 PRIQLPXXXXXXXXXXXTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQED 511
            +I  P                 + ++LL    + + PG GFG   G  H R  ++   D
Sbjct: 333 AKIPEPYAHLGSLE---------FAKKLLQDAKVSVSPGIGFGDY-GDDHVRFALIENRD 382
Query: 512 KI 513
           ++
Sbjct: 383 RL 384

>pdb|1BJW|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus Length = 382

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 74/358 (20%), Positives = 135/358 (37%), Gaps = 43/358 (12%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y+   GI  LR+ +A      +G    P +  +T G   A+  + Q ++    D ++   
Sbjct: 64  YAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGKQALFNLFQAIL-DPGDEVIVLS 122
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
           P +  Y   +   GG +V        G+  +   V++ +          +ALVV +P NP
Sbjct: 123 PYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITP------RTKALVVNSPNNP 176
Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL 342
           TG V  +E   A+     +    L++DE+Y+  +Y  E +  S  +V+      E  +++
Sbjct: 177 TGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLY--EGEHFSPGRVA-----PEHTLTV 229
Query: 343 VSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPK 402
               + +   +   G R GY      +   +E I  +ASV+  S  S   +A        
Sbjct: 230 ----NGAAXAFAMTGWRIGY------ACGPKEVIKAMASVSSQSTTSPDTIAQWATLEAL 279
Query: 403 VGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXX 462
              E+  ++    +    +  RR   L +   +L G+   +  GA Y+            
Sbjct: 280 TNQEASRAFV---EMAREAYRRRRDLLLEGLTAL-GLKAVRPSGAFYVL----------- 324
Query: 463 XXXXXXTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRL 520
                   PD       L   G+ +VPG+ F       H R +    E+ +   + R 
Sbjct: 325 -MDTSPIAPDEVRAAERLLEAGVAVVPGTDFAAF---GHVRLSYATSEENLRKALERF 378

>pdb|3NRA|A Chain A, Crystal Structure Of An Aspartate Aminotransferase (Yp_354942.1) From Rhodobacter Sphaeroides 2.4.1 At 2.15 A Resolution Length = 407

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 73/341 (21%), Positives = 127/341 (37%), Gaps = 50/341 (14%)
Query: 162 AYSHSQGIKGLRDTIAAGIEARDGFPADPND-IFLTDGASPAVHMMMQLLIRSENDGILC 220
           AY+  +G  G+RD +A  + A  G P D  D + +T G   A+ + +   + +  D +  
Sbjct: 73  AYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATV-ARGDKVAI 131
Query: 221 PIPQYPLYSASIALHGGTLVPYYLD----EATGWGLETSEVKKQLEAAKAKGITVRALVV 276
             P Y      +    G  VP  LD    + T  GL+ + +++  +A        R  + 
Sbjct: 132 VQPDYFANRKLVEFFEGEXVPVQLDYVSADETRAGLDLTGLEEAFKAG------ARVFLF 185
Query: 277 INPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG 336
            NP NP G V + E    I     + G  ++AD++Y    Y       S+  +       
Sbjct: 186 SNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGA----SYTHLRAEAAVD 241
Query: 337 EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEV----REQIYKVASVNLCSNISGQI 392
            +++  +   S ++          GY     F +       E++  + S+   +  S  +
Sbjct: 242 AENVVTIXGPSXTESL-------SGYRLGVAFGSRAIIARXEKLQAIVSLR-AAGYSQAV 293
Query: 393 LASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFP 452
           L       P   ++    + A RD +L  L              EG+     +   YLFP
Sbjct: 294 LRGWFDEAPGWXEDRIARHQAIRDELLHVL-----------RGXEGVFARTPQAGSYLFP 342
Query: 453 RIQLPXXXXXXXXXXXTVPDAFYCRRLLNATGIVLVPGSGF 493
           R  LP            V  A + + L    G+V+ PG+ F
Sbjct: 343 R--LP---------KLAVAPAEFVKILRLQAGVVVTPGTEF 372

>pdb|3L8A|A Chain A, Crystal Structure Of Metc From Streptococcus Mutans Length = 421

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Query: 192 DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATG-W 250
           DI   DG  PA+ + +Q     + D +L   P Y  ++ +I L+   LV   L    G +
Sbjct: 121 DILFIDGVVPAISIALQAF-SEKGDAVLINSPVYYPFARTIRLNDHRLVENSLQIINGRF 179
Query: 251 GLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADE 310
            ++  +++K +         V+  ++ +P NP G+V   ++   I + CKK G++L++DE
Sbjct: 180 EIDFEQLEKDIIDN-----NVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDE 234
Query: 311 VYQE 314
           ++Q+
Sbjct: 235 IHQD 238

>pdb|1WST|A Chain A, Crystal Structure Of Multiple Substrate Aminotransferase (Msat) From Thermococcus Profundus Length = 417

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 95/436 (21%), Positives = 173/436 (39%), Gaps = 73/436 (16%)
Query: 119 REVLALCDHPSILDRSETQGL-----FSADSIER-AWQILDQIPGRATGAYSHSQGIKGL 172
           RE+L L +   ++  S   GL     F  ++I++ A ++L++   +A   Y  ++G   L
Sbjct: 32  RELLKLVETSDVI--SLAGGLPAPETFPVETIKKIAVEVLEEHADKAL-QYGTTKGFTPL 88
Query: 173 RDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI 232
           R  +A  +E R   P    +I    G+  A+ ++ ++ + +  D I+   P Y     + 
Sbjct: 89  RLALARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFL-NPGDPIVVEAPTYLAAIQAF 147
Query: 233 ALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP-GNPTGQVLAEEN 291
             +    +   LD+    G+    ++++LE  + +G  V+ +  ++   NP G  ++ + 
Sbjct: 148 KYYDPEFISIPLDDK---GMRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDR 204
Query: 292 QRAIVDFCKKEGLVLLADEVYQENVYV-----PEKKFHSFKKVSRSMGYGEKDISLVSFQ 346
           ++ +++   +   +++ D  Y E  Y      P K F  + +V          I L +F 
Sbjct: 205 RKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRV----------IYLGTFS 254
Query: 347 SVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILA-------SLVMS 399
            +        G R G+  V      +R+      S++LC+N  GQ +A        L   
Sbjct: 255 KILA-----PGFRIGW--VAAHPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYLDEH 307
Query: 400 PPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXX 459
            PK+     E Y   RD +L +L              EG+   K EG M++  R+ LP  
Sbjct: 308 IPKI----IEFYKPRRDAMLEALEEYMP---------EGVEWTKPEGGMFV--RVTLPEG 352
Query: 460 XXXXXXXXXTVPDAFYCRRLLNATGIVLVPGSGF---GQVPGTWHFRCTILPQEDKIPAI 516
                     V           A G+  VPG  F        T     T +P+E  I   
Sbjct: 353 IDTKLMMERAV-----------AKGVAYVPGEAFFVHRDKKNTMRLNFTYVPEET-IREG 400
Query: 517 VTRLTDFHKNFMDKFR 532
           V RL +  K  M + +
Sbjct: 401 VRRLAETIKEEMKRVK 416

>pdb|3ELE|A Chain A, Crystal Structure Of Amino Transferase (rer070207001803) From Eubacterium Rectale At 2.10 A Resolution Length = 398

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 76/165 (46%), Gaps = 13/165 (7%)
Query: 159 ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI 218
           A   Y+ +QG    R  IA  +    G   + ++++ T GA+ ++ +  + L     D  
Sbjct: 68  ALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYXTXGAAASLSICFRALTSDAYDEF 127
Query: 219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVIN 278
           +   P +P Y   +   G  LV    D    + ++   +++++ A        R +++ +
Sbjct: 128 ITIAPYFPEYKVFVNAAGARLVEVPAD-TEHFQIDFDALEERINA------HTRGVIINS 180
Query: 279 PGNPTGQVLAEENQRAIVDFCKKEG------LVLLADEVYQENVY 317
           P NP+G V +EE  + + D  +K+       + ++ADE Y+E VY
Sbjct: 181 PNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVY 225

>pdb|1D2F|A Chain A, X-Ray Structure Of Maly From Escherichia Coli: A Pyridoxal-5'- Phosphate-Dependent Enzyme Acting As A Modulator In Mal Gene Expression Length = 390

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 66/121 (54%), Gaps = 9/121 (7%)
Query: 201 PAVHMMMQLLIRSEND---GILCPIPQYPLYSASIALHGGTLVPYYLD-EATGWGLETSE 256
           P+V  M+  LIR  ++   G++   P Y  +  +I  +  T++P  L+ +A GW  +   
Sbjct: 94  PSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMG- 152
Query: 257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENV 316
              +LEA  AK    + +++ +P NPTG+V   +    + D C++ G+ +++DE++ + V
Sbjct: 153 ---KLEAVLAKP-ECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMV 208
Query: 317 Y 317
           +
Sbjct: 209 W 209

>pdb|3JTX|A Chain A, Crystal Structure Of Aminotransferase (np_283882.1) From Neisseria Meningitidis Z2491 At 1.91 A Resolution Length = 396

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 84/199 (42%), Gaps = 28/199 (14%)
Query: 163 YSHSQGIKGLRDTIAAGIEAR-DGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGI-- 218
           Y  + G+  LR   A  ++ R DG   D  N+I    G+  A+   +Q ++   +DGI  
Sbjct: 62  YPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVLNPVSDGIKP 121
Query: 219 --LCPIPQYPLYSASIALHGGTL------VPYYLDEATGWGLETSEVKKQLEAAKAKGIT 270
             + P P Y +Y  +  L GG +       P +  +   W   + EV K+          
Sbjct: 122 AIVSPNPFYQIYEGATLLGGGEIHFANCPAPSFNPD---WRSISEEVWKR---------- 168
Query: 271 VRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVS 330
            + + V +P NP+G VL  +  + + D   K G ++ +DE Y E  +   K     +  +
Sbjct: 169 TKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAA 228
Query: 331 RSMGYGEKDISLVSFQSVS 349
           +    G     L+ F S+S
Sbjct: 229 Q---LGRSRQKLLXFTSLS 244

>pdb|3B46|A Chain A, Crystal Structure Of Bna3p, A Putative Kynurenine Aminotransferase From Saccharomyces Cerevisiae Length = 447

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 85/187 (45%), Gaps = 16/187 (8%)
Query: 137 QGLFSAD----SIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPND 192
           QG FS      +I+ A + LD IP      YS ++G   L +++               +
Sbjct: 64  QGFFSYSPPQFAIKEAQKALD-IP--MVNQYSPTRGRPSLINSLIKLYSPIYNTELKAEN 120
Query: 193 IFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLV------PYYLDE 246
           + +T GA+  +   +  L+ +  D ++   P +  Y  +I L GG +V      P  LD+
Sbjct: 121 VTVTTGANEGILSCLMGLLNA-GDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQ 179
Query: 247 ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVL 306
               G E +   +Q E  KA     +A+++  P NP G+V   E    + + C K  +V+
Sbjct: 180 RNTRGEEWTIDFEQFE--KAITSKTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVI 237
Query: 307 LADEVYQ 313
           ++DEVY+
Sbjct: 238 ISDEVYE 244

>pdb|3E2F|A Chain A, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii, Plp-Bound Form Length = 410

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 76/168 (45%), Gaps = 25/168 (14%)
Query: 189 DPND-IFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLD-- 245
           DPN+ I +  GA  ++   +Q L+    D ++  +P Y  Y   + + G   VP ++   
Sbjct: 83  DPNEEILVAVGAYGSLFNSIQGLV-DPGDEVIIMVPFYDCYEPMVRMAGA--VPVFIPLR 139
Query: 246 ---------EATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIV 296
                     ++ W  +  E++ +  +        +A+++  P NP G+V   +  + I 
Sbjct: 140 SKPTDGMKWTSSDWTFDPRELESKFSSK------TKAIILNTPHNPLGKVYTRQELQVIA 193
Query: 297 DFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVS 344
           D C K   + ++DEVY+  VY      H+  K++   G  E+ I++ S
Sbjct: 194 DLCVKHDTLCISDEVYEWLVYTG----HTHVKIATLPGMWERTITIGS 237

>pdb|1W7N|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I In Pmp Form Length = 422

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 18/166 (10%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILCP 221
           Y+ + G   L   +A+      G   DP  ++ +T G   A+    Q L+  E D ++  
Sbjct: 63  YTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALV-DEGDEVIII 121
Query: 222 IPQYPLYSASIALHGGTLVPYYLD----------EATGWGLETSEVKKQLEAAKAKGITV 271
            P +  Y     + GG  V   L            ++ W L+  E+  +  +        
Sbjct: 122 EPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTS------RT 175
Query: 272 RALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
           +ALV+  P NP G+V + E    +   C++  +V + DEVYQ  VY
Sbjct: 176 KALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVY 221

>pdb|3E2Z|B Chain B, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii In Complex With Kynurenine Length = 410

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 76/168 (45%), Gaps = 25/168 (14%)
Query: 189 DPND-IFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLD-- 245
           DPN+ I +  GA  ++   +Q L+    D ++  +P Y  Y   + + G   VP ++   
Sbjct: 83  DPNEEILVAVGAYGSLFNSIQGLV-DPGDEVIIMVPFYDCYEPMVRMAGA--VPVFIPLR 139
Query: 246 ---------EATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIV 296
                     ++ W  +  E++ +  +        +A+++  P NP G+V   +  + I 
Sbjct: 140 SKPTDGMKWTSSDWTFDPRELESKFSSK------TKAIILNTPHNPLGKVYTRQELQVIA 193
Query: 297 DFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVS 344
           D C K   + ++DEVY+  VY      H+  K++   G  E+ I++ S
Sbjct: 194 DLCVKHDTLCISDEVYEWLVYTG----HTHVKIATLPGMWERTITIGS 237

>pdb|3FVS|A Chain A, Human Kynurenine Aminotransferase I In Complex With Glycerol Length = 422

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 18/166 (10%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILCP 221
           Y+ + G   L   +A+      G   DP  ++ +T G   A+    Q L+  E D ++  
Sbjct: 63  YTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALV-DEGDEVIII 121
Query: 222 IPQYPLYSASIALHGGTLVPYYLD----------EATGWGLETSEVKKQLEAAKAKGITV 271
            P +  Y     + GG  V   L            ++ W L+  E+  +  +        
Sbjct: 122 EPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTS------RT 175
Query: 272 RALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
           +ALV+  P NP G+V + E    +   C++  +V + DEVYQ  VY
Sbjct: 176 KALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVY 221

>pdb|1W7L|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I Length = 422

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 18/166 (10%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILCP 221
           Y+ + G   L   +A+      G   DP  ++ +T G   A+    Q L+  E D ++  
Sbjct: 63  YTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALV-DEGDEVIII 121
Query: 222 IPQYPLYSASIALHGGTLVPYYLD----------EATGWGLETSEVKKQLEAAKAKGITV 271
            P +  Y     + GG  V   L            ++ W L+  E+  +  +        
Sbjct: 122 EPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTS------RT 175
Query: 272 RALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
           +ALV+  P NP G+V + E    +   C++  +V + DEVYQ  VY
Sbjct: 176 KALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVY 221

>pdb|3H14|A Chain A, Crystal Structure Of A Putative Aminotransferase From Silicibacter Pomeroyi Length = 391

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 92/230 (40%), Gaps = 24/230 (10%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y+ + G+  LR  IA       G   DP  + +T G+S    +    L  S  D +    
Sbjct: 64  YTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTALFDS-GDRVGIGA 122
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
           P YP Y   +   G  LVP  L  A        E + Q   A   G+ +  L V +P NP
Sbjct: 123 PGYPSYRQILRALG--LVPVDLPTA-------PENRLQPVPADFAGLDLAGLXVASPANP 173
Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL 342
           TG  L      A+++  + +G   ++DE+Y           H  +  ++++   E     
Sbjct: 174 TGTXLDHAAXGALIEAAQAQGASFISDEIY-----------HGIEYEAKAVTALELTDEC 222
Query: 343 VSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQI 392
               S SK Y+   G R G+  V      V E+I +  +  +C+  + Q+
Sbjct: 223 YVINSFSK-YFSXTGWRVGWXVVPEDQVRVVERIAQ--NXFICAPHASQV 269

>pdb|1GEW|A Chain A, Crystal Structure Of Histidinol-Phosphate Aminotransferase Complexed With Pyridoxal 5'-Phosphate Length = 356

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 112/251 (44%), Gaps = 35/251 (13%)
Query: 190 PNDIFLTDGASPAVHMMMQLLIRSENDGIL-CPIPQYPLYSASIALHG--GTLVPYYLDE 246
           P  + ++ GA   + ++++       D IL CP P Y +YS S    G     VP  LD 
Sbjct: 75  PEQVLVSRGADEGIELLIRAFCEPGKDAILYCP-PTYGMYSVSAETIGVECRTVPT-LD- 131
Query: 247 ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVL 306
              W L+   +  +L+        V+ + V +P NPTGQ++  ++ R +++  + + +V 
Sbjct: 132 --NWQLDLQGISDKLDG-------VKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIV- 181
Query: 307 LADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVT 366
           +ADE Y E  + P+             G+  +   L   +++SK  +   G R G+   T
Sbjct: 182 VADEAYIE--FCPQASLA---------GWLAEYPHLAILRTLSKA-FALAGLRCGF---T 226
Query: 367 GFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKV--GDESYESYCAERDGILSSLAR 424
             + EV   + KV +    S     I A+  +SP  +    E      AER+ ++++L +
Sbjct: 227 LANEEVINLLMKVIAPYPLSTPVADI-AAQALSPQGIVAMRERVAQIIAEREYLIAAL-K 284
Query: 425 RAKTLEDAFNS 435
               +E  F+S
Sbjct: 285 EIPCVEQVFDS 295

>pdb|4DGT|A Chain A, Crystal Structure Of Plp-Bound Putative Aminotransferase From Clostridium Difficile 630 Crystallized With Magnesium Formate Length = 391

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/165 (20%), Positives = 73/165 (44%), Gaps = 7/165 (4%)
Query: 151 ILDQIPGRATGA-YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQL 209
           I+D +  R     Y ++       ++I   +  R  +      +  + G  PA+ +++  
Sbjct: 50  IIDSLKNRLEQEIYGYTTRPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLINE 109
Query: 210 LIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGI 269
           L ++ ND I+   P Y  +++ +  +   L+   L +     LE        E  + K  
Sbjct: 110 LTKA-NDKIMIQEPVYSPFNSVVKNNNRELIISPLQK-----LENGNYIMDYEDIENKIK 163
Query: 270 TVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE 314
            V+  ++ NP NP G+V  ++  + + D C K  + +++DE++ +
Sbjct: 164 DVKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSD 208

>pdb|1FG3|A Chain A, Crystal Structure Of L-Histidinol Phosphate Aminotransferase Complexed With L-Histidinol Length = 356

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 111/251 (44%), Gaps = 35/251 (13%)
Query: 190 PNDIFLTDGASPAVHMMMQLLIRSENDGIL-CPIPQYPLYSASIALHG--GTLVPYYLDE 246
           P  + ++ GA   + ++++       D IL CP P Y  YS S    G     VP  LD 
Sbjct: 75  PEQVLVSRGADEGIELLIRAFCEPGKDAILYCP-PTYGXYSVSAETIGVECRTVPT-LD- 131
Query: 247 ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVL 306
              W L+   +  +L+        V+ + V +P NPTGQ++  ++ R +++  + + +V 
Sbjct: 132 --NWQLDLQGISDKLDG-------VKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIV- 181
Query: 307 LADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVT 366
           +ADE Y E  + P+             G+  +   L   +++SK  +   G R G+   T
Sbjct: 182 VADEAYIE--FCPQASL---------AGWLAEYPHLAILRTLSKA-FALAGLRCGF---T 226
Query: 367 GFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKV--GDESYESYCAERDGILSSLAR 424
             + EV   + KV +    S     I A+  +SP  +    E      AER+ ++++L +
Sbjct: 227 LANEEVINLLXKVIAPYPLSTPVADI-AAQALSPQGIVAXRERVAQIIAEREYLIAAL-K 284
Query: 425 RAKTLEDAFNS 435
               +E  F+S
Sbjct: 285 EIPCVEQVFDS 295

>pdb|1BW0|A Chain A, Crystal Structure Of Tyrosine Aminotransferase From Trypanosoma Cruzi Length = 416

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/270 (20%), Positives = 101/270 (37%), Gaps = 26/270 (9%)
Query: 191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGW 250
           +++ L  G S  + +M    I    D  L P P +P Y      +G  +  Y       W
Sbjct: 105 DNVVLCSGGSHGI-LMAITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDW 163
Query: 251 GLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADE 310
             +  E+++       K    + L+V NP NP G   + ++   IV   ++  L L +DE
Sbjct: 164 EADLDEIRR------LKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDE 217
Query: 311 VYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGG--YMEVTGF 368
           +Y   V+  +    +F  V+      E  +  V     +        + G   Y++  G 
Sbjct: 218 IYAGMVFKGKDPNATFTSVADF----ETTVPRVILGGTAXNLVVPGWRLGWLLYVDPHGN 273
Query: 369 SAEVREQIYKVASV--NLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRA 426
                E + +V  +    C+ +   +  +L+ +P +             D I++ +   A
Sbjct: 274 GPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQE-----------HLDQIVAKIEESA 322
Query: 427 KTLEDAFNSLEGITCNKAEGAMYLFPRIQL 456
             L +      G+      GAMYL  RI L
Sbjct: 323 MYLYNHIGECIGLAPTMPRGAMYLMSRIDL 352

>pdb|3F6T|A Chain A, Crystal Structure Of Aspartate Aminotransferase (E.C. 2.6.1.1) (Yp_194538.1) From Lactobacillus Acidophilus Ncfm At 2.15 A Resolution Length = 533

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 15/147 (10%)
Query: 183 RDGFPADPNDIFLTDGASPAV----HMMMQLLIRSENDGILCPIPQYPLYSASIALHGGT 238
           +D   A+  D+F T+G + A+    H + +  +  + D I    P +  Y     L    
Sbjct: 157 KDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKKGDKIAINEPIFTPYLRIPELKDYE 216
Query: 239 LVPYYLD--EATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIV 296
           LV   L   E   W +E +E++K       K  +++AL+V+NP NPT +        AI 
Sbjct: 217 LVEVDLHSYEKNDWEIEPNEIEK------LKDPSIKALIVVNPTNPTSKEFDTNALNAIK 270
Query: 297 DFCKKE-GLVLLADEVYQENVYVPEKK 322
              +K   L +++DEVY    +VP  K
Sbjct: 271 QAVEKNPKLXIISDEVY--GAFVPNFK 295

>pdb|1YIY|A Chain A, Aedes Aegypti Kynurenine Aminotransferase Length = 429

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/175 (20%), Positives = 77/175 (44%), Gaps = 18/175 (10%)
Query: 153 DQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR 212
           D +  + T  + H + ++ L    +  ++ R   P    ++ +T GA  A++  +Q  + 
Sbjct: 67  DPLANQYTRGFGHPRLVQALSKLYSQLVD-RTINPM--TEVLVTVGAYEALYATIQGHV- 122
Query: 213 SENDGILCPIPQYPLYSASIALHGGT--LVPYYLDEATG------WGLETSEVKKQLEAA 264
            E D ++   P +  Y   +   GG    +P   ++  G      W L+ +E++      
Sbjct: 123 DEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEK 182
Query: 265 KAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVP 319
                  + +++  P NP G+V+       + + CKK  ++ ++DEVY+  V+ P
Sbjct: 183 ------TKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEP 231

>pdb|1YIZ|A Chain A, Aedes Aegypti Kynurenine Aminotrasferase Length = 429

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/175 (20%), Positives = 77/175 (44%), Gaps = 18/175 (10%)
Query: 153 DQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR 212
           D +  + T  + H + ++ L    +  ++ R   P    ++ +T GA  A++  +Q  + 
Sbjct: 67  DPLANQYTRGFGHPRLVQALSKLYSQLVD-RTINPM--TEVLVTVGAYEALYATIQGHV- 122
Query: 213 SENDGILCPIPQYPLYSASIALHGGT--LVPYYLDEATG------WGLETSEVKKQLEAA 264
            E D ++   P +  Y   +   GG    +P   ++  G      W L+ +E++      
Sbjct: 123 DEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEK 182
Query: 265 KAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVP 319
                  + +++  P NP G+V+       + + CKK  ++ ++DEVY+  V+ P
Sbjct: 183 ------TKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEP 231

>pdb|1VP4|A Chain A, Crystal Structure Of A Putative Aminotransferase (Tm1131) From Thermotoga Maritima Msb8 At 1.82 A Resolution Length = 425

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 126/301 (41%), Gaps = 34/301 (11%)
Query: 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPA-DPNDIFLTDGASPAVHMMMQLLIRSENDGI 218
           T  YS ++G   L+  I   +E   G    D +++  T G+  A+ ++ +L +  E+  +
Sbjct: 78  TLQYSTTEGDPVLKQQILKLLERXYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCV 137
Query: 219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRA---LV 275
           L      P Y  +I      L  + +      G + + ++++L      G   +     V
Sbjct: 138 L----DDPAYLGAINAFRQYLANFVVVPLEDDGXDLNVLERKLSEFDKNGKIKQVKFIYV 193
Query: 276 VINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY 335
           V N  NP G   + E ++A+V+  +K  L ++ D+ Y    Y  E     FK     +G 
Sbjct: 194 VSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFK-----IGG 248
Query: 336 GEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILAS 395
            E+ + L +F  V        G R G   V G    +R+ +    S +LCS      LA+
Sbjct: 249 PERVVLLNTFSKVLA-----PGLRIG--XVAGSKEFIRKIVQAKQSADLCSPAITHRLAA 301
Query: 396 LVMSPPKVGDESYESYCAERDGILSSLARRAKT-----LEDAFNSLEGITCNKAEGAMYL 450
             +       E Y+     +  I   L RR +T     LE+ F+ + G+   K+EG +++
Sbjct: 302 RYL-------ERYDLLEQLKPTI--ELYRRKRTVXLNALEEYFSDIPGVKWVKSEGGLFI 352
Query: 451 F 451
           +
Sbjct: 353 W 353

>pdb|4FL0|A Chain A, Crystal Structure Of Ald1 From Arabidopsis Thaliana Length = 456

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 107/442 (24%), Positives = 156/442 (35%), Gaps = 83/442 (18%)
Query: 119 REVLALCDHPSILDRSETQGLFSADSIER-AWQILDQIPGRATG--------AYSHSQGI 169
           RE+  +  HP++    +   L + D+ E    QI   +   A G         Y   QG 
Sbjct: 59  RELEHIEKHPNV----QLISLGTGDTTEPIPEQITSHMSNFAHGLSTVEGYRGYGLEQGN 114
Query: 170 KGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS 229
           K LR  IA     RD      N++F++DGA   +  + QLL+ S N  I    P +P Y 
Sbjct: 115 KTLRKAIAETF-YRD-LHVKSNEVFVSDGAQSDISRL-QLLLGS-NVTIAVQDPTFPAYI 170
Query: 230 ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAK-----------GITVRALVVI- 277
            S  + G T            G    + KK                    +T R  V+  
Sbjct: 171 DSSVIIGQT------------GHFHEKTKKYQNVVYMPCGPNNSFFPDLAMTPRTDVIFF 218
Query: 278 -NPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG 336
            +P NPTG V + +    +VDF K  G +++ D  Y    ++ +    S  ++    G  
Sbjct: 219 CSPNNPTGYVASRKQLHQLVDFAKTNGSIIIFDSAYA--AFIEDGSPRSIYEIP---GAR 273
Query: 337 EKDISLVSFQSVSKGYYGECGKRGGY-------MEVTGFSAEVREQIYKVASVNLCSNIS 389
           E  I + SF      + G  G R G+       +   GF            S N  SNI+
Sbjct: 274 EVAIEVSSFSK----FAGFTGVRLGWSIIPDELLYSNGFPIINDFHRIVTTSFNGASNIA 329
Query: 390 GQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMY 449
                + + S       S  +Y  E            K L D   SL G+       A Y
Sbjct: 330 QAGGLACLSSGGLKEIRSVNNYYKE----------NRKILMDTLVSL-GLKVYGGVNAPY 378
Query: 450 LFPRIQLPXXXXXXXXXXXTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQ 509
           L+   +                D F    +L  T I+ VPGSGFG   G  + R +   +
Sbjct: 379 LWVHFKGSKSW-----------DVF--NEILENTHIITVPGSGFGP-GGEEYLRISGFGR 424
Query: 510 EDKIPAIVTRLTDFHKNFMDKF 531
            D I     RL +F       F
Sbjct: 425 RDHIVEASKRLQNFFNTRTKHF 446

>pdb|3QGU|A Chain A, L,L-Diaminopimelate Aminotransferase From Chalmydomonas Reinhardtii Length = 449

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 82/212 (38%), Gaps = 31/212 (14%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y   QG   LR+ +A+      G  AD  +IF++DG+   +   +Q++  S+   +    
Sbjct: 107 YGAEQGQGALREAVASTFYGHAGRAAD--EIFISDGSKCDI-ARIQMMFGSKPT-VAVQD 162
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVK---------KQLEAAKAKGITVRA 273
           P YP+Y  +  + G T       +  G G +  E             L  AK   I    
Sbjct: 163 PSYPVYVDTSVMMGMT------GDHNGTGFDGIEYMVCNPDNHFFPDLSKAKRTDI---- 212
Query: 274 LVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSM 333
           +   +P NPTG          +V+F +K G +L+ D  Y   +  P+      K +    
Sbjct: 213 IFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCP----KTIYEIP 268
Query: 334 GYGEKDISLVSFQSVSKGYYGECGKRGGYMEV 365
           G  E  I   SF      Y G  G R G+  V
Sbjct: 269 GADEVAIETCSFSK----YAGFTGVRLGWTVV 296

>pdb|1LKC|A Chain A, Crystal Structure Of L-Threonine-O-3-Phosphate Decarboxylase From Salmonella Enterica Length = 364

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 74/178 (41%), Gaps = 33/178 (18%)
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT--VRALVVINPG 280
           P +  Y  ++A  G  +  + L EA GW         QL  A  + +T  +  L +  P 
Sbjct: 106 PGFAEYGRALAQSGCEIRRWSLREADGW---------QLTDAILEALTPDLDCLFLCTPN 156
Query: 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVY-----QENVYVPEKKFHSFKKVSRSMGY 335
           NPTG +      +AI D CK   + L+ DE +      E  ++P  K +    V RS+  
Sbjct: 157 NPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSL-- 214
Query: 336 GEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA-SVNLCSNISGQI 392
                           +Y   G R GY+  +  +A  R +  ++  SVN  + ++G++
Sbjct: 215 --------------TKFYAIPGLRLGYLVNSDDAAMARMRRQQMPWSVNALAALAGEV 258

>pdb|2O0R|A Chain A, The Three-Dimensional Structure Of N-Succinyldiaminopimelate Aminotransferase From Mycobacterium Tuberculosis Length = 411

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 9/131 (6%)
Query: 189 DP-NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYL-DE 246
           DP  ++ +T GA+ A+   +  L+   ++ +L   P Y  YS  +A+ G   V   L  +
Sbjct: 84  DPETEVLVTVGATEAIAAAVLGLVEPGSEVLLIE-PFYDSYSPVVAMAGAHRVTVPLVPD 142
Query: 247 ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVL 306
             G+ L+   +++ +          RAL++ +P NPTG VL+     AI +      LV+
Sbjct: 143 GRGFALDADALRRAVTP------RTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVV 196
Query: 307 LADEVYQENVY 317
           + DEVY+  V+
Sbjct: 197 ITDEVYEHLVF 207

>pdb|2EGY|A Chain A, Crystal Structure Of Lysn, Alpha-Aminoadipate Aminotransferase (Substrate Free Form), From Thermus Thermophilus Hb27 Length = 397

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 102/234 (43%), Gaps = 21/234 (8%)
Query: 119 REVLALCDHPSILDRS---ETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDT 175
           RE+L L   P IL  +       LF  +    A   + +  G     YS ++G   LR  
Sbjct: 23  RELLKLTQRPGILSFAGGLPAPELFPKEEAAEAAARILREKGEVALQYSPTEGYAPLRAF 82
Query: 176 IAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALH 235
           +A  I  R      P ++ +T G+  A+ ++ ++ +  E   +L   P Y     +  L 
Sbjct: 83  VAEWIGVR------PEEVLITTGSQQALDLVGKVFL-DEGSPVLLEAPSYMGAIQAFRLQ 135
Query: 236 GGTLVPYYLDEATGW-GLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRA 294
           G    P +L    G  G +   +++ L+  + + + +    + +  NPTG +     ++ 
Sbjct: 136 G----PRFLTVPAGEEGPDLDALEEVLKRERPRFLYL----IPSFQNPTGGLTPLPARKR 187
Query: 295 IVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSV 348
           ++    + GLV++ D+ Y+E +Y  E +  S  +++R  GY    I L SF  V
Sbjct: 188 LLQMVMERGLVVVEDDAYRE-LYFGEARLPSLFELAREAGY-PGVIYLGSFSKV 239

>pdb|3DZZ|A Chain A, Crystal Structure Of A Putative Plp-Dependent Aminotransferase (Lbul_1103) From Lactobacillus Delbrueckii Subsp. At 1.61 A Resolution Length = 391

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 60/127 (47%), Gaps = 7/127 (5%)
Query: 195 LTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYL-DEATGWGLE 253
              G  PA+   ++    S  D IL   P Y  + + I  +G  ++   L  E + + + 
Sbjct: 90  FASGVVPAISAXVRQFT-SPGDQILVQEPVYNXFYSVIEGNGRRVISSDLIYENSKYSVN 148
Query: 254 TSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQ 313
            ++++++L        +VR  V  NP NP G   +EE  + I + C K  ++L++DE++ 
Sbjct: 149 WADLEEKLATP-----SVRXXVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHG 203
Query: 314 ENVYVPE 320
           + V   E
Sbjct: 204 DLVLTDE 210

>pdb|3FTB|A Chain A, The Crystal Structure Of The Histidinol-Phosphate Aminotransferase From Clostridium Acetobutylicum Length = 361

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/131 (22%), Positives = 61/131 (46%), Gaps = 14/131 (10%)
Query: 193 IFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGL 252
           I L +GAS  + + + L      + IL  +P Y  Y  +   HG ++V  YLDE     +
Sbjct: 81  IVLGNGASEIIELSISLF-----EKILIIVPSYAEYEINAKKHGVSVVFSYLDE--NMCI 133
Query: 253 ETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVY 312
           +  ++  +++        V ++++ NP NP G ++ +E    ++   +++   ++ DE +
Sbjct: 134 DYEDIISKID-------DVDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAF 186
Query: 313 QENVYVPEKKF 323
            E    P   F
Sbjct: 187 IEFTGDPSSSF 197

>pdb|3EIA|A Chain A, Crystal Structure Of K270q Variant Of Ll-Diaminopimelate Aminotransferase From Arabidopsis Thaliana Complexed With L-Glu: External Aldimine Form Length = 432

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 62/163 (38%), Gaps = 29/163 (17%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y   QG K LR  IA       G   D  D+F++DGA   +  +  +     N  I    
Sbjct: 94  YGAEQGAKPLRAAIAKTFYGGLGIGDD--DVFVSDGAKCDISRLQVMF--GSNVTIAVQD 149
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQ-----LEAAKAKGI-----TVR 272
           P YP Y  S  + G T            G   ++V+K      +      G      TV 
Sbjct: 150 PSYPAYVDSSVIMGQT------------GQFNTDVQKYGNIEYMRCTPENGFFPDLSTVG 197
Query: 273 ALVVI---NPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVY 312
              +I   +P NPTG     E    +V+F KK G +++ D  Y
Sbjct: 198 RTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAY 240

>pdb|3EI8|A Chain A, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate Aminotransferase From Arabidopsis Thaliana Complexed With Ll-Dap: External Aldimine Form Length = 432

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 62/163 (38%), Gaps = 29/163 (17%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y   QG K LR  IA       G   D  D+F++DGA   +  +  +     N  I    
Sbjct: 94  YGAEQGAKPLRAAIAKTFYGGLGIGDD--DVFVSDGAKCDISRLQVMF--GSNVTIAVQD 149
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQ-----LEAAKAKGI-----TVR 272
           P YP Y  S  + G T            G   ++V+K      +      G      TV 
Sbjct: 150 PSYPAYVDSSVIMGQT------------GQFNTDVQKYGNIEYMRCTPENGFFPDLSTVG 197
Query: 273 ALVVI---NPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVY 312
              +I   +P NPTG     E    +V+F KK G +++ D  Y
Sbjct: 198 RTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAY 240

>pdb|2Z1Z|A Chain A, Crystal Structure Of Ll-diaminopimelate Aminotransferase From Arabidopsis Thaliana Complexed With L-malate Ion Length = 432

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 62/163 (38%), Gaps = 29/163 (17%)
Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y   QG K LR  IA       G   D  D+F++DGA   +  +  +     N  I    
Sbjct: 94  YGAEQGAKPLRAAIAKTFYGGLGIGDD--DVFVSDGAKCDISRLQVMF--GSNVTIAVQD 149
Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQ-----LEAAKAKGI-----TVR 272
           P YP Y  S  + G T            G   ++V+K      +      G      TV 
Sbjct: 150 PSYPAYVDSSVIMGQT------------GQFNTDVQKYGNIEYMRCTPENGFFPDLSTVG 197
Query: 273 ALVVI---NPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVY 312
              +I   +P NPTG     E    +V+F KK G +++ D  Y
Sbjct: 198 RTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAY 240

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	533
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	0.0
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	0.0
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	2e-69
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	6e-66
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	2e-65
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	2e-50
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	1e-48
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	3e-48
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	3e-46
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	1e-45
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	2e-44
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	6e-40
3ele_A	398	Amino transferase; RER070207001803, structural gen	7e-39
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	9e-39
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	4e-38
3nra_A	407	Aspartate aminotransferase; structural genomics, j	5e-38
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	6e-38
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	2e-37
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	2e-36
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	2e-35
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	1e-34
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	7e-34
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	1e-33
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	2e-33
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	2e-33
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	5e-33
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	4e-32
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	4e-32
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	9e-32
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	1e-31
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	7e-31
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	2e-30
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	2e-30
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	5e-29
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	5e-29
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	1e-28
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	5e-28
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	5e-27
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	1e-26
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	6e-26
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	2e-24
1vp4_A	425	Aminotransferase, putative; structural genomics, j	3e-24
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	7e-24
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	1e-23
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	4e-18
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	1e-17
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	2e-16
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	2e-15
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	4e-15
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	8e-15
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	1e-14
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	3e-14
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	3e-14
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	5e-14
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	5e-14
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	1e-13
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	3e-13
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	1e-12
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	4e-12
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	6e-10
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	1e-09
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	9e-09
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	7e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	1e-06
3rq1_A	418	Aminotransferase class I and II; structural genomi	2e-06
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	1e-05
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	1e-05
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	1e-05
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	1e-04
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	2e-04
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	2e-04
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	3e-04
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	3e-04
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	4e-04

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} Length = 500

 Score =  705 bits (1822), Expect = 0.0
 Identities = 377/491 (76%), Positives = 426/491 (86%)

Query: 43  PSSSSMAPTSSPAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYC 102
              +      +  + VD+LNPKVLKCEYAVRGEIV  AQRLQ++L+T PGS  FDEILYC
Sbjct: 10  HHGTDDDDKMAATVAVDNLNPKVLKCEYAVRGEIVIHAQRLQEQLKTQPGSLPFDEILYC 69

Query: 103 NIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGA 162
           NIGNPQSLGQQP+TFFREVLALCDHP +L R E + LFSADSI RA QIL  IPGRATGA
Sbjct: 70  NIGNPQSLGQQPVTFFREVLALCDHPDLLQREEIKTLFSADSISRAKQILAMIPGRATGA 129

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           YSHSQGI GLRD IA+GI +RDGFPA+ +DIFLTDGASP VH+MMQLLIR+E DGIL PI
Sbjct: 130 YSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPI 189

Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
           PQYPLYSASIALHGG LVPYYL+E+TGWGLETS+VKKQLE A+++GI VRALVVINPGNP
Sbjct: 190 PQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNP 249

Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL 342
           TGQVLAEENQ  IV FCK EGLVLLADEVYQEN+YV  KKFHSFKK+ RS+GYGE+D+ L
Sbjct: 250 TGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPL 309

Query: 343 VSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPK 402
           VS+QSVSKGYYGECGKRGGY E+TGFSA VREQIYK+ASVNLCSNI+GQILASLVM+PPK
Sbjct: 310 VSYQSVSKGYYGECGKRGGYFEITGFSAPVREQIYKIASVNLCSNITGQILASLVMNPPK 369

Query: 403 VGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIK 462
             DESY SY AE+DGIL+SLARRAK LE AFN LEGITCN+AEGAMY+FP+I LP+KAI+
Sbjct: 370 ASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCNEAEGAMYVFPQICLPQKAIE 429

Query: 463 AAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTD 522
           AA+A    PDAFY  RLL +TGIV+VPGSGFGQVPGTWHFRCTILPQEDKIPA+++R T 
Sbjct: 430 AAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAVISRFTV 489

Query: 523 FHKNFMDKFRN 533
           FH+ FM ++R+
Sbjct: 490 FHEAFMSEYRD 500

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} Length = 498

 Score =  653 bits (1685), Expect = 0.0
 Identities = 226/495 (45%), Positives = 319/495 (64%), Gaps = 11/495 (2%)

Query: 42  SPSSSSMAPTSSPAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILY 101
           S            ++T++S+NP+V   EYAVRG IV  A  ++ ELQ       F E++ 
Sbjct: 9   SGVDLGTENLYFQSMTLESMNPQVKAVEYAVRGPIVLKAGEIELELQRGI-KKPFTEVIR 67

Query: 102 CNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATG 161
            NIG+ Q++GQQPITF R+V+ALC +P++LD       F  D+ +RA +IL    G + G
Sbjct: 68  ANIGDAQAMGQQPITFLRQVMALCTYPNLLDSPS----FPEDAKKRARRILQACGGNSLG 123

Query: 162 AYSHSQGIKGLRDTIAAGIEARDG-FPADPNDIFLTDGASPAVHMMMQLLIR---SENDG 217
           +YS SQG+  +R+ +AA I  RDG  PADP++I+LT GAS  +  ++++L+        G
Sbjct: 124 SYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTG 183

Query: 218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI 277
           ++ PIPQYPLYSA I+      V YYLDE   W L  +E+++ ++ AK      + L +I
Sbjct: 184 VMIPIPQYPLYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAK-DHCDPKVLCII 242

Query: 278 NPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG- 336
           NPGNPTGQV + +    ++ F  +E L LLADEVYQ+NVY P+ +FHSFKKV   MG   
Sbjct: 243 NPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEY 302

Query: 337 EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASL 396
             ++ L SF S SKGY GECG RGGYMEV     E++ Q+ K+ SV LC  +SGQ    +
Sbjct: 303 SSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLSVRLCPPVSGQAAMDI 362

Query: 397 VMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQL 456
           V++PP  G+ES+E +  E++ +L +LA++AK  ED FN + GI CN  +GAMY FPRI +
Sbjct: 363 VVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGAMYAFPRIFI 422

Query: 457 PEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAI 516
           P KA++AA+A +  PD FYC +LL  TGI +VPGSGFGQ  GT+HFR TILP  +K+  +
Sbjct: 423 PAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPVEKLKTV 482

Query: 517 VTRLTDFHKNFMDKF 531
           + ++ DFH NF++K+
Sbjct: 483 LQKVKDFHINFLEKY 497

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* Length = 427

 Score =  228 bits (583), Expect = 2e-69
 Identities = 98/494 (19%), Positives = 179/494 (36%), Gaps = 92/494 (18%)

Query: 42  SPSSSSMAPTSSPAITVDSLNP--KVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEI 99
             S   +   +    ++ S+ P     K    +R  IV   +        NP       +
Sbjct: 7   HSSGVDLGTENLYFQSMWSVRPSDMAKKTFNPIRA-IVDNMKVKP-----NPNK----TM 56

Query: 100 LYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIP-GR 158
           +  +IG+P   G                             +   + +A  + D +  G+
Sbjct: 57  ISLSIGDPTVFG-----NLP---------------------TDPEVTQA--MKDALDSGK 88

Query: 159 ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI 218
             G Y+ S G    R+ IA+        P +  D+ LT G S A+ + + +L       I
Sbjct: 89  YNG-YAPSIGFLSSREEIASYYH-CPEAPLEAKDVILTSGCSQAIDLCLAVLAN-PGQNI 145

Query: 219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT--VRALVV 276
           L P P + LY       G  +  Y L     W +   +   QLE      I      L+V
Sbjct: 146 LVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEI-DLK---QLEYL----IDEKTACLIV 197

Query: 277 INPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG 336
            NP NP G V ++ + + I+    ++ + +LADE+Y + V+  + K+     +S      
Sbjct: 198 NNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVF-SDCKYEPLATLS------ 250

Query: 337 EKDISLVSFQSVSKGYYGECGKRGGYMEVTG----FSAEVREQIYKVASVNLCSNISGQ- 391
             D+ ++S   ++K +    G R G++ +      F  E+R+ + K++   L      Q 
Sbjct: 251 -TDVPILSCGGLAKRWL-VPGWRLGWILIHDRRDIFGNEIRDGLVKLSQRILGPCTIVQG 308

Query: 392 -ILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYL 450
            + + L  +P     E Y +  +        L   A     A  ++ G+   +  GAMYL
Sbjct: 309 ALKSILCRTP----GEFYHNTLSF-------LKSNADLCYGALAAIPGLRPVRPSGAMYL 357

Query: 451 FPRIQLPE-KAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQ 509
              I++      +            +  RL+    +  +P + F   P     R  I   
Sbjct: 358 MVGIEMEHFPEFENDVE--------FTERLVAEQSVHCLPATCFE-YPN--FIRVVITVP 406

Query: 510 EDKIPAIVTRLTDF 523
           E  +    +R+ +F
Sbjct: 407 EVMMLEACSRIQEF 420

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 Length = 406

 Score =  218 bits (557), Expect = 6e-66
 Identities = 111/480 (23%), Positives = 192/480 (40%), Gaps = 99/480 (20%)

Query: 64  KVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLA 123
           + L  EYA+R  +V  A+ L+++           +++  NIG+P                
Sbjct: 15  RALSVEYAIRD-VVLPARELEKKGI---------KVIRLNIGDPVKFD------------ 52

Query: 124 LCDHPSILDRSETQGLFSA-DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEA 182
                           F   + ++ A      I       Y  S+G+  LR  I    + 
Sbjct: 53  ----------------FQPPEHMKEA--YCKAIK-EGHNYYGDSEGLPELRKAIVEREKR 93

Query: 183 RDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDG--ILCPIPQYPLYSASIALHGGTLV 240
           ++G    P+D+ +T   + A+ ++   L+   + G  IL P P YP Y+  +  +GG  V
Sbjct: 94  KNGVDITPDDVRVTAAVTEALQLIFGALL---DPGDEILVPGPSYPPYTGLVKFYGGKPV 150

Query: 241 PYYLDEATGWGLETSEVKKQLEAAKAKGIT--VRALVVINPGNPTGQVLAEENQRAIVDF 298
            Y   E   W     +    +       IT   +A+ VINP NPTG +  ++    I++ 
Sbjct: 151 EYRTIEEEDWQP-DID---DIRKK----ITDRTKAIAVINPNNPTGALYDKKTLEEILNI 202

Query: 299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGK 358
             +  + +++DE+Y    Y  E +  S   ++       KD+ ++    +SK Y+   G 
Sbjct: 203 AGEYEIPVISDEIYDLMTY--EGEHISPGSLT-------KDVPVIVMNGLSKVYF-ATGW 252

Query: 359 RGGYMEVTG---FSAEVREQIYKVASVNLCSNISGQ--ILASLVMSPPKVGDESYESYCA 413
           R GYM         +EVRE I ++A + LC N   Q   +A L         +  + Y  
Sbjct: 253 RLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGL-----TGPMDYLKEYMK 307

Query: 414 ERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDA 473
           +       L  R   +    N + GI+  K +GA Y+FP+I+      K  +        
Sbjct: 308 K-------LKERRDYIYKRLNEIPGISTTKPQGAFYIFPKIE--VGPWKNDKE------- 351

Query: 474 FYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKFRN 533
            +   +L+   ++ V GSGFG+  G  HFR   LP  + +   + R     + FM +   
Sbjct: 352 -FVLDVLHNAHVLFVHGSGFGE-YGAGHFRAVFLPPIEILEEAMDRF----EKFMKERLK 405

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 Length = 416

 Score =  217 bits (555), Expect = 2e-65
 Identities = 75/390 (19%), Positives = 133/390 (34%), Gaps = 55/390 (14%)

Query: 157 GRATGAYSHSQGIKGLRDTIAA-----GIEARD-GFPADPNDIFLTDGASPAVHMMMQLL 210
               G Y  + G    R+ +A       +   +       +++ L  G S  + M +  +
Sbjct: 66  QECNG-YFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAI 124

Query: 211 IRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT 270
                D  L P P +P Y      +G  +  Y       W     +   ++         
Sbjct: 125 CD-AGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEA-DLD---EIRRL----KD 175

Query: 271 --VRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKK 328
              + L+V NP NP G   + ++   IV   ++  L L +DE+Y   V+  +    +F  
Sbjct: 176 DKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFT- 234

Query: 329 VSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYM---EVTGFSAEVREQIYKVASVNLC 385
              S+   E  +  V     +K      G R G++   +  G      E + +V  +   
Sbjct: 235 ---SVADFETTVPRVILGGTAKNLV-VPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCG 290

Query: 386 SNISGQ--ILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNK 443
                Q  +  +L+ +P     E  +   A+       +   A  L +      G+    
Sbjct: 291 PCTVVQAALGEALLNTP----QEHLDQIVAK-------IEESAMYLYNHIGECIGLAPTM 339

Query: 444 AEGAMYLFPRIQLPE-KAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHF 502
             GAMYL  RI L + + IK            +  +LL    + ++PG+ F   PG    
Sbjct: 340 PRGAMYLMSRIDLEKYRDIKTDVE--------FFEKLLEEENVQVLPGTIFH-APG--FT 388

Query: 503 RCTILPQEDKIPAIVTRLTDFHKNFMDKFR 532
           R T     +     V R+    K F  +  
Sbjct: 389 RLTTTRPVEVYREAVERI----KAFCQRHA 414

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* Length = 428

 Score =  177 bits (452), Expect = 2e-50
 Identities = 84/379 (22%), Positives = 157/379 (41%), Gaps = 38/379 (10%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPA--DPNDIFLTDGASPAVHMMMQLLIRSENDGILC 220
           +    G+   R  IA  +E   G     DP  + +  GA+ A   ++  L     D  L 
Sbjct: 79  FQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLA-DPGDAFLV 137

Query: 221 PIPQYPLYSASIALHGGT-LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP 279
           P P YP ++  +    G  L+P + + +  + + +  VK+  E A+   I V+ L++ NP
Sbjct: 138 PSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNP 197

Query: 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKD 339
            NP G  L ++  ++++ F  +  + L+ DE+Y   V+    +F S  ++         +
Sbjct: 198 SNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVF-DTPQFVSIAEILDEQEMTYCN 256

Query: 340 ISLV-SFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVM 398
             LV    S+SK   G  G R G   +  F+ +V     K++S  L S  +   LA++  
Sbjct: 257 KDLVHIVYSLSKD-MGLPGFRVGI--IYSFNDDVVNCARKMSSFGLVSTQTQYFLAAM-- 311

Query: 399 SPPKVGDESY-ESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQ-- 455
               + DE + +++  E       L +R K   +    + GI C K    ++ +  ++  
Sbjct: 312 ----LSDEKFVDNFLRES---AMRLGKRHKHFTNGLEVV-GIKCLKNNAGLFCWMDLRPL 363

Query: 456 LPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFG-QVPGTWHFRCTI-LPQEDKI 513
           L E    +  +          R ++N   + + PGS F  Q PG   FR       +  +
Sbjct: 364 LRESTFDSEMS--------LWRVIINDVKLNVSPGSSFECQEPG--WFRVCFANMDDGTV 413

Query: 514 PAIVTRLTDFHKNFMDKFR 532
              + R+    + F+   +
Sbjct: 414 DIALARI----RRFVGVEK 428

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* Length = 435

 Score =  173 bits (440), Expect = 1e-48
 Identities = 79/384 (20%), Positives = 154/384 (40%), Gaps = 44/384 (11%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPA--DPNDIFLTDGASPAVHMMMQLLIRSENDGILC 220
           +    G+   +  +   +    G     DPN + LT GA+ A    +  L     + +L 
Sbjct: 82  FQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLA-DPGEAVLI 140

Query: 221 PIPQYPLYSASIALHGG-TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP 279
           P P YP +   +    G  +VP +   + G+ +  + +++  + A+ + + V+ ++V NP
Sbjct: 141 PTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNP 200

Query: 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKD 339
            NP G  +       ++ F + +G+ L++DE+Y    +     F S  +V +     E  
Sbjct: 201 SNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAF-SSPSFISVMEVLKDRNCDENS 259

Query: 340 IS-----LVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILA 394
                  +V   S+SK   G  G R G   +      V     K++S  L S+ +  +L+
Sbjct: 260 EVWQRVHVVY--SLSKD-LGLPGFRVGA--IYSNDDMVVAAATKMSSFGLVSSQTQHLLS 314

Query: 395 SLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRI 454
           +++    K   ++Y +   +R      L +R K L        GI+C      ++ +  +
Sbjct: 315 AMLSD--KKLTKNYIAENHKR------LKQRQKKLVSGLQKS-GISCLNGNAGLFCWVDM 365

Query: 455 Q--LPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFG-QVPGTWHFRCT--ILPQ 509
           +  L     +A             ++++    + + PGS      PG   FR     LP 
Sbjct: 366 RHLLRSNTFEAEME--------LWKKIVYEVHLNISPGSSCHCTEPG--WFRVCFANLP- 414

Query: 510 EDKIPAIVTRLTDFHKNFMDKFRN 533
           E  +   + RL    K F+ ++ N
Sbjct: 415 ERTLDLAMQRL----KAFVGEYYN 434

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} Length = 391

 Score =  170 bits (434), Expect = 3e-48
 Identities = 66/344 (19%), Positives = 114/344 (33%), Gaps = 50/344 (14%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y+ + G+  LR  IA       G   DP  + +T G+S    +    L     D +    
Sbjct: 64  YTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTALF-DSGDRVGIGA 122

Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
           P YP Y   +   G   V                           G     L+V +P NP
Sbjct: 123 PGYPSYRQILRALGLVPVDLPTAPENRLQP-VPA---DFAGLDLAG-----LMVASPANP 173

Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL 342
           TG +L      A+++  + +G   ++DE+Y    Y  E K  +       +   ++   +
Sbjct: 174 TGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEY--EAKAVTA------LELTDECYVI 225

Query: 343 VSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPP 401
            SF   SK Y+   G R G+M V     +    + ++A  + +C+  + Q+ A   +   
Sbjct: 226 NSF---SK-YFSMTGWRVGWMVV---PEDQVRVVERIAQNMFICAPHASQVAALAALDCD 278

Query: 402 KVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAI 461
                      AE    L       K + +             +GA Y++  +       
Sbjct: 279 -----------AELQANLDVYKANRKLMLERLPKAGFTRIAPPDGAFYVYADV------- 320

Query: 462 KAAEAEKTVPDAF-YCRRLLNATGIVLVPGSGFGQVPGTWHFRC 504
                     D+  +   +L   G+ + PG  F    G    R 
Sbjct: 321 -----SDLTDDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRF 359

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 Length = 409

 Score =  166 bits (422), Expect = 3e-46
 Identities = 89/383 (23%), Positives = 150/383 (39%), Gaps = 63/383 (16%)

Query: 162 AYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCP 221
            YSHS GI  LR+  A+  + R      P ++ +T+G S A+     ++  +  D IL  
Sbjct: 74  YYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIA-NPGDEILVL 132

Query: 222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT--VRALVVINP 279
            P Y  Y+A   + G  L+P       G+ +      + LE+     I    + +V+ NP
Sbjct: 133 EPFYANYNAFAKIAGVKLIPVTRRMEEGFAI-----PQNLESF----INERTKGIVLSNP 183

Query: 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKD 339
            NPTG V  ++  R +V+  ++ GL L+ DEVY E V+    +F S   +       E D
Sbjct: 184 CNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVF--RGEFASALSI-------ESD 234

Query: 340 ISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQI--LASLV 397
             +V   SVSK  +  CG R G + +T  + E+     K+A   L   +  QI  +  L 
Sbjct: 235 KVVV-IDSVSKK-FSACGARVGCL-ITR-NEELISHAMKLAQGRLAPPLLEQIGSVGLL- 289

Query: 398 MSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLP 457
                + D  ++               R +T+             K  GA Y+   +   
Sbjct: 290 ----NLDDSFFDFVRETYR-------ERVETVLKKLEEHGLKRFTKPSGAFYITAEL--- 335

Query: 458 EKAIKAAEAEKTVPDAFYCRRLL-----NATGIVLVPGSGFGQVPGTW--HFRCTILPQE 510
              ++ AE         + R +L     +    ++ P  GF   PG      R   + ++
Sbjct: 336 --PVEDAEE--------FARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEK 385

Query: 511 DKIPAIVTRLTDFHKNFMDKFRN 533
           D +   +  L       +  F +
Sbjct: 386 DLLSRAIDVL----MEGLKMFCS 404

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* Length = 375

 Score =  163 bits (414), Expect = 1e-45
 Identities = 66/375 (17%), Positives = 134/375 (35%), Gaps = 64/375 (17%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y   +G    + +++            P  I  T+GA+ A  +++  LI    D ++   
Sbjct: 59  YGWIEGSPAFKKSVSQLYTG-----VKPEQILQTNGATGANLLVLYSLI-EPGDHVISLY 112

Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT--VRALVVINPG 280
           P Y          G  +  + ++E  GW     E   +L       I    + + + N  
Sbjct: 113 PTYQQLYDIPKSLGAEVDLWQIEEENGWLP-DLE---KLRQL----IRPTTKMICINNAN 164

Query: 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDI 340
           NPTG V+       +V+   + G  +L+DEVY+    +      S           +K I
Sbjct: 165 NPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSELD---VPSII------EVYDKGI 215

Query: 341 SLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMS 399
           ++    S+SK  Y   G R G+  V   + +V + +        +C+ +   ++A L ++
Sbjct: 216 AV---NSLSKT-YSLPGIRIGW--VAA-NHQVTDILRDYRDYTMICAGVFDDLVAQLALA 268

Query: 400 -PPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPE 458
              ++ + +                     L+        ++  +       F +I +  
Sbjct: 269 HYQEILERNRHIL-----------EENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDM 317

Query: 459 KAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVT 518
                        + F C +LL   G++LVPG+ F    G  + R     +++ +   + 
Sbjct: 318 PM-----------EDF-CLQLLQEHGVLLVPGNRFE-RDG--YVRLGFACEQETLIKGLE 362

Query: 519 RLTDFHKNFMDKFRN 533
           +L      F+ +F  
Sbjct: 363 KL----SQFLRRFDK 373

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} Length = 437

 Score =  161 bits (410), Expect = 2e-44
 Identities = 53/395 (13%), Positives = 111/395 (28%), Gaps = 61/395 (15%)

Query: 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS---END 216
              Y +  G+  L+   +   +              T G+     +   +  R+      
Sbjct: 75  ASIYPNLDGLPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFVSFLVANRTHKNREY 134

Query: 217 GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT--VRAL 274
           G L   P + L      + G     + L E  G  L     +K          T    ++
Sbjct: 135 GTLFIDPGFNLNKLQCRILGQKFESFDLFEYRGEKLR----EKLESYL----QTGQFCSI 186

Query: 275 VVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG 334
           +  NP NPT Q + +E  R I +   K  ++++ D  Y    +  +   H  + + +   
Sbjct: 187 IYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFR-KDYSHPGEPLYQPSV 245

Query: 335 YGEKDISLVSFQSVSKGY------------------YGECGKRGGYMEVTGFSAEVREQI 376
               D  ++   S SK +                           +  +    A     +
Sbjct: 246 ANYTDNYIL-ALSSSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSAL 304

Query: 377 YKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL 436
           Y ++S    +  S Q   + ++     G+ ++     E         R+A+ ++  F   
Sbjct: 305 YALSS---GATHSAQWGMAAMLKACNDGEYNFRDSVIEYG-------RKARIMKKMFLDN 354

Query: 437 -----EGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGS 491
                     N+     + F        +                 + +      +   +
Sbjct: 355 GFNIVYDKDGNEPLADGFYFTVGYKGMDS-----------SKL-IEKFVRYGMCAITLKT 402

Query: 492 GFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKN 526
              +        CT L  E + P +  RL   +  
Sbjct: 403 TGSK-RNEAMRICTSLLPESQFPDLEKRLQMLNAE 436

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} Length = 370

 Score =  147 bits (374), Expect = 6e-40
 Identities = 78/345 (22%), Positives = 131/345 (37%), Gaps = 61/345 (17%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y+ S+GI  LR+ I+   + +      P++I +T G+S  +   +  +I  + D +L   
Sbjct: 62  YTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFALSSII-DDGDEVLIQN 120

Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT--VRALVVINPG 280
           P YP Y   I   G   V                    LE A    ++   +A+++ +P 
Sbjct: 121 PCYPCYKNFIRFLGAKPVFCDFTVE------------SLEEA----LSDKTKAIIINSPS 164

Query: 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDI 340
           NP G+V+  E    I +F  +    +++DE+Y   VY  E K +S  +          + 
Sbjct: 165 NPLGEVIDRE----IYEFAYENIPYIISDEIYNGLVY--EGKCYSAIEFD-----ENLEK 213

Query: 341 SLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMS 399
           +++     SK  Y   G R GY+     + E+ E I K+   + + +    Q  A     
Sbjct: 214 TIL-INGFSK-LYAMTGWRIGYV---ISNDEIIEAILKLQQNLFISAPTISQYAALKAFE 268

Query: 400 PPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEK 459
                +    S   E D       RR + +        G   N   GA Y+FP I     
Sbjct: 269 KE--TEREINSMIKEFD-------RRRRLVLKYVKDF-GWEVNNPIGAYYVFPNI----- 313

Query: 460 AIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRC 504
                   +   +  +  +LL    + L PG GFG   G  + R 
Sbjct: 314 -------GEDGRE--FAYKLLKEKFVALTPGIGFGS-KGKNYIRI 348

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} Length = 398

 Score =  145 bits (368), Expect = 7e-39
 Identities = 81/399 (20%), Positives = 147/399 (36%), Gaps = 68/399 (17%)

Query: 146 ERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHM 205
           +   +++      A   Y+ +QG    R  IA  +    G   + +++++T GA+ ++ +
Sbjct: 55  DTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSI 114

Query: 206 MMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVK-KQLEAA 264
             + L     D  +   P +P Y   +   G  LV    D       E  ++    LE  
Sbjct: 115 CFRALTSDAYDEFITIAPYFPEYKVFVNAAGARLVEVPADT------EHFQIDFDALEER 168

Query: 265 KAKGIT--VRALVVINPGNPTGQVLAEENQRAIVDFCKK------EGLVLLADEVYQENV 316
               I    R +++ +P NP+G V +EE  + + D  +K        + ++ADE Y+E V
Sbjct: 169 ----INAHTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIV 224

Query: 317 YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYY--GECGKRGGYMEVTGFSAEVRE 374
           Y          KV     Y +  +   S+   SK     GE   R GY+ V     EV +
Sbjct: 225 Y-------DGIKVPFVTKYYDNTLVCYSY---SKSLSLPGE---RIGYVLV---PDEVYD 268

Query: 375 QIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFN 434
           +    A+V       G + A  +    K+  +      A  D  +++       L +   
Sbjct: 269 KAELYAAVCGAGRALGYVCAPSLFQ--KMIVKCQG---ATGD--INAYKENRDLLYEGLT 321

Query: 435 SLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAF-YCRRLLNATGIVLVPGSGF 493
            + G  C K +GA Y+F +                  D+  +C +      +++V   GF
Sbjct: 322 RI-GYHCFKPDGAFYMFVKA--------------LEDDSNAFCEKAKEE-DVLIVAADGF 365

Query: 494 GQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKFR 532
           G  PG    R +     + I   +       +    K+ 
Sbjct: 366 G-CPG--WVRISYCVDREMIKHSMPAF----EKIYKKYN 397

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} Length = 412

 Score =  145 bits (368), Expect = 9e-39
 Identities = 79/375 (21%), Positives = 142/375 (37%), Gaps = 51/375 (13%)

Query: 159 ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPND-IFLTDGASPA-VHMMMQLLIRSEND 216
            T  YS S+GI  LR  I+     R     DP     +T G+     H+M+  L     D
Sbjct: 67  DTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATL--DHGD 124

Query: 217 GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVV 276
            IL P P YP++     + G  +    L     +  E     ++    K +      +++
Sbjct: 125 TILVPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELERAIRES-IPKPR------MMI 177

Query: 277 IN-PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY 335
           +  P NPT Q +  +    +V   K+  ++++ D  Y + VY    K  S  +V      
Sbjct: 178 LGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVY-DGWKAPSIMQVP----- 231

Query: 336 GEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQI--- 392
           G KDI+ V F ++SK  Y   G R G+  + G + E+   + ++ S          +   
Sbjct: 232 GAKDIA-VEFFTLSKS-YNMAGWRIGF--MVG-NPELVSALARIKS-YHDYGTFTPLQVA 285

Query: 393 -LASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLF 451
            +A+L     +   +       +         +R   L        G      + +MY++
Sbjct: 286 AIAAL-----EGDQQCVRDIARQYQ-------QRRDVLVKGLREA-GWMVENPKASMYVW 332

Query: 452 PRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQED 511
            +I  P   + + E         + ++LL    + + PG GFG   G  H R  ++   D
Sbjct: 333 AKIPEPYAHLGSLE---------FAKKLLQDAKVSVSPGIGFGD-YGDDHVRFALIENRD 382

Query: 512 KIPAIVTRLTDFHKN 526
           ++   V  +    + 
Sbjct: 383 RLRQAVRGIKAMFRA 397

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* Length = 400

 Score =  143 bits (363), Expect = 4e-38
 Identities = 70/372 (18%), Positives = 117/372 (31%), Gaps = 64/372 (17%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y    G+  LR  ++           D  +IF++DGA   +  ++       N  +    
Sbjct: 71  YGPDFGLPALRQKLSEDFYRGF---VDAKEIFISDGAKVDLFRLLSFF--GPNQTVAIQD 125

Query: 223 PQYPLYSASIALHGGTLVPYY-LDEATGWGLETSEVKKQLEAAKAKGITVRALVVIN-PG 280
           P YP Y     L G   +      +   +  E  E                 ++ +  P 
Sbjct: 126 PSYPAYLDIARLTGAKEIIALPCLQENAFFPEFPE------DTHID------ILCLCSPN 173

Query: 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDI 340
           NPTG VL ++  RAIV +  +  +++L D  Y   +  P     S  ++        +  
Sbjct: 174 NPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPS-LPKSIFEIP-----DARFC 227

Query: 341 SLVSFQSVSKGYYGECGKRGGYM-----EVTGFSAEVREQIYKVASVNLCSNISG--QIL 393
           + +   S SK   G  G R G+              V +   +  S    +  S   Q  
Sbjct: 228 A-IEINSFSK-PLGFAGIRLGWTVIPQELTYADGHFVIQDWERFLS-TTFNGASIPAQEA 284

Query: 394 ASLVMSPPKVGD--ESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLF 451
               +S     +    Y                 +  L  A  +  G      E A YL+
Sbjct: 285 GVAGLSILPQLEAIHYYR--------------ENSDLLRKALLAT-GFEVFGGEHAPYLW 329

Query: 452 PRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQED 511
            +    +  I   +              L    I + PG GFG+  G+   R + L + +
Sbjct: 330 VKP--TQANISDRD---------LFDFFLREYHIAITPGIGFGR-SGSGFVRFSSLGKRE 377

Query: 512 KIPAIVTRLTDF 523
            I A   RL   
Sbjct: 378 DILAACERLQMA 389

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} Length = 407

 Score =  143 bits (363), Expect = 5e-38
 Identities = 70/381 (18%), Positives = 126/381 (33%), Gaps = 59/381 (15%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPND-IFLTDGASPAVHMMMQLLIRSENDGILCP 221
           Y+  +G  G+RD +A  + A  G P D  D + +T G   A+ + +   + +  D +   
Sbjct: 74  YTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATV-ARGDKVAIV 132

Query: 222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVK---KQLEAAKAKGIT--VRALVV 276
            P Y      +    G +VP  LD  +    + +        LE A         R  + 
Sbjct: 133 QPDYFANRKLVEFFEGEMVPVQLDYVSA---DETRAGLDLTGLEEA----FKAGARVFLF 185

Query: 277 INPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG 336
            NP NP G V + E    I     + G  ++AD++Y    Y     +   +  +      
Sbjct: 186 SNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGA-SYTHLRAEAAVD--- 241

Query: 337 EKDISLVSFQSVSKGYYGEC--GKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQI- 392
             +  +      SK        G R G       S  +  ++ K+ + V+L +    Q  
Sbjct: 242 -AENVVT-IMGPSKTE---SLSGYRLGVA---FGSRAIIARMEKLQAIVSLRAAGYSQAV 293

Query: 393 -LASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLF 451
                  +P  + ++    +                 L       EG+     +   YLF
Sbjct: 294 LRGWFDEAPGWM-EDRIARH-----------QAIRDELLHVLRGCEGVFARTPQAGSYLF 341

Query: 452 PRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQED 511
           PR+    K   A           + + L    G+V+ PG+ F         R       +
Sbjct: 342 PRL---PKLAVAPAE--------FVKILRLQAGVVVTPGTEFSP-HTADSVRLNFSQDHE 389

Query: 512 KIPAIVTRLTDFHKNFMDKFR 532
              A   R+       ++++R
Sbjct: 390 AAVAAARRI----VTLVERYR 406

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} Length = 444

 Score =  144 bits (364), Expect = 6e-38
 Identities = 79/487 (16%), Positives = 141/487 (28%), Gaps = 90/487 (18%)

Query: 75  EIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRS 134
            I  +   L   L+++   +          GNP       I    E+          D  
Sbjct: 16  GISQLMDDLGDALKSDQPVNML------GGGNPA-----KIDAVNELFLETYKALGNDND 64

Query: 135 ETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIF 194
             +   SA                +   YS+ QG     D +         +     +I 
Sbjct: 65  TGKANSSA--------------IISMANYSNPQGDSAFIDALVGFFNRHYDWNLTSENIA 110

Query: 195 LTDGASPAVHMMMQLLIR--------------SENDGILCPIPQYPLYSASIALHGG--- 237
           LT+G+  A   +  L                  +   +L   P+Y  YS           
Sbjct: 111 LTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAA 170

Query: 238 ---TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRA 294
               +     D   G+     + +        K   + A+    P NPTG VL +E    
Sbjct: 171 VLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAH 230

Query: 295 IVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYG 354
           + +  K+  + L+ D  Y      P   +         + +    I   S    SK   G
Sbjct: 231 LAEIAKRYDIPLIIDNAYGM--PFPNIIYSDA-----HLNWDNNTILCFSL---SK--IG 278

Query: 355 ECGKRGGYMEVTGFSAEVREQIYKV-ASVNLCSNISGQILASLVMSPPKVGDESYESYCA 413
             G R G +      A+V E +  + A VNL     G  +A+ +++     ++  +    
Sbjct: 279 LPGMRTGIIVA---DAKVIEAVSAMNAVVNLAPTRFGAAIATPLVA-----NDRIKQLSD 330

Query: 414 ERDGILSSLARRAKTLEDAFN---SLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTV 470
               I     ++A               +  +K EGA++L+      +  I   +     
Sbjct: 331 NE--IKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLW--FKDLPISTLD----- 381

Query: 471 PDAFYCRRLLNATGIVLVPGSGFG-------QVPGTWHFRCTILPQEDKIPAIVTRLTDF 523
                  RL    G ++VP   F                R +I   E  +   +  + + 
Sbjct: 382 ----LYERLKAK-GTLIVPSEYFFPGVDVSDYQHAHECIRMSIAADEQTLIDGIKVIGEV 436

Query: 524 HKNFMDK 530
            +   D 
Sbjct: 437 VRELYDN 443

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} Length = 404

 Score =  141 bits (358), Expect = 2e-37
 Identities = 71/372 (19%), Positives = 130/372 (34%), Gaps = 50/372 (13%)

Query: 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPND-IFLTDGASPA-VHMMMQLLIRSENDG 217
              Y    G +  +  I    + +     D  D + +  G     V +   ++  +  D 
Sbjct: 78  NQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVI--NPGDY 135

Query: 218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI 277
           +L P P Y  Y A + L  G  VP  L+    +  + S+V  Q+   K K      L+ +
Sbjct: 136 VLLPDPGYTDYLAGVLLADGKPVPLNLEP-PHYLPDWSKVDSQI-IDKTK------LIYL 187

Query: 278 N-PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG 336
             P NPTG    +E     +   K     ++ D  Y    +  + K  S           
Sbjct: 188 TYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGF--DAKNPSILASE-----N 240

Query: 337 EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILAS 395
            KD++ +   S+SKGY    G R G+    G + ++ + + K  +  N     + Q  A 
Sbjct: 241 GKDVA-IEIYSLSKGY-NMSGFRVGF--AVG-NKDMIQALKKYQTHTNAGMFGALQDAAI 295

Query: 396 LVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQ 455
             +      D+  E               R    E        +    A+G +Y++    
Sbjct: 296 YAL---NHYDDFLEEQSNVFK-------TRRDRFEAMLAKA-DLPFVHAKGGIYVWLET- 343

Query: 456 LPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPA 515
            P     + +         + + L+    I++ PG  FG+  G  + R ++   + K+  
Sbjct: 344 -PPG-YDSEQ---------FEQFLVQEKSILVAPGKPFGE-NGNRYVRISLALDDQKLDE 391

Query: 516 IVTRLTDFHKNF 527
              RLT+    +
Sbjct: 392 AAIRLTELAYLY 403

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* Length = 389

 Score =  138 bits (350), Expect = 2e-36
 Identities = 82/350 (23%), Positives = 151/350 (43%), Gaps = 53/350 (15%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILCP 221
           Y  + G+  LR+ IA  ++ ++G  ADP  +I +  GA+ A  M +   +  + + +L P
Sbjct: 59  YGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFL-KDGEEVLIP 117

Query: 222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT--VRALVVINP 279
            P +  Y+ ++ L GG  V     E   + L   +   +L+      +T   RAL++ +P
Sbjct: 118 TPAFVSYAPAVILAGGKPVEVPTYEEDEFRL-NVD---ELKKY----VTDKTRALIINSP 169

Query: 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKD 339
            NPTG VL +++   I DF  +  L++++DEVY+  +Y  + + +S   +      G  +
Sbjct: 170 CNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYD-DARHYSIASLD-----GMFE 223

Query: 340 ISLVSFQSVSKGYYGEC--GKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQI--LA 394
            ++      SK +      G R G++      + + E++ K       C     Q     
Sbjct: 224 RTIT-VNGFSKTF---AMTGWRLGFV---AAPSWIIERMVKFQMYNATCPVTFIQYAAAK 276

Query: 395 SLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRI 454
           +L        + S+++    R        RR K +    N + G+   K +GA Y+FPRI
Sbjct: 277 AL------KDERSWKAVEEMRK----EYDRRRKLVWKRLNEM-GLPTVKPKGAFYIFPRI 325

Query: 455 QLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRC 504
                    ++         +   +L    + +VPGS FG+  G  + R 
Sbjct: 326 ---RDTGLTSKK--------FSELMLKEARVAVVPGSAFGK-AGEGYVRI 363

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} Length = 376

 Score =  135 bits (343), Expect = 2e-35
 Identities = 81/371 (21%), Positives = 129/371 (34%), Gaps = 59/371 (15%)

Query: 160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPND-IFLTDGASPA-VHMMMQLLIRSENDG 217
           T  Y          +  A   E R G   DP        G+     H+++ L      D 
Sbjct: 56  TYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAHLLLALT--EPEDL 113

Query: 218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI 277
           +L P   YP Y  +  +         L E      +   V + +   +AK      ++++
Sbjct: 114 LLLPEVAYPSYFGAARVASLRTFLIPLRE--DGLADLKAVPEGV-WREAK------VLLL 164

Query: 278 N-PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG 336
           N P NPTG V         +   +K GL L+ D  Y + VY  E +  S   +      G
Sbjct: 165 NYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVY--EGEAPSPLALP-----G 217

Query: 337 EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQI---- 392
            K+   V   S+SK  Y   G R G+    G S E   ++ +V    +  N    +    
Sbjct: 218 AKERV-VELFSLSKS-YNLAGFRLGF--ALG-SEEALARLERVKG-VIDFNQYAGVLRMG 271

Query: 393 LASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFP 452
           + +L     K   E    Y             RA  + +A      ++       MYL+ 
Sbjct: 272 VEAL-----KTPKEVVRGYARVYR-------ERALGMAEALK--GVLSLLPPRATMYLWG 317

Query: 453 RIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDK 512
           R+  PE           V D  +  RL+   G+ L PG GFG   G    R  ++   ++
Sbjct: 318 RL--PEG----------VDDLEFGLRLVER-GVALAPGRGFGP-GGKGFVRIALVRPLEE 363

Query: 513 IPAIVTRLTDF 523
           +     R+ + 
Sbjct: 364 LLEAAKRIREA 374

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} Length = 449

 Score =  134 bits (340), Expect = 1e-34
 Identities = 71/377 (18%), Positives = 127/377 (33%), Gaps = 55/377 (14%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y   QG   LR+ +A+      G  AD  +IF++DG+   +   +Q++       +    
Sbjct: 107 YGAEQGQGALREAVASTFYGHAGRAAD--EIFISDGSKCDI-ARIQMMF-GSKPTVAVQD 162

Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKK---QLEAA-KAKGITVRALVVIN 278
           P YP+Y  +  + G T             +  +        L  A +        ++   
Sbjct: 163 PSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKAKRTD------IIFFC 216

Query: 279 -PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE 337
            P NPTG          +V+F +K G +L+ D  Y   +  P+    +  ++      G 
Sbjct: 217 SPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPD-CPKTIYEIP-----GA 270

Query: 338 KDISLVSFQSVSKGYYGECGKRGGYM-----EVTGFSAEVREQIYKVASVNLCSNISG-- 390
            +++ +   S SK Y G  G R G+              V     +V +    +  S   
Sbjct: 271 DEVA-IETCSFSK-YAGFTGVRLGWTVVPKALKYANGEPVHADWNRVMT-TCFNGASNIV 327

Query: 391 QILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYL 450
           Q      + P   G +   +               A+ L+  F  + G +    + A Y+
Sbjct: 328 QAGGLACLQPE--GLKEMNAMIKF-------YKENAQILKTTFTEM-GFSVYGGDDAPYI 377

Query: 451 FPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQE 510
           +     P K   + +             +L    IV  PGSG+G   G    R +     
Sbjct: 378 WVGF--PGK--PSWD---------VFAEILERCNIVTTPGSGYGP-AGEGFVRASAFGSR 423

Query: 511 DKIPAIVTRLTDFHKNF 527
           + I   V R  + +   
Sbjct: 424 ENILEAVRRFKEAYGKR 440

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* Length = 432

 Score =  132 bits (334), Expect = 7e-34
 Identities = 78/389 (20%), Positives = 125/389 (32%), Gaps = 72/389 (18%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y   QG K LR  IA       G   D  D+F++DGA   +  +  +     N  I    
Sbjct: 94  YGAEQGAKPLRAAIAKTFYGGLGIGDD--DVFVSDGAKCDISRLQVMF--GSNVTIAVQD 149

Query: 223 PQYPLYSASIALHGGTLV----------PYY--LDEATGWGLETSEVKKQLEAAKAKGIT 270
           P YP Y  S  + G T              Y       G+  + S V +           
Sbjct: 150 PSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLSTVGR----------- 198

Query: 271 VRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVS 330
              +   +P NPTG     E    +V+F KK G +++ D  Y   +   +    S  ++ 
Sbjct: 199 TDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMS--DDNPRSIFEIP 256

Query: 331 RSMGYGEKDISLVSFQSVSKGYYGECGKRGGYM-----EVTGFSAEVREQIYKVASVNLC 385
                G ++++ +   S S  Y G  G R G+       +      V +   ++      
Sbjct: 257 -----GAEEVA-METASFSN-YAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIIC-TCF 308

Query: 386 SNISGQI----LASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITC 441
           +  S       LA L     +   +    Y                 + D F SL G   
Sbjct: 309 NGASNISQAGALACLTPEGLEAMHKVIGFY-----------KENTNIIIDTFTSL-GYDV 356

Query: 442 NKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWH 501
              + A Y++     P +   + +             +L  T +V  PGSGFG   G   
Sbjct: 357 YGGKNAPYVWVHF--PNQ--SSWD---------VFAEILEKTHVVTTPGSGFGP-GGEGF 402

Query: 502 FRCTILPQEDKIPAIVTRLTDFHKNFMDK 530
            R +     + I     R    +K+    
Sbjct: 403 VRVSAFGHRENILEACRRFKQLYKHHHHH 431

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} Length = 376

 Score =  130 bits (329), Expect = 1e-33
 Identities = 61/371 (16%), Positives = 116/371 (31%), Gaps = 54/371 (14%)

Query: 161 GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV-HMMMQLLIRSENDGIL 219
             Y  S   + LR       + R       N++  T G+   + +    +L   +N  I 
Sbjct: 53  NIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFVLFDYQNPTIA 112

Query: 220 CPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVIN- 278
            P P Y +Y  +        +   L +   +    +E     E  +        LV++N 
Sbjct: 113 YPNPFYQIYEGAAKFIKAKSLLMPLTKENDFTPSLNE----KELQEVD------LVILNS 162

Query: 279 PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEK 338
           P NPTG+ L+ E   + V    K   +L+ DE Y E +Y       S  +     G    
Sbjct: 163 PNNPTGRTLSLEELISWVKLALKHDFILINDECYSE-IY-ENTPPPSLLEACMLAGNEAF 220

Query: 339 DISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISG--QILASL 396
              ++   S+SK      G R G+  + G  + + E+     +  L    +   Q  +  
Sbjct: 221 KN-VLVIHSLSKR-SSAPGLRSGF--IAG-DSRLLEKYKAFRA-YLGYTSANAIQKASEA 274

Query: 397 VMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQL 456
                +  +     Y           A   K     F +           + Y++  +  
Sbjct: 275 AWLDDRHAEFFRNIY-----------ANNLKLARKIFKNTL-----IYPYSFYVYLPV-- 316

Query: 457 PEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFG-QVPGTWHFRCTILPQEDKIPA 515
                             + + L    GI+ +P    G    G  + R  ++     +  
Sbjct: 317 QN-------------GENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVYDTPLLEK 363

Query: 516 IVTRLTDFHKN 526
            +  +  + +N
Sbjct: 364 PLEIIETYREN 374

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} Length = 417

 Score =  130 bits (330), Expect = 2e-33
 Identities = 71/430 (16%), Positives = 127/430 (29%), Gaps = 63/430 (14%)

Query: 117 FFREVLALCDHPSIL-------DRSETQGLFSADSIERAWQILDQIPGRATGA--YSHSQ 167
              ++      P  +                  D  +     + +    A     Y   Q
Sbjct: 20  LMEDLNDGLRTPGAIMLGGGNPAHI----PAMQDYFQTLLTDMVESGKAADALCNYDGPQ 75

Query: 168 GIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI--RSENDGILCPIPQY 225
           G   L + +A  +    G+  +P +I LT+G+  A   +  L    R++        P  
Sbjct: 76  GKTALLNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLA 135

Query: 226 PLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT--VRALVVINPGNPT 283
           P Y           + +         L   + K  ++      I      + V  P NPT
Sbjct: 136 PEYIGYADSGLEDDL-FVSARPNIELLPEGQFKYHVDFEHLH-IGEETGMICVSRPTNPT 193

Query: 284 GQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLV 343
           G V+ +E    +     +  + L+ D  Y    + P   F   + +          I  +
Sbjct: 194 GNVITDEELMKLDRLANQHNIPLVIDNAYGV-PF-PGIIFSEARPLWN-----PNIILCM 246

Query: 344 SFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV-ASVNLCSNISGQILASLVMSPPK 402
           S    SK   G  G R G +     + +    I  +   ++L     G  +   ++    
Sbjct: 247 SL---SK--LGLPGSRCGIIIA---NDKTITAIANMNGIISLAPGGMGPAMMCEMIK--- 295

Query: 403 VGDESYESYCAERDGILSSLARRAKTLEDAFNSL---EGITCNKAEGAMYLFPRIQLPEK 459
                          I     +R +            E    +K EGA++L+      + 
Sbjct: 296 --RNDLLRLSETV--IKPFYYQRVQQTIAIIRRYLSEERCLIHKPEGAIFLWLW--FKDL 349

Query: 460 AIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFG------QVPGTWHFRCTILPQEDKI 513
            I      +           L A G+++VPG  F               R   +P+ DKI
Sbjct: 350 PITTELLYQ----------RLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVPEPDKI 399

Query: 514 PAIVTRLTDF 523
            A V  L + 
Sbjct: 400 EAGVKILAEE 409

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} Length = 447

 Score =  131 bits (331), Expect = 2e-33
 Identities = 68/351 (19%), Positives = 129/351 (36%), Gaps = 44/351 (12%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           YS ++G   L +++               ++ +T GA+  +   +  L+    D ++   
Sbjct: 91  YSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGILSCLMGLLN-AGDEVIVFE 149

Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVK------KQLEAAKAKGIT--VRAL 274
           P +  Y  +I L GG +V   ++         +  +      +Q E A    IT   +A+
Sbjct: 150 PFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKA----ITSKTKAV 205

Query: 275 VVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG 334
           ++  P NP G+V   E    + + C K  +V+++DEVY+   +     F      + S  
Sbjct: 206 IINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDS--FTRI--ATLSPE 261

Query: 335 YGEKDISLVSFQSVSKGYYGEC-GKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQ-- 391
            G+  ++ V   S  K +     G R G+  V   +AE+     K  +  +C        
Sbjct: 262 IGQLTLT-VG--SAGKSFA--ATGWRIGW--VLSLNAELLSYAAKAHT-RICFASPSPLQ 313

Query: 392 --ILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMY 449
                S+  +        +E    E          + K     F+ L G+     EG  +
Sbjct: 314 EACANSINDALK---IGYFEKMRQE-------YINKFKIFTSIFDEL-GLPYTAPEGTYF 362

Query: 450 LFP---RIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVP 497
           +     ++++PE      E      D      L+N  G+V +P + F    
Sbjct: 363 VLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKE 413

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 Length = 386

 Score =  128 bits (325), Expect = 5e-33
 Identities = 78/366 (21%), Positives = 142/366 (38%), Gaps = 47/366 (12%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILCP 221
           Y+   G++ LR+ IA   E   G+  D  +DI +T GA+ A++  +  L+R   D ++C 
Sbjct: 63  YAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVR-NGDEVICF 121

Query: 222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT--VRALVVINP 279
            P Y  Y+ +IAL GG +    L +   + ++  E      A     ++   R +++  P
Sbjct: 122 DPSYDSYAPAIALSGGIVKRMAL-QPPHFRVDWQE----FAAL----LSERTRLVILNTP 172

Query: 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKD 339
            NP+  V  + +  A+        + +++DEVY+   +  +    S           E+ 
Sbjct: 173 HNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQ-GHASVLAHP---QLRERA 228

Query: 340 ISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV-ASVNLCSNISGQILASLVM 398
           +++ SF    K Y+   G + GY       A +  +I KV   +    N   Q+  + ++
Sbjct: 229 VAVSSF---GKTYHMT-GWKVGY--CVA-PAPISAEIRKVHQYLTFSVNTPAQLALADML 281

Query: 399 SPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPE 458
              +   E Y +             ++   L +A N    +     EG  +L        
Sbjct: 282 ---RAEPEHYLALPDF-------YRQKRDILVNALNES-RLEILPCEGTYFLLVDY---- 326

Query: 459 KAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHF-RCTILPQEDKIPAIV 517
                  A  T+ D  +C+ L    G+  +P S F   P      R     +E  + A  
Sbjct: 327 ------SAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAA 380

Query: 518 TRLTDF 523
            RL   
Sbjct: 381 ERLRQL 386

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* Length = 429

 Score =  127 bits (321), Expect = 4e-32
 Identities = 59/367 (16%), Positives = 123/367 (33%), Gaps = 29/367 (7%)

Query: 145 IERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAV 203
           +       +     A   Y+   G   L   ++           +P  ++ +T GA  A+
Sbjct: 56  LNALAAAANSPDPLAN-QYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEAL 114

Query: 204 HMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEV----KK 259
           +  +Q  +  E D ++   P +  Y   +   GG      L      G  +S        
Sbjct: 115 YATIQGHVD-EGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNN 173

Query: 260 QLEAAKAKGIT--VRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
           +LEA          + +++  P NP G+V+       + + CKK  ++ ++DEVY+  V+
Sbjct: 174 ELEAL----FNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVF 229

Query: 318 VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY 377
            P  +      +    G  E+ I++ S     K +    G + G+    G    + + + 
Sbjct: 230 EPF-EHIRICTLP---GMWERTITIGSA---GKTFSLT-GWKIGW--AYG-PEALLKNLQ 278

Query: 378 KVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL 436
            V            Q   ++         +S E Y    + I   L  +   +      +
Sbjct: 279 MVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYF---NSISGELMAKRDYMASFLAEV 335

Query: 437 EGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQV 496
            G+     +G  ++       +  +   +      D  + + +  + G+  +P S F   
Sbjct: 336 -GMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSE 394

Query: 497 PGTWHFR 503
           P      
Sbjct: 395 PNKHLGE 401

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* Length = 422

 Score =  127 bits (320), Expect = 4e-32
 Identities = 81/437 (18%), Positives = 148/437 (33%), Gaps = 45/437 (10%)

Query: 110 LGQQPITFFREVLALC-DHPSILDRSETQGLFSADS----IERAWQILDQIPGRATGAYS 164
           L       + E + L  +H  +   +  QG          +E     +          Y+
Sbjct: 10  LDGIDYNPWVEFVKLASEHDVV---NLGQGFPDFPPPDFAVEAFQHAVSG--DFMLNQYT 64

Query: 165 HSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIP 223
            + G   L   +A+      G   DP  ++ +T G   A+    Q L+  E D ++   P
Sbjct: 65  KTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVD-EGDEVIIIEP 123

Query: 224 QYPLYSASIALHGGTLVPYYLDEATGWGLETSEV------KKQLEAAKAKGIT--VRALV 275
            +  Y     + GG  V   L        E            +L        T   +ALV
Sbjct: 124 FFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGK----FTSRTKALV 179

Query: 276 VINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY 335
           +  P NP G+V + E    +   C++  +V + DEVYQ  VY    +  S   +    G 
Sbjct: 180 LNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGH-QHISIASLP---GM 235

Query: 336 GEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILA 394
            E+ +++ S     K +    G + G+  V G    + + +  V            Q   
Sbjct: 236 WERTLTIGSA---GKTFSAT-GWKVGW--VLG-PDHIMKHLRTVHQNSVFHCPTQSQAAV 288

Query: 395 SLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRI 454
           +      ++      SY  +      ++ R    +  +  S+ G+     +G+ +L   I
Sbjct: 289 AESFEREQLLFRQPSSYFVQ---FPQAMQRCRDHMIRSLQSV-GLKPIIPQGSYFLITDI 344

Query: 455 -QLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVP----GTWHFRCTILPQ 509
                K      A     D  + + ++   G+V +P S F  VP       + R   +  
Sbjct: 345 SDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKD 404

Query: 510 EDKIPAIVTRLTDFHKN 526
           E  + A+  +L  +   
Sbjct: 405 EATLQAMDEKLRKWKVE 421

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A* Length = 410

 Score =  125 bits (317), Expect = 9e-32
 Identities = 64/375 (17%), Positives = 129/375 (34%), Gaps = 34/375 (9%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCP 221
           Y+   G   L   ++           DPN +I +  GA  ++   +Q L+    D ++  
Sbjct: 57  YTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGLVD-PGDEVIIM 115

Query: 222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVK-----KQLEAAKAKGIT--VRAL 274
           +P Y  Y   + + G   V   L      G++ +        ++LE+      +   +A+
Sbjct: 116 VPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESK----FSSKTKAI 171

Query: 275 VVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG 334
           ++  P NP G+V   +  + I D C K   + ++DEVY+  VY           +    G
Sbjct: 172 ILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGH-THVKIATLP---G 227

Query: 335 YGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQIL 393
             E+ I++ S     K +    G + G+    G  A + + +  V            Q  
Sbjct: 228 MWERTITIGSA---GKTFSVT-GWKLGW--SIG-PAHLIKHLQTVQQNSFYTCATPLQAA 280

Query: 394 ASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPR 453
            +          +  E Y      +   L  +   +    NS+ G+     +G  ++   
Sbjct: 281 LAEAFWIDIKRMDDPECYFNS---LPKELEVKRDRMVRLLNSV-GLKPIVPDGGYFIIAD 336

Query: 454 IQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHF----RCTILPQ 509
           +     A  +        D  + + +     +  +P S F       HF    R   + +
Sbjct: 337 VS-SLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIKK 395

Query: 510 EDKIPAIVTRLTDFH 524
           +  + A       ++
Sbjct: 396 DSTLDAAEEIFRAWN 410

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* Length = 381

 Score =  124 bits (315), Expect = 1e-31
 Identities = 75/377 (19%), Positives = 131/377 (34%), Gaps = 66/377 (17%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y+   G+  LR+ +A           +P  + +T GA+ A+++++Q L+    D ++   
Sbjct: 57  YAPPAGLPALREALAEEFAV------EPESVVVTSGATEALYVLLQSLVG-PGDEVVVLE 109

Query: 223 PQYPLYSASIALHGGTLVPYYLD-EATGWGLETSEVKKQLEAAKAKGIT--VRALVVINP 279
           P + +Y     L G       LD    G+ L+ S     LE A    +T   RAL++  P
Sbjct: 110 PFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSA----LEKA----LTPRTRALLLNTP 161

Query: 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKD 339
            NPTG V  E    AI    +   L L++DEVY E  Y                   E+ 
Sbjct: 162 MNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGER-------PRRLREFAPERT 214

Query: 340 ISLVSFQSVSKGYYGEC-GKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLV 397
            ++ S     K       G R G+  + G   E   ++  +    +  +    Q   +  
Sbjct: 215 FTVGSA---GKRLE--ATGYRVGW--IVG-PKEFMPRLAGMRQWTSFSAPTPLQAGVAEA 266

Query: 398 MSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLP 457
           +   +  +  YE+             RR   L     ++ G+     EG  +L   +   
Sbjct: 267 LKLAR-REGFYEALREG-------YRRRRDLLAGGLRAM-GLRVYVPEGTYFLMAEL--- 314

Query: 458 EKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHF-RCTILPQEDKIPAI 516
                           +   RL+    + L+P S F          R      E+++   
Sbjct: 315 --------------PGWDAFRLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLA 360

Query: 517 VTRLTDFHKNFMDKFRN 533
           + RL       ++  R 
Sbjct: 361 LERL----GRVVNSPRE 373

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 Length = 389

 Score =  123 bits (310), Expect = 7e-31
 Identities = 84/371 (22%), Positives = 146/371 (39%), Gaps = 63/371 (16%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y+  +GI  LR+ IA  I  R      P+ + +T+GA  A+      L+    D ++   
Sbjct: 74  YTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALL-DPGDEVIVFS 132

Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT--VRALVVINPG 280
           P +  Y   I L GGT+       +  +   + E   ++E      +    +A+++ +P 
Sbjct: 133 PVWVSYIPQIILAGGTVNVVETFMSKNFQP-SLE---EVEGL----LVGKTKAVLINSPN 184

Query: 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDI 340
           NPTG V   E    +V   KK    +++DEVY   VY    +F S   VS        D 
Sbjct: 185 NPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVY--TDEFTSILDVS-----EGFDR 237

Query: 341 SLVSFQSVSKGYYGEC--GKRGGYMEVTGFSAEVREQIYKVAS---VNLCSNISGQILAS 395
            +      SK +      G R GY+     S +V   + K+ S     + + ++ Q  A+
Sbjct: 238 IVYI-NGFSKSH---SMTGWRVGYL---ISSEKVATAVSKIQSHTTSCINT-VA-QY-AA 287

Query: 396 LVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQ 455
           L            ++   +   ++ +   R   + +    + G+   + EGA YLF ++ 
Sbjct: 288 L------------KALEVDNSYMVQTFKERKNFVVERLKKM-GVKFVEPEGAFYLFFKV- 333

Query: 456 LPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPA 515
                              +C RLL    + LVPGS F   PG    R +     +++  
Sbjct: 334 -----------RGDDVK--FCERLLEEKKVALVPGSAFL-KPG--FVRLSFATSIERLTE 377

Query: 516 IVTRLTDFHKN 526
            + R+ DF  +
Sbjct: 378 ALDRIEDFLNS 388

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} Length = 533

 Score =  124 bits (312), Expect = 2e-30
 Identities = 71/424 (16%), Positives = 128/424 (30%), Gaps = 78/424 (18%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGF----PADPNDIFLTDGASPAVHMMMQLLIRS----E 214
           Y          + I         +     A+  D+F T+G + A+      L  +    +
Sbjct: 133 YPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKK 192

Query: 215 NDGILCPIPQYPLYSASIALHGGTLVPYYL--DEATGWGLETSEVKKQLEAAKAKGIT-- 270
            D I    P +  Y     L    LV   L   E   W +       ++E          
Sbjct: 193 GDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEI-EPN---EIEKL----KDPS 244

Query: 271 VRALVVINPGNPTGQVLAEENQRAIVDFCKK-EGLVLLADEVYQENVYVPEKKFHSFKKV 329
           ++AL+V+NP NPT +        AI    +K   L++++DEVY   V      F S   V
Sbjct: 245 IKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVP----NFKSIYSV 300

Query: 330 SRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYM------------------------EV 365
                     + LV   S SK  +G  G R G +                        + 
Sbjct: 301 VP-----YNTM-LVY--SYSK-LFGCTGWRLGVIALNEKNVFDDNIAHLDKVELRQLHKR 351

Query: 366 TGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR 425
                   +++  +  +   S   G    + + +P ++ +  +            S    
Sbjct: 352 YSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDPY 411

Query: 426 AKTLEDAFNS-----LEGITC----NKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAF-- 474
                   +       + +             Y    I    + I   E    + + F  
Sbjct: 412 IDIARKLVSERYDQLHDAMQAPKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQ 471

Query: 475 --YCRRLLNATGIVLVPGSGFGQVPGTWHFRC---TILPQEDKIPAIVTRLTDFHKNFMD 529
             +  +L    G+VLV G GFG        R     +    +    I  ++ +  K + +
Sbjct: 472 VDFLLKLAEKNGVVLVDGVGFGA--KPGELRVSQANLP--TEDYALIGKQVLELLKEYYE 527

Query: 530 KFRN 533
           +F+ 
Sbjct: 528 EFKQ 531

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} Length = 411

 Score =  122 bits (308), Expect = 2e-30
 Identities = 74/340 (21%), Positives = 122/340 (35%), Gaps = 46/340 (13%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILCP 221
           Y    G   LR  IAA      G   DP  ++ +T GA+ A+   +  L+      +L  
Sbjct: 58  YPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGLVE-PGSEVLLI 116

Query: 222 IPQYPLYSASIALHGGTLVPYYLD-EATGWGLETSEVKKQLEAAKAKGIT--VRALVVIN 278
            P Y  YS  +A+ G   V   L  +  G+ L+       L  A    +T   RAL++ +
Sbjct: 117 EPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADA----LRRA----VTPRTRALIINS 168

Query: 279 PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEK 338
           P NPTG VL+     AI +      LV++ DEVY+  V+    +           G  E+
Sbjct: 169 PHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHA-RHLPLAGFD---GMAER 224

Query: 339 DISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLV 397
            I++ S    +K +    G + G+    G  AE+   +      ++       Q   +L 
Sbjct: 225 TITISSA---AKMFNCT-GWKIGW--ACG-PAELIAGVRAAKQYLSYVGGAPFQPAVALA 277

Query: 398 MSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLP 457
           +      D    +           L  R   L      + G   + + G  +L       
Sbjct: 278 L---DTEDAWVAALRNS-------LRARRDRLAAGLTEI-GFAVHDSYGTYFLCADP--- 323

Query: 458 EKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVP 497
            + +   ++       F C  L    G+  +P S F    
Sbjct: 324 -RPLGYDDST-----EF-CAALPEKVGVAAIPMSAFCDPA 356

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} Length = 430

 Score =  118 bits (297), Expect = 5e-29
 Identities = 52/362 (14%), Positives = 116/362 (32%), Gaps = 51/362 (14%)

Query: 152 LDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADP---NDIFLTDGASPAVHMMMQ 208
            + +       Y+  QGI+ LRD     +  RD         +   +T+  +  + ++  
Sbjct: 73  FNDLTPDEIFPYAPPQGIEELRDLWQQKM-LRDNPELSIDNMSRPIVTNALTHGLSLVGD 131

Query: 209 LLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKG 268
           L +  ++D IL P   +  Y        G  +  Y          T  + + L++     
Sbjct: 132 LFVN-QDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDKDGHYTTDSLVEALQSYNKDK 190

Query: 269 ITVRALVVIN-PGNPTGQVLAEENQRAIVDFCKKEG-----LVLLADEVYQENVYVPEKK 322
           +    ++++N P NPTG     +    IV+  K        ++ + D+ Y    Y  +  
Sbjct: 191 V----IMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYE-DVY 245

Query: 323 FHSFKKVSRSMGYGEKDISLVSFQSVSKGY--YGECGKRGGYMEVTGFSAEVREQIYKVA 380
             S      ++      I  +     +K +  +G    R G+M         +E +    
Sbjct: 246 TQSLFTALTNL--HSNAILPIRLDGATKEFFAWGF---RVGFMTFGTSDQTTKEVLEAKV 300

Query: 381 SVNLCSNIS-----GQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNS 435
              + SNIS      Q     V+          + +  E +  + +L  R +  ++   +
Sbjct: 301 KGLIRSNISSGPLPTQSAVKHVLKNN-------KQFDKEIEQNIQTLKERYEVTKEVVYA 353

Query: 436 L---EGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSG 492
                           ++  +       +   + E         + L++   I ++  + 
Sbjct: 354 DQYHSHWQAYDFNSGYFMAIK-------VHDVDPEA------LRKHLIDKYSIGVIALNA 400

Query: 493 FG 494
             
Sbjct: 401 TD 402

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 Length = 388

 Score =  117 bits (296), Expect = 5e-29
 Identities = 90/369 (24%), Positives = 152/369 (41%), Gaps = 56/369 (15%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y  + G   LR+ IA  ++  +G     ++I +T+G   ++  +M  +I    D ++ P 
Sbjct: 63  YGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMI-EPGDEVIIPA 121

Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRA-LVVIN-PG 280
           P +  Y   + L  GT V       T + + + E   Q+  A    IT +  L+V N P 
Sbjct: 122 PFWVSYPEMVKLAEGTPVILPTTVETQFKV-SPE---QIRQA----ITPKTKLLVFNTPS 173

Query: 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDI 340
           NPTG V   +  RAI     + GL +L+DE+Y++ +Y    +  S    S        + 
Sbjct: 174 NPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDA-QHLSIGAASPEA----YER 228

Query: 341 SLVSFQSVSKGYYGEC--GKRGGYMEVTGFSAEVREQIYKVASVNLCSNIS--GQI--LA 394
           S+V     +K Y      G R G++        + +   K+   +  SN+    Q   +A
Sbjct: 229 SVVC-SGFAKTY---AMTGWRVGFL---AGPVPLVKAATKIQG-HSTSNVCTFAQYGAIA 280

Query: 395 SLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRI 454
           +   S   V  E   ++   R  +L +L           N++ G+ C K +GA Y+FP I
Sbjct: 281 AYENSQDCV-QEMLAAFAERRRYMLDAL-----------NAMPGLECPKPDGAFYMFPSI 328

Query: 455 QLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIP 514
               K  +++          +C  LL+   +  VPG+ FG        R +     D I 
Sbjct: 329 A---KTGRSSLD--------FCSELLDQHQVATVPGAAFG-ADD--CIRLSYATDLDTIK 374

Query: 515 AIVTRLTDF 523
             + RL  F
Sbjct: 375 RGMERLEKF 383

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* Length = 546

 Score =  118 bits (298), Expect = 1e-28
 Identities = 65/423 (15%), Positives = 120/423 (28%), Gaps = 80/423 (18%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGF----PADPNDIFLTDGASPAVHMMMQLLIRS----E 214
           Y     +  + + I      R+      P++  ++F  +G + A+  + + L  +     
Sbjct: 134 YPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYIFESLKLNGLLKA 193

Query: 215 NDGILCPIPQYPLYSASIALHGGTLVPYYL--DEATGWGLETSEVKKQLEAAKAKGITVR 272
            D +   +P +  Y     L    L    +  D +  W         +L+  K   I  +
Sbjct: 194 GDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQY-PDS---ELDKLKDPAI--K 247

Query: 273 ALVVINPGNPTGQVLAEENQRAIVDFCKK--EGLVLLADEVYQENVYVPEKKFHSFKKVS 330
               +NP NP    + + +   + +   +    L++L D+VY          F S   + 
Sbjct: 248 IFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFAD----DFQSLFAIC 303

Query: 331 R-------------SM-----GY--GEKDI----SLVSFQSVSKG-----YYGECGKRGG 361
                                G     +      +L   Q   K      Y         
Sbjct: 304 PENTLLVYSFSKYFGATGWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRS 363

Query: 362 YMEVTGFSAEVREQIYKVASVNLCSNISGQILASL--VMSPPKVGDESYESYCAERDGIL 419
              +    A+ R       +           L SL  +M        + +     R+  L
Sbjct: 364 LKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDEADEYKHTLKQLIRRRETTL 423

Query: 420 SSLARRAKTLEDAFNSLEGITCNKAEGAM--YLFPRI-QLPEKAI---KAAEAEKTVPDA 473
                             G+   + E A+  Y    +  +  K      +  A K     
Sbjct: 424 --------------YRELGMPPLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTG 469

Query: 474 FYCRRLLNATGIVLVPGSGFGQVPGTWHFRC---TILPQEDKIPAIVTRLTDFHKNFMDK 530
               R+ + TGIVL+PG GFG        R     +   E +  AI   L         +
Sbjct: 470 DMLFRIADETGIVLLPGRGFGS--NRPSGRASLANL--NEYEYAAIGRALRKMADELYAE 525

Query: 531 FRN 533
           +  
Sbjct: 526 YSG 528

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* Length = 427

 Score =  115 bits (289), Expect = 5e-28
 Identities = 48/394 (12%), Positives = 104/394 (26%), Gaps = 61/394 (15%)

Query: 145 IERAWQILDQIPGRATGAYSHSQGI----KGLRDTIAAGIEARDGFPADPNDIFLTDGAS 200
            +        +      +Y  +         L  TI    E      A    I    G +
Sbjct: 74  KQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVT 133

Query: 201 PAVHMMMQLL-------IRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLE 253
             +H ++  L         +    ++   P YP++             +  + A      
Sbjct: 134 QLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVWAGNAA------ 187

Query: 254 TSEVKKQLEAAKAKGIT--VRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEV 311
                                  +V +P NP G +              +  ++     +
Sbjct: 188 ------NYVNV----SNPEQYIEMVTSPNNPEGLL--------------RHAVIKGCKSI 223

Query: 312 YQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAE 371
           Y    Y P   +             ++DI L    ++SK + G  G R G+  +      
Sbjct: 224 YDMVYYWPH--YTPI------KYKADEDILL---FTMSK-FTGHSGSRFGWALIK--DES 269

Query: 372 VREQIYKVASVN-LCSNISGQILASLVMSPPKVG-DESYESYCAERDGILSSLARRAKTL 429
           V   +    + N   +    Q+ +  V+            +           L  R   +
Sbjct: 270 VYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNI 329

Query: 430 EDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVP 489
               +  +  +  +   + Y     ++   +   A  +    +   C +      I    
Sbjct: 330 TALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQN 389

Query: 490 GSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDF 523
           G GF       + R +++  +D    ++  L D 
Sbjct: 390 GVGFEASSR--YVRLSLIKTQDDFDQLMYYLKDM 421

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} Length = 407

 Score =  111 bits (281), Expect = 5e-27
 Identities = 74/403 (18%), Positives = 149/403 (36%), Gaps = 54/403 (13%)

Query: 139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDG 198
           L     +    + + +   ++   Y+ + GI  LR+ +AA ++  D     P +I +T G
Sbjct: 48  LIPRAVLGEIAKEVLEKEPKSVM-YTPANGIPELREELAAFLKKYDHLEVSPENIVITIG 106

Query: 199 ASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVK 258
            + A+ ++ ++LI    D ++   P Y     +    G  +    +D     G+    ++
Sbjct: 107 GTGALDLLGRVLI-DPGDVVITENPSYINTLLAFEQLGAKIEGVPVDND---GMRVDLLE 162

Query: 259 KQLEAAKAKGITVRALVVI-NPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
           ++++  KAKG  V+ +  I    NP G  ++ E ++A+++   K  L+++ D  Y    Y
Sbjct: 163 EKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRY 222

Query: 318 --VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSK----GYYGECGKRGGYMEVTGFSAE 371
                    +     R        I   +    SK    G+      R G++       E
Sbjct: 223 EGGDIVPLKALDNEGRV-------IVAGTL---SKVLGTGF------RIGWIIA---EGE 263

Query: 372 VREQIYKVA-SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLE 430
           + +++      ++ C+    Q +A   +         +E Y  E    L     +   + 
Sbjct: 264 ILKKVLMQKQPIDFCAPAISQYIALEYLK-----RGYFEKYHLEG--ALLGYKEKRDIML 316

Query: 431 DAFNS-LEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVP 489
            A  + L      K    M++     LPE                +   L+   G+V+VP
Sbjct: 317 KALENHLPNAEFTKPIAGMFVM--FFLPE-GADGIS---------FANELMEREGVVVVP 364

Query: 490 GSGF-GQVPGTWHFRCTI-LPQEDKIPAIVTRLTDFHKNFMDK 530
           G  F     G    R     P +++IP  + +L   +K    +
Sbjct: 365 GKPFYTDESGKNAIRLNFSRPSKEEIPIGIKKLAKLYKEKFGE 407

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} Length = 396

 Score =  110 bits (278), Expect = 1e-26
 Identities = 68/377 (18%), Positives = 137/377 (36%), Gaps = 56/377 (14%)

Query: 163 YSHSQGIKGLRDTIAAGIEAR-DGFPADPND-IFLTDGASPAVHMMMQLLI----RSEND 216
           Y  + G+  LR   A  ++ R DG   D ++ I    G+  A+   +Q ++         
Sbjct: 62  YPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVLNPVSDGIKP 121

Query: 217 GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVV 276
            I+ P P Y +Y  +  L GG +  +    A  +  +   + +++   + K      LV 
Sbjct: 122 AIVSPNPFYQIYEGATLLGGGEIH-FANCPAPSFNPDWRSISEEV-WKRTK------LVF 173

Query: 277 IN-PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY 335
           +  P NP+G VL  +  + + D   K G ++ +DE Y E +Y    K     + +  +G 
Sbjct: 174 VCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSE-IYFDGNKPLGCLQAAAQLG- 231

Query: 336 GEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISG--QIL 393
             +   L+ F S+SK      G R G+  V G  AE+ +      +    S +S   Q  
Sbjct: 232 RSRQK-LLMFTSLSKR-SNVPGLRSGF--VAG-DAELLKNFLLYRT-YHGSAMSIPVQRA 285

Query: 394 ASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPR 453
           +       +   ++   Y             + + +      +  +     + + Y++ +
Sbjct: 286 SIAAWDDEQHVIDNRRLY-----------QEKFERVIPILQQVFDVK--LPDASFYIWLK 332

Query: 454 IQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQV-----PGTWHFRCTILP 508
           +  P+             D  + R L     I ++PG    +      PG  + R  ++ 
Sbjct: 333 V--PDGD-----------DLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVA 379

Query: 509 QEDKIPAIVTRLTDFHK 525
                      +   ++
Sbjct: 380 DVATCVKAAEDIVSLYR 396

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* Length = 385

 Score =  108 bits (272), Expect = 6e-26
 Identities = 77/349 (22%), Positives = 130/349 (37%), Gaps = 59/349 (16%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y+   GI  LR+ +A      +G    P +  +T G S A+  + Q ++    D ++   
Sbjct: 64  YAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAIL-DPGDEVIVLS 122

Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT--VRALVVINPG 280
           P +  Y   +   GG +V        G+     E   ++  A    IT   +ALVV +P 
Sbjct: 123 PYWVSYPEMVRFAGGVVVEVETLPEEGFVP-DPE---RVRRA----ITPRTKALVVNSPN 174

Query: 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDI 340
           NPTG V  +E   A+     +    L++DE+Y+  +Y  E +  S  +V         + 
Sbjct: 175 NPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLY--EGEHFSPGRV-------APEH 225

Query: 341 SLVSFQSVSKGYYGEC--GKRGGYMEVTGFSAEVREQIYKVASVNLCSNIS--GQI--LA 394
           +L      +K +      G R GY        EV + +  V+     ++     Q   L 
Sbjct: 226 TLTV-NGAAKAF---AMTGWRIGYA---CGPKEVIKAMASVSR-QSTTSPDTIAQWATLE 277

Query: 395 SLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRI 454
           +L         E+  ++         +  RR   L +   +L G+   +  GA Y+    
Sbjct: 278 AL------TNQEASRAFVEMA---REAYRRRRDLLLEGLTAL-GLKAVRPSGAFYVLMDT 327

Query: 455 QLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFR 503
                            +     RLL A G+ +VPG+ F    G  H R
Sbjct: 328 ---SPIAPD--------EVRAAERLLEA-GVAVVPGTDFA-AFG--HVR 361

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* Length = 391

 Score =  103 bits (259), Expect = 2e-24
 Identities = 57/387 (14%), Positives = 106/387 (27%), Gaps = 52/387 (13%)

Query: 141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS 200
                 R   ++          +        L D I            +   I +  G++
Sbjct: 45  RCTVTIRGCDLMSYFSDMTNLCWFLEPE---LEDAIKDLHGVVGNAATEDRYIVVGTGST 101

Query: 201 PAVHMMMQLLIRSEND---GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEV 257
                 +  L          ++   P Y  Y          +  +  D            
Sbjct: 102 QLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETTYVRSGMYKWEGD------------ 149

Query: 258 KKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY 317
                A           +V +P NP G +        +V+    +   ++ D  Y    Y
Sbjct: 150 -----AWGFDKKGPYIELVTSPNNPDGTIR-----ETVVNRPDDDEAKVIHDFAYYWPHY 199

Query: 318 VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY 377
            P  +              + DI L    + SK   G  G R G+  V     EV +++ 
Sbjct: 200 TPITRRQ------------DHDIML---FTFSK-ITGHAGSRIGWALVK--DKEVAKKMV 241

Query: 378 KVASVN-LCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL 436
           +   VN +  +   Q+  + +++  K   +S              +  R + L +     
Sbjct: 242 EYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKES 301

Query: 437 EGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQV 496
           +  T  K   A   +    L       A A     +       L    ++   G   G  
Sbjct: 302 DAFTLPKYPEAFCNYFGKSLES---YPAFAWLGTKEETDLVSELRRHKVMSRAGERCGSD 358

Query: 497 PGTWHFRCTILPQEDKIPAIVTRLTDF 523
               H R ++L +ED     + RL + 
Sbjct: 359 KK--HVRVSMLSREDVFNVFLERLANM 383

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 Length = 425

 Score =  103 bits (260), Expect = 3e-24
 Identities = 78/437 (17%), Positives = 154/437 (35%), Gaps = 74/437 (16%)

Query: 119 REVLALCDHPSILDRSETQG-----LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLR 173
           RE+L        +  S   G      F    +    + + +     T  YS ++G   L+
Sbjct: 34  REILKFAADKDAI--SFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLK 91

Query: 174 DTIAAGIEARDGFPA-DPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI 232
             I   +E   G    D +++  T G+  A+ ++ +L +  +    +   P Y     + 
Sbjct: 92  QQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFL-DDESYCVLDDPAYLGAINAF 150

Query: 233 ALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRA-LVVINP--GNPTGQVLAE 289
             +    V   L++    G++ + ++++L      G   +   + +     NP G   + 
Sbjct: 151 RQYLANFVVVPLEDD---GMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSL 207

Query: 290 ENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVS 349
           E ++A+V+  +K  L ++ D+ Y    Y  E            +G  E+ + L +F   S
Sbjct: 208 EKRKALVEIAEKYDLFIVEDDPYGALRYEGE-TVDPIF----KIGGPERVVLLNTF---S 259

Query: 350 K----GYYGECGKRGGYMEVTGFSAEVREQIYKVA-SVNLCSNISGQILASLVMSPPKVG 404
           K    G       R G +     S E   +I +   S +LCS      LA+  +      
Sbjct: 260 KVLAPGL------RIGMVAG---SKEFIRKIVQAKQSADLCSPAITHRLAARYLE----- 305

Query: 405 DESYESYCAERDGILSSLARRAKTLEDA----FNSLEGITCNKAEGAMYLFPRIQLPEKA 460
                         +    R+   + +A    F+ + G+   K+EG ++++  + LPE  
Sbjct: 306 RYDLLEQLKP---TIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIW--LTLPEGF 360

Query: 461 IKAAEAEKTVPDAFYCRRLLN---ATGIVLVPGSGF-GQVPGTWHFR---CTILPQEDKI 513
                      D      +        +  VPG  F      +   R   C   P ++KI
Sbjct: 361 -----------DT---WEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCL--PPDEKI 404

Query: 514 PAIVTRLTDFHKNFMDK 530
              + RL +    +  +
Sbjct: 405 VEGIKRLREVVLEYGKE 421

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* Length = 448

 Score =  103 bits (259), Expect = 7e-24
 Identities = 84/421 (19%), Positives = 166/421 (39%), Gaps = 68/421 (16%)

Query: 119 REVLALCDHPSILDRSETQG-----LFSADSIERAWQ-ILDQIPGRATGAYSHSQGIKGL 172
           RE+L L +   I+  S   G      F  + I      I+++   +A   Y  ++G   L
Sbjct: 67  RELLKLVETSDII--SLAGGLPNPKTFPKEIIRDILVEIMEKYADKALQ-YGTTKGFTPL 123

Query: 173 RDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI 232
           R+T+      +    +  NDI +T G+  A+ ++ ++ +    D ++   P Y     + 
Sbjct: 124 RETLMK-WLGKRYGISQDNDIMITSGSQQALDLIGRVFLN-PGDIVVVEAPTYLAALQAF 181

Query: 233 ALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLAEEN 291
             +    +   LD+    G++   ++++L+  K++G  V+ +  +    NP G  + E+ 
Sbjct: 182 NFYEPQYIQIPLDDE---GMKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDR 238

Query: 292 QRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSK- 350
           ++ +++   +   +++ D+ Y E  Y         K    ++    + I L +F   SK 
Sbjct: 239 RKYLLELASEYDFIVVEDDPYGELRYSGN-PEKKIK----ALDNEGRVIYLGTF---SKI 290

Query: 351 ---GYYGECGKRGGYMEVTGFSAEVREQIYKVA-SVNLCSNISGQILASLVMSPPKVGDE 406
              G+      R G+M        +  ++     S +LC+N+ GQ++A   +        
Sbjct: 291 LAPGF------RIGWMVG---DPGIIRKMEIAKQSTDLCTNVFGQVVAWRYVD-----GG 336

Query: 407 SYESYCAERDGILSSLARRAKTLEDAFNSL--EGITCNKAEGAMYLFPRIQLPEKAIKAA 464
             E +  E   I      R   + +A      EG+   K EG M+++  + LP+      
Sbjct: 337 YLEKHIPE---IRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGMFIW--VTLPDGI---- 387

Query: 465 EAEKTVPDAFYCRRLLNAT---GIVLVPGSGFG-QVPGTWHFR-CTILPQEDKIPAIVTR 519
                  D+   +++L      G+  VPG  F          R       EDKI   + R
Sbjct: 388 -------DS---KKMLERAIKKGVAYVPGEAFYAHRDVKNTMRLNFTYVDEDKIMEGIKR 437

Query: 520 L 520
           L
Sbjct: 438 L 438

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* Length = 397

 Score =  101 bits (255), Expect = 1e-23
 Identities = 80/430 (18%), Positives = 154/430 (35%), Gaps = 76/430 (17%)

Query: 119 REVLALCDHPSILDRSETQG-----LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLR 173
           RE+L L   P IL  S   G     LF  +    A   + +  G     YS ++G   LR
Sbjct: 23  RELLKLTQRPGIL--SFAGGLPAPELFPKEEAAEAAARILREKGEVALQYSPTEGYAPLR 80

Query: 174 DTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA 233
             +A  I         P ++ +T G+  A+ ++ ++ +  E   +L   P Y     +  
Sbjct: 81  AFVAEWIGV------RPEEVLITTGSQQALDLVGKVFLD-EGSPVLLEAPSYMGAIQAFR 133

Query: 234 LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP--GNPTGQVLAEEN 291
           L G   +     E    G +   +++ L+  + +       + + P   NPTG +     
Sbjct: 134 LQGPRFLTVPAGEE---GPDLDALEEVLKRERPR------FLYLIPSFQNPTGGLTPLPA 184

Query: 292 QRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSK- 350
           ++ ++    + GLV++ D+ Y+E +Y  E +  S  +++R        I L SF   SK 
Sbjct: 185 RKRLLQMVMERGLVVVEDDAYRE-LYFGEARLPSLFELARE-AGYPGVIYLGSF---SKV 239

Query: 351 ---GYYGECGKRGGYMEVTGFSAEVREQIYKVA-SVNLCSNISGQILASLVMSPPKVGDE 406
              G       R  +        E  +++ +     +L + +  Q+L   ++       E
Sbjct: 240 LSPGL------RVAFAVA---HPEALQKLVQAKQGADLHTPMLNQMLVHELLK------E 284

Query: 407 SYESYCAERDGILSSLARRAKTLEDAFNSL--EGITCNKAEGAMYLFPRIQLPEKAIKAA 464
            +         +      +A+ +  A +    + +   + +G M+++  ++LP+      
Sbjct: 285 GFSERLER---VRRVYREKAQAMLHALDREVPKEVRYTRPKGGMFVW--MELPKGL---- 335

Query: 465 EAEKTVPDAFYCRRLLN---ATGIVLVPGSGF-GQVPGTWHFR-CTILPQEDKIPAIVTR 519
                   A     L        +  VPG  F     G    R        + I   V R
Sbjct: 336 -------SA---EGLFRRALEENVAFVPGGPFFANGGGENTLRLSYATLDREGIAEGVRR 385

Query: 520 LTDFHKNFMD 529
           L    K  + 
Sbjct: 386 LGRALKGLLA 395

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* Length = 425

 Score = 85.8 bits (213), Expect = 4e-18
 Identities = 63/382 (16%), Positives = 134/382 (35%), Gaps = 62/382 (16%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFP-------ADPNDIFLTDGASPAVHMMMQLLIRSEN 215
           YS S GI  L   +          P           D+ +T G+   +  + +++I +  
Sbjct: 74  YSPSAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMII-NPG 132

Query: 216 DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRA-- 273
           D +L   P Y     S+   G  ++    DE+   G+    ++  L   K +        
Sbjct: 133 DNVLLDEPAYSGTLQSLHPLGCNIINVASDES---GIVPDSLRDILSRWKPEDAKNPQKN 189

Query: 274 ---LVVINP--GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKK 328
               +   P   NPTG  L  E ++ I +  +K   +++ D+ Y    +    +  +F  
Sbjct: 190 TPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQFNKF-RVPTFL- 247

Query: 329 VSRSMGYGEKDISLVSFQSVSK----GYYGECGKRGGYMEVTGFSAEVREQIYKVA-SVN 383
              SM    + I   SF   SK    G       R G+  +TG    + E++        
Sbjct: 248 ---SMDVDGRVIRADSF---SKIISSGL------RIGF--LTG-PKPLIERVILHIQVST 292

Query: 384 LCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL--EGITC 441
           L  +   Q++ S ++   + G+E + ++      ++   + +   +  A +         
Sbjct: 293 LHPSTFNQLMISQLLH--EWGEEGFMAHVDR---VIDFYSNQKDAILAAADKWLTGLAEW 347

Query: 442 NKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGF--GQVPGT 499
           +     M+L+  I++        E            + +   G++++PG+ F       +
Sbjct: 348 HVPAAGMFLW--IKVKG-INDVKE--------LIEEKAVKM-GVLMLPGNAFYVDSSAPS 395

Query: 500 WHFRCTI-LPQEDKIPAIVTRL 520
            + R +      +++      L
Sbjct: 396 PYLRASFSSASPEQMDVAFQVL 417

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} Length = 422

 Score = 84.3 bits (209), Expect = 1e-17
 Identities = 65/444 (14%), Positives = 125/444 (28%), Gaps = 97/444 (21%)

Query: 119 REVLALCDHPSILDRSETQGL-------FSADSIERAWQILDQIPGRATGAYSHSQGIKG 171
            +   L      L    T+G         S D +           G     Y    GI  
Sbjct: 23  AKYAELKAKNLSL--DLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIAD 80

Query: 172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS---------------END 216
           +R+  A  +          + +   DG+S    +M  L+  S               E  
Sbjct: 81  IRELWAEALGL------PADLVVAQDGSSLN--IMFDLISWSYTWGNNDSSRPWSAEEKV 132

Query: 217 GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVV 276
             LCP+P Y  +       G  ++   + +    G +   V++ ++  + KG+      V
Sbjct: 133 KWLCPVPGYDRHFTITEHFGFEMINVPMTDE---GPDMGVVRELVKDPQVKGM----WTV 185

Query: 277 INPGNPTGQVLAEENQRAIVDFCKK-EGLVLLADEVYQENVYVPE-KKFHSFKKVSRSMG 334
              GNPTG   +E+  R + +         ++ D  Y  +    E    H+  + +++ G
Sbjct: 186 PVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAG 245

Query: 335 YGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA-SVNLCSNISGQIL 393
              +   + S    SK  +   G    +      S E  E     A    +  N   Q+ 
Sbjct: 246 NPNRFWFMSST---SKITHA--GSGVSFFAS---SKENIEWYASHANVRGIGPNKLNQLA 297

Query: 394 ASLVMSPPKVGDESYESYCAERDGILSSLAR-----RAK------TLEDAFNSLEGITCN 442
            +               +  +  G+ + + +       K       L+   +        
Sbjct: 298 HA--------------QFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWT 343

Query: 443 KAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGF---GQVPGT 499
              G  ++   + +         A + V  A          GI L            P  
Sbjct: 344 SPTGGYFIS--VDVVPGT-----ASRVVELA-------KEAGIALTGAGSSFPLHNDPNN 389

Query: 500 WHFR---CTILPQEDKIPAIVTRL 520
            + R       P   ++   +   
Sbjct: 390 ENIRLAPSL--PPVAELEVAMDGF 411

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} Length = 423

 Score = 80.5 bits (199), Expect = 2e-16
 Identities = 56/388 (14%), Positives = 118/388 (30%), Gaps = 62/388 (15%)

Query: 157 GRATGAYS-HSQGIKGLRDTIAA-------GIEARDGFPADPNDIFLTDGASPAVHMMMQ 208
           G     Y     G+   R   A         +   +    +   + LT      V     
Sbjct: 59  GLDLRNYPGGVAGLPSARALFAGYLDVKAENVLVWNNSSLELQGLVLTFALLHGVRGSTG 118

Query: 209 LLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKG 268
             + S+   ++  +P Y  +   +   G  L+   +      G +       +E      
Sbjct: 119 PWL-SQTPKMIVTVPGYDRHFLLLQTLGFELLTVDMQSD---GPDVDA----VERLAGTD 170

Query: 269 ITVRALVVI-NPGNPTGQVLAEENQRAIVD-FCKKEGLVLLADEVYQENVYVPEKKFHSF 326
            +V+ ++ +    NP G+ ++ E  R +           + AD+ Y+ +  V E +    
Sbjct: 171 PSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPV 230

Query: 327 KKVSRSMGYGEKD--ISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA-SVN 383
             V  +   G  D      S    SK  +   G   G++     S +    + K   + +
Sbjct: 231 NFVVLARDAGYPDRAFVFAST---SKITFA--GAGLGFVAS---SEDNIRWLSKYLGAQS 282

Query: 384 LCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNS-----LEG 438
           +  N   Q      +          E    +     + +A + + +++   +      E 
Sbjct: 283 IGPNKVEQARHVKFL---TEYPGGLEGLMRD---HAAIIAPKFRAVDEVLRAELGEGGEY 336

Query: 439 ITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGF---GQ 495
            T    +G  ++   +   E       A++ V  A        A G+ L P       GQ
Sbjct: 337 ATWTLPKGGYFIS--LDTAEPV-----ADRVVKLA-------EAAGVSLTPAGATYPAGQ 382

Query: 496 VPGTWHFR---CTILPQEDKIPAIVTRL 520
            P   + R       P  +++   +  +
Sbjct: 383 DPHNRNLRLAPTR--PPVEEVRTAMQVV 408

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} Length = 377

 Score = 76.8 bits (190), Expect = 2e-15
 Identities = 33/187 (17%), Positives = 65/187 (34%), Gaps = 26/187 (13%)

Query: 170 KGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS 229
             L    A     R G+ A P  IF        +++ +          ++ P P YP + 
Sbjct: 61  SLLSQATAEFYADRYGYQARPEWIFPIPDVVRGLYIAIDHFTP-AQSKVIVPTPAYPPFF 119

Query: 230 ASIALHGGTLVP----YYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ 285
             ++      +       ++      L        +E     G   R++++ NP NP G 
Sbjct: 120 HLLSATQREGIFIDATGGIN------LH------DVEKGFQAG--ARSILLCNPYNPLGM 165

Query: 286 VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSF 345
           V A E    + D   +    +L DE++   V+  + +      VS +       +  ++ 
Sbjct: 166 VFAPEWLNELCDLAHRYDARVLVDEIHAPLVF--DGQHTVAAGVSDTA----ASVC-ITI 218

Query: 346 QSVSKGY 352
            + SK +
Sbjct: 219 TAPSKAW 225

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} Length = 421

 Score = 76.4 bits (189), Expect = 4e-15
 Identities = 63/352 (17%), Positives = 120/352 (34%), Gaps = 74/352 (21%)

Query: 172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS 231
           L   +         +     DI   DG  PA+ + +Q     + D +L   P Y  ++ +
Sbjct: 101 LYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQAF-SEKGDAVLINSPVYYPFART 159

Query: 232 IALHGGTLVP---------YYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
           I L+   LV          + +D              QLE        V+  ++ +P NP
Sbjct: 160 IRLNDHRLVENSLQIINGRFEIDFE------------QLEK-DIIDNNVKIYLLCSPHNP 206

Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL 342
            G+V   ++   I + CKK G++L++DE++Q+         HS   +  S     KD + 
Sbjct: 207 GGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLAL-FGNTHHSLNTLDASY----KDFT- 260

Query: 343 VSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYK------VASVNLCSNISGQILASL 396
           +   S +K  +   G +  +  +   +  +R +            V     +     A  
Sbjct: 261 IILSSATKT-FNIAGTKNSFAIIQ--NESLRRKFQYRQLANNQHEVPTVG-MIATQAA-- 314

Query: 397 VMSPPKVGDESYESYCAE-RDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYL----F 451
                      ++ Y     + + + +    K +     +   I   + EG  YL    F
Sbjct: 315 -----------FQ-YGKPWLEELKTVIEGNIKLVIKELEAKTKIKVMEPEGT-YLVWLDF 361

Query: 452 PRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFR 503
               + +  +                +L N   +VL  G+ FG+  G +  R
Sbjct: 362 SAYAIAQPQLS--------------EKLQNEAKVVLNDGAHFGK-EGKYFAR 398

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 Length = 390

 Score = 75.2 bits (186), Expect = 8e-15
 Identities = 53/354 (14%), Positives = 120/354 (33%), Gaps = 79/354 (22%)

Query: 172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS 231
               IA     +     D   +         V  +++       +G++   P Y  +  +
Sbjct: 69  FLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSE-TGEGVVIHTPAYDAFYKA 127

Query: 232 IALHGGTLVP---------YYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
           I  +  T++P         ++ D              +LEA        + +++ +P NP
Sbjct: 128 IEGNQRTVMPVALEKQADGWFCDMG------------KLEA-VLAKPECKIMLLCSPQNP 174

Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL 342
           TG+V   +    + D C++ G+ +++DE++ + V+  E+    +  V+R           
Sbjct: 175 TGKVWTCDELEIMADLCERHGVRVISDEIHMDMVW-GEQPHIPWSNVAR-------GDW- 225

Query: 343 VSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYK-------VASVNLCSNISGQILAS 395
               S SK  +      G Y  +   ++  R+           ++S ++ + ++  I A 
Sbjct: 226 ALLTSGSKS-FNIPALTGAYGIIE--NSSSRDAYLSALKGRDGLSSPSVLA-LTAHIAA- 280

Query: 396 LVMSPPKVGDESYESYCAE-RDGILSSLARRAKTLEDAFNS-LEGITCNKAEGAMYL--- 450
                       Y+   A   D +   L      + D  N+    +     +   YL   
Sbjct: 281 ------------YQ-QGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQST-YLAWL 326

Query: 451 -FPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFR 503
               + + + A++              + L+    + ++PG  +G+  G    R
Sbjct: 327 DLRPLNIDDNALQ--------------KALIEQEKVAIMPGYTYGE-EGRGFVR 365

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* Length = 392

 Score = 74.8 bits (185), Expect = 1e-14
 Identities = 69/353 (19%), Positives = 119/353 (33%), Gaps = 75/353 (21%)

Query: 172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS 231
           L   +    ++   +  D  DI   +G  PA+ + +Q     E + +L   P YP ++ S
Sbjct: 71  LLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAF-TKEGEAVLINSPVYPPFARS 129

Query: 232 IALHGGTLVP---------YYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
           + L+   LV          + +D       E      QLE        V+  ++ NP NP
Sbjct: 130 VRLNNRKLVSNSLKEENGLFQID------FE------QLEN-DIVENDVKLYLLCNPHNP 176

Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL 342
            G+V   E    I   C+K  ++L++DE++Q+       +  SF  VS       KD + 
Sbjct: 177 GGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTL-FGHEHVSFNTVSPDF----KDFA- 230

Query: 343 VSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYK------VASVNLCSNISGQILASL 396
           +   S +K  +   G +  Y  +   +  +  Q            V+          A  
Sbjct: 231 LVLSSATKT-FNIAGTKNSYAIIE--NPTLCAQFKHQQLVNNHHEVSSLG-YIATETA-- 284

Query: 397 VMSPPKVGDESYESYCAE-RDGILSSLARRAKTLEDAFNS-LEGITCNKAEGAMYL---- 450
                      Y  Y       + + L    +   + F      +   K +G  YL    
Sbjct: 285 -----------YR-YGKPWLVALKAVLEENIQFAVEYFAQEAPRLKVMKPQGT-YLIWLD 331

Query: 451 FPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFR 503
           F    L + A+                 L +   ++L  GS +G   G  H R
Sbjct: 332 FSDYGLTDDALF--------------TLLHDQAKVILNRGSDYGS-EGELHAR 369

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* Length = 399

 Score = 73.7 bits (182), Expect = 3e-14
 Identities = 62/353 (17%), Positives = 124/353 (35%), Gaps = 75/353 (21%)

Query: 172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS 231
            + T+   ++ R  +    + I  T G  PAV   ++       DG++   P Y  +  +
Sbjct: 71  YKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREF-TKPGDGVIIITPVYYPFFMA 129

Query: 232 IALHGGTLVP---------YYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
           I      ++          Y +D              +LE   +K    +AL+  +P NP
Sbjct: 130 IKNQERKIIECELLEKDGYYTIDFQ------------KLEK-LSKDKNNKALLFCSPHNP 176

Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL 342
            G+V  ++  + I D   K  L+L +DE++ + +  P  +   F+ +   +     D + 
Sbjct: 177 VGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIM-PGYEHTVFQSIDEQL----ADKT- 230

Query: 343 VSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYK------VASVNLCSNISGQILASL 396
           ++F + SK  +   G     + +   + ++RE+  K                    +   
Sbjct: 231 ITFTAPSKT-FNIAGMGMSNIIIK--NPDIRERFTKSRDATSGMPFTTLG-YKACEIC-- 284

Query: 397 VMSPPKVGDESYESYCAE-RDGILSSLARRAKTLEDAFNS-LEGITCNKAEGAMYL---- 450
                      Y+  C +  DG +  + +  + ++D F      I     EG  YL    
Sbjct: 285 -----------YK-ECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGT-YLQWID 331

Query: 451 FPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFR 503
           F  +++  KA++                +++   I    G  FG   G    R
Sbjct: 332 FRALKMDHKAME--------------EFMIHKAQIFFDEGYIFGD-GGIGFER 369

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} Length = 391

 Score = 73.3 bits (181), Expect = 3e-14
 Identities = 61/353 (17%), Positives = 114/353 (32%), Gaps = 75/353 (21%)

Query: 172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS 231
               +A   E         +      G  PA+  M++    S  D IL   P Y ++ + 
Sbjct: 67  YYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQF-TSPGDQILVQEPVYNMFYSV 125

Query: 232 IALHGGTLVP---------YYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
           I  +G  ++          Y ++ A             LE  K    +VR +V  NP NP
Sbjct: 126 IEGNGRRVISSDLIYENSKYSVNWA------------DLEE-KLATPSVRMMVFCNPHNP 172

Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL 342
            G   +EE  + I + C K  ++L++DE++ + V   ++       V        K+   
Sbjct: 173 IGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVL-TDEDITPAFTVDWDA----KNWV- 226

Query: 343 VSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYK------VASVNLCSNISGQILASL 396
           VS  S SK  +           +   + ++R +  +      +   NL + I   I A  
Sbjct: 227 VSLISPSKT-FNLAALHAACAIIP--NPDLRARAEESFFLAGIGEPNLLA-IPAAIAA-- 280

Query: 397 VMSPPKVGDESYESYCAE-RDGILSSLARRAKTLEDAFNS-LEGITCNKAEGAMYL---- 450
                      YE    +    +   L        +     +  +    +  + YL    
Sbjct: 281 -----------YE-EGHDWLRELKQVLRDNFAYAREFLAKEVPEVKVLDSNAS-YLAWVD 327

Query: 451 FPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFR 503
              + +  +                 + L   TG+++  G+G+    G    R
Sbjct: 328 ISALGMNAEDFC--------------KYLREKTGLIISAGNGYRG-NGHEFVR 365

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} Length = 427

 Score = 73.2 bits (180), Expect = 5e-14
 Identities = 67/451 (14%), Positives = 126/451 (27%), Gaps = 106/451 (23%)

Query: 119 REVLALCDHPSILD------RSETQGLFSADSIERAWQILDQIPGRATGA--YSHSQGIK 170
           R+   L      LD       SE   L  AD +       D      T    Y    GI 
Sbjct: 24  RKFDELKSKNLKLDLTRGKPSSEQ--LDFADELLALPGKGDFKAADGTDVRNYGGLDGIV 81

Query: 171 GLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS---------------EN 215
            +R   A  +            +   D +S    +M  ++  S               E 
Sbjct: 82  DIRQIWADLLGV------PVEQVLAGDASSLN--IMFDVISWSYIFGNNDSVQPWSKEET 133

Query: 216 DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALV 275
              +CP+P Y  + +     G  ++   ++E    G +   V++ ++  + KG+     V
Sbjct: 134 VKWICPVPGYDRHFSITERFGFEMISVPMNED---GPDMDAVEELVKNPQVKGM----WV 186

Query: 276 VINPGNPTGQVLAEENQRAIVD-FCKKEGLVLLADEVYQENVYVPEK-KFHSFKKVSRSM 333
           V    NPTG  + E+  + +           ++ D  Y  +    E  +      +  + 
Sbjct: 187 VPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAA 246

Query: 334 GYGEKDISLVSFQSVSK----GYYGECGKRGGYMEVTGFSAEVREQIYKVA-SVNLCSNI 388
           G   +  +  S    SK    G          +      SAE R+     A    +  N 
Sbjct: 247 GNPNRFWAFTST---SKITLAGA------GVSFF---LTSAENRKWYTGHAGIRGIGPNK 294

Query: 389 SGQILASLVMSPPKVGDESYESYCAERDGILSSLAR-----RAK------TLEDAFNSLE 437
             Q+  +               Y  + +G+ + + +       K       L+       
Sbjct: 295 VNQLAHA--------------RYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYG 340

Query: 438 GITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGF---G 494
                   G  ++   + +         A +    A          GI L          
Sbjct: 341 VAQWTVPAGGYFIS--LDVVPGT-----ASRVAELA-------KEAGIALTGAGSSYPLR 386

Query: 495 QVPGTWHFR---CTILPQEDKIPAIVTRLTD 522
           Q P   + R       P  +++   +  +  
Sbjct: 387 QDPENKNLRLAPSL--PPVEELEVAMDGVAT 415

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* Length = 391

 Score = 71.8 bits (177), Expect = 1e-13
 Identities = 58/376 (15%), Positives = 129/376 (34%), Gaps = 79/376 (21%)

Query: 151 ILDQIPGRAT-GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQL 209
           I+D +  R     Y ++       ++I   +  R  +      +  + G  PA+ +++  
Sbjct: 50  IIDSLKNRLEQEIYGYTTRPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLINE 109

Query: 210 LIRSENDGILCPIPQYPLYSASIALHGGTLVP----------YYLDEATGWGLETSEVKK 259
           L    ND I+   P Y  +++ +  +   L+           Y +D              
Sbjct: 110 L-TKANDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYE------------ 156

Query: 260 QLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVP 319
            +E  K K   V+  ++ NP NP G+V  ++  + + D C K  + +++DE++ + +   
Sbjct: 157 DIEN-KIKD--VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIIL-K 212

Query: 320 EKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYK- 378
           + K      +S+      +  + ++  + +K  +   G +  Y+ +     +  + +   
Sbjct: 213 KHKHIPMASISKEF----EKNT-ITCMAPTKT-FNIAGLQSSYVVLP--DEKDYKLLDDA 264

Query: 379 -----VASVNLCSNISGQILASLVMSPPKVGDESYESYCAE-RDGILSSLARRAKTLEDA 432
                +   N  S +     +             Y        +  L  L          
Sbjct: 265 FTRIDIKRNNCFS-LVATEAS-------------YN-NGESWLESFLEYLESNIDFAIKY 309

Query: 433 FNS-LEGITCNKAEGAMYL----FPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVL 487
            N  +  +   K EG  YL    F  + L ++ ++                L+    + L
Sbjct: 310 INENMPKLKVRKPEGT-YLLWVDFSALGLSDEELE--------------SILVQKGKVAL 354

Query: 488 VPGSGFGQVPGTWHFR 503
             G+ FG   G+ + R
Sbjct: 355 NQGNSFGI-GGSGYQR 369

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* Length = 364

 Score = 70.2 bits (173), Expect = 3e-13
 Identities = 56/346 (16%), Positives = 117/346 (33%), Gaps = 71/346 (20%)

Query: 172 LRDTIAA--GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS 229
           L   +A    +          + I   +G + ++  +   L   +    +   P +  Y 
Sbjct: 64  LHQALARHHQV--------PASWILAGNGETESIFTVASGL---KPRRAMIVTPGFAEYG 112

Query: 230 ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLA 288
            ++A  G  +  + L EA GW L  + ++                + +  P NPTG +  
Sbjct: 113 RALAQSGCEIRRWSLREADGWQLTDAILEALTPDLD--------CLFLCTPNNPTGLLPE 164

Query: 289 EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSV 348
               +AI D CK   + L+ DE + +  ++P +        +  +   + +  +   +S+
Sbjct: 165 RPLLQAIADRCKSLNINLILDEAFID--FIPHE--------TGFIPALKDNPHIWVLRSL 214

Query: 349 SKGYYGECGKRGGYMEVTGFSAEVREQIYKVA---SVNLCSNISGQILASLVMSPPKVGD 405
           +K +Y   G R GY+           ++ +     SVN  + ++G    +L        D
Sbjct: 215 TK-FYAIPGLRLGYL--VNSDDAAMARMRRQQMPWSVNALAALAG--EVAL-------QD 262

Query: 406 ESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAE 465
            +++            L         A   L  +T      A YL   ++   + I    
Sbjct: 263 SAWQQATWHW------LREEGARFYQALCQLPLLTVYPGR-ANYLL--LRCEREDIDLQR 313

Query: 466 AEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTI-LPQE 510
                       RLL    I++   + +  +   + +R  I    +
Sbjct: 314 ------------RLLTQ-RILIRSCANYPGLDSRY-YRVAIRSAAQ 345

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* Length = 356

 Score = 68.4 bits (168), Expect = 1e-12
 Identities = 50/272 (18%), Positives = 100/272 (36%), Gaps = 49/272 (18%)

Query: 172 LRDTIAA--GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS 229
           + +  A   G+         P  + ++ GA   + ++++       D IL   P Y +YS
Sbjct: 63  VIENYAQYAGV--------KPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYS 114

Query: 230 ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLA 288
            S    G         +   W L+   +  +L+  K        +V + +P NPTGQ++ 
Sbjct: 115 VSAETIGVECRTVPTLD--NWQLDLQGISDKLDGVK--------VVYVCSPNNPTGQLIN 164

Query: 289 EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSV 348
            ++ R +++  + + +V+  DE Y E  + P+              Y      L   +++
Sbjct: 165 PQDFRTLLELTRGKAIVVA-DEAYIE--FCPQASL-----AGWLAEYP----HLAILRTL 212

Query: 349 SKGYYGECGKRGGYMEVTGFSAEVREQIYKV-ASVNLCSNISGQILASLVMSPPKVGDES 407
           SK  +   G R G+      + EV   + KV A   L  +     +A+  +S      + 
Sbjct: 213 SKA-FALAGLRCGFT---LANEEVINLLMKVIAPYPL--STPVADIAAQALS-----PQG 261

Query: 408 YESYCAERDGILSSLARRAKTLEDAFNSLEGI 439
             +       I++        L  A   +  +
Sbjct: 262 IVAMRERVAQIIAEREY----LIAALKEIPCV 289

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} Length = 361

 Score = 66.8 bits (164), Expect = 4e-12
 Identities = 42/218 (19%), Positives = 88/218 (40%), Gaps = 41/218 (18%)

Query: 172 LRDTIAA--GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS 229
           L  +I     +            I L +GAS  + + + L      + IL  +P Y  Y 
Sbjct: 66  LNKSIENYLKL--------KDIGIVLGNGASEIIELSISLF-----EKILIIVPSYAEYE 112

Query: 230 ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLA 288
            +   HG ++V  YLDE     ++  ++  +++            V+I NP NP G ++ 
Sbjct: 113 INAKKHGVSVVFSYLDE--NMCIDYEDIISKIDDVD--------SVIIGNPNNPNGGLIN 162

Query: 289 EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSV 348
           +E    ++   +++   ++ DE + E  +  +       ++     Y      L   +++
Sbjct: 163 KEKFIHVLKLAEEKKKTIIIDEAFIE--FTGDPSSSFVGEIKN---YS----CLFIIRAM 213

Query: 349 SKGYYGECGKRGGYMEVTGFSAEVREQIYKVA---SVN 383
           +K ++   G R GY  +T  + E+  +I       ++N
Sbjct: 214 TK-FFAMPGIRFGYG-ITN-NKEIAAKIKAKQNPWNIN 248

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} Length = 350

 Score = 59.9 bits (146), Expect = 6e-10
 Identities = 57/345 (16%), Positives = 111/345 (32%), Gaps = 77/345 (22%)

Query: 172 LRDTIAA--GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS 229
           LR  +A    +        D N I +T+G + A + + Q          L  IP +  Y 
Sbjct: 55  LRQMLAKRNSV--------DNNAILVTNGPTAAFYQIAQAF---RGSRSLIAIPSFAEYE 103

Query: 230 ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAE 289
            +  ++   +  Y  +E               EA  +    +    + NP NP G++L  
Sbjct: 104 DACRMYEHEVCFYPSNEDI------------GEADFSN---MDFCWLCNPNNPDGRLLQR 148

Query: 290 ENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVS 349
                +++       VL  D+ Y    +  E+               +   +LV   S S
Sbjct: 149 TEILRLLNDHPDTTFVL--DQSYVS--FTTEEVI--------RPADIKGRKNLVMVYSFS 196

Query: 350 KGYYGECGKRGGYMEVTGFSAEVREQIYKVA---SVNLCSNISGQILASLVMSPPKVGDE 406
              YG  G R GY+ V   + +  +++   +   +VN  +       A  ++  P     
Sbjct: 197 H-AYGIPGLRIGYI-VA--NKDFMKRVAAFSTPWAVNALA----IEAAKFILIHPAQFTL 248

Query: 407 SYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEA 466
               +                    A N L+G+  + +    +    ++L +    AAE 
Sbjct: 249 PIRKWQRNT-----------VDFITALNRLDGVEVHPSG-TTFFL--LRLKKG--TAAEL 292

Query: 467 EKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQED 511
                     + +L    +++   S F  +  ++  R T      
Sbjct: 293 ---------KKYMLEEYNMLIRDASNFRGLDESY-VRITTQRPAQ 327

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} Length = 367

 Score = 59.1 bits (144), Expect = 1e-09
 Identities = 58/275 (21%), Positives = 98/275 (35%), Gaps = 50/275 (18%)

Query: 172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS 231
           LR  +          PA    + L +G+   + M+     R     ++ P+P + +Y+ S
Sbjct: 72  LRAKLKE----VMQVPAGME-VLLGNGSDEIISMLALAAAR-PGAKVMAPVPGFVMYAMS 125

Query: 232 IALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLAEE 290
               G   V   L     + L+   +   +   +        +V +  P NPTG +    
Sbjct: 126 AQFAGLEFVGVPLRA--DFTLDRGAMLAAMAEHQPA------IVYLAYPNNPTGNLFDAA 177

Query: 291 NQRAIVDFC---KKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQS 347
           +  AIV          LV++ DE YQ   +  E    S+      M       +L+  ++
Sbjct: 178 DMEAIVRAAQGSVCRSLVVV-DEAYQP--FAQE----SW------MSRLTDFGNLLVMRT 224

Query: 348 VSKGYYGECGKRGGYMEVTGFSAEVREQIYKV-ASVNLCSNISGQILASLVMSPPKVGDE 406
           VSK   G  G R GY+       +  EQ+ KV    N+  N+  +  A   +    V DE
Sbjct: 225 VSK--LGLAGIRLGYV---AGDPQWLEQLDKVRPPYNV--NVLTEATALFALEHVAVLDE 277

Query: 407 SYESYCAERDGILSSLARRAKTLEDAFNSLEGITC 441
                 AER             + +   +  G+T 
Sbjct: 278 QAAQLRAERS-----------RVAEGMAAHGGVTV 301

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A Length = 369

 Score = 56.4 bits (137), Expect = 9e-09
 Identities = 48/261 (18%), Positives = 94/261 (36%), Gaps = 42/261 (16%)

Query: 172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR---SENDGILCPIPQYPLY 228
           LRD +AA I  + G     ++++  +G S  +   +Q L++         L   P Y ++
Sbjct: 74  LRDELAAYITKQTGVAVTRDNLWAANG-SNEI---LQQLLQAFGGPGRTALGFQPSYSMH 129

Query: 229 SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI--NPGNPTGQV 286
                      +         + ++       ++ A  +    +  +V    P NPTG V
Sbjct: 130 PILAKGTHTEFIAVSRGA--DFRID-------MDVALEEIRAKQPDIVFVTTPNNPTGDV 180

Query: 287 LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQ 346
            + ++   I++     G+V++ DE Y E  + P          +    Y  K   LV  +
Sbjct: 181 TSLDDVERIIN--VAPGIVIV-DEAYAE--FSPSPSA-----TTLLEKYPTK---LVVSR 227

Query: 347 SVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA---SVNLCSNISGQILASLVMSPPKV 403
           ++SK  +   G R GY      +    + +  V     ++  S    Q  A + +     
Sbjct: 228 TMSKA-FDFAGGRLGYFV---ANPAFIDAVMLVRLPYHLSALS----QAAAIVALRHSAD 279

Query: 404 GDESYESYCAERDGILSSLAR 424
              + E    ER  + + L  
Sbjct: 280 TLGTVEKLSVERVRVAARLEE 300

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} Length = 363

 Score = 53.3 bits (129), Expect = 7e-08
 Identities = 65/347 (18%), Positives = 108/347 (31%), Gaps = 75/347 (21%)

Query: 172 LRDTIAA--GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS 229
           LR  +A    +        +  ++  T G    + ++ ++L+       +   P +  Y 
Sbjct: 72  LRKEVADFYQL--------EEEELIFTAGVDELIELLTRVLLD-TTTNTVMATPTFVQYR 122

Query: 230 ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVR-ALVVI-NPGNPTGQVL 287
            +  + G  +    L +     LE               I  +  +V I NP NPTG  +
Sbjct: 123 QNALIEGAEVREIPLLQDGEHDLE----------GMLNAIDEKTTIVWICNPNNPTGNYI 172

Query: 288 AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQS 347
              + +A +D    + LV+L DE Y E  YV  +     K V       +  I   +F  
Sbjct: 173 ELADIQAFLDRVPSDVLVVL-DEAYIE--YVTPQPEKHEKLVRT----YKNLIITRTF-- 223

Query: 348 VSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA---SVNLCSNISGQILASLVMSPPKVG 404
            SK  YG    R GY        E+  Q+  V    +           + ++        
Sbjct: 224 -SKI-YGLASARVGYGI---ADKEIIRQLNIVRPPFNTTSIGQKLA--IEAI-------K 269

Query: 405 DESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAA 464
           D+++   C          A   K  E      E +    A G   L     L  +A    
Sbjct: 270 DQAFIGECRTS------NANGIKQYEAFAKRFEKVKLYPANGNFVLID---LGIEAGTIF 320

Query: 465 EAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTI-LPQE 510
                         L    G +   G+  G  P     R TI   ++
Sbjct: 321 SY------------LEKN-GYITRSGAALG-FPT--AVRITIGKEED 351

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 1e-07
 Identities = 78/587 (13%), Positives = 149/587 (25%), Gaps = 209/587 (35%)

Query: 12  FLNRSHQQN---LLSSSSSHCQSRFLSSTSVIDSPSSSSMAPTSSPAITVDSL---NPKV 65
           F+    + N   L+S   +  +   + +   I+                 D L   N   
Sbjct: 82  FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE---------------QRDRLYNDNQVF 126

Query: 66  LKCEYAV-RGEIVSIAQRLQQELQTNPG-------------------------SHSFDEI 99
            K  Y V R +     ++   EL+                                  +I
Sbjct: 127 AK--YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184

Query: 100 LYCNIGN---PQSLGQQPITFFREV----LALCDHPSILD------RSETQGLFSADSIE 146
            + N+ N   P+++ +       ++     +  DH S +       ++E + L  +   E
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244

Query: 147 RAWQILDQI--PG--RA----------TGAYSHSQGIKGLRDTIAAGIEARDGF-PADPN 191
               +L  +       A          T     +  +     T  +         P +  
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304

Query: 192 DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWG 251
            + L       +    Q L   E           P   + I       +   L     W 
Sbjct: 305 SLLLK-----YLDCRPQDL-PREVLTTN------PRRLSII----AESIRDGLATWDNW- 347

Query: 252 LETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEV 311
                  K +   K   I   +L V+ P          E ++                 V
Sbjct: 348 -------KHVNCDKLTTIIESSLNVLEP---------AEYRKMFDRL-----------SV 380

Query: 312 YQENVYVPEK-------------------KFHSF---KKVSRSMGYGEKDI--------- 340
           +  + ++P                     K H +   +K  +        I         
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440

Query: 341 -------SLVSFQSVSKGYYGE-CGKRG---------GY----MEVTGFSAEVREQIY-- 377
                  S+V   ++ K +  +               G+    +E        R  ++  
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR-MVFLD 499

Query: 378 ------KVASVNLCSNISGQILASLVMSPPKVGD-ESYESYCAERDGILSSLARRAKTLE 430
                 K+   +   N SG IL +L          + Y+ Y  + D       R    + 
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTL-------QQLKFYKPYICDNDPKYE---RLVNAIL 549

Query: 431 DAFNSLEGITCNKAEGAMYLFPR---IQL----PEKAIKAAEAEKTV 470
           D F  L      K E  +        +++     ++AI   EA K V
Sbjct: 550 D-F--LP-----KIEENLICSKYTDLLRIALMAEDEAI-FEEAHKQV 587

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} Length = 337

 Score = 49.4 bits (119), Expect = 1e-06
 Identities = 27/150 (18%), Positives = 51/150 (34%), Gaps = 27/150 (18%)

Query: 172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS-ENDGILCPIPQYPLYSA 230
           +   +A         P   +++ L  G           +     +   +   P +  Y A
Sbjct: 56  VMRKLAE----HFSCP--EDNLMLVRG-IDEC---FDRISAEFSSMRFVTAWPGFDGYRA 105

Query: 231 SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE 290
            IA+ G       L +     L+        + ++   +     V+ NP NPTGQ L+  
Sbjct: 106 RIAVSGLRHFEIGLTD--DLLLD---PNDLAQVSRDDCV-----VLANPSNPTGQALSAG 155

Query: 291 NQRAIVDFCKKEGLVLLADEVYQENVYVPE 320
               +    ++ G +L+ DE Y +  Y   
Sbjct: 156 ---ELDQLRQRAGKLLI-DETYVD--YSSF 179

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} Length = 418

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 49/258 (18%), Positives = 93/258 (36%), Gaps = 34/258 (13%)

Query: 196 TDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPY-YLDEATGW-GLE 253
           T G +  +H ++        D +L     +  Y    +  G TLV Y   DE   +    
Sbjct: 108 TAGGTGGIHHLIHNYTEP-GDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEHNNFNHEA 166

Query: 254 TSEVKKQLEAAKAKGITVRALVVINPG--NPTGQVLAEENQRAIVDFCKKE------GLV 305
                 +L A +        +V+ N    NPTG  + +++  +I++F K         ++
Sbjct: 167 FQNRVNELAAKQT-----NVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVI 221

Query: 306 LLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSK--GYYGECGKRGGYM 363
           +  D  Y +     ++     +       +  K+I      S+SK    YG+   R G M
Sbjct: 222 IGIDVAYLDYSGEKDEV----RAFFNKFSHLPKEILTCVCYSLSKGFTMYGQ---RVGAM 274

Query: 364 EVTGFSAEVREQIY---KVASVNLCSNIS--GQILASLVMSPPKVGDESYESYCAERDGI 418
                  E+ ++ +   K  S    SNI        + +++ P      ++ Y AER+  
Sbjct: 275 IGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADP----AKFKEYEAERNCY 330

Query: 419 LSSLARRAKTLEDAFNSL 436
              +  RA   +     +
Sbjct: 331 YQLIRDRADIFKQEAAQV 348

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* Length = 335

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 31/143 (21%), Positives = 46/143 (32%), Gaps = 25/143 (17%)

Query: 172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS 231
           L + I       D      N++ + +GA   +++MM +      D  +   P Y  Y   
Sbjct: 61  LIEKIL---SYLDTDFLSKNNVSVGNGADEIIYVMMLMF-----DRSVFFPPTYSCYRIF 112

Query: 232 IALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEEN 291
               G   +   L +              L   +        + + NP NPTG V   E 
Sbjct: 113 AKAVGAKFLEVPLTK-------------DLRIPEVNVGEGDVVFIPNPNNPTGHVFERE- 158

Query: 292 QRAIVDFCKKEGLVLLADEVYQE 314
              I    K    V L DE Y E
Sbjct: 159 --EIERILKTGAFVAL-DEAYYE 178

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} Length = 365

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 40/283 (14%), Positives = 85/283 (30%), Gaps = 54/283 (19%)

Query: 172 LRDTIAA--GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS 229
           L+ T+A    +           +I +  G+   +   +   +    +  L     + +Y 
Sbjct: 70  LKSTLAQKYKV--------QNENIIIGAGSDQVIEFAIHSKLN-SKNAFLQAGVTFAMYE 120

Query: 230 ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVR-ALVVI-NPGNPTGQVL 287
                 G                +             +       L+ +  P NP G+ L
Sbjct: 121 IYAKQCGAKCYKTQSITHNLDEFK----------KLYETHKDEIKLIFLCLPNNPLGECL 170

Query: 288 AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQS 347
                   +    ++ LV++ D  Y E  +   K     KK        ++  +++   +
Sbjct: 171 DASEATEFIKGVNEDCLVVI-DAAYNE--FASFK---DSKKHLEPCELIKEFDNVLYLGT 224

Query: 348 VSKGYYGECGKRGGYMEVTGF-SAEVREQIYKVA---SVNLCSNISGQILASLVMSPPKV 403
            SK  YG  G R GY    G  +A +    YK+    +V+  +  +   +A++       
Sbjct: 225 FSK-LYGLGGLRIGY----GIANANIISAFYKLRAPFNVSNLALKAA--VAAM------- 270

Query: 404 GDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEG 446
            D+ +     E     S +       ++       I    +  
Sbjct: 271 DDDEFTEKTLEN--NFSQMEL----YKEFAKKH-NIKIIDSYT 306

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} Length = 354

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 29/159 (18%), Positives = 58/159 (36%), Gaps = 26/159 (16%)

Query: 172 LRDTIAA--GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS 229
           L + +AA   +        +   I LT G+S  +   ++         ++ P   Y    
Sbjct: 56  LGNKLAAHHQV--------EAPSILLTAGSSEGIRAAIEAYAS-LEAQLVIPELTYGDGE 106

Query: 230 ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLA 288
               + G  +    + +   W  +   ++    A  A   +  ++V + NP NPTG +  
Sbjct: 107 HFAKIAGMKVTKVKMLD--NWAFD---IEGLKAAVAAY--SGPSIVYLVNPNNPTGTITP 159

Query: 289 EENQRAIVDFCKK--EGLVLLADEVYQENVYVPEKKFHS 325
            +    I  +        + + DE Y E  +V + +F S
Sbjct: 160 AD---VIEPWIASKPANTMFIVDEAYAE--FVNDPRFRS 193

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 Length = 412

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 40/211 (18%), Positives = 64/211 (30%), Gaps = 54/211 (25%)

Query: 196 TDGASPAVHMMMQLLIRSENDG-ILCPIPQYPLYSASIALHGGTLVPY-YLDEATGWGLE 253
           +   + A+H+  +   +   D  +    P +  + A     G     Y Y    T   L+
Sbjct: 104 SLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETK-SLD 162

Query: 254 TSEVKKQLEAAKAKGITVRALVVINPG--NPTGQVLAEENQRAIVDFCKKEGLVLLADEV 311
            +     ++ A    I      V++    NPTG     E    IVD    +  + L D  
Sbjct: 163 LNGFLNAIQKAPEGSI-----FVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTA 217

Query: 312 YQENVYVPEKKFHSFKKVSRSMGYG----EKD--------------ISLVSFQSVSK--G 351
           YQ                    G+     +KD                +   QS +K  G
Sbjct: 218 YQ--------------------GFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAG 257

Query: 352 YYGECGKR-GGYMEVTGFSAEVREQIYKVAS 381
            YGE   R G +       A+ +     V S
Sbjct: 258 MYGE---RVGCFHLALTKQAQNKTIKPAVTS 285

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* Length = 456

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 32/181 (17%), Positives = 63/181 (34%), Gaps = 18/181 (9%)

Query: 158 RATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDG 217
               AY+ S+    L  T+      +         +    G   A +++ QL I+     
Sbjct: 66  MGDEAYAGSENFYHLERTVQELFGFKHI-------VPTHQGRG-AENLLSQLAIKPGQY- 116

Query: 218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEV----KKQLEAA--KAKGITV 271
           +   +  +         +G   V    DEA   GL  +       K+L+    +     +
Sbjct: 117 VAGNMY-FTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENI 175

Query: 272 RALVVINPGNPT-GQVLAEENQRAIVDFCKKEGLVLLADEV-YQENVYVPEKKFHSFKKV 329
             + +    N   GQ ++  N RA+ +  +  G+ +  D     EN Y  +++   F+  
Sbjct: 176 AYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENK 235

Query: 330 S 330
           S
Sbjct: 236 S 236

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} Length = 405

 Score = 42.6 bits (101), Expect = 3e-04
 Identities = 18/115 (15%), Positives = 37/115 (32%), Gaps = 9/115 (7%)

Query: 202 AVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPY-YLDEATGWGLETSEVKKQ 260
           A+ ++++ L     + +    P Y  +   I   G  L    + D      +        
Sbjct: 109 AIFVLLEFLKMLNVETLYVTNPPYINHVNMIESRGFNLKYINFFDYNLI-DINYDLFLND 167

Query: 261 LEAAKAKGITVRALVVINPG--NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQ 313
           L             V++     NP    + E+    I++    +  V++ D  YQ
Sbjct: 168 LRNIPNGSS-----VILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQ 217

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} Length = 360

 Score = 42.1 bits (100), Expect = 3e-04
 Identities = 25/151 (16%), Positives = 48/151 (31%), Gaps = 28/151 (18%)

Query: 172 LRDTIAA--GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS 229
           LR+      G         DP+ I + +G+   ++ +++       + I    P Y  Y 
Sbjct: 70  LREVAGELYGF--------DPSWIIMANGSDEVLNNLIRAFAAEG-EEIGYVHPSYSYYG 120

Query: 230 ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAE 289
               + G  +  + L            +    E  + K        +  P  P G     
Sbjct: 121 TLAEVQGARVRTFGLTGD-------FRIAGFPERYEGKVF-----FLTTPNAPLGPSFPL 168

Query: 290 ENQRAIVDFCKKEGLVLLADEVYQENVYVPE 320
           E    I +  ++   +L+ DE Y E  +   
Sbjct: 169 E---YIDELARRCAGMLVLDETYAE--FAES 194

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Length = 371

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 23/163 (14%), Positives = 57/163 (34%), Gaps = 25/163 (15%)

Query: 152 LDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI 211
           LD+I  +    +        + + +   +          +   +T+GA  A   +M  L 
Sbjct: 47  LDEI--KTPPIH------DFIHNQLPKFLGC--------DVARVTNGAREAKFAVMHSLA 90

Query: 212 RSENDGILCPIPQYPLYSASIA--LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGI 269
           + ++  ++  + +   YS+ +A    G  +      +   + +      + +E    K  
Sbjct: 91  K-KDAWVV--MDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEE-TKKRG 146

Query: 270 TVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVY 312
            V   ++  P    G +    + + I   C +  + LL +  Y
Sbjct: 147 EVVLALITYPDGNYGNLP---DVKKIAKVCSEYDVPLLVNGAY 186

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	533
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	100.0
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	100.0
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	100.0
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	100.0
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	100.0
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	100.0
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	100.0
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	100.0
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	100.0
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	100.0
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	100.0
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	100.0
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	100.0
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	100.0
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	100.0
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	100.0
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	100.0
3ele_A	398	Amino transferase; RER070207001803, structural gen	100.0
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	100.0
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	100.0
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	100.0
3nra_A	407	Aspartate aminotransferase; structural genomics, j	100.0
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	100.0
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	100.0
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	100.0
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	100.0
3rq1_A	418	Aminotransferase class I and II; structural genomi	100.0
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	100.0
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	100.0
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	100.0
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	100.0
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	100.0
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	100.0
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	100.0
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	100.0
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	100.0
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	100.0
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	100.0
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	100.0
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	100.0
1vp4_A	425	Aminotransferase, putative; structural genomics, j	100.0
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	100.0
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	100.0
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	100.0
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	100.0
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	100.0
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	100.0
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	100.0
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	100.0
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	100.0
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	100.0
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	100.0
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	100.0
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	100.0
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	100.0
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	100.0
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	100.0
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	100.0
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	100.0
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	100.0
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	100.0
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	100.0
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	100.0
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	100.0
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	100.0
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	100.0
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	100.0
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	100.0
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	100.0
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	100.0
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	100.0
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	100.0
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	100.0
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	100.0
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	100.0
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	100.0
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	100.0
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	100.0
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	100.0
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	100.0
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	100.0
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	100.0
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	100.0
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	100.0
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	100.0
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	100.0
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	100.0
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	100.0
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	100.0
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	100.0
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	100.0
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	100.0
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	100.0
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	100.0
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	100.0
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	100.0
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	100.0
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	100.0
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	100.0
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	100.0
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	100.0
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	100.0
1svv_A	359	Threonine aldolase; structural genomics, structura	100.0
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	100.0
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	100.0
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	100.0
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	100.0
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	100.0
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	100.0
1iug_A	352	Putative aspartate aminotransferase; wild type, py	99.98
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.98
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	99.98
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	99.98
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	99.98
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	99.98
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	99.98
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	99.98
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	99.98
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	99.98
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	99.98
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	99.98
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	99.98
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	99.98
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	99.98
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	99.98
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	99.97
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.97
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	99.97
3hmu_A	472	Aminotransferase, class III; structural genomics,	99.97
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	99.97
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	99.97
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	99.97
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	99.97
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	99.97
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	99.97
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	99.97
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	99.97
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	99.97
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	99.97
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	99.97
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	99.97
1z7d_A	433	Ornithine aminotransferase; structural genomics co	99.97
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.97
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	99.97
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.97
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	99.97
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	99.97
3pj0_A	359	LMO0305 protein; structural genomics, joint center	99.97
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.97
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	99.97
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	99.97
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	99.97
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	99.97
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	99.97
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	99.97
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	99.97
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	99.96
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	99.96
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.96
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	99.96
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.96
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	99.96
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	99.96
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	99.96
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.96
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	99.96
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	99.96
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.96
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	99.96
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	99.96
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	99.96
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.96
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	99.96
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	99.92
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	99.96
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	99.95
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	99.95
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	99.95
2fnu_A	375	Aminotransferase; protein-product complex, structu	99.95
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	99.95
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	99.95
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	99.95
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	99.95
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	99.95
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	99.95
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.95
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	99.95
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	99.95
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	99.95
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	99.95
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	99.94
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	99.94
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	99.94
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	99.94
1o69_A	394	Aminotransferase; structural genomics, unknown fun	99.94
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	99.94
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	99.94
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.94
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	99.94
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	99.94
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	99.94
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	99.93
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	99.93
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	99.93
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	99.93
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	99.93
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	99.93
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	99.92
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	99.92
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	99.92
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	99.92
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	99.92
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	99.91
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.91
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	99.91
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	99.91
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	99.91
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	99.91
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	99.91
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	99.91
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	99.91
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	99.9
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	99.88
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	99.87
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	99.87
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	99.87
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	99.86
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	99.85
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.78
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	99.76
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	99.73
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	99.73
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	99.72
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.62
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	99.54
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	99.53
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	84.85
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	82.04

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=100.00  E-value=6.9e-64  Score=531.34  Aligned_cols=480  Identities=79%  Similarity=1.278  Sum_probs=427.6

Q ss_pred             CcccccCcCcccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCc
Q 009517           54 PAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDR  133 (533)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~  133 (533)
                      +.+++..+|+++.+..|...+++..++++++++...++..+|+..+|++++|+|...+++|.+++++++..+.+|.+++.
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~iG~~~~~~~~p~~~~~~~~~~~~~p~~i~~  100 (500)
T 3tcm_A           21 ATVAVDNLNPKVLKCEYAVRGEIVIHAQRLQEQLKTQPGSLPFDEILYCNIGNPQSLGQQPVTFFREVLALCDHPDLLQR  100 (500)
T ss_dssp             CCCCGGGSCHHHHHCCCGGGSHHHHHHHHHHHHHHHSTTSSSSSSCEECSSCCGGGTTCCCCHHHHHHHHHHHSGGGGGC
T ss_pred             ccCCHHHhCHHHHhhhhHhcCHHHHHHHHHHHHHhhCCCCCCHHHhhhhcCcChhhcCCCCCcHHHHHHHhhcCcccccC
Confidence            45677889999999999999999999999999876677677999999999999999999999999999999999999888


Q ss_pred             ccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC
Q 009517          134 SETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS  213 (533)
Q Consensus       134 ~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~  213 (533)
                      +.++..+|.++++++.+.+....+.....|++..|..+||+++++++.+++|.++++++|++|+|+++++..+++.++.+
T Consensus       101 ~~~~~~~p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~  180 (500)
T 3tcm_A          101 EEIKTLFSADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRN  180 (500)
T ss_dssp             TTHHHHSCHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCS
T ss_pred             CCCcccCCHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCC
Confidence            77666789999999988887754323678999999999999999999999998899999999999999999999998635


Q ss_pred             CCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHH
Q 009517          214 ENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQR  293 (533)
Q Consensus       214 ~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~  293 (533)
                      +||+|+++.|+|+.|...+...|++++.++++++++|++|+++|+++|++....+.++++|++++||||||.++|.++|+
T Consensus       181 ~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~  260 (500)
T 3tcm_A          181 EKDGILVPIPQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQY  260 (500)
T ss_dssp             TTEEEEEEESCCTHHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHH
T ss_pred             CCCEEEEeCCCcHhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHH
Confidence            89999999999999999999999999999999888999999999999998766666899999999999999999999999


Q ss_pred             HHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHH
Q 009517          294 AIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVR  373 (533)
Q Consensus       294 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~  373 (533)
                      +|+++|++||+++|+||+|+++.|+++.++.++..+..+++....++++|+++||||+|+|++|+|+||+++.+.+++++
T Consensus       261 ~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~  340 (500)
T 3tcm_A          261 DIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVR  340 (500)
T ss_dssp             HHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHH
T ss_pred             HHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHH
Confidence            99999999999999999999999976556778877766653212345689999999998678999999999755588899


Q ss_pred             HHHHHhhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecc
Q 009517          374 EQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPR  453 (533)
Q Consensus       374 ~~l~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~  453 (533)
                      +.+.+..+..++++.++|.++..+|+.++.++..|+.|.++++.++++++++++.+.+.|+++||+.+..|+|+||+|++
T Consensus       341 ~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~g~~~~~~~  420 (500)
T 3tcm_A          341 EQIYKIASVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCNEAEGAMYVFPQ  420 (500)
T ss_dssp             HHHHHHHHTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBTTEECCE
T ss_pred             HHHHHHHhcccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEecCCeEEEEeee
Confidence            99988777778999999999999999876667888889999999999999999999999999999999999999999998


Q ss_pred             cCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHHHHHHHhcC
Q 009517          454 IQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDKFRN  533 (533)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~~~~~~~  533 (533)
                      +.+|.+..+..+..+..++..++.++|+++||+++||+.|+...+.++|||+++.++++|++++++|++++++++++|+|
T Consensus       421 ~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~i~~l~~~~~~~~~~~~~  500 (500)
T 3tcm_A          421 ICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAVISRFTVFHEAFMSEYRD  500 (500)
T ss_dssp             ECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESCSCTTTHHHHHHHHHHHHHHHHHHHCC
T ss_pred             ecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            88887765555555666677777888999999999999998656777999999988999999999999999999999986

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=100.00  E-value=7.3e-63  Score=522.69  Aligned_cols=472  Identities=48%  Similarity=0.862  Sum_probs=398.5

Q ss_pred             CcccccCcCcccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCc
Q 009517           54 PAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDR  133 (533)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~  133 (533)
                      +.+++..+|+++.++.|..++++..+|.+++++++.|.. .||+.+|++++|+|...|++|.+|+++++.++.+|.+++ 
T Consensus        21 ~~~~~~~~~~~~~~~~y~~rg~~~~~a~~~~~~~~~g~~-~~f~~~i~~nig~p~~~~~~~~~~~r~~l~l~~~p~~~~-   98 (498)
T 3ihj_A           21 QSMTLESMNPQVKAVEYAVRGPIVLKAGEIELELQRGIK-KPFTEVIRANIGDAQAMGQQPITFLRQVMALCTYPNLLD-   98 (498)
T ss_dssp             EEEEEEEETTEEEEEEEEECCHHHHHHHHHHHHHHTTCC-CSSSSCBCCC----------CCHHHHHHHHHHHCGGGGG-
T ss_pred             ccCCHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHhccCC-CchhhhhhcCCcCcccccCCcchHHHHHHHHhcCccccC-
Confidence            456778899999999999999999999999999988776 499999999999999999999999999999999998876 


Q ss_pred             ccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhc-CCCCCCCCEEEcCChHHHHHHHHHHhcc
Q 009517          134 SETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARD-GFPADPNDIFLTDGASPAVHMMMQLLIR  212 (533)
Q Consensus       134 ~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~-g~~~~~~~i~~t~G~~~al~~~~~~l~~  212 (533)
                         +..+|.++++++.+.+.+..+.....|++..|..+||+++++++.+++ |+++++++|++|+|+++++..++++++ 
T Consensus        99 ---~~~~P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~-  174 (498)
T 3ihj_A           99 ---SPSFPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILV-  174 (498)
T ss_dssp             ---CSSSCHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHC-
T ss_pred             ---cccCCHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHc-
Confidence               445799999999888876432235789999999999999999999888 488899999999999999999999998 


Q ss_pred             CCCC----eEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCC
Q 009517          213 SEND----GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLA  288 (533)
Q Consensus       213 ~~gd----~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s  288 (533)
                      ++||    +|+++.|+|+.|...+...|++++.++++++++|++|+++|++++++... +.++++|++++||||||.++|
T Consensus       175 ~~gd~~~d~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~-~~~~k~i~l~np~NPTG~v~s  253 (498)
T 3ihj_A          175 SGGGKSRTGVMIPIPQYPLYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKD-HCDPKVLCIINPGNPTGQVQS  253 (498)
T ss_dssp             CCCGGGSEEEEEEESCCTHHHHHHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTT-TSEEEEEEEESSCTTTCCCCC
T ss_pred             CCCCCCCCEEEEeCCCchhHHHHHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhc-cCCCeEEEEECCCCCCCCcCC
Confidence            7765    99999999999999999999999999999888999999999999987422 125899999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCC-CCCceEEEEecCCccCCCCCCCeeEEEEEec
Q 009517          289 EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG-EKDISLVSFQSVSKGYYGECGKRGGYMEVTG  367 (533)
Q Consensus       289 ~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~  367 (533)
                      .+++++|+++|++||++||+||+|..+.|++..++.++..+..++... ..++++|+++||||+|+|++|+|+||+++.+
T Consensus       254 ~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~  333 (498)
T 3ihj_A          254 RKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVIN  333 (498)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEES
T ss_pred             HHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEec
Confidence            999999999999999999999999999997654677877765544210 0245689999999998678999999998444


Q ss_pred             CCHHHHHHHHHhhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCce
Q 009517          368 FSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGA  447 (533)
Q Consensus       368 ~~~~~~~~l~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg  447 (533)
                      .++++++.+.+.....++++.++|.++..+++.++.++..|+.|.++.+.++++++++++++.+.|+++||+.+.+|+|+
T Consensus       334 ~~~~l~~~l~~~~~~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~p~gg  413 (498)
T 3ihj_A          334 LHPEIKGQLVKLLSVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGA  413 (498)
T ss_dssp             CCHHHHHHHHHHHHHSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBS
T ss_pred             CCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEecCCCeE
Confidence            48999999988877778899999999999999877777889999888899999999999999999999999999999999


Q ss_pred             eEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHHHH
Q 009517          448 MYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~  527 (533)
                      ||+|+++.+|..........+.+.++.++.++|+++||++.||+.|+...+.++|||+++.++++|++++++|+++++++
T Consensus       414 ~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~~~~e~l~~~i~~L~~~~~~~  493 (498)
T 3ihj_A          414 MYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPVEKLKTVLQKVKDFHINF  493 (498)
T ss_dssp             SEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence            99999988887765555556666666667888999999999999998656677999999988999999999999999999


Q ss_pred             HHHhc
Q 009517          528 MDKFR  532 (533)
Q Consensus       528 ~~~~~  532 (533)
                      +++|+
T Consensus       494 ~~~~~  498 (498)
T 3ihj_A          494 LEKYA  498 (498)
T ss_dssp             HHHC-
T ss_pred             HHHhC
Confidence            99885

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=100.00  E-value=3.2e-51  Score=420.55  Aligned_cols=379  Identities=22%  Similarity=0.340  Sum_probs=316.5

Q ss_pred             cCcccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCC
Q 009517           61 LNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLF  140 (533)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~  140 (533)
                      +++++...+++++..+..++.+....+++         +|+|+.|.|+.                      +.       
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~i~l~~~~~~~----------------------~~-------   45 (385)
T 1b5p_A            4 LSRRVQAMKPSATVAVNAKALELRRQGVD---------LVALTAGEPDF----------------------DT-------   45 (385)
T ss_dssp             CCHHHHHCCCCHHHHHHHHHHHHHHTTCC---------CEECCCSSCSS----------------------CC-------
T ss_pred             hhhHHhhcCcchHHHHHHHHHHHHhcCCC---------EEEecCCCCCC----------------------CC-------
Confidence            46677778888887788888777665555         99999999874                      22       


Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      |+.+.+++.+.+..    ....|++..|..+||++++++++..+|.++++++|++|+|+++++..+++.++ ++||+|++
T Consensus        46 ~~~v~~a~~~~~~~----~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~~~~l~-~~gd~Vlv  120 (385)
T 1b5p_A           46 PEHVKEAARRALAQ----GKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAIL-DPGDEVIV  120 (385)
T ss_dssp             CHHHHHHHHHHHHT----TCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEE
T ss_pred             CHHHHHHHHHHHhc----CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHHHHHhc-CCCCEEEE
Confidence            67888888888765    24579998899999999999999988988889999999999999999999998 89999999


Q ss_pred             cCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHH
Q 009517          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (533)
Q Consensus       221 ~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~  300 (533)
                      ++|+|+.|...++..|++++.++++++++|.+|+++|++++++      ++++|++++||||||.++|.+++++|+++|+
T Consensus       121 ~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~  194 (385)
T 1b5p_A          121 LSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITP------RTKALVVNSPNNPTGAVYPKEVLEALARLAV  194 (385)
T ss_dssp             EESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred             cCCCchhHHHHHHHcCCEEEEeecCcccCCCCCHHHHHHhcCC------CCEEEEEeCCCCCCCCCcCHHHHHHHHHHHH
Confidence            9999999999999999999999998656789999999998875      7999999999999999999999999999999


Q ss_pred             HcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhh
Q 009517          301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA  380 (533)
Q Consensus       301 ~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~  380 (533)
                      +||++||+||+|.++.+++  +..++..+       .+ .++|++.||||.+ |++|+|+||+++   ++++++.+.+..
T Consensus       195 ~~~~~li~De~~~~~~~~~--~~~~~~~~-------~~-~~~i~~~s~SK~~-~~~G~RiG~~~~---~~~~~~~l~~~~  260 (385)
T 1b5p_A          195 EHDFYLVSDEIYEHLLYEG--EHFSPGRV-------AP-EHTLTVNGAAKAF-AMTGWRIGYACG---PKEVIKAMASVS  260 (385)
T ss_dssp             HTTCEEEEECTTTTCBSSS--CCCCGGGT-------CT-TTEEEEEESTTTT-TCGGGCCEEEEC---CHHHHHHHHHHH
T ss_pred             HcCCEEEEEccchhcccCC--CCCCHHHc-------CC-CCEEEEEechhhc-CCcccceEEEEe---CHHHHHHHHHHH
Confidence            9999999999999988865  33444333       23 4689999999999 899999999998   899999988776


Q ss_pred             h-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHH
Q 009517          381 S-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEK  459 (533)
Q Consensus       381 ~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~  459 (533)
                      . .+++++.++|.++..+|+..       +...+++++++++++++++.+.+.|+++ |+.+..|++++|+|++++..  
T Consensus       261 ~~~~~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~--  330 (385)
T 1b5p_A          261 RQSTTSPDTIAQWATLEALTNQ-------EASRAFVEMAREAYRRRRDLLLEGLTAL-GLKAVRPSGAFYVLMDTSPI--  330 (385)
T ss_dssp             HTTTCSCCHHHHHHHHHHHHCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCSBTTEEEEECTTT--
T ss_pred             hhccCCCCHHHHHHHHHHHhCC-------CcchHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCeeEEEEEecCCC--
Confidence            5 56788999999988887420       0012456778899999999999999998 99999999999999766410  


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHH
Q 009517          460 AIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~  525 (533)
                              +. +...++..++ ++||.+.||..|+. .  ++||||++.++++|++++++|+++++
T Consensus       331 --------~~-~~~~l~~~l~-~~gv~v~~g~~f~~-~--~~iRis~~~~~~~i~~~l~~l~~~l~  383 (385)
T 1b5p_A          331 --------AP-DEVRAAERLL-EAGVAVVPGTDFAA-F--GHVRLSYATSEENLRKALERFARVLG  383 (385)
T ss_dssp             --------CS-SHHHHHHHHH-HTTEECEESGGGTC-T--TEEEEECCSCHHHHHHHHHHGGGGC-
T ss_pred             --------CC-CHHHHHHHHH-HCCeEEecccccCC-C--CeEEEEecCCHHHHHHHHHHHHHHHh
Confidence                    11 2445555555 78999999999974 3  49999999888899999999987764

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=100.00  E-value=3.9e-51  Score=420.71  Aligned_cols=388  Identities=18%  Similarity=0.179  Sum_probs=297.6

Q ss_pred             CcccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCC
Q 009517           62 NPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFS  141 (533)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p  141 (533)
                      .+++.+++.+|.++|++++++++++..+         +|||++|.+...+++|+                        +.
T Consensus        18 ~~~~~~v~~~p~d~i~~l~~~~~~d~~~---------kinLgvG~y~d~~g~~~------------------------vl   64 (420)
T 4h51_A           18 AERWQKIQAQAPDVIFDLAKRAAAAKGP---------KANLVIGAYRDEQGRPY------------------------PL   64 (420)
T ss_dssp             HHHHHTCCCCCCCHHHHHHHHHHHCCSS---------CEECCSCCCBCTTSCBC------------------------CC
T ss_pred             hHHHhCCCCCCCChHHHHHHHHhcCCCC---------CEEeecCcccCCCCCCC------------------------CC
Confidence            4578889999999999999998875443         89999999887555553                        02


Q ss_pred             HHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCE--EEcCChHHHHHHHHHHhcc---CCCC
Q 009517          142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDI--FLTDGASPAVHMMMQLLIR---SEND  216 (533)
Q Consensus       142 ~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i--~~t~G~~~al~~~~~~l~~---~~gd  216 (533)
                      +.|.++....+.. .  ..+.|.|..|+++||+++++++.+.   ....+++  +.|.|++.|+..++..+..   +|||
T Consensus        65 ~~Vk~A~~~~~~~-~--~~~~Y~p~~G~p~lr~aia~~~~g~---~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd  138 (420)
T 4h51_A           65 RVVRKAEQLLLDM-N--LDYEYLPISGYQPFIDEAVKIIYGN---TVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETT  138 (420)
T ss_dssp             HHHHHHHHHHHHT-T--CCCCCCCTTCCHHHHHHHHHHHHC------CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTS
T ss_pred             HHHHHHHHHHhcC-C--CCCCCCCcCChHHHHHHHHHHhcCC---CccccccceeeecCchHHHHHHHHHHHHhcCCCCC
Confidence            4444444444443 2  2567999999999999999998532   2333443  5588898888777665531   5899


Q ss_pred             eEEEcCCcCcchHHHHHHhCCe-EEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHH
Q 009517          217 GILCPIPQYPLYSASIALHGGT-LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAI  295 (533)
Q Consensus       217 ~Vlv~~p~~~~~~~~~~~~g~~-~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i  295 (533)
                      +|++++|+|++|..+++.+|++ +..+++.+..++++|++.+.+.++..   .++++++++++||||||.+++.++|++|
T Consensus       139 ~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~---~~~~~vll~~~p~NPtG~~~~~~~~~~i  215 (420)
T 4h51_A          139 PIYLSDPTWPNHYGVVKAAGWKNICTYAYYDPKTVSLNFEGMKKDILAA---PDGSVFILHQCAHNPTGVDPSQEQWNEI  215 (420)
T ss_dssp             CEEEEESCCTHHHHHHHHTTCCCEEEEECEEGGGTEECHHHHHHHHHHS---CSSCEEEEESSSCTTTCCCCCHHHHHHH
T ss_pred             EEEEecCCchhHHHHHHHcCCeEEEeeccccccccCCCHHHHHHHHhcc---CCCcEEEEeCCCCCCCCCCCCHHHHHHH
Confidence            9999999999999999999987 55677776678899999999998764   3467777888999999999999999999


Q ss_pred             HHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHH--
Q 009517          296 VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVR--  373 (533)
Q Consensus       296 ~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~--  373 (533)
                      +++|+++++++|+||+|++|.|++.. ..++ ......   +...++|+++||||+| +|+|||+||+++.+...+..  
T Consensus       216 ~~~~~~~~~~~~~D~~Y~~~~~~~~~-~~~~-~~~~~~---~~~~~~i~~~s~SK~~-~~~G~RvG~~~~~~~~~~~~~~  289 (420)
T 4h51_A          216 ASLMLAKHHQVFFDSAYQGYASGSLD-TDAY-AARLFA---RRGIEVLLAQSFSKNM-GLYSERAGTLSLLLKDKTKRAD  289 (420)
T ss_dssp             HHHHHHHTCEEEEEESCTTTTTSCHH-HHTH-HHHHHH---HTTCCCEEEEECTTTS-CCGGGCEEEEEEECSCHHHHHH
T ss_pred             HHHHHhcCceEeeehhhhhhccCCcc-cchH-HHHhHH---hhCceEEEEecccccc-ccccCceEEEEecccCHHHHHH
Confidence            99999999999999999999886421 1111 111111   1334689999999999 89999999999854444333  


Q ss_pred             --HHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CC-ceEecCCce
Q 009517          374 --EQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL--EG-ITCNKAEGA  447 (533)
Q Consensus       374 --~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~g-~~~~~~~gg  447 (533)
                        .++..... ..++++..+|.++..+|+++    .....|.++++.++++|+++|+.|.+.|+++  ++ |.++.+++|
T Consensus       290 ~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~----~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~~~~~~~i~~q~G  365 (420)
T 4h51_A          290 VKSVMDSLIREEYTCPPAHGARLAHLILSNN----ELRKEWEAELSAMAERIRTMRRTVYDELLRLQTPGSWEHVINQIG  365 (420)
T ss_dssp             HHHHHHHHHHTTTSSCCHHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHCCS
T ss_pred             HHHHHHHhhhcccCcchHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecCCCc
Confidence              33333333 67889999999999999864    3677888999999999999999999999987  22 677889999


Q ss_pred             eEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec-CCcCcHHHHHHHHHHHHHH
Q 009517          448 MYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-PQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~~~~l~~~l~~  526 (533)
                      ||.|++++                .++ + ++|+++||+++||       |    |||++ +++++|++++++|++++++
T Consensus       366 mF~~~gls----------------~e~-v-~~L~e~~Vy~~~~-------g----Ris~Agl~~~ni~~~a~aI~~vvr~  416 (420)
T 4h51_A          366 MFSFLGLS----------------KAQ-C-EYCQNHNIFITVS-------G----RANMAGLTHETALMLAQTINDAVRN  416 (420)
T ss_dssp             SEEECCCC----------------HHH-H-HHHHHTTEECCTT-------C----EEEGGGCCHHHHHHHHHHHHHHHC-
T ss_pred             eEEecCcC----------------HHH-H-HHHHhCCEEEcCC-------C----EEEeccCCHHHHHHHHHHHHHHHHH
Confidence            99997654                222 3 4678899999873       2    99997 8999999999999999998


Q ss_pred             HHHH
Q 009517          527 FMDK  530 (533)
Q Consensus       527 ~~~~  530 (533)
                      +.++
T Consensus       417 i~re  420 (420)
T 4h51_A          417 VNRE  420 (420)
T ss_dssp             ----
T ss_pred             hhcC
Confidence            8764

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=100.00  E-value=1.8e-50  Score=415.78  Aligned_cols=379  Identities=12%  Similarity=0.130  Sum_probs=290.5

Q ss_pred             cCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHH
Q 009517           67 KCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIE  146 (533)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~  146 (533)
                      .++..+..+++.....++....        +++|||++|.|...+.++                        ..++.+.+
T Consensus         7 ~~~~~~~~~i~~~~~~~~~~~~--------~~~I~l~~G~~~d~~~~~------------------------~~~~~v~~   54 (405)
T 3k7y_A            7 SLENIEVDNILKTAREFKEDTC--------EEKINLSIGVCCNDDGDL------------------------HIFDSVLN   54 (405)
T ss_dssp             GCCCCCCCHHHHHHHHHTTSSC--------SSCEECSCSSCBCTTSSB------------------------CCCHHHHH
T ss_pred             cCCCCCCChHHHHHHHHhcCCC--------cCcEEeeeeeeECCCCCC------------------------cccHHHHH
Confidence            3444444456666666654221        249999999864311111                        11455555


Q ss_pred             HHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCC--EEEcCChHHHHHHHHHHhccC--CCCeEEEcC
Q 009517          147 RAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPND--IFLTDGASPAVHMMMQLLIRS--ENDGILCPI  222 (533)
Q Consensus       147 ~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~--i~~t~G~~~al~~~~~~l~~~--~gd~Vlv~~  222 (533)
                      ++. .+.+..  ..++|++..|.++||+++++++.++++..+++++  |++|+|+++|+.++++.+. .  + |+|++++
T Consensus        55 a~~-~~~~~~--~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~-~~~~-d~Vlv~~  129 (405)
T 3k7y_A           55 ADK-LVTENY--KEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLK-MLNV-ETLYVTN  129 (405)
T ss_dssp             HHH-HHHHHC--CCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHH-TTTC-CEEEEES
T ss_pred             HHH-HhcCCC--CCCCCCCCCCcHHHHHHHHHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHH-hcCC-CEEEEeC
Confidence            554 331211  3678999999999999999999877776677775  5999999999999999987 6  8 9999999


Q ss_pred             CcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCC-CCCCccCCCHHHHHHHHHHHHH
Q 009517          223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP-GNPTGQVLAEENQRAIVDFCKK  301 (533)
Q Consensus       223 p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p-~NPtG~~~s~~~l~~i~~l~~~  301 (533)
                      |+|++|..+++.+|++++.+|+.++++|++|+++|++++++.    +++++|++++| |||||.+++.+++++|+++|++
T Consensus       130 P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~----~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~  205 (405)
T 3k7y_A          130 PPYINHVNMIESRGFNLKYINFFDYNLIDINYDLFLNDLRNI----PNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLH  205 (405)
T ss_dssp             SCCHHHHHHHHTTTCEEEEECCEETTTTEECHHHHHHHHHHS----CSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred             CCCHhHHHHHHHcCCeEEEEeccccccCCcCHHHHHHHHHhC----CCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999855557899999999999862    24678888765 9999999999999999999999


Q ss_pred             cCCEEEEccccccccccCCC-CcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHH---
Q 009517          302 EGLVLLADEVYQENVYVPEK-KFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY---  377 (533)
Q Consensus       302 ~~~~lI~De~y~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~---  377 (533)
                      ||++||+||+|.+|.|++.. ...++..+..      ...++|+++||||+| +|+|||+||+++...++++++.+.   
T Consensus       206 ~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~------~~~~~i~~~S~SK~~-~l~GlRiG~~~~~~~~~~~~~~~~~~l  278 (405)
T 3k7y_A          206 KKHVIIFDIAYQGFGHTNLEEDVLLIRKFEE------KNIAFSVCQSFSKNM-SLYGERAGALHIVCKNQEEKKIVFNNL  278 (405)
T ss_dssp             HCCEEEEEESCTTTSSSSTTGGGHHHHHHHT------TTCCEEEEEECTTTS-CCTTTTEEEEEEECSSHHHHHHHHHHH
T ss_pred             CCeEEEEecCcccccCCCcccchHHHHHHHh------cCCcEEEEeeCCccC-CCccccceEEEEEeCCHHHHHHHHHHH
Confidence            99999999999999885321 1223333221      234689999999999 899999999976445777665543   


Q ss_pred             -Hhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCC---CceEecCCcee
Q 009517          378 -KVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFN----SLE---GITCNKAEGAM  448 (533)
Q Consensus       378 -~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~~---g~~~~~~~gg~  448 (533)
                       .... ..++++.++|.++..+|+++    ...+.|.++++.++++|+++|+.+.+.|+    ++.   +|.+.+|+|||
T Consensus       279 ~~~~~~~~~~~~~~~q~~~~~~l~~~----~l~~~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p~gg~  354 (405)
T 3k7y_A          279 CFIVRKFYSSPVIHTNRILCQLLNNQ----NLKLNWIKELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVYKKQRGL  354 (405)
T ss_dssp             HHHHHTTTSSCCHHHHHHHHHHHHCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGGSSCCSS
T ss_pred             HHHHhcccCCCcHHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCccccCCceE
Confidence             3333 44567889999998888642    13345778889999999999999999999    771   27889999999


Q ss_pred             EEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec-CCcCcHHHHHHHHHHHHHH
Q 009517          449 YLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-PQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~~~~l~~~l~~  526 (533)
                      |+|++++  .               .++.++ +++||++.||       +    |||++ .++++|++++++|+++++.
T Consensus       355 f~~~~l~--~---------------~~~~~L-~~~gV~v~p~-------~----Ris~a~~~~~~i~~~~~~i~~~~~~  404 (405)
T 3k7y_A          355 FSFVPLL--A---------------KIAEHL-KTHHIYIINN-------G----RINVSGITKNNVDYIADKICLSLSQ  404 (405)
T ss_dssp             EEECGGG--G---------------GGTTTT-TTTTEECCTT-------S----EEEGGGCCTTHHHHHHHHHHHHHHC
T ss_pred             EEecCCC--H---------------HHHHHH-HHCCEeecCC-------C----eEEEeccCHHHHHHHHHHHHHHHhh
Confidence            9997654  1               123455 8899999984       2    99997 8999999999999998763

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=100.00  E-value=9.1e-50  Score=415.36  Aligned_cols=367  Identities=22%  Similarity=0.365  Sum_probs=305.6

Q ss_pred             ceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHH
Q 009517           98 EILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA  177 (533)
Q Consensus        98 ~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia  177 (533)
                      ++|+|++|.|+..|..+                         .|+.+++++.+.+...   ....|.+..|..+||++++
T Consensus        55 ~~i~l~~g~~~~~g~~~-------------------------~~~~v~~a~~~~~~~~---~~~~y~~~~g~~~lr~~la  106 (427)
T 3dyd_A           55 TMISLSIGDPTVFGNLP-------------------------TDPEVTQAMKDALDSG---KYNGYAPSIGFLSSREEIA  106 (427)
T ss_dssp             CCEECCCSCTTTTSSSC-------------------------CCHHHHHHHHHHHHHC---CSSSCCCTTCCHHHHHHHH
T ss_pred             CEEeCCCcCCCccCCCC-------------------------CCHHHHHHHHHHHhcC---cCCCCCCCCCcHHHHHHHH
Confidence            38999999987432212                         2788999998888763   2468999999999999999


Q ss_pred             HHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHH
Q 009517          178 AGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEV  257 (533)
Q Consensus       178 ~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l  257 (533)
                      +++.+. +.++++++|++|+|+++|+..+++.++ ++||+|+++.|+|.+|...++..|.+++.++++++.+|++|+++|
T Consensus       107 ~~~~~~-~~~~~~~~v~~t~g~t~al~~~~~~l~-~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l  184 (427)
T 3dyd_A          107 SYYHCP-EAPLEAKDVILTSGCSQAIDLCLAVLA-NPGQNILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDLKQL  184 (427)
T ss_dssp             HHHCBT-TBCCCGGGEEEESSHHHHHHHHHHHHC-CTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHH
T ss_pred             HHHhhc-CCCCChHHEEEecCcHHHHHHHHHHhc-CCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHH
Confidence            999876 777889999999999999999999998 899999999999999999999999999999998777889999999


Q ss_pred             HHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCC
Q 009517          258 KKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE  337 (533)
Q Consensus       258 ~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~  337 (533)
                      ++++++      ++++|++++||||||.+++.++|++|+++|+++|+++|+||+|++|.+++. .+.++..+       .
T Consensus       185 ~~~l~~------~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~-~~~~~~~~-------~  250 (427)
T 3dyd_A          185 EYLIDE------KTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDC-KYEPLATL-------S  250 (427)
T ss_dssp             HSSCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSC-CCCCGGGG-------C
T ss_pred             HHHhcc------CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCC-cCccHHHh-------C
Confidence            999876      799999999999999999999999999999999999999999999998663 34444333       3


Q ss_pred             CCceEEEEecCCccCCCCCCCeeEEEEEecCC----HHHHHHHHHhhhccccCChHHHHHHHHHcCCCCCCChhHHHHHH
Q 009517          338 KDISLVSFQSVSKGYYGECGKRGGYMEVTGFS----AEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCA  413 (533)
Q Consensus       338 ~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~----~~~~~~l~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~  413 (533)
                      .+..+|+++||||+| +++|+|+||+++....    +++++.+......++++++++|.++..+|+...         .+
T Consensus       251 ~~~~vi~~~S~sK~~-~~~G~riG~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~a~~~~L~~~~---------~~  320 (427)
T 3dyd_A          251 TDVPILSCGGLAKRW-LVPGWRLGWILIHDRRDIFGNEIRDGLVKLSQRILGPCTIVQGALKSILCRTP---------GE  320 (427)
T ss_dssp             SSCCEEEEEESTTTS-SCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHSC---------HH
T ss_pred             CCCcEEEEeeccccC-CCcCcceEEEEecCcchhhHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC---------HH
Confidence            455689999999998 7899999999983100    578888877655568899999999999885321         24


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCC
Q 009517          414 ERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGF  493 (533)
Q Consensus       414 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f  493 (533)
                      ++++++++++++++.+.+.|+++||+.++.|++++|+|++++...       ..+..+...++.++++++||++.||..|
T Consensus       321 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~p~~g~~~~~~l~~~~-------~~~~~~~~~~~~~l~~~~gV~v~~g~~~  393 (427)
T 3dyd_A          321 FYHNTLSFLKSNADLCYGALAAIPGLRPVRPSGAMYLMVGIEMEH-------FPEFENDVEFTERLVAEQSVHCLPATCF  393 (427)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSTTEEEECCSBTTEEEEEECGGG-------CTTCSSHHHHHHHHHHHHCEECEEGGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeEEEEEecCHhh-------cCCCCCHHHHHHHHHHHCCEEEECCccc
Confidence            467788889999999999999999999999999999997765110       0001234566777777899999999998


Q ss_pred             CCCCCCceEEEEecCCcCcHHHHHHHHHHHHHHHH
Q 009517          494 GQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFM  528 (533)
Q Consensus       494 ~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~~  528 (533)
                      +. .  +++||+++.++++|++++++|+++++++.
T Consensus       394 ~~-~--~~iRis~~~~~e~i~~~l~~l~~~l~~~~  425 (427)
T 3dyd_A          394 EY-P--NFIRVVITVPEVMMLEACSRIQEFCEQHY  425 (427)
T ss_dssp             TC-T--TEEEEESCSCHHHHHHHHHHHHHHHHHHC
T ss_pred             CC-C--CeEEEEECCCHHHHHHHHHHHHHHHHHhh
Confidence            73 3  39999999899999999999999988754

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=100.00  E-value=3.5e-48  Score=398.11  Aligned_cols=384  Identities=23%  Similarity=0.370  Sum_probs=319.2

Q ss_pred             cCcccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCC
Q 009517           61 LNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLF  140 (533)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~  140 (533)
                      +++++...+++++..+..++++....|++         +|||+.|.|..                      +.       
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---------~i~l~~~~~~~----------------------~~-------   44 (388)
T 1j32_A            3 LAARVESVSPSMTLIIDAKAKAMKAEGID---------VCSFSAGEPDF----------------------NT-------   44 (388)
T ss_dssp             CCHHHHTSCCCSSTTTHHHHHHHHTTTCC---------CEECCCSSCSS----------------------CC-------
T ss_pred             hhhHhHhCCccHHHHHHHHHHHHHhcCCC---------EEECCCCCCCC----------------------CC-------
Confidence            35567778888888888888887765555         99999999864                      21       


Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      |+.+.+++.+.+..    ....|++..|..+||+++++++.+.+|.++++++|++|+|+++++..+++.++ ++||+|++
T Consensus        45 ~~~v~~a~~~~~~~----~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~-~~gd~vl~  119 (388)
T 1j32_A           45 PKHIVEAAKAALEQ----GKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMI-EPGDEVII  119 (388)
T ss_dssp             CHHHHHHHHHHHHT----TCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEE
T ss_pred             CHHHHHHHHHHHhc----CCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhc-CCCCEEEE
Confidence            68888888888865    24579998899999999999999888988889999999999999999999998 89999999


Q ss_pred             cCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHH
Q 009517          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (533)
Q Consensus       221 ~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~  300 (533)
                      ++|+|+++...++..|.+++.++.+++.+|.+|+++|++++++      ++++|++++|+||||.++|.+++++|+++|+
T Consensus       120 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~  193 (388)
T 1j32_A          120 PAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITP------KTKLLVFNTPSNPTGMVYTPDEVRAIAQVAV  193 (388)
T ss_dssp             ESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred             cCCCChhHHHHHHHcCCEEEEecCCcccCCCCCHHHHHHhcCc------CceEEEEeCCCCCCCcCCCHHHHHHHHHHHH
Confidence            9999999999999999999999987655788999999999976      7999999999999999999999999999999


Q ss_pred             HcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhh
Q 009517          301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA  380 (533)
Q Consensus       301 ~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~  380 (533)
                      +||+++|+||+|.++.+++. +..++..+..+.     ...++++.||||.+ |++|+|+||+++   ++++++.+....
T Consensus       194 ~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~s~sK~~-~~~G~r~G~~~~---~~~~~~~l~~~~  263 (388)
T 1j32_A          194 EAGLWVLSDEIYEKILYDDA-QHLSIGAASPEA-----YERSVVCSGFAKTY-AMTGWRVGFLAG---PVPLVKAATKIQ  263 (388)
T ss_dssp             HHTCEEEEECTTTTCBCTTC-CCCCGGGSCHHH-----HHTEEEEEESTTTT-TCTTTCCEEEEC---CHHHHHHHHHHH
T ss_pred             HcCCEEEEEccchhcccCCC-CCCCHHHccccc-----cCCEEEEeechhcc-CCcccceEEEEe---CHHHHHHHHHHH
Confidence            99999999999999988653 333443331111     12468999999999 889999999998   899999888776


Q ss_pred             h-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHH
Q 009517          381 S-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEK  459 (533)
Q Consensus       381 ~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~  459 (533)
                      . .++++++++|.++..+|+...          +++++++++++++++++.+.|++++|+.++.+.+++++|++++..  
T Consensus       264 ~~~~~~~~~~~~~a~~~~l~~~~----------~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~--  331 (388)
T 1j32_A          264 GHSTSNVCTFAQYGAIAAYENSQ----------DCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSIAKT--  331 (388)
T ss_dssp             HTTTCSCCHHHHHHHHHHHHSCS----------HHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCBTTEECCBCGGG--
T ss_pred             hhcccCCCHHHHHHHHHHHhCCc----------HHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCeeEEEEEecCCC--
Confidence            5 567889999998888875322          345678888999999999999998899998999999999765310  


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHHHH
Q 009517          460 AIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~  527 (533)
                              +. +...++..+++++||.+.||..|+. +  ++|||+++.++++|++++++|+++++++
T Consensus       332 --------~~-~~~~~~~~l~~~~gi~v~~g~~~~~-~--~~iRis~~~~~~~i~~~~~~l~~~l~~~  387 (388)
T 1j32_A          332 --------GR-SSLDFCSELLDQHQVATVPGAAFGA-D--DCIRLSYATDLDTIKRGMERLEKFLHGI  387 (388)
T ss_dssp             --------TC-CHHHHHHHHHHHHCEECEEGGGGTC-T--TBEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred             --------CC-CHHHHHHHHHHhCCEEEeChhhhCC-C--CcEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence                    11 2345555666668999999998873 3  3899999988999999999999988764

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=100.00  E-value=2.7e-48  Score=399.43  Aligned_cols=377  Identities=19%  Similarity=0.280  Sum_probs=310.1

Q ss_pred             ccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHH
Q 009517           64 KVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSAD  143 (533)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~  143 (533)
                      ++..++++++..++..++++..++++         +|||+.|.+..                      +.       |+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~g~~---------~i~l~~g~~~~----------------------~~-------~~~   48 (391)
T 3h14_A            7 SRSAVDPFIVMDVMEAARRAEEAGRR---------IIHMEVGQPGT----------------------GA-------PRG   48 (391)
T ss_dssp             STTCCCCCTTHHHHHHHHHHHHTTCC---------CEECCCSSCSS----------------------CS-------CHH
T ss_pred             hHhhcCcchHHHHHHHHHHHHhcCCC---------eEEccCCCCCC----------------------CC-------CHH
Confidence            45667778888889999988887766         99999999874                      22       688


Q ss_pred             HHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCC
Q 009517          144 SIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIP  223 (533)
Q Consensus       144 v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p  223 (533)
                      +++++.+++.+    ....|++..|..+||+++++++++.+|.++++++|++|+|+++|+..+++.++ ++||+|+++.|
T Consensus        49 v~~a~~~~~~~----~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~-~~gd~vl~~~p  123 (391)
T 3h14_A           49 AVEALAKSLET----DALGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTALF-DSGDRVGIGAP  123 (391)
T ss_dssp             HHHHHHHHHC--------------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC-CTTCEEEEEES
T ss_pred             HHHHHHHHHhc----CCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHHHHHHHHhc-CCCCEEEEcCC
Confidence            99998888875    25689999999999999999999999988999999999999999999999998 89999999999


Q ss_pred             cCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcC
Q 009517          224 QYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEG  303 (533)
Q Consensus       224 ~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~  303 (533)
                      +|+++...++..|.+++.++++++++|.+|+++++++         ++++|++++|+||||.+++.+++++|+++|++||
T Consensus       124 ~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~---------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~  194 (391)
T 3h14_A          124 GYPSYRQILRALGLVPVDLPTAPENRLQPVPADFAGL---------DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQG  194 (391)
T ss_dssp             CCHHHHHHHHHTTCEEEEEECCGGGTTSCCHHHHTTS---------CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTT
T ss_pred             CCccHHHHHHHcCCEEEEeecCcccCCCCCHHHHHhc---------CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcC
Confidence            9999999999999999999998777789999998875         4789999999999999999999999999999999


Q ss_pred             CEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-c
Q 009517          304 LVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-V  382 (533)
Q Consensus       304 ~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~  382 (533)
                      +++|+||+|.++.+++.  ..++..+         ..++|++.||||.+ |++|+|+||+++   ++++++.+..... .
T Consensus       195 ~~li~De~~~~~~~~~~--~~~~~~~---------~~~~i~~~s~sK~~-g~~G~r~G~~~~---~~~~~~~~~~~~~~~  259 (391)
T 3h14_A          195 ASFISDEIYHGIEYEAK--AVTALEL---------TDECYVINSFSKYF-SMTGWRVGWMVV---PEDQVRVVERIAQNM  259 (391)
T ss_dssp             CEEEEECTTTTCBSSSC--CCCGGGT---------CSSSEEEEESSSTT-CCTTSCCEEEEC---CGGGHHHHHHHHHHT
T ss_pred             CEEEEECcchhcccCCC--CcChhhc---------CCCEEEEEechhcc-CCccceeEEEEe---CHHHHHHHHHHHhhh
Confidence            99999999999988664  2232221         12468899999999 889999999998   8999999887765 6


Q ss_pred             cccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHH
Q 009517          383 NLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIK  462 (533)
Q Consensus       383 ~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~  462 (533)
                      ++++++++|.++.++|+.           .+++++++++++++++.+.+.|++++...+..+++++++|++++.+.    
T Consensus       260 ~~~~~~~~~~a~~~~l~~-----------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----  324 (391)
T 3h14_A          260 FICAPHASQVAALAALDC-----------DAELQANLDVYKANRKLMLERLPKAGFTRIAPPDGAFYVYADVSDLT----  324 (391)
T ss_dssp             TCCCCHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHHHHHHHHHHHTCCCBCCCCBTTEEEEECTTTC----
T ss_pred             ccCCCHHHHHHHHHHhCC-----------hHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCeeEEEEEecCccC----
Confidence            678899999999888851           24567788889999999999999883344568899999997664211    


Q ss_pred             HHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHHHHHH
Q 009517          463 AAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       463 ~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~~~  529 (533)
                             .+...++..+++++||.+.||..|+...+.++|||+++.++++|++++++|++++++...
T Consensus       325 -------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~~~~~~~  384 (391)
T 3h14_A          325 -------DDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYARATADIEEGLDRLEAFMQARGE  384 (391)
T ss_dssp             -------SCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCSCHHHHHHHHHHHHHHHHHC--
T ss_pred             -------CCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHHhcc
Confidence                   134556667777779999999999853456699999998889999999999999987654

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=100.00  E-value=6.7e-48  Score=403.35  Aligned_cols=388  Identities=19%  Similarity=0.311  Sum_probs=308.4

Q ss_pred             cCcccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCC
Q 009517           61 LNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLF  140 (533)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~  140 (533)
                      ++++....+++++..++..+.     .++         +|+|+.|.|+...                     .      .
T Consensus        54 ~s~~~~~~~~s~~~~~~~~~~-----~~~---------~i~l~~g~p~~~~---------------------~------p   92 (448)
T 3aow_A           54 FSKKALEMRASEVRELLKLVE-----TSD---------IISLAGGLPNPKT---------------------F------P   92 (448)
T ss_dssp             CCHHHHHCCCCHHHHHHHHHH-----TSS---------SEECCCCCCCGGG---------------------S------C
T ss_pred             hhHHHhcCCCcHHHHHHHhcc-----CCC---------cEeCCCCCCCchh---------------------C------C
Confidence            455566666666555444321     223         9999999987310                     0      1


Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      ++.+.+++.+.+.+... ....|++..|..+||+++++++.+.+|.+ ++++|++|+|+++++..++++++ ++||+|++
T Consensus        93 ~~~v~~a~~~~l~~~~~-~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~-~~~~v~~t~G~~~al~~~~~~l~-~~Gd~Vlv  169 (448)
T 3aow_A           93 KEIIRDILVEIMEKYAD-KALQYGTTKGFTPLRETLMKWLGKRYGIS-QDNDIMITSGSQQALDLIGRVFL-NPGDIVVV  169 (448)
T ss_dssp             HHHHHHHHHHHHHHSHH-HHHSCCCTTCCHHHHHHHHHHHHHHHCCC-TTSEEEEESSHHHHHHHHHHHHC-CTTCEEEE
T ss_pred             HHHHHHHHHHHHHhhhH-HHhCCCCCCCcHHHHHHHHHHHHHhcCcC-ChhhEEEeCcHHHHHHHHHHHHc-CCCCEEEE
Confidence            46677777777765211 13679999999999999999998888876 78999999999999999999998 89999999


Q ss_pred             cCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEE-EeCCCCCCccCCCHHHHHHHHHHH
Q 009517          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALV-VINPGNPTGQVLAEENQRAIVDFC  299 (533)
Q Consensus       221 ~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~ii-l~~p~NPtG~~~s~~~l~~i~~l~  299 (533)
                      +.|+|+++...++..|++++.++++++   ++|+++|+++++.....+.++++|+ +++|+||||.+++.+++++|+++|
T Consensus       170 ~~p~y~~~~~~~~~~g~~~~~v~~~~~---g~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la  246 (448)
T 3aow_A          170 EAPTYLAALQAFNFYEPQYIQIPLDDE---GMKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELA  246 (448)
T ss_dssp             EESCCHHHHHHHHTTCCEEEEEEEETT---EECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHH
T ss_pred             eCCChHHHHHHHHHcCCEEEEeccCCC---CCCHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHH
Confidence            999999999999999999999999754   5899999999972211123688885 569999999999999999999999


Q ss_pred             HHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHh
Q 009517          300 KKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV  379 (533)
Q Consensus       300 ~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~  379 (533)
                      ++||++||+||+|.++.|++. ...++..+       +.++++|++.||||.+ + +|+|+||+++   ++++++.+...
T Consensus       247 ~~~~~~lI~De~y~~~~~~g~-~~~~~~~~-------~~~~~vi~~~S~SK~~-~-~GlriG~v~~---~~~l~~~l~~~  313 (448)
T 3aow_A          247 SEYDFIVVEDDPYGELRYSGN-PEKKIKAL-------DNEGRVIYLGTFSKIL-A-PGFRIGWMVG---DPGIIRKMEIA  313 (448)
T ss_dssp             HHHTCEEEEECSCTTCBCSSC-CCCCTGGG-------CTTSCEEEEEESTTTT-C-GGGCCEEEEE---CHHHHHHHHHH
T ss_pred             HHcCCEEEEECCCccccCCCC-CCcCHHhc-------CCCCCEEEEccchhhc-c-ccccEEEEEe---CHHHHHHHHHH
Confidence            999999999999999998653 33444443       2344689999999999 7 8999999998   89999998876


Q ss_pred             hh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC-CceEecCCceeEEecccCC
Q 009517          380 AS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNS-LE-GITCNKAEGAMYLFPRIQL  456 (533)
Q Consensus       380 ~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~-g~~~~~~~gg~~~~~~~~~  456 (533)
                      .. .++++++++|.++..+|+..        .+.++++++++.++++++.+.+.|++ +| |+.++.|.+|+|+|++++ 
T Consensus       314 ~~~~~~~~~~~~q~a~~~~L~~~--------~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~p~~g~~~~v~~~-  384 (448)
T 3aow_A          314 KQSTDLCTNVFGQVVAWRYVDGG--------YLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGMFIWVTLP-  384 (448)
T ss_dssp             HHHHHSSCCHHHHHHHHHHHHTT--------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSBSSEEEEECS-
T ss_pred             HHHhcCCCCHHHHHHHHHHHHhC--------CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEeCCCccEEEEEEcC-
Confidence            65 56778999999999988642        13456788889999999999999987 57 699999999999997664 


Q ss_pred             CHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCC-CCCceEEEEec-CCcCcHHHHHHHHHHHHHHHHH
Q 009517          457 PEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQV-PGTWHFRCTIL-PQEDKIPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~-~g~~~iRis~~-~~~e~i~~~~~~l~~~l~~~~~  529 (533)
                       .+         . +...++..+++ +||.+.||..|+.. .+.++|||+++ .++++|++++++|+++++++.+
T Consensus       385 -~~---------~-~~~~l~~~l~~-~gV~v~pg~~f~~~~~~~~~iRls~~~~~~e~i~~~~~~L~~~l~~~~~  447 (448)
T 3aow_A          385 -DG---------I-DSKKMLERAIK-KGVAYVPGEAFYAHRDVKNTMRLNFTYVDEDKIMEGIKRLAETIKEELK  447 (448)
T ss_dssp             -TT---------C-CHHHHHHHHHH-TTEECEEGGGGSTTCCCCSEEEEECSSSCTHHHHHHHHHHHHHHHHHHC
T ss_pred             -CC---------C-CHHHHHHHHHH-CCcEEEcchhhcCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHHHHh
Confidence             11         1 24455556555 59999999999642 24569999998 5789999999999999987653

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=100.00  E-value=3.2e-48  Score=399.38  Aligned_cols=380  Identities=17%  Similarity=0.245  Sum_probs=309.7

Q ss_pred             CcccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCC
Q 009517           62 NPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFS  141 (533)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p  141 (533)
                      ++++..++++++..+.+....+.  ..++      +++|||+.|.|..                      +.       |
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~--~~~g------~~~i~l~~~~~~~----------------------~~-------~   45 (396)
T 3jtx_A            3 NTLLKQLKPYPFARLHEAMQGIS--APEG------MEAVPLHIGEPKH----------------------PT-------P   45 (396)
T ss_dssp             HHHHHHCCSCHHHHHHHHTTTCC--CCTT------CCCEECSCCSCCS----------------------CC-------C
T ss_pred             hhhhccCCCChHHHHHHHHHhhh--hccC------CCeEEeCCcCCCC----------------------CC-------C
Confidence            44566677777655555444332  1122      2399999999875                      22       7


Q ss_pred             HHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCC-CCCC-CEEEcCChHHHHHHHHHHhccCCC----
Q 009517          142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFP-ADPN-DIFLTDGASPAVHMMMQLLIRSEN----  215 (533)
Q Consensus       142 ~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~-~~~~-~i~~t~G~~~al~~~~~~l~~~~g----  215 (533)
                      +.+++++.+.+..     ...|++..|..+||+++++++.+.+|.+ ++++ +|++|+|+++++..+++.++ ++|    
T Consensus        46 ~~v~~a~~~~~~~-----~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~al~~~~~~~~-~~g~~~~  119 (396)
T 3jtx_A           46 KVITDALTASLHE-----LEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVL-NPVSDGI  119 (396)
T ss_dssp             HHHHHHHHHTGGG-----GGSCCCTTCCHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHHHHHHHHHHHC-CC---CC
T ss_pred             HHHHHHHHHHhhh-----ccCCCCCCCcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHHHHHHHHHHHh-CCCCccC
Confidence            8888888887753     6789999999999999999999989987 7788 99999999999999999998 786    


Q ss_pred             -CeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHH
Q 009517          216 -DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRA  294 (533)
Q Consensus       216 -d~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~  294 (533)
                       |+|+++.|+|+++...++..|++++.++++ +++|.+|+++|++++++      ++++|++++||||||.+++.+++++
T Consensus       120 ~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~-~~g~~~d~~~l~~~~~~------~~~~v~l~~p~nptG~~~~~~~l~~  192 (396)
T 3jtx_A          120 KPAIVSPNPFYQIYEGATLLGGGEIHFANCP-APSFNPDWRSISEEVWK------RTKLVFVCSPNNPSGSVLDLDGWKE  192 (396)
T ss_dssp             CCEEEEEESCCHHHHHHHHHTTCEEEEEECC-TTTCCCCGGGSCHHHHH------TEEEEEEESSCTTTCCCCCHHHHHH
T ss_pred             CCEEEEcCCCcHhHHHHHHHcCCEEEEeecC-CCCCccCHHHHHHhhcc------CcEEEEEECCCCCCCCcCCHHHHHH
Confidence             799999999999999999999999999994 45788999999999987      7999999999999999999999999


Q ss_pred             HHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHH
Q 009517          295 IVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVRE  374 (533)
Q Consensus       295 i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~  374 (533)
                      |+++|++||+++|+||+|.++.+++. ...+.......+.  ....+++++.||||++ +++|+|+||+++   ++++++
T Consensus       193 i~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~i~~~s~sK~~-~~~G~r~G~~~~---~~~~~~  265 (396)
T 3jtx_A          193 VFDLQDKYGFIIASDECYSEIYFDGN-KPLGCLQAAAQLG--RSRQKLLMFTSLSKRS-NVPGLRSGFVAG---DAELLK  265 (396)
T ss_dssp             HHHHHHHHCCEEEEECTTTTCCSTTC-CCCCHHHHHHHTT--CCCTTEEEEEESTTTS-SCGGGCCEEEEE---CHHHHH
T ss_pred             HHHHHHHcCCEEEEEccccccccCCC-CCchHHhhhhhcc--cccCcEEEEecccccc-CCcccceEEEEe---CHHHHH
Confidence            99999999999999999999988763 2334333222221  1134579999999998 789999999998   999999


Q ss_pred             HHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecc
Q 009517          375 QIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPR  453 (533)
Q Consensus       375 ~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~  453 (533)
                      .+..... .++++++++|.++..+|+..           +++++++++++++++.+.+.|+++  +.+..+++++|+|++
T Consensus       266 ~~~~~~~~~~~~~~~~~~~a~~~~l~~~-----------~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~  332 (396)
T 3jtx_A          266 NFLLYRTYHGSAMSIPVQRASIAAWDDE-----------QHVIDNRRLYQEKFERVIPILQQV--FDVKLPDASFYIWLK  332 (396)
T ss_dssp             HHHHHHHHHTCCCCHHHHHHHHHHHHCC-----------HHHHHHHHHHHHHHHHHHHHHTTT--SCCCCCSSSSEEEEE
T ss_pred             HHHHHHhhcccCCCHHHHHHHHHHhCCH-----------HHHHHHHHHHHHHHHHHHHHHHhc--CCccCCCeeEEEEEE
Confidence            9987765 56788999999998888531           456778888999999999999876  456788999999976


Q ss_pred             cCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCC-----CCCCceEEEEecCCcCcHHHHHHHHHHHH
Q 009517          454 IQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ-----VPGTWHFRCTILPQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~-----~~g~~~iRis~~~~~e~i~~~~~~l~~~l  524 (533)
                      ++.             .+...++..+++++||.+.||..|+.     ..+.++|||+++.++++|++++++|++++
T Consensus       333 ~~~-------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l  395 (396)
T 3jtx_A          333 VPD-------------GDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVADVATCVKAAEDIVSLY  395 (396)
T ss_dssp             CTT-------------SCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCSCHHHHHHHHHHHHHHC
T ss_pred             CCC-------------CCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence            651             12455666777888999999999974     23456999999888999999999998865

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=100.00  E-value=6.7e-48  Score=399.44  Aligned_cols=386  Identities=20%  Similarity=0.302  Sum_probs=302.5

Q ss_pred             CcccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCC
Q 009517           62 NPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFS  141 (533)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p  141 (533)
                      ++++..++.+++..+...+.++...|++         +|||+.|.|..                      ..       |
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~---------~idl~~g~~~~----------------------~~-------~   52 (412)
T 2x5d_A           11 FARIDRLPPYVFNITAELKMAARRRGED---------IIDLSMGNPDG----------------------PT-------P   52 (412)
T ss_dssp             ----------CHHHHHHHHHHHHHTTCC---------CEECSSCCCCS----------------------CC-------C
T ss_pred             hHHHhhcCchHHHHHHHHHHHHhhcCCC---------EEecCCCCCCC----------------------CC-------C
Confidence            4456666667666666666666665555         99999999764                      21       6


Q ss_pred             HHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCC-CCEEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       142 ~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      +.+.+++.+++...   ....|++..|..+||+++++++.+.+|.++++ ++|++|+|+++++..+++.++ ++||+|++
T Consensus        53 ~~v~~a~~~~~~~~---~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~~-~~gd~Vl~  128 (412)
T 2x5d_A           53 PHIVEKLCTVAQRE---DTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATL-DHGDTILV  128 (412)
T ss_dssp             HHHHHHHHHTC------------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHHHHHHHHHHC-CTTCEEEE
T ss_pred             HHHHHHHHHHHhCC---CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHHHHHHHHHhC-CCCCEEEE
Confidence            88888888777542   14579888899999999999999888877788 799999999999999999998 89999999


Q ss_pred             cCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHH
Q 009517          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (533)
Q Consensus       221 ~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~  300 (533)
                      +.|+|+++...++..|.+++.++++++.+|.+|++.|++++++      ++++|++++||||||.+++.+++++|+++|+
T Consensus       129 ~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~  202 (412)
T 2x5d_A          129 PNPSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELERAIRESIP------KPRMMILGFPSNPTAQCVELDFFERVVALAK  202 (412)
T ss_dssp             EESCCHHHHHHHHHHTCEEEEEECSTTSCHHHHHHHHHHTEES------CCSEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred             cCCCchhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHhccc------CceEEEECCCCCCCCCcCCHHHHHHHHHHHH
Confidence            9999999999999999999999998655666899999988864      7899999999999999999999999999999


Q ss_pred             HcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhh
Q 009517          301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA  380 (533)
Q Consensus       301 ~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~  380 (533)
                      +||+++|+||+|.++.+++. ...++..+.      .....++++.||||.+ |++|+|+||+++   ++++++.+....
T Consensus       203 ~~~~~li~De~~~~~~~~g~-~~~~~~~~~------~~~~~~i~~~s~sK~~-~~~G~r~G~~~~---~~~~~~~l~~~~  271 (412)
T 2x5d_A          203 QYDVMVVHDLAYADIVYDGW-KAPSIMQVP------GAKDIAVEFFTLSKSY-NMAGWRIGFMVG---NPELVSALARIK  271 (412)
T ss_dssp             HHTCEEEEECTTTTCBCTTC-CCCCGGGST------TGGGTEEEEEECC-CC-SCTTSCCEEEEE---CHHHHHHHHHHH
T ss_pred             HcCCEEEEeccccccccCCC-CCCChhhcc------CccCcEEEEecCcccc-CCcccceEEEEc---CHHHHHHHHHHH
Confidence            99999999999999988653 233443321      0123579999999999 889999999998   999999988766


Q ss_pred             h-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHH
Q 009517          381 S-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEK  459 (533)
Q Consensus       381 ~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~  459 (533)
                      . .++++++++|.++..+|+...          +++++++++++++++++.+.|+++ |+.++.+++|+|+|++++  .+
T Consensus       272 ~~~~~~~~~~~~~a~~~~l~~~~----------~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~--~~  338 (412)
T 2x5d_A          272 SYHDYGTFTPLQVAAIAALEGDQ----------QCVRDIARQYQQRRDVLVKGLREA-GWMVENPKASMYVWAKIP--EP  338 (412)
T ss_dssp             HHHCCCCCHHHHHHHHHHHHSCS----------HHHHHHHHHHHHHHHHHHHHHHHH-TCCCCCCSBSSEEEEECC--TT
T ss_pred             hhhccCCCHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHHHHHHHHHHHC-CCEecCCCeeeEEEEEcC--Cc
Confidence            5 568889999999998886432          346778888999999999999988 888888999999997653  11


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHHHH
Q 009517          460 AIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~  527 (533)
                      .       +..+...++..+++++||.+.||..|+. .+.++|||+++.++++|++++++|+++++++
T Consensus       339 ~-------~~~~~~~~~~~l~~~~gi~v~~g~~f~~-~~~~~iRis~~~~~~~l~~~l~~l~~~l~~~  398 (412)
T 2x5d_A          339 Y-------AHLGSLEFAKKLLQDAKVSVSPGIGFGD-YGDDHVRFALIENRDRLRQAVRGIKAMFRAD  398 (412)
T ss_dssp             T-------GGGCHHHHHHHHHHHHCEECEEGGGGCG-GGTTEEEEECCSCHHHHHHHHHHHHHHHHHT
T ss_pred             c-------CCCCHHHHHHHHHHHCCEEEeCchhhCC-CCCCeEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence            0       0002445566666778999999999863 3445999999888899999999999998764

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=100.00  E-value=1.2e-47  Score=396.68  Aligned_cols=387  Identities=27%  Similarity=0.485  Sum_probs=311.9

Q ss_pred             cCcccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCC
Q 009517           61 LNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLF  140 (533)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~  140 (533)
                      +++++..+.++.+..+. .++++...+++         +|+|+.|.|...+                   ++.       
T Consensus        12 ~~~~~~~~~~~~~~~~~-~~~~~~~~g~~---------~i~l~~~~~~~~~-------------------~~~-------   55 (406)
T 1xi9_A           12 ASKRALSVEYAIRDVVL-PARELEKKGIK---------VIRLNIGDPVKFD-------------------FQP-------   55 (406)
T ss_dssp             CCHHHHTCCC--------CHHHHHHTTCC---------CEECCCCCGGGTT-------------------CCC-------
T ss_pred             HHHHHhcCChhHHHHHH-HHHHHHHcCCC---------EEEecCCCCCcCC-------------------CCC-------
Confidence            35577788888888888 88888776665         9999999983100                   011       


Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      |+.+++++.+.+..    ....|++..|..++|+++++++.+.+|+++++++|++|+|+++|+..+++.++ ++||+|++
T Consensus        56 ~~~v~~a~~~~~~~----~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~-~~gd~Vl~  130 (406)
T 1xi9_A           56 PEHMKEAYCKAIKE----GHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALL-DPGDEILV  130 (406)
T ss_dssp             CHHHHHHHHHHHHT----TCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEE
T ss_pred             CHHHHHHHHHHHhc----CCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHHHHHHHHHhC-CCCCEEEE
Confidence            68889998888865    23479988899999999999999988888889999999999999999999998 79999999


Q ss_pred             cCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHH
Q 009517          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (533)
Q Consensus       221 ~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~  300 (533)
                      ++|+|+++...++..|++++.++++++.+|.+|++.|++++++      ++++|++++|+||||.+++.+++++|+++|+
T Consensus       131 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~  204 (406)
T 1xi9_A          131 PGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITD------RTKAIAVINPNNPTGALYDKKTLEEILNIAG  204 (406)
T ss_dssp             EESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred             cCCCCccHHHHHHHcCCEEEEeecCCCcCCcCCHHHHHHhhCc------CceEEEEECCCCCCCCCcCHHHHHHHHHHHH
Confidence            9999999999999999999999987645778999999999976      7999999999999999999999999999999


Q ss_pred             HcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCce-EEEEecCCccCCCCCCCeeEEEE--EecCCH----HHH
Q 009517          301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDIS-LVSFQSVSKGYYGECGKRGGYME--VTGFSA----EVR  373 (533)
Q Consensus       301 ~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-vi~i~S~SK~~~gl~G~riG~v~--~~~~~~----~~~  373 (533)
                      +||+++|+||+|.++.+++  ...++..+       + ... +|++.||||.+ |++|+|+||++  +   ++    +++
T Consensus       205 ~~~~~li~De~~~~~~~~~--~~~~~~~~-------~-~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~---~~~~~~~l~  270 (406)
T 1xi9_A          205 EYEIPVISDEIYDLMTYEG--EHISPGSL-------T-KDVPVIVMNGLSKVY-FATGWRLGYMYFVD---PENKLSEVR  270 (406)
T ss_dssp             HHTCCEEEECTTTTCBSSS--CCCCHHHH-------C-SSSCEEEEEESTTTT-CCGGGCCEEEEEEC---TTCTTHHHH
T ss_pred             HcCCEEEEEcCccccccCC--CCCCHHHc-------C-CCceEEEEecccccc-CCCccEEEEEEEec---CchhHHHHH
Confidence            9999999999999988833  23444443       2 224 68899999999 78999999998  7   77    899


Q ss_pred             HHHHHhhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecc
Q 009517          374 EQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPR  453 (533)
Q Consensus       374 ~~l~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~  453 (533)
                      +.+.......++++++.|.++.++|+...          +++++++++++++++++.+.|+++||+.++.+++++|+|++
T Consensus       271 ~~l~~~~~~~~~~~~~~~~a~~~~l~~~~----------~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~  340 (406)
T 1xi9_A          271 EAIDRLARIRLCPNTPAQFAAIAGLTGPM----------DYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPK  340 (406)
T ss_dssp             HHHHHHHHHTCCSCSHHHHHHHHHHHSCC----------HHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCE
T ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHhCCc----------HHHHHHHHHHHHHHHHHHHHHHhCCCCeeecCCeeEEEEEe
Confidence            88887665227889999999988884322          23567788899999999999999889998889999999976


Q ss_pred             cCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHHHHHH
Q 009517          454 IQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~~~  529 (533)
                      ++...         + .+...++..+++++||.+.||..|+. .+.++|||+++.++++|++++++|+++++++.+
T Consensus       341 ~~~~~---------~-~~~~~l~~~l~~~~gi~v~~g~~f~~-~~~~~lRis~~~~~~~i~~~~~~l~~~l~~~~~  405 (406)
T 1xi9_A          341 IEVGP---------W-KNDKEFVLDVLHNAHVLFVHGSGFGE-YGAGHFRAVFLPPIEILEEAMDRFEKFMKERLK  405 (406)
T ss_dssp             ECSCS---------C-SSHHHHHHHHHHHHCEECEEGGGGCG-GGTTBEEEECCSCHHHHHHHHHHHHHHHHHC--
T ss_pred             cCccC---------C-CCHHHHHHHHHHhCCEEEeCchhcCC-CCCCEEEEEecCCHHHHHHHHHHHHHHHHHHhc
Confidence            54100         0 12445555666688999999999873 334599999998889999999999999887543

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=100.00  E-value=5.8e-48  Score=400.99  Aligned_cols=395  Identities=18%  Similarity=0.264  Sum_probs=316.0

Q ss_pred             CcccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCC
Q 009517           62 NPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFS  141 (533)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p  141 (533)
                      ++++..++++++..+...+.     +.+         +|+|+.|+|++                      +.       |
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~-----~~~---------~i~l~~g~~~~----------------------~~-------~   43 (422)
T 3fvs_A            7 ARRLDGIDYNPWVEFVKLAS-----EHD---------VVNLGQGFPDF----------------------PP-------P   43 (422)
T ss_dssp             CGGGTTCCCCHHHHHHHHHH-----TSC---------CEECCCSSCSS----------------------CC-------C
T ss_pred             HHHhhccCccHHHHHHHHhh-----cCC---------ceEeCCCCCCC----------------------CC-------C
Confidence            45666677776655554432     223         89999999875                      22       7


Q ss_pred             HHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCC-CCEEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       142 ~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      +.+++++.+++....  ....|++..|..++|+++++++++.+|.++++ ++|++|+|+++++..+++.++ ++||+|++
T Consensus        44 ~~v~~a~~~~~~~~~--~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~~~-~~gd~vl~  120 (422)
T 3fvs_A           44 DFAVEAFQHAVSGDF--MLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALV-DEGDEVII  120 (422)
T ss_dssp             HHHHHHHHHHHHSCG--GGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHC-CTTCEEEE
T ss_pred             HHHHHHHHHHHhCCC--ccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHHHHHHHHHc-CCCCEEEE
Confidence            889999988887621  14689999999999999999999999988888 799999999999999999998 89999999


Q ss_pred             cCCcCcchHHHHHHhCCeEEEEecCC----------CCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHH
Q 009517          221 PIPQYPLYSASIALHGGTLVPYYLDE----------ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE  290 (533)
Q Consensus       221 ~~p~~~~~~~~~~~~g~~~~~v~~~~----------~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~  290 (533)
                      +.|+|+++...++..|.+++.++++.          ..+|.+|++++++++++      ++++|++++||||||.+++.+
T Consensus       121 ~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~------~~~~v~~~~p~nptG~~~~~~  194 (422)
T 3fvs_A          121 IEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTS------RTKALVLNTPNNPLGKVFSRE  194 (422)
T ss_dssp             EESCCTTHHHHHHHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCT------TEEEEEEESSCTTTCCCCCHH
T ss_pred             cCCCchhhHHHHHHcCCEEEEEecccccccccccccccCCCCCHHHHHhhcCC------CceEEEECCCCCCCCcCCCHH
Confidence            99999999999999999999999986          23677999999999876      799999999999999999999


Q ss_pred             HHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCH
Q 009517          291 NQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSA  370 (533)
Q Consensus       291 ~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~  370 (533)
                      ++++|+++|++||+++|+||+|.++.|++. ...++..+.      ....+++++.||||.+ |++|+|+||+++   ++
T Consensus       195 ~l~~i~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~------~~~~~~i~~~S~sK~~-g~~G~r~G~~~~---~~  263 (422)
T 3fvs_A          195 ELELVASLCQQHDVVCITDEVYQWMVYDGH-QHISIASLP------GMWERTLTIGSAGKTF-SATGWKVGWVLG---PD  263 (422)
T ss_dssp             HHHHHHHHHHHHTCEEEEECTTTTCBCTTC-CCCCGGGST------TTGGGEEEEEEHHHHH-TCGGGCCEEEEC---CH
T ss_pred             HHHHHHHHHHHcCcEEEEEccchhhccCCC-CCCChhhcc------cccCcEEEEecchhcc-CCccceEEEEEe---CH
Confidence            999999999999999999999999998764 334443331      1124679999999999 889999999998   99


Q ss_pred             HHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeE
Q 009517          371 EVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMY  449 (533)
Q Consensus       371 ~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~  449 (533)
                      ++++.+..... .+++++++.|.++..+|+....   .+..+.+++++++++++++++.+.+.|+++ |+.++.|++++|
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~  339 (422)
T 3fvs_A          264 HIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQL---LFRQPSSYFVQFPQAMQRCRDHMIRSLQSV-GLKPIIPQGSYF  339 (422)
T ss_dssp             HHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHH---TTTCTTCHHHHHHHHHHHHHHHHHHHHHTT-TCEEEBCSBSSE
T ss_pred             HHHHHHHHHHhhccCCCCcHHHHHHHHHHhhccc---cccchHHHHHHHHHHHHHHHHHHHHHHHHc-CCeecCCCeeeE
Confidence            99999887765 5688899999999888752000   000012345778889999999999999998 999999999999


Q ss_pred             EecccCCCHHHHHHHHhcCCCC----hHHHHHHHHHccceEEEcCCCCCC----CCCCceEEEEecCCcCcHHHHHHHHH
Q 009517          450 LFPRIQLPEKAIKAAEAEKTVP----DAFYCRRLLNATGIVLVPGSGFGQ----VPGTWHFRCTILPQEDKIPAIVTRLT  521 (533)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ll~~~gV~v~pg~~f~~----~~g~~~iRis~~~~~e~i~~~~~~l~  521 (533)
                      +|+++....   .........+    +..++..+++++||.+.||+.|+.    ..+.++|||+++.++++|++++++|+
T Consensus       340 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~i~~~l~~l~  416 (422)
T 3fvs_A          340 LITDISDFK---RKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQAMDEKLR  416 (422)
T ss_dssp             EEEECHHHH---HHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCCCHHHHHHHHHHHH
T ss_pred             EEEechhhc---ccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEecCCHHHHHHHHHHHH
Confidence            997664110   0000000000    446677788889999999999863    23456999999999999999999999


Q ss_pred             HHHHH
Q 009517          522 DFHKN  526 (533)
Q Consensus       522 ~~l~~  526 (533)
                      +++++
T Consensus       417 ~~l~~  421 (422)
T 3fvs_A          417 KWKVE  421 (422)
T ss_dssp             HHHHC
T ss_pred             HHHhh
Confidence            98764

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=100.00  E-value=9.7e-48  Score=399.86  Aligned_cols=398  Identities=17%  Similarity=0.224  Sum_probs=303.0

Q ss_pred             cCcccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCC
Q 009517           61 LNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLF  140 (533)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~  140 (533)
                      +++++..++++++..+...+.+.   +++         +|+|+.|.|+.. ..|..-   +....      ..       
T Consensus         7 ~s~~~~~~~~~~~~~~~~~~~~~---~~~---------~i~l~~G~p~~~-~~p~~~---~~~~~------~~-------   57 (425)
T 2r2n_A            7 ITAASAARNPSPIRTMTDILSRG---PKS---------MISLAGGLPNPN-MFPFKT---AVITV------EN-------   57 (425)
T ss_dssp             SCHHHHTCCCCSGGGHHHHHHHS---CTT---------CEECCCCCCCGG-GCSEEE---EEEEE------TT-------
T ss_pred             HHHHHhcCCCchHHHHHHHhhcC---CCC---------eEEcCCcCCCch-hCCHHH---HHHHH------hh-------
Confidence            45677778888887777665432   123         899999999841 111100   00000      00       


Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCC-------CCCEEEcCChHHHHHHHHHHhccC
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPAD-------PNDIFLTDGASPAVHMMMQLLIRS  213 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~-------~~~i~~t~G~~~al~~~~~~l~~~  213 (533)
                      +..+ ....+....     ...|++..|+++||+++++++.+.+|.+.+       +++|++|+|+++++..++++++ +
T Consensus        58 ~~~~-~~~~~~~~~-----~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~-~  130 (425)
T 2r2n_A           58 GKTI-QFGEEMMKR-----ALQYSPSAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMII-N  130 (425)
T ss_dssp             SCCE-EECHHHHHH-----HTSCCCTTCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHC-C
T ss_pred             cccc-cccccchhh-----hcCCCCCCCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhC-C
Confidence            0000 000011111     346999999999999999999988897764       3799999999999999999998 8


Q ss_pred             CCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHH------hcCCCeeEEEE-eCCCCCCccC
Q 009517          214 ENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAK------AKGITVRALVV-INPGNPTGQV  286 (533)
Q Consensus       214 ~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~------~~g~~~~~iil-~~p~NPtG~~  286 (533)
                      +||+|++++|+|+++...++..|++++.++++++   ++|+++|+++++...      ..+.++++|++ ++||||||.+
T Consensus       131 ~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~---~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~  207 (425)
T 2r2n_A          131 PGDNVLLDEPAYSGTLQSLHPLGCNIINVASDES---GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNS  207 (425)
T ss_dssp             TTCEEEEESSCCHHHHHHHGGGTCEEEEECEETT---EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHcCCEEEEeCcCCC---CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCc
Confidence            9999999999999999999999999999998753   689999999987310      00125788877 5899999999


Q ss_pred             CCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEe
Q 009517          287 LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVT  366 (533)
Q Consensus       287 ~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~  366 (533)
                      ++.+++++|+++|++||++||+||+|.++.|++. +..++..+       +.+.++|++.||||++ + +|+|+||+++ 
T Consensus       208 ~~~~~l~~l~~~a~~~~~~li~De~~~~~~~~g~-~~~~~~~~-------~~~~~~i~~~s~SK~~-~-~GlRiG~~~~-  276 (425)
T 2r2n_A          208 LTSERKKEIYELARKYDFLIIEDDPYYFLQFNKF-RVPTFLSM-------DVDGRVIRADSFSKII-S-SGLRIGFLTG-  276 (425)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSS-CCCCTGGG-------CTTSCEEEEEESTTTT-C-STTCCEEEEE-
T ss_pred             CCHHHHHHHHHHHHHcCCEEEEECCcccccCCCC-CCCCcccc-------CCCCCEEEEccchhhc-c-CccceEEEec-
Confidence            9999999999999999999999999999988653 34444443       2344689999999999 7 9999999998 


Q ss_pred             cCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCc-eEec
Q 009517          367 GFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNS-LEGI-TCNK  443 (533)
Q Consensus       367 ~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~-~~~~  443 (533)
                        ++++++.+..... .++++++++|.++..+|+..     ....+.++++++++.++++++.+.+.|++ +||+ .+..
T Consensus       277 --~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~  349 (425)
T 2r2n_A          277 --PKPLIERVILHIQVSTLHPSTFNQLMISQLLHEW-----GEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHV  349 (425)
T ss_dssp             --EHHHHHHHHHHHHTTTCSSCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECC
T ss_pred             --CHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc-----ccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeC
Confidence              8999999887765 56889999999999888520     00124466788899999999999999988 5776 5678


Q ss_pred             CCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCC--CCCceEEEEec-CCcCcHHHHHHHH
Q 009517          444 AEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQV--PGTWHFRCTIL-PQEDKIPAIVTRL  520 (533)
Q Consensus       444 ~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~--~g~~~iRis~~-~~~e~i~~~~~~l  520 (533)
                      |.+|+|+|++++..            .+...++.+.|.++||.+.||..|+..  .+.++|||+++ .++++|++++++|
T Consensus       350 p~~g~~~~~~~~~~------------~~~~~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~~~~~~i~~~~~~l  417 (425)
T 2r2n_A          350 PAAGMFLWIKVKGI------------NDVKELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSSASPEQMDVAFQVL  417 (425)
T ss_dssp             CSBSSEEEEEETTC------------SCCHHHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECSSCCHHHHHHHHHHH
T ss_pred             CCceEEEEEEeCCC------------CCHHHHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeCCCCHHHHHHHHHHH
Confidence            99999999876521            123333346677899999999999743  23469999998 8999999999999


Q ss_pred             HHHHHHH
Q 009517          521 TDFHKNF  527 (533)
Q Consensus       521 ~~~l~~~  527 (533)
                      ++++++.
T Consensus       418 ~~~l~~~  424 (425)
T 2r2n_A          418 AQLIKES  424 (425)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9988753

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-47  Score=401.07  Aligned_cols=388  Identities=18%  Similarity=0.265  Sum_probs=305.6

Q ss_pred             CccccccchHHHHHHH----HHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHH
Q 009517           68 CEYAVRGEIVSIAQRL----QQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSAD  143 (533)
Q Consensus        68 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~  143 (533)
                      ++++++..+...+.++    +..+++         +|||+.|.|+.                      +.       |+.
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~i~l~~g~~~~----------------------~~-------~~~   74 (447)
T 3b46_A           33 TAKDVWSLTNEAAAKAANNSKNQGRE---------LINLGQGFFSY----------------------SP-------PQF   74 (447)
T ss_dssp             CCCCHHHHHHHHHHHHCCC---TTSC---------CEECCCCSCSS----------------------CC-------CHH
T ss_pred             cCccHHHHHHHHHHhhccchhccCCC---------eEEccCCCCCC----------------------CC-------CHH
Confidence            4455555555555443    223334         99999999874                      21       688


Q ss_pred             HHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCC
Q 009517          144 SIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIP  223 (533)
Q Consensus       144 v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p  223 (533)
                      +.+++.+++.+.   ....|++..|..+||+++++++.+.+|.++++++|++|+|+++|+..+++.++ ++||+|++++|
T Consensus        75 v~~a~~~~~~~~---~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~~~~~l~-~~gd~Vlv~~p  150 (447)
T 3b46_A           75 AIKEAQKALDIP---MVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGILSCLMGLL-NAGDEVIVFEP  150 (447)
T ss_dssp             HHHHHHHHTTSG---GGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEEES
T ss_pred             HHHHHHHHHhCc---CCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHHc-CCCCEEEEeCC
Confidence            898888888641   24679999999999999999999888888888999999999999999999998 89999999999


Q ss_pred             cCcchHHHHHHhCCeEEEEecCCCC----------CCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHH
Q 009517          224 QYPLYSASIALHGGTLVPYYLDEAT----------GWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQR  293 (533)
Q Consensus       224 ~~~~~~~~~~~~g~~~~~v~~~~~~----------~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~  293 (533)
                      +|+.|...++..|++++.+++++++          +|++|+++|++++++      ++++|++++||||||.++|.++++
T Consensus       151 ~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~------~~~~v~l~~p~nptG~~~~~~~l~  224 (447)
T 3b46_A          151 FFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITS------KTKAVIINTPHNPIGKVFTREELT  224 (447)
T ss_dssp             CCTTHHHHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHH
T ss_pred             CchhHHHHHHHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhhcc------CCeEEEEeCCCCCCCcccCHHHHH
Confidence            9999999999999999999987653          678999999999875      799999999999999999999999


Q ss_pred             HHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHH
Q 009517          294 AIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVR  373 (533)
Q Consensus       294 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~  373 (533)
                      +|+++|++||++||+||+|.++.|++  +..++..+..+.     ..+++++.||||++ |++|||+||+++  .+++++
T Consensus       225 ~i~~l~~~~~~~li~De~~~~~~~~g--~~~~~~~~~~~~-----~~~~i~i~S~sK~~-~~~G~riG~~~~--~~~~l~  294 (447)
T 3b46_A          225 TLGNICVKHNVVIISDEVYEHLYFTD--SFTRIATLSPEI-----GQLTLTVGSAGKSF-AATGWRIGWVLS--LNAELL  294 (447)
T ss_dssp             HHHHHHHHTTCEEEEECTTTTCBCSS--CCCCGGGSCHHH-----HTTEEEEEEHHHHT-TCTTSCCEEEEC--SCHHHH
T ss_pred             HHHHHHHHcCcEEEEeccchhcccCC--CCcCHHHcCCCC-----CCcEEEEecCchhc-CCcchhhEEEEe--CCHHHH
Confidence            99999999999999999999999865  233433320111     12468999999999 889999999985  278899


Q ss_pred             HHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEec
Q 009517          374 EQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFP  452 (533)
Q Consensus       374 ~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~  452 (533)
                      +.+..... .+++++++.|.++..+|+..        ...+++++++++++++++++.+.|+++ |+.++.|++|+|+|+
T Consensus       295 ~~l~~~~~~~~~~~~~~~~~a~~~aL~~~--------~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~  365 (447)
T 3b46_A          295 SYAAKAHTRICFASPSPLQEACANSINDA--------LKIGYFEKMRQEYINKFKIFTSIFDEL-GLPYTAPEGTYFVLV  365 (447)
T ss_dssp             HHHHHHHHHHTSSCCHHHHHHHHHHHHHH--------HHHTHHHHHHHHHHHHHHHHHHHHHHH-TCCEECCSBSSEEEE
T ss_pred             HHHHHHHhhccCCCChHHHHHHHHHHhCC--------cchHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCeeEEEEE
Confidence            88887654 66788999999988887421        113446778899999999999999998 899889999999997


Q ss_pred             ccCCC---HHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCC----CCceEEEEecCCcCcHHHHHHHHHH
Q 009517          453 RIQLP---EKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVP----GTWHFRCTILPQEDKIPAIVTRLTD  522 (533)
Q Consensus       453 ~~~~~---~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~----g~~~iRis~~~~~e~i~~~~~~l~~  522 (533)
                      +++..   .+...........++..++..+++++||.+.||..|+...    +.++|||+++.++++|++++++|++
T Consensus       366 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~~~~e~l~~~~~~l~~  442 (447)
T 3b46_A          366 DFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVCKDDAYLENAVERLKL  442 (447)
T ss_dssp             ECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECCSCHHHHHHHHHHGGG
T ss_pred             ecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEeCCHHHHHHHHHHHHH
Confidence            76421   0000000000001244566677778999999999997421    2459999999888999999999976

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=100.00  E-value=4.4e-47  Score=390.09  Aligned_cols=380  Identities=25%  Similarity=0.417  Sum_probs=309.5

Q ss_pred             CcccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCC
Q 009517           62 NPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFS  141 (533)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p  141 (533)
                      ++++..++++++..+...+.+.    ++         +|+|+.|.|+.                      +.       |
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~----~~---------~i~l~~~~~~~----------------------~~-------~   41 (389)
T 1gd9_A            4 SDRLELVSASEIRKLFDIAAGM----KD---------VISLGIGEPDF----------------------DT-------P   41 (389)
T ss_dssp             HHHHHHSCCCHHHHHHHHHHTC----SS---------CEECCCCSCSS----------------------CC-------C
T ss_pred             hhHhHhCChhHHHHHHHHHhhh----cC---------eEecCCCCCCC----------------------CC-------C
Confidence            4456666666655555544432    23         89999999864                      21       6


Q ss_pred             HHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCC-EEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPND-IFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       142 ~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~-i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      +.+.+++.+.+..    ....|++..|..+||+++++++.+.+|.++++++ |++|+|+++++..+++.++ ++||+|++
T Consensus        42 ~~v~~a~~~~~~~----~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~-~~gd~vl~  116 (389)
T 1gd9_A           42 QHIKEYAKEALDK----GLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFL-KDGEEVLI  116 (389)
T ss_dssp             HHHHHHHHHHHHT----TCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTC-CTTCEEEE
T ss_pred             HHHHHHHHHHHhC----CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHHHHHhC-CCCCEEEE
Confidence            8899998888875    2457998889999999999999988888788899 9999999999999999987 79999999


Q ss_pred             cCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHH
Q 009517          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (533)
Q Consensus       221 ~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~  300 (533)
                      ++|+|+++...++..|.+++.++++++++|.+|+++|++++++      ++++|++++||||||.++|.+++++|+++|+
T Consensus       117 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~  190 (389)
T 1gd9_A          117 PTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTD------KTRALIINSPCNPTGAVLTKKDLEEIADFVV  190 (389)
T ss_dssp             EESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred             cCCCchhHHHHHHHCCCEEEEeccCCccCCCCCHHHHHHhcCc------CceEEEEECCCCCCCcCCCHHHHHHHHHHHH
Confidence            9999999999999999999999998655688999999999875      7899999999999999999999999999999


Q ss_pred             HcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhh
Q 009517          301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA  380 (533)
Q Consensus       301 ~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~  380 (533)
                      +||+++|+||+|.++.+++. +..++..+.      ....+++++.||||.+ |++|+|+||+++   ++++++.+....
T Consensus       191 ~~~~~li~De~~~~~~~~~~-~~~~~~~~~------~~~~~~i~~~s~sK~~-~~~G~r~G~~~~---~~~~~~~l~~~~  259 (389)
T 1gd9_A          191 EHDLIVISDEVYEHFIYDDA-RHYSIASLD------GMFERTITVNGFSKTF-AMTGWRLGFVAA---PSWIIERMVKFQ  259 (389)
T ss_dssp             HTTCEEEEECTTTTCBCTTC-CCCCGGGST------TCGGGEEEEEESTTTT-TCGGGCCEEEEC---CHHHHHHHHHHH
T ss_pred             HcCCEEEEehhhhhcccCCC-CCCCHhhcc------CCCCCEEEEecChhhc-CCcccceEEEEE---CHHHHHHHHHHH
Confidence            99999999999999888653 233433321      0123578999999998 889999999998   899999888766


Q ss_pred             h-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHH
Q 009517          381 S-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEK  459 (533)
Q Consensus       381 ~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~  459 (533)
                      . .+++++++.|.++..+|+...       . .+++++++++++++++++.+.|+++ |+.+..+++++|+|++++  ..
T Consensus       260 ~~~~~~~~~~~~~a~~~~l~~~~-------~-~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~--~~  328 (389)
T 1gd9_A          260 MYNATCPVTFIQYAAAKALKDER-------S-WKAVEEMRKEYDRRRKLVWKRLNEM-GLPTVKPKGAFYIFPRIR--DT  328 (389)
T ss_dssp             TTTTCSCCHHHHHHHHHHHTCHH-------H-HHHHHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCBTTEECCBCG--GG
T ss_pred             hhhccCCCHHHHHHHHHHHhCCC-------c-chHHHHHHHHHHHHHHHHHHHHHHc-CCeecCCCeeeEEEEecc--CC
Confidence            5 567889999999998886311       1 1256778889999999999999998 888888999999997654  10


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHHH
Q 009517          460 AIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~  526 (533)
                              +. +...++..+++++||.+.||..|+. .+.++|||+++.++++|++++++|++++++
T Consensus       329 --------~~-~~~~~~~~l~~~~gi~v~~g~~~~~-~~~~~iRi~~~~~~~~i~~~l~~l~~~~~~  385 (389)
T 1gd9_A          329 --------GL-TSKKFSELMLKEARVAVVPGSAFGK-AGEGYVRISYATAYEKLEEAMDRMERVLKE  385 (389)
T ss_dssp             --------TC-CHHHHHHHHHHHTCEECEEGGGGCG-GGTTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             --------CC-CHHHHHHHHHHhCCEEEeCchhhCC-CCCCeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence                    11 2345555665589999999998873 344599999988889999999999998865

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=100.00  E-value=1.8e-46  Score=385.66  Aligned_cols=373  Identities=26%  Similarity=0.409  Sum_probs=312.4

Q ss_pred             cCcccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCC
Q 009517           61 LNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLF  140 (533)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~  140 (533)
                      +++++...+++++..+...+.+....|++         +|+|+.|.|..                      +.       
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---------~i~l~~~~~~~----------------------~~-------   55 (389)
T 1o4s_A           14 VSRRISEIPISKTMELDAKAKALIKKGED---------VINLTAGEPDF----------------------PT-------   55 (389)
T ss_dssp             CCHHHHHSCCCSSHHHHHHHHHHHHTTCC---------CEECCCSSCSS----------------------CC-------
T ss_pred             HHHHHhhcCccHHHHHHHHHHHHHhcCCC---------EEEccCCCCCC----------------------CC-------
Confidence            35567778888888888888777665555         99999999863                      21       


Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      |+.+.+++.+.+..    ....|++..|..+||+++++++.+.+|.++++++|++|+|+++++..+++.++ ++||+|++
T Consensus        56 ~~~v~~a~~~~~~~----~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~~~~l~-~~gd~Vl~  130 (389)
T 1o4s_A           56 PEPVVEEAVRFLQK----GEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALL-DPGDEVIV  130 (389)
T ss_dssp             CHHHHHHHHHHHTT----CCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEE
T ss_pred             CHHHHHHHHHHHhc----CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHHHHHhC-CCCCEEEE
Confidence            68888888888865    23579888899999999999999888887789999999999999999999998 79999999


Q ss_pred             cCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHH
Q 009517          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (533)
Q Consensus       221 ~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~  300 (533)
                      ++|+|+++...++..|.+++.++++++++|.+|+++|++++++      ++++|++++|+||||.+++.+++++|+++|+
T Consensus       131 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~  204 (389)
T 1o4s_A          131 FSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVG------KTKAVLINSPNNPTGVVYRREFLEGLVRLAK  204 (389)
T ss_dssp             EESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred             cCCCchhHHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhccc------CceEEEEcCCCCCCCCCCCHHHHHHHHHHHH
Confidence            9999999999999999999999997655788999999999876      7899999999999999999999999999999


Q ss_pred             HcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhh
Q 009517          301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA  380 (533)
Q Consensus       301 ~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~  380 (533)
                      ++|+++|+||+|.++.+++  +..++..+.      .....++++.||||.+ |++|+|+||+++   ++++++.+....
T Consensus       205 ~~~~~li~Dea~~~~~~~g--~~~~~~~~~------~~~~~~i~~~s~sK~~-~~~G~r~G~l~~---~~~~~~~l~~~~  272 (389)
T 1o4s_A          205 KRNFYIISDEVYDSLVYTD--EFTSILDVS------EGFDRIVYINGFSKSH-SMTGWRVGYLIS---SEKVATAVSKIQ  272 (389)
T ss_dssp             HHTCEEEEECTTTTSBCSS--CCCCHHHHC------SSSTTEEEEEESTTTT-TCGGGCCEEEEC---CHHHHHHHHHHH
T ss_pred             HcCCEEEEEccccccccCC--CCCCHhhcC------CCCCcEEEEeechhhc-CCcccceEEEEe---CHHHHHHHHHHh
Confidence            9999999999999988865  234544431      1123578999999999 789999999998   899999888776


Q ss_pred             h-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHH
Q 009517          381 S-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEK  459 (533)
Q Consensus       381 ~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~  459 (533)
                      . .++++++++|.++..+|+..             +++++++++++++++.+.|+++ |+.++.+++++|+|++++ .  
T Consensus       273 ~~~~~~~~~~~~~a~~~~l~~~-------------~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~-~--  335 (389)
T 1o4s_A          273 SHTTSCINTVAQYAALKALEVD-------------NSYMVQTFKERKNFVVERLKKM-GVKFVEPEGAFYLFFKVR-G--  335 (389)
T ss_dssp             HHHTCSCCHHHHHHHHHHTTCC-------------CHHHHHHHHHHHHHHHHHHHHT-TCCCCCCSBSSEEEEECS-S--
T ss_pred             hhcccCCCHHHHHHHHHHHhcc-------------HHHHHHHHHHHHHHHHHHHHhc-CCeeecCCcceEEEEeCC-C--
Confidence            5 56788999999998888642             3556778889999999999998 888888999999997654 1  


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHH
Q 009517          460 AIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~  525 (533)
                                 +...++..+++++||.+.||..|+. ++  +|||+++.++++|++++++|+++++
T Consensus       336 -----------~~~~l~~~l~~~~gi~v~~g~~f~~-~~--~~Ris~~~~~~~l~~~l~~l~~~l~  387 (389)
T 1o4s_A          336 -----------DDVKFCERLLEEKKVALVPGSAFLK-PG--FVRLSFATSIERLTEALDRIEDFLN  387 (389)
T ss_dssp             -----------CHHHHHHHHHHHHCEECEEGGGGTC-TT--EEEEECCSCHHHHHHHHHHHHHHHT
T ss_pred             -----------CHHHHHHHHHHHCCEEEeCchhcCC-CC--eEEEEEeCCHHHHHHHHHHHHHHHh
Confidence                       2344555666588999999998873 33  9999999888899999999988764

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=100.00  E-value=1.2e-46  Score=387.94  Aligned_cols=375  Identities=20%  Similarity=0.333  Sum_probs=305.1

Q ss_pred             cCcccccC--ccccccchHHHHHHHHHH--hhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccc
Q 009517           61 LNPKVLKC--EYAVRGEIVSIAQRLQQE--LQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSET  136 (533)
Q Consensus        61 ~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~  136 (533)
                      +++++..+  .++.+..++..+.++...  +++         +|||+.|+|+.                      +.   
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~i~l~~~~~~~----------------------~~---   49 (398)
T 3ele_A            4 VNESMYQLGSVRSAIRELFEYGKKRAAIVGKEN---------VYDFSIGNPSI----------------------PA---   49 (398)
T ss_dssp             SCHHHHHHHHCCCHHHHHHHHHHHHHHHHCGGG---------CEECCSCCCCS----------------------CC---
T ss_pred             hhHHHhccccCchhHHHHHHHHHHHHhhcCCCC---------eEEeecCCCCC----------------------CC---
Confidence            45566665  467777788888777664  344         99999998874                      21   


Q ss_pred             cCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCC-
Q 009517          137 QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-  215 (533)
Q Consensus       137 ~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-  215 (533)
                          |+.+.+++.+++.+........|++..|..+||+++++++.+.+|.++++++|++|+|+++++..+++.++ ++| 
T Consensus        50 ----~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al~~~~~~l~-~~g~  124 (398)
T 3ele_A           50 ----PQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALT-SDAY  124 (398)
T ss_dssp             ----CHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC-CSTT
T ss_pred             ----CHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHHHHHHHHHHc-CCCC
Confidence                68899999888876211014679999999999999999999999988899999999999999999999998 899 


Q ss_pred             CeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHH
Q 009517          216 DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAI  295 (533)
Q Consensus       216 d~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i  295 (533)
                      |+|+++.|+|+++...++..|++++.+|++++ +|++|+++|++++++      ++++|++++||||||.+++.+++++|
T Consensus       125 d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~-~~~~d~~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~l  197 (398)
T 3ele_A          125 DEFITIAPYFPEYKVFVNAAGARLVEVPADTE-HFQIDFDALEERINA------HTRGVIINSPNNPSGTVYSEETIKKL  197 (398)
T ss_dssp             CEEEEESSCCTHHHHHHHHTTCEEEEECCCTT-TSSCCHHHHHHTCCT------TEEEEEECSSCTTTCCCCCHHHHHHH
T ss_pred             CEEEEeCCCchhhHHHHHHcCCEEEEEecCCc-CCcCCHHHHHHHhCc------CCCEEEEcCCCCCCCCCCCHHHHHHH
Confidence            99999999999999999999999999999754 789999999999876      79999999999999999999999999


Q ss_pred             HHHHHH------cCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCC
Q 009517          296 VDFCKK------EGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFS  369 (533)
Q Consensus       296 ~~l~~~------~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~  369 (533)
                      +++|++      ||+++|+||+|.++.+++. ......    +.     ..+++++.||||++ |++|+|+||+++   +
T Consensus       198 ~~~~~~~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~----~~-----~~~~i~~~s~sK~~-~~~G~r~G~~~~---~  263 (398)
T 3ele_A          198 SDLLEKKSKEIGRPIFIIADEPYREIVYDGI-KVPFVT----KY-----YDNTLVCYSYSKSL-SLPGERIGYVLV---P  263 (398)
T ss_dssp             HHHHHHHHHHHTSCCEEEEECTTTTCBCTTC-CCCCGG----GT-----CSSEEEEEESTTTS-SCTTTCCEEEEC---C
T ss_pred             HHHHHhhhhccCCCeEEEEeccccccccCCC-CcCChH----hh-----cCCeEEEEehhhcC-CCccceeEEEEE---c
Confidence            999999      9999999999999988663 222211    11     23579999999999 889999999998   6


Q ss_pred             HH------HHHHHHHhhh--ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceE
Q 009517          370 AE------VREQIYKVAS--VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITC  441 (533)
Q Consensus       370 ~~------~~~~l~~~~~--~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~  441 (533)
                      ++      +...+.....  .+++++.+.|.++..+++...               .+++++++++++.+.|+++ |+.+
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---------------~~~~~~~~~~~l~~~L~~~-g~~~  327 (398)
T 3ele_A          264 DEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATG---------------DINAYKENRDLLYEGLTRI-GYHC  327 (398)
T ss_dssp             TTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCCC---------------CHHHHHHHHHHHHHHHHHH-TCCE
T ss_pred             chhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhcCHH---------------HHHHHHHHHHHHHHHHHHc-CCee
Confidence            55      3444443332  356778899998888876432               2456778888999999888 8999


Q ss_pred             ecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHH
Q 009517          442 NKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLT  521 (533)
Q Consensus       442 ~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~  521 (533)
                      +.+++++|+|++++.             .+...++ +.|.++||.+.||..|+. ++  +|||+++.++++|++++++|+
T Consensus       328 ~~~~~~~~~~~~~~~-------------~~~~~~~-~~l~~~gi~v~~g~~~~~-~~--~iRis~~~~~e~i~~~l~~l~  390 (398)
T 3ele_A          328 FKPDGAFYMFVKALE-------------DDSNAFC-EKAKEEDVLIVAADGFGC-PG--WVRISYCVDREMIKHSMPAFE  390 (398)
T ss_dssp             ECCSBSSEEEEECSS-------------SCHHHHH-HHHHTTTEECEESGGGTC-TT--EEEEECCSCHHHHHHHHHHHH
T ss_pred             cCCCeeEEEEEEcCC-------------CCHHHHH-HHHHHCCEEEeCccccCC-CC--eEEEEecCCHHHHHHHHHHHH
Confidence            999999999976541             1234444 456789999999999974 33  999999989999999999999


Q ss_pred             HHHHHHH
Q 009517          522 DFHKNFM  528 (533)
Q Consensus       522 ~~l~~~~  528 (533)
                      +++++++
T Consensus       391 ~~l~~~~  397 (398)
T 3ele_A          391 KIYKKYN  397 (398)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            9988753

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=100.00  E-value=4.4e-47  Score=392.27  Aligned_cols=378  Identities=17%  Similarity=0.226  Sum_probs=303.5

Q ss_pred             CcccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCC
Q 009517           62 NPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFS  141 (533)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p  141 (533)
                      ++++..++++++..+...+.+  ..|++         +|||+.|.|..                      ..       +
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~--~~g~~---------~idl~~g~~~~----------------------~~-------~   62 (404)
T 2o1b_A           23 SNKLANIPDSYFGKTMGRKIE--HGPLP---------LINMAVGIPDG----------------------PT-------P   62 (404)
T ss_dssp             CHHHHTSCCCTTC-------C--CCSSC---------CEECCCCSCSS----------------------CC-------C
T ss_pred             hhHhhhCCchHHHHHHHHHHh--cCCCC---------EEecCCcCCCC----------------------CC-------C
Confidence            445666666665555443332  11222         89999999864                      21       6


Q ss_pred             HHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCC-CCEEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       142 ~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      +.+.+++.+++.+.   ....|++..|..+||+++++++.+.+|.++++ ++|++|+|+++++..+++.++ ++||+|++
T Consensus        63 ~~v~~a~~~~~~~~---~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~-~~gd~Vl~  138 (404)
T 2o1b_A           63 QGIIDHFQKALTIP---ENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVI-NPGDYVLL  138 (404)
T ss_dssp             HHHHHHHHHHTTCH---HHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHHHHHHHHC-CTTCEEEE
T ss_pred             HHHHHHHHHHHhCC---CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHHHHHHHhc-CCCCEEEE
Confidence            78888888877541   14579888899999999999999888987776 799999999999999999998 79999999


Q ss_pred             cCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHH
Q 009517          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (533)
Q Consensus       221 ~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~  300 (533)
                      +.|+|+++...++..|.+++.+++++ ++|.+|+++|++++++      ++++|++++|+||||.+++.+++++|+++|+
T Consensus       139 ~~p~y~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~l~~~l~~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~  211 (404)
T 2o1b_A          139 PDPGYTDYLAGVLLADGKPVPLNLEP-PHYLPDWSKVDSQIID------KTKLIYLTYPNNPTGSTATKEVFDEAIAKFK  211 (404)
T ss_dssp             EESCCSSHHHHHHHTTCEEEEEECCT-TTCCCCGGGSCHHHHH------HEEEEEECSSCTTTCCCCCHHHHHHHHHHHT
T ss_pred             cCCCchhHHHHHHHCCCEEEEeccCc-ccCcCCHHHHHHhhcc------CceEEEEcCCCCCCCccCCHHHHHHHHHHHH
Confidence            99999999999999999999999886 5678999999999976      6999999999999999999999999999999


Q ss_pred             HcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhh
Q 009517          301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA  380 (533)
Q Consensus       301 ~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~  380 (533)
                      ++|++||+||+|.++.+++.  ..++..+.      ....+++++.||||.+ |++|+|+||+++   ++++++.+....
T Consensus       212 ~~~~~li~De~~~~~~~~g~--~~~~~~~~------~~~~~~i~~~s~sK~~-g~~G~r~G~~~~---~~~~~~~l~~~~  279 (404)
T 2o1b_A          212 GTDTKIVHDFAYGAFGFDAK--NPSILASE------NGKDVAIEIYSLSKGY-NMSGFRVGFAVG---NKDMIQALKKYQ  279 (404)
T ss_dssp             TSSCEEEEECTTTTCBSSSC--CCCGGGST------THHHHEEEEEESTTTT-TCGGGCCEEEEE---CHHHHHHHHHHH
T ss_pred             HcCCEEEEEccchhcccCCC--CCChhhcC------CCCCCEEEEEecchhc-cCchhheEeEec---CHHHHHHHHHHH
Confidence            99999999999999888652  23333321      0113578999999999 789999999998   999999988766


Q ss_pred             h-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHH
Q 009517          381 S-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEK  459 (533)
Q Consensus       381 ~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~  459 (533)
                      . .++++++++|.++..+|+..          .+++++++++++++++.+.+.|+++ |+.++.+++++|+|++++  .+
T Consensus       280 ~~~~~~~~~~~~~a~~~~l~~~----------~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~--~~  346 (404)
T 2o1b_A          280 THTNAGMFGALQDAAIYALNHY----------DDFLEEQSNVFKTRRDRFEAMLAKA-DLPFVHAKGGIYVWLETP--PG  346 (404)
T ss_dssp             HHHCCCCCHHHHHHHHHHHHHC----------HHHHHHHHHHHHHHHHHHHHHHHHT-TCCEECCCBSSEEEEECC--TT
T ss_pred             hhccCCCCHHHHHHHHHHHhcC----------HHHHHHHHHHHHHHHHHHHHHHHhc-CCeecCCCcceEEEEeCC--CC
Confidence            5 55788999999998887421          2456778888999999999999998 899989999999997654  11


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHHH
Q 009517          460 AIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~  526 (533)
                               . +...++..+++++||.+.||..|+. .+.++|||+++.++++|++++++|++++++
T Consensus       347 ---------~-~~~~l~~~l~~~~gi~v~~g~~f~~-~~~~~iRis~~~~~e~l~~~l~~l~~~l~~  402 (404)
T 2o1b_A          347 ---------Y-DSEQFEQFLVQEKSILVAPGKPFGE-NGNRYVRISLALDDQKLDEAAIRLTELAYL  402 (404)
T ss_dssp             ---------C-CHHHHHHHHHHHHCEECEESGGGCG-GGTTEEEEECCSCTTHHHHHHHHHHGGGGG
T ss_pred             ---------C-CHHHHHHHHHHHCCEEEeCchhhCc-CCCCeEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence                     1 2345566767678999999999873 334599999988889999999999988754

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=100.00  E-value=1.2e-46  Score=394.51  Aligned_cols=384  Identities=19%  Similarity=0.260  Sum_probs=305.3

Q ss_pred             cCcCcccccCcc-ccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCccccc
Q 009517           59 DSLNPKVLKCEY-AVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQ  137 (533)
Q Consensus        59 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~  137 (533)
                      ..+++.+..+++ .++..+..+........ +++      ++|||+.|+|+.                      +.    
T Consensus        37 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~------~~i~l~~g~~~~----------------------~~----   83 (449)
T 3qgu_A           37 VQRNENFGKLRAGYLFPEIARRRKAHQEKN-PDA------KIISLGIGDTTE----------------------PL----   83 (449)
T ss_dssp             CCCCHHHHHCCSCCHHHHHHHHHHHHHHHC-TTC------CCEECSSCCCCC----------------------CC----
T ss_pred             hhhhHHHHhCCCcchHHHHHHHHHHHHhhC-CCC------CEEEeeCCCCCC----------------------CC----
Confidence            345667777776 35556666666555431 122      299999998774                      22    


Q ss_pred             CCCCHHHHHHHHHHHhcCCC-CCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCC
Q 009517          138 GLFSADSIERAWQILDQIPG-RATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND  216 (533)
Q Consensus       138 ~~~p~~v~~~~~~~~~~~~~-~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd  216 (533)
                         |+.+++++.+++.+... .....|++..|..+||+++++++.  +|+.+++++|++|+|+++++..+ ..++ ++||
T Consensus        84 ---~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~--~g~~~~~~~i~~t~G~~~al~~~-~~l~-~~gd  156 (449)
T 3qgu_A           84 ---PKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFY--GHAGRAADEIFISDGSKCDIARI-QMMF-GSKP  156 (449)
T ss_dssp             ---CHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHH--TTTTCCGGGEEEESCHHHHHHHH-HHHH-CSSS
T ss_pred             ---CHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHH--cCCCCCHHHEEEccCHHHHHHHH-HHHh-CCCC
Confidence               78999999888874310 135689999999999999999997  77778899999999999999998 7777 7999


Q ss_pred             eEEEcCCcCcchHHHHHHhCCe----------EEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccC
Q 009517          217 GILCPIPQYPLYSASIALHGGT----------LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV  286 (533)
Q Consensus       217 ~Vlv~~p~~~~~~~~~~~~g~~----------~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~  286 (533)
                      +|++++|+|+++...+...|++          ++.+++++++++..|++.+           +++++|++++||||||.+
T Consensus       157 ~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~v~l~~p~NPtG~~  225 (449)
T 3qgu_A          157 TVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA-----------KRTDIIFFCSPNNPTGAA  225 (449)
T ss_dssp             CEEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC-----------CCCSEEEEESSCTTTCCC
T ss_pred             EEEEcCCCChhHHHHHHHcCCcccccccccceeEEEecccccCCcCChhHc-----------CCCCEEEEeCCCCCCCCc
Confidence            9999999999999999999999          9999998776777776432           278999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEe
Q 009517          287 LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVT  366 (533)
Q Consensus       287 ~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~  366 (533)
                      ++.+++++|+++|++||+++|+||+|.+|.+++. ...++..+.      .....+|++.||||++ |++|+|+||+++ 
T Consensus       226 ~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~-~~~~~~~~~------~~~~~~i~~~s~sK~~-g~~G~r~G~~~~-  296 (449)
T 3qgu_A          226 ATRAQLTELVNFARKNGSILVYDAAYALYISNPD-CPKTIYEIP------GADEVAIETCSFSKYA-GFTGVRLGWTVV-  296 (449)
T ss_dssp             CCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTT-SCSSGGGST------TGGGTEEEEEECSGGG-TCTTCCCEEEEC-
T ss_pred             CCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCC-CCCCHhhcc------CCCCcEEEEecchhhc-CCccceeEEEec-
Confidence            9999999999999999999999999999988653 233433321      1123578999999999 899999999998 


Q ss_pred             cCCHHHHH--------HHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 009517          367 GFSAEVRE--------QIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLE  437 (533)
Q Consensus       367 ~~~~~~~~--------~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  437 (533)
                        ++++++        .+..... .++++++++|.++..+|++.         ..+++++++++++++++++.+.|+++ 
T Consensus       297 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---------~~~~~~~~~~~~~~~~~~l~~~L~~~-  364 (449)
T 3qgu_A          297 --PKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPE---------GLKEMNAMIKFYKENAQILKTTFTEM-  364 (449)
T ss_dssp             --CTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHH---------HHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             --CHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhc---------CHHHHHHHHHHHHHHHHHHHHHHHHC-
Confidence              777654        4444444 55688999999999988621         12557788899999999999999998 


Q ss_pred             CceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHH
Q 009517          438 GITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIV  517 (533)
Q Consensus       438 g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~  517 (533)
                      |+.+..+++++|+|++++   +          .+...++..+++++||.+.||..|+ ..+.++|||++..++++|++++
T Consensus       365 g~~~~~~~~~~~~~~~~~---~----------~~~~~~~~~l~~~~gI~v~pg~~f~-~~~~~~iRis~~~~~e~i~~~l  430 (449)
T 3qgu_A          365 GFSVYGGDDAPYIWVGFP---G----------KPSWDVFAEILERCNIVTTPGSGYG-PAGEGFVRASAFGSRENILEAV  430 (449)
T ss_dssp             TCCEEESSSSSEEEEECT---T----------SCHHHHHHHHHHHHCEECEEGGGGC-GGGTTEEEEECCSCHHHHHHHH
T ss_pred             CCeeeCCCCeeEEEEECC---C----------CCHHHHHHHHHHHCCEEEecchHhC-CCCCCeEEEEecCCHHHHHHHH
Confidence            999999999999997664   1          1245566777877899999999998 4556699999988999999999


Q ss_pred             HHHHHHHHHHH
Q 009517          518 TRLTDFHKNFM  528 (533)
Q Consensus       518 ~~l~~~l~~~~  528 (533)
                      ++|++++++-.
T Consensus       431 ~~l~~~~~~~~  441 (449)
T 3qgu_A          431 RRFKEAYGKRN  441 (449)
T ss_dssp             HHHHHHHC---
T ss_pred             HHHHHHHHhcC
Confidence            99999987654

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=100.00  E-value=5.8e-47  Score=387.28  Aligned_cols=363  Identities=14%  Similarity=0.188  Sum_probs=302.8

Q ss_pred             HHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCC
Q 009517           79 IAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGR  158 (533)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~  158 (533)
                      ++.+...|+.++++      +|||+.|.+..                      +.       |+.+++++.+++.+    
T Consensus        11 ~~~g~~~~d~~g~~------~idl~~~~~~~----------------------~~-------~~~v~~a~~~~~~~----   51 (377)
T 3fdb_A           11 RARNTMKWTRYGQG------VLPLWVAESDF----------------------ST-------CPAVLQAITDAVQR----   51 (377)
T ss_dssp             HHTCCHHHHSSCTT------SEECCSSCCCS----------------------CC-------CHHHHHHHHHHHHT----
T ss_pred             cCCCCceeeccCCC------eeeecccCCCC----------------------CC-------CHHHHHHHHHHHHc----
Confidence            44555566666665      99999998764                      22       78999999988876    


Q ss_pred             CccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCe
Q 009517          159 ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGT  238 (533)
Q Consensus       159 ~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~  238 (533)
                      ....|++ .| .++|+++++++++.+|.++++++|++|+|+++++..+++.++ ++||+|+++.|+|+++...++..|.+
T Consensus        52 ~~~~y~~-~~-~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~-~~gd~vl~~~~~~~~~~~~~~~~g~~  128 (377)
T 3fdb_A           52 EAFGYQP-DG-SLLSQATAEFYADRYGYQARPEWIFPIPDVVRGLYIAIDHFT-PAQSKVIVPTPAYPPFFHLLSATQRE  128 (377)
T ss_dssp             TCCSSCC-SS-CCHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS-CTTCCEEEEESCCTHHHHHHHHHTCC
T ss_pred             CCCCCCC-CC-HHHHHHHHHHHHHHhCCCCCHHHEEEeCChHHHHHHHHHHhc-CCCCEEEEcCCCcHhHHHHHHHcCCE
Confidence            3567998 87 899999999999999988899999999999999999999998 89999999999999999999999999


Q ss_pred             EEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEcccccccccc
Q 009517          239 LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYV  318 (533)
Q Consensus       239 ~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~  318 (533)
                      ++.++++.+    +|++++++++++      +++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.++
T Consensus       129 ~~~~~~~~~----~d~~~l~~~l~~------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~  198 (377)
T 3fdb_A          129 GIFIDATGG----INLHDVEKGFQA------GARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFD  198 (377)
T ss_dssp             EEEEECTTS----CCHHHHHHHHHT------TCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSS
T ss_pred             EEEccCCCC----CCHHHHHHHhcc------CCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcC
Confidence            999998763    899999999987      6899999999999999999999999999999999999999999999887


Q ss_pred             CCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHH
Q 009517          319 PEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLV  397 (533)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~  397 (533)
                      +.....++..+.       ...+++++.||||.+ |++|+|+||+++  .++++++.+..... .+++++++++.++.++
T Consensus       199 g~~~~~~~~~~~-------~~~~~i~~~s~sK~~-g~~G~r~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  268 (377)
T 3fdb_A          199 GQHTVAAGVSDT-------AASVCITITAPSKAW-NIAGLKCAQIIF--SNPSDAEHWQQLSPVIKDGASTLGLIAAEAA  268 (377)
T ss_dssp             SCCCCGGGSCHH-------HHHHEEEEECSTTTT-TCGGGCCEEEEC--CSHHHHHHHHHSCHHHHCCCCHHHHHHHHHH
T ss_pred             CCCCcccHHHcc-------CCCcEEEEEeChHhc-cCcchhheEEEe--CCHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence            612233332221       123578999999999 889999999876  37889888887665 5678899999998888


Q ss_pred             cCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHH
Q 009517          398 MSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNS-LEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYC  476 (533)
Q Consensus       398 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (533)
                      |+..          .+++++++++++++++.+.+.|++ +||+.++.+++++++|++++..          +.  +..++
T Consensus       269 l~~~----------~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----------~~--~~~~~  326 (377)
T 3fdb_A          269 YRYG----------TDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPMQATYLMWIDFRDT----------TI--EGSPS  326 (377)
T ss_dssp             HHHC----------HHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECCCSBCSEEEEECTTS----------CC--CSCHH
T ss_pred             Hhcc----------HHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCeeEEEEEECccc----------CC--CHHHH
Confidence            7521          245677888999999999999998 7899999999999999766521          11  12345


Q ss_pred             HHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHHH
Q 009517          477 RRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       477 ~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~  526 (533)
                      ..+++++||.+.||..|+. .+.+++||+++.++++|++++++|++++++
T Consensus       327 ~~l~~~~gi~v~~g~~~~~-~~~~~~Ris~~~~~e~i~~~l~~l~~~l~~  375 (377)
T 3fdb_A          327 EFFIEKAKVAMNDGAWFGE-DGTGFCRLNFATSREVLEEAIDRMAKAVSH  375 (377)
T ss_dssp             HHHHHHHCEECEEGGGGCG-GGTTEEEEECCSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhCCEEecCChhccC-CCCCEEEEEeCCCHHHHHHHHHHHHHHHhh
Confidence            6777777999999999984 345599999998889999999999998764

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=100.00  E-value=1.6e-46  Score=388.07  Aligned_cols=360  Identities=20%  Similarity=0.292  Sum_probs=300.0

Q ss_pred             ceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHH
Q 009517           98 EILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA  177 (533)
Q Consensus        98 ~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia  177 (533)
                      .+|||+.|+|..                       .     ..|+.+++++.+++.+.   ....|++..|..+++++++
T Consensus        40 ~~id~~~g~~~~-----------------------~-----~~~~~v~~a~~~~~~~~---~~~~y~~~~g~~~l~~~l~   88 (407)
T 3nra_A           40 RPVDFSHGDVDA-----------------------H-----EPTPGAFDLFSAGVQSG---GVQAYTEYRGDLGIRDLLA   88 (407)
T ss_dssp             CCEETTSCCTTT-----------------------S-----CCCTTHHHHHHHHHHHT---HHHHSCCTTCCHHHHHHHH
T ss_pred             ceeeecCcCCCC-----------------------C-----CCcHHHHHHHHHHHhcC---CCCCcCCCCCCHHHHHHHH
Confidence            489999998871                       1     11788999998888752   2457999999999999999


Q ss_pred             HHHHhhcCCCCCC-CCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCC----CCCCCC
Q 009517          178 AGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDE----ATGWGL  252 (533)
Q Consensus       178 ~~~~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~----~~~~~l  252 (533)
                      +++.+.+|.++++ ++|++|+|+++++..+++.++ ++||+|+++.|+|.++...++..|++++.++++.    +.++++
T Consensus        89 ~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~l~-~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  167 (407)
T 3nra_A           89 PRLAAFTGAPVDARDGLIITPGTQGALFLAVAATV-ARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGL  167 (407)
T ss_dssp             HHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHTTC-CTTCEEEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCB
T ss_pred             HHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhC-CCCCEEEEcCCcccchHHHHHHcCCEEEEeecccccccCcCCCc
Confidence            9999988987766 799999999999999999998 8999999999999999999999999999999842    347789


Q ss_pred             CHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhh
Q 009517          253 ETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRS  332 (533)
Q Consensus       253 d~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~  332 (533)
                      |+++|++++++      ++++|++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. .+.++..+...
T Consensus       168 d~~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~-~~~~~~~~~~~  240 (407)
T 3nra_A          168 DLTGLEEAFKA------GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGA-SYTHLRAEAAV  240 (407)
T ss_dssp             CHHHHHHHHHT------TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTC-CCCCGGGCTTS
T ss_pred             CHHHHHHHHhh------CCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCC-CCCChhhcCcc
Confidence            99999999987      789999999999999999999999999999999999999999999988653 33443332100


Q ss_pred             cCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHH
Q 009517          333 MGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESY  411 (533)
Q Consensus       333 ~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~  411 (533)
                           ...+++++.||||++ |++|+|+||+++   ++++++.+..... .++++++++|.++..+|+...         
T Consensus       241 -----~~~~~i~~~s~sK~~-g~~G~r~G~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~---------  302 (407)
T 3nra_A          241 -----DAENVVTIMGPSKTE-SLSGYRLGVAFG---SRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAP---------  302 (407)
T ss_dssp             -----CGGGEEEEECSSSTT-CCGGGCCEEEEE---CHHHHHHHHHHHHHHTSSSCHHHHGGGGGTTCCCT---------
T ss_pred             -----cCCcEEEEeCccccc-CCCeeeEEEEEc---CHHHHHHHHHHHhhhccCCChHHHHHHHHHHhccc---------
Confidence                 133579999999999 889999999998   9999999887765 567788899988888886432         


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCC
Q 009517          412 CAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGS  491 (533)
Q Consensus       412 ~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~  491 (533)
                       +++++++++++++++.+.+.|++++++.++.+++++|+|++++...           .+...++..+++++||.+.||.
T Consensus       303 -~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~~~gi~v~~g~  370 (407)
T 3nra_A          303 -GWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKLA-----------VAPAEFVKILRLQAGVVVTPGT  370 (407)
T ss_dssp             -THHHHHHHHHHHHHHHHHHHHHTSTTCBCCCCSBSSEECCBCCCBS-----------SCHHHHHHHHHHHHCEECEEGG
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCeeEEEEEeCCCCC-----------CCHHHHHHHHHHhCCEEEeCch
Confidence             2345667778889999999999988999999999999997665210           1244556666677899999999


Q ss_pred             CCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHHHH
Q 009517          492 GFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       492 ~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~  527 (533)
                      .|+ ..+.++|||+++.++++|++++++|+++++++
T Consensus       371 ~~~-~~~~~~iRis~~~~~~~i~~~~~~l~~~~~~~  405 (407)
T 3nra_A          371 EFS-PHTADSVRLNFSQDHEAAVAAARRIVTLVERY  405 (407)
T ss_dssp             GTC-TTCTTBEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred             hhC-CCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHh
Confidence            998 45566999999888999999999999998865

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=100.00  E-value=8.3e-47  Score=392.25  Aligned_cols=338  Identities=15%  Similarity=0.152  Sum_probs=273.3

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCC--CEEEcCChHHHHHHHHH--HhccCCCC
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN--DIFLTDGASPAVHMMMQ--LLIRSEND  216 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~--~i~~t~G~~~al~~~~~--~l~~~~gd  216 (533)
                      ++.+.+++.+.+...   ....|++..|..+||+++++++.+.++..++++  +|++|+|+++|+..+++  .++ ++||
T Consensus        69 ~~~v~~a~~~~~~~~---~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~~~~~-~~gd  144 (420)
T 4f4e_A           69 LRAVRDAEKARVEAG---LPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRTL-NPKA  144 (420)
T ss_dssp             CHHHHHHHHHHHHTC---CCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHH-CTTC
T ss_pred             cHHHHHHHHHHhccC---CCCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEECCccHHHHHHHHHHHHHh-CCCC
Confidence            588999988888752   256899999999999999999986655444678  89999999999999954  456 7999


Q ss_pred             eEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHH
Q 009517          217 GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIV  296 (533)
Q Consensus       217 ~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~  296 (533)
                      +|++++|+|.+|...++..|++++.+++.++.++++|++.+++.+++.   .++++++++++||||||.+++.+++++|+
T Consensus       145 ~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~v~i~~p~NPtG~~~~~~~l~~i~  221 (420)
T 4f4e_A          145 KVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGY---EPGTIVVLHACCHNPTGVDLNDAQWAQVV  221 (420)
T ss_dssp             CEEEEESCCHHHHHHHHHTTCCEEEEECEETTTTEECHHHHHHHHTTC---CTTCEEEEECSSCTTTCCCCCHHHHHHHH
T ss_pred             EEEEeCCCcHhHHHHHHHcCCeEEEeeeeccccCccCHHHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHH
Confidence            999999999999999999999999999954457899999999999732   12688999999999999999999999999


Q ss_pred             HHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHH-
Q 009517          297 DFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQ-  375 (533)
Q Consensus       297 ~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~-  375 (533)
                      ++|++||+++|+||+|.+|.+++.....++..+. +.     ..++|++.||||++ |++|+|+||+++...++++++. 
T Consensus       222 ~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~-~~-----~~~~i~~~S~SK~~-~~~G~RiG~~~~~~~~~~~~~~~  294 (420)
T 4f4e_A          222 EVVKARRLVPFLDIAYQGFGESIEADAAAVRLFA-AA-----NLNVFVSSSFSKSF-SLYGERVGALSIITDSKDEAARV  294 (420)
T ss_dssp             HHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHH-HT-----TCCEEEEEECTTTT-TCGGGCEEEEEEECSSHHHHHHH
T ss_pred             HHHHHCCcEEEEccccccccCCcchhhHHHHHHH-hc-----CCCEEEEEeCCccC-cCcCCCcEEEEEEcCCHHHHHHH
Confidence            9999999999999999999986533344444432 21     23579999999999 8999999999754445666544 


Q ss_pred             ---HHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCceEecCCcee
Q 009517          376 ---IYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL---EGITCNKAEGAM  448 (533)
Q Consensus       376 ---l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~g~~~~~~~gg~  448 (533)
                         +..... .+.+++.++|.++..+|.+.    ...+.|.+++++++++++++++.+.+.|+++   +|+.+..|++|+
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~  370 (420)
T 4f4e_A          295 LSQLKRVIRTNYSNPPTHGGAIVAAVLASP----ELRASWVQELGEMRDRIRAMRNGLVERLKAAGIERDFSFINAQRGM  370 (420)
T ss_dssp             HHHHHHHHHTTTSSCCSHHHHHHHHHHHCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHSCSS
T ss_pred             HHHHHHHHhcccCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeECCCccE
Confidence               333322 45677899999998888642    1223356778899999999999999999987   478888999999


Q ss_pred             EEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec-CCcCcHHHHHHHHHHHH
Q 009517          449 YLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-PQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~~~~l~~~l  524 (533)
                      |+|++++                . ..+..+++++||++.|+           .|||++ .++++|++++++|++++
T Consensus       371 ~~~~~~~----------------~-~~~~~~l~~~gI~v~~~-----------~Ris~~~~~~~~i~~~~~~l~~~l  419 (420)
T 4f4e_A          371 FSYSGLT----------------S-AQVDRLREEFGIYAVST-----------GRICVAALNTRNLDVVANAIAAVL  419 (420)
T ss_dssp             EEECCCC----------------H-HHHHHHHHHHCEECCTT-----------SEEEGGGCCTTTHHHHHHHHHHHH
T ss_pred             EEEeCCC----------------H-HHHHHHHHhCCEEecCC-----------CeEEEecCCHHHHHHHHHHHHHHh
Confidence            9996553                1 22557788899999973           299998 58889999999999876

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=2.1e-46  Score=383.29  Aligned_cols=366  Identities=20%  Similarity=0.261  Sum_probs=298.0

Q ss_pred             ccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHH
Q 009517           71 AVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQ  150 (533)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~  150 (533)
                      +++..+.....+....|++         +|||+.|.|..                      +.       |+.+.+++.+
T Consensus         8 ~~~~~~~~~~~~~~~~g~~---------~idl~~~~~~~----------------------~~-------~~~v~~a~~~   49 (376)
T 2dou_A            8 SVFLVVDEAKRKARERGVG---------LIDLSIGSTDL----------------------PP-------PEAPLKALAE   49 (376)
T ss_dssp             HHHHHHHHHHHHHHHTTCC---------CEECSSCCCCC----------------------CC-------CHHHHHHHHH
T ss_pred             chHHHHHHHHHHhhccCCC---------EEeccCCCCCC----------------------CC-------CHHHHHHHHH
Confidence            4555555555555554444         99999999864                      21       6888888888


Q ss_pred             HHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchH
Q 009517          151 ILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS  229 (533)
Q Consensus       151 ~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~  229 (533)
                      ++.+.   ....|++..|..+||+++++++.+.+|.+++++ +|++|+|+++++..+++.+. ++||+|+++.|+|+++.
T Consensus        50 ~~~~~---~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~l~-~~gd~vl~~~p~y~~~~  125 (376)
T 2dou_A           50 ALNDP---TTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAHLLLALT-EPEDLLLLPEVAYPSYF  125 (376)
T ss_dssp             HTTCG---GGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHHHHHHHHHHC-CTTCEEEEESSCCHHHH
T ss_pred             HHhCC---CcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhc-CCCCEEEECCCCcHhHH
Confidence            87541   256788877899999999999998889877777 99999999999999999998 79999999999999999


Q ss_pred             HHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEc
Q 009517          230 ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLAD  309 (533)
Q Consensus       230 ~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~D  309 (533)
                      ..++..|.+++.+++  +++|.+|++++++++++      ++++|++++||||||.+++.+++++|+++|++||+++|+|
T Consensus       126 ~~~~~~g~~~~~~~~--~~~~~~d~~~l~~~l~~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~D  197 (376)
T 2dou_A          126 GAARVASLRTFLIPL--REDGLADLKAVPEGVWR------EAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHD  197 (376)
T ss_dssp             HHHHHTTCEEEEECB--CTTSSBCGGGSCHHHHH------HEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHcCCEEEEeeC--CCCCCCCHHHHHHhhcc------CceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEE
Confidence            999999999999998  34678999999999976      6999999999999999999999999999999999999999


Q ss_pred             cccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCCh
Q 009517          310 EVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNI  388 (533)
Q Consensus       310 e~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~  388 (533)
                      |+|.++.+++.  ..++..+.      +...+++++.||||.+ |++|+|+||+++   ++++++.+..... .++++++
T Consensus       198 e~~~~~~~~~~--~~~~~~~~------~~~~~~i~~~s~sK~~-~~~G~r~G~~~~---~~~~~~~l~~~~~~~~~~~~~  265 (376)
T 2dou_A          198 NPYVDQVYEGE--APSPLALP------GAKERVVELFSLSKSY-NLAGFRLGFALG---SEEALARLERVKGVIDFNQYA  265 (376)
T ss_dssp             CTTGGGBSSSC--CCCGGGST------TGGGTEEEEEEHHHHH-TCGGGCCEEEEE---CHHHHHHHHHHHHHHCCCSCH
T ss_pred             ccchhcccCCC--CCChhhcC------CCCCcEEEEecchhhc-CChhheeEEEec---CHHHHHHHHHHHHhcccCCCH
Confidence            99999888652  22322221      1123578999999999 789999999998   9999999887665 5567899


Q ss_pred             HHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcC
Q 009517          389 SGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEK  468 (533)
Q Consensus       389 ~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~  468 (533)
                      ++|.++..+|+..          .+++++++++++++++.+.+.|+++  +.+..+.+++|+|++++  .+         
T Consensus       266 ~~~~a~~~~l~~~----------~~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~--~~---------  322 (376)
T 2dou_A          266 GVLRMGVEALKTP----------KEVVRGYARVYRERALGMAEALKGV--LSLLPPRATMYLWGRLP--EG---------  322 (376)
T ss_dssp             HHHHHHHHHHTSC----------HHHHHHHHHHHHHHHHHHHHHHTTT--SEECCCCBSSEEEEECC--TT---------
T ss_pred             HHHHHHHHHHhCc----------HHHHHHHHHHHHHHHHHHHHHHHHh--cCccCCCeeEEEEEECC--CC---------
Confidence            9999999988631          2456778888999999999999887  78888899999997654  11         


Q ss_pred             CCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHH
Q 009517          469 TVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       469 ~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l  524 (533)
                      . +...++..+++ +||.+.||..|+. .+.++|||+++.++++|++++++|++++
T Consensus       323 ~-~~~~~~~~l~~-~gi~v~~g~~f~~-~~~~~~Ris~~~~~~~i~~~l~~l~~~l  375 (376)
T 2dou_A          323 V-DDLEFGLRLVE-RGVALAPGRGFGP-GGKGFVRIALVRPLEELLEAAKRIREAL  375 (376)
T ss_dssp             C-CHHHHHHHHHH-TTEECEEGGGGCG-GGTTEEEEECCSCHHHHHHHHHHHHHTC
T ss_pred             C-CHHHHHHHHHH-CCEEEcCchhhCC-CCCCeEEEEecCCHHHHHHHHHHHHHHh
Confidence            1 23445555555 5999999999873 3445999999888889999999998764

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=100.00  E-value=6.6e-47  Score=391.42  Aligned_cols=368  Identities=15%  Similarity=0.213  Sum_probs=298.8

Q ss_pred             eeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHH
Q 009517           99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA  178 (533)
Q Consensus        99 ~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~  178 (533)
                      +|+|+.|+|++                      +.       |+.+++++.+++...   ....|++..|..+||+++++
T Consensus        25 ~i~l~~~~~~~----------------------~~-------~~~v~~a~~~~~~~~---~~~~y~~~~g~~~l~~~la~   72 (410)
T 3e2y_A           25 VVNLGQGFPDI----------------------SP-------PSYVKEELSKAAFID---NMNQYTRGFGHPALVKALSC   72 (410)
T ss_dssp             SEECSSCCCCS----------------------CC-------CHHHHHHHHHHHTCG---GGGSCCCTTCCHHHHHHHHH
T ss_pred             eEEecCCCCCC----------------------CC-------CHHHHHHHHHHHhCc---cccCCCCCCChHHHHHHHHH
Confidence            89999999875                      22       788999998888752   25689999999999999999


Q ss_pred             HHHhhcCCCCCC-CCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCC---------CC
Q 009517          179 GIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDE---------AT  248 (533)
Q Consensus       179 ~~~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~---------~~  248 (533)
                      ++++.+|.++++ ++|++|+|+++++..+++.++ ++||+|+++.|+|+.+...+...|.+++.++++.         ..
T Consensus        73 ~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~-~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~  151 (410)
T 3e2y_A           73 LYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGLV-DPGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSS  151 (410)
T ss_dssp             HHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHC-CTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBGG
T ss_pred             HHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhc-CCCCEEEEeCCCchhhHHHHHHcCCEEEEEecccccccccccccc
Confidence            999999988888 899999999999999999998 8999999999999999999999999999999873         24


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHH
Q 009517          249 GWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKK  328 (533)
Q Consensus       249 ~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~  328 (533)
                      +|.+|++++++++++      ++++|++++||||||.+++.+++++|+++|++||+++|+||+|.++.|++. ...++..
T Consensus       152 ~~~~d~~~l~~~~~~------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~  224 (410)
T 3e2y_A          152 DWTFDPRELESKFSS------KTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGH-THVKIAT  224 (410)
T ss_dssp             GEECCHHHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC-CCCCGGG
T ss_pred             CCcCCHHHHHhhcCC------CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCC-CCCCHHH
Confidence            567899999998865      799999999999999999999999999999999999999999999998764 3344433


Q ss_pred             HHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChh
Q 009517          329 VSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDES  407 (533)
Q Consensus       329 ~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~  407 (533)
                      +.      ....+++++.||||.+ |++|+|+||+++   ++++++.+..... .+++++++.|.++..+|++...   .
T Consensus       225 ~~------~~~~~~i~~~S~sK~~-g~~G~r~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~---~  291 (410)
T 3e2y_A          225 LP------GMWERTITIGSAGKTF-SVTGWKLGWSIG---PAHLIKHLQTVQQNSFYTCATPLQAALAEAFWIDIK---R  291 (410)
T ss_dssp             ST------TCGGGEEEEEEHHHHS-SCGGGCCEEEEC---CHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHT---T
T ss_pred             cC------CccCeEEEEecchhhc-CCCCceEEEEEE---CHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhc---c
Confidence            31      1224689999999999 889999999998   9999999887765 5788899999999888752000   0


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCC-CHHHHHHHHhcCCCChHHHHHHHHHccceE
Q 009517          408 YESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQL-PEKAIKAAEAEKTVPDAFYCRRLLNATGIV  486 (533)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~  486 (533)
                      +..+.+++++++++++++++++.+.|+++ |+.+..|++++|+|+++.. +... +. ...+..++..++..+++++||.
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~ll~~~gv~  368 (410)
T 3e2y_A          292 MDDPECYFNSLPKELEVKRDRMVRLLNSV-GLKPIVPDGGYFIIADVSSLGADL-SD-MNSDEPYDYKFVKWMTKHKKLT  368 (410)
T ss_dssp             TTSTTSHHHHHHHHHHHHHHHHHHHHHTT-TCEEEBCSBSSEEEEECGGGCCCC-TT-CCSSCCHHHHHHHHHHHHHSEE
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCccEEEEEEchhhhccc-cc-ccccccCHHHHHHHHHHHcCEE
Confidence            00012446778888999999999999998 9999999999999977641 1100 00 0000011346667788889999


Q ss_pred             EEcCCCCCCCC----CCceEEEEecCCcCcHHHHHHHHHH
Q 009517          487 LVPGSGFGQVP----GTWHFRCTILPQEDKIPAIVTRLTD  522 (533)
Q Consensus       487 v~pg~~f~~~~----g~~~iRis~~~~~e~i~~~~~~l~~  522 (533)
                      +.||+.|+...    +.++|||+++.++++|++++++|++
T Consensus       369 v~~g~~f~~~~~~~~~~~~iRis~~~~~e~l~~~l~~l~~  408 (410)
T 3e2y_A          369 AIPVSAFCDSKSKPHFEKLVRFCFIKKDSTLDAAEEIFRA  408 (410)
T ss_dssp             CEEGGGGSCTTTHHHHTTEEEEECCCCHHHHHHHHHHHHT
T ss_pred             EeCchhhCCCCCCCCCCCEEEEEEcCCHHHHHHHHHHHHh
Confidence            99999996421    3469999999999999999999875

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=100.00  E-value=5.5e-46  Score=385.73  Aligned_cols=383  Identities=16%  Similarity=0.201  Sum_probs=297.8

Q ss_pred             ccccccchHHHHHHHHHH--hhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHH
Q 009517           69 EYAVRGEIVSIAQRLQQE--LQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIE  146 (533)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~  146 (533)
                      .++++..+..++.+....  +.+         +|+|++|.|...+.                        +...|+.+.+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~g~~~---------~i~l~~g~~~~~~~------------------------~~~~~~~v~~   63 (418)
T 3rq1_A           17 LKDVIFVTAGQAQADAKENGREN---------VVNGTLGAIHDEEG------------------------NLVFLKTVKE   63 (418)
T ss_dssp             CCCHHHHHHHHHHHHHHHHCGGG---------CEECCSSCCBCTTS------------------------CBCCCHHHHH
T ss_pred             CCchHHHHHHHHHhhhhhhcCCC---------eEECCCCcccCCCC------------------------CccccHHHHH
Confidence            344444566666666665  555         99999999843111                        1112566666


Q ss_pred             HHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCc
Q 009517          147 RAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYP  226 (533)
Q Consensus       147 ~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~  226 (533)
                      ++.+....    ....|++..|..+||+++++++.+.++.+ .+++|++|+|+++|+..+++.++ ++||+|++++|+|.
T Consensus        64 a~~~~~~~----~~~~y~~~~g~~~lr~~ia~~~~~~~~~~-~~~~i~~t~g~~~al~~~~~~l~-~~gd~Vl~~~p~~~  137 (418)
T 3rq1_A           64 EYLSLSDS----EHVGYAPIAGIPDFLCAAEKECFGNFRPE-GHIRSIATAGGTGGIHHLIHNYT-EPGDEVLTADWYWG  137 (418)
T ss_dssp             HHHTCCHH----HHHSCCCTTCCHHHHHHHHHHHHGGGCCS-SEEEEEEESHHHHHHHHHHHHHS-CTTCEEEEESSCCT
T ss_pred             HHHHhccc----ccCCCCCCCChHHHHHHHHHHHhcccCcc-ccccEEECCchHHHHHHHHHHhc-CCCCEEEECCCCch
Confidence            65443332    25679999999999999999998766533 13499999999999999999998 89999999999999


Q ss_pred             chHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCee-EEEEeCC-CCCCccCCCHHHHHHHHHHHH----
Q 009517          227 LYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVR-ALVVINP-GNPTGQVLAEENQRAIVDFCK----  300 (533)
Q Consensus       227 ~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~-~iil~~p-~NPtG~~~s~~~l~~i~~l~~----  300 (533)
                      +|...+...|++++.++++++ +|++|++.|++++++....  +++ ++++++| |||||.+++.+++++|+++|+    
T Consensus       138 ~~~~~~~~~g~~~~~v~~~~~-~~~~d~~~l~~~l~~~~~~--~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~  214 (418)
T 3rq1_A          138 AYRVICSDTGRTLVTYSLFDE-HNNFNHEAFQNRVNELAAK--QTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVA  214 (418)
T ss_dssp             HHHHHHHHTTCEEEEECSBCT-TSSBCHHHHHHHHHHHHHH--CSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHcCCEEEEEeeeCC-CCCcCHHHHHHHHHHhhcc--CCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhh
Confidence            999999999999999999755 4899999999999863111  344 7888899 999999999999999999999    


Q ss_pred             --HcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHH
Q 009517          301 --KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYK  378 (533)
Q Consensus       301 --~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~  378 (533)
                        +||+++|+||+|.+|.+++. ...++.....++   .++..+|++.||||++ |++|+|+||+++...++++++.+..
T Consensus       215 ~~~~~~~li~De~y~~~~~~~~-~~~~~~~~~~~~---~~~~~~i~~~S~sK~~-~~~G~r~G~~~~~~~~~~~~~~~~~  289 (418)
T 3rq1_A          215 IGRNNVIIGIDVAYLDYSGEKD-EVRAFFNKFSHL---PKEILTCVCYSLSKGF-TMYGQRVGAMIGISDDEEIADEFFE  289 (418)
T ss_dssp             TSSCEEEEEEECTTGGGSSCHH-HHHGGGGGGTTC---CTTEEEEEEEESTTTT-TCCSSCCEEEEEEESSHHHHHHHHH
T ss_pred             ccCCCeEEEEecccccccCChH-HHHHHHHHHHhc---CCCceEEEEEeCCCCC-cCcCCcceEEEEEeCCHHHHHHHHH
Confidence              89999999999999887542 112222222222   2343468999999999 8999999999864347889988877


Q ss_pred             hhh-----ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecc
Q 009517          379 VAS-----VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPR  453 (533)
Q Consensus       379 ~~~-----~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~  453 (533)
                      ...     ..++++.++|.++..+|++.    ..++.|.++++.++++++++++++.+.|+++ |+.++.++++||+|++
T Consensus       290 ~~~~~~~~~~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~  364 (418)
T 3rq1_A          290 VNKSTSRATWSNICRPAMRTMANIVADP----AKFKEYEAERNCYYQLIRDRADIFKQEAAQV-GLPMLPYRGGFFITIP  364 (418)
T ss_dssp             HHHHHHHHHTSSCCHHHHHHHHHHHTCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCCCCCCSSSEEEEE
T ss_pred             HHHHHHhhccCCCchHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCceEEEEcC
Confidence            643     22468899999999998752    2334566777788899999999999999998 9999999999999965


Q ss_pred             cCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec-CCcCcHHHHHHHHHHHHHHH
Q 009517          454 IQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~~~~l~~~l~~~  527 (533)
                      +.               +...++ +.|.++||.+.||.        ++||||++ .++++|++++++|+++++++
T Consensus       365 ~~---------------~~~~~~-~~l~~~gi~v~~g~--------~~iRis~~~~~~~~i~~~~~~l~~~l~~~  415 (418)
T 3rq1_A          365 TD---------------SANAIC-EELKKEHIYVIALA--------NGIRIAACGIPKCQMTGLAEKIYNAMKSL  415 (418)
T ss_dssp             CT---------------THHHHH-HHHHHTTEECEECS--------SEEEEEGGGSCHHHHTTHHHHHHHHHHHT
T ss_pred             CC---------------CHHHHH-HHHHhCCEEEecCC--------CCeEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence            43               233444 45678999999962        28999997 79999999999999998765

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=100.00  E-value=1.7e-45  Score=375.71  Aligned_cols=366  Identities=24%  Similarity=0.378  Sum_probs=303.9

Q ss_pred             CcccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCC
Q 009517           62 NPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFS  141 (533)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p  141 (533)
                      ++++..++++++..+...+.+....+++         +|+|+.|.|..                      +.       |
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~---------~i~l~~~~~~~----------------------~~-------~   44 (370)
T 2z61_A            3 SKRLLNFESFEVMDILALAQKLESEGKK---------VIHLEIGEPDF----------------------NT-------P   44 (370)
T ss_dssp             CHHHHHCCCCTTHHHHHHHHHHHHTTCC---------CEECCCCSCSS----------------------CC-------C
T ss_pred             hhhhhhccccHHHHHHHHHHHHHhcCCC---------EEEccCCCCCC----------------------CC-------C
Confidence            4566777888888888888777765555         99999999863                      21       6


Q ss_pred             HHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEc
Q 009517          142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCP  221 (533)
Q Consensus       142 ~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~  221 (533)
                      +.+++++.+.+..    ....|++..|..+||++++++++..+|.++++++|++|+|+++++..+++.++ ++||+|+++
T Consensus        45 ~~v~~a~~~~~~~----~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~-~~gd~vl~~  119 (370)
T 2z61_A           45 KPIVDEGIKSLKE----GKTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFALSSII-DDGDEVLIQ  119 (370)
T ss_dssp             HHHHHHHHHHHHT----TCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHHHHHHHC-CTTCEEEEE
T ss_pred             HHHHHHHHHHHHc----CccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHHHHHHhc-CCCCEEEEe
Confidence            8889988888875    24579988899999999999999988988889999999999999999999998 899999999


Q ss_pred             CCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHH
Q 009517          222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK  301 (533)
Q Consensus       222 ~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~  301 (533)
                      +|+|+++...++..|.+++.++        +|+++|++++++      ++++|++++|+||||.+++.+    |+++|++
T Consensus       120 ~p~~~~~~~~~~~~g~~~~~v~--------~d~~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~----l~~~~~~  181 (370)
T 2z61_A          120 NPCYPCYKNFIRFLGAKPVFCD--------FTVESLEEALSD------KTKAIIINSPSNPLGEVIDRE----IYEFAYE  181 (370)
T ss_dssp             SSCCTHHHHHHHHTTCEEEEEC--------SSHHHHHHHCCS------SEEEEEEESSCTTTCCCCCHH----HHHHHHH
T ss_pred             CCCchhHHHHHHHcCCEEEEeC--------CCHHHHHHhccc------CceEEEEcCCCCCcCcccCHH----HHHHHHH
Confidence            9999999999999999999887        589999998865      789999999999999999966    9999999


Q ss_pred             cCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh
Q 009517          302 EGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS  381 (533)
Q Consensus       302 ~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~  381 (533)
                      ||+++|+||+|.++.+++.  ..++..+ .     ....+++++.||||.+ |++|+|+||+++   ++++++.+.....
T Consensus       182 ~~~~li~De~~~~~~~~g~--~~~~~~~-~-----~~~~~~i~~~s~sK~~-~~~G~r~G~~~~---~~~~~~~~~~~~~  249 (370)
T 2z61_A          182 NIPYIISDEIYNGLVYEGK--CYSAIEF-D-----ENLEKTILINGFSKLY-AMTGWRIGYVIS---NDEIIEAILKLQQ  249 (370)
T ss_dssp             HCSEEEEECTTTTCBSSSC--CCCGGGT-C-----TTCSSEEEEEESTTTT-TCGGGCCEEEEC---CHHHHHHHHHHHH
T ss_pred             cCCEEEEEcchhhcccCCC--CcCHHHc-c-----CCCCcEEEEecChhcc-CCccceEEEEEE---CHHHHHHHHHHHh
Confidence            9999999999999888652  2333332 0     1123579999999999 789999999998   8899999887765


Q ss_pred             -ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHH
Q 009517          382 -VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKA  460 (533)
Q Consensus       382 -~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~  460 (533)
                       .++++++++|.++..+|+.       .  ..+++++++++++++++++.+.|+++ |+.++.+++++|+|++++.    
T Consensus       250 ~~~~~~~~~~~~a~~~~l~~-------~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~----  315 (370)
T 2z61_A          250 NLFISAPTISQYAALKAFEK-------E--TEREINSMIKEFDRRRRLVLKYVKDF-GWEVNNPIGAYYVFPNIGE----  315 (370)
T ss_dssp             HHTSSSCHHHHHHHGGGGSH-------H--HHHHHHHHHHHHHHHHHHHHHHHHHT-TCBCCCCCBTTEECCBCSS----
T ss_pred             hcccCCCHHHHHHHHHHHhc-------c--CHHHHHHHHHHHHHHHHHHHHHHHHc-CCeecCCCcceEEEEecCC----
Confidence             5578899999998888751       0  13456778889999999999999998 8888889999999976541    


Q ss_pred             HHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHH
Q 009517          461 IKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~  525 (533)
                                +...++..+++++||.+.||..|+. .+.+++||+++.++++|++++++|+++++
T Consensus       316 ----------~~~~~~~~l~~~~gi~v~~g~~f~~-~~~~~~Ri~~~~~~~~i~~~~~~l~~~l~  369 (370)
T 2z61_A          316 ----------DGREFAYKLLKEKFVALTPGIGFGS-KGKNYIRISYANSYENIKEGLERIKEFLN  369 (370)
T ss_dssp             ----------CHHHHHHHHHHHHCEECEEGGGGCG-GGSSBEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred             ----------CHHHHHHHHHHhCCEEEeCchhhCC-CCCCEEEEEEeCCHHHHHHHHHHHHHHHh
Confidence                      2344555666578999999999873 33459999999888999999999998764

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=100.00  E-value=2.6e-46  Score=382.39  Aligned_cols=367  Identities=17%  Similarity=0.194  Sum_probs=297.0

Q ss_pred             CccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHH
Q 009517           68 CEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIER  147 (533)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~  147 (533)
                      ++++++..+....+++...| +         +|||+.|.+..                      +.       |+.++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~g-~---------~i~l~~~~~~~----------------------~~-------~~~v~~a   44 (376)
T 3ezs_A            4 FEPYPFERLRALLKEITPKK-R---------GLDLGIGEPQF----------------------ET-------PKFIQDA   44 (376)
T ss_dssp             CCCCHHHHHHHHHTTCCCSS-C---------CCBCSSCCCCS----------------------CC-------CHHHHHH
T ss_pred             CCcchHHHHHHHHHhhhccC-C---------EEEeCCCCCCC----------------------CC-------CHHHHHH
Confidence            34555555555544443333 3         99999999764                      22       7888888


Q ss_pred             HHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCC--CCeEEEcCCcC
Q 009517          148 AWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSE--NDGILCPIPQY  225 (533)
Q Consensus       148 ~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~--gd~Vlv~~p~~  225 (533)
                      +.+.+.     ....|++..|..+||+++++++.+.+|.++++++|++|+|+++++..+++.++ ++  ||+|+++.|+|
T Consensus        45 ~~~~~~-----~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~~~~~~-~~~~gd~vl~~~p~~  118 (376)
T 3ezs_A           45 LKNHTH-----SLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFVL-FDYQNPTIAYPNPFY  118 (376)
T ss_dssp             HHTTGG-----GGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHHHHHHT-TTCSSCEEEEEESCC
T ss_pred             HHHhhh-----hcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHHHHHHc-CCCCCCEEEEecCCc
Confidence            887773     26789999999999999999999988987789999999999999999999998 78  99999999999


Q ss_pred             cchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCE
Q 009517          226 PLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLV  305 (533)
Q Consensus       226 ~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~  305 (533)
                      +++...++..|.+++.++++++.++.+   ++++++.+      ++++|++++||||||.+++.+++++|+++|++||++
T Consensus       119 ~~~~~~~~~~g~~~~~~~~~~~~~~~~---~l~~~~~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~  189 (376)
T 3ezs_A          119 QIYEGAAKFIKAKSLLMPLTKENDFTP---SLNEKELQ------EVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFI  189 (376)
T ss_dssp             THHHHHHHHTTCEEEEEECCGGGTSCC---CCCHHHHH------HCSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCE
T ss_pred             HhHHHHHHHcCCEEEEcccCCCCCcch---hHHhhhcc------CCCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcE
Confidence            999999999999999999987654443   67777776      689999999999999999999999999999999999


Q ss_pred             EEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccc
Q 009517          306 LLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNL  384 (533)
Q Consensus       306 lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~  384 (533)
                      +|+||+|.++.+++  ...++......+.. +...+++++.||||++ |++|+|+||+++   ++++++.+..... .++
T Consensus       190 li~De~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~-g~~G~r~G~~~~---~~~~~~~~~~~~~~~~~  262 (376)
T 3ezs_A          190 LINDECYSEIYENT--PPPSLLEACMLAGN-EAFKNVLVIHSLSKRS-SAPGLRSGFIAG---DSRLLEKYKAFRAYLGY  262 (376)
T ss_dssp             EEEECTTTTCBSSS--CCCCHHHHHHHTTC-TTCTTEEEEEESTTTT-TCGGGCCEEEEE---CHHHHHHHHHHHTTTCC
T ss_pred             EEEEccchhhccCC--CCCCHHHccccccc-cccCcEEEEecchhcc-CCccceeEEEee---CHHHHHHHHHHHhhhcC
Confidence            99999999998866  24444443221100 0223578999999999 889999999998   9999999988765 567


Q ss_pred             cCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHH
Q 009517          385 CSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAA  464 (533)
Q Consensus       385 ~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~  464 (533)
                      ++++++|.++..+|+..           +++++++++++++++.+.+.|+   ++.  .+.+++|+|++++         
T Consensus       263 ~~~~~~~~a~~~~l~~~-----------~~~~~~~~~~~~~~~~l~~~l~---~~~--~~~~~~~~~~~~~---------  317 (376)
T 3ezs_A          263 TSANAIQKASEAAWLDD-----------RHAEFFRNIYANNLKLARKIFK---NTL--IYPYSFYVYLPVQ---------  317 (376)
T ss_dssp             CCCHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHHHHHHHHST---TCC--CCSBSSEEEEECS---------
T ss_pred             CCChHHHHHHHHHHhCc-----------HHHHHHHHHHHHHHHHHHHHhc---CCC--CCCcceEEEEECC---------
Confidence            88999999999888642           3457788889999999999987   554  7788999997654         


Q ss_pred             HhcCCCChHHHHHHHHHccceEEEcCCCCCC-CCCCceEEEEecCCcCcHHHHHHHHHHHHHH
Q 009517          465 EAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ-VPGTWHFRCTILPQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       465 ~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~-~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~  526 (533)
                            +...++..+++++||.+.||..|+. ..+.++|||+++.++++|++++++|++++++
T Consensus       318 ------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l~~  374 (376)
T 3ezs_A          318 ------NGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVYDTPLLEKPLEIIETYREN  374 (376)
T ss_dssp             ------CHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCSCHHHHHHHHHHHHHHHCC
T ss_pred             ------CHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence                  1344555666658999999999974 2345699999988999999999999998764

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=100.00  E-value=4.2e-45  Score=377.60  Aligned_cols=393  Identities=20%  Similarity=0.321  Sum_probs=307.7

Q ss_pred             CcccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCC
Q 009517           62 NPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFS  141 (533)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p  141 (533)
                      ++++..+.++++..+...+.++...|++         +|||+.|.|+..+                     .      .+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~---------~idl~~g~~~~~~---------------------~------~~   51 (407)
T 2zc0_A            8 AGRANWIKGSALADVMKKASELQKKGVK---------LISLAAGDPDPEL---------------------I------PR   51 (407)
T ss_dssp             CGGGGGCCCCHHHHHHHHHHHHHHSSCC---------CEECCSCCCCTTT---------------------S------CH
T ss_pred             hhhhccCCchHHHHHHHhhhcccCCCCc---------eEeCCCCCCCchh---------------------C------CH
Confidence            4455566666666666666544332334         8999999987411                     0      14


Q ss_pred             HHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEc
Q 009517          142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCP  221 (533)
Q Consensus       142 ~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~  221 (533)
                      +.+.+++.+++.+... ... |++..|..+||+++++++.+.+|.++++++|++|+|+++|+..+++.++ ++||+|+++
T Consensus        52 ~~v~~a~~~~~~~~~~-~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~-~~gd~vl~~  128 (407)
T 2zc0_A           52 AVLGEIAKEVLEKEPK-SVM-YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLI-DPGDVVITE  128 (407)
T ss_dssp             HHHHHHHHHHHHHCGG-GGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEE
T ss_pred             HHHHHHHHHHHhhccc-ccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHHHHHHHhc-CCCCEEEEe
Confidence            6777888888765321 245 9988899999999999998888877888999999999999999999998 799999999


Q ss_pred             CCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEE-EeCCCCCCccCCCHHHHHHHHHHHH
Q 009517          222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALV-VINPGNPTGQVLAEENQRAIVDFCK  300 (533)
Q Consensus       222 ~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~ii-l~~p~NPtG~~~s~~~l~~i~~l~~  300 (533)
                      .|+|+++...++..|++++.++++++   ++|+++|+++++.....+.++++|+ +++|+||||.+++.+++++|+++|+
T Consensus       129 ~p~~~~~~~~~~~~g~~~~~v~~~~~---~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~  205 (407)
T 2zc0_A          129 NPSYINTLLAFEQLGAKIEGVPVDND---GMRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIAS  205 (407)
T ss_dssp             ESCCHHHHHHHHTTTCEEEEEEEETT---EECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHcCCEEEEcccCCC---CCCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHH
Confidence            99999999999999999999998753   5899999999983222233688875 6699999999999999999999999


Q ss_pred             HcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhh
Q 009517          301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA  380 (533)
Q Consensus       301 ~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~  380 (533)
                      +||+++|+||+|.++.+++. +..++..+       ++..+++++.||||++ | +|+|+||+++   ++++++.+....
T Consensus       206 ~~~~~li~De~~~~~~~~~~-~~~~~~~~-------~~~~~~i~~~s~sK~~-~-~G~r~G~~~~---~~~~~~~~~~~~  272 (407)
T 2zc0_A          206 KYDLLIIEDTAYNFMRYEGG-DIVPLKAL-------DNEGRVIVAGTLSKVL-G-TGFRIGWIIA---EGEILKKVLMQK  272 (407)
T ss_dssp             HHTCEEEEECTTTTSBSSCS-SCCCGGGG-------CSSCCEEEEEESTTTT-C-TTSCCEEEEC---CHHHHHHHHHHH
T ss_pred             HcCCEEEEECCCcccccCCC-CCCChhhc-------CCCCCEEEEccccccc-C-CCcceEEEec---CHHHHHHHHHHH
Confidence            99999999999999888653 33344333       2333679999999999 7 8999999998   899999888766


Q ss_pred             h-ccccCChHHHHHHHHHcCCCCCCChhHHHHH-HHHHHHHHHHHHHHHHHHHHHhc-CCCceEecCCceeEEecccCCC
Q 009517          381 S-VNLCSNISGQILASLVMSPPKVGDESYESYC-AERDGILSSLARRAKTLEDAFNS-LEGITCNKAEGAMYLFPRIQLP  457 (533)
Q Consensus       381 ~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~gg~~~~~~~~~~  457 (533)
                      . .+++++++.|.++..+|+..        .+. +++++++++++++++++.+.|++ ++++.++.|.+++|+|++++  
T Consensus       273 ~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~--  342 (407)
T 2zc0_A          273 QPIDFCAPAISQYIALEYLKRG--------YFEKYHLEGALLGYKEKRDIMLKALENHLPNAEFTKPIAGMFVMFFLP--  342 (407)
T ss_dssp             TTTTSSSCHHHHHHHHHHHHTT--------HHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTSCBCCCSBSSEEEEECS--
T ss_pred             HhhcCCCCHHHHHHHHHHHHcC--------CchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEecCCCcEEEEEEcC--
Confidence            5 55677999999998888632        122 44567788889999999999987 57888888889999997654  


Q ss_pred             HHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCC-CCCceEEEEec-CCcCcHHHHHHHHHHHHHHHHH
Q 009517          458 EKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQV-PGTWHFRCTIL-PQEDKIPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~-~g~~~iRis~~-~~~e~i~~~~~~l~~~l~~~~~  529 (533)
                      .+         . +...++..+++++||.+.||..|+.. .+.++|||+++ .+++++++++++|+++++++..
T Consensus       343 ~~---------~-~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~~~  406 (407)
T 2zc0_A          343 EG---------A-DGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRPSKEEIPIGIKKLAKLYKEKFG  406 (407)
T ss_dssp             TT---------C-CHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSSCTTHHHHHHHHHHHHHHHHC-
T ss_pred             CC---------C-CHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            11         1 23455556655559999999988642 23459999998 4789999999999999887643

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=100.00  E-value=4e-46  Score=385.94  Aligned_cols=358  Identities=21%  Similarity=0.316  Sum_probs=294.8

Q ss_pred             eeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHH
Q 009517           99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA  178 (533)
Q Consensus        99 ~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~  178 (533)
                      +|+|+.|.|..                      +.       |+.+.+++.+++.+    ....|++..|..+||+++++
T Consensus        27 ~i~l~~~~~~~----------------------~~-------~~~v~~a~~~~~~~----~~~~y~~~~g~~~l~~~la~   73 (411)
T 2o0r_A           27 AVNLGQGFPDE----------------------DG-------PPKMLQAAQDAIAG----GVNQYPPGPGSAPLRRAIAA   73 (411)
T ss_dssp             CEESSCSSCSS----------------------CC-------CHHHHHHHHHHHHT----TCCSCCCTTCCHHHHHHHHH
T ss_pred             eeeccCcCCCC----------------------CC-------CHHHHHHHHHHHhc----CCCCCCCCCCCHHHHHHHHH
Confidence            89999998864                      21       68899999888875    24579998899999999999


Q ss_pred             HHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCC-CCCCCCHHH
Q 009517          179 GIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEA-TGWGLETSE  256 (533)
Q Consensus       179 ~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~-~~~~ld~~~  256 (533)
                      ++.+.+|.+++++ +|++|+|+++|+..+++.++ ++||+|+++.|+|+++...+...|.+++.++++.+ .+|.+|+++
T Consensus        74 ~~~~~~g~~~~~~~~v~~t~g~~~al~~~~~~~~-~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~  152 (411)
T 2o0r_A           74 QRRRHFGVDYDPETEVLVTVGATEAIAAAVLGLV-EPGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADA  152 (411)
T ss_dssp             HHHHHHCCCCCTTTSEEEEEHHHHHHHHHHHHHC-CTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHH
T ss_pred             HHHHHcCCCCCCCceEEEeCCHHHHHHHHHHHhc-CCCCEEEEeCCCcHhHHHHHHHcCCEEEEeeccccccCCCCCHHH
Confidence            9998889888888 99999999999999999998 89999999999999999999999999999998753 356799999


Q ss_pred             HHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCC
Q 009517          257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG  336 (533)
Q Consensus       257 l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~  336 (533)
                      |++++++      ++++|++++|+||||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+.      
T Consensus       153 l~~~l~~------~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~------  219 (411)
T 2o0r_A          153 LRRAVTP------RTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHA-RHLPLAGFD------  219 (411)
T ss_dssp             HHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC-CCCCGGGST------
T ss_pred             HHHhhcc------CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC-CCcChhhcc------
Confidence            9999875      799999999999999999999999999999999999999999999988653 233433321      


Q ss_pred             CCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHH
Q 009517          337 EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAER  415 (533)
Q Consensus       337 ~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~  415 (533)
                      .....++++.||||.+ |++|+|+||+++   ++++++.+..... .+++++++.|.++..+|+..          .+++
T Consensus       220 ~~~~~~i~~~s~sK~~-~~~G~r~G~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~----------~~~~  285 (411)
T 2o0r_A          220 GMAERTITISSAAKMF-NCTGWKIGWACG---PAELIAGVRAAKQYLSYVGGAPFQPAVALALDTE----------DAWV  285 (411)
T ss_dssp             TTGGGEEEEEEHHHHT-TCTTTCEEEEEC---CHHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHC----------HHHH
T ss_pred             CCCCCEEEEeechhhc-CCccceEEEEee---CHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCC----------hHHH
Confidence            1123578999999998 789999999998   8999998877654 56777888888888887421          2446


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCC
Q 009517          416 DGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ  495 (533)
Q Consensus       416 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~  495 (533)
                      ++++++++++++++.+.|+++ |+.+..+++++|+|++++  ..        +..+...++..+++++||.+.||..|..
T Consensus       286 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~--~~--------~~~~~~~~~~~l~~~~gi~v~~g~~f~~  354 (411)
T 2o0r_A          286 AALRNSLRARRDRLAAGLTEI-GFAVHDSYGTYFLCADPR--PL--------GYDDSTEFCAALPEKVGVAAIPMSAFCD  354 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-TCEECCCCBSSEEEEECG--GG--------TCCCHHHHHHHHHHHHSEECEEGGGGSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHc-CCEecCCCeeEEEEEecC--CC--------CCCCHHHHHHHHHHhCCEEEcChhhhCC
Confidence            778888999999999999988 899988999999997654  10        0012445566677778999999998842


Q ss_pred             CC----------CCceEEEEecCCcCcHHHHHHHHHHHHHHHH
Q 009517          496 VP----------GTWHFRCTILPQEDKIPAIVTRLTDFHKNFM  528 (533)
Q Consensus       496 ~~----------g~~~iRis~~~~~e~i~~~~~~l~~~l~~~~  528 (533)
                      ..          +.++|||+++.++++|++++++|++++++..
T Consensus       355 ~~~~~~~~~~~~~~~~iRis~~~~~e~i~~~~~~l~~~~~~~~  397 (411)
T 2o0r_A          355 PAAGQASQQADVWNHLVRFTFCKRDDTLDEAIRRLSVLAERPA  397 (411)
T ss_dssp             CC--------CCGGGCEEEECCSCHHHHHHHHHHHGGGGC---
T ss_pred             CccccccccccCCCCeEEEEecCCHHHHHHHHHHHHHHHhccC
Confidence            22          4569999999888899999999999877654

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=100.00  E-value=1e-45  Score=379.75  Aligned_cols=356  Identities=18%  Similarity=0.209  Sum_probs=297.7

Q ss_pred             eeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHH
Q 009517           99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA  178 (533)
Q Consensus        99 ~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~  178 (533)
                      +|||+.|+|..                      +.       |+.+++++.+++.+    ....|++.  ..++++++++
T Consensus        29 ~i~~~~~~~~~----------------------~~-------~~~v~~a~~~~~~~----~~~~y~~~--~~~l~~~la~   73 (391)
T 3dzz_A           29 ELPMWIAEMDF----------------------KI-------APEIMASMEEKLKV----AAFGYESV--PAEYYKAVAD   73 (391)
T ss_dssp             CEECCSSCCSS----------------------CC-------CHHHHHHHHHHHTT----CCCCCBCC--CHHHHHHHHH
T ss_pred             ceeccccCCCC----------------------CC-------CHHHHHHHHHHHhc----CcCCCCCC--CHHHHHHHHH
Confidence            99999998875                      22       78999999998876    35678776  6899999999


Q ss_pred             HHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecC-CCCCCCCCHHHH
Q 009517          179 GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLD-EATGWGLETSEV  257 (533)
Q Consensus       179 ~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~-~~~~~~ld~~~l  257 (533)
                      ++.+.+|.++++++|++|+|+++++..+++.++ ++||+|+++.|+|+++...++..|.+++.++++ .+++|.+|+++|
T Consensus        74 ~l~~~~g~~~~~~~i~~~~g~~~a~~~~~~~l~-~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l  152 (391)
T 3dzz_A           74 WEEIEHRARPKEDWCVFASGVVPAISAMVRQFT-SPGDQILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNWADL  152 (391)
T ss_dssp             HHHHHHSCCCCGGGEEEESCHHHHHHHHHHHHS-CTTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHH
T ss_pred             HHHHHhCCCCCHHHEEECCCHHHHHHHHHHHhC-CCCCeEEECCCCcHHHHHHHHHcCCEEEEeeeeecCCceeecHHHH
Confidence            999999988889999999999999999999998 899999999999999999999999999999986 344567999999


Q ss_pred             HHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCC
Q 009517          258 KKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE  337 (533)
Q Consensus       258 ~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~  337 (533)
                      ++++++.     ++++|++++|+||||.++|.+++++|+++|++||+++|+||+|.++.+.+. ...++..+...    .
T Consensus       153 ~~~l~~~-----~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~----~  222 (391)
T 3dzz_A          153 EEKLATP-----SVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDE-DITPAFTVDWD----A  222 (391)
T ss_dssp             HHHHTST-----TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC-CCCCGGGSCTT----T
T ss_pred             HHHHhcc-----CceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCC-CceehhhcCcc----c
Confidence            9999732     799999999999999999999999999999999999999999999988663 33444333111    1


Q ss_pred             CCceEEEEecCCccCCCCCCCeeEEEEEecCC-HHHHHHHHHhhh--ccccCChHHHHHHHHHcCCCCCCChhHHHHHHH
Q 009517          338 KDISLVSFQSVSKGYYGECGKRGGYMEVTGFS-AEVREQIYKVAS--VNLCSNISGQILASLVMSPPKVGDESYESYCAE  414 (533)
Q Consensus       338 ~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~-~~~~~~l~~~~~--~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~  414 (533)
                      + .+++++.||||.+ |++|+|+||+++   + +++++.+.....  .+++++++++.++..+|...          .++
T Consensus       223 ~-d~~i~~~s~sK~~-g~~G~r~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~----------~~~  287 (391)
T 3dzz_A          223 K-NWVVSLISPSKTF-NLAALHAACAII---PNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEEG----------HDW  287 (391)
T ss_dssp             G-GGEEEEECSHHHH-TCTTTCCEEEEC---CSHHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHC----------HHH
T ss_pred             c-CcEEEEEeChhhc-cccchhheEEEE---CCHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcc----------HHH
Confidence            2 3689999999999 889999999997   6 899998887653  45688999998888877421          244


Q ss_pred             HHHHHHHHHHHHHHHHHHHhc-CCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCC
Q 009517          415 RDGILSSLARRAKTLEDAFNS-LEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGF  493 (533)
Q Consensus       415 ~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f  493 (533)
                      +++++++++++++++.+.|++ +||+.+..+.+++++|++++..          +. +...++..+++++||.+.||..|
T Consensus       288 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-~~~~~~~~l~~~~gi~v~~g~~~  356 (391)
T 3dzz_A          288 LRELKQVLRDNFAYAREFLAKEVPEVKVLDSNASYLAWVDISAL----------GM-NAEDFCKYLREKTGLIISAGNGY  356 (391)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCTTSEECCCCBSSEEEEECGGG----------CS-CHHHHHHHHHHHHCEECEESGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCcEEeccCceEEEEEehhhc----------CC-CHHHHHHHHHHhCCEEEeCchhh
Confidence            677888899999999999998 7999999999999999765411          11 24455566666899999999999


Q ss_pred             CCCCCCceEEEEecCCcCcHHHHHHHHHHHHHHH
Q 009517          494 GQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       494 ~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~  527 (533)
                      + ..+.+++||+++.++++|++++++|+++++++
T Consensus       357 ~-~~~~~~iRis~~~~~~~i~~~l~~l~~~l~~~  389 (391)
T 3dzz_A          357 R-GNGHEFVRINLACPKELVIDGMQRLKQGVLNL  389 (391)
T ss_dssp             C-TTGGGEEEEECCSCHHHHHHHHHHHHHHHHTC
T ss_pred             C-CCCCCEEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence            8 34566999999988899999999999988754

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=100.00  E-value=2.9e-45  Score=376.19  Aligned_cols=351  Identities=22%  Similarity=0.319  Sum_probs=292.1

Q ss_pred             eeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHH
Q 009517           99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA  178 (533)
Q Consensus        99 ~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~  178 (533)
                      +|+|+.|.|+.                      +.       |+.+.+++.+.+..    ....|++..|..+||+++++
T Consensus        32 ~i~l~~~~~~~----------------------~~-------~~~v~~a~~~~~~~----~~~~y~~~~g~~~l~~~la~   78 (386)
T 1u08_A           32 AINLSQGFPDF----------------------DG-------PRYLQERLAHHVAQ----GANQYAPMTGVQALREAIAQ   78 (386)
T ss_dssp             CEECCCSSCSS----------------------CC-------CHHHHHHHHHHHHT----TCCSCCCTTCCHHHHHHHHH
T ss_pred             eEEecCCCCCC----------------------CC-------CHHHHHHHHHHHHh----hccCCCCCCCCHHHHHHHHH
Confidence            89999999864                      21       68889998888865    24579988899999999999


Q ss_pred             HHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHH
Q 009517          179 GIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEV  257 (533)
Q Consensus       179 ~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l  257 (533)
                      ++.+.+|.+++++ +|++|+|+++++..+++.++ ++||+|++++|+|+++...++..|.+++.++++.+ +|++|+++|
T Consensus        79 ~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~-~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~-~~~~d~~~l  156 (386)
T 1u08_A           79 KTERLYGYQPDADSDITVTAGATEALYAAITALV-RNGDEVICFDPSYDSYAPAIALSGGIVKRMALQPP-HFRVDWQEF  156 (386)
T ss_dssp             HHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHC-CTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCTT-TCCCCHHHH
T ss_pred             HHHHHhCCCCCCCCCEEEcCChHHHHHHHHHHhC-CCCCEEEEeCCCchhHHHHHHHcCCEEEEeecCcc-cCcCCHHHH
Confidence            9998888888888 99999999999999999998 79999999999999999999999999999998754 578999999


Q ss_pred             HHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCC
Q 009517          258 KKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE  337 (533)
Q Consensus       258 ~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~  337 (533)
                      ++++++      ++++|++++|+||||.++|.+++++|+++|++||+++|+||+|.++.|++. ...++..+...     
T Consensus       157 ~~~l~~------~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~-----  224 (386)
T 1u08_A          157 AALLSE------RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQ-GHASVLAHPQL-----  224 (386)
T ss_dssp             HHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSS-CCCCGGGSHHH-----
T ss_pred             HHhhcc------cCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCC-CCcChhcccCc-----
Confidence            999865      799999999999999999999999999999999999999999999988653 23344332111     


Q ss_pred             CCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHH
Q 009517          338 KDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERD  416 (533)
Q Consensus       338 ~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~  416 (533)
                       ...++++.||||.+ |++|+|+||+++   ++++++.+..... .+++++++.|.++..+|+..          .++++
T Consensus       225 -~~~~i~~~s~sK~~-~~~G~r~G~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~----------~~~~~  289 (386)
T 1u08_A          225 -RERAVAVSSFGKTY-HMTGWKVGYCVA---PAPISAEIRKVHQYLTFSVNTPAQLALADMLRAE----------PEHYL  289 (386)
T ss_dssp             -HTTEEEEEEHHHHT-TCGGGCCEEEEC---CHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHC----------THHHH
T ss_pred             -cCcEEEEecchhhc-CCcccceEEEEc---CHHHHHHHHHHHHhhccCCChHHHHHHHHHHhCC----------cHHHH
Confidence             12468899999999 789999999998   8999998887664 56788889998888887521          24467


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCC
Q 009517          417 GILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQV  496 (533)
Q Consensus       417 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~  496 (533)
                      +++++++++++++.+.|+++ |+.+..+++++|+|++++..          +..+...++..+++++||.+.||..|+..
T Consensus       290 ~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~----------~~~~~~~~~~~l~~~~gi~v~~g~~f~~~  358 (386)
T 1u08_A          290 ALPDFYRQKRDILVNALNES-RLEILPCEGTYFLLVDYSAV----------STLDDVEFCQWLTQEHGVAAIPLSVFCAD  358 (386)
T ss_dssp             THHHHHHHHHHHHHHHTTSS-SCEECCCCBSSEEEEECTTT----------CCSCHHHHHHHHHHHSCEECEEGGGGCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHC-CCeecCCCceEEEEEecCCC----------CCCCHHHHHHHHHHhCCEEEeCchHhCCC
Confidence            78889999999999999998 89998899999999766411          00124455666777889999999988632


Q ss_pred             -CCCceEEEEecCCcCcHHHHHHHHHH
Q 009517          497 -PGTWHFRCTILPQEDKIPAIVTRLTD  522 (533)
Q Consensus       497 -~g~~~iRis~~~~~e~i~~~~~~l~~  522 (533)
                       .+.++|||+++.++++|++++++|++
T Consensus       359 ~~~~~~iRis~~~~~~~i~~~~~~l~~  385 (386)
T 1u08_A          359 PFPHKLIRLCFAKKESTLLAAAERLRQ  385 (386)
T ss_dssp             CCCSCEEEEECCSCHHHHHHHHHHHTT
T ss_pred             CCCCCEEEEEEcCCHHHHHHHHHHHhh
Confidence             24559999999888899999998864

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=100.00  E-value=5.8e-46  Score=383.39  Aligned_cols=382  Identities=15%  Similarity=0.167  Sum_probs=296.4

Q ss_pred             cccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCC-cCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHH
Q 009517           65 VLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNP-QSLGQQPITFFREVLALCDHPSILDRSETQGLFSAD  143 (533)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p-~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~  143 (533)
                      +..++..+..+++..+..+...+.        +++|+|++|.| +..+. |                        .+.+.
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~~~--------~~~i~l~~g~~~d~~~~-~------------------------~~~~~   50 (401)
T 7aat_A            4 WSHVEMGPPDPILGVTEAFKRDTN--------SKKMNLGVGAYRDDNGK-P------------------------YVLNC   50 (401)
T ss_dssp             STTCCCCCCCHHHHHHHHHHHCCC--------TTCEECCCCSCCCTTSC-C------------------------CCCHH
T ss_pred             hhcCCCCCCChhHHHHHHHhhCCC--------CCceeeeeeeEECCCCC-E------------------------echHH
Confidence            445555666667788877776432        23899999998 53111 1                        11346


Q ss_pred             HHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEE--cCChHHHHHHHHHHhc--cCCCCeEE
Q 009517          144 SIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFL--TDGASPAVHMMMQLLI--RSENDGIL  219 (533)
Q Consensus       144 v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~--t~G~~~al~~~~~~l~--~~~gd~Vl  219 (533)
                      +.+++.+.+...   ....|++..|.++||+++++++.+.+|..+++++|++  |+|+++++..+++.+.  .++||+|+
T Consensus        51 v~~a~~~~~~~~---~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vl  127 (401)
T 7aat_A           51 VRKAEAMIAAKK---MDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVY  127 (401)
T ss_dssp             HHHHHHHHHHTT---CCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred             HHHHHHHhcccc---cccCCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEecCcchHHHHHHHHHHHHhccCCCEEE
Confidence            666666655531   3678999999999999999999988887777999977  9999999998876652  16899999


Q ss_pred             EcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHH
Q 009517          220 CPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC  299 (533)
Q Consensus       220 v~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~  299 (533)
                      +++|+|.+|...++..|.+++.++++.+.++++|++.+++.+++.   .+++++|++++||||||.+++.+++++|+++|
T Consensus       128 v~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~  204 (401)
T 7aat_A          128 LPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKI---PEKSIILLHACAHNPTGVDPRQEQWKELASVV  204 (401)
T ss_dssp             EEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHH
T ss_pred             EcCCCchhHHHHHHHcCCeeEeeeeeccccCccCHHHHHHHHHhC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHH
Confidence            999999999999999999999999876567899999998888652   23788999999999999999999999999999


Q ss_pred             HHcCCEEEEccccccccccCCC-CcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHH----HHH
Q 009517          300 KKEGLVLLADEVYQENVYVPEK-KFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAE----VRE  374 (533)
Q Consensus       300 ~~~~~~lI~De~y~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~----~~~  374 (533)
                      ++||+++|+||+|+++.+++.. ...++..+. +     ...++|++.||||+| |++|+|+||+++...+++    ++.
T Consensus       205 ~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~-~-----~~~~~i~~~S~sK~~-~~~G~RiG~l~~~~~~~~~~~~~~~  277 (401)
T 7aat_A          205 KKRNLLAYFDMAYQGFASGDINRDAWALRHFI-E-----QGIDVVLSQSYAKNM-GLYGERAGAFTVICRDAEEAKRVES  277 (401)
T ss_dssp             HHTTCEEEEEESCTTTTTSCHHHHTHHHHHHH-H-----TTCCCEEEEECTTTS-CCGGGCEEEEEEECSSHHHHHHHHH
T ss_pred             HhCCcEEEEccccccccCCCccccHHHHHHHH-h-----cCCcEEEEecCCccc-ccccCceEEEEEEeCCHHHHHHHHH
Confidence            9999999999999998885421 122232221 2     223579999999999 899999999987544666    455


Q ss_pred             HHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCceEecCCceeEE
Q 009517          375 QIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL---EGITCNKAEGAMYL  450 (533)
Q Consensus       375 ~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~g~~~~~~~gg~~~  450 (533)
                      .+..... .+.+++..+|.++..+++++    .....|.+++++++++++++++++.+.|+++   +++.+..|+++||+
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~  353 (401)
T 7aat_A          278 QLKILIRPMYSNPPMNGARIASLILNTP----ELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFC  353 (401)
T ss_dssp             HHHHHHHHHHSSCCHHHHHHHHHHHHCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEE
T ss_pred             HHHHHHHhccCCCChHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceecCCcceEE
Confidence            5555544 55677788888888777642    2334456778889999999999999999987   24778889999999


Q ss_pred             ecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec-CCcCcHHHHHHHHHHHH
Q 009517          451 FPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-PQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~~~~l~~~l  524 (533)
                      |++++                 ..++..+++++||++.|+           +|||++ .++++|++++++|++++
T Consensus       354 ~~~~~-----------------~~~~~~ll~~~gi~v~~~-----------~Ris~~~~~~~~i~~~~~~l~~~~  400 (401)
T 7aat_A          354 FTGLK-----------------PEQVERLTKEFSIYMTKD-----------GRISVAGVASSNVGYLAHAIHQVT  400 (401)
T ss_dssp             ECCCC-----------------HHHHHHHHHHHCEECCTT-----------CEEEGGGCCTTTHHHHHHHHHHHH
T ss_pred             ecCCC-----------------HHHHHHHHHhCCEeccCC-----------CeEEeccCChhhHHHHHHHHHHHh
Confidence            96543                 122457778899999863           599997 77788999999999876

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=100.00  E-value=1.1e-45  Score=384.67  Aligned_cols=370  Identities=15%  Similarity=0.231  Sum_probs=297.4

Q ss_pred             eeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHH
Q 009517           99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA  178 (533)
Q Consensus        99 ~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~  178 (533)
                      +|||+.|.|+.                      +.       |+.+++++.+++..... ....|++..|..+||+++++
T Consensus        39 ~i~l~~~~~~~----------------------~~-------~~~v~~a~~~~~~~~~~-~~~~y~~~~g~~~l~~~la~   88 (429)
T 1yiz_A           39 PLNLGQGFPDY----------------------HA-------PKYALNALAAAANSPDP-LANQYTRGFGHPRLVQALSK   88 (429)
T ss_dssp             CEECCSSSCSS----------------------CC-------CHHHHHHHHHHHTCSCG-GGGSCCCSSCCHHHHHHHHH
T ss_pred             EEEecCCCCCC----------------------CC-------CHHHHHHHHHHHhcccc-CccCCCCCCCcHHHHHHHHH
Confidence            89999999864                      21       68899998888865321 24679988899999999999


Q ss_pred             HHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCC--------C
Q 009517          179 GIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEAT--------G  249 (533)
Q Consensus       179 ~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~--------~  249 (533)
                      ++.+.+|.+++++ +|++|+|+++++..+++.++ ++||+|+++.|+|+++...++..|.+++.++++.+.        +
T Consensus        89 ~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~-~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  167 (429)
T 1yiz_A           89 LYSQLVDRTINPMTEVLVTVGAYEALYATIQGHV-DEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSAD  167 (429)
T ss_dssp             HHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHC-CTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCSSSSEEGGG
T ss_pred             HHHHHhCCCCCCcCCEEEecChHHHHHHHHHHhc-CCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCcccccccccccC
Confidence            9998888878888 99999999999999999998 799999999999999999999999999999988653        5


Q ss_pred             CCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHH
Q 009517          250 WGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKV  329 (533)
Q Consensus       250 ~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~  329 (533)
                      |++|++.|++++++      ++++|++++|+||||.++|++++++|+++|++||+++|+||+|.++.|++. ...++..+
T Consensus       168 ~~~d~~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~  240 (429)
T 1yiz_A          168 WVLDNNELEALFNE------KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPF-EHIRICTL  240 (429)
T ss_dssp             CBCCHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTS-CCCCGGGS
T ss_pred             cccCHHHHHHHhcc------CceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCC-CCcChhhc
Confidence            78999999999865      799999999999999999999999999999999999999999999988653 33343332


Q ss_pred             HhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCC-----CCC
Q 009517          330 SRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSP-----PKV  403 (533)
Q Consensus       330 ~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~-----~~~  403 (533)
                       .     .....++++.||||.+ |++|+|+||+++   ++++++.+..... .+++++++.|.++..+|+.     .. 
T Consensus       241 -~-----~~~~~~~~~~s~sK~~-~~~G~r~G~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~-  309 (429)
T 1yiz_A          241 -P-----GMWERTITIGSAGKTF-SLTGWKIGWAYG---PEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKS-  309 (429)
T ss_dssp             -T-----TTGGGEEEEEEHHHHH-TCGGGCCEEEES---CHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTS-
T ss_pred             -c-----CCcCceEEEecchhcc-CCCCcceEEEEe---CHHHHHHHHHHHhhcccCCChHHHHHHHHHHhcccccccc-
Confidence             1     1223578999999998 789999999998   8999998887654 5688899999998888853     21 


Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHcc
Q 009517          404 GDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNAT  483 (533)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  483 (533)
                             +.+++++++++++++++++.+.|+++ |+.++.+++|+|+|++++......+.....+..+...++..+++++
T Consensus       310 -------~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  381 (429)
T 1yiz_A          310 -------PECYFNSISGELMAKRDYMASFLAEV-GMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSV  381 (429)
T ss_dssp             -------TTSHHHHHHHHHHHHHHHHHHHHHHH-TCEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHT
T ss_pred             -------hHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhC
Confidence                   12346778888999999999999988 8998889999999977652100000000000012345566677789


Q ss_pred             ceEEEcCCCCCCCC----CCceEEEEecCCcCcHHHHHHHHHHHHH
Q 009517          484 GIVLVPGSGFGQVP----GTWHFRCTILPQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       484 gV~v~pg~~f~~~~----g~~~iRis~~~~~e~i~~~~~~l~~~l~  525 (533)
                      ||.+.||..|+...    +.++|||+++.++++|++++++|+++++
T Consensus       382 gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~i~~~l~~l~~~l~  427 (429)
T 1yiz_A          382 GLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENLQKAAEILRKWKG  427 (429)
T ss_dssp             SEECBCGGGGSCGGGGGGTTTEEEEECCSCHHHHHHHHHHHHHHSC
T ss_pred             CEEEeCchHhCCCcccCCCCCeEEEEecCCHHHHHHHHHHHHHhcc
Confidence            99999998886321    2459999999889999999999998764

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=100.00  E-value=2.1e-45  Score=380.36  Aligned_cols=382  Identities=25%  Similarity=0.351  Sum_probs=314.6

Q ss_pred             ccCcCcccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCccccc
Q 009517           58 VDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQ  137 (533)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~  137 (533)
                      +.-.++++...+++++..+...+.+....|++         +|+|+.|.|..                      +.    
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---------~i~l~~~~~~~----------------------~~----   57 (409)
T 2gb3_A           13 MDVFSDRVLLTEESPIRKLVPFAEMAKKRGVR---------IHHLNIGQPDL----------------------KT----   57 (409)
T ss_dssp             ---CCHHHHSCCCCTTGGGHHHHHHHHHTTCE---------EEECSSCCCCS----------------------CC----
T ss_pred             HHHHHHHhhcCCccHHHHHHHHHHHHHhcCCC---------EEeccCCCCCC----------------------CC----
Confidence            34557788888888888898888888776666         99999999863                      21    


Q ss_pred             CCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCe
Q 009517          138 GLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDG  217 (533)
Q Consensus       138 ~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~  217 (533)
                         |+.+++++ +++..    ....|++..|..+||++++++++..+|.++++++|++|+|+++|+..+++.+. ++||+
T Consensus        58 ---~~~v~~a~-~~l~~----~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~-~~gd~  128 (409)
T 2gb3_A           58 ---PEVFFERI-YENKP----EVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIA-NPGDE  128 (409)
T ss_dssp             ---CTHHHHHH-HHTCC----SSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHC-CTTCE
T ss_pred             ---CHHHHHHH-HHHhc----CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHHHHHHHhC-CCCCE
Confidence               67788888 77754    24579988899999999999999988988888999999999999999999998 79999


Q ss_pred             EEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHH
Q 009517          218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD  297 (533)
Q Consensus       218 Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~  297 (533)
                      |+++.|+|+++...++..|.+++.++++++++|.+ +++|++++++      ++++|++++|+||||.+++.+++++|++
T Consensus       129 Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~  201 (409)
T 2gb3_A          129 ILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAI-PQNLESFINE------RTKGIVLSNPCNPTGVVYGKDEMRYLVE  201 (409)
T ss_dssp             EEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCC-CTTGGGGCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             EEEcCCCchhHHHHHHHcCCEEEEeccCCCCCCcc-HHHHHHhhCc------CCeEEEECCCCCCCCCCcCHHHHHHHHH
Confidence            99999999999999999999999999876446666 8888888865      7999999999999999999999999999


Q ss_pred             HHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCH-HHHHHH
Q 009517          298 FCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSA-EVREQI  376 (533)
Q Consensus       298 l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~-~~~~~l  376 (533)
                      +|++||+++|+||+|.++.+++.  ..++   ..++     ...++++.||||.+ |++|+|+||+++   ++ ++++.+
T Consensus       202 ~~~~~~~~li~Dea~~~~~~~~~--~~~~---~~~~-----~~~~i~~~s~sK~~-g~~G~r~G~~~~---~~~~l~~~l  267 (409)
T 2gb3_A          202 IAERHGLFLIVDEVYSEIVFRGE--FASA---LSIE-----SDKVVVIDSVSKKF-SACGARVGCLIT---RNEELISHA  267 (409)
T ss_dssp             HHHHTTCEEEEECTTTTCBCSSC--CCCG---GGSC-----CTTEEEEEESTTTT-TCGGGCCEEEEC---SCHHHHHHH
T ss_pred             HHHHcCCEEEEECcccccccCCC--CCCc---cccC-----CCCEEEEecchhcc-CCccceEEEEEE---CcHHHHHHH
Confidence            99999999999999999888652  2332   1221     12468899999999 889999999998   66 899888


Q ss_pred             HHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceE-ecCCceeEEeccc
Q 009517          377 YKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITC-NKAEGAMYLFPRI  454 (533)
Q Consensus       377 ~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~-~~~~gg~~~~~~~  454 (533)
                      ..... .+ +++++.|.++.++|+..          .+++++++++++++++++.+.|+++ |+.+ ..|.+++|+|+++
T Consensus       268 ~~~~~~~~-~~~~~~~~a~~~~l~~~----------~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~  335 (409)
T 2gb3_A          268 MKLAQGRL-APPLLEQIGSVGLLNLD----------DSFFDFVRETYRERVETVLKKLEEH-GLKRFTKPSGAFYITAEL  335 (409)
T ss_dssp             HHHHHHSC-CCCHHHHHHHHHHHTCC----------HHHHHHHHHHHHHHHHHHHHHHHHT-TCCCBCCCSBSSEEEEEC
T ss_pred             HHHHhccC-CCCHHHHHHHHHHHhcc----------HHHHHHHHHHHHHHHHHHHHHHHHc-CceeeeCCCeeEEEEEEe
Confidence            77654 44 88999999999888632          2446778888999999999999998 8888 7889999999765


Q ss_pred             CCCHHHHHHHHhcCCCChHHHHHHHHHc-----cceEEEcCCCCCCC--CCCceEEEEecCCcCcHHHHHHHHHHHHHHH
Q 009517          455 QLPEKAIKAAEAEKTVPDAFYCRRLLNA-----TGIVLVPGSGFGQV--PGTWHFRCTILPQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~-----~gV~v~pg~~f~~~--~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~  527 (533)
                      + .            .+...++..++++     +||.+.||..|+..  .+.++|||+++.++++|++++++|+++++++
T Consensus       336 ~-~------------~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~~~~e~i~~~~~~l~~~l~~~  402 (409)
T 2gb3_A          336 P-V------------EDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLMEGLKMF  402 (409)
T ss_dssp             S-S------------SCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred             C-C------------CCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHh
Confidence            4 1            1234455566655     59999999988642  2355999999988999999999999999887


Q ss_pred             HH
Q 009517          528 MD  529 (533)
Q Consensus       528 ~~  529 (533)
                      .+
T Consensus       403 ~~  404 (409)
T 2gb3_A          403 CS  404 (409)
T ss_dssp             HC
T ss_pred             hh
Confidence            54

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=100.00  E-value=2e-45  Score=384.80  Aligned_cols=385  Identities=14%  Similarity=0.131  Sum_probs=298.3

Q ss_pred             ccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHH
Q 009517           64 KVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSAD  143 (533)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~  143 (533)
                      .+..+++.+..+++..++++++++.+        .+|||++|.|......|.                        +.+.
T Consensus        24 ~~~~~~~~~~~~i~~~~~~~~~~~~~--------~~i~l~~g~~~d~~~~~~------------------------v~~a   71 (448)
T 3meb_A           24 VFSGFPASPPDAILNLTVLYNADTNP--------KKVNLGVGAYRDESGKPW------------------------ILPA   71 (448)
T ss_dssp             TTTTCCCCCCCTTHHHHHHHHHCCCT--------TCEEESSCCCCCTTSCCC------------------------CCHH
T ss_pred             HHhcCCCCCCChHHHHHHHHHhCCCC--------CeEEeecccccCCCCCEe------------------------chHH
Confidence            45667888888899999999885443        379999999943221111                        1344


Q ss_pred             HHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCC---CCCCCEEE--cCChHHHHHH--HHHHhccCCCC
Q 009517          144 SIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFP---ADPNDIFL--TDGASPAVHM--MMQLLIRSEND  216 (533)
Q Consensus       144 v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~---~~~~~i~~--t~G~~~al~~--~~~~l~~~~gd  216 (533)
                      +.+++.+...+... ....|.+..|.++||+++++++.   |.+   +++++|++  |+|+++++.+  .+..++ .+||
T Consensus        72 v~~a~~~~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~l~---g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~~-~~gd  146 (448)
T 3meb_A           72 VKEAEAIISSDLSK-YNKEYPPVAGFPLFLEAAQFLMF---GKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHLW-MPKA  146 (448)
T ss_dssp             HHHHHHHHHHCTTT-TCCSCCCTTCCHHHHHHHHHHHH---CTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHH-CTTC
T ss_pred             HHHHHHHHhhcccC-CCCCCCCCcchHHHHHHHHHHhc---CCCccccCcCcEEEEECCcHHHHHHHHHHHHHHh-CCCC
Confidence            55554443311111 36789999999999999999994   433   22689999  9999999988  445556 7999


Q ss_pred             eEEEcCCcCcchHHHHH----HhCCeEEEEecCCCC-CCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHH
Q 009517          217 GILCPIPQYPLYSASIA----LHGGTLVPYYLDEAT-GWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEEN  291 (533)
Q Consensus       217 ~Vlv~~p~~~~~~~~~~----~~g~~~~~v~~~~~~-~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~  291 (533)
                      +|++++|+|.+|...++    ..|++++.+++.+.+ +|++|+++|++++++.   .++++++++++||||||.+++.++
T Consensus       147 ~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e~l~~~l~~~---~~~~~~v~~~~p~NPtG~~~~~~~  223 (448)
T 3meb_A          147 EFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQSA---PEKSIFLFHACAHNPSGIDFTEAQ  223 (448)
T ss_dssp             CEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSBCHHHHHHHHHHS---CTTCEEEEESSSCTTTCCCCCHHH
T ss_pred             EEEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCCCcCHHHHHHHHHhC---CCCcEEEEeCCCCCCCCcCCCHHH
Confidence            99999999999999999    999999999995554 6899999999999862   125778888999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEccccccccccCC-CCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEec---
Q 009517          292 QRAIVDFCKKEGLVLLADEVYQENVYVPE-KKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTG---  367 (533)
Q Consensus       292 l~~i~~l~~~~~~~lI~De~y~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~---  367 (533)
                      |++|+++|++||+++|+||+|++|.+++. ....++..+. +     ...++|++.||||+| |++|+|+||+..+.   
T Consensus       224 l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~-~-----~~~~~i~~~S~SK~~-g~~G~RiG~l~~v~~~~  296 (448)
T 3meb_A          224 WKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFV-D-----AGVEVLVAQSFSKNF-GLYGERIGCLHVVHAGV  296 (448)
T ss_dssp             HHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHH-H-----TTCCEEEEEECTTTS-CCGGGCCEEEEEECCCC
T ss_pred             HHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHh-h-----cCCcEEEEecccccC-CCccccceeeeeeeccc
Confidence            99999999999999999999999887541 0112333322 1     123579999999999 89999999983221   


Q ss_pred             -----CCH----HHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Q 009517          368 -----FSA----EVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL-  436 (533)
Q Consensus       368 -----~~~----~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-  436 (533)
                           .++    ++++.+..... .+++++.++|.++..+|+++    ...+.|.++++.++++++++++.+.+.|+++ 
T Consensus       297 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~----~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~  372 (448)
T 3meb_A          297 EGSVEKNKALSAAMVSGMTLQIRKTWSMSAIHGAYIVQVIVHDK----RLLQMFYDNVKEMSARIHRMRSLLHASLAKRK  372 (448)
T ss_dssp             SSSHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cccccCCHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHhcCh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence                 145    66777766554 66788999999999998753    2345666778999999999999999999987 


Q ss_pred             -CC------ceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec-C
Q 009517          437 -EG------ITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-P  508 (533)
Q Consensus       437 -~g------~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-~  508 (533)
                       ++      +.+..|++++|+|++++                 ..++..+++++||++.||+      +    |||++ .
T Consensus       373 ~~~~~~~~~~~~~~~~~g~~~~~~~~-----------------~~~~~~ll~~~gV~v~~G~------g----Ris~a~~  425 (448)
T 3meb_A          373 TPGPGSKGTWDHILTAIGMFTFTGLT-----------------PEHVDYLKEKWSIYLVKAG------G----RMSMCGL  425 (448)
T ss_dssp             CCCSTTTCCCTHHHHCCSSEEECCCC-----------------HHHHHHHHHHHCEEECSGG------G----EEEGGGC
T ss_pred             CCCcCcccccceeCCCceEEEecCCC-----------------HHHHHHHHHhCCEEEeCCC------c----EEEEecC
Confidence             66      77888999999997653                 2335677788999999874      2    99997 5


Q ss_pred             CcCcHHHHHHHHHHHHHH
Q 009517          509 QEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       509 ~~e~i~~~~~~l~~~l~~  526 (533)
                      ++++|++++++|++++++
T Consensus       426 ~~~~i~~~~~~l~~~l~~  443 (448)
T 3meb_A          426 TESNCDYVAEAIHDAVTK  443 (448)
T ss_dssp             CTTTHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHh
Confidence            888999999999999874

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=100.00  E-value=4.2e-46  Score=387.05  Aligned_cols=354  Identities=17%  Similarity=0.265  Sum_probs=297.0

Q ss_pred             eeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHH
Q 009517           99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA  178 (533)
Q Consensus        99 ~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~  178 (533)
                      +|+|++|++++                      +.       |+.+++++.+++..    ....|++.  ..++++++++
T Consensus        63 ~i~~~~~~~~~----------------------~~-------~~~v~~a~~~~~~~----~~~~y~~~--~~~l~~~l~~  107 (421)
T 3l8a_A           63 LLQMWVADMDF----------------------LP-------VPEIKEAIINYGRE----HIFGYNYF--NDDLYQAVID  107 (421)
T ss_dssp             CEECCSSCCCS----------------------CC-------CHHHHHHHHHHHHH----CCSSCBCC--CHHHHHHHHH
T ss_pred             eeecccCCCCC----------------------CC-------CHHHHHHHHHHHhc----CCcCCCCC--CHHHHHHHHH
Confidence            99999998775                      22       79999999998876    35677765  3899999999


Q ss_pred             HHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecC-CCCCCCCCHHHH
Q 009517          179 GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLD-EATGWGLETSEV  257 (533)
Q Consensus       179 ~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~-~~~~~~ld~~~l  257 (533)
                      ++.+.+|.++++++|++|+|+++|+..+++.+. ++||+|+++.|+|+++...+...|.+++.+|++ .+++|.+|+++|
T Consensus       108 ~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~~~~-~~gd~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l  186 (421)
T 3l8a_A          108 WERKEHDYAVVKEDILFIDGVVPAISIALQAFS-EKGDAVLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEIDFEQL  186 (421)
T ss_dssp             HHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS-CTEEEEEEEESCCHHHHHHHHHTTEEEEEEECEEETTEEECCHHHH
T ss_pred             HHHHHhCCCCCHHHEEEcCCHHHHHHHHHHHhc-CCCCEEEECCCCcHHHHHHHHHCCCEEEeccccccCCCeeeCHHHH
Confidence            999999988889999999999999999999998 799999999999999999999999999999987 455678999999


Q ss_pred             HHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCC
Q 009517          258 KKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE  337 (533)
Q Consensus       258 ~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~  337 (533)
                      ++++++.     ++++|++++|+||||.+++++++++|+++|++||+++|+||+|.++.++|. .+.++..+..+.    
T Consensus       187 e~~i~~~-----~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~----  256 (421)
T 3l8a_A          187 EKDIIDN-----NVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGN-THHSLNTLDASY----  256 (421)
T ss_dssp             HHHHHHT-----TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC-CCCCGGGSCTTG----
T ss_pred             HHHhhcc-----CCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC-CCccHHHcCchh----
Confidence            9999842     799999999999999999999999999999999999999999999998764 344444432221    


Q ss_pred             CCceEEEEecCCccCCCCCCCeeEEEEEecCC-HHHHHHHHHhhh--ccccCChHHHHHHHHHcCCCCCCChhHHHHHHH
Q 009517          338 KDISLVSFQSVSKGYYGECGKRGGYMEVTGFS-AEVREQIYKVAS--VNLCSNISGQILASLVMSPPKVGDESYESYCAE  414 (533)
Q Consensus       338 ~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~-~~~~~~l~~~~~--~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~  414 (533)
                       ...++++.|+||++ |++|+|+||+++   + +++++.+.....  .+++++++++.++.++++.          ..++
T Consensus       257 -~~~~i~~~s~sK~~-g~~G~~~G~~~~---~~~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~----------~~~~  321 (421)
T 3l8a_A          257 -KDFTIILSSATKTF-NIAGTKNSFAII---QNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQY----------GKPW  321 (421)
T ss_dssp             -GGTEEEEECSHHHH-TCGGGCCEEEEC---CSHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHH----------CHHH
T ss_pred             -cCcEEEEEeChhhc-cCchhheEeEEc---CCHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhc----------cHHH
Confidence             24578999999999 789999999998   6 899998887653  4457899999999888742          1244


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCC
Q 009517          415 RDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFG  494 (533)
Q Consensus       415 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~  494 (533)
                      +++++++++++++++.+.|+++|++.++.+++++++|++++..          +. +...++..+++++||.+.||..|+
T Consensus       322 ~~~~~~~~~~~~~~l~~~L~~~~~i~~~~~~~~~~~~v~~~~~----------~~-~~~~l~~~l~~~~gi~v~~g~~f~  390 (421)
T 3l8a_A          322 LEELKTVIEGNIKLVIKELEAKTKIKVMEPEGTYLVWLDFSAY----------AI-AQPQLSEKLQNEAKVVLNDGAHFG  390 (421)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCSCEEECCSBSSEEEEECGGG----------TC-CTTHHHHHHHHTTCEECEEGGGGC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCceEeCCCeeEEEEEecccc----------CC-CHHHHHHHHHHhCCEEEECchhhC
Confidence            6778888999999999999887899999999999999766521          11 233455666677899999999997


Q ss_pred             CCCCCceEEEEecCCcCcHHHHHHHHHHHHH
Q 009517          495 QVPGTWHFRCTILPQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       495 ~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~  525 (533)
                       ..+.+++||+++.++++|++++++|+++++
T Consensus       391 -~~~~~~iRi~~~~~~~~i~~~l~~l~~~l~  420 (421)
T 3l8a_A          391 -KEGKYFARLNVATPKNTVQEALSRIISVFG  420 (421)
T ss_dssp             -GGGTTEEEEECCSCHHHHHHHHHHHHHHC-
T ss_pred             -CCCCCEEEEEecCCHHHHHHHHHHHHHHHh
Confidence             445569999999899999999999998875

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=100.00  E-value=2.6e-45  Score=380.41  Aligned_cols=367  Identities=21%  Similarity=0.313  Sum_probs=292.0

Q ss_pred             ceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHH
Q 009517           98 EILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA  177 (533)
Q Consensus        98 ~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia  177 (533)
                      ++|+|+.|.|...+.                         ...|+.+++++.+.+...   ....|++..|..+||+++|
T Consensus        34 ~~i~l~~g~p~~~~~-------------------------~~~~~~v~~a~~~~~~~~---~~~~y~~~~~~~~lr~~la   85 (416)
T 1bw0_A           34 PIIKLSVGDPTLDKN-------------------------LLTSAAQIKKLKEAIDSQ---ECNGYFPTVGSPEAREAVA   85 (416)
T ss_dssp             CCEECCCCCTTTTSC-------------------------SCCCHHHHHHHHHHHHTT---CSSSCCCTTCCHHHHHHHH
T ss_pred             CeEEecCcCCCcccC-------------------------CCCCHHHHHHHHHHhhCC---ccCCcCCCCCCHHHHHHHH
Confidence            489999999863110                         011788999998888652   2467988889999999999


Q ss_pred             HHHHh------hcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCC
Q 009517          178 AGIEA------RDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWG  251 (533)
Q Consensus       178 ~~~~~------~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~  251 (533)
                      +++++      .+|.++++++|++|+|+++++..+++.++ ++||+|+++.|+|+++...++..|++++.++++++.+|.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~al~~~~~~l~-~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~  164 (416)
T 1bw0_A           86 TWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAIC-DAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWE  164 (416)
T ss_dssp             HHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTE
T ss_pred             HHHHhhhcccccCCCCCCcceEEEeCChHHHHHHHHHHhC-CCCCEEEEcCCCcHhHHHHHHHcCcEEEEeecCcccCCC
Confidence            99983      25766788999999999999999999998 799999999999999999999999999999987655678


Q ss_pred             CCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCC---CcccHHH
Q 009517          252 LETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEK---KFHSFKK  328 (533)
Q Consensus       252 ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~---~~~~~~~  328 (533)
                      +|+++|++++++      ++++|++++|+||||.+++.+++++|+++|++||++||+||+|.++.|++..   ...++..
T Consensus       165 ~d~~~l~~~l~~------~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~  238 (416)
T 1bw0_A          165 ADLDEIRRLKDD------KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVAD  238 (416)
T ss_dssp             ECHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTS
T ss_pred             CCHHHHHHHhcc------CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHH
Confidence            999999999875      7899999999999999999999999999999999999999999998886531   2333322


Q ss_pred             HHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCH-----HHHHHHHHhhhccccCChHHHHHHHHHcCCCCC
Q 009517          329 VSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSA-----EVREQIYKVASVNLCSNISGQILASLVMSPPKV  403 (533)
Q Consensus       329 ~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~-----~~~~~l~~~~~~~~~~~~~~q~a~~~~L~~~~~  403 (533)
                      +       +.+.++|++.||||.+ +++|+|+||+++.  ++     .+...+......++++++++|+++..+|+... 
T Consensus       239 ~-------~~~~~~i~~~s~sK~~-~~~Glr~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-  307 (416)
T 1bw0_A          239 F-------ETTVPRVILGGTAKNL-VVPGWRLGWLLYV--DPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTP-  307 (416)
T ss_dssp             S-------CCSCCEEEEEESTTTT-SCGGGCCEEEEEE--CTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSC-
T ss_pred             c-------cCCCcEEEEecchhhC-CCCCceEEEEEee--CchhhHHHHHHHHHHHhccccCCCcHHHHHHHHHHhccc-
Confidence            2       2334579999999998 7899999999982  22     23333333322457789999999988885321 


Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHcc
Q 009517          404 GDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNAT  483 (533)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  483 (533)
                              .+++++++++++++++++.+.|+++||+.++.|.+++|+|++++...       ..+..+...++..+++++
T Consensus       308 --------~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~  372 (416)
T 1bw0_A          308 --------QEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEK-------YRDIKTDVEFFEKLLEEE  372 (416)
T ss_dssp             --------HHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCBTTEEEEEECGGG-------BSSCCSHHHHHHHHHHHH
T ss_pred             --------HHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeEEEEEeCCHHH-------cCCCCCHHHHHHHHHHHC
Confidence                    24456778889999999999999988999888899999997654110       000113455566676789


Q ss_pred             ceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHHHHH
Q 009517          484 GIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFM  528 (533)
Q Consensus       484 gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~~  528 (533)
                      ||.+.||..|+. ++  ++||+++.++++|++++++|.+++++..
T Consensus       373 gi~v~~g~~f~~-~~--~iRis~~~~~e~l~~~l~~l~~~l~~~~  414 (416)
T 1bw0_A          373 NVQVLPGTIFHA-PG--FTRLTTTRPVEVYREAVERIKAFCQRHA  414 (416)
T ss_dssp             CEECEEGGGGTC-TT--EEEEECCSCHHHHHHHHHHHHHHHHHHB
T ss_pred             CEEEecccccCC-CC--eEEEEecCCHHHHHHHHHHHHHHHHHhh
Confidence            999999999873 33  9999999888999999999999987654

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=100.00  E-value=2.5e-45  Score=381.75  Aligned_cols=366  Identities=19%  Similarity=0.242  Sum_probs=294.2

Q ss_pred             eeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHH
Q 009517           99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA  178 (533)
Q Consensus        99 ~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~  178 (533)
                      +|||+.|.|+..+                     .      .++.+.+++.+++..... ....|++..|..+||+++++
T Consensus        45 ~idl~~g~~~~~~---------------------~------~~~~v~~a~~~~~~~~~~-~~~~y~~~~g~~~lr~~la~   96 (425)
T 1vp4_A           45 AISFGGGVPDPET---------------------F------PRKELAEIAKEIIEKEYH-YTLQYSTTEGDPVLKQQILK   96 (425)
T ss_dssp             CEECCCCSCCGGG---------------------S------CHHHHHHHHHHHHHHSHH-HHTSCCCTTCCHHHHHHHHH
T ss_pred             ceeCCCCCCCccc---------------------C------CHHHHHHHHHHHHhhcch-hhcCCCCCCCCHHHHHHHHH
Confidence            8999999987411                     0      146778888877765211 13679988899999999999


Q ss_pred             HHHhhcCCC-CCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHH
Q 009517          179 GIEARDGFP-ADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEV  257 (533)
Q Consensus       179 ~~~~~~g~~-~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l  257 (533)
                      ++.+++|.+ +++++|++|+|+++++..++++++ ++||+|+++.|+|+++...++..|++++.++++++   ++|+++|
T Consensus        97 ~l~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~-~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~---~~d~~~l  172 (425)
T 1vp4_A           97 LLERMYGITGLDEDNLIFTVGSQQALDLIGKLFL-DDESYCVLDDPAYLGAINAFRQYLANFVVVPLEDD---GMDLNVL  172 (425)
T ss_dssp             HHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHC-CTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETT---EECHHHH
T ss_pred             HHHhccCCCCCCcccEEEeccHHHHHHHHHHHhC-CCCCEEEEeCCCcHHHHHHHHHcCCEEEEeccCCC---CCCHHHH
Confidence            998877877 778999999999999999999998 79999999999999999999999999999998753   5899999


Q ss_pred             HHHHHHHHhc--CCCeeEEE-EeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcC
Q 009517          258 KKQLEAAKAK--GITVRALV-VINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMG  334 (533)
Q Consensus       258 ~~~i~~~~~~--g~~~~~ii-l~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~  334 (533)
                      ++++++....  +.++++|+ +++|+||||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+.    
T Consensus       173 ~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~----  247 (425)
T 1vp4_A          173 ERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGE-TVDPIFKIG----  247 (425)
T ss_dssp             HHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSC-CCCCHHHHH----
T ss_pred             HHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCC-CCcCHHHhC----
Confidence            9999763211  12688884 679999999999999999999999999999999999999988654 334554441    


Q ss_pred             CCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHH
Q 009517          335 YGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCA  413 (533)
Q Consensus       335 ~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~  413 (533)
                         ...++|++.||||.+ | +|+|+||+++   ++++++.+..... .++++++++|.++..+|+...        +.+
T Consensus       248 ---~~~~~i~~~s~sK~~-~-~G~r~G~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~--------~~~  311 (425)
T 1vp4_A          248 ---GPERVVLLNTFSKVL-A-PGLRIGMVAG---SKEFIRKIVQAKQSADLCSPAITHRLAARYLERYD--------LLE  311 (425)
T ss_dssp             ---CTTTEEEEEESTTTT-C-GGGCEEEEEC---CHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSC--------HHH
T ss_pred             ---CCCCEEEEecccccc-c-cccceEEEee---CHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHhcCC--------HHH
Confidence               223579999999999 7 8999999998   8999998887654 556789999999998885321        335


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcC-C---CceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEc
Q 009517          414 ERDGILSSLARRAKTLEDAFNSL-E---GITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVP  489 (533)
Q Consensus       414 ~~~~~~~~~~~~~~~l~~~L~~~-~---g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~p  489 (533)
                      ++++++++++++++.+.+.|++. |   |+.++.|.+|+|+|++++.  +         . +...++..+++ +||.+.|
T Consensus       312 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~g~~~~~~~~~--~---------~-~~~~l~~~l~~-~gi~v~~  378 (425)
T 1vp4_A          312 QLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPE--G---------F-DTWEMFEYAKR-KKVFYVP  378 (425)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECCT--T---------C-CTTTTHHHHHH-HTEECEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccEEEEEEcCC--C---------C-CHHHHHHHHHH-CCCEEEC
Confidence            56778888999999999999874 5   6888888999999976641  1         1 12334445554 5999999


Q ss_pred             CCCCCCC-CCCceEEEEec-CCcCcHHHHHHHHHHHHHHHHHH
Q 009517          490 GSGFGQV-PGTWHFRCTIL-PQEDKIPAIVTRLTDFHKNFMDK  530 (533)
Q Consensus       490 g~~f~~~-~g~~~iRis~~-~~~e~i~~~~~~l~~~l~~~~~~  530 (533)
                      |..|+.. .+.++|||+++ .+++++++++++|+++++++.++
T Consensus       379 g~~f~~~~~~~~~iRis~~~~~~e~i~~~l~~l~~~l~~~~~~  421 (425)
T 1vp4_A          379 GRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLREVVLEYGKE  421 (425)
T ss_dssp             GGGGCTTCCCCSEEEEECSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhcCCCCCCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence            9988632 23459999998 57899999999999999987765

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=100.00  E-value=4.7e-45  Score=376.22  Aligned_cols=346  Identities=18%  Similarity=0.257  Sum_probs=282.4

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      |+.+.+++.+++..    ....|++.  ..+||+++++++.+.+|.++++++|++|+|+++|+..++++++ ++||+|++
T Consensus        46 ~~~v~~a~~~~~~~----~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~l~-~~gd~vl~  118 (399)
T 1c7n_A           46 PPELIEGLKKYLDE----TVLGYTGP--TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFT-KPGDGVII  118 (399)
T ss_dssp             CHHHHHHHHHHHHH----CCCSSBCC--CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC-CTTCEEEE
T ss_pred             CHHHHHHHHHHHhc----CCCCCCCC--cHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhc-CCCCEEEE
Confidence            68899998888865    24578775  8999999999999888887888999999999999999999998 79999999


Q ss_pred             cCCcCcchHHHHHHhCCeEEEEecCC-CCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHH
Q 009517          221 PIPQYPLYSASIALHGGTLVPYYLDE-ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC  299 (533)
Q Consensus       221 ~~p~~~~~~~~~~~~g~~~~~v~~~~-~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~  299 (533)
                      +.|+|+++...+...|.+++.+++++ +++|.+|+++|+++++..     ++++|++++||||||.+++.+++++|+++|
T Consensus       119 ~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~~~~l~~i~~~~  193 (399)
T 1c7n_A          119 ITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDK-----NNKALLFCSPHNPVGRVWKKDELQKIKDIV  193 (399)
T ss_dssp             CSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCT-----TEEEEEEESSBTTTTBCCCHHHHHHHHHHH
T ss_pred             cCCCcHhHHHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhccC-----CCcEEEEcCCCCCCCcCcCHHHHHHHHHHH
Confidence            99999999999999999999999863 334679999999999732     799999999999999999999999999999


Q ss_pred             HHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCC-HHHHHHHHH
Q 009517          300 KKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFS-AEVREQIYK  378 (533)
Q Consensus       300 ~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~-~~~~~~l~~  378 (533)
                      ++||+++|+||+|.++.+++. ...++..+..++     ..+++++.||||.+ |++|+|+||+++   + +++++.+..
T Consensus       194 ~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~-----~~~~i~~~s~sK~~-~~~G~r~G~~~~---~~~~~~~~l~~  263 (399)
T 1c7n_A          194 LKSDLMLWSDEIHFDLIMPGY-EHTVFQSIDEQL-----ADKTITFTAPSKTF-NIAGMGMSNIII---KNPDIRERFTK  263 (399)
T ss_dssp             HHSSCEEEEECTTTTCBCTTC-CCCCGGGSCHHH-----HTTEEEEECSHHHH-TCGGGCCEEEEC---CCHHHHHHHHH
T ss_pred             HHcCCEEEEEccccccccCCC-CcccHHHcCccc-----cCcEEEEEeChhhc-cccchheEEEEE---CCHHHHHHHHH
Confidence            999999999999999988653 233443321110     12468999999999 889999999997   5 679888877


Q ss_pred             hhh-cc-ccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCceEecCCceeEEecccC
Q 009517          379 VAS-VN-LCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNS-LEGITCNKAEGAMYLFPRIQ  455 (533)
Q Consensus       379 ~~~-~~-~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~gg~~~~~~~~  455 (533)
                      ... .+ .++++++|.++.++|+..          .+++++++++++++++++.+.|++ +||+.++.+++++++|++++
T Consensus       264 ~~~~~~~~~~~~~~~~a~~~~l~~~----------~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~  333 (399)
T 1c7n_A          264 SRDATSGMPFTTLGYKACEICYKEC----------GKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFR  333 (399)
T ss_dssp             HHHHTTCCCCCHHHHHHHHHHHHHC----------HHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCSBSSEEEEECG
T ss_pred             HHhhcccCCCCHHHHHHHHHHHhCC----------hHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEecCCceEEEEEEcc
Confidence            654 32 367899999888887421          245677888899999999999998 78999999999999997654


Q ss_pred             CCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHHHHHHH
Q 009517          456 LPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMDK  530 (533)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~~~~  530 (533)
                      ..          +. +...++..+++++||.+.||..|+. .+.++|||+++.++++|++++++|+++++++.++
T Consensus       334 ~~----------~~-~~~~~~~~l~~~~gi~v~~g~~~~~-~~~~~iRis~~~~~~~l~~~l~~l~~~l~~~~~~  396 (399)
T 1c7n_A          334 AL----------KM-DHKAMEEFMIHKAQIFFDEGYIFGD-GGIGFERINLAAPSSVIQESLERLNKALKDLKNR  396 (399)
T ss_dssp             GG----------CC-CHHHHHHHHHHTTCCCCEEGGGGCG-GGTTEEEEECCSCHHHHHHHHHHHHHHHHHHC--
T ss_pred             cC----------CC-CHHHHHHHHHHhCCEEEeCccccCC-CCCCeEEEEeccCHHHHHHHHHHHHHHHHHHHhc
Confidence            10          01 2344555655678999999998872 3445999999977889999999999999887653

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=100.00  E-value=3.5e-44  Score=374.20  Aligned_cols=380  Identities=15%  Similarity=0.173  Sum_probs=304.9

Q ss_pred             cCccccccchHHHHHHHHH-HhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHH
Q 009517           67 KCEYAVRGEIVSIAQRLQQ-ELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSI  145 (533)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~  145 (533)
                      ....+++..++..+..+.. .|++         +|||+.|.|..                      +.       |+.++
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~g~~---------~i~l~~~~~~~----------------------~~-------~~~v~   63 (437)
T 3g0t_A           22 DLGMASIRDLVALVTNLEKATGTK---------FCRMEMGVPGL----------------------PA-------PQIGI   63 (437)
T ss_dssp             CGGGCCHHHHHHHHHHHHHHHTCC---------CEECCCCSCCS----------------------CC-------CHHHH
T ss_pred             cCCCcHHHHHHHHHHHHHHhcCCC---------EEeccCcCCCC----------------------CC-------CHHHH
Confidence            3445666677777766543 2444         99999999864                      21       78999


Q ss_pred             HHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc-CCCC--eEEEcC
Q 009517          146 ERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-SEND--GILCPI  222 (533)
Q Consensus       146 ~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd--~Vlv~~  222 (533)
                      +++.+.+...   ....|++..|..++|+++++++++.+|+++++++|++|+|+++++..+++.++. ++||  +|+++.
T Consensus        64 ~a~~~~~~~~---~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~al~~~~~~l~~~~~gd~~~Vl~~~  140 (437)
T 3g0t_A           64 ETEIQKLREG---VASIYPNLDGLPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFVSFLVANRTHKNREYGTLFID  140 (437)
T ss_dssp             HHHHHHHHHT---GGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHTTSCTTCSCCEEEEE
T ss_pred             HHHHHHHhCC---cCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHHHHHHHHHHhcCCCCCccEEEEeC
Confidence            9999888751   127899999999999999999999999999999999999999999999999851 4899  999999


Q ss_pred             CcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHc
Q 009517          223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKE  302 (533)
Q Consensus       223 p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~  302 (533)
                      |+|.++...++..|++++.++++ +.+|.+|+++|+++++..     ++++|++++||||||.+++.+++++|+++|++|
T Consensus       141 p~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~l~~~-----~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~  214 (437)
T 3g0t_A          141 PGFNLNKLQCRILGQKFESFDLF-EYRGEKLREKLESYLQTG-----QFCSIIYSNPNNPTWQCMTDEELRIIGELATKH  214 (437)
T ss_dssp             SCCHHHHHHHHHHTCCCEEEEGG-GGCTTHHHHHHHHHHTTT-----CCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHT
T ss_pred             CCcHhHHHHHHHcCCEEEEEeec-CCCCccCHHHHHHHHhcC-----CceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHC
Confidence            99999999999999999999998 457789999999999432     799999999999999999999999999999999


Q ss_pred             CCEEEEccccccccccCCCCc---ccH-HHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHH-H--
Q 009517          303 GLVLLADEVYQENVYVPEKKF---HSF-KKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVRE-Q--  375 (533)
Q Consensus       303 ~~~lI~De~y~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~-~--  375 (533)
                      |+++|+||+|.++.+++..+.   .++ ..+ .+     ...+++++.||||++ |++|+|+||+++   ++++++ .  
T Consensus       215 ~~~li~De~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~i~~~s~sK~~-~~~G~r~G~~~~---~~~~~~~~~~  284 (437)
T 3g0t_A          215 DVIVIEDLAYFGMDFRKDYSHPGEPLYQPSV-AN-----YTDNYILALSSSKAF-SYAGQRIGVLMI---SGKLYEREYP  284 (437)
T ss_dssp             TCEEEEECTTTTCCTTSCCCSTTSSCCCCCG-GG-----TCSCEEEEEESTTTT-SCGGGCCEEEEE---CHHHHHCBCG
T ss_pred             CcEEEEEcchhhcccCCCcCcccccchhhcc-CC-----CCCcEEEEEcCccCC-CCccceeEEEEE---CHHHhhhhhh
Confidence            999999999999888643222   000 122 11     123579999999999 889999999998   889888 7  


Q ss_pred             ---------------HHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 009517          376 ---------------IYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGI  439 (533)
Q Consensus       376 ---------------l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~  439 (533)
                                     +..... .++++++++|.++..+|+..       +.|..++++++++++++++.+.+.|+++ |+
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~  356 (437)
T 3g0t_A          285 DLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKAC-------NDGEYNFRDSVIEYGRKARIMKKMFLDN-GF  356 (437)
T ss_dssp             GGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHHH-------HTTSCCHHHHHHHHHHHHHHHHHHHHTT-TE
T ss_pred             cccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhCc-------HhHHHHHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence                           665554 56788999999999888521       1111116778889999999999999999 99


Q ss_pred             eEe------cC-CceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec-CCcC
Q 009517          440 TCN------KA-EGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-PQED  511 (533)
Q Consensus       440 ~~~------~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-~~~e  511 (533)
                      .+.      .| .+++|+|++++ .           . +...++..+ .++||.+.||..|+. ...++|||+++ .+++
T Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~-~-----------~-~~~~l~~~L-~~~gi~v~~~~~~~~-~~~~~iRis~~~~~~e  421 (437)
T 3g0t_A          357 NIVYDKDGNEPLADGFYFTVGYK-G-----------M-DSSKLIEKF-VRYGMCAITLKTTGS-KRNEAMRICTSLLPES  421 (437)
T ss_dssp             EESSCEETTEECCSSSEEEEEET-T-----------C-CHHHHHHHH-HHTTEECEESTTTTC-CCTTCEEEECSSSCGG
T ss_pred             EEeccccCCCCCceeEEEEEecC-C-----------C-CHHHHHHHH-HHcCeEEeeccccCC-CCCCEEEEEEecCCHH
Confidence            888      34 89999997765 1           1 234445454 467999999999874 33348999998 6899


Q ss_pred             cHHHHHHHHHHHHHH
Q 009517          512 KIPAIVTRLTDFHKN  526 (533)
Q Consensus       512 ~i~~~~~~l~~~l~~  526 (533)
                      +|++++++|++++++
T Consensus       422 ~i~~~~~~l~~~~~~  436 (437)
T 3g0t_A          422 QFPDLEKRLQMLNAE  436 (437)
T ss_dssp             GHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999988753

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=100.00  E-value=4.5e-45  Score=380.55  Aligned_cols=380  Identities=20%  Similarity=0.269  Sum_probs=299.2

Q ss_pred             cCcCcccccCcc-ccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCccccc
Q 009517           59 DSLNPKVLKCEY-AVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQ  137 (533)
Q Consensus        59 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~  137 (533)
                      ..+++++..+++ +++..+..+......... +      +++|+|++|+|++                      +.    
T Consensus        24 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~------~~~i~l~~~~~~~----------------------~~----   70 (432)
T 3ei9_A           24 VSRNSNMSKLQAGYLFPEIARRRSAHLLKYP-D------AQVISLGIGDTTE----------------------PI----   70 (432)
T ss_dssp             CCCCHHHHHCCSSCHHHHHHHHHHHHHHHCT-T------CCCEECSSCCCCS----------------------CC----
T ss_pred             cccChHHHhCCCCccHHHHHHHHHhhhhcCC-C------CCeEEccCCCCCC----------------------CC----
Confidence            445667777776 477666666555443211 1      2399999999874                      32    


Q ss_pred             CCCCHHHHHHHHHHHhcCCC-CCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCC
Q 009517          138 GLFSADSIERAWQILDQIPG-RATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND  216 (533)
Q Consensus       138 ~~~p~~v~~~~~~~~~~~~~-~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd  216 (533)
                         |+.+++++.+++.+... .....|++..|..+||+++++++.+  +..+++++|++|+|+++++..+ ..++ ++||
T Consensus        71 ---~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~--~~~~~~~~i~~t~G~~~al~~l-~~l~-~~gd  143 (432)
T 3ei9_A           71 ---PEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYG--GLGIGDDDVFVSDGAKCDISRL-QVMF-GSNV  143 (432)
T ss_dssp             ---CHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHT--TTTCCGGGEEEESCHHHHHHHH-HHHH-CTTC
T ss_pred             ---CHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHc--cCCCCcceEEECCChHHHHHHH-HHHc-CCCC
Confidence               78999999888875321 1346799889999999999999974  5557789999999999999985 5666 7999


Q ss_pred             eEEEcCCcCcchHHHHHHhCC------------eEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCc
Q 009517          217 GILCPIPQYPLYSASIALHGG------------TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTG  284 (533)
Q Consensus       217 ~Vlv~~p~~~~~~~~~~~~g~------------~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG  284 (533)
                      +|++++|+|+++...++..|.            +++.++++.+.++..|++.           .+++++|++++||||||
T Consensus       144 ~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------~~~~~~v~l~~p~NPtG  212 (432)
T 3ei9_A          144 TIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST-----------VGRTDIIFFCSPNNPTG  212 (432)
T ss_dssp             CEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGG-----------CCCCSEEEEESSCTTTC
T ss_pred             EEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCcCChhh-----------CCCCCEEEEeCCCCCCC
Confidence            999999999999999998884            6788888766566666443           12789999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEE
Q 009517          285 QVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYME  364 (533)
Q Consensus       285 ~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~  364 (533)
                      .+++.+++++|+++|++||++||+||+|.++.+++.  ..++..+ ..     ...++|++.||||+| |++|+|+||++
T Consensus       213 ~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~--~~~~~~~-~~-----~~~~~i~~~S~SK~~-g~~G~r~G~~~  283 (432)
T 3ei9_A          213 AAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDN--PRSIFEI-PG-----AEEVAMETASFSNYA-GFTGVRLGWTV  283 (432)
T ss_dssp             CCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSC--CSSGGGS-TT-----GGGTEEEEEESHHHH-CTTTTCCEEEE
T ss_pred             CCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCC--CCChhhc-CC-----CCCeEEEEecchhcc-CCcccceEEEE
Confidence            999999999999999999999999999999888643  2333332 11     123579999999999 89999999999


Q ss_pred             EecCCHHH--------HHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009517          365 VTGFSAEV--------REQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNS  435 (533)
Q Consensus       365 ~~~~~~~~--------~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  435 (533)
                      +   ++++        ++.+..... .++++++++|.++.+++.+         ...+++++++++++++++++.+.|++
T Consensus       284 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---------~~~~~~~~~~~~~~~~~~~l~~~L~~  351 (432)
T 3ei9_A          284 I---PKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTP---------EGLEAMHKVIGFYKENTNIIIDTFTS  351 (432)
T ss_dssp             C---CTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             E---ChHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhc---------ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8   6666        677766654 5567899999999888852         12245678889999999999999999


Q ss_pred             CCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHH
Q 009517          436 LEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPA  515 (533)
Q Consensus       436 ~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~  515 (533)
                      + |+.+..+.+++|+|++++  .           .+...++..+++++||.+.||..|+ ..+.++|||++..++++|++
T Consensus       352 ~-g~~~~~~~~~~~~~~~~~--~-----------~~~~~~~~~ll~~~gv~v~~g~~f~-~~~~~~iRis~~~~~e~l~~  416 (432)
T 3ei9_A          352 L-GYDVYGGKNAPYVWVHFP--N-----------QSSWDVFAEILEKTHVVTTPGSGFG-PGGEGFVRVSAFGHRENILE  416 (432)
T ss_dssp             T-TCCEEECSSSSEEEEECT--T-----------SCHHHHHHHHHHHHCEECEEGGGGC-GGGTTEEEEECCSCHHHHHH
T ss_pred             C-CceecCCCcceEEEEECC--C-----------CCHHHHHHHHHHHCCEEEeCchHhC-CCCCCEEEEEecCCHHHHHH
Confidence            8 999988888999997765  1           1245566778888899999999998 45566999999889999999


Q ss_pred             HHHHHHHHHH
Q 009517          516 IVTRLTDFHK  525 (533)
Q Consensus       516 ~~~~l~~~l~  525 (533)
                      ++++|++--+
T Consensus       417 ~l~rl~~~~~  426 (432)
T 3ei9_A          417 ACRRFKQLYK  426 (432)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhh
Confidence            9999987543

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=100.00  E-value=1.6e-44  Score=371.27  Aligned_cols=374  Identities=15%  Similarity=0.201  Sum_probs=288.0

Q ss_pred             HHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCC
Q 009517           78 SIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPG  157 (533)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~  157 (533)
                      .++.....|+.+++.+- .+++|||+.|.+..                      ..       |+.+.+++.+++..   
T Consensus        10 ~~~~~~~~~d~~~~~~~-~~~~i~l~~~~~~~----------------------~~-------~~~v~~a~~~~~~~---   56 (390)
T 1d2f_A           10 RHGTWCTQWDYVADRFG-TADLLPFTISDMDF----------------------AT-------APCIIEALNQRLMH---   56 (390)
T ss_dssp             ---------------------CEECCSSSCSS----------------------CC-------CHHHHHHHHHHHTT---
T ss_pred             ccCCCccchhhhccccC-CCCeeEeeecCCCC----------------------CC-------CHHHHHHHHHHHhC---
Confidence            34444445544433111 13489999998764                      21       78899999888864   


Q ss_pred             CCccccCCCcccHH-HHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhC
Q 009517          158 RATGAYSHSQGIKG-LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHG  236 (533)
Q Consensus       158 ~~~~~Y~~~~G~~~-lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g  236 (533)
                       ....|++.  ..+ ||+++++++.+.+|.++++++|++|+|+++++..+++.++ ++||+|+++.|+|+++...++..|
T Consensus        57 -~~~~y~~~--~~~~lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~-~~gd~vl~~~p~y~~~~~~~~~~g  132 (390)
T 1d2f_A           57 -GVFGYSRW--KNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWS-ETGEGVVIHTPAYDAFYKAIEGNQ  132 (390)
T ss_dssp             -CCCCCCCS--CCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSS-CTTCEEEEEESCCHHHHHHHHHTT
T ss_pred             -CCCCCCCC--ChHHHHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHHHHHhc-CCCCEEEEcCCCcHHHHHHHHHCC
Confidence             24578775  678 9999999999888988889999999999999999999998 799999999999999999999999


Q ss_pred             CeEEEEecCCCC-CCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccc
Q 009517          237 GTLVPYYLDEAT-GWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN  315 (533)
Q Consensus       237 ~~~~~v~~~~~~-~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~  315 (533)
                      .+++.+|++.++ +|.+|+++|++++++.     ++++|++++|+||||.+++.+++++|+++|++||+++|+||+|.++
T Consensus       133 ~~~~~v~~~~~~~~~~~d~~~l~~~l~~~-----~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~  207 (390)
T 1d2f_A          133 RTVMPVALEKQADGWFCDMGKLEAVLAKP-----ECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDM  207 (390)
T ss_dssp             CEEEEEECEECSSSEECCHHHHHHHHTST-----TEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTC
T ss_pred             CEEEEeecccCCCccccCHHHHHHHhccC-----CCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEcccccc
Confidence            999999987553 5779999999999742     6899999999999999999999999999999999999999999998


Q ss_pred             cccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh--cc-ccCChHHHH
Q 009517          316 VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS--VN-LCSNISGQI  392 (533)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~--~~-~~~~~~~q~  392 (533)
                      .+++. .+.++..+       .++..-+ +.||||.+ |++|+|+||+++  .++++++.+.....  .+ ++++++++.
T Consensus       208 ~~~g~-~~~~~~~~-------~~~~~d~-~~s~sK~~-~~~G~r~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (390)
T 1d2f_A          208 VWGEQ-PHIPWSNV-------ARGDWAL-LTSGSKSF-NIPALTGAYGII--ENSSSRDAYLSALKGRDGLSSPSVLALT  275 (390)
T ss_dssp             BCSSS-CCCCGGGT-------CCSSEEE-EECSHHHH-TCGGGCCEEEEE--CSHHHHHHHHHHHHTTSCCCSCCHHHHH
T ss_pred             ccCCC-CCcCHHHc-------chhhHhh-ccCccHhh-cccChhheEEEE--CCHHHHHHHHHHHhhhcccCCCCHHHHH
Confidence            88653 33443332       2221013 99999999 789999999997  23788888876653  33 378899998


Q ss_pred             HHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCceEecCCceeEEecccCCCHHHHHHHHhcCCCC
Q 009517          393 LASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNS-LEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVP  471 (533)
Q Consensus       393 a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~  471 (533)
                      ++.++|+.          ..+++++++++++++++.+.+.|++ +||+.++.+++++++|++++  ..        +. +
T Consensus       276 a~~~~l~~----------~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~--~~--------~~-~  334 (390)
T 1d2f_A          276 AHIAAYQQ----------GAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLDLR--PL--------NI-D  334 (390)
T ss_dssp             HHHHHHHH----------CHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSBCSEEEEECG--GG--------CC-C
T ss_pred             HHHHHHhc----------CHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEecCCccEEEEEEcc--cc--------CC-C
Confidence            88887742          1244677888899999999999998 78999899999999997654  10        01 2


Q ss_pred             hHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHHHH
Q 009517          472 DAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       472 ~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~  527 (533)
                      ...++..+++++||.+.||..|+. .+.++|||+++.++++|++++++|+++++++
T Consensus       335 ~~~l~~~l~~~~gi~v~~g~~f~~-~~~~~~Ris~~~~~~~l~~~l~~l~~~l~~~  389 (390)
T 1d2f_A          335 DNALQKALIEQEKVAIMPGYTYGE-EGRGFVRLNAGCPRSKLEKGVAGLINAIRAV  389 (390)
T ss_dssp             HHHHHHHHHHTTCEECEEGGGGCG-GGTTEEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCEEeeCccccCC-CCCCeEEEEecCCHHHHHHHHHHHHHHHHhh
Confidence            344555665578999999999862 3345999999977889999999999988764

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=100.00  E-value=1.7e-44  Score=370.71  Aligned_cols=352  Identities=15%  Similarity=0.245  Sum_probs=291.6

Q ss_pred             eeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHH
Q 009517           99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA  178 (533)
Q Consensus        99 ~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~  178 (533)
                      +|+|+.|++..                      +.       |+.+++++.+++.+    ....|++  +..++++++++
T Consensus        34 ~i~l~~~~~~~----------------------~~-------~~~v~~a~~~~~~~----~~~~y~~--~~~~~~~~l~~   78 (391)
T 4dq6_A           34 LLPMWVADMDF----------------------KA-------APCIIDSLKNRLEQ----EIYGYTT--RPDSYNESIVN   78 (391)
T ss_dssp             SEECCSSSCSS----------------------CC-------CHHHHHHHHHHHTT----CCCCCBC--CCHHHHHHHHH
T ss_pred             ceeccccCCCC----------------------CC-------CHHHHHHHHHHHhC----CCCCCCC--CCHHHHHHHHH
Confidence            89999998764                      22       78999999988875    2456766  56999999999


Q ss_pred             HHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecC--CCCCCCCCHHH
Q 009517          179 GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLD--EATGWGLETSE  256 (533)
Q Consensus       179 ~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~--~~~~~~ld~~~  256 (533)
                      ++.+.+|.++++++|++|+|+++++..+++.++ ++||+|+++.|+|+++...++..|++++.++++  .+++|.+|+++
T Consensus        79 ~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~-~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~  157 (391)
T 4dq6_A           79 WLYRRHNWKIKSEWLIYSPGVIPAISLLINELT-KANDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYED  157 (391)
T ss_dssp             HHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS-CTTCEEEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCHHH
T ss_pred             HHHHHhCCCCcHHHeEEcCChHHHHHHHHHHhC-CCCCEEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeHHH
Confidence            999999988889999999999999999999998 899999999999999999999999999999988  55567899999


Q ss_pred             HHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCC
Q 009517          257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG  336 (533)
Q Consensus       257 l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~  336 (533)
                      +++++++       +++|++++|+||||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+..+.   
T Consensus       158 l~~~l~~-------~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~---  226 (391)
T 4dq6_A          158 IENKIKD-------VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKH-KHIPMASISKEF---  226 (391)
T ss_dssp             HHHHCTT-------EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC-CCCCGGGSCHHH---
T ss_pred             HHHHhhc-------CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCC-CccCHHHcCccc---
Confidence            9998853       88999999999999999999999999999999999999999999988763 334443332211   


Q ss_pred             CCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh--ccccCChHHHHHHHHHcCCCCCCChhHHHHHHH
Q 009517          337 EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS--VNLCSNISGQILASLVMSPPKVGDESYESYCAE  414 (533)
Q Consensus       337 ~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~--~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~  414 (533)
                        ..+++++.||||.+ |++|+|+||+++  .++++++.+.....  .+++++++++.++..+|...          .++
T Consensus       227 --~~~~i~~~s~sK~~-g~~G~r~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~----------~~~  291 (391)
T 4dq6_A          227 --EKNTITCMAPTKTF-NIAGLQSSYVVL--PDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNNG----------ESW  291 (391)
T ss_dssp             --HHTEEEEECSHHHH-TCGGGCCEEEEC--CSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC----------HHH
T ss_pred             --cCcEEEEEechhhc-cCcccceEEEEe--CCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhch----------HHH
Confidence              13578999999999 889999999987  23488888877653  44578899998888877421          244


Q ss_pred             HHHHHHHHHHHHHHHHHHHhc-CCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCC
Q 009517          415 RDGILSSLARRAKTLEDAFNS-LEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGF  493 (533)
Q Consensus       415 ~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f  493 (533)
                      +++++++++++++.+.+.|++ +||+.++.+++++++|++++..          + .+...++..+++++||.+.||..|
T Consensus       292 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~~~~~~l~~~~gi~v~~g~~~  360 (391)
T 4dq6_A          292 LESFLEYLESNIDFAIKYINENMPKLKVRKPEGTYLLWVDFSAL----------G-LSDEELESILVQKGKVALNQGNSF  360 (391)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCTTSEECCCSBSSEEEEECGGG----------C-CCHHHHHHHHHHTTCEECEEGGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCCEecCCCccEEEEEEhhhc----------C-CCHHHHHHHHHHhCCEEeeCchhh
Confidence            677888899999999999988 6899999999999999765410          1 124455556665559999999999


Q ss_pred             CCCCCCceEEEEecCCcCcHHHHHHHHHHHH
Q 009517          494 GQVPGTWHFRCTILPQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       494 ~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l  524 (533)
                      +. .+.+++||+++.++++|++++++|++++
T Consensus       361 ~~-~~~~~iRis~~~~~~~i~~~l~~l~~~l  390 (391)
T 4dq6_A          361 GI-GGSGYQRINLACPRSMLEEALIRIKNAI  390 (391)
T ss_dssp             CT-TCTTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred             CC-CCCCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence            84 4556999999988899999999999876

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=100.00  E-value=1.9e-44  Score=371.42  Aligned_cols=338  Identities=16%  Similarity=0.148  Sum_probs=270.8

Q ss_pred             CHHHHHHHHH-HHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCC--CEEEcCChHHHHHHHHH--HhccCCC
Q 009517          141 SADSIERAWQ-ILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN--DIFLTDGASPAVHMMMQ--LLIRSEN  215 (533)
Q Consensus       141 p~~v~~~~~~-~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~--~i~~t~G~~~al~~~~~--~l~~~~g  215 (533)
                      ++.+++++.+ .+...   ....|++..|..++|+++++++.+.++..++++  +|++|+|+++++..+++  .++ ++|
T Consensus        46 ~~~v~~a~~~~~~~~~---~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~-~~g  121 (397)
T 3fsl_A           46 LQAVAEAEARLNAQPH---GASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRY-FPE  121 (397)
T ss_dssp             CHHHHHHHHHHHHSCC---CCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHH-CTT
T ss_pred             cHHHHHHHHhhccCcc---ccccCCCCCchHHHHHHHHHHHhcCCcccccccceEEEEcCCcHHHHHHHHHHHHhc-CCC
Confidence            5889999888 77642   256899999999999999999986655444688  89999999999999954  445 799


Q ss_pred             CeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHH
Q 009517          216 DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAI  295 (533)
Q Consensus       216 d~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i  295 (533)
                      |+|+++.|+|.+|...++..|.+++.+++..++++++|++.+++++++.   .++++++++++||||||.+++.+++++|
T Consensus       122 d~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~v~~~~p~nptG~~~~~~~l~~l  198 (397)
T 3fsl_A          122 SGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTL---QAGSIVLLHPCCHNPTGADLTNDQWDAV  198 (397)
T ss_dssp             CCEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTC---CTTCEEEECSSSCTTTCCCCCHHHHHHH
T ss_pred             CeEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhC---CCCCEEEEeCCCCCCCCcCCCHHHHHHH
Confidence            9999999999999999999999999999855557899999999999742   1268888889999999999999999999


Q ss_pred             HHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHH
Q 009517          296 VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQ  375 (533)
Q Consensus       296 ~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~  375 (533)
                      +++|++||+++|+||+|.++.+++.....++..+. +     ...++|++.||||++ |++|+|+||+++...+++++..
T Consensus       199 ~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~-~-----~~~~~i~~~S~SK~~-~~~G~riG~~~~~~~~~~~~~~  271 (397)
T 3fsl_A          199 IEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIA-S-----AGLPALVSNSFSKIF-SLYGERVGGLSVMCEDAEAAGR  271 (397)
T ss_dssp             HHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHH-H-----TTCCEEEEEECTTTT-TCGGGCCEEEEEECSSHHHHHH
T ss_pred             HHHHHhCCEEEEEecCchhhccCcccccHHHHHHH-h-----cCCCEEEEecccccc-cCcCCCeeEEEEecCCHHHHHH
Confidence            99999999999999999999886433334444432 2     123579999999999 8999999999864346666654


Q ss_pred             HHH----hh-hccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CceEecCCce
Q 009517          376 IYK----VA-SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLE---GITCNKAEGA  447 (533)
Q Consensus       376 l~~----~~-~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---g~~~~~~~gg  447 (533)
                      +..    .. ..+.+++.++|.++..++.+.    .....|.+++++++++++++++++.+.|++++   |+.+..|+++
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~  347 (397)
T 3fsl_A          272 VLGQLKATVRRNYSSPPNFGAQVVAAVLNDE----ALKASWLKEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRG  347 (397)
T ss_dssp             HHHHHHHHHHTTTSSCCSHHHHHHHHHHTSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCTHHHHCCS
T ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeecCCce
Confidence            422    22 245567889999998888642    12223456778899999999999999999874   7888889999


Q ss_pred             eEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec-CCcCcHHHHHHHHHHHH
Q 009517          448 MYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-PQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~~~~l~~~l  524 (533)
                      +|+|++++                . ..+..+++++||.+.||.           ||+++ .++++|++++++|++++
T Consensus       348 ~~~~~~~~----------------~-~~~~~~l~~~gi~v~~g~-----------Ris~~~~~~~~i~~~~~~l~~~l  397 (397)
T 3fsl_A          348 MFSYTGLS----------------A-AQVDRLREEFGVYLIASG-----------RMCVAGLNTANVQRVAKAFAAVM  397 (397)
T ss_dssp             SEEECCCC----------------H-HHHHHHHHTTCEECCTTC-----------EEEGGGCCTTTHHHHHHHHHHHC
T ss_pred             EEEecCCC----------------H-HHHHHHHHhCCEEECCCC-----------eEEEEecCHhhHHHHHHHHHhhC
Confidence            99996553                1 224577888999999852           99998 58899999999998753

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=100.00  E-value=6.8e-44  Score=367.44  Aligned_cols=341  Identities=19%  Similarity=0.301  Sum_probs=276.2

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      ++.+.+++.+++.+... ....|++..|..+||++++++++      +++++|++|+|+++++..+++++. ++||+|++
T Consensus        49 ~~~v~~a~~~~~~~~~~-~~~~y~~~~~~~~l~~~la~~~g------~~~~~v~~~~g~~~al~~~~~~~~-~~gd~Vl~  120 (397)
T 2zyj_A           49 KEEAAEAAARILREKGE-VALQYSPTEGYAPLRAFVAEWIG------VRPEEVLITTGSQQALDLVGKVFL-DEGSPVLL  120 (397)
T ss_dssp             HHHHHHHHHHHHHHHHH-HHTSCCCTTCCHHHHHHHHHHHT------SCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEE
T ss_pred             HHHHHHHHHHHHHhcch-hhhCCCCCCCCHHHHHHHHHHhC------CChhhEEEeccHHHHHHHHHHHhC-CCCCEEEE
Confidence            46777777777764210 13578888899999999999983      567899999999999999999998 79999999


Q ss_pred             cCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEE-EeCCCCCCccCCCHHHHHHHHHHH
Q 009517          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALV-VINPGNPTGQVLAEENQRAIVDFC  299 (533)
Q Consensus       221 ~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~ii-l~~p~NPtG~~~s~~~l~~i~~l~  299 (533)
                      +.|+|+++...++..|.+++.++.+++   ++|+++|++++++.     ++++|+ +++||||||.+++.+++++|+++|
T Consensus       121 ~~p~y~~~~~~~~~~g~~~~~~~~~~~---~~d~~~l~~~l~~~-----~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~  192 (397)
T 2zyj_A          121 EAPSYMGAIQAFRLQGPRFLTVPAGEE---GPDLDALEEVLKRE-----RPRFLYLIPSFQNPTGGLTPLPARKRLLQMV  192 (397)
T ss_dssp             EESCCHHHHHHHHTTCCEEEEEEEETT---EECHHHHHHHHHHC-----CCSCEEECCBSCTTTCCBCCHHHHHHHHHHH
T ss_pred             eCCCcHHHHHHHHHcCCEEEecCcCCC---CCCHHHHHHHHhhc-----CCeEEEECCCCcCCCCCcCCHHHHHHHHHHH
Confidence            999999999999999999999998753   58999999999862     578874 679999999999999999999999


Q ss_pred             HHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHh
Q 009517          300 KKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV  379 (533)
Q Consensus       300 ~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~  379 (533)
                      ++||+++|+||+|.++.+++. ...++..+..+.    ...+++++.||||++ | +|+|+||+++   ++++++.+...
T Consensus       193 ~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~----~~~~~i~~~s~sK~~-~-~G~r~G~~~~---~~~~~~~l~~~  262 (397)
T 2zyj_A          193 MERGLVVVEDDAYRELYFGEA-RLPSLFELAREA----GYPGVIYLGSFSKVL-S-PGLRVAFAVA---HPEALQKLVQA  262 (397)
T ss_dssp             HHHTCCEEEECTTTTCBCSSC-CCCCHHHHHHHH----TCCCEEEEEESTTTT-C-GGGCCEEEEC---CHHHHHHHHHH
T ss_pred             HHcCCEEEEeCCcccccCCCC-CCCchhhhCccc----CCCeEEEEecccccc-c-ccceeEEEec---CHHHHHHHHHH
Confidence            999999999999999988653 334555542110    003579999999999 7 8999999998   89999988776


Q ss_pred             hh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC-CceEecCCceeEEecccCC
Q 009517          380 AS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNS-LE-GITCNKAEGAMYLFPRIQL  456 (533)
Q Consensus       380 ~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~-g~~~~~~~gg~~~~~~~~~  456 (533)
                      .. .++++++++|.++..+|+..        .+ +++++++++++++++.+.+.|++ +| |+.++.|.+|+|+|++++.
T Consensus       263 ~~~~~~~~~~~~~~a~~~~l~~~--------~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~~~g~~~~~~~~~  333 (397)
T 2zyj_A          263 KQGADLHTPMLNQMLVHELLKEG--------FS-ERLERVRRVYREKAQAMLHALDREVPKEVRYTRPKGGMFVWMELPK  333 (397)
T ss_dssp             HHHHHSSCCHHHHHHHHHHHTTT--------HH-HHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECCCSBSSEEEEECST
T ss_pred             HHhhcCCCCHHHHHHHHHHHHhC--------CH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEccCCccEEEEEEcCC
Confidence            54 45677999999999998742        13 55677888899999999999987 57 6998888999999976641


Q ss_pred             CHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCC-CCCceEEEEec-CCcCcHHHHHHHHHHHHHHHHH
Q 009517          457 PEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQV-PGTWHFRCTIL-PQEDKIPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~-~g~~~iRis~~-~~~e~i~~~~~~l~~~l~~~~~  529 (533)
                        +         . +...++..++ ++||.+.||..|+.. .+.++|||+++ .++++|++++++|+++++++.+
T Consensus       334 --~---------~-~~~~~~~~l~-~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~~~  395 (397)
T 2zyj_A          334 --G---------L-SAEGLFRRAL-EENVAFVPGGPFFANGGGENTLRLSYATLDREGIAEGVRRLGRALKGLLA  395 (397)
T ss_dssp             --T---------C-CHHHHHHHHH-HTTEEEEESGGGCTTSCCTTEEEEECSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             --C---------C-CHHHHHHHHH-HCCCEEechHHhcCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence              1         1 2344555554 569999999988632 23459999998 5788999999999999988764

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=100.00  E-value=8.9e-43  Score=362.75  Aligned_cols=345  Identities=21%  Similarity=0.360  Sum_probs=275.1

Q ss_pred             ccccCCCcccHHHHHHHHHHHHhhcCCC--CCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHH-HhC
Q 009517          160 TGAYSHSQGIKGLRDTIAAGIEARDGFP--ADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA-LHG  236 (533)
Q Consensus       160 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~--~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~-~~g  236 (533)
                      ...|++..|..+||+++|+++++.+|..  +++++|++|+|+++++..++++++ ++||+|+++.|+|+++...+. ..|
T Consensus        76 ~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~G~~~ai~~~~~~~~-~~gd~Vl~~~p~y~~~~~~~~~~~g  154 (428)
T 1iay_A           76 IANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLA-DPGDAFLVPSPYYPAFNRDLRWRTG  154 (428)
T ss_dssp             HHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHC-CTTCEEEEESSCCTTHHHHTTTTTC
T ss_pred             hcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEEEccChHHHHHHHHHHhC-CCCCeEEEccCCCcchHHHHHHhcC
Confidence            4679998899999999999999888866  778999999999999999999998 899999999999999987554 679


Q ss_pred             CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEcccccccc
Q 009517          237 GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENV  316 (533)
Q Consensus       237 ~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~  316 (533)
                      ++++.++++.+++|++|++++++++++....++++++|++++||||||.+++.+++++|+++|++||+++|+||+|.++.
T Consensus       155 ~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~  234 (428)
T 1iay_A          155 VQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATV  234 (428)
T ss_dssp             CEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGC
T ss_pred             CEEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccc
Confidence            99999999766678999999999998754445579999999999999999999999999999999999999999999988


Q ss_pred             ccCCCCcccHHHHHhhc--CCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhccccCChHHHHHH
Q 009517          317 YVPEKKFHSFKKVSRSM--GYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILA  394 (533)
Q Consensus       317 ~~~~~~~~~~~~~~~~~--~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~  394 (533)
                      |++. .+.++..+....  .+..++ +++++.||||.+ |++|+|+||+++  .++++++.+.+.. ..+++++++|.++
T Consensus       235 ~~~~-~~~~~~~~~~~~~~~~~~~d-~viv~~s~sK~~-g~~Glr~G~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~a~  308 (428)
T 1iay_A          235 FDTP-QFVSIAEILDEQEMTYCNKD-LVHIVYSLSKDM-GLPGFRVGIIYS--FNDDVVNCARKMS-SFGLVSTQTQYFL  308 (428)
T ss_dssp             CSSS-CCCCHHHHHTSGGGTTSCTT-SEEEEEESTTTS-SCGGGCEEEEEE--SCHHHHHHHHHHH-TTSCCCHHHHHHH
T ss_pred             cCCC-CccCHHHhccccccccCCCC-cEEEEecchhhc-CCCCceEEEEEe--CCHHHHHHHHHHH-hcccCCHHHHHHH
Confidence            8653 344554543210  000123 689999999999 889999999987  2577888887654 3467899999999


Q ss_pred             HHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHH
Q 009517          395 SLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAF  474 (533)
Q Consensus       395 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (533)
                      ..+|++.     .  ...+++++++++++++++++.+.|+++ |+.++++++|+|+|++++....      .........
T Consensus       309 ~~~l~~~-----~--~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~  374 (428)
T 1iay_A          309 AAMLSDE-----K--FVDNFLRESAMRLGKRHKHFTNGLEVV-GIKCLKNNAGLFCWMDLRPLLR------ESTFDSEMS  374 (428)
T ss_dssp             HHHTTCH-----H--HHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBCCCSSSSEEEEECGGGCS------SSSHHHHHH
T ss_pred             HHHhcCh-----H--HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccCCCeeEEEEEechhhcC------CCchhHHHH
Confidence            9998642     1  122346778889999999999999998 8888888889999976641100      000001234


Q ss_pred             HHHHHHHccceEEEcCCCCCCCCCCceEEEEec-CCcCcHHHHHHHHHHHHHH
Q 009517          475 YCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-PQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       475 ~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~~~~l~~~l~~  526 (533)
                      ++..+++++||.+.||..|+. .+.++|||+++ .+++++++++++|++++++
T Consensus       375 l~~~l~~~~gi~v~~~~~~~~-~~~~~iRis~~~~~~e~i~~~~~~l~~~l~~  426 (428)
T 1iay_A          375 LWRVIINDVKLNVSPGSSFEC-QEPGWFRVCFANMDDGTVDIALARIRRFVGV  426 (428)
T ss_dssp             HHHHHHHTSCEECEEGGGGTC-SSSSEEEEECSSSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCEEEeCchhhCC-CCCCEEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence            555666666999999998873 23459999998 8999999999999988764

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=100.00  E-value=2.7e-44  Score=373.50  Aligned_cols=375  Identities=17%  Similarity=0.178  Sum_probs=284.7

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      ++..+.++...+ .         +|+|+.|.|+..                   .++.       |+.+++++.+.+...
T Consensus        21 ~~~~~~~l~~~~-~---------~i~l~~g~~~~~-------------------~~~~-------~~~~~~a~~~~~~~~   64 (422)
T 3d6k_A           21 VTAKYAELKAKN-L---------SLDLTRGKPSAE-------------------QLDL-------SNDLLSLPGGDFRTK   64 (422)
T ss_dssp             HHHHHHHHHHTT-C---------CEECCCCSCCHH-------------------HHHT-------TGGGGGCSTTCCBCT
T ss_pred             HHHHHHHHhccC-C---------eEeCCCCCCChh-------------------hCCC-------cHHHHHHHHHHHhhc
Confidence            556666666543 2         799999998610                   0021       445555554432111


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHH--HHHHHHhccCC------------CCeEEEc
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV--HMMMQLLIRSE------------NDGILCP  221 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al--~~~~~~l~~~~------------gd~Vlv~  221 (533)
                      .......|++..|..+||+++|++++      +++++|++|+|+++++  .++++.+. .+            +|+|+++
T Consensus        65 ~~~~~~~Y~~~~G~~~lr~~ia~~~~------~~~~~i~~t~G~~~al~l~~~~~~l~-~~~~~g~~~~~~~d~~~Vl~~  137 (422)
T 3d6k_A           65 DGVDCRNYGGLLGIADIRELWAEALG------LPADLVVAQDGSSLNIMFDLISWSYT-WGNNDSSRPWSAEEKVKWLCP  137 (422)
T ss_dssp             TCCBTTSSCCSSCCHHHHHHHHHHHT------CCGGGEEECSSCHHHHHHHHHHHHHH-HCCTTCSSCGGGSSCCEEEEE
T ss_pred             cchhhhCCCCCCCCHHHHHHHHHHhC------CChhHEEEecchHHHHHHHHHHHHhc-CcccccccccccCCCCEEEEe
Confidence            11125689999999999999999984      6789999999999997  67777776 44            3479999


Q ss_pred             CCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEE-EeCCCCCCccCCCHHHHHHHHHHHH
Q 009517          222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALV-VINPGNPTGQVLAEENQRAIVDFCK  300 (533)
Q Consensus       222 ~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~ii-l~~p~NPtG~~~s~~~l~~i~~l~~  300 (533)
                      +|+|++|...++..|++++.++++++   ++|+++|++++++.     ++++|+ +++||||||.+++.+++++|+++|+
T Consensus       138 ~p~y~~~~~~~~~~g~~~~~v~~~~~---g~d~~~l~~~l~~~-----~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~  209 (422)
T 3d6k_A          138 VPGYDRHFTITEHFGFEMINVPMTDE---GPDMGVVRELVKDP-----QVKGMWTVPVFGNPTGVTFSEQTCRELAEMST  209 (422)
T ss_dssp             ESCCHHHHHHHHHHTCEEEEEEEETT---EECHHHHHHHHTST-----TEEEEEECCSSCTTTCCCCCHHHHHHHHHCCC
T ss_pred             CCccHHHHHHHHHcCCEEEecCCCCC---CCCHHHHHHHHhcC-----CCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHh
Confidence            99999999999999999999999864   59999999999642     688888 5799999999999999999999999


Q ss_pred             -HcCCEEEEccccccccccC-CCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHH
Q 009517          301 -KEGLVLLADEVYQENVYVP-EKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYK  378 (533)
Q Consensus       301 -~~~~~lI~De~y~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~  378 (533)
                       +||++||+||+|..+.|.. +.++.++..+....   +...++|++.||||+.  ++|+|+||+++   ++++++.+..
T Consensus       210 ~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~S~SK~~--~~GlriG~~~~---~~~l~~~l~~  281 (422)
T 3d6k_A          210 AAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAA---GNPNRFWFMSSTSKIT--HAGSGVSFFAS---SKENIEWYAS  281 (422)
T ss_dssp             SSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHT---TCTTCEEEEEESTTTS--CTTSSCEEEEC---CHHHHHHHHH
T ss_pred             hccCCEEEEECCccccccCCCCCCCcChhhHhhcc---CCCCcEEEEcChhhhc--CcccceEEEEe---CHHHHHHHHH
Confidence             9999999999998633322 22344554432222   1234689999999973  58999999998   8999999988


Q ss_pred             hhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCceEecCCceeEEecc
Q 009517          379 VAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNS----LEGITCNKAEGAMYLFPR  453 (533)
Q Consensus       379 ~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~g~~~~~~~gg~~~~~~  453 (533)
                      ... .+++++.++|.++..+|++.       ..+.++++++++.++++++.+.+.|.+    ++++.++.|++|+|+|++
T Consensus       282 ~~~~~~~~~~~~~q~a~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~  354 (422)
T 3d6k_A          282 HANVRGIGPNKLNQLAHAQFFGDV-------AGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPTGGYFISVD  354 (422)
T ss_dssp             HHHHHCSCCCHHHHHHHHHHHCSH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCSBSSCEEEE
T ss_pred             HHHhhcCCCCHHHHHHHHHHHhCc-------chHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCCcceEEEEE
Confidence            765 56788999999999999741       124456677888888888888887765    334777889999999977


Q ss_pred             cCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEc-CCCCCCC--CCCceEEEEec-CCcCcHHHHHHHHHHHHHHHHH
Q 009517          454 IQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVP-GSGFGQV--PGTWHFRCTIL-PQEDKIPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~p-g~~f~~~--~g~~~iRis~~-~~~e~i~~~~~~l~~~l~~~~~  529 (533)
                      ++..             +... +.++|+++||.+.| |..|+..  .+.++||||++ .+++++++++++|+++++++.+
T Consensus       355 ~~~~-------------~~~~-~~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~~~  420 (422)
T 3d6k_A          355 VVPG-------------TASR-VVELAKEAGIALTGAGSSFPLHNDPNNENIRLAPSLPPVAELEVAMDGFATCVLMAAL  420 (422)
T ss_dssp             ESTT-------------CHHH-HHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCC-------------CHHH-HHHHHHHCCeEEEcCccccCCCCCCCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            6511             1223 34677889999999 5557411  23459999998 7999999999999999988765


Q ss_pred             H
Q 009517          530 K  530 (533)
Q Consensus       530 ~  530 (533)
                      +
T Consensus       421 ~  421 (422)
T 3d6k_A          421 E  421 (422)
T ss_dssp             T
T ss_pred             c
Confidence            3

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=100.00  E-value=1.8e-43  Score=368.78  Aligned_cols=346  Identities=19%  Similarity=0.324  Sum_probs=280.6

Q ss_pred             cccCCCcccHHHHHHHHHHHHhhcC--CCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHH-HhCC
Q 009517          161 GAYSHSQGIKGLRDTIAAGIEARDG--FPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA-LHGG  237 (533)
Q Consensus       161 ~~Y~~~~G~~~lr~aia~~~~~~~g--~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~-~~g~  237 (533)
                      ..|++..|..+||+++++++++.++  +++++++|++|+|+++|+..++++++ ++||+|+++.|+|+++...+. ..|.
T Consensus        80 ~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l~-~~gd~vl~~~p~~~~~~~~~~~~~g~  158 (435)
T 3piu_A           80 ALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLA-DPGEAVLIPTPYYPGFDRDLKWRTGV  158 (435)
T ss_dssp             HHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHC-CTTCEEEEEESCCTTHHHHTTTTTCC
T ss_pred             cccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHhc-CCCCeEEECCCccccHHHHHHHhcCC
Confidence            5799999999999999999986544  56778999999999999999999998 899999999999999998888 7899


Q ss_pred             eEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccc
Q 009517          238 TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY  317 (533)
Q Consensus       238 ~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~  317 (533)
                      +++.++.+++++|.+|+++|++++++....+.++++|++++|+||||.+++.+++++|+++|++||+++|+||+|.++.|
T Consensus       159 ~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~  238 (435)
T 3piu_A          159 EIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAF  238 (435)
T ss_dssp             EEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCC
T ss_pred             EEEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEecccccccc
Confidence            99999998877788999999999988666666899999999999999999999999999999999999999999999988


Q ss_pred             cCCCCcccHHHHHhhcCCCCC----CceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhccccCChHHHHH
Q 009517          318 VPEKKFHSFKKVSRSMGYGEK----DISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQIL  393 (533)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~----~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a  393 (533)
                      ++. .+.++..+..+.. .+.    ..+++++.||||++ |++|+|+||+++  .++++++.+.+.. .+++.+++.|.+
T Consensus       239 ~~~-~~~~~~~~~~~~~-~d~~~~~~~~~i~i~s~sK~~-g~~G~r~G~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~  312 (435)
T 3piu_A          239 SSP-SFISVMEVLKDRN-CDENSEVWQRVHVVYSLSKDL-GLPGFRVGAIYS--NDDMVVAAATKMS-SFGLVSSQTQHL  312 (435)
T ss_dssp             SSS-CCCCHHHHHHC--------CGGGGEEEEEESSSSS-CCGGGCEEEEEE--SCHHHHHHHHHHG-GGSCCCHHHHHH
T ss_pred             CCC-CCcCHHHhccccc-cccccCCCCCEEEEEeeeccc-CCCceeEEEEEe--CCHHHHHHHHHHh-hcCCCCHHHHHH
Confidence            763 4556555543210 010    23678999999999 889999999987  2566777776554 345678899999


Q ss_pred             HHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChH
Q 009517          394 ASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDA  473 (533)
Q Consensus       394 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (533)
                      +..+|.+..       ...+++++++++++++++.+.+.|+++ |+.+..+++|+|+|++++....      ........
T Consensus       313 ~~~~l~~~~-------~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~l~~~~~------~~~~~~~~  378 (435)
T 3piu_A          313 LSAMLSDKK-------LTKNYIAENHKRLKQRQKKLVSGLQKS-GISCLNGNAGLFCWVDMRHLLR------SNTFEAEM  378 (435)
T ss_dssp             HHHHHHCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHTT-TCEECCCCSSSEEEEECGGGSS------SSSHHHHH
T ss_pred             HHHHhcChH-------HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccCCCeeEEEEEEcccccc------cCCchhHH
Confidence            888886321       113345778888999999999999998 9999999999999976641100      00000134


Q ss_pred             HHHHHHHHccceEEEcCCCCCCCCCCceEEEEecC-CcCcHHHHHHHHHHHHHHHH
Q 009517          474 FYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILP-QEDKIPAIVTRLTDFHKNFM  528 (533)
Q Consensus       474 ~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~-~~e~i~~~~~~l~~~l~~~~  528 (533)
                      .++.++++++||.+.||..|+ ..+.++|||+++. ++++|++++++|+++++++.
T Consensus       379 ~~~~~l~~~~gi~v~~g~~~~-~~~~~~iRi~~~~~~~e~i~~~l~~l~~~l~~~~  433 (435)
T 3piu_A          379 ELWKKIVYEVHLNISPGSSCH-CTEPGWFRVCFANLPERTLDLAMQRLKAFVGEYY  433 (435)
T ss_dssp             HHHHHHHHTSCEECEEGGGGT-CSSTTEEEEECSSSCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHCCEEEeCCcccC-CCCCCEEEEEeeCCCHHHHHHHHHHHHHHHHHHh
Confidence            556677777799999999997 3455699999984 89999999999999988764

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=100.00  E-value=1.3e-43  Score=363.29  Aligned_cols=366  Identities=22%  Similarity=0.346  Sum_probs=291.2

Q ss_pred             CcccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCC
Q 009517           62 NPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFS  141 (533)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p  141 (533)
                      ++++..++.+++..+...+..     .+         +|||+.|.|..                      +.       |
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~-----~~---------~i~l~~~~~~~----------------------~~-------~   40 (381)
T 1v2d_A            4 HPRTEAAKESIFPRMSGLAQR-----LG---------AVNLGQGFPSN----------------------PP-------P   40 (381)
T ss_dssp             CGGGGGC---CHHHHHHHHHH-----HT---------CEECCCCSCSS----------------------CC-------C
T ss_pred             hhhhhhcCccHHHHHHHHHhc-----CC---------eEEecCCCCCC----------------------CC-------C
Confidence            445666665554443333322     34         89999999864                      21       6


Q ss_pred             HHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEc
Q 009517          142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCP  221 (533)
Q Consensus       142 ~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~  221 (533)
                      +.+.+++.+++.+     ...|++..|..+||++++++++      +++++|++|+|+++++..+++.+. ++||+|+++
T Consensus        41 ~~v~~a~~~~~~~-----~~~y~~~~~~~~l~~~la~~~~------~~~~~v~~~~g~~~a~~~~~~~~~-~~gd~Vl~~  108 (381)
T 1v2d_A           41 PFLLEAVRRALGR-----QDQYAPPAGLPALREALAEEFA------VEPESVVVTSGATEALYVLLQSLV-GPGDEVVVL  108 (381)
T ss_dssp             HHHHHHHHHHTTT-----SCSCCCTTCCHHHHHHHHHHHT------SCGGGEEEESSHHHHHHHHHHHHC-CTTCEEEEE
T ss_pred             HHHHHHHHHHHHH-----hcCCCCCCCCHHHHHHHHHhcC------CChhhEEEcCChHHHHHHHHHHhC-CCCCEEEEc
Confidence            8888888888764     2368888889999999999974      567899999999999999999998 899999999


Q ss_pred             CCcCcchHHHHHHhCCeEEEEecC--CCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHH
Q 009517          222 IPQYPLYSASIALHGGTLVPYYLD--EATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC  299 (533)
Q Consensus       222 ~p~~~~~~~~~~~~g~~~~~v~~~--~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~  299 (533)
                      +|+|+.+...++..|.+++.++++  ++ ++.+|+++|++++++      ++++|++++|+||||.+++.+++++|+++|
T Consensus       109 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~-~~~~d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~l~~i~~~~  181 (381)
T 1v2d_A          109 EPFFDVYLPDAFLAGAKARLVRLDLTPE-GFRLDLSALEKALTP------RTRALLLNTPMNPTGLVFGERELEAIARLA  181 (381)
T ss_dssp             ESCCTTHHHHHHHTTCEEEEEECEEETT-EEECCHHHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHH
T ss_pred             CCCchhHHHHHHHcCCEEEEEeCCCCCc-cCCcCHHHHHHhcCc------CCEEEEECCCCCCCCCccCHHHHHHHHHHH
Confidence            999999999999999999999986  33 478999999998865      799999999999999999999999999999


Q ss_pred             HHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHh
Q 009517          300 KKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV  379 (533)
Q Consensus       300 ~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~  379 (533)
                      ++||+++|+||+|.++.+ |. ...++..+   .    . ..++++.||||.+ |++|+|+||+++   ++++++.+...
T Consensus       182 ~~~~~~li~De~~~~~~~-g~-~~~~~~~~---~----~-~~~~~~~s~sK~~-~~~G~r~G~~~~---~~~~~~~~~~~  247 (381)
T 1v2d_A          182 RAHDLFLISDEVYDELYY-GE-RPRRLREF---A----P-ERTFTVGSAGKRL-EATGYRVGWIVG---PKEFMPRLAGM  247 (381)
T ss_dssp             HHTTCEEEEECTTTTCBS-SS-CCCCHHHH---C----T-TTEEEEEEHHHHT-TCGGGCCEEEEC---CTTTHHHHHHH
T ss_pred             HHcCCEEEEEcCcccccc-CC-CCCCHHHh---c----C-CCEEEEeechhhc-CCcccceEEEEe---CHHHHHHHHHH
Confidence            999999999999999887 42 33444443   1    1 2468899999998 789999999998   88888888776


Q ss_pred             hh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCH
Q 009517          380 AS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPE  458 (533)
Q Consensus       380 ~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~  458 (533)
                      .. .+++++++.|.++..+|+..        .+.+++++++++++++++++.+.|++. |+.++.+++++|+|++++  .
T Consensus       248 ~~~~~~~~~~~~~~a~~~~l~~~--------~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~--~  316 (381)
T 1v2d_A          248 RQWTSFSAPTPLQAGVAEALKLA--------RREGFYEALREGYRRRRDLLAGGLRAM-GLRVYVPEGTYFLMAELP--G  316 (381)
T ss_dssp             HHHHTSSCCHHHHHHHHHHHHHH--------HHTTHHHHHHHHHHHHHHHHHHHHHHT-TCCEECCSBSSEEEEECT--T
T ss_pred             HhhcccCCCcHHHHHHHHHHhCc--------ccHHHHHHHHHHHHHHHHHHHHHHHHC-CCEecCCCcceEEEEecC--h
Confidence            54 56788999998888887421        012446778888999999999999996 999999999999997654  1


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCC-CCCceEEEEecCCcCcHHHHHHHHHHHHHHHHH
Q 009517          459 KAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQV-PGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~-~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~~~  529 (533)
                                .  +   +..+++++||.+.||..|+.. .+.++|||+++.++++|++++++|++++++.++
T Consensus       317 ----------~--~---~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~~~~~i~~~~~~l~~~l~~~r~  373 (381)
T 1v2d_A          317 ----------W--D---AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGRVVNSPRE  373 (381)
T ss_dssp             ----------C--C---HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCSCHHHHHHHHHHHHHHC-----
T ss_pred             ----------H--h---HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHhhccc
Confidence                      1  1   446778899999999988741 234599999988888999999999999887654

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=100.00  E-value=7.7e-44  Score=371.03  Aligned_cols=339  Identities=15%  Similarity=0.221  Sum_probs=275.5

Q ss_pred             HHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCC---EEEcCChHHHHHHHHHHhccCCCCeEEEc
Q 009517          145 IERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPND---IFLTDGASPAVHMMMQLLIRSENDGILCP  221 (533)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~---i~~t~G~~~al~~~~~~l~~~~gd~Vlv~  221 (533)
                      ++++.+++...   ....|++..|..+||+++|+++.+.+ ..+++++   |++|+|+++|+..+++.++ ++||+|+++
T Consensus        69 ~~a~~~~~~~~---~~~~y~~~~g~~~lr~~ia~~~~~~~-~~~~~~~~~~i~~t~g~~~al~~~~~~l~-~~gd~Vl~~  143 (430)
T 2x5f_A           69 LDAMFNDLTPD---EIFPYAPPQGIEELRDLWQQKMLRDN-PELSIDNMSRPIVTNALTHGLSLVGDLFV-NQDDTILLP  143 (430)
T ss_dssp             HHTTBSSCCGG---GTSSCCCTTCCHHHHHHHHHHHHHHC-TTCCGGGBCCCEEESHHHHHHHHHHHHHC-CTTCEEEEE
T ss_pred             HHHHHHhcCcc---cccccCCCCCCHHHHHHHHHHHhccC-cccCCCccceEEEcCCchHHHHHHHHHHh-CCCCEEEEc
Confidence            55554444320   25679998899999999999998764 6677888   9999999999999999998 899999999


Q ss_pred             CCcCcchHHHHHH-hCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHH
Q 009517          222 IPQYPLYSASIAL-HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (533)
Q Consensus       222 ~p~~~~~~~~~~~-~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~  300 (533)
                      +|+|+++...++. .|++++.+++++++ |++|+++|++++++.   +.++++|++++||||||.+++.+++++|+++|+
T Consensus       144 ~p~y~~~~~~~~~~~g~~~~~~~~~~~~-~~~d~~~l~~~l~~~---~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~  219 (430)
T 2x5f_A          144 EHNWGNYKLVFNTRNGANLQTYPIFDKD-GHYTTDSLVEALQSY---NKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIK  219 (430)
T ss_dssp             SSCCTHHHHHHTTTTCCEEEEECCBCTT-SCBCSHHHHHHHHHC---CSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHH
T ss_pred             CCcCccHHHHHHHhcCCeEEEEeccCcc-CCcCHHHHHHHHHhc---CCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHH
Confidence            9999999999999 99999999987643 789999999999762   236899999999999999999999999999999


Q ss_pred             H-----cCCEEEEccccccccccCCCCcccHH-HHHhhcCCCCCC-ceEEEEecCCccCCCCCCCeeEEEEEecCCHHHH
Q 009517          301 K-----EGLVLLADEVYQENVYVPEKKFHSFK-KVSRSMGYGEKD-ISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVR  373 (533)
Q Consensus       301 ~-----~~~~lI~De~y~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~  373 (533)
                      +     ||+++|+||+|.++.+++. ++.++. .+. +.   .++ +.+|++.||||.+ |++|+|+||+++.+.+++++
T Consensus       220 ~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~-~~---~~~~~~~i~~~s~sK~~-~~~G~riG~~~~~~~~~~~~  293 (430)
T 2x5f_A          220 ALANKGTKVIAVVDDAYYGLFYEDV-YTQSLFTALT-NL---HSNAILPIRLDGATKEF-FAWGFRVGFMTFGTSDQTTK  293 (430)
T ss_dssp             HHHHTTCEEEEEEECTTTTCBCSSS-CCSCHHHHHH-TT---CCTTEEEEEEEEHHHHT-TCGGGCCEEEEEBCCCHHHH
T ss_pred             hhhhccCCEEEEEehhcccccCCcc-cchHHHHHHh-hc---cCCcceEEEEEecccCC-CCCCCCeEEEEEecCCHHHH
Confidence            9     9999999999999988653 344544 331 11   111 1279999999999 88999999998633378888


Q ss_pred             HHHHHhhh-----ccccCChHHHHHHHHHcC-CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCceEec
Q 009517          374 EQIYKVAS-----VNLCSNISGQILASLVMS-PPKVGDESYESYCAERDGILSSLARRAKTLEDAFN----SLEGITCNK  443 (533)
Q Consensus       374 ~~l~~~~~-----~~~~~~~~~q~a~~~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~~g~~~~~  443 (533)
                      +.+.....     .++++++++|.++..+|+ +.        .+.+++++++++++++++.+.+.|+    +. |+.+..
T Consensus       294 ~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--------~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-g~~~~~  364 (430)
T 2x5f_A          294 EVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNK--------QFDKEIEQNIQTLKERYEVTKEVVYADQYHS-HWQAYD  364 (430)
T ss_dssp             HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCH--------HHHHHHHHHHHHHHHHHHHHHHHHTCGGGTT-TEEECC
T ss_pred             HHHHHHHhhhhhcccCCCChHHHHHHHHHHccCh--------HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CceeeC
Confidence            88876543     457889999999999885 42        2555667789999999999999998    56 889999


Q ss_pred             CCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec-CCcCcHHHHHHHHHH
Q 009517          444 AEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-PQEDKIPAIVTRLTD  522 (533)
Q Consensus       444 ~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~~~~l~~  522 (533)
                      +++|+|+|++++ .           . +...++..+++++||.+.||       +.++|||+++ .++++|++++++|++
T Consensus       365 ~~~g~~~~~~~~-~-----------~-~~~~~~~~l~~~~gi~v~~g-------~~~~iRis~~~~~~e~i~~~~~~l~~  424 (430)
T 2x5f_A          365 FNSGYFMAIKVH-D-----------V-DPEALRKHLIDKYSIGVIAL-------NATDIRIAFSCVEKDDIPHVFDSIAK  424 (430)
T ss_dssp             CCBSSEEEEEES-S-----------S-CHHHHHHHHHHHHCEECEEC-------SSSEEEEEGGGSCGGGHHHHHHHHHH
T ss_pred             CCceEEEEeCCC-C-----------C-CHHHHHHHHHHhCCEEEecC-------CCCeEEEEEecCCHHHHHHHHHHHHH
Confidence            999999997765 1           1 23455556665589999997       2238999998 889999999999999


Q ss_pred             HHHHH
Q 009517          523 FHKNF  527 (533)
Q Consensus       523 ~l~~~  527 (533)
                      +++++
T Consensus       425 ~l~~~  429 (430)
T 2x5f_A          425 AIDDL  429 (430)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            98764

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=100.00  E-value=5.7e-44  Score=371.66  Aligned_cols=328  Identities=16%  Similarity=0.190  Sum_probs=267.1

Q ss_pred             CccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHH--HHHHHHhccC--C----------CCeEEEcCCc
Q 009517          159 ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV--HMMMQLLIRS--E----------NDGILCPIPQ  224 (533)
Q Consensus       159 ~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al--~~~~~~l~~~--~----------gd~Vlv~~p~  224 (533)
                      ....|++..|..+||+++|++++      +++++|++|+|+++++  ..+++.++ +  +          ||+|++++|+
T Consensus        70 ~~~~Y~~~~g~~~lr~~ia~~~~------~~~~~i~~t~G~~~al~~~~~~~~l~-~~~~g~~~~~~~~~gd~V~v~~p~  142 (427)
T 3ppl_A           70 DVRNYGGLDGIVDIRQIWADLLG------VPVEQVLAGDASSLNIMFDVISWSYI-FGNNDSVQPWSKEETVKWICPVPG  142 (427)
T ss_dssp             BTTSSCCSSCCHHHHHHHHHHHT------SCGGGEEECSSCHHHHHHHHHHHHHH-HCCTTCSSCGGGSSCCEEEEEESC
T ss_pred             hhcCCCCCCCcHHHHHHHHHHhC------CCcceEEEeCCcHHHHHHHHHHHHHh-ccCCcccccccCCCCCEEEEcCCC
Confidence            36789999999999999999984      7789999999999999  58888877 5  5          8999999999


Q ss_pred             CcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEe-CCCCCCccCCCHHHHHHHHHHH-HHc
Q 009517          225 YPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLAEENQRAIVDFC-KKE  302 (533)
Q Consensus       225 ~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~-~p~NPtG~~~s~~~l~~i~~l~-~~~  302 (533)
                      |..|...++..|++++.+|++++   ++|++.|+++++.     +++++|+++ +||||||.+++.+++++|+++| ++|
T Consensus       143 y~~~~~~~~~~g~~~~~v~~~~~---g~d~~~l~~~l~~-----~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~  214 (427)
T 3ppl_A          143 YDRHFSITERFGFEMISVPMNED---GPDMDAVEELVKN-----PQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAP  214 (427)
T ss_dssp             CHHHHHHHHHTTCEEEEEEEETT---EECHHHHHHHTTS-----TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSST
T ss_pred             cHHHHHHHHHcCCEEEEeCCCCC---CCCHHHHHHHHhc-----CCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcC
Confidence            99999999999999999999864   5999999999853     278999877 8899999999999999999999 999


Q ss_pred             CCEEEEccccccccccCCC-CcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh
Q 009517          303 GLVLLADEVYQENVYVPEK-KFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS  381 (533)
Q Consensus       303 ~~~lI~De~y~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~  381 (533)
                      |++||+||+|.++.|++.. +..++..+....   +...++|++.||||++  ++|+|+||+++   ++++++.+.....
T Consensus       215 ~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~S~SK~~--~~G~r~G~~~~---~~~l~~~~~~~~~  286 (427)
T 3ppl_A          215 DFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAA---GNPNRFWAFTSTSKIT--LAGAGVSFFLT---SAENRKWYTGHAG  286 (427)
T ss_dssp             TCEEEEECTTTTCBSSSCCCCCCCHHHHHHHT---TCTTSEEEEEESTTTS--CTTSSCEEEEC---CHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcccccCCCCCCccchhhhhhcc---CCCCcEEEEechhhcc--CcCccEEEEEc---CHHHHHHHHHHhh
Confidence            9999999999998887642 234555543221   1234689999999974  58999999998   9999999988765


Q ss_pred             -ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCceEecCCceeEEecccCC
Q 009517          382 -VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNS----LEGITCNKAEGAMYLFPRIQL  456 (533)
Q Consensus       382 -~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~g~~~~~~~gg~~~~~~~~~  456 (533)
                       .+++++++.|.++..+|++.       ..+.++++++++.++++++.+.+.|.+    ++++.+..|++|+|+|++++.
T Consensus       287 ~~~~~~~~~~q~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~  359 (427)
T 3ppl_A          287 IRGIGPNKVNQLAHARYFGDA-------EGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVP  359 (427)
T ss_dssp             HHCSCCCHHHHHHHHHHHCSH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSBSSCEEEECST
T ss_pred             cccCCCCHHHHHHHHHHHhCh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCccEEEEEECCc
Confidence             67889999999999998741       124455677888888888888877755    336888899999999977651


Q ss_pred             CHHHHHHHHhcCCCChHHHHHHHHHccceEEEc-CCCCCC--CCCCceEEEEec-CCcCcHHHHHHHHHHHHHHHHHH
Q 009517          457 PEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVP-GSGFGQ--VPGTWHFRCTIL-PQEDKIPAIVTRLTDFHKNFMDK  530 (533)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~p-g~~f~~--~~g~~~iRis~~-~~~e~i~~~~~~l~~~l~~~~~~  530 (533)
                      .             +...+ .+.|.++||.+.| |..|+.  ..+.++|||+++ .++++|++++++|++++++...+
T Consensus       360 ~-------------~~~~~-~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~~~~~i~~~~~~l~~~l~~~~~~  423 (427)
T 3ppl_A          360 G-------------TASRV-AELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLPPVEELEVAMDGVATCVLLAAAE  423 (427)
T ss_dssp             T-------------CHHHH-HHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             c-------------hHHHH-HHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            1             23333 3567789999999 556642  134569999998 58899999999999999987654

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=100.00  E-value=2.1e-43  Score=365.58  Aligned_cols=384  Identities=15%  Similarity=0.131  Sum_probs=291.7

Q ss_pred             CcccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCC-cCCCCCCchHHHHHHhhcCCCCCCCcccccCCC
Q 009517           62 NPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNP-QSLGQQPITFFREVLALCDHPSILDRSETQGLF  140 (533)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p-~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~  140 (533)
                      .+++...+++++..+...+.+.  .+++         +|||+.|.| +..+.                         ..+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~--~~~~---------~i~l~~g~~~~~~~~-------------------------~~~   49 (412)
T 1ajs_A            6 FAEVPQAQPVLVFKLIADFRED--PDPR---------KVNLGVGAYRTDDCQ-------------------------PWV   49 (412)
T ss_dssp             TTTCCCCCCCHHHHHHHHHHTC--CCTT---------CEECCSCCCCCTTSC-------------------------CCC
T ss_pred             hhhCcccCCchHHHHHHHHhhc--CCCC---------ceeeccceecCCCCC-------------------------ccc
Confidence            3455566666655555444432  1223         999999997 32111                         012


Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEE--cCChHHHHHHHHH--HhccCCC-
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFL--TDGASPAVHMMMQ--LLIRSEN-  215 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~--t~G~~~al~~~~~--~l~~~~g-  215 (533)
                      ++.+.+++.+.+.+. . ....|.+..|..+||+++++++.+.+|..+++++|++  |+|+++|+..+++  .++ .+| 
T Consensus        50 ~~~v~~a~~~~~~~~-~-~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~-~~g~  126 (412)
T 1ajs_A           50 LPVVRKVEQRIANNS-S-LNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARW-YNGT  126 (412)
T ss_dssp             CHHHHHHHHHHHTCT-T-CCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHH-SSSS
T ss_pred             cHHHHHHHHHhhhCh-h-hccCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCCcHHHHHHHHHHHHHh-CcCc
Confidence            577888887776331 1 2567989999999999999999766665567899999  9999999999965  344 689 


Q ss_pred             ----CeEEEcCCcCcchHHHHHHhCCe-EEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHH
Q 009517          216 ----DGILCPIPQYPLYSASIALHGGT-LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE  290 (533)
Q Consensus       216 ----d~Vlv~~p~~~~~~~~~~~~g~~-~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~  290 (533)
                          |+|+++.|+|++|...++..|.+ ++.++++.+++|++|++++++++++.   ++++++|++++||||||.+++.+
T Consensus       127 ~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~v~~~~p~nptG~~~~~~  203 (412)
T 1ajs_A          127 NNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENA---PEFSIFVLHACAHNPTGTDPTPE  203 (412)
T ss_dssp             SCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHS---CTTCEEEEESSSCTTTCCCCCHH
T ss_pred             CCCCCeEEEcCCCcHHHHHHHHHcCCceeEEEeeecCCCCccCHHHHHHHHHhC---CCCcEEEEECCCCCCCCCCCCHH
Confidence                99999999999999999999999 99999865457889999999999762   23577888899999999999999


Q ss_pred             HHHHHHHHHHHcCCEEEEccccccccccCC-CCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCC
Q 009517          291 NQRAIVDFCKKEGLVLLADEVYQENVYVPE-KKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFS  369 (533)
Q Consensus       291 ~l~~i~~l~~~~~~~lI~De~y~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~  369 (533)
                      ++++|+++|++||+++|+||+|+++.+++. ....++..+..      ...++|++.||||.+ |++|+|+||+++...+
T Consensus       204 ~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~s~sK~~-~~~G~riG~~~~~~~~  276 (412)
T 1ajs_A          204 QWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVS------EGFELFCAQSFSKNF-GLYNERVGNLTVVAKE  276 (412)
T ss_dssp             HHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHH------TTCCEEEEEECTTTS-CCGGGCEEEEEEECSS
T ss_pred             HHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhc------cCCcEEEEEeccccc-CCCCcceEEEEEecCC
Confidence            999999999999999999999999887541 01233333321      122579999999999 7889999999862225


Q ss_pred             HH----HHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CceE
Q 009517          370 AE----VREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLE---GITC  441 (533)
Q Consensus       370 ~~----~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---g~~~  441 (533)
                      ++    +++.+..... .+.++++++|.++..+|+..    ..+..|.+++++++++++++++++.+.|+++.   ++.+
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~  352 (412)
T 1ajs_A          277 PDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDP----ELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNH  352 (412)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHH
T ss_pred             HHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHcCc----chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeE
Confidence            65    4555555343 33446999999999888631    11223445678889999999999999999883   3888


Q ss_pred             ecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec-CCcCcHHHHHHHH
Q 009517          442 NKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-PQEDKIPAIVTRL  520 (533)
Q Consensus       442 ~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~~~~l  520 (533)
                      ..+++++|+|++++                 ..++..+++++||.+.||           +||+++ .+++++++++++|
T Consensus       353 ~~~~~~~~~~~~~~-----------------~~~~~~~l~~~gv~v~~~-----------~Ris~~~~~~~~i~~~~~~l  404 (412)
T 1ajs_A          353 ITDQIGMFSFTGLN-----------------PKQVEYLINQKHIYLLPS-----------GRINMCGLTTKNLDYVATSI  404 (412)
T ss_dssp             HHHCCSSEEECCCC-----------------HHHHHHHHHTTCEECCTT-----------SEEEGGGCCTTTHHHHHHHH
T ss_pred             EcCCCceEEEeCCC-----------------HHHHHHHHHhCCEEecCC-----------cEEEeeeCCHHHHHHHHHHH
Confidence            88999999996543                 123557788899999973           499998 6999999999999


Q ss_pred             HHHHHH
Q 009517          521 TDFHKN  526 (533)
Q Consensus       521 ~~~l~~  526 (533)
                      ++++++
T Consensus       405 ~~~l~~  410 (412)
T 1ajs_A          405 HEAVTK  410 (412)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998865

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=100.00  E-value=3.7e-44  Score=370.97  Aligned_cols=372  Identities=17%  Similarity=0.151  Sum_probs=278.2

Q ss_pred             cccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCC-cCCCCCCchHHHHHHhhcCCCCCCCcccccCCCC
Q 009517           63 PKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNP-QSLGQQPITFFREVLALCDHPSILDRSETQGLFS  141 (533)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p-~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p  141 (533)
                      +++...+++   +++.....++....        +++|+|++|.| +.                      +.       |
T Consensus        18 ~~~~~~~~~---~i~~~~~~~~~~~~--------~~~i~l~~g~~~d~----------------------~~-------~   57 (409)
T 4eu1_A           18 GPGSMGKPD---PILGLGQDFRMDPA--------KRKVNLSIGVYRDD----------------------AD-------Q   57 (409)
T ss_dssp             ------------CHHHHHHHHHHCCC--------SSCEECCCSSCCCT----------------------TS-------C
T ss_pred             hcCCCCCCC---hHHHHHHHHhhCCC--------cCceeeeeeEEECC----------------------CC-------C
Confidence            345555554   46677777765322        24999999998 53                      11       2


Q ss_pred             HHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEE--EcCChHHHHHHHHH---HhccCCCC
Q 009517          142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIF--LTDGASPAVHMMMQ---LLIRSEND  216 (533)
Q Consensus       142 ~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~--~t~G~~~al~~~~~---~l~~~~gd  216 (533)
                      +.+.+++.++...    ....|.+..|..+||+++++++.+..+.++++++|.  .+.|+++++..+..   .+. ++||
T Consensus        58 ~~v~~a~~~a~~~----~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~~~~-~~gd  132 (409)
T 4eu1_A           58 PFVLECVKQATLG----TNMDYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRFV-ANCN  132 (409)
T ss_dssp             CCCCHHHHTCCCC----SCCCCCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGGGTS-SSCC
T ss_pred             EeecHHHHhcCcc----ccccCCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccchHHHHHHHHHHHHhc-CCCC
Confidence            3344454444221    467899999999999999999854332223367884  58999999887644   344 6899


Q ss_pred             eEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHH
Q 009517          217 GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIV  296 (533)
Q Consensus       217 ~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~  296 (533)
                      +|++++|+|.+|...++..|++++.+++..+++|++|+++|++++++.   ..+++++++++||||||.+++.+++++|+
T Consensus       133 ~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~i~~~~p~NPtG~~~~~~~l~~i~  209 (409)
T 4eu1_A          133 RIYGPDVGYPNHESIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKA---PEGSVILVHACAHNPTGVDPTHDDWRQVC  209 (409)
T ss_dssp             EEEEESSCCTHHHHHHHHTTCEEEEECCEETTTTEECHHHHHHHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHH
T ss_pred             EEEEeCCCcHhHHHHHHHcCCeEEEEEeecCcCCcCcHHHHHHHHHhC---CCCcEEEEECCCCCCCCCCCCHHHHHHHH
Confidence            999999999999999999999999999865567899999999999752   11456677789999999999999999999


Q ss_pred             HHHHHcCCEEEEccccccccccCCC-CcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEE--EEecCCHH--
Q 009517          297 DFCKKEGLVLLADEVYQENVYVPEK-KFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYM--EVTGFSAE--  371 (533)
Q Consensus       297 ~l~~~~~~~lI~De~y~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v--~~~~~~~~--  371 (533)
                      ++|++||+++|+||+|+++.+++.. ...++..+. +     ...++|+++||||++ |++|+|+||+  ++  .+++  
T Consensus       210 ~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~-~-----~~~~~i~~~S~SK~~-g~~G~riG~~~~v~--~~~~~~  280 (409)
T 4eu1_A          210 DVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLV-D-----MVPNLIVAQSFSKNF-GLYGHRCGALHIST--ASAEEA  280 (409)
T ss_dssp             HHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHH-T-----TSSCCEEEEECTTTS-SCGGGCCEEEEEEC--SSHHHH
T ss_pred             HHHHhCCcEEEEeccccccccCCcccchHHHHHHH-h-----hCCcEEEEecCcccc-cCccCCceEEEEEe--CCHHHH
Confidence            9999999999999999998885410 112332321 1     223578999999999 8999999997  43  3677  


Q ss_pred             --HHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----ceEecC
Q 009517          372 --VREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEG----ITCNKA  444 (533)
Q Consensus       372 --~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g----~~~~~~  444 (533)
                        +++.+..... .+.+++.++|.++..+|+++    ...+.|.+++++++++++++++++.+.|+++ |    +.+..|
T Consensus       281 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~  355 (409)
T 4eu1_A          281 KRLVSQLALLIRPMYNNPPLYGAWVVSSILKDP----QLTALWKKELKQMSSRIAEVRKRLVSELKAC-GSVHDWSHIER  355 (409)
T ss_dssp             HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCSCCHHHHH
T ss_pred             HHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCcceecC
Confidence              6666666554 56778899999999888642    2334566778889999999999999999987 4    788889


Q ss_pred             CceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec-CCcCcHHHHHHHHHHH
Q 009517          445 EGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-PQEDKIPAIVTRLTDF  523 (533)
Q Consensus       445 ~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~~~~l~~~  523 (533)
                      ++++|+|++++                 ..++..+++++||.+.||           .||+++ .++++|++++++|+++
T Consensus       356 ~~~~~~~~~~~-----------------~~~~~~ll~~~gv~v~p~-----------~Ri~~~~~~~~~i~~~~~~l~~~  407 (409)
T 4eu1_A          356 QVGMMAYTGLT-----------------REQVELLRSEYHIYMTLN-----------GRAAVSGLNSTNVEYVSQAIHNV  407 (409)
T ss_dssp             SCSSEEECCCC-----------------HHHHHHHHHHHCEECCTT-----------CEEEGGGCCTTTHHHHHHHHHHH
T ss_pred             CceEEEEeCCC-----------------HHHHHHHHHcCCEEEcCC-----------CEEEEEecCHhhHHHHHHHHHHH
Confidence            99999996543                 123567788889999984           289997 7888899999999887


Q ss_pred             H
Q 009517          524 H  524 (533)
Q Consensus       524 l  524 (533)
                      +
T Consensus       408 l  408 (409)
T 4eu1_A          408 T  408 (409)
T ss_dssp             H
T ss_pred             h
Confidence            5

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=100.00  E-value=1.4e-43  Score=365.44  Aligned_cols=382  Identities=21%  Similarity=0.301  Sum_probs=282.1

Q ss_pred             cCcccccCcc-ccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCC
Q 009517           61 LNPKVLKCEY-AVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGL  139 (533)
Q Consensus        61 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~  139 (533)
                      +++++..+++ ..+..+..+........ .+      +++|+|+.|.++.                      +.      
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~i~l~~~~~~~----------------------~~------   47 (400)
T 3asa_A            3 RNPHFVSLTKNYLFADLQKRVAQFRLEN-PQ------HTVINLSIGDTTQ----------------------PL------   47 (400)
T ss_dssp             CCHHHHTCCCCCHHHHHHHHHHHHHHHC-TT------SCCEECSSCCCCC----------------------CC------
T ss_pred             cchhhhccCCcccHHHHHHHHHHhhhhc-CC------CceEeccCCCCCC----------------------CC------
Confidence            3566666654 33555555555544321 11      2399999998763                      21      


Q ss_pred             CCHHHHHHHHHHHhcCCC-CCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeE
Q 009517          140 FSADSIERAWQILDQIPG-RATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI  218 (533)
Q Consensus       140 ~p~~v~~~~~~~~~~~~~-~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~V  218 (533)
                       |+.+++++.+++..... .....|++..|..+||+++++++.  +|. +++++|++|+|+++++..++.. + .+||+|
T Consensus        48 -~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~--~g~-~~~~~v~~~~G~~~al~~~~~~-~-~~gd~V  121 (400)
T 3asa_A           48 -NASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFY--RGF-VDAKEIFISDGAKVDLFRLLSF-F-GPNQTV  121 (400)
T ss_dssp             -CHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTS--TTS-SCGGGEEEESCHHHHHHHHHHH-H-CSSCEE
T ss_pred             -CHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHH--cCC-CCHHHEEEccChHHHHHHHHHH-c-CCCCEE
Confidence             68888888887764211 024579888899999999999974  454 6788999999999999997755 4 689999


Q ss_pred             EEcCCcCcchHHHHHHhCCe-EEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHH
Q 009517          219 LCPIPQYPLYSASIALHGGT-LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD  297 (533)
Q Consensus       219 lv~~p~~~~~~~~~~~~g~~-~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~  297 (533)
                      +++.|+|+++...++..|.+ ++.+++++++++..|++.+     +      ++++|++++||||||.+++.+++++|++
T Consensus       122 l~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~-----~------~~~~v~l~~p~nptG~~~~~~~l~~l~~  190 (400)
T 3asa_A          122 AIQDPSYPAYLDIARLTGAKEIIALPCLQENAFFPEFPED-----T------HIDILCLCSPNNPTGTVLNKDQLRAIVH  190 (400)
T ss_dssp             EEEESCCHHHHHHHHHTTCSEEEEEECCGGGTTCCCCCTT-----C------CCSEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             EECCCCcHHHHHHHHHcCCcceEecccchhcCcccChhhc-----c------CccEEEEeCCCCCCCCcCCHHHHHHHHH
Confidence            99999999999999999998 9999987655555554321     2      6899999999999999999999999999


Q ss_pred             HHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHH-----
Q 009517          298 FCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEV-----  372 (533)
Q Consensus       298 l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~-----  372 (533)
                      +|+++|+++|+||+|.++.+++. ...++..+    .  ....++|++.||||++ |++|+|+||+++   ++++     
T Consensus       191 ~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~----~--~~~~~~i~~~s~sK~~-g~~GlriG~~~~---~~~~~~~~~  259 (400)
T 3asa_A          191 YAIEHEILILFDAAYSTFISDPS-LPKSIFEI----P--DARFCAIEINSFSKPL-GFAGIRLGWTVI---PQELTYADG  259 (400)
T ss_dssp             HHHHTTCEEEEECTTGGGCCCTT-SCSSGGGS----T--TGGGTEEEEEECCGGG-TTTTCCCEEEEC---CTTCBCTTS
T ss_pred             HHHHcCCEEEEEchhhhhhcCCC-CCCchhhC----C--CCCCceEEEecchhhc-CCcchheeEEee---Chhhccchh
Confidence            99999999999999999877553 12233222    0  0122578999999999 889999999987   7776     


Q ss_pred             --HHHHHHh-hh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCcee
Q 009517          373 --REQIYKV-AS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAM  448 (533)
Q Consensus       373 --~~~l~~~-~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~  448 (533)
                        +..+... .. ...++++++|.++..+|++.            ++++++++++++++++.+.|+++ |+.+..+.+++
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~------------~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~  326 (400)
T 3asa_A          260 HFVIQDWERFLSTTFNGASIPAQEAGVAGLSIL------------PQLEAIHYYRENSDLLRKALLAT-GFEVFGGEHAP  326 (400)
T ss_dssp             CBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHT------------TTCHHHHHHHHHHHHHHHHHHHT-TCEEEECSSSS
T ss_pred             hhHHHHHHHHhccCccCCChHHHHHHHHHhCcH------------HHHHHHHHHHHHHHHHHHHHHHC-CCeeeCCCCce
Confidence              5555432 22 23468999999988887421            34567788899999999999998 89988888899


Q ss_pred             EEecc-cCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHHHH
Q 009517          449 YLFPR-IQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       449 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~  527 (533)
                      |+|++ ++  .+         . +...++..+++++||.+.||..|+ ..+.++|||++..++++|++++++|+++++++
T Consensus       327 ~~~~~~~~--~~---------~-~~~~~~~~l~~~~gv~v~~g~~f~-~~~~~~iRis~~~~~e~i~~~l~~l~~~~~~~  393 (400)
T 3asa_A          327 YLWVKPTQ--AN---------I-SDRDLFDFFLREYHIAITPGIGFG-RSGSGFVRFSSLGKREDILAACERLQMAPALQ  393 (400)
T ss_dssp             EEEEECCC--TT---------C-CTTTHHHHHHHHHSEECEEGGGGC-GGGTTCEEEECCSCHHHHHHHHHHHHC-----
T ss_pred             EEEEeccC--CC---------C-CHHHHHHHHHHhCCEEEeChhHhC-CCCCCEEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence            99976 43  11         1 122345567777899999999997 33455899997788999999999999999988


Q ss_pred             HHHh
Q 009517          528 MDKF  531 (533)
Q Consensus       528 ~~~~  531 (533)
                      ..++
T Consensus       394 ~~~~  397 (400)
T 3asa_A          394 SHHH  397 (400)
T ss_dssp             ----
T ss_pred             hhcc
Confidence            7654

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=100.00  E-value=3.2e-43  Score=365.48  Aligned_cols=362  Identities=15%  Similarity=0.207  Sum_probs=282.1

Q ss_pred             eeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHH--HHHhcCCCCCcccc-CCCcccHHHHHH
Q 009517           99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAW--QILDQIPGRATGAY-SHSQGIKGLRDT  175 (533)
Q Consensus        99 ~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~--~~~~~~~~~~~~~Y-~~~~G~~~lr~a  175 (533)
                      +|||+.|.|+.                   ..++.       |+.+.+++.  +.+..  ......| ++..|..+||++
T Consensus        27 ~i~l~~g~p~~-------------------~~~~~-------~~~v~~a~~~~~~~~~--~~~~~~Yp~~~~g~~~lr~~   78 (423)
T 3ez1_A           27 NLNMQRGQPAD-------------------ADFDL-------SNGLLTVLGAEDVRMD--GLDLRNYPGGVAGLPSARAL   78 (423)
T ss_dssp             CEESCCCCCCH-------------------HHHHT-------TGGGGGSCCGGGCEET--TEETTSSCSCTTCCHHHHHH
T ss_pred             eEecCCCCCCh-------------------HhCCC-------cHHHHHHHhhhHHhhc--chhhhCCCCCCCChHHHHHH
Confidence            79999999982                   00022       456666664  33331  1124789 889999999999


Q ss_pred             HHHHHHhhcCCCCCCCCEEEcCChHHHHH--HHHHHhccC--C---------CCeEEEcCCcCcchHHHHHHhCCeEEEE
Q 009517          176 IAAGIEARDGFPADPNDIFLTDGASPAVH--MMMQLLIRS--E---------NDGILCPIPQYPLYSASIALHGGTLVPY  242 (533)
Q Consensus       176 ia~~~~~~~g~~~~~~~i~~t~G~~~al~--~~~~~l~~~--~---------gd~Vlv~~p~~~~~~~~~~~~g~~~~~v  242 (533)
                      +|++++      +++++|++|+|+++++.  .+++.++ .  +         ||+|+++.|+|.++...++..|++++.+
T Consensus        79 ia~~~~------~~~~~i~~t~G~~~al~~~~~~~~l~-~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v  151 (423)
T 3ez1_A           79 FAGYLD------VKAENVLVWNNSSLELQGLVLTFALL-HGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFELLTV  151 (423)
T ss_dssp             HHHHTT------SCGGGEEECSSCHHHHHHHHHHHHHH-TCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEEEEE
T ss_pred             HHHHhC------CChhhEEEeCCcHHHHHHHHHHHHHh-ccCCCccccccCCCCEEEEcCCCcHHHHHHHHHcCCEEEec
Confidence            999984      67889999999999998  8888887 6  7         5999999999999999999999999999


Q ss_pred             ecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEe-CCCCCCccCCCHHHHHHHHHHH-HHcCCEEEEccccccccccC-
Q 009517          243 YLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLAEENQRAIVDFC-KKEGLVLLADEVYQENVYVP-  319 (533)
Q Consensus       243 ~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~-~p~NPtG~~~s~~~l~~i~~l~-~~~~~~lI~De~y~~~~~~~-  319 (533)
                      +++.+   ++|+++|+++++.    .+++++|+++ +||||||.+++.+++++|+++| ++||++||+||+|..+.|.+ 
T Consensus       152 ~~~~~---g~d~~~l~~~l~~----~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~  224 (423)
T 3ez1_A          152 DMQSD---GPDVDAVERLAGT----DPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEE  224 (423)
T ss_dssp             EEETT---EECHHHHHHHHHS----CTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSS
T ss_pred             cCCCC---CCCHHHHHHHHhh----CCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCC
Confidence            99864   6999999999962    1279999766 8999999999999999999999 99999999999999766654 


Q ss_pred             C-CCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHH
Q 009517          320 E-KKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLV  397 (533)
Q Consensus       320 ~-~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~  397 (533)
                      + .+..++..+....   +...++|++.||||++  ++|+|+||+++   ++++++.+..... .+++++++.|.++..+
T Consensus       225 ~~~~~~~~~~~~~~~---~~~~~~i~~~S~sK~~--~~G~r~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  296 (423)
T 3ez1_A          225 DRAEPVNFVVLARDA---GYPDRAFVFASTSKIT--FAGAGLGFVAS---SEDNIRWLSKYLGAQSIGPNKVEQARHVKF  296 (423)
T ss_dssp             SCCCCCCHHHHHHHH---TCTTSEEEEEESTTTS--CSSSSCEEEEE---CHHHHHHHHHHHHHSCSCCCHHHHHHHHHH
T ss_pred             CCCCCcchhhhhhcc---CCCCeEEEEeCchhhc--cCCcceEEEEe---CHHHHHHHHHHHhhhccCCCHHHHHHHHHH
Confidence            2 2344555543322   1233689999999974  48999999998   9999999988775 6788999999999988


Q ss_pred             cCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CC-CceEecCCceeEEecccCCCHHHHHHHHhcCCCCh
Q 009517          398 MSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNS----LE-GITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPD  472 (533)
Q Consensus       398 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~-g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~  472 (533)
                      |++.      ...+.++++++++.++++++.+.+.|.+    ++ ++.+..|++|+|+|++++..             +.
T Consensus       297 l~~~------~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~-------------~~  357 (423)
T 3ez1_A          297 LTEY------PGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLDTAEP-------------VA  357 (423)
T ss_dssp             HHHS------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSBSSCEEEEESSS-------------CH
T ss_pred             HHhc------cchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCccEEEEEECCCC-------------cH
Confidence            8630      0123455666777777777776666644    53 37888899999999776521             12


Q ss_pred             HHHHHHHHHccceEEEc-CCCCCC--CCCCceEEEEec-CCcCcHHHHHHHHHHHHHHHHHH
Q 009517          473 AFYCRRLLNATGIVLVP-GSGFGQ--VPGTWHFRCTIL-PQEDKIPAIVTRLTDFHKNFMDK  530 (533)
Q Consensus       473 ~~~~~~ll~~~gV~v~p-g~~f~~--~~g~~~iRis~~-~~~e~i~~~~~~l~~~l~~~~~~  530 (533)
                      . .+.++|.++||.+.| |..|+.  ..+.++|||+++ .++++|++++++|++++++...+
T Consensus       358 ~-~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~~~~  418 (423)
T 3ez1_A          358 D-RVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRPPVEEVRTAMQVVAACIRLATEE  418 (423)
T ss_dssp             H-HHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEECCSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHCCcEEecCcccccCCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            2 344667889999999 777753  234569999998 58999999999999999987654

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=100.00  E-value=4.5e-43  Score=363.49  Aligned_cols=325  Identities=20%  Similarity=0.273  Sum_probs=252.6

Q ss_pred             cccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCC-----eEEEc-CCcCcchHHHHHH
Q 009517          161 GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND-----GILCP-IPQYPLYSASIAL  234 (533)
Q Consensus       161 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd-----~Vlv~-~p~~~~~~~~~~~  234 (533)
                      ..|++..|..+||+++|+++.+.+|+.+++++|++|+|+++|+.++++.++ ++||     +|+++ +|+|++|...+..
T Consensus        69 ~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~-~~gd~~~~~~vi~~~~p~~~~~~~~~~~  147 (417)
T 3g7q_A           69 CNYDGPQGKTALLNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFA-GRRADGSTKKVLFPLAPEYIGYADSGLE  147 (417)
T ss_dssp             HSTTCTTSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS-BC----CCBEEEESSCCCHHHHHC----
T ss_pred             eccCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHHHHHHHHHHHc-CCCccCCcceEEEeCCCccccchhhccc
Confidence            479999999999999999999999999999999999999999999999998 7887     89997 9999999876543


Q ss_pred             h------CCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEE
Q 009517          235 H------GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLA  308 (533)
Q Consensus       235 ~------g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~  308 (533)
                      .      +..+..++.+. .+|.+|+++|+  +++      ++++|++++||||||.+++.+++++|+++|++||+++|+
T Consensus       148 ~~~~~~~~~~~~~~~~~~-~~~~~d~~~l~--~~~------~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~  218 (417)
T 3g7q_A          148 DDLFVSARPNIELLPEGQ-FKYHVDFEHLH--IGE------ETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVI  218 (417)
T ss_dssp             -CCEEECCCEEEEEGGGE-EEEECCGGGCC--CCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred             hhhhccccCcccccCCcc-cccccCHHHhc--ccc------CceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEE
Confidence            2      23344444321 14678999888  443      799999999999999999999999999999999999999


Q ss_pred             ccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCC
Q 009517          309 DEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSN  387 (533)
Q Consensus       309 De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~  387 (533)
                      ||+|..+.. + ..+..   ...     +...++|++.|||| + +++|+|+||+++   ++++++.+..... .+++++
T Consensus       219 De~~~~~~~-~-~~~~~---~~~-----~~~~~~i~~~s~sK-~-~~~G~r~G~~~~---~~~~~~~~~~~~~~~~~~~~  283 (417)
T 3g7q_A          219 DNAYGVPFP-G-IIFSE---ARP-----LWNPNIILCMSLSK-L-GLPGSRCGIIIA---NDKTITAIANMNGIISLAPG  283 (417)
T ss_dssp             ECTTCTTTT-C-CBCSC---CCC-----CCCTTEEEEEESGG-G-TCTTSCCEEEEC---CHHHHHHHHHHHHHHCCCCC
T ss_pred             eCCCccccc-c-ccccc---ccc-----CCCCCEEEEEechh-c-cCCCcceEEEEe---CHHHHHHHHHhhcceeeCCC
Confidence            999986321 1 01111   001     11235799999999 6 679999999998   9999999988765 667889


Q ss_pred             hHHHHHHHHHcCCCCCCChhHHHHHHHHHH-HHHHHHHHHHHHHHHHhc-CC--CceEecCCceeEEecccCCCHHHHHH
Q 009517          388 ISGQILASLVMSPPKVGDESYESYCAERDG-ILSSLARRAKTLEDAFNS-LE--GITCNKAEGAMYLFPRIQLPEKAIKA  463 (533)
Q Consensus       388 ~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~-~~--g~~~~~~~gg~~~~~~~~~~~~~~~~  463 (533)
                      +++|.++..++++..        +.++..+ +++.++++++.+.+.|.+ ++  ++.+..|++|+|+|++++..      
T Consensus       284 ~~~~~~~~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~------  349 (417)
T 3g7q_A          284 GMGPAMMCEMIKRND--------LLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHKPEGAIFLWLWFKDL------  349 (417)
T ss_dssp             SHHHHHHHHHHHTTC--------HHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTCEEECCCBSSEEEEECTTC------
T ss_pred             cHHHHHHHHHHcCcc--------hHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeeCCCcceEEEEEcCCC------
Confidence            999999999987543        3344444 777888899888888876 45  57888899999999766521      


Q ss_pred             HHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCC------CceEEEEecCCcCcHHHHHHHHHHHHHHHHHH
Q 009517          464 AEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPG------TWHFRCTILPQEDKIPAIVTRLTDFHKNFMDK  530 (533)
Q Consensus       464 ~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g------~~~iRis~~~~~e~i~~~~~~l~~~l~~~~~~  530 (533)
                          +. +...++. .|.++||.+.||..|+....      .++||||++.++++|++++++|+++++++.++
T Consensus       350 ----~~-~~~~l~~-~l~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~~~~~i~~~~~~l~~~l~~~~~~  416 (417)
T 3g7q_A          350 ----PI-TTELLYQ-RLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVPEPDKIEAGVKILAEEIERAWRE  416 (417)
T ss_dssp             ----SS-CHHHHHH-HHHHTTEECEEGGGGCTTBSSCCGGGGGEEEEESCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----CC-CHHHHHH-HHHHCCEEEECchhhCCCCccccccCCCeEEEEecCCHHHHHHHHHHHHHHHHHHHhc
Confidence                01 2344444 45778999999999864221      46999999888899999999999999988654

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=100.00  E-value=2e-43  Score=376.82  Aligned_cols=347  Identities=18%  Similarity=0.255  Sum_probs=265.9

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHH-HhhcCCCC---CCCCEEEcCChHHHHHHHHHHh-----c
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGI-EARDGFPA---DPNDIFLTDGASPAVHMMMQLL-----I  211 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~-~~~~g~~~---~~~~i~~t~G~~~al~~~~~~l-----~  211 (533)
                      ++.+++++.+.+.      ...|++..|..+||+++++++ .++++...   ++++|++|+|+++++..+++++     +
T Consensus       118 ~~~~~~al~~~~~------~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~~~~~~l~~~~l~  191 (546)
T 2zy4_A          118 PAAFLHEMVDGIL------GCNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYIFESLKLNGLL  191 (546)
T ss_dssp             HHHHHHHHHHHHH------TCSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHHHHHHHHHHTTSS
T ss_pred             ChHHHHHHHHhhh------cCCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhcC
Confidence            4566777666653      247999999999999988766 44444322   4689999999999999999883     5


Q ss_pred             cCCCCeEEEcCCcCcchHHHHHHh--CCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCH
Q 009517          212 RSENDGILCPIPQYPLYSASIALH--GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAE  289 (533)
Q Consensus       212 ~~~gd~Vlv~~p~~~~~~~~~~~~--g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~  289 (533)
                       ++||+|++++|+|+.|...+...  |++++.++++++++|.+|++.|+++++.      ++++|++++||||||.+++.
T Consensus       192 -~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~k~v~l~~p~NPtG~~~~~  264 (546)
T 2zy4_A          192 -KAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKDP------AIKIFFCVNPSNPPSVKMDQ  264 (546)
T ss_dssp             -CTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGST------TEEEEEEESSCSSSCBCCCH
T ss_pred             -CCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhCC------CCeEEEEECCCCCCCccCCH
Confidence             79999999999999999886654  6899999998877899999999887754      79999999999999999999


Q ss_pred             HHHHHHHHHH--HHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEec
Q 009517          290 ENQRAIVDFC--KKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTG  367 (533)
Q Consensus       290 ~~l~~i~~l~--~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~  367 (533)
                      +++++|+++|  +++|++||+||+|.+|.++    ..++...       .+ .++|++.||||++ |++|+|+||+++  
T Consensus       265 ~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~----~~s~~~~-------~~-~~~i~~~S~SK~~-g~~GlRiG~~~~--  329 (546)
T 2zy4_A          265 RSLERVRNIVAEHRPDLMILTDDVYGTFADD----FQSLFAI-------CP-ENTLLVYSFSKYF-GATGWRLGVVAA--  329 (546)
T ss_dssp             HHHHHHHHHHHHTCTTCEEEEECTTGGGSTT----CCCHHHH-------CG-GGEEEEEESTTTT-TCGGGCEEEEEE--
T ss_pred             HHHHHHHHHHHhccCCcEEEEeCcchhhccc----CcCHHHh-------CC-CCEEEEEeCcccc-CCCCcceEEEEE--
Confidence            9999999999  7889999999999998752    2344332       22 3589999999998 899999999998  


Q ss_pred             CCHH-HHHHHHHh-------------h------------------------hccccCChHHHHHH-----HHHcCCCCCC
Q 009517          368 FSAE-VREQIYKV-------------A------------------------SVNLCSNISGQILA-----SLVMSPPKVG  404 (533)
Q Consensus       368 ~~~~-~~~~l~~~-------------~------------------------~~~~~~~~~~q~a~-----~~~L~~~~~~  404 (533)
                       +++ +++.+...             .                        ..+.+.+.+.|.++     .+++++.+  
T Consensus       330 -~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~~~~--  406 (546)
T 2zy4_A          330 -HQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDEAD--  406 (546)
T ss_dssp             -ESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHCTTC--
T ss_pred             -CCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHhccH--
Confidence             554 76665311             0                        12245677777764     34454322  


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCC------CHHHHHHHHhcCCCChHHHHHH
Q 009517          405 DESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQL------PEKAIKAAEAEKTVPDAFYCRR  478 (533)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~  478 (533)
                              .+.+.+++.|+++++.+.+.|. + ++.+.+++++||+|++++.      ..+...-.. .+. ++..++.+
T Consensus       407 --------~~~~~~r~~~~~r~~~l~~~L~-~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~-~~~-~~~~~l~~  474 (546)
T 2zy4_A          407 --------EYKHTLKQLIRRRETTLYRELG-M-PPLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAV-KQS-STGDMLFR  474 (546)
T ss_dssp             --------HHHHHHHHHHHHHHHHHHGGGT-S-SCCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHH-HHC-CHHHHHHH
T ss_pred             --------HHHHHHHHHHHHHHHHHHHhcC-C-CcccCCCCeeEEEEEEHHHhhcccccHHHHHHhh-ccC-CHHHHHHH
Confidence                    3456778889999999999986 5 5666788999999977641      000000000 011 23445667


Q ss_pred             HHHccceEEEcCCCCCCCCCCceEEEEec-CCcCcHHHHHHHHHHHHHHHHHHhc
Q 009517          479 LLNATGIVLVPGSGFGQVPGTWHFRCTIL-PQEDKIPAIVTRLTDFHKNFMDKFR  532 (533)
Q Consensus       479 ll~~~gV~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~~~~l~~~l~~~~~~~~  532 (533)
                      +++++||.+.||..|+.  +.++|||+++ .+++++++++++|+++++++.++|+
T Consensus       475 ll~~~gV~v~pG~~F~~--~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~~~~~~  527 (546)
T 2zy4_A          475 IADETGIVLLPGRGFGS--NRPSGRASLANLNEYEYAAIGRALRKMADELYAEYS  527 (546)
T ss_dssp             HHHHHSCCCEESSCTTC--SSCEEEEESSSSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHCCEEEeCccccCC--CCCeEEEEeccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88899999999999984  3459999998 5888999999999999999988876

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=100.00  E-value=9.3e-44  Score=379.24  Aligned_cols=355  Identities=19%  Similarity=0.225  Sum_probs=274.9

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhh-cC-CCCC-CCCEEEcCChHHHHHHHHHH-----hcc
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEAR-DG-FPAD-PNDIFLTDGASPAVHMMMQL-----LIR  212 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~-~g-~~~~-~~~i~~t~G~~~al~~~~~~-----l~~  212 (533)
                      |+++++++.+.+..     ...|.+..|..++|+++++++... ++ ..+. +++|++|+|+++++..+++.     ++ 
T Consensus       117 ~~~~v~a~~~~~~~-----~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~~~l~-  190 (533)
T 3f6t_A          117 RDKVVAEWVNGAVA-----NNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLL-  190 (533)
T ss_dssp             HHHHHHHHHHHHHT-----CSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHHTTSS-
T ss_pred             CcHHHHHHHHHHHh-----CCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhcc-
Confidence            57788888777764     223448889999999999999766 34 4555 47999999999999999998     56 


Q ss_pred             CCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCC--CCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHH
Q 009517          213 SENDGILCPIPQYPLYSASIALHGGTLVPYYLDE--ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE  290 (533)
Q Consensus       213 ~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~--~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~  290 (533)
                      ++||+|+++.|+|.+|...+...|.+++.++++.  +.+|++|+++|++++++      ++++|++++||||||.+++.+
T Consensus       191 ~~gd~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~------~~k~v~l~~p~NPtG~~~~~~  264 (533)
T 3f6t_A          191 KKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDP------SIKALIVVNPTNPTSKEFDTN  264 (533)
T ss_dssp             CTTCEEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSCT------TEEEEEEESSCTTTCBCCCHH
T ss_pred             CCcCEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhCC------CCeEEEEeCCCCCCccccCHH
Confidence            7999999999999999999999999999999875  56789999999999865      799999999999999999999


Q ss_pred             HHHHHHHHHH-HcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCC
Q 009517          291 NQRAIVDFCK-KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFS  369 (533)
Q Consensus       291 ~l~~i~~l~~-~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~  369 (533)
                      ++++|+++|+ +||++||+||+|.++.++.    .++...       .+ .++|++.||||.+ |++|+|+||+++   +
T Consensus       265 ~l~~l~~la~~~~~~~li~De~y~~~~~~~----~~~~~~-------~~-~~~i~~~S~SK~~-g~~G~RiG~l~~---~  328 (533)
T 3f6t_A          265 ALNAIKQAVEKNPKLMIISDEVYGAFVPNF----KSIYSV-------VP-YNTMLVYSYSKLF-GCTGWRLGVIAL---N  328 (533)
T ss_dssp             HHHHHHHHHHHCTTCEEEEECTTGGGSTTC----CCHHHH-------SG-GGEEEEEESHHHH-TCGGGCEEEEEE---E
T ss_pred             HHHHHHHHHHhCCCCEEEEcCCccccccCc----cCHhhc-------CC-CCEEEEecCcccC-CCcccceEEEEE---C
Confidence            9999999999 5899999999999987642    233332       12 3689999999999 899999999998   4


Q ss_pred             HH-----HHHHH--------------------------------HHhhh-ccccCChHHHHH----HHHHcCCCCCCChh
Q 009517          370 AE-----VREQI--------------------------------YKVAS-VNLCSNISGQIL----ASLVMSPPKVGDES  407 (533)
Q Consensus       370 ~~-----~~~~l--------------------------------~~~~~-~~~~~~~~~q~a----~~~~L~~~~~~~~~  407 (533)
                      ++     +++.+                                ..... .+++++.+.|.+    +..+|... .++. 
T Consensus       329 ~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~~-~g~~-  406 (533)
T 3f6t_A          329 EKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTS-TNGG-  406 (533)
T ss_dssp             SSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTTC-BGGG-
T ss_pred             cHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhhh-cccc-
Confidence            44     33221                                22222 456778888887    34445310 0000 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHH-----HHHhcCCCChHHHHHHHHHc
Q 009517          408 YESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIK-----AAEAEKTVPDAFYCRRLLNA  482 (533)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ll~~  482 (533)
                        .+.++++++++.|+++++.+.+.|. + ++.+..++++||+|+++..-.....     ..-..+ .++..++.+++++
T Consensus       407 --~~~~~~~~~~~~~~~r~~~l~~~L~-~-~~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~-~~~~~~~~~ll~~  481 (533)
T 3f6t_A          407 --SDDPYIDIARKLVSERYDQLHDAMQ-A-PKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNN-FEQVDFLLKLAEK  481 (533)
T ss_dssp             --TBCHHHHHHHHHHHHHHHHHHHHHT-C-CCCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHH-CCHHHHHHHHHHH
T ss_pred             --chHHHHHHHHHHHHHHHHHHHHhcC-C-CccccCCCceEEEEEehHhhhhhccchHHHHHhhcc-CCHHHHHHHHHHh
Confidence              1235567888999999999999998 6 7888899999999977641000000     000000 1345566788888


Q ss_pred             cceEEEcCCCCCCCCCCceEEEEec-CCcCcHHHHHHHHHHHHHHHHHHhc
Q 009517          483 TGIVLVPGSGFGQVPGTWHFRCTIL-PQEDKIPAIVTRLTDFHKNFMDKFR  532 (533)
Q Consensus       483 ~gV~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~~~~l~~~l~~~~~~~~  532 (533)
                      +||++.||+.|+..  .++||||++ .++++|++++++|+++++++.++|+
T Consensus       482 ~GV~v~pg~~f~~~--~~~iRls~a~~~~e~i~~~i~~L~~~l~~~~~~~~  530 (533)
T 3f6t_A          482 NGVVLVDGVGFGAK--PGELRVSQANLPTEDYALIGKQVLELLKEYYEEFK  530 (533)
T ss_dssp             TTSSSCTTEEECSS--TTEEEEESSSSCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCEEEeCCcccCCC--CCEEEEEEeeCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999853  349999998 7999999999999999999998875

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=100.00  E-value=1.3e-42  Score=359.76  Aligned_cols=342  Identities=15%  Similarity=0.122  Sum_probs=266.0

Q ss_pred             CHHHHHHHHH-HHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEE--cCChHHHHHHHH--HHhccCCC
Q 009517          141 SADSIERAWQ-ILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFL--TDGASPAVHMMM--QLLIRSEN  215 (533)
Q Consensus       141 p~~v~~~~~~-~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~--t~G~~~al~~~~--~~l~~~~g  215 (533)
                      ++.+.+++.+ .+..  . ....|.+..|..+||+++++++.+.+|.++++++|++  |+|+++++..++  ..++ .+|
T Consensus        49 ~~~v~~a~~~~~~~~--~-~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g~~~a~~~~~~~~~~~-~~g  124 (412)
T 1yaa_A           49 LPSVKAAEKLIHNDS--S-YNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKF-FPD  124 (412)
T ss_dssp             CHHHHHHHHHHHTCT--T-CCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHH-CTT
T ss_pred             cHHHHHHHHhhhcCc--c-cccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccchHhHHHHHHHHHHHh-CCC
Confidence            6788888887 7653  1 2567999999999999999999876676667899999  999999999984  3334 589


Q ss_pred             CeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHH
Q 009517          216 DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAI  295 (533)
Q Consensus       216 d~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i  295 (533)
                      |+|+++.|+|++|...++..|++++.+++.+++++++|+++|++++++.   .+.+.++++++||||||.+++.+++++|
T Consensus       125 d~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~~~~~~~p~nPtG~~~~~~~l~~l  201 (412)
T 1yaa_A          125 KLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKA---PEGSIFVLHSCAHNPTGLDPTSEQWVQI  201 (412)
T ss_dssp             CCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHS---CTTCEEEEECSSCTTTCCCCCHHHHHHH
T ss_pred             CEEEEeCCCCccHHHHHHHcCceEEEEeeecCCCCccCHHHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHH
Confidence            9999999999999999999999999999832336789999999999762   1124455558999999999999999999


Q ss_pred             HHHHHHcCCEEEEccccccccccCC-CCcccHHHHHhhcCCCCCC-ceEEEEecCCccCCCCCCCeeEEEEEec----CC
Q 009517          296 VDFCKKEGLVLLADEVYQENVYVPE-KKFHSFKKVSRSMGYGEKD-ISLVSFQSVSKGYYGECGKRGGYMEVTG----FS  369 (533)
Q Consensus       296 ~~l~~~~~~~lI~De~y~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~vi~i~S~SK~~~gl~G~riG~v~~~~----~~  369 (533)
                      +++|++||+++|+||+|.++.+++. ....++..+.. .   .++ .++|++.||||.+ |++|+|+||+++..    .+
T Consensus       202 ~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~i~~~s~sK~~-~~~GlriG~~~~~~~~~~~~  276 (412)
T 1yaa_A          202 VDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVE-K---LSTVSPVFVCQSFAKNA-GMYGERVGCFHLALTKQAQN  276 (412)
T ss_dssp             HHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHH-H---TTTTCCEEEEEECTTTS-CCGGGCEEEEEEECCSCTTH
T ss_pred             HHHHHHCCCEEEEecccccccCCcccchhHHHHHHHh-c---CCCCcceEEEeccCCCC-CCcCCcceEEEEEecCCCCC
Confidence            9999999999999999999887541 01223323221 1   120 0479999999999 78899999997211    14


Q ss_pred             HH----HHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CceE
Q 009517          370 AE----VREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLE---GITC  441 (533)
Q Consensus       370 ~~----~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---g~~~  441 (533)
                      ++    +++.+..... .+.+++.++|.++..+|++.    ...+.|.+++++++++++++++++.+.|++++   ++.+
T Consensus       277 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~  352 (412)
T 1yaa_A          277 KTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETP----ELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDH  352 (412)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTH
T ss_pred             HHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeee
Confidence            55    7777776444 45566899999999888632    12223456778899999999999999999873   3888


Q ss_pred             ecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec-CCcCcHHHHHHHH
Q 009517          442 NKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-PQEDKIPAIVTRL  520 (533)
Q Consensus       442 ~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~~~~l  520 (533)
                      ..+++|+|+|++++                ... +..+++++||.+.|           ++||+++ .+++++++++++|
T Consensus       353 ~~~~~~~~~~~~~~----------------~~~-~~~~l~~~gi~v~~-----------~~Ris~~~~~~~~i~~~~~~l  404 (412)
T 1yaa_A          353 IVNQCGMFSFTGLT----------------PQM-VKRLEETHAVYLVA-----------SGRASIAGLNQGNVEYVAKAI  404 (412)
T ss_dssp             HHHCCSSEEECCCC----------------HHH-HHHHHHHHCEECCT-----------TSEEEGGGCCTTTHHHHHHHH
T ss_pred             eccCceEEEeeCCC----------------HHH-HHHHHHhCCEEecc-----------CcEEEEccCCHhHHHHHHHHH
Confidence            88999999996543                122 45777789999986           4699998 6899999999999


Q ss_pred             HHHHHH
Q 009517          521 TDFHKN  526 (533)
Q Consensus       521 ~~~l~~  526 (533)
                      +++++.
T Consensus       405 ~~~~~~  410 (412)
T 1yaa_A          405 DEVVRF  410 (412)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998764

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=100.00  E-value=4e-42  Score=350.00  Aligned_cols=331  Identities=14%  Similarity=0.145  Sum_probs=274.5

Q ss_pred             eeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHH
Q 009517           99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA  178 (533)
Q Consensus        99 ~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~  178 (533)
                      +|+|+.|.+.+                      +.       |+.+++++.+.+..     ...|++..+ .+||+++|+
T Consensus        32 ~i~l~~~~~~~----------------------~~-------~~~v~~a~~~~~~~-----~~~y~~~~~-~~lr~~la~   76 (365)
T 3get_A           32 VIKLASNENPF----------------------GT-------PPKAIECLRQNANK-----AHLYPDDSM-IELKSTLAQ   76 (365)
T ss_dssp             CEECSSCCCTT----------------------CS-------CHHHHHHHHHHGGG-----TTSCCCTTC-HHHHHHHHH
T ss_pred             eEEecCCCCCC----------------------CC-------CHHHHHHHHHHHHh-----hccCCCCCh-HHHHHHHHH
Confidence            99999998764                      22       78999999888874     567888776 899999999


Q ss_pred             HHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHH
Q 009517          179 GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVK  258 (533)
Q Consensus       179 ~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~  258 (533)
                      +++      +++++|++|+|+++++..+++.++ ++||+|+++.|+|..+...++..|++++.+++ .+.++ +|+++++
T Consensus        77 ~~~------~~~~~v~~~~g~~~a~~~~~~~l~-~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~-~d~~~l~  147 (365)
T 3get_A           77 KYK------VQNENIIIGAGSDQVIEFAIHSKL-NSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQS-ITHNL-DEFKKLY  147 (365)
T ss_dssp             HHT------CCGGGEEEESSHHHHHHHHHHHHC-CTTCEEEECSSCCTHHHHHHHHHTCEEEECSS-SSCCH-HHHHHHH
T ss_pred             HhC------CCcceEEECCCHHHHHHHHHHHHh-CCCCEEEEeCCChHHHHHHHHHcCCEEEEEec-CCCCC-CCHHHHH
Confidence            984      678899999999999999999998 89999999999999999999999999999998 33467 9999999


Q ss_pred             HHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccc--cCCCCcccHHHHHhhcCCC
Q 009517          259 KQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY--VPEKKFHSFKKVSRSMGYG  336 (533)
Q Consensus       259 ~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~--~~~~~~~~~~~~~~~~~~~  336 (533)
                      +++++      ++++|++++||||||.+++.+++++|+++| ++|+++|+||+|.++.|  .+. ...+.......    
T Consensus       148 ~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~-~~~~~~~~~~~----  215 (365)
T 3get_A          148 ETHKD------EIKLIFLCLPNNPLGECLDASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSK-KHLEPCELIKE----  215 (365)
T ss_dssp             HHTTT------TEEEEEEESSCTTTCCCCCHHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGG-GCCCHHHHHHH----
T ss_pred             HHhCC------CCCEEEEcCCCCCCCCCcCHHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCc-ccccHhHHhcc----
Confidence            99975      899999999999999999999999999998 57999999999999875  432 22333333222    


Q ss_pred             CCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHH
Q 009517          337 EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERD  416 (533)
Q Consensus       337 ~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~  416 (533)
                        ..+++++.||||.+ |++|+|+||+++   ++++++.+..... .+++++++|.++..+|+.           .++++
T Consensus       216 --~~~~i~~~s~sK~~-~~~G~r~G~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~-----------~~~~~  277 (365)
T 3get_A          216 --FDNVLYLGTFSKLY-GLGGLRIGYGIA---NANIISAFYKLRA-PFNVSNLALKAAVAAMDD-----------DEFTE  277 (365)
T ss_dssp             --CTTEEEEEESSSTT-SCTTTCCEEEEE---CHHHHHHHHHHSC-TTCSCHHHHHHHHHHHTC-----------HHHHH
T ss_pred             --CCCEEEEeecchHh-cCcchheEEEEc---CHHHHHHHHHhcC-CCCcCHHHHHHHHHHhCC-----------HHHHH
Confidence              22478999999999 889999999998   9999999887654 367899999999999863           14567


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCC
Q 009517          417 GILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQV  496 (533)
Q Consensus       417 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~  496 (533)
                      +++++++++++.+.+.|+++ |+.+.++.|+ |+|++++.            . +...+. +.|.++||.+.||..|+  
T Consensus       278 ~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~-~~~~~~~~------------~-~~~~~~-~~l~~~gi~v~~g~~~~--  339 (365)
T 3get_A          278 KTLENNFSQMELYKEFAKKH-NIKIIDSYTN-FITYFFDE------------K-NSTDLS-EKLLKKGIIIRNLKSYG--  339 (365)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT-TCEECCCSSS-EEEEECSS------------S-CHHHHH-HHHHTTTEECEECGGGT--
T ss_pred             HHHHHHHHHHHHHHHHHHhC-CCEECCCCCe-EEEEECCC------------C-CHHHHH-HHHHHCCEEEEECccCC--
Confidence            78889999999999999998 9988777665 57866541            1 234444 44556899999999987  


Q ss_pred             CCCceEEEEecCCcCcHHHHHHHHHHHH
Q 009517          497 PGTWHFRCTILPQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       497 ~g~~~iRis~~~~~e~i~~~~~~l~~~l  524 (533)
                        .++|||+++ +++++++++++|++++
T Consensus       340 --~~~iRis~~-~~~~i~~l~~~l~~~l  364 (365)
T 3get_A          340 --LNAIRITIG-TSYENEKFFTEFDKIL  364 (365)
T ss_dssp             --CSEEEEECC-CHHHHHHHHHHHHHHH
T ss_pred             --CCEEEEEcC-CHHHHHHHHHHHHHHh
Confidence              339999998 6788999999998875

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=100.00  E-value=9.8e-43  Score=355.87  Aligned_cols=327  Identities=20%  Similarity=0.341  Sum_probs=275.8

Q ss_pred             HHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcC
Q 009517          146 ERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQY  225 (533)
Q Consensus       146 ~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~  225 (533)
                      +++.+.+..    ....|.+..|..+||+++++++.     .+++++|++|+|+++|+..++++++ ++||+|+++.|+|
T Consensus        46 ~~~~~~~~~----~~~~y~~~~g~~~l~~~la~~~~-----~~~~~~v~~~~g~~~a~~~~~~~l~-~~gd~Vl~~~~~~  115 (375)
T 3op7_A           46 EDFYKKLQG----TKLNYGWIEGSPAFKKSVSQLYT-----GVKPEQILQTNGATGANLLVLYSLI-EPGDHVISLYPTY  115 (375)
T ss_dssp             HHHHHHHHT----SCCSSCCTTCCHHHHHHHHTTSS-----SCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEEESSC
T ss_pred             HHHHHHHhc----CCcCCCCCCChHHHHHHHHHHhc-----cCChhhEEEcCChHHHHHHHHHHhc-CCCCEEEEeCCCc
Confidence            455555555    36789999999999999999874     2668899999999999999999998 8999999999999


Q ss_pred             cchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCE
Q 009517          226 PLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLV  305 (533)
Q Consensus       226 ~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~  305 (533)
                      +++...+...|++++.++++.+++|.+|++++++++++      ++++|++++|+||||.+++.+++++|+++|++||++
T Consensus       116 ~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~  189 (375)
T 3op7_A          116 QQLYDIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRP------TTKMICINNANNPTGAVMDRTYLEELVEIASEVGAY  189 (375)
T ss_dssp             THHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCT------TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCE
T ss_pred             hhHHHHHHHcCCEEEEEeccccCCCCCCHHHHHHhhcc------CCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCE
Confidence            99999999999999999998767788999999999975      799999999999999999999999999999999999


Q ss_pred             EEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccc
Q 009517          306 LLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNL  384 (533)
Q Consensus       306 lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~  384 (533)
                      +|+||+|.++.+.   +..++...       .+  +++++.||||++ |++|+|+||+++   ++++++.+..... .++
T Consensus       190 li~De~~~~~~~~---~~~~~~~~-------~~--~~i~~~s~sK~~-~~~G~r~G~v~~---~~~l~~~~~~~~~~~~~  253 (375)
T 3op7_A          190 ILSDEVYRSFSEL---DVPSIIEV-------YD--KGIAVNSLSKTY-SLPGIRIGWVAA---NHQVTDILRDYRDYTMI  253 (375)
T ss_dssp             EEEECCSCCCSSS---CCCCHHHH-------CT--TEEEEEESSSSS-SCGGGCCEEEEC---CHHHHHHHTTTGGGTTS
T ss_pred             EEEEccccccccc---CCCchhhh-------cC--CEEEEeEChhhc-CCcccceEEEEe---CHHHHHHHHHHHhhhcc
Confidence            9999999998775   22333222       12  358899999999 789999999998   9999999987765 567


Q ss_pred             cCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHH
Q 009517          385 CSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAA  464 (533)
Q Consensus       385 ~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~  464 (533)
                      +++++.+.++..+|+.          ..++++++++.++++++.+.+.|++.+++.++.+.++++.|+.++.+.      
T Consensus       254 ~~~~~~~~~~~~~l~~----------~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------  317 (375)
T 3op7_A          254 CAGVFDDLVAQLALAH----------YQEILERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDM------  317 (375)
T ss_dssp             CCCHHHHHHHHHHHHT----------HHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECCSS------
T ss_pred             CCCcHHHHHHHHHHhc----------cHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCCCC------
Confidence            7889999888887742          334567778888999999999999988999999999998887765321      


Q ss_pred             HhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHHHHHH
Q 009517          465 EAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       465 ~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~~~  529 (533)
                            +...++..+++++||.+.||..|+. .  +++||+++.+.++|++++++|+++++++.+
T Consensus       318 ------~~~~~~~~ll~~~gi~v~~g~~~~~-~--~~iRi~~~~~~~~i~~~l~~l~~~l~~~~~  373 (375)
T 3op7_A          318 ------PMEDFCLQLLQEHGVLLVPGNRFER-D--GYVRLGFACEQETLIKGLEKLSQFLRRFDK  373 (375)
T ss_dssp             ------CHHHHHHHHHHHHCEECEEGGGGTC-T--TEEEECCCSCHHHHHHHHHHHHHHHGGGC-
T ss_pred             ------CHHHHHHHHHHhCCEEEeChhhhCC-C--CeEEEEecCCHHHHHHHHHHHHHHHHHHhh
Confidence                  2455667777889999999999974 3  399999987778999999999999876543

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=100.00  E-value=2.3e-46  Score=385.35  Aligned_cols=373  Identities=18%  Similarity=0.252  Sum_probs=297.3

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      +..++.....|+.+++    .+++|+|++|+|++                      +.       |+.+++++.+++.. 
T Consensus        14 ~~~~~~g~~~~d~~g~----~~~~i~l~~~~~~~----------------------~~-------~~~v~~a~~~~~~~-   59 (392)
T 3b1d_A           14 PNRLSHHTYKWKETET----DPQLLPAWIADMDF----------------------EV-------MPEVKQAIHDYAEQ-   59 (392)
Confidence            3444556666665544    12399999999864                      22       67788888887754 


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHh
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALH  235 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~  235 (533)
                         ....|++.  ..++|+++++++.+.+|.++++++|++|+|+++++..+++++. ++||+|+++.|+|+++...+...
T Consensus        60 ---~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~-~~gd~vl~~~p~~~~~~~~~~~~  133 (392)
T 3b1d_A           60 ---LVYGYTYA--SDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAFT-KEGEAVLINSPVYPPFARSVRLN  133 (392)
Confidence               25668765  7899999999999888887888999999999999999999998 79999999999999999999999


Q ss_pred             CCeEEEEecCCC-CCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEcccccc
Q 009517          236 GGTLVPYYLDEA-TGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE  314 (533)
Q Consensus       236 g~~~~~v~~~~~-~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~  314 (533)
                      |.+++.++++++ ++|.+|++.+++++++.     ++++|++++|+||||.+++.+++++|+++|++||+++|+||+|.+
T Consensus       134 g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~  208 (392)
T 3b1d_A          134 NRKLVSNSLKEENGLFQIDFEQLENDIVEN-----DVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQD  208 (392)
Confidence            999999998643 35779999999999742     688999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCH-HHHHHHHHhhh-cc-ccCChHHH
Q 009517          315 NVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSA-EVREQIYKVAS-VN-LCSNISGQ  391 (533)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~-~~~~~l~~~~~-~~-~~~~~~~q  391 (533)
                      +.+++. ...++..+..++     ..+++++.||||.+ |++|+|+||+++   ++ ++++.+..... .+ .++++++|
T Consensus       209 ~~~~g~-~~~~~~~~~~~~-----~~~~i~~~s~sK~~-~~~G~r~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (392)
T 3b1d_A          209 LTLFGH-EHVSFNTVSPDF-----KDFALVLSSATKTF-NIAGTKNSYAII---ENPTLCAQFKHQQLVNNHHEVSSLGY  278 (392)
Confidence            988653 233433331110     34679999999999 889999999997   54 58888877654 22 35788999


Q ss_pred             HHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCceEecCCceeEEecccCCCHHHHHHHHhcCCC
Q 009517          392 ILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNS-LEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTV  470 (533)
Q Consensus       392 ~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~  470 (533)
                      .++.++|+..          .++++++++.++++++.+.+.|++ +|++.+++++++|++|++++.. +         . 
T Consensus       279 ~a~~~~l~~~----------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~-~---------~-  337 (392)
T 3b1d_A          279 IATETAYRYG----------KPWLVALKAVLEENIQFAVEYFAQEAPRLKVMKPQGTYLIWLDFSDY-G---------L-  337 (392)
Confidence            9888888632          134567788899999999999988 7899999999999999765411 0         0 


Q ss_pred             ChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHH
Q 009517          471 PDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       471 ~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~  525 (533)
                      +...++..+++++||.+.||..|+ ..+.+++||+++.++++|++++++|+++++
T Consensus       338 ~~~~l~~~l~~~~gi~v~~g~~f~-~~~~~~iRi~~~~~~e~i~~~l~~l~~~l~  391 (392)
T 3b1d_A          338 TDDALFTLLHDQAKVILNRGSDYG-SEGELHARLNIAAPKSLVEEICKRIVCCLP  391 (392)
Confidence            123445555567899999999997 345569999998778999999999998875

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=100.00  E-value=2.7e-42  Score=360.85  Aligned_cols=330  Identities=21%  Similarity=0.252  Sum_probs=260.3

Q ss_pred             cccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCC--------------eEEEc-CCcC
Q 009517          161 GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND--------------GILCP-IPQY  225 (533)
Q Consensus       161 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd--------------~Vlv~-~p~~  225 (533)
                      ..|.+..|..+||+++|+++.+.+|+.+++++|++|+|+++|+..+++.++ ++||              +|+++ +|+|
T Consensus        77 ~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~-~~gd~~~~~~~~~~g~~~~vi~~~~p~~  155 (444)
T 3if2_A           77 ANYSNPQGDSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFG-GAFVNEHSQDKESKSVDKSILLPLTPEY  155 (444)
T ss_dssp             HSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSS-EEEECC-------CEEEEEEEESSSSCC
T ss_pred             hccCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHh-CCCccccccccccccccceEEEeCCCCc
Confidence            679999999999999999999999998999999999999999999999998 7887              78876 9999


Q ss_pred             cchHHH------HHHhCCeEEEEecCCCC---CCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHH
Q 009517          226 PLYSAS------IALHGGTLVPYYLDEAT---GWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIV  296 (533)
Q Consensus       226 ~~~~~~------~~~~g~~~~~v~~~~~~---~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~  296 (533)
                      +.|...      +...|..++.++++.++   +|++|+++|+++++..   .+++++|++++||||||.+++.+++++|+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~---~~~~~~v~i~~p~nptG~~~~~~~l~~i~  232 (444)
T 3if2_A          156 IGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALK---EGRIGAICCSRPTNPTGNVLTDEEMAHLA  232 (444)
T ss_dssp             GGGTTCCSSSCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHH---TTCEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             cchhhcccccchhhccCceEEecccccccCccccCCCHHHHHHHHHhc---CCCceEEEeCCCCCCCCCcCCHHHHHHHH
Confidence            998863      34567888888887532   3689999999985431   12799999999999999999999999999


Q ss_pred             HHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHH
Q 009517          297 DFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQI  376 (533)
Q Consensus       297 ~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l  376 (533)
                      ++|++||++||+||+|..+.. + ..+...   ..     ....++|++.||||.  +++|+|+||+++   ++++++.+
T Consensus       233 ~~a~~~~~~li~De~~~~~~~-~-~~~~~~---~~-----~~~~~~i~~~S~sK~--~~~G~r~G~~~~---~~~l~~~~  297 (444)
T 3if2_A          233 EIAKRYDIPLIIDNAYGMPFP-N-IIYSDA---HL-----NWDNNTILCFSLSKI--GLPGMRTGIIVA---DAKVIEAV  297 (444)
T ss_dssp             HHHHHTTCCEEEECTTCTTTT-C-CBCSCC---CC-----CCCTTEEEEEESTTT--TCGGGCCEEEEC---CHHHHHHH
T ss_pred             HHHHHCCCEEEEECCCCCccc-c-cccccc---cc-----cCCCCEEEEechhhc--cCCCCceEEEEE---CHHHHHHH
Confidence            999999999999999985321 1 000000   00     112357999999995  569999999998   99999999


Q ss_pred             HHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHH-HHHHHHHHHHHHHHHHhc-CC--CceEecCCceeEEe
Q 009517          377 YKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDG-ILSSLARRAKTLEDAFNS-LE--GITCNKAEGAMYLF  451 (533)
Q Consensus       377 ~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~-~~--g~~~~~~~gg~~~~  451 (533)
                      ..... .+++++++.|.++..+++...        +.++..+ +++.++++++.+.+.|.+ ++  ++.+..|.+++|+|
T Consensus       298 ~~~~~~~~~~~~~~~~~a~~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~  369 (444)
T 3if2_A          298 SAMNAVVNLAPTRFGAAIATPLVANDR--------IKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLW  369 (444)
T ss_dssp             HHHHHHHHSSCCCHHHHHHHHHHHTSH--------HHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEE
T ss_pred             HHHHHhccCCCChHHHHHHHHHHHcCc--------hhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCCccEEEE
Confidence            88765 567889999999998886432        3333343 677788888888888766 44  46778899999999


Q ss_pred             cccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCC-------CCceEEEEecCCcCcHHHHHHHHHHHH
Q 009517          452 PRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVP-------GTWHFRCTILPQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~-------g~~~iRis~~~~~e~i~~~~~~l~~~l  524 (533)
                      +.++..          +. +...++ ..|.++||.+.||..|+...       +.++|||+++.++++|++++++|++++
T Consensus       370 ~~~~~~----------~~-~~~~l~-~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~~~e~i~~~l~~l~~~~  437 (444)
T 3if2_A          370 LWFKDL----------PI-STLDLY-ERLKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAADEQTLIDGIKVIGEVV  437 (444)
T ss_dssp             EEETTC----------SS-CHHHHH-HHHHHTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSSCHHHHHHHHHHHHHHH
T ss_pred             EEcCCC----------CC-CHHHHH-HHHHHCCeEEecchhhcCCCCCcccccCCCeEEEEEeCCHHHHHHHHHHHHHHH
Confidence            776521          01 234444 44577899999999985321       235899999888999999999999999


Q ss_pred             HHHHH
Q 009517          525 KNFMD  529 (533)
Q Consensus       525 ~~~~~  529 (533)
                      +++.+
T Consensus       438 ~~~~~  442 (444)
T 3if2_A          438 RELYD  442 (444)
T ss_dssp             HHHHT
T ss_pred             HHHHc
Confidence            88764

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=100.00  E-value=3.6e-42  Score=354.24  Aligned_cols=339  Identities=14%  Similarity=0.146  Sum_probs=264.7

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEE--cCChHHHHHHHHHHhc-cCCCCe
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFL--TDGASPAVHMMMQLLI-RSENDG  217 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~--t~G~~~al~~~~~~l~-~~~gd~  217 (533)
                      ++.+.+++.+++.+.   ....|.+..|..+||+++++++.+..+.++++++|++  |+|+++|+..+++.+. ..+||+
T Consensus        46 ~~~v~~a~~~~~~~~---~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~  122 (396)
T 2q7w_A           46 LTSVKKAEQYLLENE---TTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKR  122 (396)
T ss_dssp             CHHHHHHHHHHHHHC---CCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCE
T ss_pred             cHHHHHHHHhhcCcc---cccCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEEEecccchhhHHHHHHHHHHhCCCCE
Confidence            588888888777642   2567999999999999999999765443345789998  9999999999997663 158999


Q ss_pred             EEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHH
Q 009517          218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD  297 (533)
Q Consensus       218 Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~  297 (533)
                      |+++.|+|++|...++..|++++.++++++++|++|++++++++++.   .++++++++++||||||.+++.+++++|++
T Consensus       123 Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~v~~~~p~nptG~~~~~~~l~~l~~  199 (396)
T 2q7w_A          123 VWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEA---QAGDVVLFHGCCHNPTGIDPTLEQWQTLAQ  199 (396)
T ss_dssp             EEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTC---CTTCEEEEECSSCTTTCCCCCHHHHHHHHH
T ss_pred             EEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCHHHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHH
Confidence            99999999999999999999999999865456789999999998752   124778888999999999999999999999


Q ss_pred             HHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCH----HHH
Q 009517          298 FCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSA----EVR  373 (533)
Q Consensus       298 l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~----~~~  373 (533)
                      +|++||+++|+||+|+++.+++.....++..+.. .    . .++|++.||||.+ |++|+|+||+++...++    +++
T Consensus       200 ~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-~----~-~~~i~~~s~sK~~-~~~G~riG~~~~~~~~~~~~~~~~  272 (396)
T 2q7w_A          200 LSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAA-M----H-KELIVASSYSXNF-GLYNERVGACTLVAADSETVDRAF  272 (396)
T ss_dssp             HHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHH-H----C-SCEEEEEECTTTT-TCGGGCCEEEEEECSSHHHHHHHH
T ss_pred             HHHHCCCEEEEecccccccCCccchhHHHHHHHh-c----C-CcEEEEEeccccc-cccccccceEEEEcCCHHHHHHHH
Confidence            9999999999999999988753112233333321 1    1 2579999999999 88999999998511134    455


Q ss_pred             HHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CceEecCCceeE
Q 009517          374 EQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLE---GITCNKAEGAMY  449 (533)
Q Consensus       374 ~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---g~~~~~~~gg~~  449 (533)
                      +.+..... .+.++++++|.++..+|++.    ...+.+.+++++++++++++++.+.+.|+++.   ++.+..|++|+|
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~a~~~~l~~~----~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~  348 (396)
T 2q7w_A          273 SQMKAAIRANYSNPPAHGASVVATILSND----ALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMF  348 (396)
T ss_dssp             HHHHHHHHTTTSSCCHHHHHHHHHHHTSH----HHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHHHCCSSE
T ss_pred             HHHHHHHhhccCCCCcHHHHHHHHHhcCh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceecCCCceE
Confidence            55555443 44556999999999988642    12223456678888999999999999999882   388888999999


Q ss_pred             EecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec-CCcCcHHHHHHHHHHHH
Q 009517          450 LFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-PQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~~~~l~~~l  524 (533)
                      +|++++                . .++..+++++||.+.||           +||+++ .+++++++++++|++++
T Consensus       349 ~~~~~~----------------~-~~~~~~l~~~gv~v~~~-----------~Ris~~~~~~e~i~~~~~~l~~~l  396 (396)
T 2q7w_A          349 SFSGLT----------------K-EQVLRLREEFGVYAVAS-----------GRVNVAGMTPDNMAPLCEAIVAVL  396 (396)
T ss_dssp             EECCCC----------------H-HHHHHHHHHHCEECCTT-----------CEEEGGGCCTTTHHHHHHHHHHHC
T ss_pred             EEecCC----------------H-HHHHHHHHhcCeeecCC-----------ceEEEeecCHHHHHHHHHHHHhcC
Confidence            996543                1 23557788899999873           599998 58999999999998753

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=100.00  E-value=4.9e-41  Score=342.25  Aligned_cols=334  Identities=18%  Similarity=0.229  Sum_probs=273.8

Q ss_pred             ceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHH
Q 009517           98 EILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA  177 (533)
Q Consensus        98 ~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia  177 (533)
                      ++|+|+.|.+.+                      +.       |+.+++++.+.+.+.   ....|++ .|..+||++++
T Consensus        31 ~~i~l~~~~~~~----------------------~~-------~~~v~~a~~~~~~~~---~~~~y~~-~~~~~l~~~la   77 (367)
T 3euc_A           31 GLVKLDAMENPY----------------------RL-------PPALRSELAARLGEV---ALNRYPV-PSSEALRAKLK   77 (367)
T ss_dssp             TCEECCSSCCCC----------------------CC-------CHHHHHHHHHHHHHH---HTTCSCC-CCHHHHHHHHH
T ss_pred             CeeEccCCCCCC----------------------CC-------CHHHHHHHHHHhhhh---hhhcCCC-CcHHHHHHHHH
Confidence            489999998653                      22       789999998888742   1456876 47899999999


Q ss_pred             HHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHH
Q 009517          178 AGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEV  257 (533)
Q Consensus       178 ~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l  257 (533)
                      ++++    .+ ++++|++|+|+++++..+++.++ ++||+|+++.|+|.++...++..|++++.+++++  +|.+|++++
T Consensus        78 ~~~g----~~-~~~~i~~~~g~t~a~~~~~~~~~-~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l  149 (367)
T 3euc_A           78 EVMQ----VP-AGMEVLLGNGSDEIISMLALAAA-RPGAKVMAPVPGFVMYAMSAQFAGLEFVGVPLRA--DFTLDRGAM  149 (367)
T ss_dssp             HHHT----CC-TTCEEEEEEHHHHHHHHHHHHTC-CTTCEEEEEESCSCCSCHHHHTTTCEEEEEECCT--TSCCCHHHH
T ss_pred             HHhC----CC-CcceEEEcCCHHHHHHHHHHHHc-CCCCEEEEcCCCHHHHHHHHHHcCCeEEEecCCC--CCCCCHHHH
Confidence            9984    21 67899999999999999999998 8999999999999999999999999999999875  678999999


Q ss_pred             HHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHc--CCEEEEccccccccccCCCCcccHHHHHhhcCC
Q 009517          258 KKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKE--GLVLLADEVYQENVYVPEKKFHSFKKVSRSMGY  335 (533)
Q Consensus       258 ~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~--~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~  335 (533)
                      ++++++.     ++++|++++||||||.+++.+++++|+++|++|  |+++|+||+|.++.+.+.   ..  .    +  
T Consensus       150 ~~~l~~~-----~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~---~~--~----~--  213 (367)
T 3euc_A          150 LAAMAEH-----QPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESW---MS--R----L--  213 (367)
T ss_dssp             HHHHHHH-----CCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCS---GG--G----G--
T ss_pred             HHHhhcc-----CCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccch---HH--H----H--
Confidence            9999875     789999999999999999999999999999999  999999999999664321   11  1    1  


Q ss_pred             CCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHH
Q 009517          336 GEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAER  415 (533)
Q Consensus       336 ~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~  415 (533)
                       .....++++.||||.  +++|+|+||+++   ++++++.+.... ..++++++++.++..+|+.           .+++
T Consensus       214 -~~~~~~i~~~s~sK~--~~~G~r~G~~~~---~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~-----------~~~~  275 (367)
T 3euc_A          214 -TDFGNLLVMRTVSKL--GLAGIRLGYVAG---DPQWLEQLDKVR-PPYNVNVLTEATALFALEH-----------VAVL  275 (367)
T ss_dssp             -GTCTTEEEEEECCCT--TSCSCCEEEEEE---CHHHHHHHGGGC-CSSCCCHHHHHHHHHHHTT-----------HHHH
T ss_pred             -hhCCCEEEEecchhh--cccccCceeeee---CHHHHHHHHHhC-CCCCCCHHHHHHHHHHhcC-----------HHHH
Confidence             122357899999997  579999999998   999998887655 3577899999999999863           2446


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCC
Q 009517          416 DGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ  495 (533)
Q Consensus       416 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~  495 (533)
                      ++++++++++++.+.+.|+++||+.+. +.+++|+|++++  .             ...+. +.|.++||.+.||..|+ 
T Consensus       276 ~~~~~~~~~~~~~l~~~l~~~~g~~~~-~~~~~~~~~~~~--~-------------~~~l~-~~l~~~gi~v~~~~~~~-  337 (367)
T 3euc_A          276 DEQAAQLRAERSRVAEGMAAHGGVTVF-PSAANFLLARVP--D-------------AAQTF-DRLLARKVLIKNVSKMH-  337 (367)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSTTCEEC-CCSSSEEEEECS--C-------------HHHHH-HHHHTTTEECEECGGGC-
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcEEC-CCCCeEEEEECC--C-------------HHHHH-HHHHHCCeEEEECCccC-
Confidence            778888999999999999999899855 455667886554  1             23333 45678999999999886 


Q ss_pred             CCCCceEEEEecCCcCcHHHHHHHHHHHHH
Q 009517          496 VPGTWHFRCTILPQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       496 ~~g~~~iRis~~~~~e~i~~~~~~l~~~l~  525 (533)
                      ..+.++|||+++ +++++++++++|+++++
T Consensus       338 ~~~~~~iRis~~-~~~~i~~~~~~l~~~l~  366 (367)
T 3euc_A          338 PLLANCLRVTVS-TPEENAQFLEAFAASLQ  366 (367)
T ss_dssp             GGGTTEEEEECC-CHHHHHHHHHHHHHHTC
T ss_pred             CCCCCEEEEecC-CHHHHHHHHHHHHHHhc
Confidence            344559999998 77889999999988753

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=100.00  E-value=2.9e-41  Score=343.45  Aligned_cols=330  Identities=19%  Similarity=0.250  Sum_probs=269.0

Q ss_pred             ceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHH
Q 009517           98 EILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA  177 (533)
Q Consensus        98 ~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia  177 (533)
                      ++|+|+.|.+..                      +.       |+.+++++.+.+..     ...|+ ..+..+||++++
T Consensus        33 ~~i~l~~~~~~~----------------------~~-------~~~v~~a~~~~~~~-----~~~y~-~~~~~~lr~~la   77 (363)
T 3ffh_A           33 KITKLSSNENPL----------------------GT-------SKKVAAIQANSSVE-----TEIYP-DGWASSLRKEVA   77 (363)
T ss_dssp             CCEECSSCSCTT----------------------CC-------CHHHHHHHHTCBSC-----CCBC-----CHHHHHHHH
T ss_pred             ceEEccCCCCCC----------------------CC-------CHHHHHHHHHHHHH-----hhcCC-CcchHHHHHHHH
Confidence            399999998754                      22       68888888776543     45675 457899999999


Q ss_pred             HHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHH
Q 009517          178 AGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEV  257 (533)
Q Consensus       178 ~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l  257 (533)
                      ++++      +++++|++|+|+++++..+++.++ ++||+|+++.|+|+.+...++..|.+++.+++++  ++.+|++++
T Consensus        78 ~~~~------~~~~~v~~~~g~t~a~~~~~~~~~-~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l  148 (363)
T 3ffh_A           78 DFYQ------LEEEELIFTAGVDELIELLTRVLL-DTTTNTVMATPTFVQYRQNALIEGAEVREIPLLQ--DGEHDLEGM  148 (363)
T ss_dssp             HHHT------CCGGGEEEESSHHHHHHHHHHHHC-STTCEEEEEESSCHHHHHHHHHHTCEEEEEECCT--TSCCCHHHH
T ss_pred             HHhC------CChhhEEEeCCHHHHHHHHHHHHc-cCCCEEEEcCCChHHHHHHHHHcCCEEEEecCCC--CCCcCHHHH
Confidence            9985      678899999999999999999998 7999999999999999999999999999999885  578999999


Q ss_pred             HHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCC
Q 009517          258 KKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE  337 (533)
Q Consensus       258 ~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~  337 (533)
                      ++++++      ++++|++++|+||||.+++.+++.+|+++|++ |+++|+||+|.++.+ +.  ..+.....      .
T Consensus       149 ~~~i~~------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~-~~~li~De~~~~~~~-~~--~~~~~~~~------~  212 (363)
T 3ffh_A          149 LNAIDE------KTTIVWICNPNNPTGNYIELADIQAFLDRVPS-DVLVVLDEAYIEYVT-PQ--PEKHEKLV------R  212 (363)
T ss_dssp             HHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHTTSCT-TSEEEEECTTGGGCS-SC--CCCCGGGG------G
T ss_pred             HHhccc------CCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCC-CcEEEEeCchHhhcC-cc--ccCHHHHh------h
Confidence            999976      79999999999999999999999998888877 999999999999877 43  22222221      1


Q ss_pred             CCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHH
Q 009517          338 KDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDG  417 (533)
Q Consensus       338 ~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~  417 (533)
                      ...++|++.||||.+ |++|+|+||+++   ++++++.+..... +++++++++.++..+|++           .+++++
T Consensus       213 ~~~~~i~~~s~sK~~-g~~G~r~G~~~~---~~~~~~~l~~~~~-~~~~~~~~~~~~~~~l~~-----------~~~~~~  276 (363)
T 3ffh_A          213 TYKNLIITRTFSKIY-GLASARVGYGIA---DKEIIRQLNIVRP-PFNTTSIGQKLAIEAIKD-----------QAFIGE  276 (363)
T ss_dssp             TCTTEEEEEESSSTT-CCSSCCCEEEEE---CHHHHHHHHHTCC-SCCCBHHHHHHHHHHHHC-----------HHHHHH
T ss_pred             cCCCEEEEeechhhh-cCchhceeeeec---CHHHHHHHHHhCC-CCCCCHHHHHHHHHHhcC-----------HHHHHH
Confidence            233679999999999 889999999998   9999999887664 578899999999988852           145677


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCC
Q 009517          418 ILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVP  497 (533)
Q Consensus       418 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~  497 (533)
                      ++++++++++.+.+.|++++|+.+.++.+ .|+|++++.              +...+... |.++||.+.||..|+. +
T Consensus       277 ~~~~~~~~~~~l~~~l~~~~g~~~~~~~~-~~~~~~~~~--------------~~~~~~~~-l~~~gi~v~~g~~~~~-~  339 (363)
T 3ffh_A          277 CRTSNANGIKQYEAFAKRFEKVKLYPANG-NFVLIDLGI--------------EAGTIFSY-LEKNGYITRSGAALGF-P  339 (363)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCEECCCCS-SEEEEECSS--------------CHHHHHHH-HHHTTEECEETTTTTC-T
T ss_pred             HHHHHHHHHHHHHHHHhhCCCceECCCCC-eEEEEECCC--------------CHHHHHHH-HHHCCeEEEeCccCCC-C
Confidence            88889999999999999966999877665 467866541              23344444 4568999999999974 3


Q ss_pred             CCceEEEEecCCcCcHHHHHHHHHHH
Q 009517          498 GTWHFRCTILPQEDKIPAIVTRLTDF  523 (533)
Q Consensus       498 g~~~iRis~~~~~e~i~~~~~~l~~~  523 (533)
                        ++|||+++ +++++++++++|+++
T Consensus       340 --~~iRis~~-~~~~i~~~~~~l~~~  362 (363)
T 3ffh_A          340 --TAVRITIG-KEEDNSAVIALLEKL  362 (363)
T ss_dssp             --TEEEEECC-CHHHHHHHHHHHHHH
T ss_pred             --CeEEEECC-CHHHHHHHHHHHHHh
Confidence              39999998 778899999999875

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=100.00  E-value=3.6e-41  Score=341.44  Aligned_cols=336  Identities=18%  Similarity=0.217  Sum_probs=273.6

Q ss_pred             cceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHH
Q 009517           97 DEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTI  176 (533)
Q Consensus        97 ~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~ai  176 (533)
                      +.+|||+.|.+..                      +.       |+.+++++.+.+..     ...|+ ..|..+||+++
T Consensus        16 ~~~i~l~~~~~~~----------------------~~-------~~~v~~a~~~~~~~-----~~~y~-~~~~~~l~~~l   60 (354)
T 3ly1_A           16 DNPIRINFNENPL----------------------GM-------SPKAQAAARDAVVK-----ANRYA-KNEILMLGNKL   60 (354)
T ss_dssp             SSCEECSSCCCSS----------------------CC-------CHHHHHHHHHTGGG-----TTSCC-HHHHHHHHHHH
T ss_pred             CceEEccCCCCCC----------------------CC-------CHHHHHHHHHHHhh-----CcCCC-CCchHHHHHHH
Confidence            3499999998664                      22       78999999888775     45674 45789999999


Q ss_pred             HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHH
Q 009517          177 AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE  256 (533)
Q Consensus       177 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~  256 (533)
                      +++++      +++++|++|+|+++++..+++.++ ++||+|+++.|+|+++...++..|.+++.++.++  ++++|+++
T Consensus        61 a~~~~------~~~~~i~~~~g~~~a~~~~~~~l~-~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~  131 (354)
T 3ly1_A           61 AAHHQ------VEAPSILLTAGSSEGIRAAIEAYA-SLEAQLVIPELTYGDGEHFAKIAGMKVTKVKMLD--NWAFDIEG  131 (354)
T ss_dssp             HHHTT------SCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEESSSCTHHHHHHHHTTCEEEEECCCT--TSCCCHHH
T ss_pred             HHHhC------CChHHEEEeCChHHHHHHHHHHHh-CCCCeEEECCCCchHHHHHHHHcCCEEEEecCCC--CCCCCHHH
Confidence            99974      668899999999999999999998 8999999999999999999999999999999874  47999999


Q ss_pred             HHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCC
Q 009517          257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG  336 (533)
Q Consensus       257 l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~  336 (533)
                      |++++++    .+++++|++++|+||||.+++.+++++|+++| ++|+++|+||+|.++.+++.  ..+.......    
T Consensus       132 l~~~l~~----~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~--~~~~~~~~~~----  200 (354)
T 3ly1_A          132 LKAAVAA----YSGPSIVYLVNPNNPTGTITPADVIEPWIASK-PANTMFIVDEAYAEFVNDPR--FRSISPMITQ----  200 (354)
T ss_dssp             HHHHHHT----CSSCEEEEEESSCTTTCCCCCHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTT--CCCSHHHHHT----
T ss_pred             HHHHhcc----CCCCCEEEEeCCCCCcCCCcCHHHHHHHHHhC-CCCeEEEEeccHHHhccccc--cCCHHHHhhh----
Confidence            9999983    11799999999999999999999999999999 89999999999999887653  2233233222    


Q ss_pred             CCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHH
Q 009517          337 EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERD  416 (533)
Q Consensus       337 ~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~  416 (533)
                       ...+++++.||||++ |++|+|+||+++   ++++++.+...... ++++++++.++..+|+.           .++++
T Consensus       201 -~~~~~i~~~s~sK~~-g~~G~r~G~~~~---~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~-----------~~~~~  263 (354)
T 3ly1_A          201 -GAENIILLKTFSKIH-AMAGMRVGYAVA---HPTVIALMGRYVAG-EKINFSGVDAALASMND-----------SAFIT  263 (354)
T ss_dssp             -TCSSEEEEEESSSTT-CCGGGCCEEEEC---CHHHHHHHGGGTTC-SCCCHHHHHHHHHHTTC-----------HHHHH
T ss_pred             -cCCCEEEEeeChhhc-cChhhhheeeec---CHHHHHHHHHhcCC-CCCCHHHHHHHHHHhcC-----------HHHHH
Confidence             113579999999999 899999999998   99999988776644 78899999999999863           14567


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCC
Q 009517          417 GILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQV  496 (533)
Q Consensus       417 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~  496 (533)
                      +++++++++++++.+.|+++ |+.+.++.| .|+|++++.              +...+.. .|.++||.+. |..++  
T Consensus       264 ~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~-~~~~~~~~~--------------~~~~~~~-~l~~~gi~v~-g~~~~--  323 (354)
T 3ly1_A          264 YSKKSNDVSRQILLKALEDL-KLPYLPSEG-NFVFHQLVV--------------PLKDYQT-HMADAGVLIG-RAFPP--  323 (354)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-TCCBCCCCS-SEEEEECSS--------------CHHHHHH-HHHHTTEECC-CCCTT--
T ss_pred             HHHHHHHHHHHHHHHHHHHC-CCeECCCCc-eEEEEECCC--------------CHHHHHH-HHHHCCEEEe-ecCCC--
Confidence            78888999999999999988 888776655 567866541              2334444 4556899999 77554  


Q ss_pred             CCCceEEEEecCCcCcHHHHHHHHHHHHHH
Q 009517          497 PGTWHFRCTILPQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       497 ~g~~~iRis~~~~~e~i~~~~~~l~~~l~~  526 (533)
                       +.++|||+++ +++++++++++|++++++
T Consensus       324 -~~~~iRis~~-~~~~i~~~~~~l~~~l~~  351 (354)
T 3ly1_A          324 -ADNWCRISLG-TPQEMQWVADTMREFRKK  351 (354)
T ss_dssp             -CTTEEEEECC-CHHHHHHHHHHHHHHHHT
T ss_pred             -CCCEEEEEcC-CHHHHHHHHHHHHHHHHh
Confidence             2349999998 678899999999988764

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=100.00  E-value=8e-41  Score=340.42  Aligned_cols=321  Identities=18%  Similarity=0.261  Sum_probs=252.6

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      |+.+++++.+++..     ...|++ .|..+||++++++++      +++++|++|+|+++++..+++.+   +||+|++
T Consensus        39 ~~~v~~a~~~~~~~-----~~~y~~-~~~~~l~~~la~~~~------~~~~~v~~~~g~~~al~~~~~~~---~gd~vl~  103 (364)
T 1lc5_A           39 PVSVKRALIDNLDC-----IERYPD-ADYFHLHQALARHHQ------VPASWILAGNGETESIFTVASGL---KPRRAMI  103 (364)
T ss_dssp             CHHHHHHHHHTGGG-----GGSCCC-TTCHHHHHHHHHHHT------SCGGGEEEESSHHHHHHHHHHHH---CCSEEEE
T ss_pred             CHHHHHHHHHHHHH-----hhcCCC-CCHHHHHHHHHHHHC------cCHHHEEECCCHHHHHHHHHHHc---CCCeEEE
Confidence            68888888887754     456865 479999999999984      56789999999999999999988   4699999


Q ss_pred             cCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHH
Q 009517          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (533)
Q Consensus       221 ~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~  300 (533)
                      +.|+|+++...++..|.+++.++.+.+++|.+ ++++.+.+++      ++++|++++||||||.+++.+++++|+++|+
T Consensus       104 ~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~-l~~~~~~~~~------~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~  176 (364)
T 1lc5_A          104 VTPGFAEYGRALAQSGCEIRRWSLREADGWQL-TDAILEALTP------DLDCLFLCTPNNPTGLLPERPLLQAIADRCK  176 (364)
T ss_dssp             EESCCTHHHHHHHHTTCEEEEEECCGGGTTCC-CTTHHHHCCT------TCCEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred             eCCCcHHHHHHHHHcCCeEEEEeCCcccccch-hHHHHHhccC------CCCEEEEeCCCCCCCCCCCHHHHHHHHHHhh
Confidence            99999999999999999999999876444544 4545544432      6889999999999999999999999999999


Q ss_pred             HcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEE-EecCCHHHHHHHHHh
Q 009517          301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYME-VTGFSAEVREQIYKV  379 (533)
Q Consensus       301 ~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~-~~~~~~~~~~~l~~~  379 (533)
                      +||+++|+||+|.++.+++. +..   .+   +   ....+++++.||||.+ |++|+|+||++ +   ++++++.+...
T Consensus       177 ~~~~~li~De~~~~~~~~~~-~~~---~~---~---~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~---~~~~~~~l~~~  242 (364)
T 1lc5_A          177 SLNINLILDEAFIDFIPHET-GFI---PA---L---KDNPHIWVLRSLTKFY-AIPGLRLGYLVNS---DDAAMARMRRQ  242 (364)
T ss_dssp             HHTCEEEEECTTGGGSTTCC-CSG---GG---C---TTCTTEEEEEESTTTT-TCTTTCCEEEECC---CHHHHHHHHHH
T ss_pred             hcCcEEEEECcChhhccCcc-chh---hH---h---ccCCCEEEEEECchhh-cCCccceEEEEEC---CHHHHHHHHHh
Confidence            99999999999999877532 111   11   1   1123478999999999 88999999999 7   99999888776


Q ss_pred             hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHH
Q 009517          380 ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEK  459 (533)
Q Consensus       380 ~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~  459 (533)
                      . .++++++++|.++.++|+.           .+++++++++++++++++.+.|+++||+.+.++.| .|+|++++.   
T Consensus       243 ~-~~~~~~~~~~~~~~~~l~~-----------~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g-~~~~~~~~~---  306 (364)
T 1lc5_A          243 Q-MPWSVNALAALAGEVALQD-----------SAWQQATWHWLREEGARFYQALCQLPLLTVYPGRA-NYLLLRCER---  306 (364)
T ss_dssp             S-CTTCSCHHHHHHHHHGGGC-----------HHHHHHHHHHHHHHHHHHHHHHHTSTTEEECCCSS-SEEEEEESC---
T ss_pred             C-CCCCCCHHHHHHHHHHHhC-----------cHHHHHHHHHHHHHHHHHHHHHhcCCCCEECCCCC-eEEEEECCC---
Confidence            5 3578899999999999863           13567788889999999999999888998876655 566755541   


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHHHH
Q 009517          460 AIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~  527 (533)
                                 +...++.. |.++||.+.||..|+. .+.++|||+++. .+++++++++|+++++++
T Consensus       307 -----------~~~~l~~~-l~~~gi~v~~g~~~~~-~~~~~iRis~~~-~~~~~~l~~~l~~~~~~~  360 (364)
T 1lc5_A          307 -----------EDIDLQRR-LLTQRILIRSCANYPG-LDSRYYRVAIRS-AAQNERLLAALRNVLTGI  360 (364)
T ss_dssp             -----------TTCCHHHH-HHTTTEECEECTTSTT-CCTTEEEEECCC-HHHHHHHHHHHHHHC---
T ss_pred             -----------cHHHHHHH-HHHCCcEEeeCcccCC-CCCCEEEEEeCC-HHHHHHHHHHHHHHhhcc
Confidence                       01223334 4567999999999863 334599999874 566888888888887665

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=100.00  E-value=1.3e-40  Score=342.47  Aligned_cols=335  Identities=19%  Similarity=0.209  Sum_probs=259.8

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEE--cCChHHHHHHHHHHhcc-CCCCe
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFL--TDGASPAVHMMMQLLIR-SENDG  217 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~--t~G~~~al~~~~~~l~~-~~gd~  217 (533)
                      ++.+.+++.+++...   ....|++..|..+||+++++++.+. +  +++++|++  |+|+++|+..+++.+.. .+||+
T Consensus        46 ~~~v~~a~~~~~~~~---~~~~y~~~~g~~~lr~~la~~~~~~-~--~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~  119 (394)
T 2ay1_A           46 MRAVHAAEQRMLETE---TTKTYAGLSGEPEFQKAMGELILGD-G--LKSETTATLATVGGTGALRQALELARMANPDLR  119 (394)
T ss_dssp             CHHHHHHHHHHHHHC---CCCCCCCSSCCHHHHHHHHHHHHGG-G--CCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCC
T ss_pred             cHHHHHHHHHhcCCc---ccCCCCCCCCcHHHHHHHHHHHhCC-C--CCcccEEEEecCCchhHHHHHHHHHHhcCCCCE
Confidence            578888887777642   2567999899999999999998532 2  36789999  99999999999988751 38999


Q ss_pred             EEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHH
Q 009517          218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD  297 (533)
Q Consensus       218 Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~  297 (533)
                      |+++.|+|+++...++..|.+++.++++.++++++|++++++++++.   .++++++++++||||||.+++.+++++|++
T Consensus       120 vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~~~~~~~~nptG~~~~~~~l~~i~~  196 (394)
T 2ay1_A          120 VFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAA---KKGDMVLLHGCCHNPTGANLTLDQWAEIAS  196 (394)
T ss_dssp             EEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTC---CTTCEEEEESSSCTTTCCCCCHHHHHHHHH
T ss_pred             EEEcCCCChhHHHHHHHcCCceEEEecccccCCccCHHHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHH
Confidence            99999999999999999999999999865456789999999999752   123677777899999999999999999999


Q ss_pred             HHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHH----
Q 009517          298 FCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVR----  373 (533)
Q Consensus       298 l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~----  373 (533)
                      +|++||+++|+||+|.++.+++.....++..+. ..   .+  ++|++.||||.+ |++|+|+||+++...+++++    
T Consensus       197 ~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~-~~---~~--~~i~~~s~sK~~-~~~G~riG~~~~~~~~~~~~~~l~  269 (394)
T 2ay1_A          197 ILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIA-SR---IP--EVLIAASCSKNF-GIYRERTGCLLALCADAATRELAQ  269 (394)
T ss_dssp             HHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHH-HH---CS--SEEEEEECTTTT-TCGGGCEEEEEEECSSHHHHHHHH
T ss_pred             HHHHCCCEEEEecCccccccCcccchHHHHHHh-hc---CC--CEEEEEeccCCC-cCcCCccceEEEEeCCHHHHHHHH
Confidence            999999999999999998774311122332221 21   12  478999999999 88999999998522245544    


Q ss_pred             HHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CceEecCCceeE
Q 009517          374 EQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLE---GITCNKAEGAMY  449 (533)
Q Consensus       374 ~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---g~~~~~~~gg~~  449 (533)
                      +.+..... .+.++++++|.++..+|++.    ...+.+.+++++++++++++++++.+.|+++.   ++.+..+++|+|
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~a~~~~l~~~----~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~  345 (394)
T 2ay1_A          270 GAMAFLNRQTYSFPPFHGAKIVSTVLTTP----ELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMF  345 (394)
T ss_dssp             HHHHHHHHTTTSSCCCHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHHHCCSSE
T ss_pred             HHHHHHHhhhcCCCChHHHHHHHHHhcCh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeEEcCCceEE
Confidence            33333333 44456899999998888632    11223445678889999999999999998872   488888899999


Q ss_pred             EecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec-CCcCcHHHHHHHHHHH
Q 009517          450 LFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-PQEDKIPAIVTRLTDF  523 (533)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~~~~l~~~  523 (533)
                      +|++++  .              . .+..+++++||.+.||           +||+++ .+++++++++++|+++
T Consensus       346 ~~~~~~--~--------------~-~~~~~l~~~gi~v~~~-----------~Ris~~~~~~~~i~~~~~~l~~~  392 (394)
T 2ay1_A          346 SRLGAT--P--------------E-QVKRIKEEFGIYMVGD-----------SRINIAGLNDNTIPILARAIIEV  392 (394)
T ss_dssp             EECCCC--H--------------H-HHHHHHHHHCEECCTT-----------CEEEGGGCCTTTHHHHHHHHHHH
T ss_pred             EeeCCC--H--------------H-HHHHHHHhCCEEecCC-----------CeEEeecCCHhhHHHHHHHHHHc
Confidence            996543  1              2 2457778899999873           499997 6899999999999875

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=100.00  E-value=2.9e-40  Score=335.31  Aligned_cols=300  Identities=20%  Similarity=0.313  Sum_probs=244.7

Q ss_pred             ccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCC-CeEEEcCCcCcchHHHHHHhCCe
Q 009517          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-DGILCPIPQYPLYSASIALHGGT  238 (533)
Q Consensus       160 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vlv~~p~~~~~~~~~~~~g~~  238 (533)
                      ...|++.. ..+||+++|++++      +++++|++|+|+++++..+++.++ ++| |+|+++.|+|++|...++..|.+
T Consensus        52 ~~~Y~~~~-~~~lr~~la~~~~------~~~~~v~~~~G~~~ai~~~~~~~~-~~g~d~Vl~~~p~~~~~~~~~~~~g~~  123 (356)
T 1fg7_A           52 LNRYPECQ-PKAVIENYAQYAG------VKPEQVLVSRGADEGIELLIRAFC-EPGKDAILYCPPTYGMYSVSAETIGVE  123 (356)
T ss_dssp             TTSCCCSS-CHHHHHHHHHHHT------SCGGGEEEESHHHHHHHHHHHHHC-CTTTCEEEECSSSCTHHHHHHHHHTCE
T ss_pred             hccCCCcc-HHHHHHHHHHHhC------CChHHEEEcCCHHHHHHHHHHHHh-CCCCCEEEEeCCChHHHHHHHHHcCCE
Confidence            56798764 8999999999984      667899999999999999999998 799 99999999999999999999999


Q ss_pred             EEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEcccccccccc
Q 009517          239 LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYV  318 (533)
Q Consensus       239 ~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~  318 (533)
                      ++.+++++  +|++|+++++++++       ++++|++++||||||.+++.+++++|+++|+ +|+++|+||+|.++.. 
T Consensus       124 ~~~v~~~~--~~~~d~~~l~~~i~-------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~-  192 (356)
T 1fg7_A          124 CRTVPTLD--NWQLDLQGISDKLD-------GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCP-  192 (356)
T ss_dssp             EEECCCCT--TSCCCHHHHHTSCT-------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSG-
T ss_pred             EEEeeCCC--CCCCCHHHHHHHhc-------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcC-
Confidence            99998863  67899999988774       4899999999999999999999999999999 9999999999998652 


Q ss_pred             CCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhccccCChHHHHHHHHHc
Q 009517          319 PEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVM  398 (533)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~~L  398 (533)
                      +    .++..+..      ...+++++.||||.+ |++|+|+||+++   ++++++.+..... .+++++++|.++.++|
T Consensus       193 ~----~~~~~~~~------~~~~~i~~~s~sK~~-g~~G~r~G~~~~---~~~~~~~l~~~~~-~~~~~~~~~~a~~~~l  257 (356)
T 1fg7_A          193 Q----ASLAGWLA------EYPHLAILRTLSKAF-ALAGLRCGFTLA---NEEVINLLMKVIA-PYPLSTPVADIAAQAL  257 (356)
T ss_dssp             G----GCSGGGTT------TCTTEEEEEESSSTT-CCGGGCCEEEEE---CHHHHHHHHHHSC-SSCSCHHHHHHHHHHT
T ss_pred             C----CcHHHHHh------hCCCEEEEecchHhh-cCchhhhEEEEe---CHHHHHHHHHhcC-CCCCCHHHHHHHHHHh
Confidence            1    12112211      123479999999998 899999999998   9999998877654 4578999999999998


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHH
Q 009517          399 SPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRR  478 (533)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (533)
                      ++.        .+ +++++++++++++++++.+.|++++++..+.|.+++|+|++++               +...++..
T Consensus       258 ~~~--------~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~~~  313 (356)
T 1fg7_A          258 SPQ--------GI-VAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFK---------------ASSAVFKS  313 (356)
T ss_dssp             SHH--------HH-HHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEET---------------THHHHHHH
T ss_pred             cCc--------cH-HHHHHHHHHHHHHHHHHHHHHHhCCCceEECCCCCeEEEEECC---------------CHHHHHHH
Confidence            621        11 2367788889999999999999985544455667788897654               12334444


Q ss_pred             HHHccceEEEc-CCCCCCCCCCceEEEEecCCcCcHHHHHHHHHH
Q 009517          479 LLNATGIVLVP-GSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTD  522 (533)
Q Consensus       479 ll~~~gV~v~p-g~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~  522 (533)
                       |.++||.+.| |..|+. .+  ++||+++ +++++++++++|++
T Consensus       314 -L~~~gI~v~~~g~~~~~-~~--~iRis~~-~~~e~~~~~~~l~~  353 (356)
T 1fg7_A          314 -LWDQGIILRDQNKQPSL-SG--CLRITVG-TREESQRVIDALRA  353 (356)
T ss_dssp             -HHHTTEECEECTTSTTC-TT--EEEEECC-CHHHHHHHHHHHHT
T ss_pred             -HHHCCEEEEECCCCCCC-CC--eEEEEeC-CHHHHHHHHHHHHh
Confidence             4688999999 888873 33  9999998 46788888888865

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=100.00  E-value=1.3e-39  Score=330.80  Aligned_cols=318  Identities=18%  Similarity=0.248  Sum_probs=255.7

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      |+.+++++.+++..     ...|+ ..+..++|++++++++      +++++|++|+|+++++..+++.+     |+|++
T Consensus        41 ~~~v~~a~~~~~~~-----~~~y~-~~~~~~l~~~la~~~~------~~~~~i~~~~g~t~al~~~~~~~-----d~vi~  103 (361)
T 3ftb_A           41 PKSFLNNIDEGIKN-----LGVYP-DVNYRRLNKSIENYLK------LKDIGIVLGNGASEIIELSISLF-----EKILI  103 (361)
T ss_dssp             CHHHHTTHHHHHHG-----GGSCC-CTTCHHHHHHHHHHHT------CCSCEEEEESSHHHHHHHHHTTC-----SEEEE
T ss_pred             CHHHHHHHHHHHHH-----hcCCC-CccHHHHHHHHHHHhC------CCcceEEEcCCHHHHHHHHHHHc-----CcEEE
Confidence            78899999888876     45674 4678999999999984      67889999999999999998876     79999


Q ss_pred             cCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHH
Q 009517          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (533)
Q Consensus       221 ~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~  300 (533)
                      +.|+|+++...++..|++++.++++++.  +++++++++++++       +++|++++||||||.+++.+++++|+++|+
T Consensus       104 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~l~~~l~~-------~~~v~i~~p~nptG~~~~~~~l~~i~~~~~  174 (361)
T 3ftb_A          104 IVPSYAEYEINAKKHGVSVVFSYLDENM--CIDYEDIISKIDD-------VDSVIIGNPNNPNGGLINKEKFIHVLKLAE  174 (361)
T ss_dssp             EESCCTHHHHHHHHTTCEEEEEECCTTS--CCCHHHHHHHTTT-------CSEEEEETTBTTTTBCCCHHHHHHHHHHHH
T ss_pred             ecCChHHHHHHHHHcCCeEEEeecCccc--CCCHHHHHHhccC-------CCEEEEeCCCCCCCCCCCHHHHHHHHHHhh
Confidence            9999999999999999999999998654  5677888888752       789999999999999999999999999999


Q ss_pred             HcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhh
Q 009517          301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA  380 (533)
Q Consensus       301 ~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~  380 (533)
                      +||+++|+||+|.++.++ .  ..+.....      ....+++++.||||.+ |++|+|+||++.  .++++++.+....
T Consensus       175 ~~~~~li~De~~~~~~~~-~--~~~~~~~~------~~~~~~i~~~s~sK~~-~~~G~r~g~~~~--~~~~~~~~~~~~~  242 (361)
T 3ftb_A          175 EKKKTIIIDEAFIEFTGD-P--SSSFVGEI------KNYSCLFIIRAMTKFF-AMPGIRFGYGIT--NNKEIAAKIKAKQ  242 (361)
T ss_dssp             HHTCEEEEECSSGGGTCC-T--TSSSGGGT------TTCSSEEEEEESSSTT-SCGGGCCEEEEE--SCHHHHHHHHTTS
T ss_pred             hcCCEEEEECcchhhcCC-c--ccchhHhc------ccCCCEEEEeeChhhc-CCCCcceeEEEe--CCHHHHHHHHhhC
Confidence            999999999999998875 2  12211211      1223578999999999 889999999983  2899998887655


Q ss_pred             hccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce-EecCCceeEEecccCCCHH
Q 009517          381 SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGIT-CNKAEGAMYLFPRIQLPEK  459 (533)
Q Consensus       381 ~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~~gg~~~~~~~~~~~~  459 (533)
                      . +++++++++.++.++|++           .+++++++++++++++.+.+.|+++|++. +.++.|+ |+|++++.   
T Consensus       243 ~-~~~~~~~~~~~~~~~l~~-----------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~---  306 (361)
T 3ftb_A          243 N-PWNINCFAEMAAINCLKD-----------TNYIEESLLWIKKERKRFIEELNKIGFIKRVFSPHAN-FVLCRLEN---  306 (361)
T ss_dssp             C-TTCSCHHHHHHHHHTSSC-----------HHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECCSSS-EEEEEESS---
T ss_pred             C-CCCCCHHHHHHHHHHhcC-----------HHHHHHHHHHHHHHHHHHHHHHHhCCCCceecCCCCe-EEEEEcCC---
Confidence            3 578899999999999863           24567788889999999999999998898 7777765 46655541   


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHH
Q 009517          460 AIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~  525 (533)
                                .+...++.. |.++||.+.||..|+ ..+.++|||+++ +.++++++++.|+++.+
T Consensus       307 ----------~~~~~l~~~-l~~~gi~v~~g~~~~-~~~~~~iRis~~-~~~~~~~l~~~l~~~~~  359 (361)
T 3ftb_A          307 ----------ISGEKLYDS-LLKEDIVIRRCCNFI-GLDDSFVRFAIK-DEKKNTKFLRALKGVEN  359 (361)
T ss_dssp             ----------SCHHHHHHH-HHTTTEECEECTTST-TCCTTEEEEECC-CHHHHHHHHHHHHHHHH
T ss_pred             ----------CCHHHHHHH-HHHCCeEEeeCccCC-CCCCCEEEEEcC-CHHHHHHHHHHHHHHHh
Confidence                      123444444 455699999999997 344569999998 45566777777776654

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=100.00  E-value=1.5e-41  Score=349.17  Aligned_cols=303  Identities=16%  Similarity=0.188  Sum_probs=236.7

Q ss_pred             ccccCCCccc-----HHHHHHHHHHHHhhcCCCCCC-CCEEEcCChHHHHHHHHHHhccCCCC----eEEEcCCcCcchH
Q 009517          160 TGAYSHSQGI-----KGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSEND----GILCPIPQYPLYS  229 (533)
Q Consensus       160 ~~~Y~~~~G~-----~~lr~aia~~~~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~~~gd----~Vlv~~p~~~~~~  229 (533)
                      ...|++..|.     ++||+++|++++ .+|+.+.+ ++|++|+|+++++..++++++ ++||    +|++++|+|..|.
T Consensus        56 ~~~Y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~i~~t~G~~~al~~~~~~l~-~~Gd~~~~~Vlv~~P~y~~~~  133 (391)
T 3bwn_A           56 MSYFSDMTNLCWFLEPELEDAIKDLHG-VVGNAATEDRYIVVGTGSTQLCQAAVHALS-SLARSQPVSVVAAAPFYSTYV  133 (391)
T ss_dssp             CSSCSCTTSSSTTSCHHHHHHHHHHHH-HHCSBCCSSSEEEEEEHHHHHHHHHHHHHH-HTSSSSSEEEEECSSCCTHHH
T ss_pred             hhcCCCCCCcccccCHHHHHHHHHHHH-hcCCCCCCCCeEEEeCChHHHHHHHHHHhc-CCCCCCcceEEEcCCCchhHH
Confidence            5679999998     999999999998 57888877 599999999999999999998 7999    9999999999999


Q ss_pred             HHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEc
Q 009517          230 ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLAD  309 (533)
Q Consensus       230 ~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~D  309 (533)
                      ..++..|++++.++++.+   +++        .+      ++++|++++||||||.+++     +|++.++.++++||+|
T Consensus       134 ~~~~~~g~~~~~~~~d~~---~l~--------~~------~~k~v~l~~p~NPtG~~~~-----~l~~~~~~~~~~ii~D  191 (391)
T 3bwn_A          134 EETTYVRSGMYKWEGDAW---GFD--------KK------GPYIELVTSPNNPDGTIRE-----TVVNRPDDDEAKVIHD  191 (391)
T ss_dssp             HHHHTTCBTTEEEEEEST---TCC--------CC------SCEEEEEESSCTTTCCCCC-----CCC-----CCCEEEEE
T ss_pred             HHHHHcCCeEEEecCCHH---HcC--------CC------CCEEEEECCCCCCCchhHH-----HHHHHhhcCCCEEEEe
Confidence            999999999999988754   232        12      7899999999999999996     3444222233999999


Q ss_pred             cccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCCh
Q 009517          310 EVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNI  388 (533)
Q Consensus       310 e~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~  388 (533)
                      |+|..    +.  ..++..         ...++|++.||||++ |++|+|+||+++  .++++++.+..... .+++++.
T Consensus       192 e~y~~----~~--~~~l~~---------~~~~~i~~~S~SK~~-g~~GlRiG~~~~--~~~~l~~~l~~~~~~~~~~~~~  253 (391)
T 3bwn_A          192 FAYYW----PH--YTPITR---------RQDHDIMLFTFSKIT-GHAGSRIGWALV--KDKEVAKKMVEYIIVNSIGVSK  253 (391)
T ss_dssp             CTTCS----TT--TSCCCC---------CBCCSEEEEEHHHHH-SCGGGCEEEEEE--CCHHHHHHHHHHHHHHHSSCCH
T ss_pred             CCCCC----CC--CCcccc---------CCCCeEEEEechhhc-CCCccceEEEEe--cCHHHHHHHHHHhcccccCCCH
Confidence            99973    21  111111         123579999999998 899999999985  37899999988775 5688899


Q ss_pred             HHHHHHHHHcCCCCCCChhHH----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecC-------------CceeEEe
Q 009517          389 SGQILASLVMSPPKVGDESYE----SYCAERDGILSSLARRAKTLEDAFNSLEGITCNKA-------------EGAMYLF  451 (533)
Q Consensus       389 ~~q~a~~~~L~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~-------------~gg~~~~  451 (533)
                      ++|.++..+|++..    .+-    .+.++++++++.++++++.+.+.|++++|+.+..|             .+|+|+|
T Consensus       254 ~~q~a~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~  329 (391)
T 3bwn_A          254 ESQVRTAKILNVLK----ETCKSESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAW  329 (391)
T ss_dssp             HHHHHHHHHHHHHH----HHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEE
T ss_pred             HHHHHHHHHHhCcc----hhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcceEEE
Confidence            99999998885310    000    01245678899999999999999999877776544             4556899


Q ss_pred             cccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHHH
Q 009517          452 PRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~  526 (533)
                      ++++.               . .++..+|+++||.+.||..|+.  +.++||||++.++++|++++++|++++++
T Consensus       330 ~~~~~---------------~-~~~~~~l~~~gV~v~pg~~fg~--~~~~iRis~~~~~e~i~~~~~~L~~~~~~  386 (391)
T 3bwn_A          330 LGTKE---------------E-TDLVSELRRHKVMSRAGERCGS--DKKHVRVSMLSREDVFNVFLERLANMKLI  386 (391)
T ss_dssp             EEESS---------------S-CCHHHHHHHTTEECEEGGGGTC--CTTEEEEESCSCHHHHHHHHHHHHSCC--
T ss_pred             ecCCc---------------H-HHHHHHHHHCCEEEccCCCCCC--CCCEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence            77651               1 1245677889999999999974  34599999998888899999999988764

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=100.00  E-value=3.5e-38  Score=321.51  Aligned_cols=322  Identities=17%  Similarity=0.238  Sum_probs=254.8

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      |+.+.+++.+++.+... ....|++..+ .+||+++++++.+.+|..+++++|++|+|+++++..+++.+. ++||+|++
T Consensus        45 ~~~v~~a~~~~~~~~~~-~~~~y~~~~~-~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~~~l~-~~gd~Vl~  121 (369)
T 3cq5_A           45 SEALVADLVATVDKIAT-ELNRYPERDA-VELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAFG-GPGRTALG  121 (369)
T ss_dssp             CHHHHHHHHHHHHHHGG-GTTSCCCTTC-HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC-STTCEEEE
T ss_pred             CHHHHHHHHHHHHhccc-ccccCCCccH-HHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHHHHhc-CCCCEEEE
Confidence            78899998888765211 2457877766 799999999999888877888999999999999999999998 79999999


Q ss_pred             cCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHH
Q 009517          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (533)
Q Consensus       221 ~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~  300 (533)
                      +.|+|+++...++..|.+++.++.+  ++|++|++++++++++.     ++++|++++|+||||.+++.+++++|+   +
T Consensus       122 ~~~~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~~~~l~~l~---~  191 (369)
T 3cq5_A          122 FQPSYSMHPILAKGTHTEFIAVSRG--ADFRIDMDVALEEIRAK-----QPDIVFVTTPNNPTGDVTSLDDVERII---N  191 (369)
T ss_dssp             EESSCTHHHHHHHHTTCEEEEEECC--TTSSCCHHHHHHHHHHH-----CCSEEEEESSCTTTCCCCCHHHHHHHH---H
T ss_pred             cCCChHHHHHHHHHcCCEEEEecCC--cCCCCCHHHHHHHhhcc-----CCCEEEEeCCCCCCCCCCCHHHHHHHH---H
Confidence            9999999999999999999999965  35789999999999864     688999999999999999966555554   5


Q ss_pred             HcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhh
Q 009517          301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA  380 (533)
Q Consensus       301 ~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~  380 (533)
                      .+++++|+||+|.++.++     .+...+...    .+ .+++++.||||++ |++|+|+||+++   ++++++.+....
T Consensus       192 ~~~~~li~De~~~~~~~~-----~~~~~~~~~----~~-~~~i~~~s~sK~~-~~~G~r~G~~~~---~~~~~~~l~~~~  257 (369)
T 3cq5_A          192 VAPGIVIVDEAYAEFSPS-----PSATTLLEK----YP-TKLVVSRTMSKAF-DFAGGRLGYFVA---NPAFIDAVMLVR  257 (369)
T ss_dssp             HCSSEEEEECTTGGGCCS-----CCGGGGTTT----CT-TTEEEEEESSSTT-SCGGGCCEEEEE---CTHHHHHHHTTS
T ss_pred             hCCCEEEEECCchhhcCC-----cchHHHHhh----CC-CCEEEEEechHhc-CCcccceEEEEe---CHHHHHHHHHcC
Confidence            556999999999997653     121122111    12 1479999999999 789999999998   888888887654


Q ss_pred             hccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHH
Q 009517          381 SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKA  460 (533)
Q Consensus       381 ~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~  460 (533)
                      . +++++++.|.++..+|+.           .+++++++++++++++.+.+.|++. |+.+.++. +.|+|++++  .  
T Consensus       258 ~-~~~~~~~~~~a~~~~l~~-----------~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-~~~~~~~~~--~--  319 (369)
T 3cq5_A          258 L-PYHLSALSQAAAIVALRH-----------SADTLGTVEKLSVERVRVAARLEEL-GYAVVPSE-SNFVFFGDF--S--  319 (369)
T ss_dssp             C-TTCSCHHHHHHHHHHHHT-----------HHHHHTHHHHHHHHHHHHHHHHHHH-TCEEECCS-SSEEEEECC--S--
T ss_pred             C-CCCCCHHHHHHHHHHhcC-----------HHHHHHHHHHHHHHHHHHHHHHHhC-CCEECCCC-CeEEEEECC--C--
Confidence            3 467899999998888852           1346677888999999999999886 88887555 456776543  1  


Q ss_pred             HHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHH
Q 009517          461 IKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~  525 (533)
                                +...+... |.++||.+.||   + .  .++|||+++ +++++++++++|+++++
T Consensus       320 ----------~~~~l~~~-l~~~gi~v~~~---~-~--~~~iRis~~-~~~~i~~~~~~l~~~~~  366 (369)
T 3cq5_A          320 ----------DQHAAWQA-FLDRGVLIRDV---G-I--AGHLRTTIG-VPEENDAFLDAAAEIIK  366 (369)
T ss_dssp             ----------SHHHHHHH-HHHTTEECBCC---S-C--TTEEEEECC-CHHHHHHHHHHHHHHHT
T ss_pred             ----------CHHHHHHH-HHHCCEEEEEC---C-C--CCeEEEEeC-CHHHHHHHHHHHHHHHh
Confidence                      13344444 56789999997   2 1  238999998 67889999999988764

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=100.00  E-value=4.4e-39  Score=325.71  Aligned_cols=325  Identities=17%  Similarity=0.223  Sum_probs=254.4

Q ss_pred             eeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHH
Q 009517           99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA  178 (533)
Q Consensus        99 ~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~  178 (533)
                      +|||+.|.+..                      +.       |+++++++.+.+..     ...|++..+ .+||+++|+
T Consensus        17 ~id~~~~~~~~----------------------~~-------~~~v~~a~~~~~~~-----~~~y~~~~~-~~lr~~la~   61 (350)
T 3fkd_A           17 IVNFSTTVWTD----------------------GD-------KDHLEKHLVENLNC-----IRHYPEPDA-GTLRQMLAK   61 (350)
T ss_dssp             CEECSCCSCCC----------------------SC-------CHHHHHHHHHTGGG-----GGSCCCTTC-HHHHHHHHH
T ss_pred             EEEccCCCCCC----------------------CC-------CHHHHHHHHHhHhH-----HhcCCCCcH-HHHHHHHHH
Confidence            99999998764                      22       78899888887743     667988876 899999999


Q ss_pred             HHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEec-CCCCCCCCCHHHH
Q 009517          179 GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYL-DEATGWGLETSEV  257 (533)
Q Consensus       179 ~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~-~~~~~~~ld~~~l  257 (533)
                      +++      +++++|++|+|+++++..+++.+.   ||+|+++.|+|..+...++..|++++.+++ ++.+++  ++   
T Consensus        62 ~~~------~~~~~i~~t~g~~~al~~~~~~l~---gd~Vi~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~--~~---  127 (350)
T 3fkd_A           62 RNS------VDNNAILVTNGPTAAFYQIAQAFR---GSRSLIAIPSFAEYEDACRMYEHEVCFYPSNEDIGEA--DF---  127 (350)
T ss_dssp             HTT------CCGGGEEEESHHHHHHHHHHHHTT---TCEEEEEESCCHHHHHHHHHTTCEEEEEETTSCGGGS--CC---
T ss_pred             HhC------cCHHHEEEcCCHHHHHHHHHHHHC---CCEEEEeCCCcHHHHHHHHHcCCeEEEEecCCccccC--cc---
Confidence            974      678899999999999999999884   899999999999999999999999999999 653433  33   


Q ss_pred             HHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCC
Q 009517          258 KKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE  337 (533)
Q Consensus       258 ~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~  337 (533)
                           +      ++++|++++|+||||.+++.+++++|+++|+++  +||+||+|.++.+.+...  .     ..+   +
T Consensus       128 -----~------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~--~li~Dea~~~~~~~~~~~--~-----~~~---~  184 (350)
T 3fkd_A          128 -----S------NMDFCWLCNPNNPDGRLLQRTEILRLLNDHPDT--TFVLDQSYVSFTTEEVIR--P-----ADI---K  184 (350)
T ss_dssp             -----T------TCSEEEEESSCTTTCCCCCHHHHHHHHHHCTTS--EEEEECTTTTSCSSCCCC--G-----GGG---T
T ss_pred             -----C------CCCEEEEeCCCCCcCCCCCHHHHHHHHHhCCCC--EEEEECchhhhccCcchh--h-----HHh---h
Confidence                 2      789999999999999999999888888888765  999999999988765321  1     111   2


Q ss_pred             CCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHH
Q 009517          338 KDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDG  417 (533)
Q Consensus       338 ~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~  417 (533)
                      ...+++++.||||.+ |++|+|+||+++   ++++++.+..... .+++++++|.++..+|+...       .+.   ++
T Consensus       185 ~~~~~i~~~S~sK~~-~~~G~r~G~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~-------~~~---~~  249 (350)
T 3fkd_A          185 GRKNLVMVYSFSHAY-GIPGLRIGYIVA---NKDFMKRVAAFST-PWAVNALAIEAAKFILIHPA-------QFT---LP  249 (350)
T ss_dssp             TCSSEEEEEESHHHH-SCGGGCCEEEEC---CHHHHHHHHTTCC-TTCSCHHHHHHHHHHHHCTT-------TTC---CC
T ss_pred             cCCCEEEEecCchhc-cCcchheEeEEe---CHHHHHHHHHhCC-CCCCCHHHHHHHHHHHhCHH-------HHH---HH
Confidence            234679999999999 889999999998   9999998877653 46889999999999887542       111   22


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCC
Q 009517          418 ILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVP  497 (533)
Q Consensus       418 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~  497 (533)
                      +++.+ ++++.+.+.|+++||+.+.++.++ |+|+.++..             +...++..+++++||.+.||..|+ ..
T Consensus       250 ~~~~~-~~~~~l~~~L~~~~~~~~~~~~~~-~~~~~~~~~-------------~~~~l~~~L~~~~gi~v~~g~~f~-~~  313 (350)
T 3fkd_A          250 IRKWQ-RNTVDFITALNRLDGVEVHPSGTT-FFLLRLKKG-------------TAAELKKYMLEEYNMLIRDASNFR-GL  313 (350)
T ss_dssp             HHHHH-HHHHHHHHHHHHSTTEEECCCSSS-EEEEEESSS-------------CHHHHHHHHHHTTCEECEECTTST-TC
T ss_pred             HHHHH-HHHHHHHHHHhcCCCcEECCCCCc-EEEEECCCC-------------CHHHHHHHHHHHCCEEEEeCccCC-CC
Confidence            22233 778889999988889988766654 566555421             244555566655999999999997 34


Q ss_pred             CCceEEEEecCCcCcHHHHHHHHHHHHHHH
Q 009517          498 GTWHFRCTILPQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       498 g~~~iRis~~~~~e~i~~~~~~l~~~l~~~  527 (533)
                      +.++|||+++ +++++++++++|++++++.
T Consensus       314 ~~~~iRis~~-~~~~~~~l~~al~~~~~~~  342 (350)
T 3fkd_A          314 DESYVRITTQ-RPAQNQLFIKALETFLEKY  342 (350)
T ss_dssp             CTTEEEEECC-CHHHHHHHHHHHHHHHTC-
T ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHHHHHHh
Confidence            4569999998 4566788888888777654

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=100.00  E-value=3.7e-38  Score=316.95  Aligned_cols=305  Identities=18%  Similarity=0.251  Sum_probs=241.1

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      |+.+.+++.+.+..     ...|+ ..|..+||++++++++      +++++|++|+|+++++..+++.+   +||+|++
T Consensus        31 ~~~v~~a~~~~~~~-----~~~y~-~~~~~~lr~~la~~~~------~~~~~i~~t~G~~~~l~~~~~~~---~gd~vl~   95 (337)
T 3p1t_A           31 EPRVQAAIAAAAAR-----INRYP-FDAEPRVMRKLAEHFS------CPEDNLMLVRGIDECFDRISAEF---SSMRFVT   95 (337)
T ss_dssp             CHHHHHHHHHHGGG-----TTSCC-TTHHHHHHHHHHHHHT------SCGGGEEEESHHHHHHHHHHHHS---TTSEEEE
T ss_pred             CHHHHHHHHHhhhh-----hccCC-CCchHHHHHHHHHHhC------cCHHHEEEeCCHHHHHHHHHHhc---CCCeEEE
Confidence            78888888887765     45685 5689999999999985      67889999999999999999986   7999999


Q ss_pred             cCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHH
Q 009517          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (533)
Q Consensus       221 ~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~  300 (533)
                      +.|+|.++...++..|++++.+++++  +|++|+++++++  .      ++++|++++||||||.+++.++   |.++|+
T Consensus        96 ~~p~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~--~------~~~~v~i~~p~nptG~~~~~~~---l~~l~~  162 (337)
T 3p1t_A           96 AWPGFDGYRARIAVSGLRHFEIGLTD--DLLLDPNDLAQV--S------RDDCVVLANPSNPTGQALSAGE---LDQLRQ  162 (337)
T ss_dssp             ESSSCSHHHHHHTTSCCEEEEECBCT--TSSBCHHHHTTC--C------TTEEEEEESSCTTTCCCCCHHH---HHHHHH
T ss_pred             eCCCcHHHHHHHHHcCCEEEEecCCC--CCCCCHHHHHhh--c------CCCEEEEeCCCCCCCCCCCHHH---HHHHHH
Confidence            99999999999999999999999874  578999999875  2      6789999999999999999555   555667


Q ss_pred             HcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhh
Q 009517          301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA  380 (533)
Q Consensus       301 ~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~  380 (533)
                      ++++ +|+||+|.+|.+.+. .  .     .     ....+++++.||||++ |++|+|+||+++   ++++++.+.+..
T Consensus       163 ~~~~-~ivDea~~~~~~~~~-~--~-----~-----~~~~~~i~~~S~sK~~-g~~G~r~G~~~~---~~~~~~~l~~~~  224 (337)
T 3p1t_A          163 RAGK-LLIDETYVDYSSFRA-R--G-----L-----AYGENELVFRSFSKSY-GLAGLRLGALFG---PSELIAAMKRKQ  224 (337)
T ss_dssp             HCSE-EEEECTTGGGSSCSS-S--C-----C-----CCBTTEEEEEESSSTT-CCTTTCCEEEEC---CHHHHHHHHTTS
T ss_pred             hCCc-EEEECCChhhccccc-c--c-----c-----ccCCCEEEEeeCchhc-cCcchheEEEEe---CHHHHHHHHhhc
Confidence            7786 566999998665332 1  1     0     1223578899999999 899999999998   999998887654


Q ss_pred             hccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHH
Q 009517          381 SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKA  460 (533)
Q Consensus       381 ~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~  460 (533)
                       ..++++.++|.++..+|+..           +..++.++++.++++.+.+.|+++ |+.+.+++++|+.|. ..  .  
T Consensus       225 -~~~~~~~~~~~a~~~~l~~~-----------~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~-~~--~--  286 (337)
T 3p1t_A          225 -WFCNVGTLDLHALEAALDND-----------RAREAHIAKTLAQRRRVADALRGL-GYRVASSEANFVLVE-NA--A--  286 (337)
T ss_dssp             -CTTCSCHHHHHHHHHHHTCH-----------HHHHHHHHHHHHHHHHHHHHHHHT-TCCBCCCSSSEEEEE-CT--T--
T ss_pred             -CCCCCCHHHHHHHHHHhCCH-----------HHHHHHHHHHHHHHHHHHHHHHHC-cCEECCCCCeEEEEE-cC--C--
Confidence             44778899999998888631           123344555667788899999998 888888888766553 22  1  


Q ss_pred             HHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHH
Q 009517          461 IKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~  525 (533)
                                 ... +.++|.++||.+.||..|+. ++  +||||++ +++++++++++|+++++
T Consensus       287 -----------~~~-~~~~l~~~gi~v~~g~~~~~-~~--~iRis~~-~~~~~~~l~~al~~~~~  335 (337)
T 3p1t_A          287 -----------GER-TLRFLRERGIQVKDAGQFGL-HH--HIRISIG-REEDNDRLLAALAEYSD  335 (337)
T ss_dssp             -----------THH-HHHHHHHTTEECEEGGGGTC-CS--EEEEECC-CHHHHHHHHHHHHHHTC
T ss_pred             -----------HHH-HHHHHHHCCeEEEECccCCC-CC--eEEEecC-CHHHHHHHHHHHHHHhh
Confidence                       122 34667789999999999974 33  9999998 56778888888877643

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=100.00  E-value=1.6e-40  Score=345.01  Aligned_cols=335  Identities=15%  Similarity=0.135  Sum_probs=257.8

Q ss_pred             ceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCc-c---cHHHH
Q 009517           98 EILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQ-G---IKGLR  173 (533)
Q Consensus        98 ~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~-G---~~~lr  173 (533)
                      .+|+|+.|+|++                      ..       |+.+.+++.+.+..... ....|++.. |   ..+||
T Consensus        57 ~~i~l~~g~~~~----------------------~~-------~~~v~~a~~~~l~~~~~-~~~~Y~~~~~G~~~~~~lr  106 (427)
T 2hox_A           57 CSADVASGDGLF----------------------LE-------EYWKQHKEASAVLVSPW-HRMSYFFNPVSNFISFELE  106 (427)
T ss_dssp             CCEECCSCCCGG----------------------GH-------HHHTTSHHHHCEEECTT-TTCSSSCSSCCTTCCHHHH
T ss_pred             ceEEecCcCCCC----------------------CC-------CHHHHHhHHhhhhcCCc-ccccCCCCCCCccchHHHH
Confidence            489999999874                      21       35556666666532211 233499988 9   99999


Q ss_pred             HHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHh--------ccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecC
Q 009517          174 DTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL--------IRSENDGILCPIPQYPLYSASIALHGGTLVPYYLD  245 (533)
Q Consensus       174 ~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l--------~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~  245 (533)
                      +++|++++++++..+++++|++|+|+++++..++.++        + ++||+|+++.|+|..|...++..|++++.+   
T Consensus       107 ~aia~~~~~~~~~~~~~~~iv~t~G~~~al~~~~~~l~~~~~~~~~-~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~---  182 (427)
T 2hox_A          107 KTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPD-APESKVVAHAPFYPVFREQTKYFDKKGYVW---  182 (427)
T ss_dssp             HHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTT-SCCEEEEECSSCCHHHHHHHHHSCBTTEEE---
T ss_pred             HHHHHHHHHhCCcCCCCCEEEEeCCHHHHHHHHHHHHhhccccccC-CCCCEEEEeCCCcccHHHHHHHcCCeeeee---
Confidence            9999999987777788999999999999999999999        7 899999999999999999999999887643   


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCccc
Q 009517          246 EATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHS  325 (533)
Q Consensus       246 ~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~  325 (533)
                           .+|++.|++++++      ++++|++++||||||.+++ +.+       +  ++..|.|++|    |++   ..+
T Consensus       183 -----~~d~~~l~~~~~~------~~k~v~l~~p~NPtG~~~~-~~l-------~--~~~~i~d~~~----~~~---~~s  234 (427)
T 2hox_A          183 -----AGNAANYVNVSNP------EQYIEMVTSPNNPEGLLRH-AVI-------K--GCKSIYDMVY----YWP---HYT  234 (427)
T ss_dssp             -----EEEGGGGTTCSCG------GGEEEEEESSCTTTCCCCC-CSS-------T--TCEEEEECTT----CST---TTS
T ss_pred             -----cCCHHHHHHhhcC------CceEEEEcCCCCCcccccH-HHH-------c--CCCEEEeecc----cCC---CCC
Confidence                 5577888877765      6899999999999999999 422       2  4556666665    322   222


Q ss_pred             HHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCC
Q 009517          326 FKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVG  404 (533)
Q Consensus       326 ~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~  404 (533)
                      +..+       . ..++|++.||||.+ |++|+|+||+++  .++++++.+.+... ..++++.+.|.++..+|++..  
T Consensus       235 ~~~~-------~-~~~~i~~~S~SK~~-g~~G~RiG~~~~--~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~--  301 (427)
T 2hox_A          235 PIKY-------K-ADEDILLFTMSKFT-GHSGSRFGWALI--KDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVV--  301 (427)
T ss_dssp             CCCS-------C-BCCSEEEEEHHHHT-SCGGGCCEEEEE--CCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHH--
T ss_pred             cccc-------C-CCceEEEEeChhcC-CCCCceEEEEEE--CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcch--
Confidence            2111       1 23569999999998 899999999998  24899999988776 557889999999988885310  


Q ss_pred             ChhHH-----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCceE--------------ecCCceeEEecccCCCHHHHHHHH
Q 009517          405 DESYE-----SYCAERDGILSSLARRAKTLEDAFNSLEGITC--------------NKAEGAMYLFPRIQLPEKAIKAAE  465 (533)
Q Consensus       405 ~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~--------------~~~~gg~~~~~~~~~~~~~~~~~~  465 (533)
                        .+-     .+.++++.+++.++++++++.+.|++++|+.+              ..|++++|+|++++.         
T Consensus       302 --~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~---------  370 (427)
T 2hox_A          302 --AMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW---------  370 (427)
T ss_dssp             --HHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECS---------
T ss_pred             --hhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhCcCccccccccccccccccccCCCCceEEEEECCC---------
Confidence              000     01234567788899999999999998766543              457789999987652         


Q ss_pred             hcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHH
Q 009517          466 AEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       466 ~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~  525 (533)
                           +...++..+++++||.++||..|+.  +.++||||++.++++|++++++|+++++
T Consensus       371 -----~~~~~~~~ll~~~gI~v~pg~~f~~--~~~~~Ris~~~~~e~l~~~l~~l~~~~~  423 (427)
T 2hox_A          371 -----EEDKDCYQTFQNGRINTQNGVGFEA--SSRYVRLSLIKTQDDFDQLMYYLKDMVK  423 (427)
T ss_dssp             -----GGGCSHHHHHHHTTEECEEGGGGTS--CTTEEEEECSSCHHHHHHHHHHHHHHHT
T ss_pred             -----cHHHHHHHHHHHCCEEEcCCCccCC--CCCEEEEEecCCHHHHHHHHHHHHHHHh
Confidence                 1233456777789999999999984  4569999999888899999999998874

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=100.00  E-value=1.3e-37  Score=316.20  Aligned_cols=331  Identities=16%  Similarity=0.210  Sum_probs=256.1

Q ss_pred             eeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHH
Q 009517           99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA  178 (533)
Q Consensus        99 ~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~  178 (533)
                      +|+|+.|.|.+                      +.       |+.+++++.+++.+... ....|++. +..+||+++++
T Consensus        28 ~i~l~~~~~~~----------------------~~-------~~~v~~a~~~~~~~~~~-~~~~y~~~-~~~~lr~~la~   76 (360)
T 3hdo_A           28 WIKLNTNENPY----------------------PP-------SPEVVKAILEELGPDGA-ALRIYPSA-SSQKLREVAGE   76 (360)
T ss_dssp             SEECSSCCCSS----------------------CC-------CHHHHHHHHHHHTTTCG-GGGSCCCS-SCHHHHHHHHH
T ss_pred             eeeccCCCCCC----------------------CC-------CHHHHHHHHHHHhcccc-hhhcCCCC-chHHHHHHHHH
Confidence            99999999864                      22       78999999888875211 14567655 57999999999


Q ss_pred             HHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHH
Q 009517          179 GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVK  258 (533)
Q Consensus       179 ~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~  258 (533)
                      +++      +++++|++|+|+++++..+++.++ ++||+|+++.|+|.++...++..|++++.+++++  ++.+  ++++
T Consensus        77 ~~g------~~~~~i~~t~g~~~al~~~~~~l~-~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~--~~~~--~~l~  145 (360)
T 3hdo_A           77 LYG------FDPSWIIMANGSDEVLNNLIRAFA-AEGEEIGYVHPSYSYYGTLAEVQGARVRTFGLTG--DFRI--AGFP  145 (360)
T ss_dssp             HHT------CCGGGEEEESSHHHHHHHHHHHHC-CTTCEEEEESSSCTHHHHHHHHHTCEEEEECBCT--TSSB--TTCC
T ss_pred             HhC------cCcceEEEcCCHHHHHHHHHHHHh-CCCCEEEEcCCChHHHHHHHHHCCCEEEEeeCCC--CCCH--HHHH
Confidence            985      678899999999999999999998 8999999999999999999999999999999865  3444  4443


Q ss_pred             HHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCC
Q 009517          259 KQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEK  338 (533)
Q Consensus       259 ~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (533)
                      +.+        +++++++++|+||||.+++.   ++|.++|+++|+++|+||+|.+|.  +. ...+   +...      
T Consensus       146 ~~~--------~~~~v~i~~p~nptG~~~~~---~~l~~l~~~~~~~li~De~~~~~~--~~-~~~~---~~~~------  202 (360)
T 3hdo_A          146 ERY--------EGKVFFLTTPNAPLGPSFPL---EYIDELARRCAGMLVLDETYAEFA--ES-NALE---LVRR------  202 (360)
T ss_dssp             SSB--------CSSEEEEESSCTTTCCCCCH---HHHHHHHHHBSSEEEEECTTGGGS--SC-CCTH---HHHH------
T ss_pred             hhc--------CCCEEEEeCCCCCCCCCcCH---HHHHHHHHHCCCEEEEECChHhhC--Cc-chhH---Hhcc------
Confidence            322        46799999999999999995   556667889999999999999853  32 2222   2111      


Q ss_pred             CceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHH
Q 009517          339 DISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGI  418 (533)
Q Consensus       339 ~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~  418 (533)
                      ..+++++.||||.+ |++|+|+||+++   ++++++.+..... .+++++++|.++..+|+.           .++++++
T Consensus       203 ~~~~i~~~s~sK~~-g~~G~r~G~~~~---~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~-----------~~~~~~~  266 (360)
T 3hdo_A          203 HENVVVTRTLSKSY-SLAGMRIGLAIA---RPEVIAALDKIRD-HYNLDRLAQAACVAALRD-----------QAYLSEC  266 (360)
T ss_dssp             CSSEEEEEESTTTT-SCTTSCCEEEEC---CHHHHHHHHHHSC-SCCSCHHHHHHHHHHHHC-----------HHHHHHH
T ss_pred             CCCEEEEecchHhh-cCCccceeeEee---CHHHHHHHHHhCC-CCCCCHHHHHHHHHHhcC-----------HHHHHHH
Confidence            23578999999999 889999999998   9999999887654 478899999999988853           2346778


Q ss_pred             HHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCC
Q 009517          419 LSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPG  498 (533)
Q Consensus       419 ~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g  498 (533)
                      +++++++++.+.+.|+++ |+.+.++.+. |+|+.++  .          . +...+. +.|.++||.+.||..++   +
T Consensus       267 ~~~~~~~~~~l~~~L~~~-~~~~~~~~~~-~~~~~~~--~----------~-~~~~l~-~~l~~~gi~v~~~~~~~---~  327 (360)
T 3hdo_A          267 CRRIRETREWFTTELRSI-GYDVIPSQGN-YLFATPP--D----------R-DGKRVY-DGLYARKVLVRHFSDPL---L  327 (360)
T ss_dssp             HHHHHHHHHHHHHHHHHT-TCEECCCSSS-EEEEECT--T----------C-CHHHHH-HHHHHTTEECBCCCSTT---T
T ss_pred             HHHHHHHHHHHHHHHHHC-CCEEcCCCcc-EEEEECC--C----------C-CHHHHH-HHHHHCCEEEEECCCCC---C
Confidence            888999999999999998 8888766655 5665443  1          1 233444 45667899999977632   2


Q ss_pred             CceEEEEecCCcCcHHHHHHHHHHHHHHHHHH
Q 009517          499 TWHFRCTILPQEDKIPAIVTRLTDFHKNFMDK  530 (533)
Q Consensus       499 ~~~iRis~~~~~e~i~~~~~~l~~~l~~~~~~  530 (533)
                      .++|||+++ +++++++++++|+++.+..-++
T Consensus       328 ~~~iRis~~-~~~e~~~l~~al~~~~~~~~~~  358 (360)
T 3hdo_A          328 AHGMRISIG-TREEMEQTLAALKEIGEGHHHH  358 (360)
T ss_dssp             TTSEEEECC-CHHHHHHHHHHHHHHHC-----
T ss_pred             CCEEEEEcC-CHHHHHHHHHHHHHHhcccccc
Confidence            349999998 6788999999998877665544

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=100.00  E-value=1.1e-35  Score=306.13  Aligned_cols=329  Identities=12%  Similarity=0.092  Sum_probs=253.3

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      |+.+.+++.+.+..... ....|.+..|..++++++++++.+.+|.    +++++|+|+++|+..+++.++ ++||+|++
T Consensus        59 ~~~v~~a~~~~~~~~~~-~~~~~~~~~g~~~~~~~l~~~la~~~g~----~~v~~~~ggt~a~~~~~~~~~-~~gd~V~~  132 (398)
T 3a2b_A           59 DTRIIKAAQDALEKYGT-GCAGSRFLNGTLDIHVELEEKLSAYVGK----EAAILFSTGFQSNLGPLSCLM-GRNDYILL  132 (398)
T ss_dssp             CHHHHHHHHHHHHHHCS-CCCSBTTTTCCCHHHHHHHHHHHHHHTC----SEEEEESSHHHHHHHHHHHSS-CTTCEEEE
T ss_pred             CHHHHHHHHHHHHHcCC-CCCCcCcccCCcHHHHHHHHHHHHHhCC----CcEEEECCHHHHHHHHHHHHh-CCCCEEEE
Confidence            68899998888865322 2345777788889999999999888773    589999999999999999998 89999999


Q ss_pred             cCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHH
Q 009517          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (533)
Q Consensus       221 ~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~  300 (533)
                      +.|+|..+...++..|++++.++.       +|++++++.+++...  .++++|++++|+||||.+++   +++|+++|+
T Consensus       133 ~~p~~~~~~~~~~~~g~~~~~v~~-------~d~~~l~~~l~~~~~--~~~~~v~~~~~~nptG~~~~---~~~l~~~~~  200 (398)
T 3a2b_A          133 DERDHASIIDGSRLSFSKVIKYGH-------NNMEDLRAKLSRLPE--DSAKLICTDGIFSMEGDIVN---LPELTSIAN  200 (398)
T ss_dssp             ETTCCHHHHHHHHHSSSEEEEECT-------TCHHHHHHHHHTSCS--SSCEEEEEESBCTTTCCBCC---HHHHHHHHH
T ss_pred             CCccCHHHHHHHHHcCCceEEeCC-------CCHHHHHHHHHhhcc--CCceEEEEeCCCCCCCCccC---HHHHHHHHH
Confidence            999999999999999999999885       489999999875210  15889999999999999998   899999999


Q ss_pred             HcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHh-
Q 009517          301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV-  379 (533)
Q Consensus       301 ~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~-  379 (533)
                      +||+++|+||+|..+.|+..  ..++.... ++    .+..++++.||||.+ |++|   ||+++   ++++++.+... 
T Consensus       201 ~~~~~li~De~~~~~~~~~~--~~~~~~~~-~~----~~~~di~~~s~sK~~-~~~G---G~~~~---~~~~~~~l~~~~  266 (398)
T 3a2b_A          201 EFDAAVMVDDAHSLGVIGHK--GAGTASHF-GL----NDDVDLIMGTFSKSL-ASLG---GFVAG---DADVIDFLKHNA  266 (398)
T ss_dssp             HHTCEEEEECTTTTTTSSGG--GCCHHHHH-TC----GGGCSEEEEESSSTT-CSSC---EEEEE---CHHHHHHHHHHC
T ss_pred             HcCcEEEEECCCcccccCCC--CCchHhhc-CC----CcCCeEEEecccccc-cCCC---cEEEe---CHHHHHHHHHhc
Confidence            99999999999998776321  12322221 11    111138899999999 7778   99998   89999988775 


Q ss_pred             hh-ccccCChHHHH-HHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCC
Q 009517          380 AS-VNLCSNISGQI-LASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLP  457 (533)
Q Consensus       380 ~~-~~~~~~~~~q~-a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~  457 (533)
                      .. ...+++...|. ++..+|+           ..++.++++++++++++++.+.|+++ |+.+..+.| +++|+.++  
T Consensus       267 ~~~~~~~~~~~~~~a~~~~~l~-----------~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~g-~~~~~~~~--  331 (398)
T 3a2b_A          267 RSVMFSASMTPASVASTLKALE-----------IIQNEPEHIEKLWKNTDYAKAQLLDH-GFDLGATES-PILPIFIR--  331 (398)
T ss_dssp             HHHHSSBCCCHHHHHHHHHHHH-----------HHHHCTHHHHHHHHHHHHHHHHHHHT-TCCBCSCCS-SEEEEECC--
T ss_pred             ccceecCCCCHHHHHHHHHHHH-----------HHhhCHHHHHHHHHHHHHHHHHHHhc-CCCcCCCCC-CEEEEEcC--
Confidence            22 33344445554 4556663           12345678888999999999999998 888877775 67776553  


Q ss_pred             HHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 009517          458 EKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~~  527 (533)
                      .+.          +...++..++ ++||.+.||..|+...+.+++||+++  .+++++++++++|+++++++
T Consensus       332 ~~~----------~~~~l~~~l~-~~gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~~  392 (398)
T 3a2b_A          332 SNE----------KTFWVTKMLQ-DDGVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVFKQA  392 (398)
T ss_dssp             CHH----------HHHHHHHHHH-HTTEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             CHH----------HHHHHHHHHH-HCCcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence            211          1334455555 45999999998864334569999997  59999999999999998764

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=100.00  E-value=1.8e-36  Score=304.75  Aligned_cols=301  Identities=18%  Similarity=0.262  Sum_probs=236.3

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      |+.+++++.+++...   ....|++. +..++|+++++++++.   .+++++|++|+|+++++..+++.+    ||+|++
T Consensus        34 ~~~v~~a~~~~~~~~---~~~~y~~~-~~~~lr~~la~~~~~~---~~~~~~v~~~~G~~~al~~~~~~~----gd~Vl~  102 (335)
T 1uu1_A           34 PEDLVDEVFRRLNSD---ALRIYYDS-PDEELIEKILSYLDTD---FLSKNNVSVGNGADEIIYVMMLMF----DRSVFF  102 (335)
T ss_dssp             CHHHHHHHHHTCCGG---GGGSCCCS-SCHHHHHHHHHHHTCS---SCCGGGEEEESSHHHHHHHHHHHS----SEEEEC
T ss_pred             CHHHHHHHHHHhhhh---hhhcCCCC-chHHHHHHHHHHcCCC---CCCHHHEEEcCChHHHHHHHHHHh----CCcEEE
Confidence            788999888877321   25668654 6999999999999743   356789999999999999999987    789999


Q ss_pred             cCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHH
Q 009517          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (533)
Q Consensus       221 ~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~  300 (533)
                      + |+|+++...++..|.+++.+++++  +|++|++++     +      ++++|++++||||||.+++.+++++|+++| 
T Consensus       103 ~-p~y~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l-----~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~-  167 (335)
T 1uu1_A          103 P-PTYSCYRIFAKAVGAKFLEVPLTK--DLRIPEVNV-----G------EGDVVFIPNPNNPTGHVFEREEIERILKTG-  167 (335)
T ss_dssp             S-SSCHHHHHHHHHHTCEEEECCCCT--TSCCCCCCC-----C------TTEEEEEESSCTTTCCCCCHHHHHHHHHTT-
T ss_pred             C-CCcHHHHHHHHHcCCeEEEeccCC--CCCCCHHHc-----C------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhC-
Confidence            9 999999999999999999998863  578888877     2      689999999999999999988888888877 


Q ss_pred             HcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhh
Q 009517          301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA  380 (533)
Q Consensus       301 ~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~  380 (533)
                        | ++|+||+|.++.+.   +..+   +..      ...+++++.||||.+ |++|+|+||+++   ++++++.+....
T Consensus       168 --~-~li~De~~~~~~~~---~~~~---~~~------~~~~~i~~~s~sK~~-g~~G~r~G~~~~---~~~~~~~l~~~~  228 (335)
T 1uu1_A          168 --A-FVALDEAYYEFHGE---SYVD---FLK------KYENLAVIRTFSKAF-SLAAQRVGYVVA---SEKFIDAYNRVR  228 (335)
T ss_dssp             --C-EEEEECTTHHHHCC---CCGG---GGG------TCSSEEEEEESTTTT-TCGGGCCEEEEE---CHHHHHHHHHHS
T ss_pred             --C-EEEEECcchhhcch---hHHH---Hhh------hCCCEEEEecchhhc-CCcccCeEEEEe---CHHHHHHHHHhc
Confidence              7 89999999986532   1111   111      223578999999998 889999999998   999999887765


Q ss_pred             hccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHH
Q 009517          381 SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKA  460 (533)
Q Consensus       381 ~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~  460 (533)
                      . .+++++++|.++.++|+.           .+++++++++++++++++.+.|+++ |+.+. +.+++|+|++++  .. 
T Consensus       229 ~-~~~~~~~~~~~~~~~l~~-----------~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~--~~-  291 (335)
T 1uu1_A          229 L-PFNVSYVSQMFAKVALDH-----------REIFEERTKFIVEERERMKSALREM-GYRIT-DSRGNFVFVFME--KE-  291 (335)
T ss_dssp             C-TTCSCHHHHHHHHHHHHT-----------HHHHHHHHHHHHHHHHHHHHHHHHH-TCCBC-CCCSSEEEEECC--TH-
T ss_pred             C-CCCcCHHHHHHHHHHhCC-----------HHHHHHHHHHHHHHHHHHHHHHHHC-CcEEc-CCCCeEEEEECC--CC-
Confidence            3 468899999999988852           1345677888899999999999987 77765 455678886554  20 


Q ss_pred             HHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHH
Q 009517          461 IKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDF  523 (533)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~  523 (533)
                                +...++.. |.++||.+.|+      .  +++||+++. ++++++++++|+++
T Consensus       292 ----------~~~~~~~~-l~~~gi~v~~~------~--~~iRis~~~-~~~i~~~~~~l~~~  334 (335)
T 1uu1_A          292 ----------EKERLLEH-LRTKNVAVRSF------R--EGVRITIGK-REENDMILRELEVF  334 (335)
T ss_dssp             ----------HHHHHHHH-HHHHTEEEEEE------T--TEEEEECCC-HHHHHHHHHHHHCC
T ss_pred             ----------CHHHHHHH-HHHCCEEEEEC------C--CeEEEEeCC-HHHHHHHHHHHHhh
Confidence                      12344444 44689999981      2  389999975 45688888888754

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=100.00  E-value=1.8e-33  Score=287.92  Aligned_cols=325  Identities=12%  Similarity=0.092  Sum_probs=248.0

Q ss_pred             CCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCe
Q 009517          138 GLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDG  217 (533)
Q Consensus       138 ~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~  217 (533)
                      ..+|+.+++++.+.+.       ..|++.  ..++++++++++.+.+|.+ ++++|++|+|+++|+..+++.++ ++||+
T Consensus        29 ~~~~~~v~~a~~~~~~-------~~~~~~--~~~~~~~~~~~la~~~g~~-~~~~v~~~~g~t~a~~~~~~~l~-~~gd~   97 (386)
T 2dr1_A           29 VACFPEVLEIMKVQMF-------SHRSKE--YRKVHMDTVERLREFLEVE-KGEVLLVPSSGTGIMEASIRNGV-SKGGK   97 (386)
T ss_dssp             CCCCHHHHHHTTSCCC-------CTTSHH--HHHHHHHHHHHHHHHHTCS-SSEEEEESSCHHHHHHHHHHHHS-CTTCE
T ss_pred             cCCcHHHHHHHhcccc-------cccCHH--HHHHHHHHHHHHHHHhCCC-CCcEEEEeCChHHHHHHHHHHhh-cCCCe
Confidence            3346777766544332       245432  4788888999888888865 46789999999999999999998 79999


Q ss_pred             EEEcCCcCcc--hHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHH
Q 009517          218 ILCPIPQYPL--YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAI  295 (533)
Q Consensus       218 Vlv~~p~~~~--~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i  295 (533)
                      |++++|+|++  +...+...|++++.++.+.  ++.+|+++|++++++    .+++++|++++|+||||.+.+   +++|
T Consensus        98 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~----~~~~~~v~~~~~~nptG~~~~---l~~i  168 (386)
T 2dr1_A           98 VLVTIIGAFGKRYKEVVESNGRKAVVLEYEP--GKAVKPEDLDDALRK----NPDVEAVTITYNETSTGVLNP---LPEL  168 (386)
T ss_dssp             EEEEESSHHHHHHHHHHHHTTCEEEEEECCT--TCCCCHHHHHHHHHH----CTTCCEEEEESEETTTTEECC---HHHH
T ss_pred             EEEEcCCchhHHHHHHHHHhCCceEEEecCC--CCCCCHHHHHHHHhc----CCCCcEEEEEeecCCcchhCC---HHHH
Confidence            9999999998  8888899999999999875  567999999999964    227899999999999999988   8999


Q ss_pred             HHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHH
Q 009517          296 VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQ  375 (533)
Q Consensus       296 ~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~  375 (533)
                      +++|++||+++|+||+|..+.+.     .++    ..+   .   .++++.|+||++ +.+ .++||+++   ++++++.
T Consensus       169 ~~l~~~~~~~li~D~a~~~~~~~-----~~~----~~~---~---~di~~~s~sK~~-~~~-~g~G~~~~---~~~~~~~  228 (386)
T 2dr1_A          169 AKVAKEHDKLVFVDAVSAMGGAD-----IKF----DKW---G---LDVVFSSSQKAF-GVP-PGLAIGAF---SERFLEI  228 (386)
T ss_dssp             HHHHHHTTCEEEEECTTTBTTBC-----CCT----TTT---T---CSEEEEETTSTT-CCC-SSCEEEEE---CHHHHHH
T ss_pred             HHHHHHcCCeEEEEccccccCcc-----ccc----ccc---C---CcEEEEeccccc-cCC-CceEEEEE---CHHHHHH
Confidence            99999999999999999875431     111    111   1   248899999998 444 24899998   8888877


Q ss_pred             HH----------------Hhh---hccccCChHHHHHHHHHcCCCCCCChhHHHHHHH--HHHHHHHHHHHHHHHHHHHh
Q 009517          376 IY----------------KVA---SVNLCSNISGQILASLVMSPPKVGDESYESYCAE--RDGILSSLARRAKTLEDAFN  434 (533)
Q Consensus       376 l~----------------~~~---~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~  434 (533)
                      +.                ...   ..+++++.+.+.++..+|+          .+.++  +++++++++++++++.+.|+
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~----------~~~~~g~~~~~~~~~~~~~~~l~~~L~  298 (386)
T 2dr1_A          229 AEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALR----------IIEKMGGKEKWLEMYEKRAKMVREGVR  298 (386)
T ss_dssp             HTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHH----------HHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHH----------HHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            62                221   2446778888888887774          12222  56788889999999999999


Q ss_pred             cCCCceEecCCc---eeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CC
Q 009517          435 SLEGITCNKAEG---AMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQ  509 (533)
Q Consensus       435 ~~~g~~~~~~~g---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~  509 (533)
                      ++ |+.+..+.+   +.++|+.++  .+         . +...++..++ ++||.+.||..|.   +.+++||++.  .+
T Consensus       299 ~~-g~~~~~~~~~~~~~~~~~~~~--~~---------~-~~~~~~~~l~-~~gi~v~~~~~~~---~~~~iRi~~~~~~~  361 (386)
T 2dr1_A          299 EI-GLDILAEPGHESPTITAVLTP--PG---------I-KGDEVYEAMR-KRGFELAKGYGSV---KEKTFRIGHMGYMK  361 (386)
T ss_dssp             HT-TCCBSSCTTCBCSSEEEEECC--TT---------C-CHHHHHHHHH-HTTEECEECCGGG---TTTEEEEECCSSCC
T ss_pred             Hc-CCeeCcCccccCCceEEEEcC--CC---------C-CHHHHHHHHH-HCCeEEecCcccc---CCCEEEEECCCCCC
Confidence            98 888877753   556675543  11         1 2344555555 4599999998664   2239999997  79


Q ss_pred             cCcHHHHHHHHHHHHHHHHH
Q 009517          510 EDKIPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       510 ~e~i~~~~~~l~~~l~~~~~  529 (533)
                      ++++++++++|+++++++..
T Consensus       362 ~~~i~~~~~~l~~~~~~~~~  381 (386)
T 2dr1_A          362 FEDIQEMLDNLREVINELKK  381 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCC
Confidence            99999999999999987754

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=100.00  E-value=4e-33  Score=286.77  Aligned_cols=329  Identities=14%  Similarity=0.118  Sum_probs=243.6

Q ss_pred             CHHHHHHHHHHHhcCCC---CCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCe
Q 009517          141 SADSIERAWQILDQIPG---RATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDG  217 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~---~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~  217 (533)
                      ++.+.+++.+.+.+...   .....|+...+..+|+++++++++      . ++.|++++ |++++..+++.++ ++||.
T Consensus        59 ~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~------~-~~~i~~~s-Gt~a~~~~l~~~~-~~gd~  129 (399)
T 3tqx_A           59 HPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFLG------T-DDTILYSS-CFDANGGLFETLL-GPEDA  129 (399)
T ss_dssp             CHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHHT------C-SEEEEESC-HHHHHHTTHHHHC-CTTCE
T ss_pred             CHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHHC------C-CcEEEECc-hHHHHHHHHHHhc-CCCCE
Confidence            68888888888765321   011223345557889999998874      2 24555555 5789999999998 89999


Q ss_pred             EEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHH
Q 009517          218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD  297 (533)
Q Consensus       218 Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~  297 (533)
                      |+++.|+|..+...++..|.+++.++.       +|++++++.+++....+.++++|++++|+||||.+++   +++|++
T Consensus       130 v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~  199 (399)
T 3tqx_A          130 IISDELNHASIIDGIRLCKAQRYRYKN-------NAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIAD---LKSICD  199 (399)
T ss_dssp             EEEETTCCHHHHHHHHSCCSEEEEECT-------TCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECC---HHHHHH
T ss_pred             EEECCcccHHHHHHHHHcCCceeEeCC-------CCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCC---HHHHHH
Confidence            999999999999999999999999885       3678999999876544457999999999999999999   999999


Q ss_pred             HHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHH
Q 009517          298 FCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY  377 (533)
Q Consensus       298 l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~  377 (533)
                      +|++||+++|+||+|....+...  ..+.... .++    .....+++.||||++ +  |.+.||+++   ++++++.+.
T Consensus       200 l~~~~~~~li~De~~~~~~~~~~--~~~~~~~-~~~----~~~~di~~~s~sK~~-~--g~~gG~~~~---~~~~~~~~~  266 (399)
T 3tqx_A          200 LADKYNALVMVDDSHAVGFIGEN--GRGTPEY-CGV----ADRVDILTGTLGKAL-G--GASGGYTSG---HKEIIEWLR  266 (399)
T ss_dssp             HHHHTTCEEEEECTTTTTTSSTT--SCCHHHH-HTC----TTCCSEEEEESSSSS-C--SSCCEEEEE---CHHHHHHHH
T ss_pred             HHHHcCCEEEEECCccccccCCC--CCchHHh-hCC----CCCCcEEEecchHhc-c--cCceEEEEc---CHHHHHHHH
Confidence            99999999999999963223221  1222222 111    011238899999998 4  455599998   999999887


Q ss_pred             Hhhh---ccccCChHHHHHHHHHcCCCCCCChhHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecc
Q 009517          378 KVAS---VNLCSNISGQILASLVMSPPKVGDESYESYC-AERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPR  453 (533)
Q Consensus       378 ~~~~---~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~  453 (533)
                      ....   .+.+.+++.+.++..+++           +. ++.++++++++++++++.+.|+++ |+.+.++.+++ +|+.
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~-~~~~  333 (399)
T 3tqx_A          267 NRSRPYLFSNTVAPVIVATSLKVLE-----------LLKTEGPQLRKQLQENSRYFRAGMEKL-GFQLVPGNHPI-IPVM  333 (399)
T ss_dssp             HHCHHHHSSCCCCHHHHHHHHHHHH-----------HHHHTHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCSSSE-EEEE
T ss_pred             HhCcceeccCCCcHHHHHHHHHHHH-----------HHhhccHHHHHHHHHHHHHHHHHHHHc-CCCcCCCCCCE-EEEE
Confidence            7532   233567777777777663           22 446788899999999999999998 88888777765 5544


Q ss_pred             cCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 009517          454 IQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~~  527 (533)
                      ++...            +...++..++ ++||.+.|+..+....+.+++||+++  .+++++++++++|+++++++
T Consensus       334 ~~~~~------------~~~~~~~~l~-~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  396 (399)
T 3tqx_A          334 LGDAQ------------LATNMADHLL-QEGIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQVGKKL  396 (399)
T ss_dssp             EECHH------------HHHHHHHHHH-HTTEECCEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             eCCHH------------HHHHHHHHHH-HCCCEEeeeCCCCCCCCCceEEEEeecCCCHHHHHHHHHHHHHHHHHh
Confidence            43111            1344454554 57999999766543455669999996  78899999999999998764

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=100.00  E-value=2.1e-33  Score=290.70  Aligned_cols=324  Identities=16%  Similarity=0.200  Sum_probs=246.0

Q ss_pred             CHHHHHHHHHHHhcCCCC---CccccCC--CcccHHHHHHHHHHHHhhcCCCC-CCCCEEEcCChHHHHHHHHHHh----
Q 009517          141 SADSIERAWQILDQIPGR---ATGAYSH--SQGIKGLRDTIAAGIEARDGFPA-DPNDIFLTDGASPAVHMMMQLL----  210 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~---~~~~Y~~--~~G~~~lr~aia~~~~~~~g~~~-~~~~i~~t~G~~~al~~~~~~l----  210 (533)
                      |+.+++++.+.+.+....   ....|++  ..+..+++++++++++      . ++++|++|+|+++|+..+++.+    
T Consensus        41 ~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~------~~~~~~v~~~~g~t~a~~~~~~~~~~~~  114 (420)
T 1t3i_A           41 PRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFIN------ARSPREIVYTRNATEAINLVAYSWGMNN  114 (420)
T ss_dssp             CHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTT------CSCGGGEEEESSHHHHHHHHHHHTHHHH
T ss_pred             CHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcC------CCCCCeEEEcCChHHHHHHHHHHhhhcc
Confidence            788999998888763210   1345654  5678899999999975      3 5689999999999999999999    


Q ss_pred             ccCCCCeEEEcCCcCcc----hHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccC
Q 009517          211 IRSENDGILCPIPQYPL----YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV  286 (533)
Q Consensus       211 ~~~~gd~Vlv~~p~~~~----~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~  286 (533)
                      . ++||+|+++.|+|+.    +...++..|++++.++.+.  ++.+|++++++++++      ++++|++++|+||||.+
T Consensus       115 ~-~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~------~~~~v~~~~~~nptG~~  185 (420)
T 1t3i_A          115 L-KAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDE--QESFDLEHFKTLLSE------KTKLVTVVHISNTLGCV  185 (420)
T ss_dssp             C-CTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCT--TSSBCHHHHHHHCCT------TEEEEEEESBCTTTCBB
T ss_pred             c-CCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccCC--CCCcCHHHHHHhhCC------CceEEEEeCCcccccCc
Confidence            7 799999999999998    5667778899999999873  567999999999976      79999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEe
Q 009517          287 LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVT  366 (533)
Q Consensus       287 ~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~  366 (533)
                      ++   +++|+++|++||+++|+||+|..+..    + .++..    +   ..+   +++.|+||.+ |++|  +||+++ 
T Consensus       186 ~~---l~~i~~l~~~~~~~li~D~a~~~~~~----~-~~~~~----~---~~d---i~~~s~sK~~-~~~g--~G~~~~-  243 (420)
T 1t3i_A          186 NP---AEEIAQLAHQAGAKVLVDACQSAPHY----P-LDVQL----I---DCD---WLVASGHKMC-APTG--IGFLYG-  243 (420)
T ss_dssp             CC---HHHHHHHHHHTTCEEEEECTTTTTTS----C-CCHHH----H---TCS---EEEEEGGGTT-SCTT--CEEEEE-
T ss_pred             CC---HHHHHHHHHHcCCEEEEEhhhccCCc----c-Cchhh----c---CCC---EEEEehhhhc-CCCc--eEEEEE-
Confidence            99   89999999999999999999985322    1 12222    2   234   7899999977 7677  899998 


Q ss_pred             cCCHHHHHHHHHhhh---------------------ccccCChHHHHHHHH-HcCCCCCCChhHHHHHH--HHHHHHHHH
Q 009517          367 GFSAEVREQIYKVAS---------------------VNLCSNISGQILASL-VMSPPKVGDESYESYCA--ERDGILSSL  422 (533)
Q Consensus       367 ~~~~~~~~~l~~~~~---------------------~~~~~~~~~q~a~~~-~L~~~~~~~~~~~~~~~--~~~~~~~~~  422 (533)
                        ++++++.+.....                     ...+.+.+.+.++.. +++           +..  .++.+.+++
T Consensus       244 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~-----------~~~~~~~~~~~~~~  310 (420)
T 1t3i_A          244 --KEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVD-----------YLTDLGMENIHNYE  310 (420)
T ss_dssp             --CHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHH-----------HHHHHCHHHHHHHH
T ss_pred             --chHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHH-----------HHHHhHHHHHHHHH
Confidence              8888887755431                     112455666655443 342           111  256778889


Q ss_pred             HHHHHHHHHHHhcCCCceEecCC------ceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCC
Q 009517          423 ARRAKTLEDAFNSLEGITCNKAE------GAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQV  496 (533)
Q Consensus       423 ~~~~~~l~~~L~~~~g~~~~~~~------gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~  496 (533)
                      +++++++.+.|++++|+.+..+.      ++++.| .++  .          . +...++ +.|.++||.+.||..|...
T Consensus       311 ~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~-~~~--~----------~-~~~~~~-~~l~~~gi~v~~~~~~~~~  375 (420)
T 1t3i_A          311 VELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASF-NVA--G----------L-HASDVA-TMVDQDGIAIRSGHHCTQP  375 (420)
T ss_dssp             HHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEE-EET--T----------B-CHHHHH-HHHHTTTEECBCSCTTCHH
T ss_pred             HHHHHHHHHHHHhCCCeEEeCCCccccccCCEEEE-EEC--C----------C-CHHHHH-HHHHHCCeEEeeccccchH
Confidence            99999999999998899888774      677665 343  1          1 123333 5677899999999755311


Q ss_pred             ----CC-CceEEEEec--CCcCcHHHHHHHHHHHHHHHHH
Q 009517          497 ----PG-TWHFRCTIL--PQEDKIPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       497 ----~g-~~~iRis~~--~~~e~i~~~~~~l~~~l~~~~~  529 (533)
                          -+ .+++||++.  .+++++++++++|+++++.+.+
T Consensus       376 ~~~~~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~~~~  415 (420)
T 1t3i_A          376 LHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRFFSD  415 (420)
T ss_dssp             HHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHHTC-
T ss_pred             HHHhcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence                01 348999997  5889999999999999887643

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=100.00  E-value=2e-33  Score=289.53  Aligned_cols=327  Identities=15%  Similarity=0.118  Sum_probs=243.7

Q ss_pred             CHHHHHHHHHHHhcCCC-CCccccC--CCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCe
Q 009517          141 SADSIERAWQILDQIPG-RATGAYS--HSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDG  217 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~-~~~~~Y~--~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~  217 (533)
                      |+.+++++.+.+..... .....|.  ...+..+|+++++++++      .+ +.|++++| ++++..+++.++ ++||.
T Consensus        61 ~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g------~~-~~i~~~sG-s~a~~~~~~~~~-~~gd~  131 (401)
T 1fc4_A           61 HPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLG------ME-DAILYSSC-FDANGGLFETLL-GAEDA  131 (401)
T ss_dssp             CHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHT------CS-EEEEESCH-HHHHHTTHHHHC-CTTCE
T ss_pred             CHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHhC------CC-cEEEeCCh-HHHHHHHHHHHc-CCCCE
Confidence            68899998888765221 0011332  35678899999999984      33 55655554 779999999988 89999


Q ss_pred             EEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHH
Q 009517          218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD  297 (533)
Q Consensus       218 Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~  297 (533)
                      |+++.|+|..+...+...|.+++.++.       .|++++++.+++....+.++++|++++|+||||.+++   +++|++
T Consensus       132 v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~---~~~i~~  201 (401)
T 1fc4_A          132 IISDALNHASIIDGVRLCKAKRYRYAN-------NDMQELEARLKEAREAGARHVLIATDGVFSMDGVIAN---LKGVCD  201 (401)
T ss_dssp             EEEETTCCHHHHHHHHTSCSEEEEECT-------TCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC---HHHHHH
T ss_pred             EEEcchhHHHHHHHHHHcCCceEEECC-------CCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCC---HHHHHH
Confidence            999999999888888989999988873       4799999999865333336889999999999999999   999999


Q ss_pred             HHHHcCCEEEEccccc-cccc-cCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHH
Q 009517          298 FCKKEGLVLLADEVYQ-ENVY-VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQ  375 (533)
Q Consensus       298 l~~~~~~~lI~De~y~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~  375 (533)
                      +|++||+++|+||+|. ++.+ ++. ...   .. .++   .++ .++++.||||+++|++   .||+++   ++++++.
T Consensus       202 l~~~~~~~li~De~~~~g~~~~~g~-~~~---~~-~~~---~~~-~di~~~s~sK~~~~~~---gG~~~~---~~~~~~~  266 (401)
T 1fc4_A          202 LADKYDALVMVDDSHAVGFVGENGR-GSH---EY-CDV---MGR-VDIITGTLGKALGGAS---GGYTAA---RKEVVEW  266 (401)
T ss_dssp             HHHHTTEEEEEECTTTTTTSSTTSC-CHH---HH-TTC---TTC-CSEEEEESSSTTCSSS---CEEEEE---CHHHHHH
T ss_pred             HHHHcCCEEEEECcccccccCCCCC-ccH---HH-cCC---CcC-CcEEEecchhhccCCC---CEEEEc---CHHHHHH
Confidence            9999999999999995 7653 232 211   11 112   222 3488999999984434   499998   8999988


Q ss_pred             HHHhhh---ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEec
Q 009517          376 IYKVAS---VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFP  452 (533)
Q Consensus       376 l~~~~~---~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~  452 (533)
                      +.....   .+++.+++.+.++..+|+           +.++.+.++++++++++++.+.|+++ |+.+++ ..+.++|+
T Consensus       267 l~~~~~~~~~~~~~~~~~~~a~~~~l~-----------~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~  333 (401)
T 1fc4_A          267 LRQRSRPYLFSNSLAPAIVAASIKVLE-----------MVEAGSELRDRLWANARQFREQMSAA-GFTLAG-ADHAIIPV  333 (401)
T ss_dssp             HHHHCHHHHHSCCCCHHHHHHHHHHHH-----------HHHTCHHHHHHHHHHHHHHHHHHHHT-TCCBCC-SSSSEEEE
T ss_pred             HHHhCcCceeCCCCCHHHHHHHHHHHH-----------HHhcCHHHHHHHHHHHHHHHHHHHHc-CCcccC-CCCCEEEE
Confidence            876542   345788899988888773           22223567788899999999999998 888774 45566776


Q ss_pred             ccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 009517          453 RIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~~  527 (533)
                      +++.  ..          +...++.. |.++||.+.||..|+.+.+.+++||++.  .+++++++++++|+++++++
T Consensus       334 ~~~~--~~----------~~~~l~~~-l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  397 (401)
T 1fc4_A          334 MLGD--AV----------VAQKFARE-LQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQL  397 (401)
T ss_dssp             EEEC--HH----------HHHHHHHH-HHHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             EcCC--hH----------HHHHHHHH-HHHCCcEEeeecCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence            6541  10          12334444 4567999999998875445569999997  78999999999999998764

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=100.00  E-value=1.3e-33  Score=291.11  Aligned_cols=291  Identities=15%  Similarity=0.155  Sum_probs=221.8

Q ss_pred             ccccCCCcccH---HHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHH----HH
Q 009517          160 TGAYSHSQGIK---GLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA----SI  232 (533)
Q Consensus       160 ~~~Y~~~~G~~---~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~----~~  232 (533)
                      .+.|+. .|.+   +|+++++++++      .  +++++++|+++|+..+++.++ ++||+|+++.|+|+.+..    .+
T Consensus        53 ~~~Y~~-~~~~~~~~l~~~ia~~~g------~--~~~i~~~~g~~ai~~~~~~l~-~~gd~Vl~~~~~y~~~~~~~~~~~  122 (404)
T 1e5e_A           53 GYIYTR-LGNPTVSNLEGKIAFLEK------T--EACVATSSGMGAIAATVLTIL-KAGDHLISDECLYGCTHALFEHAL  122 (404)
T ss_dssp             SCCBTT-TCCHHHHHHHHHHHHHHT------C--SEEEEESSHHHHHHHHHHHHC-CTTCEEEEESCCCHHHHHHHHTHH
T ss_pred             CccccC-CcChHHHHHHHHHHHHhC------C--CcEEEeCChHHHHHHHHHHHh-CCCCEEEEeCCCchhHHHHHHHHH
Confidence            566877 5566   89999999974      2  478888888999999999988 799999999999999888    77


Q ss_pred             HHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHH-cCCEEEEccc
Q 009517          233 ALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK-EGLVLLADEV  311 (533)
Q Consensus       233 ~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~-~~~~lI~De~  311 (533)
                      +..|++++.++.+       |++++++++++      ++++|++++|+||||.+++   +++|+++|++ +|+++|+||+
T Consensus       123 ~~~g~~~~~v~~~-------d~~~l~~~i~~------~t~~v~l~~p~NptG~v~~---l~~i~~la~~~~~~~li~De~  186 (404)
T 1e5e_A          123 TKFGIQVDFINTA-------IPGEVKKHMKP------NTKIVYFETPANPTLKIID---MERVCKDAHSQEGVLVIADNT  186 (404)
T ss_dssp             HHTTCEEEEECTT-------STTHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHTSTTCEEEEECT
T ss_pred             HHcCCEEEEECCC-------CHHHHHHhcCC------CCcEEEEECCCCCCCcccC---HHHHHHHHHhhcCCEEEEECC
Confidence            8899999999864       67899998876      7999999999999999997   9999999999 9999999999


Q ss_pred             cccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCee-EEEEEecCCHHHHH-HHHHhhhc--cccCC
Q 009517          312 YQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRG-GYMEVTGFSAEVRE-QIYKVASV--NLCSN  387 (533)
Q Consensus       312 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~ri-G~v~~~~~~~~~~~-~l~~~~~~--~~~~~  387 (533)
                      |..+.+.  .+   +     ++   ..   ++++.|+||++ +++|+|+ ||+++   ++++++ .+......  +.+.+
T Consensus       187 ~~~~~~~--~~---~-----~~---~~---di~~~S~sK~~-~~~g~ri~G~~~~---~~~~~~~~l~~~~~~~~g~~~~  246 (404)
T 1e5e_A          187 FCSPMIT--NP---V-----DF---GV---DVVVHSATKYI-NGHTDVVAGLICG---KADLLQQIRMVGIKDITGSVIS  246 (404)
T ss_dssp             TTCTTTC--CG---G-----GG---TC---SEEEEETTTTT-TCSSCCCCEEEEE---CHHHHHHHHHTCCCCCCCCCCC
T ss_pred             CchhhhC--Cc---c-----cc---CC---EEEEEcCcccc-CCCCCCeEEEEEE---CHHHHHHHHHHHHHhCCCCCCC
Confidence            9987653  11   1     11   22   38899999999 7899998 99998   888887 77766543  45678


Q ss_pred             hHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------CCceEecCC----ceeE
Q 009517          388 ISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL--------------EGITCNKAE----GAMY  449 (533)
Q Consensus       388 ~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--------------~g~~~~~~~----gg~~  449 (533)
                      ++.+.++...|+..              ....++..++.+.+.+.|++.              ||+.+..++    |+|+
T Consensus       247 ~~~~~~~~~~l~~~--------------~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~  312 (404)
T 1e5e_A          247 PHDAWLITRGLSTL--------------NIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMI  312 (404)
T ss_dssp             HHHHHHHHHHHTTH--------------HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEE
T ss_pred             HHHHHHHHHhHhHH--------------HHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEE
Confidence            88998888887521              112222233334444444433              455554444    8888


Q ss_pred             EecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCC----------------------CCC--CceEEEE
Q 009517          450 LFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ----------------------VPG--TWHFRCT  505 (533)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~----------------------~~g--~~~iRis  505 (533)
                      .| +++.               ....+.+++++.|| +.+|..||.                      ..|  .++||||
T Consensus       313 ~~-~~~~---------------~~~~~~~~l~~~~i-~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis  375 (404)
T 1e5e_A          313 TF-ILKS---------------GFEGAKKLLDNLKL-ITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLS  375 (404)
T ss_dssp             EE-EETT---------------HHHHHHHHHHTCSS-SEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEE
T ss_pred             EE-EeCC---------------CHHHHHHHHHhCCC-ceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEE
Confidence            88 5541               11224567888999 777777762                      022  4699999


Q ss_pred             ecCCcCcHHHHHHHHHHHHHHHHH
Q 009517          506 ILPQEDKIPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       506 ~~~~~e~i~~~~~~l~~~l~~~~~  529 (533)
                      ++.  |++++++++|+++++...+
T Consensus       376 ~g~--e~~~~li~~l~~al~~~~~  397 (404)
T 1e5e_A          376 VGI--EDADELIADFKQGLDALLR  397 (404)
T ss_dssp             CCS--SCHHHHHHHHHHHHHHHHC
T ss_pred             eCC--CCHHHHHHHHHHHHHHHHH
Confidence            988  7899999999999988764

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=100.00  E-value=1.8e-33  Score=288.94  Aligned_cols=320  Identities=14%  Similarity=0.133  Sum_probs=243.0

Q ss_pred             cCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHhccCCC
Q 009517          137 QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSEN  215 (533)
Q Consensus       137 ~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~g  215 (533)
                      +...|+.+++++.+.+..       .|++.  ..++++++++++.+.+|.  +++ +|++|+|+++|+..+++.++ ++|
T Consensus        42 ~~~~~~~v~~a~~~~~~~-------~~~~~--~~~~~~~~~~~la~~~g~--~~~~~v~~t~g~t~al~~~~~~~~-~~g  109 (393)
T 1vjo_A           42 PSNAHPSVLQAMNVSPVG-------HLDPA--FLALMDEIQSLLRYVWQT--ENPLTIAVSGTGTAAMEATIANAV-EPG  109 (393)
T ss_dssp             CCCCCHHHHHHHSSCCCC-------TTSHH--HHHHHHHHHHHHHHHHTC--CCSCEEEESSCHHHHHHHHHHHHC-CTT
T ss_pred             CCCCCHHHHHHHhccccc-------ccCHH--HHHHHHHHHHHHHHHhCC--CCCcEEEEeCchHHHHHHHHHhcc-CCC
Confidence            444578877776554321       45542  568888888888888784  567 89999999999999999998 899


Q ss_pred             CeEEEcCCcCcc--hHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHH
Q 009517          216 DGILCPIPQYPL--YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQR  293 (533)
Q Consensus       216 d~Vlv~~p~~~~--~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~  293 (533)
                      |+|++++|+|++  +...++..|++++.++++.  ++.+|+++|++++++.     ++++|++++|+||||.+++   ++
T Consensus       110 d~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~---l~  179 (393)
T 1vjo_A          110 DVVLIGVAGYFGNRLVDMAGRYGADVRTISKPW--GEVFSLEELRTALETH-----RPAILALVHAETSTGARQP---LE  179 (393)
T ss_dssp             CEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT--TCCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CT
T ss_pred             CEEEEEcCChhHHHHHHHHHHcCCceEEEecCC--CCCCCHHHHHHHHhhC-----CceEEEEeccCCCcceecc---HH
Confidence            999999999999  8899999999999999875  4579999999999874     5889999999999999998   89


Q ss_pred             HHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHH
Q 009517          294 AIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVR  373 (533)
Q Consensus       294 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~  373 (533)
                      +|+++|+++|+++|+||+|.   + +..+ .++    ..+   ..+   +++.|+||++ +.+| |+||+++   +++++
T Consensus       180 ~i~~l~~~~~~~li~Dea~~---~-g~~~-~~~----~~~---~~d---i~~~s~sK~l-~~~~-~~G~l~~---~~~~~  239 (393)
T 1vjo_A          180 GVGELCREFGTLLLVDTVTS---L-GGVP-IFL----DAW---GVD---LAYSCSQKGL-GCSP-GASPFTM---SSRAI  239 (393)
T ss_dssp             THHHHHHHHTCEEEEECTTT---T-TTSC-CCT----TTT---TCS---EEECCSSSTT-CSCS-SCEEEEE---CHHHH
T ss_pred             HHHHHHHHcCCEEEEECCcc---c-cCcC-Ccc----ccc---Ccc---EEEEcCcccc-cCCC-ceEEEEE---CHHHH
Confidence            99999999999999999998   2 2211 111    111   223   7899999998 5566 9999998   88888


Q ss_pred             HHHHHh----h----------------hccc-cCChHHHHHHHHHcCCCCCCChhHHHHH-HHHHHHHHHHHHHHHHHHH
Q 009517          374 EQIYKV----A----------------SVNL-CSNISGQILASLVMSPPKVGDESYESYC-AERDGILSSLARRAKTLED  431 (533)
Q Consensus       374 ~~l~~~----~----------------~~~~-~~~~~~q~a~~~~L~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~  431 (533)
                      +.+...    .                ...+ +++.+.+.++..+|+.          .. ..++.++++++++++++.+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~----------~~~~~~~~~~~~~~~~~~~l~~  309 (393)
T 1vjo_A          240 EKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRL----------IAQEGLANCWQRHQKNVEYLWE  309 (393)
T ss_dssp             HHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHH----------HHHHCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHH----------HHHccHHHHHHHHHHHHHHHHH
Confidence            877432    0                1223 6788888888887741          11 2356788899999999999


Q ss_pred             HHhcCCCceEecCCc---eeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEe-c
Q 009517          432 AFNSLEGITCNKAEG---AMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTI-L  507 (533)
Q Consensus       432 ~L~~~~g~~~~~~~g---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~-~  507 (533)
                      .|+++ |+.+..+.+   +.++++.+  |.+         . +...++..+++++||.+.||..|.. .  +++||++ +
T Consensus       310 ~L~~~-g~~~~~~~~~~~~~~~~~~~--~~~---------~-~~~~~~~~l~~~~gi~v~~g~~~~~-~--~~iRis~~~  373 (393)
T 1vjo_A          310 RLEDI-GLSLHVEKEYRLPTLTTVCI--PDG---------V-DGKAVARRLLNEHNIEVGGGLGELA-G--KVWRVGLMG  373 (393)
T ss_dssp             HHHHT-TCCBSSCGGGBCSSEEEEEC--CTT---------C-CHHHHHHHHHHHHCEECEECCGGGT-T--TEEEEECCG
T ss_pred             HHHHc-CCcccCCccccCCcEEEEEc--CCC---------C-CHHHHHHHHHhhCCEEEecCccccC-C--CEEEEeCCc
Confidence            99998 888877765   22344333  211         1 2445555555545999999997752 2  3999995 3


Q ss_pred             --CCcCcHHHHHHHHHHHH
Q 009517          508 --PQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       508 --~~~e~i~~~~~~l~~~l  524 (533)
                        .+++++++++++|++++
T Consensus       374 ~~~~~~~i~~~~~~l~~~l  392 (393)
T 1vjo_A          374 FNSRKESVDQLIPALEQVL  392 (393)
T ss_dssp             GGCSHHHHHHHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHHHh
Confidence              45667999999998876

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=100.00  E-value=6.2e-33  Score=285.75  Aligned_cols=323  Identities=13%  Similarity=0.142  Sum_probs=243.7

Q ss_pred             CHHHHHHHHHHHhcCCCC-----CccccCCCcccHHHHHHHHHHHHhhcCCCC-CCCCEEEcCChHHHHHHHHHHh----
Q 009517          141 SADSIERAWQILDQIPGR-----ATGAYSHSQGIKGLRDTIAAGIEARDGFPA-DPNDIFLTDGASPAVHMMMQLL----  210 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~-----~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~-~~~~i~~t~G~~~al~~~~~~l----  210 (533)
                      |+.+++++.+++.+....     ....|.+..+..++|++++++++      . ++++|++|+|+++|+..+++.+    
T Consensus        36 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~------~~~~~~v~~~~g~t~a~~~~~~~~~~~~  109 (406)
T 1kmj_A           36 PSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFIN------ARSAEELVFVRGTTEGINLVANSWGNSN  109 (406)
T ss_dssp             CHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTT------CSCGGGEEEESSHHHHHHHHHHHTHHHH
T ss_pred             CHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcC------CCCCCeEEEeCChhHHHHHHHHHhhhhc
Confidence            788999998888763210     01123456778899999999875      3 5689999999999999999999    


Q ss_pred             ccCCCCeEEEcCCcCcch----HHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccC
Q 009517          211 IRSENDGILCPIPQYPLY----SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV  286 (533)
Q Consensus       211 ~~~~gd~Vlv~~p~~~~~----~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~  286 (533)
                      . ++||+|+++.|+|++.    ...++..|++++.++.++  ++.+|+++|++++++      ++++|++++|+||||.+
T Consensus       110 ~-~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~l~~------~~~~v~~~~~~nptG~~  180 (406)
T 1kmj_A          110 V-RAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNP--DGTLQLETLPTLFDE------KTRLLAITHVSNVLGTE  180 (406)
T ss_dssp             C-CTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCT--TSCBCGGGHHHHCCT------TEEEEEEESBCTTTCCB
T ss_pred             C-CCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCC--CCCcCHHHHHHHhcc------CCeEEEEeCCCccccCc
Confidence            7 7999999999998764    345677899999999874  467899999999976      79999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEe
Q 009517          287 LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVT  366 (533)
Q Consensus       287 ~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~  366 (533)
                      ++   +++|+++|++||+++|+||+|..+..    + .++..    +   ..+   +++.|+||.+ |++|  +||+++ 
T Consensus       181 ~~---l~~i~~l~~~~~~~li~D~~~~~g~~----~-~~~~~----~---~~d---~~~~s~~K~~-g~~G--~G~~~~-  238 (406)
T 1kmj_A          181 NP---LAEMITLAHQHGAKVLVDGAQAVMHH----P-VDVQA----L---DCD---FYVFSGHKLY-GPTG--IGILYV-  238 (406)
T ss_dssp             CC---HHHHHHHHHHTTCEEEEECTTTTTTS----C-CCHHH----H---TCS---EEEEEGGGTT-SCTT--CEEEEE-
T ss_pred             CC---HHHHHHHHHHcCCEEEEEchhhcCCC----C-Ccccc----c---CCC---EEEEEchhcc-CCCC--cEEEEE-
Confidence            99   99999999999999999999986321    1 12222    2   234   7899999998 7788  899998 


Q ss_pred             cCCHHHHHHHHHhhh----------------------ccccCChHHHHHHH-HHcCCCCCCChhHHHHH-HHHHHHHHHH
Q 009517          367 GFSAEVREQIYKVAS----------------------VNLCSNISGQILAS-LVMSPPKVGDESYESYC-AERDGILSSL  422 (533)
Q Consensus       367 ~~~~~~~~~l~~~~~----------------------~~~~~~~~~q~a~~-~~L~~~~~~~~~~~~~~-~~~~~~~~~~  422 (533)
                        ++++++.+.....                      ...+.+.+.+.++. .+++          ... ..++.+++++
T Consensus       239 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~----------~~~~~~~~~~~~~~  306 (406)
T 1kmj_A          239 --KEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALE----------YVSALGLNNIAEYE  306 (406)
T ss_dssp             --CHHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHH----------HHHHHCHHHHHHHH
T ss_pred             --eHHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHH----------HHHHcCHHHHHHHH
Confidence              8988887754321                      11234555655544 4442          111 1356778888


Q ss_pred             HHHHHHHHHHHhcCCCceEecC--CceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCC----
Q 009517          423 ARRAKTLEDAFNSLEGITCNKA--EGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQV----  496 (533)
Q Consensus       423 ~~~~~~l~~~L~~~~g~~~~~~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~----  496 (533)
                      +++++++.+.|++++|+.++.+  .++++.|. ++  .          . +...+. +.|.++||.+.||..|...    
T Consensus       307 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~-~~--~----------~-~~~~~~-~~l~~~gi~v~~g~~~~~~~~~~  371 (406)
T 1kmj_A          307 QNLMHYALSQLESVPDLTLYGPQNRLGVIAFN-LG--K----------H-HAYDVG-SFLDNYGIAVRTGHHCAMPLMAY  371 (406)
T ss_dssp             HHHHHHHHHHHTTSTTEEEESCTTCCSEEEEE-ET--T----------C-CHHHHH-HHHHHTTEECEEECTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCeEEecCCCcCCEEEEE-EC--C----------C-CHHHHH-HHHhhCCcEEEeccccchHHHHh
Confidence            9999999999999889998888  78887773 43  1          1 133334 5667789999999865310    


Q ss_pred             -CCCceEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 009517          497 -PGTWHFRCTIL--PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       497 -~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~~  527 (533)
                       ...++|||++.  .+++++++++++|+++++.+
T Consensus       372 ~g~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~l  405 (406)
T 1kmj_A          372 YNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRLL  405 (406)
T ss_dssp             TTCSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHhh
Confidence             11349999997  48899999999999988754

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=100.00  E-value=9.9e-33  Score=282.60  Aligned_cols=319  Identities=13%  Similarity=0.070  Sum_probs=236.9

Q ss_pred             CHHHHHHHHHHHhcCCC-C--CccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCe
Q 009517          141 SADSIERAWQILDQIPG-R--ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDG  217 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~-~--~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~  217 (533)
                      |+.+.+++.+.+.+... .  ....|....+..+||++++++++      .+ +.|++++| ++++..+++.+. ++||.
T Consensus        55 ~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g------~~-~~i~~~sG-t~a~~~~~~~~~-~~gd~  125 (384)
T 1bs0_A           55 HPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLG------YS-RALLFISG-FAANQAVIAAMM-AKEDR  125 (384)
T ss_dssp             CHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHT------CS-EEEEESCH-HHHHHHHHHHHC-CTTCE
T ss_pred             CHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhC------CC-cEEEeCCc-HHHHHHHHHHhC-CCCcE
Confidence            68889988888765211 0  12223556778999999999984      32 44555555 899999999988 89999


Q ss_pred             EEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHH
Q 009517          218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD  297 (533)
Q Consensus       218 Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~  297 (533)
                      |+++.|+|..+...+...|.+++.+|.       .|++++++.+++.   .+++++|++++||||||.+++   +++|++
T Consensus       126 v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~---~~~~~~v~~~~~~nptG~~~~---l~~i~~  192 (384)
T 1bs0_A          126 IAADRLSHASLLEAASLSPSQLRRFAH-------NDVTHLARLLASP---CPGQQMVVTEGVFSMDGDSAP---LAEIQQ  192 (384)
T ss_dssp             EEEETTCCHHHHHHHHTSSSEEEEECT-------TCHHHHHHHHHSC---CSSCEEEEEESBCTTTCCBCC---HHHHHH
T ss_pred             EEEcccccHHHHHHHHHcCCCEEEeCC-------CCHHHHHHHHHhc---CCCCeEEEEeCCCCCCCCccC---HHHHHH
Confidence            999999999999999999999998873       4799999998752   113788888899999999999   889999


Q ss_pred             HHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHH
Q 009517          298 FCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY  377 (533)
Q Consensus       298 l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~  377 (533)
                      +|++||+++|+||+|..+.+...  ...+..   .++ ..++   +++.||||++ |++|   ||+++   ++++++.+.
T Consensus       193 l~~~~~~~li~De~~~~~~~~~~--~~~~~~---~~~-~~~d---i~~~s~sK~~-~~~G---G~~~~---~~~~~~~l~  256 (384)
T 1bs0_A          193 VTQQHNGWLMVDDAHGTGVIGEQ--GRGSCW---LQK-VKPE---LLVVTFGKGF-GVSG---AAVLC---SSTVADYLL  256 (384)
T ss_dssp             HHHHTTCEEEEECTTTTTTSSGG--GCCHHH---HTT-CCCS---EEEEESSSTT-SSCC---EEEEE---CHHHHHHHH
T ss_pred             HHHHcCcEEEEECCcccceecCC--CCchHH---hcC-CCCc---EEEeeccchh-hccC---cEEEe---CHHHHHHHH
Confidence            99999999999999987654211  111111   111 0234   8899999998 6666   99998   899998887


Q ss_pred             Hhhh---ccccCChHHHHHHHHHcCCCCCCChhHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEec
Q 009517          378 KVAS---VNLCSNISGQILASLVMSPPKVGDESYESYCA--ERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFP  452 (533)
Q Consensus       378 ~~~~---~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~  452 (533)
                      ....   .+.+++++.+.++.++|+           ..+  +.++++++++++++++.+.|+++ |+.+.++ ++.++|+
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~al~-----------~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~-~~~~~~~  323 (384)
T 1bs0_A          257 QFARHLIYSTSMPPAQAQALRASLA-----------VIRSDEGDARREKLAALITRFRAGVQDL-PFTLADS-CSAIQPL  323 (384)
T ss_dssp             HHCHHHHSSBCCCHHHHHHHHHHHH-----------HHHSHHHHHHHHHHHHHHHHHHHHHTTS-SCEECSC-CSSBCCE
T ss_pred             HhchhhhcCCCCCHHHHHHHHHHHH-----------HHhccccHHHHHHHHHHHHHHHHHHHhc-CCcccCC-CCCEEEE
Confidence            6531   234678888888777763           223  45678888999999999999998 8887654 4455665


Q ss_pred             ccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHH
Q 009517          453 RIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDF  523 (533)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~  523 (533)
                      .++  ...          +...++..+ .++||.+.||..|+.+.+.+++||+++  .+++++++++++|+++
T Consensus       324 ~~~--~~~----------~~~~l~~~l-~~~gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~  383 (384)
T 1bs0_A          324 IVG--DNS----------RALQLAEKL-RQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN  383 (384)
T ss_dssp             EEE--SHH----------HHHHHHHHH-HHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred             EeC--CHH----------HHHHHHHHH-HHCCcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence            553  110          123444444 456999999998874445569999997  4889999999998764

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=100.00  E-value=3.7e-33  Score=285.27  Aligned_cols=328  Identities=14%  Similarity=0.130  Sum_probs=237.6

Q ss_pred             CHHHHHHHHHHHhcCCCC----CccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc---C
Q 009517          141 SADSIERAWQILDQIPGR----ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR---S  213 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~----~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~---~  213 (533)
                      |+.+++++.+++.+....    ....|.+..+..+|+++++++++      +++++|++|+|+++|+..+++.+..   +
T Consensus        14 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g------~~~~~v~~~~g~t~a~~~~~~~~~~~~~~   87 (384)
T 1eg5_A           14 DDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLG------VSPSEIFFTSCATESINWILKTVAETFEK   87 (384)
T ss_dssp             CHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHT------SCGGGEEEESCHHHHHHHHHHHHHHHTTT
T ss_pred             CHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcC------CCCCeEEEECCHHHHHHHHHHhhhhhccC
Confidence            789999999888752110    11224456678899999999985      5678999999999999999999862   5


Q ss_pred             CCCeEEEcCCcCcchHHHH---HHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHH
Q 009517          214 ENDGILCPIPQYPLYSASI---ALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE  290 (533)
Q Consensus       214 ~gd~Vlv~~p~~~~~~~~~---~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~  290 (533)
                      +||+|+++.|+|+.+...+   ...|++++.++.++  ++.+|+++|++++++      ++++|++++|+||||.+++  
T Consensus        88 ~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~--  157 (384)
T 1eg5_A           88 RKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDS--RGVVKLEELEKLVDE------DTFLVSIMAANNEVGTIQP--  157 (384)
T ss_dssp             TCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCT--TSCBCHHHHHHHCCT------TEEEEEEESBCTTTCBBCC--
T ss_pred             CCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCC--CCccCHHHHHHHhCC------CCeEEEEECCCCCcccccC--
Confidence            8999999999999886665   67899999999874  467999999999976      7999999999999999999  


Q ss_pred             HHHHHHHHHHHcC--CEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecC
Q 009517          291 NQRAIVDFCKKEG--LVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGF  368 (533)
Q Consensus       291 ~l~~i~~l~~~~~--~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~  368 (533)
                       +++|.++|+++|  ++||+||+|.   |+. .+ .++    ..+   ..   .+++.|+||.+ |++|  +||+++   
T Consensus       158 -~~~i~~l~~~~~~~~~li~Dea~~---~~~-~~-~~~----~~~---~~---di~~~s~sK~~-g~~G--~G~~~~---  215 (384)
T 1eg5_A          158 -VEDVTRIVKKKNKETLVHVDAVQT---IGK-IP-FSL----EKL---EV---DYASFSAHKFH-GPKG--VGITYI---  215 (384)
T ss_dssp             -HHHHHHHHHHHCTTCEEEEECTTT---TTT-SC-CCC----TTT---CC---SEEEEEGGGGT-SCTT--CEEEEE---
T ss_pred             -HHHHHHHHHhcCCceEEEEEhhhh---cCC-cc-cCc----hhc---CC---CEEEecHHHhc-CCCc--eEEEEE---
Confidence             789999999999  9999999997   322 11 111    111   12   37899999987 7888  799998   


Q ss_pred             CHHH--HHHHHHh----hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEe
Q 009517          369 SAEV--REQIYKV----ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCN  442 (533)
Q Consensus       369 ~~~~--~~~l~~~----~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~  442 (533)
                      ++++  ...+...    ....++++.+.+.++..+|+          .+.+++++++++++++++++.+.|++ +|+.+.
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~----------~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~  284 (384)
T 1eg5_A          216 RKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAME----------IAVEELSEAAKHMEKLRSKLVSGLMN-LGAHII  284 (384)
T ss_dssp             CTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHH----------HHHHTHHHHHHHHHHHHHHHHHHHHT-TTCEEC
T ss_pred             cCCCccccccccCcccccccCCCCChHHHHHHHHHHH----------HHHHhHHHHHHHHHHHHHHHHHHhCC-CCeEEe
Confidence            6654  2211111    01345778888888877774          12345677888999999999999998 488887


Q ss_pred             cCC-ce--eEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCC----------------CCceEE
Q 009517          443 KAE-GA--MYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVP----------------GTWHFR  503 (533)
Q Consensus       443 ~~~-gg--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~----------------g~~~iR  503 (533)
                      .+. ++  .++++.+  +.          . +...+. +.|.++||.+.||..|+...                +.++||
T Consensus       285 ~~~~~~~~~~~~~~~--~~----------~-~~~~~~-~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iR  350 (384)
T 1eg5_A          285 TPLEISLPNTLSVSF--PN----------I-RGSTLQ-NLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIR  350 (384)
T ss_dssp             SCTTSBCTTEEEEEC--TT----------C-CHHHHH-HHHHHTTEECBC------------CHHHHTTCCHHHHHHEEE
T ss_pred             CCcccCCCCEEEEEe--CC----------C-CHHHHH-HHHhhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEE
Confidence            652 21  2233222  21          1 233444 44567999999998875311                135999


Q ss_pred             EEec--CCcCcHHHHHHHHHHHHHHHHHHh
Q 009517          504 CTIL--PQEDKIPAIVTRLTDFHKNFMDKF  531 (533)
Q Consensus       504 is~~--~~~e~i~~~~~~l~~~l~~~~~~~  531 (533)
                      |+++  .+++++++++++|+++++++++..
T Consensus       351 i~~~~~~~~~~i~~~~~~l~~~~~~~~~~~  380 (384)
T 1eg5_A          351 ISLCKYNTEEEVDYFLKKIEEILSFLDLTG  380 (384)
T ss_dssp             EECCTTCCHHHHHHHHHHHHHHHHHC----
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence            9997  789999999999999998876543

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=100.00  E-value=2.9e-33  Score=290.68  Aligned_cols=331  Identities=13%  Similarity=0.130  Sum_probs=234.5

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHH---HhccCCCCe
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQ---LLIRSENDG  217 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~---~l~~~~gd~  217 (533)
                      |+.+++++.+++..... ....|.+..+..+|++++++++.   | + .+++|++|+|+++|+..+++   .+. ++| +
T Consensus        59 ~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~l~~~la~~~~---~-~-~~~~v~~~~g~~~a~~~~~~~a~~~~-~~~-~  130 (426)
T 1sff_A           59 HPKVVAAVEAQLKKLSH-TCFQVLAYEPYLELCEIMNQKVP---G-D-FAKKTLLVTTGSEAVENAVKIARAAT-KRS-G  130 (426)
T ss_dssp             CHHHHHHHHHHTTTCSC-CCTTTEECHHHHHHHHHHHHHSS---C-S-SCEEEEEESSHHHHHHHHHHHHHHHH-TCC-E
T ss_pred             CHHHHHHHHHHHHhCCC-ccccccCCHHHHHHHHHHHHhCC---c-c-cccEEEEeCchHHHHHHHHHHHHHhh-CCC-e
Confidence            68899999888865322 12256777889999999999973   2 1 34899999999999999988   565 565 8


Q ss_pred             EEEcCCcCcchH-HHHHHhCCe-------------EEEEecCC---CCCCCCCHHHHHHHHHHHHhcCCCeeEEEEe-CC
Q 009517          218 ILCPIPQYPLYS-ASIALHGGT-------------LVPYYLDE---ATGWGLETSEVKKQLEAAKAKGITVRALVVI-NP  279 (533)
Q Consensus       218 Vlv~~p~~~~~~-~~~~~~g~~-------------~~~v~~~~---~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~-~p  279 (533)
                      |++++|+|+++. ..+...|.+             ++.++++.   ..++.+|+++|++++++.. .+.++++|+++ ++
T Consensus       131 vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~-~~~~~~~v~~~p~~  209 (426)
T 1sff_A          131 TIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDA-APEDIAAIVIEPVQ  209 (426)
T ss_dssp             EEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTC-CGGGEEEEEECSBC
T ss_pred             EEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhcc-CCCceEEEEEeccc
Confidence            999999998865 455665653             66677643   1134578999999997410 01167888775 56


Q ss_pred             CCCCc-cCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCC
Q 009517          280 GNPTG-QVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGK  358 (533)
Q Consensus       280 ~NPtG-~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~  358 (533)
                      +| || .++|++++++|+++|++||++||+||+|.+|.+.+.  ..++..  .+.   .++     +.||||++ |+ |+
T Consensus       210 ~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~--~~~~~~--~~~---~~d-----i~s~sK~~-~~-Gl  274 (426)
T 1sff_A          210 GE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGT--LFAMEQ--MGV---APD-----LTTFAKSI-AG-GF  274 (426)
T ss_dssp             TT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSGGGG--TTS---CCS-----EEEECGGG-GT-SS
T ss_pred             CC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccc--hhhhhh--cCC---CCC-----EEEEcccc-cC-CC
Confidence            78 99 789999999999999999999999999999776542  121111  111   244     45999999 65 99


Q ss_pred             eeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Q 009517          359 RGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNS--  435 (533)
Q Consensus       359 riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--  435 (533)
                      |+||+++   ++++++.+..... .++++++++|.++.++|+           +.+. ..+.++++++++.+++.|++  
T Consensus       275 riG~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~a~~aal~-----------~~~~-~~~~~~~~~~~~~l~~~l~~~~  339 (426)
T 1sff_A          275 PLAGVTG---RAEVMDAVAPGGLGGTYAGNPIACVAALEVLK-----------VFEQ-ENLLQKANDLGQKLKDGLLAIA  339 (426)
T ss_dssp             CCEEEEE---EHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHH-----------HHHH-TTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEE---cHHHHhhhccCCcCcCCCCCHHHHHHHHHHHH-----------HHHh-cCHHHHHHHHHHHHHHHHHHHH
Confidence            9999998   8888877654322 567789999999887773           1111 23445566666666666654  


Q ss_pred             --CCCceEecCCceeEEecccCC------CHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec
Q 009517          436 --LEGITCNKAEGAMYLFPRIQL------PEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL  507 (533)
Q Consensus       436 --~~g~~~~~~~gg~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~  507 (533)
                        ++.+..+.+. |+|+|+++..      |...          +...++..+ .++||.+.||..|.     ++|||+++
T Consensus       340 ~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~----------~~~~l~~~l-~~~gi~v~~~~~~~-----~~iRi~~~  402 (426)
T 1sff_A          340 EKHPEIGDVRGL-GAMIAIELFEDGDHNKPDAK----------LTAEIVARA-RDKGLILLSCGPYY-----NVLRILVP  402 (426)
T ss_dssp             HTCTTEEEEEEE-TTEEEEEEBGGGCTTSBCHH----------HHHHHHHHH-HHTTEECEEESTTS-----CEEEECCC
T ss_pred             HhCCCeEEEEEE-EEEEEEEEecCccccCCChH----------HHHHHHHHH-HHCCcEEecCCCCC-----CEEEEECC
Confidence              4445555666 4677876631      1110          123444454 46799999987642     38999984


Q ss_pred             --CCcCcHHHHHHHHHHHHHHH
Q 009517          508 --PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       508 --~~~e~i~~~~~~l~~~l~~~  527 (533)
                        .+++++++++++|+++++++
T Consensus       403 ~~~~~~~i~~~~~~l~~~l~~~  424 (426)
T 1sff_A          403 LTIEDAQIRQGLEIISQCFDEA  424 (426)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHHH
Confidence              78999999999999998765

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=100.00  E-value=4e-33  Score=285.73  Aligned_cols=319  Identities=19%  Similarity=0.196  Sum_probs=236.1

Q ss_pred             CHHHHHHHHHHHhcCC--C-CCccccCC-CcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHh-ccCCC
Q 009517          141 SADSIERAWQILDQIP--G-RATGAYSH-SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL-IRSEN  215 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~--~-~~~~~Y~~-~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~~g  215 (533)
                      |+.+++++.+.+....  + .....|++ ..+..+++++++++++      .++++|++|+|+++++..+++.+ . ++|
T Consensus        29 ~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g------~~~~~v~~~~g~t~a~~~~~~~~~~-~~g  101 (390)
T 1elu_A           29 PTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFN------VDPNTITITDNVTTGCDIVLWGLDW-HQG  101 (390)
T ss_dssp             CHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTT------SCGGGEEEESSHHHHHHHHHHHSCC-CTT
T ss_pred             CHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcC------CCHHHEEEeCChHHHHHHHHhCCCC-CCC
Confidence            6788998888776521  0 00114554 4678899999999974      56779999999999999999999 6 799


Q ss_pred             CeEEEcCCcCcchHHH----HHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHH
Q 009517          216 DGILCPIPQYPLYSAS----IALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEEN  291 (533)
Q Consensus       216 d~Vlv~~p~~~~~~~~----~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~  291 (533)
                      |+|+++.|+|+.+...    ++..|++++.++++.+.++.+|++.|++++++      ++++|++++|+||||.+++   
T Consensus       102 d~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---  172 (390)
T 1elu_A          102 DEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGP------KTRLVILSHLLWNTGQVLP---  172 (390)
T ss_dssp             CEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCT------TEEEEEEESBCTTTCCBCC---
T ss_pred             CEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcCC------CceEEEEeccccCCceecC---
Confidence            9999999999997754    46679999999987434678999999999875      7999999999999999999   


Q ss_pred             HHHHHHHHH----HcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEec
Q 009517          292 QRAIVDFCK----KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTG  367 (533)
Q Consensus       292 l~~i~~l~~----~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~  367 (533)
                      +++|+++|+    +||+++|+||+|..    +..+ ..+    ...   ..+   +++.|+||.+.  +|.++||+++  
T Consensus       173 ~~~i~~l~~~~~~~~~~~li~Dea~~~----g~~~-~~~----~~~---~~d---~~~~s~~K~~~--~~~g~G~~~~--  233 (390)
T 1elu_A          173 LAEIMAVCRRHQGNYPVRVLVDGAQSA----GSLP-LDF----SRL---EVD---YYAFTGHKWFA--GPAGVGGLYI--  233 (390)
T ss_dssp             HHHHHHHHHHCCSSSCCEEEEECTTTB----TTBC-CCT----TTS---CCS---EEEEESSSTTC--CCTTCEEEEE--
T ss_pred             HHHHHHHHhhhhhhcCcEEEEEccccc----CCcC-CCh----hhc---CCC---EEEcccccccc--CCCceEEEEE--
Confidence            899999999    99999999999974    2111 111    111   233   78999999543  3677999998  


Q ss_pred             CCHHHHHHHHHhh----------------------h-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHH
Q 009517          368 FSAEVREQIYKVA----------------------S-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLAR  424 (533)
Q Consensus       368 ~~~~~~~~l~~~~----------------------~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (533)
                       ++++++.+....                      . ..++++...+.++..+++.       +. ...+++++++++++
T Consensus       234 -~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~-------l~-~~~~~~~~~~~~~~  304 (390)
T 1elu_A          234 -HGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQL-------HQ-RQGTAEERYQAICQ  304 (390)
T ss_dssp             -CTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHH-------HH-HHCCHHHHHHHHHH
T ss_pred             -CHHhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHH-------HH-HcCCHHHHHHHHHH
Confidence             777776654321                      1 2345566777766665531       00 01126778888999


Q ss_pred             HHHHHHHHHhcCCCceEec---CCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCce
Q 009517          425 RAKTLEDAFNSLEGITCNK---AEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWH  501 (533)
Q Consensus       425 ~~~~l~~~L~~~~g~~~~~---~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~  501 (533)
                      +++++.+.|++++|+.++.   +.++|+.| +++..           . +...++.. |.++||.+.||.      +.++
T Consensus       305 ~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~-~~~~~-----------~-~~~~~~~~-l~~~gi~v~~~~------~~~~  364 (390)
T 1elu_A          305 RSEFLWRGLNQLPHVHCLATSAPQAGLVSF-TVDSP-----------L-GHRAIVQK-LEEQRIYLRTIA------DPDC  364 (390)
T ss_dssp             HHHHHHHHHHHSTTEEESCSSCCSSSEEEE-EECSS-----------S-CHHHHHHH-HHHTTEECEEET------TTTE
T ss_pred             HHHHHHHHHHhcCCcEEecCccccccEEEE-EcCCC-----------C-CHHHHHHH-HHHCCEEEEecC------CCCe
Confidence            9999999999988988874   46887776 45311           1 23444444 467899999975      2249


Q ss_pred             EEEEec--CCcCcHHHHHHHHHHH
Q 009517          502 FRCTIL--PQEDKIPAIVTRLTDF  523 (533)
Q Consensus       502 iRis~~--~~~e~i~~~~~~l~~~  523 (533)
                      |||++.  .+++++++++++|+++
T Consensus       365 iRis~~~~~~~~~i~~~~~~l~~~  388 (390)
T 1elu_A          365 IRACCHYITDEEEINHLLARLADF  388 (390)
T ss_dssp             EEEECCTTCCHHHHHHHHHHHTTC
T ss_pred             EEEecccCCCHHHHHHHHHHHHhh
Confidence            999984  8889999999988753

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=100.00  E-value=3.2e-32  Score=283.04  Aligned_cols=326  Identities=13%  Similarity=0.150  Sum_probs=241.5

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcc----cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCC
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQG----IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND  216 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G----~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd  216 (533)
                      ++.+++++.+++..... ....|....|    ..+|+++++++++      .  ++++++++|++++..+++++. ++||
T Consensus        80 ~~~v~~a~~~~~~~~~~-~~~~~~~~~G~~~~~~~l~~~la~~~g------~--~~~i~~~sGs~a~~~al~~l~-~~gd  149 (427)
T 2w8t_A           80 DPDVIAAGKEALEKFGS-GTCGSRMLNGTFHDHMEVEQALRDFYG------T--TGAIVFSTGYMANLGIISTLA-GKGE  149 (427)
T ss_dssp             CHHHHHHHHHHHHHHCS-CCCSCTTTTCCCHHHHHHHHHHHHHHT------C--SEEEEESCHHHHHHHHHHHHS-CTTC
T ss_pred             CHHHHHHHHHHHHHhCC-CCcccccccCCcHHHHHHHHHHHHHhC------C--CceEEecCcHHHHHHHHHHhc-CCCC
Confidence            68899999888875221 1223333333    4777888887763      2  356666667789999999988 8999


Q ss_pred             eEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHH
Q 009517          217 GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIV  296 (533)
Q Consensus       217 ~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~  296 (533)
                      .|+++.|+|..+...+...|++++.++.       .|+++|++++++...  .++++|++++++||||.+++   +++|+
T Consensus       150 ~vl~~~~~h~~~~~~~~~~g~~~~~~~~-------~d~~~le~~l~~~~~--~~~~~v~~~~~~n~tG~~~~---l~~l~  217 (427)
T 2w8t_A          150 YVILDADSHASIYDGCQQGNAEIVRFRH-------NSVEDLDKRLGRLPK--EPAKLVVLEGVYSMLGDIAP---LKEMV  217 (427)
T ss_dssp             EEEEETTCCHHHHHHHHHSCSEEEEECT-------TCHHHHHHHHHTSCS--SSCEEEEEESEETTTTEECC---HHHHH
T ss_pred             EEEECCcccHHHHHHHHHcCCeeEEeCC-------CCHHHHHHHHHhccC--CCCeEEEEcCCCCCCCCccC---HHHHH
Confidence            9999999999999999999999988873       589999999975210  15889999999999999998   99999


Q ss_pred             HHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHH
Q 009517          297 DFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQI  376 (533)
Q Consensus       297 ~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l  376 (533)
                      ++|++||+++|+||+|..+.++..  ...+... .++   .++ .+|++.||||++ |++|   ||+++   ++++++.+
T Consensus       218 ~l~~~~g~~li~Dea~~~~~~~~~--g~~~~~~-~~~---~~~-~di~~~s~sK~~-g~~g---G~v~~---~~~l~~~l  283 (427)
T 2w8t_A          218 AVAKKHGAMVLVDEAHSMGFFGPN--GRGVYEA-QGL---EGQ-IDFVVGTFSKSV-GTVG---GFVVS---NHPKFEAV  283 (427)
T ss_dssp             HHHHHTTCEEEEECTTTTTTSSTT--SCCHHHH-TTC---TTC-CSEEEEESSSTT-CSCC---EEEEE---CCTTGGGG
T ss_pred             HHHHHcCCEEEEECCccccccCCC--CCchHhh-cCC---CcC-CcEEEecchhhh-ccCC---CEEEe---CHHHHHHH
Confidence            999999999999999999877522  1222221 112   222 358899999998 6666   99998   88888777


Q ss_pred             HHhh-h--ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEe-cC-CceeEEe
Q 009517          377 YKVA-S--VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCN-KA-EGAMYLF  451 (533)
Q Consensus       377 ~~~~-~--~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~-~gg~~~~  451 (533)
                      .... .  .+.+.++..++++.++|+           ..++.+.++++++++++++.+.|+++ |+.+. .+ .+ .++|
T Consensus       284 ~~~~~~~~~~~~~~~~~~aa~~~al~-----------~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~-~~~~  350 (427)
T 2w8t_A          284 RLACRPYIFTASLPPSVVATATTSIR-----------KLMTAHEKRERLWSNARALHGGLKAM-GFRLGTETCDS-AIVA  350 (427)
T ss_dssp             GGTCHHHHSSCCCCHHHHHHHHHHHH-----------HHTSCHHHHHHHHHHHHHHHHHHHHH-TCEESCSSCCS-SEEE
T ss_pred             HHhcccccccCCCCHHHHHHHHHHHH-----------HHhcCHHHHHHHHHHHHHHHHHHHHc-CCcccCCCCCC-CEEE
Confidence            6542 1  334567777777666663           12223667888999999999999988 88887 55 45 4667


Q ss_pred             cccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHHHHHH
Q 009517          452 PRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFHKNFM  528 (533)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~~~  528 (533)
                      +.++...            ....++..++ ++||.+.||..|+.+.+.+++||+++  .++++|++++++|+++++++.
T Consensus       351 ~~~~~~~------------~~~~l~~~L~-~~Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~~~  416 (427)
T 2w8t_A          351 VMLEDQE------------QAAMMWQALL-DGGLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAGRAVG  416 (427)
T ss_dssp             EEESSHH------------HHHHHHHHHH-HTTEECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             EEECCHH------------HHHHHHHHHH-HCCeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHHHhC
Confidence            5554111            1334444544 56999999998876555679999997  599999999999999988764

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=100.00  E-value=2.6e-32  Score=281.16  Aligned_cols=328  Identities=14%  Similarity=0.112  Sum_probs=239.2

Q ss_pred             CHHHHHHHHHHHhcCCCC---CccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhc-cCCCC
Q 009517          141 SADSIERAWQILDQIPGR---ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI-RSEND  216 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~---~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-~~~gd  216 (533)
                      ++.+++++.+++.+....   ....|+...+..++|+++|++++      . +++|++++|++ ++..++..+. ..+||
T Consensus        62 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~------~-~~~i~~~sG~~-a~~~~~~~l~~~~~gd  133 (401)
T 2bwn_A           62 HPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQ------K-EAALVFSSAYN-ANDATLSTLRVLFPGL  133 (401)
T ss_dssp             CHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTT------C-SEEEEESCHHH-HHHHHHHHHHHHSTTC
T ss_pred             CHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhC------C-CcEEEECCcHH-HHHHHHHHHhcCCCCC
Confidence            568899988888652210   12346667788999999999974      2 47788887776 7777776653 14899


Q ss_pred             eEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHH
Q 009517          217 GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIV  296 (533)
Q Consensus       217 ~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~  296 (533)
                      +|+++.|+|+.+...++..|++++.++.+       |++++++.++...  .+++++|++++|+||||.+++   +++|+
T Consensus       134 ~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~le~~l~~~~--~~~~~~v~~~~~~nptG~~~~---l~~i~  201 (401)
T 2bwn_A          134 IIYSDSLNHASMIEGIKRNAGPKRIFRHN-------DVAHLRELIAADD--PAAPKLIAFESVYSMDGDFGP---IKEIC  201 (401)
T ss_dssp             EEEEETTCCHHHHHHHHHSCCCEEEECTT-------CHHHHHHHHHHSC--TTSCEEEEEESBCTTTCCBCC---HHHHH
T ss_pred             EEEECchhhHHHHHHHHHcCCeEEEEcCC-------CHHHHHHHHHhhc--cCCceEEEEecCcCCCCCcCC---HHHHH
Confidence            99999999999999999999999999864       7899999887420  026899999999999999999   89999


Q ss_pred             HHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHH
Q 009517          297 DFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQI  376 (533)
Q Consensus       297 ~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l  376 (533)
                      ++|++||+++|+||+|....|+..  ...+.. ..++    .+..++++.||||++ |++|   ||+++   ++++++.+
T Consensus       202 ~l~~~~~~~li~Dea~~~g~~~~~--g~~~~~-~~~~----~~~~~i~~~s~sK~~-~~~G---G~~~~---~~~~~~~l  267 (401)
T 2bwn_A          202 DIAEEFGALTYIDEVHAVGMYGPR--GAGVAE-RDGL----MHRIDIFNGTLAKAY-GVFG---GYIAA---SARMVDAV  267 (401)
T ss_dssp             HHHHHHTCEEEEECTTTTTTSSTT--SCCHHH-HHTC----GGGCSEEEEESSSTT-CSCC---EEEEE---CHHHHHHH
T ss_pred             HHHHHcCCEEEEeccccccccCCC--Cceeee-ccCc----cccCcEEEeechhhc-cCCC---CEEec---CHHHHHHH
Confidence            999999999999999996555322  112221 1111    111248899999999 6677   99998   89998887


Q ss_pred             HHhhh---ccccCChHHHHHHHHHcCCCCCCChhHHHHHHH--HHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEe
Q 009517          377 YKVAS---VNLCSNISGQILASLVMSPPKVGDESYESYCAE--RDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLF  451 (533)
Q Consensus       377 ~~~~~---~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~  451 (533)
                      .....   ...+.+++.+.++.++++           +.++  +++++++++++++++.+.|+++ |+.++.+.++ ++|
T Consensus       268 ~~~~~~~~~~~~~~~~~~~a~~~al~-----------~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~-~~~  334 (401)
T 2bwn_A          268 RSYAPGFIFSTSLPPAIAAGAQASIA-----------FLKTAEGQKLRDAQQMHAKVLKMRLKAL-GMPIIDHGSH-IVP  334 (401)
T ss_dssp             HHHCHHHHTSBCCCHHHHHHHHHHHH-----------HHTSHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCSSS-CEE
T ss_pred             HHhCcCceecCCCCHHHHHHHHHHHH-----------HHHhcccHHHHHHHHHHHHHHHHHHHHC-CCcccCCCCC-eEE
Confidence            65432   223345577777666663           1111  3567788899999999999988 8888888777 566


Q ss_pred             cccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 009517          452 PRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~~  527 (533)
                      +.++  .+.          +...++..+++++||.+.|+..|+.+.+.+++||+++  .+++++++++++|+++++++
T Consensus       335 ~~~~--~~~----------~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~~  400 (401)
T 2bwn_A          335 VVIG--DPV----------HTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWARC  400 (401)
T ss_dssp             EECC--CHH----------HHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC---
T ss_pred             EEeC--ChH----------HHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Confidence            5443  211          1234455555678999999988875445569999997  68899999999999887653

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=100.00  E-value=1.2e-31  Score=277.01  Aligned_cols=321  Identities=12%  Similarity=0.044  Sum_probs=234.5

Q ss_pred             CHHHHHHHHHHHhcCCC---CCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCe
Q 009517          141 SADSIERAWQILDQIPG---RATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDG  217 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~---~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~  217 (533)
                      ++.+++++.+++.+...   .....|+......+|+++++++++      .  +..+++++|++++..++++++ ++||.
T Consensus        75 ~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g------~--~~~i~~~sGt~a~~~~l~~~~-~~gd~  145 (409)
T 3kki_A           75 HPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTG------F--DECLLSQSGWNANVGLLQTIC-QPNTN  145 (409)
T ss_dssp             CHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHT------C--SEEEEESCHHHHHHHHHHHHC-CTTCE
T ss_pred             CHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhC------C--CeEEEecchHHHHHHHHHHhc-CCCCE
Confidence            68999999998876321   011223333446678888888764      2  234555666799999999998 89999


Q ss_pred             EEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHH
Q 009517          218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD  297 (533)
Q Consensus       218 Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~  297 (533)
                      |+++.|+|..+...+...|++++.++.       .|+++|++++++.     ++++|++++|+||||.+++   +++|++
T Consensus       146 Vl~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~le~~l~~~-----~~~~vi~~~~~nptG~~~~---l~~l~~  210 (409)
T 3kki_A          146 VYIDFFAHMSLWEGARYANAQAHPFMH-------NNCDHLRMLIQRH-----GPGIIVVDSIYSTLGTIAP---LAELVN  210 (409)
T ss_dssp             EEEETTSCHHHHHHHHHTTCEEEEECT-------TCHHHHHHHHHHH-----CSCEEEEESBCTTTCCBCC---HHHHHH
T ss_pred             EEECCCcCHHHHHHHHHcCCeEEEecC-------CCHHHHHHHHHhc-----CCeEEEECCCCCCCCCcCC---HHHHHH
Confidence            999999999999999999999988764       5899999999874     5799999999999999999   999999


Q ss_pred             HHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHH
Q 009517          298 FCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY  377 (533)
Q Consensus       298 l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~  377 (533)
                      +|++||++||+||+|.++.++...  ..+... .++   .++ ..|++.||||++ +++   .||+++   ++++++.+.
T Consensus       211 la~~~~~~li~De~~~~g~~g~~g--~~~~~~-~~~---~~~-~di~~~s~sK~~-~~~---gg~v~~---~~~~~~~~~  276 (409)
T 3kki_A          211 ISKEFGCALLVDESHSLGTHGPNG--AGLLAE-LGL---TRE-VHFMTASLAKTF-AYR---AGAIWC---NNEVNRCVP  276 (409)
T ss_dssp             HHHHHTCEEEEECTTTTTTSSGGG--CCHHHH-HTC---GGG-CSEEEEESSSTT-CSS---CEEEEE---SSSGGGTHH
T ss_pred             HHHHcCCEEEEECCccccccCCCC--Ccchhh-cCC---CCC-CCEEEeecchhh-CCC---ceEEEE---CHHHHHHHH
Confidence            999999999999999986553211  111111 111   111 237899999999 544   499988   888887776


Q ss_pred             Hhhh---ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEeccc
Q 009517          378 KVAS---VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRI  454 (533)
Q Consensus       378 ~~~~---~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~  454 (533)
                      ....   .+...++..++++.++++           ..++.+.++++++++++++.+.|+++ |+.+. + ++.++|+.+
T Consensus       277 ~~~~~~~~~~~~~~~~~aa~~aal~-----------~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~-~~~~~~~~~  342 (409)
T 3kki_A          277 FISYPAIFSSTLLPYEAAGLETTLE-----------IIESADNRRQHLDRMARKLRIGLSQL-GLTIR-S-ESQIIGLET  342 (409)
T ss_dssp             HHCHHHHHSBCCCHHHHHHHHHHHH-----------HHHHCHHHHHHHHHHHHHHHHHHHTT-TCCCC-C-SSSEEEEEE
T ss_pred             HhCcCccccCCCcHHHHHHHHHHHH-----------HHhcCHHHHHHHHHHHHHHHHHHHHc-CCccC-C-CCCEEEEEe
Confidence            5432   223456666666666663           22333577888999999999999998 77755 3 556677655


Q ss_pred             CCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHHHH
Q 009517          455 QLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~  526 (533)
                      +.+.            +...++..++ ++||.+.|+..+....+.+++||++.  .++++|++++++|+++++.
T Consensus       343 ~~~~------------~~~~~~~~L~-~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~  403 (409)
T 3kki_A          343 GDER------------NTEKVRDYLE-SNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNY  403 (409)
T ss_dssp             ESHH------------HHHHHHHHHH-HTTEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCHH------------HHHHHHHHHH-HCCceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHHHHHHHHHHhc
Confidence            4221            1234454554 56999998665544456679999996  6889999999999998875

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=100.00  E-value=1.8e-32  Score=285.23  Aligned_cols=348  Identities=14%  Similarity=0.082  Sum_probs=217.4

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc-------C
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-------S  213 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-------~  213 (533)
                      |+++++++.+++.+.     ..|.+..+..++++++++++.+.++  .+.++|++|+|+++|+..+++.++.       .
T Consensus        47 ~p~v~~a~~~~~~~~-----~~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~  119 (430)
T 3i4j_A           47 RAEVGERMAAQAARL-----PFVHGSQFSSDVLEEYAGRLARFVG--LPTFRFWAVSGGSEATESAVKLARQYHVERGEP  119 (430)
T ss_dssp             CHHHHHHHHHHHHHC-----CCCCTTTCEEHHHHHHHHHHHHHTT--CTTCEEEEESSHHHHHHHHHHHHHHHHHHTTCT
T ss_pred             CHHHHHHHHHHHHhc-----ccccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCcHHHHHHHHHHHHHHHHHhcCCC
Confidence            789999999988762     3344445566777888888877766  5567999999999999999998862       1


Q ss_pred             CCCeEEEcCCcCcchHHHHHHhCCe---------------EEEEecCCCC-CCCCCHHHHHHHHHHHHhcC-CCeeEEEE
Q 009517          214 ENDGILCPIPQYPLYSASIALHGGT---------------LVPYYLDEAT-GWGLETSEVKKQLEAAKAKG-ITVRALVV  276 (533)
Q Consensus       214 ~gd~Vlv~~p~~~~~~~~~~~~g~~---------------~~~v~~~~~~-~~~ld~~~l~~~i~~~~~~g-~~~~~iil  276 (533)
                      ++++|++.+|+|+++...+...+..               +..++..... ....|+++|+++++..   + .++++|++
T Consensus       120 ~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~---~~~~~~~vi~  196 (430)
T 3i4j_A          120 GRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLERE---GPETVAAFMA  196 (430)
T ss_dssp             TCCEEEEETTC-------------------------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHH---CGGGEEEEEE
T ss_pred             CCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhc---CCCCEEEEEE
Confidence            3689999999999988765555432               1122221100 0113568999999753   1 15666665


Q ss_pred             eCCCC-CCcc-CCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCC
Q 009517          277 INPGN-PTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYG  354 (533)
Q Consensus       277 ~~p~N-PtG~-~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~g  354 (533)
                      +.++| ++|. +++++++++|+++|++||+++|+||+|.+|.+.|.  ..++..+ +++   .++     +.+|||++ +
T Consensus       197 ~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~--~~~~~~~-~~~---~~d-----i~t~sK~l-~  264 (430)
T 3i4j_A          197 EPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGS--PLALSRW-SGV---TPD-----IAVLGKGL-A  264 (430)
T ss_dssp             CSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSGGGGT-TTC---CCS-----EEEECGGG-T
T ss_pred             cCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccc--hhhhhhh-cCC---CCc-----EEEEcccc-c
Confidence            55577 8887 77888899999999999999999999999876553  2221111 022   355     44799999 5


Q ss_pred             CCC-CeeEEEEEecCCHHHHHHHHHh-----hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 009517          355 ECG-KRGGYMEVTGFSAEVREQIYKV-----ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKT  428 (533)
Q Consensus       355 l~G-~riG~v~~~~~~~~~~~~l~~~-----~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (533)
                       .| +|+||+++   ++++++.+.+.     ...++++++++|+++.++|+...        ..+..+++++..+..++.
T Consensus       265 -~G~~r~G~~~~---~~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~--------~~~~~~~~~~~~~~~~~~  332 (430)
T 3i4j_A          265 -AGYAPLAGLLA---APQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVE--------REDLTGAAKERGAQLLAG  332 (430)
T ss_dssp             -TTSSCCEEEEE---CHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHH--------HTTHHHHHHHHHHHHHHH
T ss_pred             -CCccccEEEEE---CHHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHH--------cccHHHHHHHHHHHHHHH
Confidence             49 99999998   99999999873     33678899999999988874110        011122333333333444


Q ss_pred             HHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec-
Q 009517          429 LEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-  507 (533)
Q Consensus       429 l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-  507 (533)
                      |.+.+.++|++..+++.|.|+.+ .+....  .... .........++.. |.++||.+.|+..+....+.+++||+++ 
T Consensus       333 l~~~~~~~~~~~~~~~~g~~~~~-~~~~~~--~~~~-~~~~~~~~~~~~~-l~~~Gv~v~~~~~~~~~~~~~~iRi~~~~  407 (430)
T 3i4j_A          333 LQALQARFPQMMQVRGTGLLLGV-VLGDLA--TGQA-FETPGIASRIGAA-ALKRGLITYPGSGAEPNGRGDHLLLGPPL  407 (430)
T ss_dssp             HHHHHHHCTTEEEEEEETTEEEE-EEC---------------CHHHHHHH-HHHTTEECC-----------CEEEECCCT
T ss_pred             HHHHHHhCCCeEEEEEEEEEEEE-Eecccc--ccCC-CccHHHHHHHHHH-HHhCCCEEEecccccCCCCCCEEEEECCC
Confidence            44444456778888888775543 332110  0000 0000012334444 4578999999843332334558999996 


Q ss_pred             -CCcCcHHHHHHHHHHHHHHH
Q 009517          508 -PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       508 -~~~e~i~~~~~~l~~~l~~~  527 (533)
                       .+++++++++++|+++++++
T Consensus       408 ~~t~e~i~~~l~~l~~~l~~~  428 (430)
T 3i4j_A          408 SITAAEVDGLLALLAGALEDV  428 (430)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHh
Confidence             78899999999999998865

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=100.00  E-value=2.1e-32  Score=280.82  Aligned_cols=320  Identities=10%  Similarity=0.040  Sum_probs=235.3

Q ss_pred             CCHHHHHHHHHHHhcCCCCCccccC--CCcccHHHHHHHHHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHhccCCCC
Q 009517          140 FSADSIERAWQILDQIPGRATGAYS--HSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSEND  216 (533)
Q Consensus       140 ~p~~v~~~~~~~~~~~~~~~~~~Y~--~~~G~~~lr~aia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd  216 (533)
                      +|+.+++++.+.+..       .|.  +..+..+++++++++++      .+++ +|++|+|+++|+..+++.++ ++||
T Consensus        30 ~~~~v~~a~~~~~~~-------~~~~~~~~~~~~l~~~la~~~g------~~~~~~i~~~~g~t~a~~~~~~~~~-~~gd   95 (393)
T 2huf_A           30 APQRVLDAMSRPILG-------HLHPETLKIMDDIKEGVRYLFQ------TNNIATFCLSASGHGGMEATLCNLL-EDGD   95 (393)
T ss_dssp             CCHHHHHHTTSCCCC-------TTSHHHHHHHHHHHHHHHHHHT------CCCSEEEEESSCHHHHHHHHHHHHC-CTTC
T ss_pred             CCHHHHHHHHhhhcc-------CCCHHHHHHHHHHHHHHHHHhC------CCCCcEEEEcCcHHHHHHHHHHHHh-CCCC
Confidence            378888776554432       232  23457788888888874      4454 89999999999999999998 7999


Q ss_pred             eEEEcCCcCcchH--HHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHH
Q 009517          217 GILCPIPQYPLYS--ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRA  294 (533)
Q Consensus       217 ~Vlv~~p~~~~~~--~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~  294 (533)
                      +|++++|+|+++.  ..++..|.+++.+++++  ++.+|++++++++++.     ++++|++++|+||||.+++   +++
T Consensus        96 ~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~  165 (393)
T 2huf_A           96 VILIGHTGHWGDRSADMATRYGADVRVVKSKV--GQSLSLDEIRDALLIH-----KPSVLFLTQGDSSTGVLQG---LEG  165 (393)
T ss_dssp             EEEEEESSHHHHHHHHHHHHTTCEEEEEECCT--TCCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTT
T ss_pred             EEEEECCCcchHHHHHHHHHcCCeeEEEeCCC--CCCCCHHHHHHHHhcc-----CCcEEEEEccCCCccccCC---HHH
Confidence            9999999998843  34566899999999875  3578999999999864     6899999999999999999   899


Q ss_pred             HHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHH
Q 009517          295 IVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVRE  374 (533)
Q Consensus       295 i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~  374 (533)
                      |+++|++||+++|+||++..    +..+ ..+    ..+   ..   .+++.|+||+++|++|+  ||+++   ++++++
T Consensus       166 i~~~~~~~~~~li~D~a~~~----~~~~-~~~----~~~---~~---d~~~~s~sK~l~g~~G~--G~~~~---~~~~~~  225 (393)
T 2huf_A          166 VGALCHQHNCLLIVDTVASL----GGAP-MFM----DRW---EI---DAMYTGSQKVLGAPPGI--TPVSF---SHRAVE  225 (393)
T ss_dssp             HHHHHHHTTCEEEEECTTTB----TTBC-CCT----TTT---TC---SEEECCSSSTTCCCSSC--EEEEE---CHHHHH
T ss_pred             HHHHHHHcCCEEEEEccccc----CCCC-cch----hhc---Cc---cEEEECCCcccccCCCe--EEEEE---CHHHHH
Confidence            99999999999999999763    2111 111    111   12   37789999987577787  99998   899998


Q ss_pred             HHHHhh----h--------------------ccccCChHHHHHHHHHcCCCCCCChhHHHHHH-HHHHHHHHHHHHHHHH
Q 009517          375 QIYKVA----S--------------------VNLCSNISGQILASLVMSPPKVGDESYESYCA-ERDGILSSLARRAKTL  429 (533)
Q Consensus       375 ~l~~~~----~--------------------~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l  429 (533)
                      .+.+..    .                    ...+++..++.++.++++          ...+ .+++++++++++++++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~----------~~~~~~~~~~~~~~~~~~~~l  295 (393)
T 2huf_A          226 RYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIA----------MACEEGLPALIARHEDCAKRL  295 (393)
T ss_dssp             HHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHH----------HHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHH----------HHHHhCHHHHHHHHHHHHHHH
Confidence            887541    0                    012445666666655653          1112 2567788899999999


Q ss_pred             HHHHhcCCCceEecCC---ceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEe
Q 009517          430 EDAFNSLEGITCNKAE---GAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTI  506 (533)
Q Consensus       430 ~~~L~~~~g~~~~~~~---gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~  506 (533)
                      .+.|+++ |+.+..+.   +++++++.++  .+         . +...++..+++++||.+.||..|..   .+++||++
T Consensus       296 ~~~L~~~-g~~~~~~~~~~~~~~~~~~~~--~~---------~-~~~~~~~~L~~~~gi~v~~g~~~~~---~~~~Ri~~  359 (393)
T 2huf_A          296 YRGLQDA-GFELYADPKDRLSTVTTIKVP--QG---------V-DWLKAAQYAMKTYLVEISGGLGPTA---GQVFRIGL  359 (393)
T ss_dssp             HHHHHHT-TCCBSSCGGGBCTTEEEEECC--TT---------C-CHHHHHHHHHHHHCEECBCCCGGGT---TTEEEEEC
T ss_pred             HHHHHHc-CCeeccCccccCCcEEEEEcC--CC---------C-CHHHHHHHHHHhCCEEEecCccccc---CCEEEEEc
Confidence            9999998 88877663   3445665443  11         1 2345555666667999999987642   23999999


Q ss_pred             -c--CCcCcHHHHHHHHHHHHHHHHH
Q 009517          507 -L--PQEDKIPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       507 -~--~~~e~i~~~~~~l~~~l~~~~~  529 (533)
                       +  .+++++++++++|+++++++..
T Consensus       360 ~~~~~~~e~i~~~~~~l~~~~~~~~~  385 (393)
T 2huf_A          360 MGQNATTERVDRVLQVFQEAVAAVKP  385 (393)
T ss_dssp             CGGGCSHHHHHHHHHHHHHHHHHHCC
T ss_pred             ccCcCCHHHHHHHHHHHHHHHHHcCC
Confidence             6  3677899999999999987643

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=100.00  E-value=2.5e-33  Score=285.42  Aligned_cols=320  Identities=12%  Similarity=0.074  Sum_probs=233.0

Q ss_pred             CHHHHHHHHHHHhcCCC-----CCccccCCCcccHHHHHH-HHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCC
Q 009517          141 SADSIERAWQILDQIPG-----RATGAYSHSQGIKGLRDT-IAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSE  214 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~-----~~~~~Y~~~~G~~~lr~a-ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~  214 (533)
                      |+.+++++.+.+.....     .....|.+..+..+++++ ++++++      .+  +|++|+|+++|+..+++.++ ++
T Consensus        22 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~------~~--~v~~~~g~t~a~~~~~~~~~-~~   92 (371)
T 2e7j_A           22 TEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLG------CD--VARVTNGAREAKFAVMHSLA-KK   92 (371)
T ss_dssp             CHHHHHHHHHC--------------------CCHHHHHHTHHHHHTT------SS--EEEEESSHHHHHHHHHHHHC-CT
T ss_pred             CHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcC------CC--EEEEeCChHHHHHHHHHHHh-CC
Confidence            78889888887764210     012345567789999999 999974      22  89999999999999999998 79


Q ss_pred             CCeEEEcCCcCcchHHHHHHhCCeEEEEe--cCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHH
Q 009517          215 NDGILCPIPQYPLYSASIALHGGTLVPYY--LDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQ  292 (533)
Q Consensus       215 gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~--~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l  292 (533)
                      ||+|++++|+|+++...++..|++++.++  .++  ++.+|+++|++++++.... +++++|++++|+||||.+++   +
T Consensus        93 gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~--~~~~d~~~l~~~l~~~~~~-~~~~~v~~~~~~nptG~~~~---~  166 (371)
T 2e7j_A           93 DAWVVMDENCHYSSYVAAERAGLNIALVPKTDYP--DYAITPENFAQTIEETKKR-GEVVLALITYPDGNYGNLPD---V  166 (371)
T ss_dssp             TCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTT--TCCCCHHHHHHHHHHHTTT-SCEEEEEEESSCTTTCCCCC---H
T ss_pred             CCEEEEccCcchHHHHHHHHcCCeEEEeecccCC--CCCcCHHHHHHHHHhhccc-CCeEEEEEECCCCCCcccCC---H
Confidence            99999999999999999999999999999  653  5789999999999853111 37899999999999999999   7


Q ss_pred             HHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHH
Q 009517          293 RAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEV  372 (533)
Q Consensus       293 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~  372 (533)
                      ++|+++|++||+++|+||+|..+.+.     .++..    +   ..+   +++.|+||++ +. |.|+||+++   ++++
T Consensus       167 ~~i~~~~~~~~~~li~D~a~~~~~~~-----~~~~~----~---~~d---i~~~s~sK~~-~~-~~~~G~~~~---~~~~  226 (371)
T 2e7j_A          167 KKIAKVCSEYDVPLLVNGAYAIGRMP-----VSLKE----I---GAD---FIVGSGHKSM-AA-SGPIGVMGM---KEEW  226 (371)
T ss_dssp             HHHHHHHHTTTCCEEEECTTTBTTBC-----CCHHH----H---TCS---EEEEEHHHHS-SC-CSSCEEEEE---CTTT
T ss_pred             HHHHHHHHHcCCeEEEECccccCCCC-----CChhh----c---CCC---EEEecCCcCC-CC-CCCcEEEEE---echh
Confidence            99999999999999999999874431     22222    2   244   7899999998 43 469999998   7777


Q ss_pred             HHH-HHHhhh---c-----cccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCCceE
Q 009517          373 REQ-IYKVAS---V-----NLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSL--ARRAKTLEDAFNSLEGITC  441 (533)
Q Consensus       373 ~~~-l~~~~~---~-----~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~L~~~~g~~~  441 (533)
                      ++. +.....   .     .+++++..+.++..+++           +...  .+.+++  +++++++.+.|+++ |+.+
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~-----------~~~~--~~~~~~~~~~~~~~l~~~L~~~-~~~~  292 (371)
T 2e7j_A          227 AEIVLRRSEKYKNKEVELLGCTARGATIITLMASFP-----------HVRE--RIKRWDEEVEKARRFAAEMEKL-GIKQ  292 (371)
T ss_dssp             TTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHH-----------HHHH--HGGGHHHHHHHHHHHHHHHHHT-TCEE
T ss_pred             hhhhccccccCcccccccccCCcCHHHHHHHHHHHH-----------HHHH--HHHHHHHHHHHHHHHHHHHHHc-CcEE
Confidence            666 554332   1     34456666666655552           1121  456667  88889999999998 9988


Q ss_pred             ecCC--ceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCC---CCCCceEE-EEec---CCcCc
Q 009517          442 NKAE--GAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ---VPGTWHFR-CTIL---PQEDK  512 (533)
Q Consensus       442 ~~~~--gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~---~~g~~~iR-is~~---~~~e~  512 (533)
                      ..+.  .+.++|++++  .             ...+. +.|.++||.+.| ..|..   ....++|| |+++   .++++
T Consensus       293 ~~~~~~~~~~~~~~~~--~-------------~~~~~-~~l~~~gi~~~~-~~~~~~~~g~~~~~iRii~~~~~~~~~~~  355 (371)
T 2e7j_A          293 LGDNPHNHDLMFFHAE--V-------------LYEIS-KKAKGGRFFLYR-ELKSRKIHGIKPGLTRYFKLSTYGLSDEE  355 (371)
T ss_dssp             ESSSSCCSSEEEEECH--H-------------HHHHH-HHSSSGGGHHHH-HHHHTTEECSCTTCCSEEEEECTTCCHHH
T ss_pred             ecCCCccCceEEEECC--C-------------HHHHH-HHHHHCCEEEEe-ccccccccCCCCCceEEEEeeccCCCHHH
Confidence            8763  2346775543  1             23333 445588999988 44421   11134899 9997   68999


Q ss_pred             HHHHHHHHHHHHHH
Q 009517          513 IPAIVTRLTDFHKN  526 (533)
Q Consensus       513 i~~~~~~l~~~l~~  526 (533)
                      +++++++|++++++
T Consensus       356 i~~~~~~l~~~~~~  369 (371)
T 2e7j_A          356 VDYVLNAFKEIIEK  369 (371)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998865

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=100.00  E-value=2.1e-31  Score=279.17  Aligned_cols=375  Identities=14%  Similarity=0.099  Sum_probs=257.4

Q ss_pred             ccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCC--cCCCCCCchHHHHHHhhcCCCCCCCcccccCCCC
Q 009517           64 KVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNP--QSLGQQPITFFREVLALCDHPSILDRSETQGLFS  141 (533)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p--~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p  141 (533)
                      ++..+.++.+..+..++.++...|.+         +++++.|.+  ++                      ..+.++..++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~g~~---------~~~l~~~~~ylD~----------------------~~~~~~~~~~   57 (456)
T 2ez2_A            9 RIKSVETVSMIPRDERLKKMQEAGYN---------TFLLNSKDIYIDL----------------------LTDSGTNAMS   57 (456)
T ss_dssp             CCCCCCCCCCCCHHHHHHHHHHTTTC---------GGGSCGGGCSEEC----------------------SCSSSCCCCC
T ss_pred             eeeeecccCCCCHHHHHHHHHHCCCC---------cccCCcccceeee----------------------ccccCCccCC
Confidence            45567777777788888888887776         889998887  32                      2222222335


Q ss_pred             HHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEc
Q 009517          142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCP  221 (533)
Q Consensus       142 ~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~  221 (533)
                      +.+++++.    .    ....|.+..|..+||++++++++        .+++++|+|+++|+..+++.++ ++||  +++
T Consensus        58 ~~~~~a~~----~----~~~~y~~~~~~~~l~~~la~~~~--------~~~~~~~~~gt~a~~~al~~l~-~~gd--i~~  118 (456)
T 2ez2_A           58 DKQWAGMM----M----GDEAYAGSENFYHLERTVQELFG--------FKHIVPTHQGRGAENLLSQLAI-KPGQ--YVA  118 (456)
T ss_dssp             HHHHHHHT----T----CCCCSSSCHHHHHHHHHHHHHHC--------CSEEEEESSHHHHHHHHHHHHC-CTTC--EEE
T ss_pred             HHHHHHhh----c----chhhcccChhHHHHHHHHHHHhC--------CCcEEEeCCcHHHHHHHHHHhC-CCCC--Eec
Confidence            55555543    2    13468888889999999999984        3479999999999999999997 8999  788


Q ss_pred             CCcC-cchHHHHHHhCCeEEEEecCCC----C----CCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCC-CCccCCCHHH
Q 009517          222 IPQY-PLYSASIALHGGTLVPYYLDEA----T----GWGLETSEVKKQLEAAKAKGITVRALVVINPGN-PTGQVLAEEN  291 (533)
Q Consensus       222 ~p~~-~~~~~~~~~~g~~~~~v~~~~~----~----~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~N-PtG~~~s~~~  291 (533)
                      .|+| ..+...+...|++++.+++++.    .    +|.+|+++|++++++..  ...+++|++++|+| |||.+++.++
T Consensus       119 ~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t--~~~~~~v~l~~p~n~ptG~~~~~~~  196 (456)
T 2ez2_A          119 GNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKG--AENIAYICLAVTVNLAGGQPVSMAN  196 (456)
T ss_dssp             ESSCCHHHHHHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHC--GGGEEEEEEESSBTTTTSBCCCHHH
T ss_pred             cccccchhHHHHHHcCCEEEEecccccccccccccccCCCCHHHHHHHHHhcc--ccceeEEEEeccCCCCCCccCCHHH
Confidence            9999 7778889999999999988732    1    36899999999998730  01248999999998 9999999999


Q ss_pred             HHHHHHHHHHcCCEEEEcccccc----------ccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeE
Q 009517          292 QRAIVDFCKKEGLVLLADEVYQE----------NVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGG  361 (533)
Q Consensus       292 l~~i~~l~~~~~~~lI~De~y~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG  361 (533)
                      +++|+++|++||+++|+||+|..          +.|.+.    ++..+...++. ..|  ++++ |++|.+ + +| ++|
T Consensus       197 l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~----~~~~~~~~~~~-~~d--~~~~-S~kk~~-~-~~-~gG  265 (456)
T 2ez2_A          197 MRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENK----SIAEIVHEMFS-YAD--GCTM-SGKKDC-L-VN-IGG  265 (456)
T ss_dssp             HHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTS----CHHHHHHHHHT-TCS--EEEE-ETTTTT-C-CS-SCE
T ss_pred             HHHHHHHHHHcCCeEEEEccccccccccccccccccCCc----chhhhhhhhcc-cCC--EEEE-eCcccC-C-CC-cee
Confidence            99999999999999999999986          445442    11111101000 234  3444 778854 4 67 789


Q ss_pred             EEEEecCCHHHHHHHHHhhhc------cccCChHHHHH-HHHHcCCCCCCChhHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 009517          362 YMEVTGFSAEVREQIYKVASV------NLCSNISGQIL-ASLVMSPPKVGDESYESYCAER-DGILSSLARRAKTLEDAF  433 (533)
Q Consensus       362 ~v~~~~~~~~~~~~l~~~~~~------~~~~~~~~q~a-~~~~L~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~L  433 (533)
                      |+++  .++++++.+......      ..+.+.....+ +...+              +.+ +...++.+++.+++.+.|
T Consensus       266 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~--------------~~~~~~~~~~~~~~~~~l~~~L  329 (456)
T 2ez2_A          266 FLCM--NDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLR--------------EAMQYEYIEHRVKQVRYLGDKL  329 (456)
T ss_dssp             EEEE--SCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHH--------------HHTCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEE--CCHHHHHHHHHHHhhccCcccccCcchhHHHHHHHHHH--------------HHhHHHHHHHHHHHHHHHHHHH
Confidence            9986  257888887665431      11223232222 22222              111 233344455567788888


Q ss_pred             hcCCCceEecCCceeEEecccCC-CHHHHHHHHhcCCCC----hHHHHHHHHHccceEEEc-CCCCC-------C--CCC
Q 009517          434 NSLEGITCNKAEGAMYLFPRIQL-PEKAIKAAEAEKTVP----DAFYCRRLLNATGIVLVP-GSGFG-------Q--VPG  498 (533)
Q Consensus       434 ~~~~g~~~~~~~gg~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~ll~~~gV~v~p-g~~f~-------~--~~g  498 (533)
                      ++. |+.++.|.+++++|+++.. +.         +.+.    ...++..+++++||.+.+ |..|.       .  ..+
T Consensus       330 ~~~-g~~~~~p~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~  399 (456)
T 2ez2_A          330 KAA-GVPIVEPVGGHAVFLDARRFCE---------HLTQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPK  399 (456)
T ss_dssp             HHT-TCCBCSSCCSSEEEEEHHHHTT---------TSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCS
T ss_pred             hcC-CCccccCCCceEEEEEhHHhcC---------CCChhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCC
Confidence            876 8888888889999976530 00         0111    112244555788999876 54331       0  122


Q ss_pred             CceEEEEec---CCcCcHHHHHHHHHHHHHHH
Q 009517          499 TWHFRCTIL---PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       499 ~~~iRis~~---~~~e~i~~~~~~l~~~l~~~  527 (533)
                      .++|||++.   .++++|++++++|++++++.
T Consensus       400 ~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~~  431 (456)
T 2ez2_A          400 LETVRLTIPRRVYTYAHMDVVADGIIKLYQHK  431 (456)
T ss_dssp             CCEEEEECCTTTCCHHHHHHHHHHHHHHHHTG
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhh
Confidence            358999997   68999999999999988764

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=100.00  E-value=9.6e-32  Score=275.87  Aligned_cols=321  Identities=14%  Similarity=0.064  Sum_probs=233.9

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      |+.+++++.+.+..     ...|....+..++|++++++++      .++++|++|+|+++++..+++.++ ++||+|++
T Consensus        21 ~~~v~~a~~~~~~~-----~~~~~~~~~~~~l~~~la~~~g------~~~~~v~~t~g~t~a~~~~~~~~~-~~gd~Vl~   88 (392)
T 2z9v_A           21 YPEVLRGLGRTVLY-----DYDPAFQLLYEKVVDKAQKAMR------LSNKPVILHGEPVLGLEAAAASLI-SPDDVVLN   88 (392)
T ss_dssp             CHHHHHHTTSCCCC-----TTSHHHHHHHHHHHHHHHHHTT------CSSCCEEESSCTHHHHHHHHHHHC-CTTCCEEE
T ss_pred             CHHHHHHHhccccc-----cccHHHHHHHHHHHHHHHHHhC------CCCCEEEEeCCchHHHHHHHHHhc-CCCCEEEE
Confidence            78888777655432     1122333456788888888864      457899999999999999999997 79999999


Q ss_pred             cCCcCcch--HHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHH
Q 009517          221 PIPQYPLY--SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF  298 (533)
Q Consensus       221 ~~p~~~~~--~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l  298 (533)
                      +.|+|+++  ...++..|.+++.++++++  +.+|+++|++++++    .+++++|++++|+||||.+++   +++|+++
T Consensus        89 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~----~~~~~~v~~~~~~nptG~~~~---l~~i~~l  159 (392)
T 2z9v_A           89 LASGVYGKGFGYWAKRYSPHLLEIEVPYN--EAIDPQAVADMLKA----HPEITVVSVCHHDTPSGTINP---IDAIGAL  159 (392)
T ss_dssp             EESSHHHHHHHHHHHHHCSCEEEEECCTT--SCCCHHHHHHHHHH----CTTCCEEEEESEEGGGTEECC---HHHHHHH
T ss_pred             ecCCcccHHHHHHHHHcCCceEEeeCCCC--CCCCHHHHHHHHhc----CCCCcEEEEeccCCCCceecc---HHHHHHH
Confidence            99999875  3445567999999998753  46899999999964    126899999999999999998   8899999


Q ss_pred             HHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHH
Q 009517          299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYK  378 (533)
Q Consensus       299 ~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~  378 (533)
                      |++||+++|+||+|..    +..+ .++    ..+   ..+   +++.|+||++.|++|+  ||+++   ++++++.+..
T Consensus       160 ~~~~~~~li~D~a~~~----g~~~-~~~----~~~---~~d---~~~~s~sK~~~~~~g~--G~l~~---~~~~~~~l~~  219 (392)
T 2z9v_A          160 VSAHGAYLIVDAVSSF----GGMK-THP----EDC---KAD---IYVTGPNKCLGAPPGL--TMMGV---SERAWAKMKA  219 (392)
T ss_dssp             HHHTTCEEEEECTTTB----TTBS-CCG----GGG---TCS---EEEECSSSTTCCCSCC--EEEEE---CHHHHHHHHT
T ss_pred             HHHcCCeEEEEccccc----CCcc-ccc----ccc---cce---EEEecCcccccCCCce--eEEEE---CHHHHHHhhh
Confidence            9999999999999973    2211 111    112   233   7789999977555554  99998   8898888764


Q ss_pred             hh--------------------h-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHH-HHHHHHHHHHHHHHHHHHHhcC
Q 009517          379 VA--------------------S-VNLCSNISGQILASLVMSPPKVGDESYESYCAE-RDGILSSLARRAKTLEDAFNSL  436 (533)
Q Consensus       379 ~~--------------------~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~  436 (533)
                      ..                    . ..++++...+.++..+++          .+.++ +++++++++++++++.+.|+++
T Consensus       220 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~----------~~~~~g~~~~~~~~~~~~~~l~~~L~~~  289 (392)
T 2z9v_A          220 NPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALD----------LYLNEGPEAVWARHALTAKAMRAGVTAM  289 (392)
T ss_dssp             CTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHH----------HHHHHCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHH----------HHHhccHHHHHHHHHHHHHHHHHHHHHc
Confidence            21                    1 223455666666555553          12233 5678888999999999999988


Q ss_pred             CCceEecCC----ceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEe-c--CC
Q 009517          437 EGITCNKAE----GAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTI-L--PQ  509 (533)
Q Consensus       437 ~g~~~~~~~----gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~-~--~~  509 (533)
                       |+.+..|.    .+.++|+.++  .+         . +...++..+++++||.+.||..+.   +.+++||++ +  .+
T Consensus       290 -g~~~~~~~~~~~~~~~~~~~~~--~~---------~-~~~~l~~~L~~~~gi~v~~g~~~~---~~~~lRi~~~~~~~~  353 (392)
T 2z9v_A          290 -GLSVWAASDSIASPTTTAVRTP--DG---------V-DEKALRQAARARYGVVFSSGRGET---LGKLTRIGHMGPTAQ  353 (392)
T ss_dssp             -TCCBSSSSGGGBCTTEEEEECC--TT---------C-CHHHHHHHHHHHHCEECEECCGGG---TTTEEEEECCGGGCS
T ss_pred             -CCeeccCCccccCCceEEEECC--CC---------C-CHHHHHHHHHhcCCEEEecCCCCC---CCCeEEEeCcccccC
Confidence             88877633    3455665442  11         1 234455555544599999988654   233899995 4  78


Q ss_pred             cCcHHHHHHHHHHHHHHHH
Q 009517          510 EDKIPAIVTRLTDFHKNFM  528 (533)
Q Consensus       510 ~e~i~~~~~~l~~~l~~~~  528 (533)
                      ++++++++++|+++++++.
T Consensus       354 ~~~i~~~~~~l~~~~~~~~  372 (392)
T 2z9v_A          354 PIYAIAALTALGGAMNAAG  372 (392)
T ss_dssp             HHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcC
Confidence            9999999999999987653

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=100.00  E-value=2.7e-32  Score=280.34  Aligned_cols=325  Identities=10%  Similarity=0.053  Sum_probs=239.5

Q ss_pred             cCCCCHHHHHHHHHHHhcCCCCCccccCCC--cccHHHHHHHHHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHhccC
Q 009517          137 QGLFSADSIERAWQILDQIPGRATGAYSHS--QGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRS  213 (533)
Q Consensus       137 ~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~--~G~~~lr~aia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~  213 (533)
                      |..+++.+++++.+.+.       ..|.+.  ....++|++++++++      .+++ +|++|+|+++++..+++.++ +
T Consensus        26 p~~~~~~v~~a~~~~~~-------~~~~~~~~~~~~~l~~~la~~~~------~~~~~~v~~~~g~t~al~~~~~~~~-~   91 (396)
T 2ch1_A           26 PSNCSKRVLTAMTNTVL-------SNFHAELFRTMDEVKDGLRYIFQ------TENRATMCVSGSAHAGMEAMLSNLL-E   91 (396)
T ss_dssp             SCCCCHHHHHHTTSCCC-------CTTCHHHHHHHHHHHHHHHHHHT------CCCSCEEEESSCHHHHHHHHHHHHC-C
T ss_pred             CCCCCHHHHHHhccccc-------cCCChhHHHHHHHHHHHHHHHhC------CCCCcEEEECCcHHHHHHHHHHHhc-C
Confidence            45557777776644332       124332  237889999999985      4566 89999999999999999998 8


Q ss_pred             CCCeEEEcCCcCcchH--HHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHH
Q 009517          214 ENDGILCPIPQYPLYS--ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEEN  291 (533)
Q Consensus       214 ~gd~Vlv~~p~~~~~~--~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~  291 (533)
                      +||+|++++|+|+.+.  ..++..|++++.++++.  ++.+|++++++++++.     ++++|++++|+||||.+++   
T Consensus        92 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~---  161 (396)
T 2ch1_A           92 EGDRVLIAVNGIWAERAVEMSERYGADVRTIEGPP--DRPFSLETLARAIELH-----QPKCLFLTHGDSSSGLLQP---  161 (396)
T ss_dssp             TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT--TSCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---
T ss_pred             CCCeEEEEcCCcccHHHHHHHHHcCCceEEecCCC--CCCCCHHHHHHHHHhC-----CCCEEEEECCCCCCceecC---
Confidence            9999999999999985  47788899999999864  5679999999999874     6899999999999999999   


Q ss_pred             HHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHH
Q 009517          292 QRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAE  371 (533)
Q Consensus       292 l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~  371 (533)
                      +++|+++|+++|+++|+||+|..    +..+ .++    ..+   ..+   +++.|++|.+.++  .++||+++   +++
T Consensus       162 ~~~i~~l~~~~~~~li~Dea~~~----g~~~-~~~----~~~---~~d---~~~~s~~K~~~~~--~g~g~~~~---~~~  221 (396)
T 2ch1_A          162 LEGVGQICHQHDCLLIVDAVASL----CGVP-FYM----DKW---EID---AVYTGAQKVLGAP--PGITPISI---SPK  221 (396)
T ss_dssp             CTTHHHHHHHTTCEEEEECTTTB----TTBC-CCT----TTT---TCC---EEECCCC-CCCCC--SSCEEEEE---CHH
T ss_pred             HHHHHHHHHHcCCEEEEEccccc----cCCc-cch----hhc---CcC---EEEEcCCccccCC--CCeEEEEE---CHH
Confidence            89999999999999999999982    2211 111    111   223   5678999987543  45599988   888


Q ss_pred             HHHHHHHhh-----------------------h-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 009517          372 VREQIYKVA-----------------------S-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAK  427 (533)
Q Consensus       372 ~~~~l~~~~-----------------------~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (533)
                      +++.+....                       . ..++++..++.++.++|+.       +  ..+.+++++++++++++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~-------~--~~~~~~~~~~~~~~~~~  292 (396)
T 2ch1_A          222 ALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQ-------I--AEEGLENQIKRRIECAQ  292 (396)
T ss_dssp             HHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHH-------H--HHHCHHHHHHHHHHHHH
T ss_pred             HHHhhhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHH-------H--HHhhHHHHHHHHHHHHH
Confidence            887775310                       1 2244677778777777631       0  11235678888999999


Q ss_pred             HHHHHHhcCCCceEecCCce----eEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEE
Q 009517          428 TLEDAFNSLEGITCNKAEGA----MYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFR  503 (533)
Q Consensus       428 ~l~~~L~~~~g~~~~~~~gg----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iR  503 (533)
                      ++.+.|+++ |+.++.+.++    .++++.++  .+         . +...++..+++++||.+.+|..+.   +.++||
T Consensus       293 ~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~--~~---------~-~~~~~~~~L~~~~gi~v~~g~~~~---~~~~iR  356 (396)
T 2ch1_A          293 ILYEGLGKM-GLDIFVKDPRHRLPTVTGIMIP--KG---------V-DWWKVSQYAMNNFSLEVQGGLGPT---FGKAWR  356 (396)
T ss_dssp             HHHHHHHHH-TCCBSSCSGGGBCTTEEEEECC--TT---------C-CHHHHHHHHHHHHCBCCBCCCGGG---TTTEEE
T ss_pred             HHHHHHHHC-CCeeccCCccccCCceEEEEcC--CC---------C-CHHHHHHHHHHhCCEEEecCcccc---CCCEEE
Confidence            999999998 8888777653    25554442  11         1 244555566666799999987553   233899


Q ss_pred             EEe-c--CCcCcHHHHHHHHHHHHHHHHHH
Q 009517          504 CTI-L--PQEDKIPAIVTRLTDFHKNFMDK  530 (533)
Q Consensus       504 is~-~--~~~e~i~~~~~~l~~~l~~~~~~  530 (533)
                      |++ .  .+++++++++++|+++++++...
T Consensus       357 i~~~~~~~~~e~i~~~~~~l~~~l~~~~~~  386 (396)
T 2ch1_A          357 VGIMGECSTVQKIQFYLYGFKESLKATHPD  386 (396)
T ss_dssp             EECCGGGCSHHHHHHHHHHHHHHHHHHCTT
T ss_pred             EECCCCcCCHHHHHHHHHHHHHHHHHhCcc
Confidence            999 4  47888999999999999887543

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=100.00  E-value=1.4e-31  Score=271.06  Aligned_cols=324  Identities=13%  Similarity=0.092  Sum_probs=234.5

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      |+.+++++.+++.        .|.+..|..++++++++++.+.+|  .++++|++|+|+++++..+++.++ ++||+|++
T Consensus        27 ~~~v~~a~~~~~~--------~~~~~~g~~~~~~~~~~~l~~~~g--~~~~~v~~~~g~t~a~~~~~~~~~-~~gd~vl~   95 (359)
T 1svv_A           27 HPKILDLMARDNM--------TQHAGYGQDSHCAKAARLIGELLE--RPDADVHFISGGTQTNLIACSLAL-RPWEAVIA   95 (359)
T ss_dssp             CHHHHHHHHHHTT--------CCCCSTTCSHHHHHHHHHHHHHHT--CTTSEEEEESCHHHHHHHHHHHHC-CTTEEEEE
T ss_pred             CHHHHHHHHHHHh--------hccccccccHHHHHHHHHHHHHhC--CCCccEEEeCCchHHHHHHHHHHh-CCCCEEEE
Confidence            6888888887764        256666778899999999988888  567899999999999999999998 79999999


Q ss_pred             cCCcCcchHH--HHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHH-HhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHH
Q 009517          221 PIPQYPLYSA--SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAA-KAKGITVRALVVINPGNPTGQVLAEENQRAIVD  297 (533)
Q Consensus       221 ~~p~~~~~~~--~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~-~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~  297 (533)
                      ++|+|+.+..  .++..|.+++.++.+   ++.+|+++|++.+++. ...+.++++|++++| ||||.+++.+++++|++
T Consensus        96 ~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~~~~~l~~i~~  171 (359)
T 1svv_A           96 TQLGHISTHETGAIEATGHKVVTAPCP---DGKLRVADIESALHENRSEHMVIPKLVYISNT-TEVGTQYTKQELEDISA  171 (359)
T ss_dssp             ETTSHHHHSSTTHHHHTTCCEEEECCT---TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCCCHHHHHHHHH
T ss_pred             cccchHHHHHHHHHhcCCCeeEEEeCC---CCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCCceecCHHHHHHHHH
Confidence            9999999887  478889999999975   5789999999999872 011223899999999 79999999999999999


Q ss_pred             HHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHH
Q 009517          298 FCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY  377 (533)
Q Consensus       298 l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~  377 (533)
                      +|++||+++|+||+|.++.+...........+ ..    ..+   +++.|++|.. +  ...+|++++   ++++++.+.
T Consensus       172 ~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~-~~----~~d---~~~~s~~K~g-~--~~~~g~l~~---~~~~~~~~~  237 (359)
T 1svv_A          172 SCKEHGLYLFLDGARLASALSSPVNDLTLADI-AR----LTD---MFYIGATKAG-G--MFGEALIIL---NDALKPNAR  237 (359)
T ss_dssp             HHHHHTCEEEEECTTHHHHHTSTTCCCCHHHH-HH----HCS---EEEEECTTTT-C--SSCEEEEEC---SGGGCTTHH
T ss_pred             HHHHhCCEEEEEccchhhhhcCCCcchhhhhh-hh----cCC---EEEEecccCC-C--CCceEEEEE---cccHHHHHH
Confidence            99999999999999966433211111111111 01    134   6678899963 3  356799987   888877776


Q ss_pred             Hhh--h-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEeccc
Q 009517          378 KVA--S-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRI  454 (533)
Q Consensus       378 ~~~--~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~  454 (533)
                      ...  . ..+..+.....++..++..            ...++++++++++++++.+.| +.+|+.++.+.+++|+|+++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~l~~------------~~~~~~~~~~~~~~~~l~~~L-~~~~~~~~~~~~~~~~~~~~  304 (359)
T 1svv_A          238 HLIKQRGALMAKGWLLGIQFEVLMKD------------NLFFELGAHSNKMAAILKAGL-EACGIRLAWPSASNQLFPIL  304 (359)
T ss_dssp             HHHHHTTCCCTTTHHHHHHHHHHTST------------THHHHHHHHHHHHHHHHHHHH-HHTTCCBSSCCSSSEECBEE
T ss_pred             HHHhcCCcccccchhhHHHHHHHHhh------------hhHHHHHHHHHHHHHHHHHHh-ccCCeEEccCCccceEEEEc
Confidence            542  1 2122222222333345542            113557778889999999999 45689888888999999654


Q ss_pred             CCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 009517          455 QLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~~  527 (533)
                      +                 ..++..+++++||.+.+..    ..+.++|||++.  .+++++++++++|+++++++
T Consensus       305 ~-----------------~~~~~~l~~~~gi~v~~~~----~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  358 (359)
T 1svv_A          305 E-----------------NTMIAELNNDFDMYTVEPL----KDGTCIMRLCTSWATEEKECHRFVEVLKRLVAST  358 (359)
T ss_dssp             E-----------------HHHHHHHTTTEECEEEEEE----TTTEEEEEEECCTTCCHHHHHHHHHHHHHC----
T ss_pred             C-----------------HHHHHHHHHhcCEEEEecc----cCCCceEEEEccCcCCHHHHHHHHHHHHHHHhcc
Confidence            3                 1234455544499983210    124459999885  78899999999999887654

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=100.00  E-value=1.2e-31  Score=276.46  Aligned_cols=328  Identities=13%  Similarity=0.072  Sum_probs=233.4

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccC----CCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHh---ccC
Q 009517          141 SADSIERAWQILDQIPGRATGAYS----HSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL---IRS  213 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~----~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l---~~~  213 (533)
                      |+.+++++.+.+..........|.    ...+..+++++++++++      .++++|++|+|+++++..+++++   . .
T Consensus        39 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g------~~~~~v~~~~g~t~al~~~~~~l~~~~-~  111 (406)
T 3cai_A           39 PDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVN------ADPGGVVLGADRAVLLSLLAEASSSRA-G  111 (406)
T ss_dssp             CHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHT------CCGGGEEEESCHHHHHHHHHHHTGGGG-B
T ss_pred             CHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhC------CCCCeEEEeCChHHHHHHHHHHHhhcc-C
Confidence            789999998888753211111232    24457888999988874      56789999999999999999987   5 6


Q ss_pred             CCCeEEEcCCcCcchHHHHHH----hCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCH
Q 009517          214 ENDGILCPIPQYPLYSASIAL----HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAE  289 (533)
Q Consensus       214 ~gd~Vlv~~p~~~~~~~~~~~----~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~  289 (533)
                      +||+|+++.|+|+.+...+..    .|++++.++++++ ++.+|+++|++++++      ++++|++++|+||||.+++ 
T Consensus       112 ~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~-~~~~d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~-  183 (406)
T 3cai_A          112 LGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIE-TGELPTWQWESLISK------STRLVAVNSASGTLGGVTD-  183 (406)
T ss_dssp             TTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTT-TCCCCGGGHHHHCCT------TEEEEEEESBCTTTCBBCC-
T ss_pred             CCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcc-cCCcCHHHHHHHhCC------CceEEEEeCCcCCccccCC-
Confidence            899999999999987655544    6999999998743 457899999999975      7999999999999999998 


Q ss_pred             HHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeE-EEEEecC
Q 009517          290 ENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGG-YMEVTGF  368 (533)
Q Consensus       290 ~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG-~v~~~~~  368 (533)
                        +++|.++|+++|+++|+||+|..    +..+ .++..    +   ..+   +++.|+||.+ | ++  +| |+++   
T Consensus       184 --l~~i~~l~~~~~~~li~D~a~~~----g~~~-~~~~~----~---~~d---~~~~s~~K~~-g-~~--~G~~~~~---  239 (406)
T 3cai_A          184 --LRAMTKLVHDVGALVVVDHSAAA----PYRL-LDIRE----T---DAD---VVTVNAHAWG-G-PP--IGAMVFR---  239 (406)
T ss_dssp             --CHHHHHHHHHTTCEEEEECTTTT----TTCC-CCHHH----H---CCS---EEEEEGGGGT-S-CS--CEEEEES---
T ss_pred             --HHHHHHHHHHcCCEEEEEccccc----CCCC-CCchh----c---CCC---EEEeehhhhc-C-CC--cCeEEEE---
Confidence              88999999999999999999974    2111 22222    2   234   7789999976 5 44  89 9987   


Q ss_pred             CHHHHHHHHHhhh----------ccccCChHHHHHHHHHcCCCCC-C----ChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009517          369 SAEVREQIYKVAS----------VNLCSNISGQILASLVMSPPKV-G----DESYESYCAERDGILSSLARRAKTLEDAF  433 (533)
Q Consensus       369 ~~~~~~~l~~~~~----------~~~~~~~~~q~a~~~~L~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~L  433 (533)
                      ++++++.+.....          ..++++..++.++..+++.... +    ......+.+++++++++++++++++.+.|
T Consensus       240 ~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L  319 (406)
T 3cai_A          240 DPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSL  319 (406)
T ss_dssp             CHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            8888776654321          1234566665555444421000 0    00001122246778888999999999999


Q ss_pred             hcCCCceEecCC---ceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCC------CCCCCCCCceEEE
Q 009517          434 NSLEGITCNKAE---GAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGS------GFGQVPGTWHFRC  504 (533)
Q Consensus       434 ~~~~g~~~~~~~---gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~------~f~~~~g~~~iRi  504 (533)
                      ++++|+.+..+.   ++ ++++.++  .          . +...++ +.|.++||.+.+|.      .|+...+.+++||
T Consensus       320 ~~~~~~~~~~~~~~~~~-~~~~~~~--~----------~-~~~~~~-~~L~~~gi~v~~g~~~~~~~~~g~~~~~~~iRi  384 (406)
T 3cai_A          320 RSLPLVMLIGRPEAQIP-VVSFAVH--K----------V-PADRVV-QRLADNGILAIANTGSRVLDVLGVNDVGGAVTV  384 (406)
T ss_dssp             HTCTTEEECCCCSSBCS-EEEEEET--T----------B-CHHHHH-HHHHHTTEECEECCSCHHHHHHTTTTTTCCEEE
T ss_pred             hcCCCeEEcCCccccCC-EEEEEEC--C----------c-CHHHHH-HHHHHCCcEEecCChHHHHHHcCCCCCCCeEEE
Confidence            998888887664   55 4554443  1          1 233444 44567899999987      4443223458999


Q ss_pred             Eec--CCcCcHHHHHHHHHH
Q 009517          505 TIL--PQEDKIPAIVTRLTD  522 (533)
Q Consensus       505 s~~--~~~e~i~~~~~~l~~  522 (533)
                      ++.  .+++++++++++|++
T Consensus       385 s~~~~~t~e~i~~~~~~l~~  404 (406)
T 3cai_A          385 GLAHYSTMAEVDQLVRALAS  404 (406)
T ss_dssp             ECCTTCCHHHHHHHHHHHHT
T ss_pred             EeecCCCHHHHHHHHHHHHH
Confidence            997  578899999998875

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=100.00  E-value=2.4e-31  Score=279.03  Aligned_cols=343  Identities=11%  Similarity=0.015  Sum_probs=236.7

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc-------C
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-------S  213 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-------~  213 (533)
                      |+++++++.+++.+.    ...|....+..++++++++++.+..+  .+.++|++|+|+++|++.++++++.       .
T Consensus        69 ~p~v~~A~~~~~~~~----~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~  142 (460)
T 3gju_A           69 RQKIADAIATQAKNL----AYYHAYVGHGTEASITLAKMIIDRAP--KGMSRVYFGLSGSDANETNIKLIWYYNNVLGRP  142 (460)
T ss_dssp             CHHHHHHHHHHHHHH----SCCCCCTTCCCHHHHHHHHHHHHHSC--TTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCT
T ss_pred             CHHHHHHHHHHHHhc----cccccccccCCHHHHHHHHHHHhhCC--CCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCC
Confidence            689999999988762    23455555566777888888877654  4578999999999999999999872       1


Q ss_pred             CCCeEEEcCCcCcchHHHHHHhCC-------------eEEEEecCC---CCCCCCC--------HHHHHHHHHHHHhcCC
Q 009517          214 ENDGILCPIPQYPLYSASIALHGG-------------TLVPYYLDE---ATGWGLE--------TSEVKKQLEAAKAKGI  269 (533)
Q Consensus       214 ~gd~Vlv~~p~~~~~~~~~~~~g~-------------~~~~v~~~~---~~~~~ld--------~~~l~~~i~~~~~~g~  269 (533)
                      ++++|++.+|+|+++.......+.             .+..++...   .++++.+        +++|+++++...  ..
T Consensus       143 ~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~--~~  220 (460)
T 3gju_A          143 EKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEG--PE  220 (460)
T ss_dssp             TCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHC--GG
T ss_pred             CCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcC--CC
Confidence            458999999999998776665532             234444221   1122444        588888887421  12


Q ss_pred             CeeEEEEeCCCCCCcc-CCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecC
Q 009517          270 TVRALVVINPGNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSV  348 (533)
Q Consensus       270 ~~~~iil~~p~NPtG~-~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~  348 (533)
                      ++++|+++.++|++|. +++++.+++|+++|++||+++|+||+|++|.+.|.  ...+..  .++   .+|     +.+|
T Consensus       221 ~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~--~~~~~~--~~~---~pd-----i~t~  288 (460)
T 3gju_A          221 TIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGT--MFGSDH--YGI---KPD-----LITI  288 (460)
T ss_dssp             GEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SCHHHH--HTC---CCS-----EEEE
T ss_pred             CEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccc--cchHhh--cCC---CCC-----eeee
Confidence            5777777777888887 77888999999999999999999999999866553  222211  122   466     4578


Q ss_pred             CccCCCCCC-CeeEEEEEecCCHHHHHHHHHh-------h-hccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHH
Q 009517          349 SKGYYGECG-KRGGYMEVTGFSAEVREQIYKV-------A-SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGIL  419 (533)
Q Consensus       349 SK~~~gl~G-~riG~v~~~~~~~~~~~~l~~~-------~-~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~  419 (533)
                      ||++ + .| +|+||+++   ++++++.+...       . ..+++.++++|+++.++|+..       + ..+.+++++
T Consensus       289 sK~l-~-gG~~~lg~v~~---~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~-------~-~~~~~~~~~  355 (460)
T 3gju_A          289 AKGL-T-SAYAPLSGVIV---ADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELI-------D-EMDLVTNAG  355 (460)
T ss_dssp             CGGG-T-TTSSCCEEEEE---EHHHHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHH-------H-HTTHHHHHH
T ss_pred             ehhh-c-CCCCCeEEEEE---CHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHH-------H-hccHHHHHH
Confidence            9998 4 36 89999998   99999998642       2 367889999999999888411       0 011234444


Q ss_pred             HHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCC----CChHHHHHHHHHccceEEEcCCCCCC
Q 009517          420 SSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKT----VPDAFYCRRLLNATGIVLVPGSGFGQ  495 (533)
Q Consensus       420 ~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ll~~~gV~v~pg~~f~~  495 (533)
                      +..+..++.|.+.+++++++..+++.|.|+.+ .+.....     .....    .....++ +.|.++||.+.|+.    
T Consensus       356 ~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~-~~l~~~Gv~v~~~~----  424 (460)
T 3gju_A          356 ETGAYFRAELAKAVGGHKNVGEVRGDGMLAAV-EFVADKD-----DRVFFDASQKIGPQVA-TALAASGVIGRAMP----  424 (460)
T ss_dssp             HHHHHHHHHHHHHHTTSTTEEEEEEETTEEEE-EECSBTT-----TTBCCCGGGCHHHHHH-HHHHHTTEECEECS----
T ss_pred             HHHHHHHHHHHHHHhcCCCeEEEeeeeEEEEE-EEccCcc-----ccccccchHHHHHHHH-HHHHHCCeEEecCC----
Confidence            55555566666777777777888888876544 3321100     00000    0022333 44556799999864    


Q ss_pred             CCCCceEEEEe--cCCcCcHHHHHHHHHHHHHHHHH
Q 009517          496 VPGTWHFRCTI--LPQEDKIPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       496 ~~g~~~iRis~--~~~~e~i~~~~~~l~~~l~~~~~  529 (533)
                        +.+++||++  ..++++|++++++|+++++++.+
T Consensus       425 --~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~  458 (460)
T 3gju_A          425 --QGDILGFAPPLCLTREQADIVVSKTADAVKSVFA  458 (460)
T ss_dssp             --SSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             --CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence              123999996  48899999999999999987653

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=100.00  E-value=1e-31  Score=274.60  Aligned_cols=321  Identities=10%  Similarity=0.045  Sum_probs=233.4

Q ss_pred             CCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCe
Q 009517          138 GLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDG  217 (533)
Q Consensus       138 ~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~  217 (533)
                      ..+|+++++++.+.+..     ...+.......++++++++++    |.+.++++|++|+|+++++. ++..++ ++||+
T Consensus        11 ~~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~~~~~la~~~----~~~~~~~~v~~~~g~t~al~-~~~~~~-~~gd~   79 (384)
T 3zrp_A           11 TTIKEDVLVAGLENNVG-----FTSKEFVEALAYSLKGLRYVM----GASKNYQPLIIPGGGTSAME-SVTSLL-KPNDK   79 (384)
T ss_dssp             SCCCHHHHHHTTCCSCC-----TTSHHHHHHHHHHHHHHHHHH----TCCTTSEEEEEESCHHHHHH-HGGGGC-CTTCE
T ss_pred             CCCCHHHHHHhhccccc-----cccHHHHHHHHHHHHHHHHHh----CCCCCCcEEEEcCCcHHHHH-HHHhhc-CCCCE
Confidence            33478888776554432     111222334566677777766    43333388999999999999 998887 89999


Q ss_pred             EEEcCCcCcc--hHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHH
Q 009517          218 ILCPIPQYPL--YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAI  295 (533)
Q Consensus       218 Vlv~~p~~~~--~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i  295 (533)
                      |++++|+|++  +...+...|++++.++++.  ++.+|++++++++++.     ++++|++++|+||||.+++   +++|
T Consensus        80 vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i  149 (384)
T 3zrp_A           80 ILVVSNGVFGDRWEQIFKRYPVNVKVLRPSP--GDYVKPGEVEEEVRKS-----EYKLVALTHVETSTGVREP---VKDV  149 (384)
T ss_dssp             EEEECSSHHHHHHHHHHTTSSCEEEEECCST--TCCCCHHHHHHHHHHS-----CEEEEEEESEETTTTEECC---HHHH
T ss_pred             EEEecCCcchHHHHHHHHHcCCcEEEecCCC--CCCCCHHHHHHHHHhC-----CCcEEEEeCCCCCCceECc---HHHH
Confidence            9999999966  5566677899999999876  4578999999999874     6999999999999999999   8899


Q ss_pred             HHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHH
Q 009517          296 VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQ  375 (533)
Q Consensus       296 ~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~  375 (533)
                      .++|++||+++|+|++|......     .++    ...   ..+   +++.|+||+++|+  .++||+++   ++++++.
T Consensus       150 ~~l~~~~~~~li~D~a~~~~~~~-----~~~----~~~---~~d---~~~~s~~K~~~~~--~g~g~~~~---~~~~~~~  209 (384)
T 3zrp_A          150 INKIRKYVELIVVDGVSSVGAEE-----VKA----EEW---NVD---VYLTASQKALGSA--AGLGLLLL---SPKALSI  209 (384)
T ss_dssp             HHHHGGGEEEEEEECTTTTTTSC-----CCT----TTT---TCS---EEEEETTSTTCCC--SSEEEEEE---CHHHHHH
T ss_pred             HHHHHhcCCEEEEECcccccCcc-----ccc----ccc---CCC---EEEecCcccccCC--CceEEEEE---CHHHHHH
Confidence            99999999999999998743221     111    111   123   7899999988544  45899998   8888877


Q ss_pred             H-------------HHhhh----------cc-ccCChHHHHHHHHHcCCCCCCChhHHHHHHH-HHHHHHHHHHHHHHHH
Q 009517          376 I-------------YKVAS----------VN-LCSNISGQILASLVMSPPKVGDESYESYCAE-RDGILSSLARRAKTLE  430 (533)
Q Consensus       376 l-------------~~~~~----------~~-~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~  430 (533)
                      +             .....          .. .+++...+.++..+++          ...++ +++++++++++++++.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~----------~~~~~~~~~~~~~~~~~~~~l~  279 (384)
T 3zrp_A          210 LDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFR----------LIEKEGIENRIKRHTMVASAIR  279 (384)
T ss_dssp             HHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHH----------HHHHHCHHHHHHHHHHHHHHHH
T ss_pred             hcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHH----------HHHhcCHHHHHHHHHHHHHHHH
Confidence            7             22211          11 2556666666655553          11222 5778888999999999


Q ss_pred             HHHhcCCCceEecCC----ceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEe
Q 009517          431 DAFNSLEGITCNKAE----GAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTI  506 (533)
Q Consensus       431 ~~L~~~~g~~~~~~~----gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~  506 (533)
                      +.|+++ |+.+..+.    +++++|+.++.             .+...++.. |.++||.+.||..+..    ++|||++
T Consensus       280 ~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~-l~~~gi~v~~g~~~~~----~~iRi~~  340 (384)
T 3zrp_A          280 AGLEAL-GLEIVARRPESYSNTVTGVILKV-------------ADPQKVLAG-TVNEGVEFAPGVHPAF----KYFRIGH  340 (384)
T ss_dssp             HHHHHT-TCCBSCSSGGGBCSSEEEEECSS-------------SCHHHHHHH-HHTTTCCCEECCCTTC----CEEEEEC
T ss_pred             HHHHHC-CCeEccCcccccCccEEEEECCC-------------CCHHHHHHH-HHHCCEEEecCCCCCc----CEEEEec
Confidence            999998 88887776    45666654441             123444444 5567999999875432    4999998


Q ss_pred             c--CCcCcHHHHHHHHHHHHHHHH
Q 009517          507 L--PQEDKIPAIVTRLTDFHKNFM  528 (533)
Q Consensus       507 ~--~~~e~i~~~~~~l~~~l~~~~  528 (533)
                      .  .+++++++++++|+++++++.
T Consensus       341 ~~~~~~e~i~~~~~~l~~~l~~~~  364 (384)
T 3zrp_A          341 MGWVTPNDAIIAISVIERTLRKLG  364 (384)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred             cccCCHHHHHHHHHHHHHHHHHcC
Confidence            6  788999999999999998764

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=100.00  E-value=1.3e-31  Score=277.83  Aligned_cols=325  Identities=12%  Similarity=0.100  Sum_probs=221.2

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      |+++++++.+++....     .|++..+..+++.++++.+.+.+|.+. +++|++|+|+++++..+++.+...+|++|++
T Consensus        61 ~p~v~~a~~~~~~~~~-----~~~~~~~~~~~~~~l~~~la~~~~~~~-~~~v~~~~gg~ea~~~ai~~~~~~~~~~vi~  134 (419)
T 2eo5_A           61 HPEVIKIGIEQMQKLA-----HAAANDFYNIPQLELAKKLVTYSPGNF-QKKVFFSNSGTEAIEASIKVVKNTGRKYIIA  134 (419)
T ss_dssp             CHHHHHHHHHHHTTSC-----CCSCSCSCCHHHHHHHHHHHHHSSCSS-CEEEEEESSHHHHHHHHHHHHHTTSCCEEEE
T ss_pred             CHHHHHHHHHHHhhCc-----cccccccCCHHHHHHHHHHHHhCCCCc-CCEEEEeCchHHHHHHHHHHHHHhhCCcEEE
Confidence            5889999999887521     233222333445555555555556433 6899999999999999999876224899999


Q ss_pred             cCCcCcchHHHHH-HhC-------------CeEEEEecCCC--CCCC------------CCHHHHH-HHHHHHHhcCCCe
Q 009517          221 PIPQYPLYSASIA-LHG-------------GTLVPYYLDEA--TGWG------------LETSEVK-KQLEAAKAKGITV  271 (533)
Q Consensus       221 ~~p~~~~~~~~~~-~~g-------------~~~~~v~~~~~--~~~~------------ld~~~l~-~~i~~~~~~g~~~  271 (533)
                      ++|+|+++..... ..|             ..++.++.+..  ..|+            +|+++|+ +++++.. ...++
T Consensus       135 ~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~-~~~~~  213 (419)
T 2eo5_A          135 FLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLV-PPEEV  213 (419)
T ss_dssp             ETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTC-CGGGE
T ss_pred             ECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhcc-CCCCE
Confidence            9999997655433 222             24667776432  1123            4688999 8887410 00156


Q ss_pred             eEEEEeCCCCCCcc-CCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCc
Q 009517          272 RALVVINPGNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSK  350 (533)
Q Consensus       272 ~~iil~~p~NPtG~-~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK  350 (533)
                      ++|+++..|||||. +++++++++|+++|++||+++|+||+|.+|.+.|.  ...+..  ..+   .++     +.||||
T Consensus       214 ~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~--~~~~~~--~~~---~~d-----~~t~sK  281 (419)
T 2eo5_A          214 AGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGK--LFAIEN--FNT---VPD-----VITLAK  281 (419)
T ss_dssp             EEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSGGGG--GTC---CCS-----EEEECG
T ss_pred             EEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcc--hhhHHh--cCC---CCC-----EEEecc
Confidence            55554433568996 77899999999999999999999999999876543  111111  112   355     348999


Q ss_pred             cCCCCCC-CeeEEEEEecCCHHHHHHHHHhhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 009517          351 GYYGECG-KRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTL  429 (533)
Q Consensus       351 ~~~gl~G-~riG~v~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  429 (533)
                      .+ | .| +|+||+++   +++++ .+......+++.++++|+++.++|+           .   .+++.++++++++++
T Consensus       282 ~~-~-~G~~riG~~~~---~~~~~-~~~~~~~~t~~~n~~~~~aa~aal~-----------~---~~~~~~~~~~~~~~l  341 (419)
T 2eo5_A          282 AL-G-GGIMPIGATIF---RKDLD-FKPGMHSNTFGGNALACAIGSKVID-----------I---VKDLLPHVNEIGKIF  341 (419)
T ss_dssp             GG-G-TTTSCCEEEEE---EGGGC-CC------CCCCCHHHHHHHHHHHH-----------H---HHHHHHHHHHHHHHH
T ss_pred             cc-c-CCccceEEEEE---chHhh-cCCcccCCCCCCCHHHHHHHHHHHH-----------H---HHHHHHHHHHHHHHH
Confidence            99 5 49 99999998   77777 6621334678889999999988873           1   122778889999999


Q ss_pred             HHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--
Q 009517          430 EDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--  507 (533)
Q Consensus       430 ~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--  507 (533)
                      .+.|+++  +..+++.|.| +|+++. +...          ... ++..++ ++||.+.|+.       .+++||++.  
T Consensus       342 ~~~L~~~--~~~~~~~g~~-~~i~~~-~~~~----------~~~-~~~~l~-~~Gv~v~~~~-------~~~lRis~~~~  398 (419)
T 2eo5_A          342 AEELQGL--ADDVRGIGLA-WGLEYN-EKKV----------RDR-IIGESF-KRGLLLLPAG-------RSAIRVIPPLV  398 (419)
T ss_dssp             HHHHTTS--SSEEEEETTE-EEEECS-CHHH----------HHH-HHHHHH-HTTEECEEET-------TTEEEECCCTT
T ss_pred             HHHHHHh--hhheEeeeEE-EEEEEe-cCcc----------HHH-HHHHHH-HCCCEEecCC-------CCEEEEECCCC
Confidence            9999876  4555666654 454442 2110          123 455554 7899999853       238999874  


Q ss_pred             CCcCcHHHHHHHHHHHHHHH
Q 009517          508 PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       508 ~~~e~i~~~~~~l~~~l~~~  527 (533)
                      .+++++++++++|+++++++
T Consensus       399 ~t~e~i~~~l~~l~~~l~~~  418 (419)
T 2eo5_A          399 ISEEEAKQGLDILKKVIKVV  418 (419)
T ss_dssp             CCHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHHHhc
Confidence            78999999999999988653

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=100.00  E-value=4.7e-32  Score=278.39  Aligned_cols=308  Identities=11%  Similarity=0.120  Sum_probs=227.9

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCC------
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSE------  214 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~------  214 (533)
                      ++.+.+++.+++.+... ....|.. .-..++++.+++++    |    .+++++++|+++|+..+++.+. .+      
T Consensus        54 ~p~v~~a~~~~~~~~~~-~~~~~~~-~~~~~l~~~la~~~----g----~~~v~~~~~gt~a~~~al~~~~-~~~~~~~~  122 (392)
T 3ruy_A           54 HPKIINALIDQANRVTL-TSRAFHS-DQLGPWYEKVAKLT----N----KEMVLPMNTGAEAVETAIKTAR-RWAYDVKK  122 (392)
T ss_dssp             CHHHHHHHHHHHTTCSC-CCTTSEE-TTHHHHHHHHHHHH----T----CSEEEEESSHHHHHHHHHHHHH-HHHHHTSC
T ss_pred             CHHHHHHHHHHHHhccc-cccccCC-HHHHHHHHHHHHhc----C----CCEEEEeCcHHHHHHHHHHHHH-HhhhhccC
Confidence            68999999998876322 1111222 22566777777665    3    6799999999999999999876 33      


Q ss_pred             ----CCeEEEcCCcCcchHHHHHHhCCe-------------EEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEe
Q 009517          215 ----NDGILCPIPQYPLYSASIALHGGT-------------LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI  277 (533)
Q Consensus       215 ----gd~Vlv~~p~~~~~~~~~~~~g~~-------------~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~  277 (533)
                          +|+|+++.|+|+++...+...+..             +..++.       .|+++|++++++      ++++|+++
T Consensus       123 ~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~------~~~~v~~~  189 (392)
T 3ruy_A          123 VEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPY-------GDLEALKAAITP------NTAAFILE  189 (392)
T ss_dssp             CCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECT-------TCHHHHHHHCCT------TEEEEEEC
T ss_pred             CCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCc-------ccHHHHHHHhcc------CeEEEEEe
Confidence                679999999999877666554332             333332       279999999975      89999999


Q ss_pred             CCCCCCccCCCHHH-HHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCC
Q 009517          278 NPGNPTGQVLAEEN-QRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGEC  356 (533)
Q Consensus       278 ~p~NPtG~~~s~~~-l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~  356 (533)
                      +|+||||.+++.++ +++|+++|++||+++|+||+|.+|.+.+.  ......  .++   .+|     +.||||+++  +
T Consensus       190 ~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~--~~~~~~--~~~---~~d-----~~~~SK~l~--g  255 (392)
T 3ruy_A          190 PIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGK--VFACDW--DNV---TPD-----MYILGKALG--G  255 (392)
T ss_dssp             SSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSS--SSGGGG--GTC---CCS-----EEEECGGGG--T
T ss_pred             CccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcccc--chhhhc--cCC---CCC-----EEEEchhhh--C
Confidence            99999999996555 99999999999999999999998777553  111111  111   345     347899984  3


Q ss_pred             C-CeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009517          357 G-KRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFN  434 (533)
Q Consensus       357 G-~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  434 (533)
                      | +|+||+++   ++++++.+..... .+++++++++.++.++|+           ..+. ++++++++++++++.+.|+
T Consensus       256 G~~~~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~-----------~~~~-~~~~~~~~~~~~~l~~~L~  320 (392)
T 3ruy_A          256 GVFPISCAAA---NRDILGVFEPGSHGSTFGGNPLACAVSIAALE-----------VLEE-EKLTERSLQLGEKLVGQLK  320 (392)
T ss_dssp             TTSCCEEEEE---CHHHHTTCCTTSSCCSSTTCHHHHHHHHHHHH-----------HHHH-TTHHHHHHHHHHHHHHHHT
T ss_pred             ChhhhEEEEE---CHHHHhhhccCCcCCCCCCCHHHHHHHHHHHH-----------HHHh-hhHHHHHHHHHHHHHHHHH
Confidence            6 99999998   8888877766544 568889999999988874           1222 5677888999999999999


Q ss_pred             cC--CCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEe--cCCc
Q 009517          435 SL--EGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTI--LPQE  510 (533)
Q Consensus       435 ~~--~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~--~~~~  510 (533)
                      ++  +.+....+.|+++.|. ++.              +...++.. |.++||.+.||.       .+++||++  ..++
T Consensus       321 ~~~~~~~~~~~~~g~~~~~~-~~~--------------~~~~l~~~-l~~~gi~v~~~~-------~~~iRi~~~~~~~~  377 (392)
T 3ruy_A          321 EIDNPMITEVRGKGLFIGIE-LNE--------------PARPYCEQ-LKAAGLLCKETH-------ENVIRIAPPLVISE  377 (392)
T ss_dssp             TCCCTTEEEEEEETTEEEEE-ESS--------------CSHHHHHH-HHTTTEECCCBT-------TTEEEECCCTTCCH
T ss_pred             HhcCCCceEEEeeeeEEEEE-Ecc--------------hHHHHHHH-HHHCCcEEecCC-------CCEEEEECCCCCCH
Confidence            87  4467777888877663 431              13344444 557899999863       23899996  4788


Q ss_pred             CcHHHHHHHHHHHH
Q 009517          511 DKIPAIVTRLTDFH  524 (533)
Q Consensus       511 e~i~~~~~~l~~~l  524 (533)
                      +++++++++|++++
T Consensus       378 ~~i~~~~~~l~~~l  391 (392)
T 3ruy_A          378 EDLEWAFQKIKAVL  391 (392)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999999876

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=100.00  E-value=1e-31  Score=281.06  Aligned_cols=331  Identities=15%  Similarity=0.096  Sum_probs=224.6

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC-CCCeEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS-ENDGIL  219 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~-~gd~Vl  219 (533)
                      |+++++++.+++.+.     ..|....+..+++.++++++.+.++.. ..++|++|+|+++|++.+++.++.. .+++|+
T Consensus        82 ~p~v~~A~~~~~~~~-----~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~~v~~~~sGseA~~~alk~a~~~~g~~~ii  155 (453)
T 4ffc_A           82 HPAVAAAIADQATHF-----THTCFMVTPYEQYVQVAELLNALTPGD-HDKRTALFNSGAEAVENAIKVARLATGRPAVV  155 (453)
T ss_dssp             CHHHHHHHHHHHHHC-----SCCTTTTSCCHHHHHHHHHHHHHSSCS-SCEEEEEESSHHHHHHHHHHHHHHHHCCCEEE
T ss_pred             CHHHHHHHHHHHHhc-----cccccCcCCCHHHHHHHHHHHHhCCCC-CCcEEEEeCcHHHHHHHHHHHHHHhcCCCEEE
Confidence            799999999999873     345555556677777777777765422 2579999999999999999887522 348999


Q ss_pred             EcCCcCcchHHHHHHhCC--------------eEEEEecCC--CCCCCCCH--------HHHHHHHHHHHhcCCCeeEEE
Q 009517          220 CPIPQYPLYSASIALHGG--------------TLVPYYLDE--ATGWGLET--------SEVKKQLEAAKAKGITVRALV  275 (533)
Q Consensus       220 v~~p~~~~~~~~~~~~g~--------------~~~~v~~~~--~~~~~ld~--------~~l~~~i~~~~~~g~~~~~ii  275 (533)
                      +.+++|+++...+...+.              .+..++...  .+.++.+.        +.|++.+..      +..+++
T Consensus       156 ~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~------~~~aav  229 (453)
T 4ffc_A          156 AFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGA------QSLAAI  229 (453)
T ss_dssp             EETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCG------GGEEEE
T ss_pred             EEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCC------CCEEEE
Confidence            999999998776665532              244444431  11234442        333333322      455666


Q ss_pred             EeCCCCCCc--cCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCC
Q 009517          276 VINPGNPTG--QVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYY  353 (533)
Q Consensus       276 l~~p~NPtG--~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~  353 (533)
                      ++.|.|++|  ++++++.+++|+++|++||+++|+||+|.+|.+.|.  ...+..  .++   .++     +.+|||++ 
T Consensus       230 i~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~--~~a~~~--~~~---~pd-----i~t~sK~~-  296 (453)
T 4ffc_A          230 IIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGA--WFASEH--EGI---VPD-----IVTMAKGI-  296 (453)
T ss_dssp             EECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSTHHH--HTC---CCS-----EEEECGGG-
T ss_pred             EEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccc--cchhhh--cCC---Ccc-----hHhhhhhh-
Confidence            777777666  466888899999999999999999999999876553  222222  122   455     55899999 


Q ss_pred             CCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH-
Q 009517          354 GECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLED-  431 (533)
Q Consensus       354 gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-  431 (533)
                      +. |+|+||+++   ++++++.+.+... .++++++++|+++.++|+.           .+. +.+.++++++++++++ 
T Consensus       297 ~~-G~~~G~~~~---~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~-----------~~~-~~~~~~~~~~~~~l~~~  360 (453)
T 4ffc_A          297 AG-GMPLSAVTG---RAELMDAVYAGGLGGTYGGNPVTCAAAVAALGV-----------MRE-LDLPARARAIEASVTSR  360 (453)
T ss_dssp             GT-TSSCEEEEE---EHHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHH-----------HHH-TTHHHHHHHHHHHHHHH
T ss_pred             cC-CcCeEEEEE---CHHHHhhhcccCcCCCCCcCHHHHHHHHHHHHH-----------hhh-hhHHHHHHHHHHHHHHH
Confidence            54 999999998   8999888766544 6789999999999888741           110 2233334444444444 


Q ss_pred             ---HHhcCCCceEecCCceeEEecccCC-----CHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEE
Q 009517          432 ---AFNSLEGITCNKAEGAMYLFPRIQL-----PEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFR  503 (533)
Q Consensus       432 ---~L~~~~g~~~~~~~gg~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iR  503 (533)
                         .+.+++++..+++.|.| +|+.+..     |...          ....++ ..|.++||.+.|+..|+.     ++|
T Consensus       361 l~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~----------~~~~~~-~~l~~~Gv~v~~~~~~~~-----~iR  423 (453)
T 4ffc_A          361 LSALAEEVDIIGEVRGRGAM-LAIEIVKPGTLEPDAA----------LTKSIA-AEALSQGVLILTCGTFGN-----VIR  423 (453)
T ss_dssp             HHHHHHHCSSEEEEEEETTE-EEEEEBCTTSCCBCHH----------HHHHHH-HHHHHTTEECCEECTTSC-----EEE
T ss_pred             HHHHHhhCCCeEEEEeeceE-EEEEEecCcccCCCHH----------HHHHHH-HHHHhCCCEEecCCCCCC-----EEE
Confidence               44445667777777665 4444421     1110          123333 445568999999766542     889


Q ss_pred             EEec--CCcCcHHHHHHHHHHHHHHHHH
Q 009517          504 CTIL--PQEDKIPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       504 is~~--~~~e~i~~~~~~l~~~l~~~~~  529 (533)
                      |++.  .++++|++++++|+++++++.+
T Consensus       424 i~~~~~~t~e~i~~~l~~l~~~l~~~~~  451 (453)
T 4ffc_A          424 LLPPLVIGDDLLDEGITALSDIIRAKAS  451 (453)
T ss_dssp             ECCCTTCCHHHHHHHHHHHHHHHHHHC-
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            9874  7899999999999999988654

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.98  E-value=1.6e-31  Score=269.93  Aligned_cols=316  Identities=13%  Similarity=0.094  Sum_probs=231.6

Q ss_pred             CCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeE
Q 009517          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI  218 (533)
Q Consensus       139 ~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~V  218 (533)
                      .+|+.+++++.+.+..     ...|....+..++|++++++++      .++++|++|+|+++++..+++.+. ++||+|
T Consensus        11 ~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~l~~~la~~~g------~~~~~i~~~~g~t~a~~~~~~~~~-~~gd~v   78 (352)
T 1iug_A           11 RLHPKALEALARPQLH-----HRTEAAREVFLKARGLLREAFR------TEGEVLILTGSGTLAMEALVKNLF-APGERV   78 (352)
T ss_dssp             CCCHHHHHHHHSCCCC-----TTSHHHHHHHHHHHHHHHHHHT------CSSEEEEEESCHHHHHHHHHHHHC-CTTCEE
T ss_pred             CCCHHHHHHhccCCCC-----ccCHHHHHHHHHHHHHHHHHhC------CCCceEEEcCchHHHHHHHHHhcc-CCCCeE
Confidence            3478888887765542     1223333457889999999875      456899999999999999999998 799999


Q ss_pred             EEcCCcCcchH--HHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHH
Q 009517          219 LCPIPQYPLYS--ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIV  296 (533)
Q Consensus       219 lv~~p~~~~~~--~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~  296 (533)
                      +++.|+|+++.  ..+...|.+++.++++.  ++.+|++++++   +      ++++|++++|+||||.+++   +++|.
T Consensus        79 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~---~------~~~~v~~~~~~nptG~~~~---l~~i~  144 (352)
T 1iug_A           79 LVPVYGKFSERFYEIALEAGLVVERLDYPY--GDTPRPEDVAK---E------GYAGLLLVHSETSTGALAD---LPALA  144 (352)
T ss_dssp             EEEECSHHHHHHHHHHHHTTCEEEEEECCT--TCCCCTTTSCC---S------SCSEEEEESEETTTTEECC---HHHHH
T ss_pred             EEEeCCchhHHHHHHHHHcCCceEEEeCCC--CCCCCHHHHhc---c------CCcEEEEEEecCCcceecC---HHHHH
Confidence            99999999875  44566899999999865  34688888876   2      6899999999999999999   88999


Q ss_pred             HHHHHc--CCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHH
Q 009517          297 DFCKKE--GLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVRE  374 (533)
Q Consensus       297 ~l~~~~--~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~  374 (533)
                      ++|++|  |+++|+||+|..    +..+ ..+    ..+   ..+   +++.|+||++.|++  ++||+++   ++++++
T Consensus       145 ~l~~~~~~~~~li~D~a~~~----~~~~-~~~----~~~---~~d---~~~~s~~K~~~~~~--g~G~~~~---~~~~~~  204 (352)
T 1iug_A          145 RAFKEKNPEGLVGADMVTSL----LVGE-VAL----EAM---GVD---AAASGSQKGLMCPP--GLGFVAL---SPRALE  204 (352)
T ss_dssp             HHHHHHCTTCEEEEECTTTB----TTBC-CCS----GGG---TCS---EEEEESSSTTCCCS--CEEEEEE---CHHHHH
T ss_pred             HHHHhhCCCCEEEEECCccc----cCcc-eec----ccc---Cee---EEEecCcccccCCC--ceeEEEE---CHHHHH
Confidence            999999  999999999973    2111 111    111   233   77899999764544  4799998   888765


Q ss_pred             H---------HHH----hh-h-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 009517          375 Q---------IYK----VA-S-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGI  439 (533)
Q Consensus       375 ~---------l~~----~~-~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~  439 (533)
                      .         +..    .. . ..++++...+.++.++++.          +.+++++++++++++++++.+.|+++ |+
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~----------~~~~~~~~~~~~~~~~~~l~~~L~~~-g~  273 (352)
T 1iug_A          205 RLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEE----------VLPRLEEHLALKAWQNALLYGVGEEG-GL  273 (352)
T ss_dssp             TCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHH----------HGGGHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             HhhCCCceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHC-CC
Confidence            4         221    11 1 3355677777777666631          11225678888999999999999998 98


Q ss_pred             eEecCC-ceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHH
Q 009517          440 TCNKAE-GAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAI  516 (533)
Q Consensus       440 ~~~~~~-gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~  516 (533)
                      .+..+. .+.++|+.++  .+         . +...++.. |.++||.+.||..+   .+.+++||++.  .++++++++
T Consensus       274 ~~~~~~~~~~~~~~~~~--~~---------~-~~~~~~~~-l~~~gi~v~~~~~~---~~~~~iRi~~~~~~~~~~i~~~  337 (352)
T 1iug_A          274 RPVPKRFSPAVAAFYLP--EG---------V-PYARVKEA-FAQRGAVIAGGQGP---LKGKVFRLSLMGAYDRYEALGV  337 (352)
T ss_dssp             EESCSSBCTTCEEEECC--TT---------C-CHHHHHHH-HHTTTEECEECCGG---GTTTEEEECCCSSCCHHHHHHH
T ss_pred             cccccccCCeEEEEEcC--CC---------C-CHHHHHHH-HHHCCEEEEeCCCc---cCCCEEEEEccccCCHHHHHHH
Confidence            887774 5566775543  11         1 23444444 55679999998843   22349999997  578999999


Q ss_pred             HHHHHHHHHHH
Q 009517          517 VTRLTDFHKNF  527 (533)
Q Consensus       517 ~~~l~~~l~~~  527 (533)
                      +++|+++++++
T Consensus       338 ~~~l~~~~~~~  348 (352)
T 1iug_A          338 AGMFREVLEEI  348 (352)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998775

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=99.98  E-value=3.3e-31  Score=277.43  Aligned_cols=337  Identities=13%  Similarity=0.096  Sum_probs=226.1

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc----C---
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR----S---  213 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~----~---  213 (533)
                      |+++++++.+++.+..    +  ....+..+++.++++++.+.++  ...+ |++|+|+++|++.+++.++.    .   
T Consensus        67 ~p~v~~A~~~~~~~~~----~--~~~~~~~~~~~~la~~l~~~~~--~~~~-v~~~~ggseA~~~al~~~~~~~~~~g~~  137 (452)
T 3n5m_A           67 RKELAEAAYKQLQTLS----Y--FPMSQSHEPAIKLAEKLNEWLG--GEYV-IFFSNSGSEANETAFKIARQYYAQKGEP  137 (452)
T ss_dssp             CHHHHHHHHHHHTTCC----C--CCTTSEEHHHHHHHHHHHHHHT--SCEE-EEEESSHHHHHHHHHHHHHHHHHTTTCT
T ss_pred             CHHHHHHHHHHHHhcC----C--cccccCCHHHHHHHHHHHHhCC--CCce-EEEeCchHHHHHHHHHHHHHHHHhcCCC
Confidence            6899999999987621    1  2233445666666666666555  3344 99999999999999998861    2   


Q ss_pred             CCCeEEEcCCcCcchHHHHHHhCCe-------------EEEEecCCCCCCCC-C---------HHHHHHHHHHHHhcCCC
Q 009517          214 ENDGILCPIPQYPLYSASIALHGGT-------------LVPYYLDEATGWGL-E---------TSEVKKQLEAAKAKGIT  270 (533)
Q Consensus       214 ~gd~Vlv~~p~~~~~~~~~~~~g~~-------------~~~v~~~~~~~~~l-d---------~~~l~~~i~~~~~~g~~  270 (533)
                      ++++|++.+|+|+++.......+..             +..++......+.. |         +++|+++++..  ...+
T Consensus       138 ~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~  215 (452)
T 3n5m_A          138 HRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWE--LSET  215 (452)
T ss_dssp             TCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHH--CGGG
T ss_pred             CCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhc--CCCC
Confidence            5789999999999987666655432             23333211111111 2         89999999721  0126


Q ss_pred             eeEEEEeCC-CCCCccCC-CHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecC
Q 009517          271 VRALVVINP-GNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSV  348 (533)
Q Consensus       271 ~~~iil~~p-~NPtG~~~-s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~  348 (533)
                      +++|+++.+ +| ||.++ +++++++|+++|++||+++|+||+|++|.+.|.  ....     +..+..++     +.+|
T Consensus       216 ~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~--~~~~-----~~~~~~~d-----i~t~  282 (452)
T 3n5m_A          216 IAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGK--AFGF-----MNYDVKPD-----IITM  282 (452)
T ss_dssp             EEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSGG-----GGTTCCCS-----EEEE
T ss_pred             EEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccc--cchh-----hhcCCCCC-----EEee
Confidence            788888888 89 99755 888899999999999999999999999876553  2111     11111455     4579


Q ss_pred             CccCCCCCC-CeeEEEEEecCCHHHHHHHHH------h-hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHH
Q 009517          349 SKGYYGECG-KRGGYMEVTGFSAEVREQIYK------V-ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILS  420 (533)
Q Consensus       349 SK~~~gl~G-~riG~v~~~~~~~~~~~~l~~------~-~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~  420 (533)
                      ||++ +. | +|+||+++   ++++++.+.+      + ...++++++++++++.++|+.           .+. +.+.+
T Consensus       283 sK~l-~~-G~~~ig~~~~---~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~-----------~~~-~~~~~  345 (452)
T 3n5m_A          283 AKGI-TS-AYLPLSATAV---KREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEI-----------IEN-ENLIE  345 (452)
T ss_dssp             CGGG-GT-TSSCCEEEEE---EHHHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHH-----------HHH-TTHHH
T ss_pred             cccc-cC-CCcceEEEEE---CHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHHH-----------HHh-ccHHH
Confidence            9999 54 9 99999998   9999988743      1 236788999999999888741           111 23334


Q ss_pred             HHHHHHHHHHHHH----hcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCC--ChHHHHHHHHHccceEEEcCCCCC
Q 009517          421 SLARRAKTLEDAF----NSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTV--PDAFYCRRLLNATGIVLVPGSGFG  494 (533)
Q Consensus       421 ~~~~~~~~l~~~L----~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~gV~v~pg~~f~  494 (533)
                      +++++++++++.|    .+++++..+++.|.|+.+ .+......     .....  ....++ +.|.++||.+.|+..|.
T Consensus       346 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i-~~~~~~~~-----~~~~~~~~~~~~~-~~l~~~Gv~~~~~~~~~  418 (452)
T 3n5m_A          346 RSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLLVGI-ELVNDKET-----KEPIDNDKIASVV-NACKEKGLIIGRNGMTT  418 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTTEEEEEESSSCEEE-EEEEETTT-----TEECCHHHHHHHH-HHHHHTTEECEECTTSS
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEE-EEecCCcc-----cCCCCHHHHHHHH-HHHHHCCcEEeecCccc
Confidence            4444444444444    455667778888776543 33100000     00000  012333 44556899999998775


Q ss_pred             CCCCCceEEEEe--cCCcCcHHHHHHHHHHHHHH
Q 009517          495 QVPGTWHFRCTI--LPQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       495 ~~~g~~~iRis~--~~~~e~i~~~~~~l~~~l~~  526 (533)
                       ..+.++|||++  ..++++|++++++|++++++
T Consensus       419 -~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  451 (452)
T 3n5m_A          419 -AGYNNILTLAPPLVISSEEIAFVIGTLKTAMER  451 (452)
T ss_dssp             -TTCCCEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred             -CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence             34456999986  48999999999999998753

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=99.98  E-value=3.6e-31  Score=277.59  Aligned_cols=341  Identities=13%  Similarity=0.095  Sum_probs=230.5

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC-------
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS-------  213 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~-------  213 (533)
                      |+++++++.+++.+.    ...|+...+..++++++++++.+.++  .+.++|++|+|+++|++.+++.++ .       
T Consensus        68 ~p~v~~A~~~~~~~~----~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~ggseA~~~al~~~~-~~~~~~g~  140 (459)
T 4a6r_A           68 RKDFAEAARRQMEEL----PFYNTFFKTTHPAVVELSSLLAEVTP--AGFDRVFYTNSGSESVDTMIRMVR-RYWDVQGK  140 (459)
T ss_dssp             CHHHHHHHHHHHHHC----SCCCTTSSSCCHHHHHHHHHHHHHSC--TTCCEEEEESSHHHHHHHHHHHHH-HHHHHTTC
T ss_pred             CHHHHHHHHHHHHhc----cccccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCchHHHHHHHHHHHH-HHHHhcCC
Confidence            689999999999873    22455545566778888888877765  456799999999999999999987 4       


Q ss_pred             -CCCeEEEcCCcCcchHHHHHHhCC-------------eEEEEecCC---CCCCCCC--------HHHHHHHHHHHHhcC
Q 009517          214 -ENDGILCPIPQYPLYSASIALHGG-------------TLVPYYLDE---ATGWGLE--------TSEVKKQLEAAKAKG  268 (533)
Q Consensus       214 -~gd~Vlv~~p~~~~~~~~~~~~g~-------------~~~~v~~~~---~~~~~ld--------~~~l~~~i~~~~~~g  268 (533)
                       ++++|++.+|+|+++.......+.             .+..++...   .+.+ +|        +++|++.++....  
T Consensus       141 ~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~~~--  217 (459)
T 4a6r_A          141 PEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILEIGA--  217 (459)
T ss_dssp             TTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCG--
T ss_pred             CCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHHcCC--
Confidence             468999999999998876666543             222333211   0112 34        7888888875310  


Q ss_pred             CCeeEEEEeCCCCCCcc-CCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEec
Q 009517          269 ITVRALVVINPGNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQS  347 (533)
Q Consensus       269 ~~~~~iil~~p~NPtG~-~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S  347 (533)
                      .++++|+++.++|++|. +++++++++|+++|++||+++|+||+|.+|.+.|.  ...+..  .++   .+|     +.+
T Consensus       218 ~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~--~~~~~~--~~~---~pd-----i~t  285 (459)
T 4a6r_A          218 DKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGE--WFGHQH--FGF---QPD-----LFT  285 (459)
T ss_dssp             GGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SSHHHH--HTC---CCS-----EEE
T ss_pred             CCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccc--cchHhh--cCC---CCC-----eee
Confidence            14566665555666666 56999999999999999999999999999876653  222211  122   466     447


Q ss_pred             CCccCCCCCCCeeEEEEEecCCHHHHHHHH---Hhh-hccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHH-HHH
Q 009517          348 VSKGYYGECGKRGGYMEVTGFSAEVREQIY---KVA-SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGIL-SSL  422 (533)
Q Consensus       348 ~SK~~~gl~G~riG~v~~~~~~~~~~~~l~---~~~-~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~-~~~  422 (533)
                      |||++ +..|+|+||+++   ++++++.+.   ... ..+++.++++++++.++|+..       +. .+.+++.+ +..
T Consensus       286 ~sK~l-~gg~~~lg~v~~---~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~-------~~-~~~~~~~~~~~~  353 (459)
T 4a6r_A          286 AAKGL-SSGYLPIGAVFV---GKRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAAL-------RD-EGIVQRVKDDIG  353 (459)
T ss_dssp             ECGGG-GTTSSCCEEEEE---CHHHHHHHHHHCTTHHHHHHCSCHHHHHHHHHHHHHH-------HH-TCHHHHHHHTHH
T ss_pred             hhhhh-cCCCCCccceee---CHHHHHHhhcCCCcccCCCCCCCHHHHHHHHHHHHHH-------hc-chHHHHHHHHHH
Confidence            89998 433499999998   999999987   333 367899999999998888411       00 01122233 233


Q ss_pred             HHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCC----ChHHHHHHHHHccceEEEcCCCCCCCCC
Q 009517          423 ARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTV----PDAFYCRRLLNATGIVLVPGSGFGQVPG  498 (533)
Q Consensus       423 ~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ll~~~gV~v~pg~~f~~~~g  498 (533)
                      +..++.|.+.|.+++++..+++.|.|+.+ .+.....     ......    ....++.. |.++||++.|+.       
T Consensus       354 ~~~~~~l~~~l~~~~~~~~~~~~g~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~-l~~~Gv~v~~~g-------  419 (459)
T 4a6r_A          354 PYMQKRWRETFSRFEHVDDVRGVGMVQAF-TLVKNKA-----KRELFPDFGEIGTLCRDI-FFRNNLIMRACG-------  419 (459)
T ss_dssp             HHHHHHHHHHHTTCTTEEEEEEETTEEEE-EECSBTT-----TTBCCSSTTHHHHHHHHH-HHHTTEECEEET-------
T ss_pred             HHHHHHHHHHHhcCCCeEEEEEEEEEEEE-EEecCcc-----ccccccchHHHHHHHHHH-HHHCCeEEecCC-------
Confidence            33344444555556677888888876554 2321100     000000    02334444 456799999852       


Q ss_pred             CceEEEEe--cCCcCcHHHHHHHHHHHHHHHHHH
Q 009517          499 TWHFRCTI--LPQEDKIPAIVTRLTDFHKNFMDK  530 (533)
Q Consensus       499 ~~~iRis~--~~~~e~i~~~~~~l~~~l~~~~~~  530 (533)
                       +++||++  ..+++++++++++|+++++++.++
T Consensus       420 -~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~  452 (459)
T 4a6r_A          420 -DHIVSAPPLVMTRAEVDEMLAVAERCLEEFEQT  452 (459)
T ss_dssp             -TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence             3899996  489999999999999999887654

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=99.98  E-value=5.4e-31  Score=271.96  Aligned_cols=321  Identities=11%  Similarity=0.033  Sum_probs=232.7

Q ss_pred             cCCCCHHHHHHHHHHHhcCCCCCccccCCC--cccHHHHHHHHHHHHhhcCCCCCCCC-EEEcCChHHHHHHHHHHhccC
Q 009517          137 QGLFSADSIERAWQILDQIPGRATGAYSHS--QGIKGLRDTIAAGIEARDGFPADPND-IFLTDGASPAVHMMMQLLIRS  213 (533)
Q Consensus       137 ~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~--~G~~~lr~aia~~~~~~~g~~~~~~~-i~~t~G~~~al~~~~~~l~~~  213 (533)
                      |..+++++++++.+.+.       ..|.+.  ....++++.+++++    |  .+.++ |++++|+++++..+++.++ +
T Consensus        21 p~~~~~~v~~a~~~~~~-------~~~~~~~~~~~~~~~~~la~~~----~--~~~~~~v~~~~sgt~al~~~~~~~~-~   86 (411)
T 3nnk_A           21 PINADPRVLRAMSSQLI-------GQYDPAMTHYMNEVMALYRGVF----R--TENRWTMLVDGTSRAGIEAILVSAI-R   86 (411)
T ss_dssp             CCCCCHHHHHHHTSCCC-------CTTCHHHHHHHHHHHHHHHHHH----T--CCCSEEEEEESCHHHHHHHHHHHHC-C
T ss_pred             CCCCCHHHHHHhhcccc-------ccccHHHHHHHHHHHHHHHHHh----C--CCCCcEEEECCCcHHHHHHHHHHhc-C
Confidence            44457777777654321       122211  12345555555555    4  33444 7888999999999999998 8


Q ss_pred             CCCeEEEcCCcCcc--hHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHH
Q 009517          214 ENDGILCPIPQYPL--YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEEN  291 (533)
Q Consensus       214 ~gd~Vlv~~p~~~~--~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~  291 (533)
                      +||+|+++.|+|++  +...++..|.+++.++++.  ++.+|+++|++++++.     ++++|++++|+||||.+.+   
T Consensus        87 ~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---  156 (411)
T 3nnk_A           87 PGDKVLVPVFGRFGHLLCEIARRCRAEVHTIEVPW--GEVFTPDQVEDAVKRI-----RPRLLLTVQGDTSTTMLQP---  156 (411)
T ss_dssp             TTCEEEEEECSHHHHHHHHHHHHTTCEEEEEECCT--TCCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---
T ss_pred             CCCEEEEecCCchHHHHHHHHHHcCCeEEEEecCC--CCCCCHHHHHHHHhhC-----CCeEEEEeCCCCCcceecc---
Confidence            99999999999987  8888999999999999854  5678999999999875     7999999999999999998   


Q ss_pred             HHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHH
Q 009517          292 QRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAE  371 (533)
Q Consensus       292 l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~  371 (533)
                      +++|+++|++||+++|+||++.....    + ..+    .      .....+++.|++|++.|  +.++||+++   +++
T Consensus       157 l~~i~~l~~~~~~~li~Dea~~~~~~----~-~~~----~------~~~~d~~~~s~~K~l~~--~~g~g~~~~---~~~  216 (411)
T 3nnk_A          157 LAELGEICRRYDALFYTDATASLGGN----P-LET----D------VWGLDAVSAGMQKCLGG--PSGTSPITL---SAR  216 (411)
T ss_dssp             CTTHHHHHHHHTCEEEEECTTTBTTB----C-CCT----T------TTTCSEEECCSTTTTCC--CSSEEEEEE---CHH
T ss_pred             HHHHHHHHHHcCCEEEEECCcccCCc----c-cch----h------ccCCcEEEecCccccCC--CCceEEEEE---CHH
Confidence            88999999999999999999864221    1 111    0      11123789999998645  446899998   999


Q ss_pred             HHHHHHHhh------------------------------------h-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHH
Q 009517          372 VREQIYKVA------------------------------------S-VNLCSNISGQILASLVMSPPKVGDESYESYCAE  414 (533)
Q Consensus       372 ~~~~l~~~~------------------------------------~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~  414 (533)
                      +++.+....                                    . ..++++..++.++..+++          ...++
T Consensus       217 ~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~----------~~~~~  286 (411)
T 3nnk_A          217 MEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECAR----------LILQE  286 (411)
T ss_dssp             HHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHH----------HHHHH
T ss_pred             HHHHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHH----------HHHHh
Confidence            998887543                                    0 123456666666666553          12233


Q ss_pred             -HHHHHHHHHHHHHHHHHHHhcCCCceEecCCc---eeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcC
Q 009517          415 -RDGILSSLARRAKTLEDAFNSLEGITCNKAEG---AMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPG  490 (533)
Q Consensus       415 -~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~g---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg  490 (533)
                       +++++++++++++++.+.|+++ |+.+..+.+   +.++++.+  |.+         . +...++..+++++||.+.||
T Consensus       287 g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~--~~~---------~-~~~~l~~~l~~~~gi~v~~g  353 (411)
T 3nnk_A          287 GLDYGIARHKLHGDALVKGIQAM-GLETFGDLKHKMNNVLGVVI--PQG---------I-NGDQARKLMLEDFGIEIGTS  353 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHT-TCCBCSCGGGBCSSEEEEEC--CTT---------C-CHHHHHHHHHHHHSEEEEEC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHc-CCEeCCCcccccccEEEEEC--CCC---------C-CHHHHHHHHHHhcCeEEeCc
Confidence             6778889999999999999998 888776554   45566444  211         1 24455556666669999998


Q ss_pred             CCCCCCCCCceEEEEe-c--CCcCcHHHHHHHHHHHHHHH
Q 009517          491 SGFGQVPGTWHFRCTI-L--PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       491 ~~f~~~~g~~~iRis~-~--~~~e~i~~~~~~l~~~l~~~  527 (533)
                      ....   +.++|||++ .  .+++++++++++|+++++++
T Consensus       354 ~~~~---~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~  390 (411)
T 3nnk_A          354 FGPL---HGKVWRIGTMGYNARKDCVMTTLSALEAVLNYL  390 (411)
T ss_dssp             CGGG---TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred             cCCC---CCCEEEEeCccCcCCHHHHHHHHHHHHHHHHHc
Confidence            4332   234999998 5  47889999999999998864

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=99.98  E-value=4e-31  Score=270.04  Aligned_cols=326  Identities=13%  Similarity=0.097  Sum_probs=234.3

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCC----CcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhc---cC
Q 009517          141 SADSIERAWQILDQIPGRATGAYSH----SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI---RS  213 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~----~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~---~~  213 (533)
                      |+.+++++.+.+.+........|..    ..+..+++++++++++      .++++|++|+|+++|+..+++.+.   .+
T Consensus        13 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g------~~~~~v~~~~g~t~a~~~~~~~l~~~~~~   86 (382)
T 4eb5_A           13 DERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVN------GGGGTVVFTSGATEANNLAIIGYAMRNAR   86 (382)
T ss_dssp             CHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHT------CTTEEEEEESSHHHHHHHHHHHHHHHHGG
T ss_pred             CHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhC------CCCCeEEEcCchHHHHHHHHHHHHhhccC
Confidence            7999999998887532211112432    2346777777777764      456799999999999999999885   14


Q ss_pred             CCCeEEEcCCcCcchHHHHHH---hCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHH
Q 009517          214 ENDGILCPIPQYPLYSASIAL---HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE  290 (533)
Q Consensus       214 ~gd~Vlv~~p~~~~~~~~~~~---~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~  290 (533)
                      +||+|++++|+|+.+...+..   .|++++.+++++  ++.+|+++|++++++      ++++|++++|+||||.+++  
T Consensus        87 ~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~--  156 (382)
T 4eb5_A           87 KGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGK--YGEVDVSFIDQKLRD------DTILVSVQHANNEIGTIQP--  156 (382)
T ss_dssp             GCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCT--TSCBCHHHHHHHCCT------TEEEEECCSBCTTTCBBCC--
T ss_pred             CCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCC--CCccCHHHHHHHhcC------CCeEEEEeccCCCccccCC--
Confidence            899999999999988777654   699999999874  457999999999876      7999999999999999999  


Q ss_pred             HHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCH
Q 009517          291 NQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSA  370 (533)
Q Consensus       291 ~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~  370 (533)
                       +++|+++|++||++ |+||+|..    +..+ .++..    +   ..+   +++.|+||.+ |++|  +||+++   ++
T Consensus       157 -l~~i~~l~~~~~~~-i~D~a~~~----g~~~-~~~~~----~---~~d---i~~~s~sK~~-g~~g--~G~~~~---~~  213 (382)
T 4eb5_A          157 -VEEISEVLAGKAAL-HIDATASV----GQIE-VDVEK----I---GAD---MLTISSNDIY-GPKG--VGALWI---RK  213 (382)
T ss_dssp             -HHHHHHHHTTSSEE-EEECTTTB----TTBC-CCHHH----H---TCS---EEEEETGGGT-CCSS--CEEEEE---ET
T ss_pred             -HHHHHHHHHHCCCE-EEEcchhc----CCcc-cCccc----c---CCC---EEEeehHHhc-CCCc--eEEEEE---cc
Confidence             78999999999999 99999983    2211 22222    1   234   7899999986 7666  688887   44


Q ss_pred             HH-HHHHHH----hhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecC
Q 009517          371 EV-REQIYK----VAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKA  444 (533)
Q Consensus       371 ~~-~~~l~~----~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~  444 (533)
                      +. +..+..    ... ..++++...+.++..+++          .+.+.+++++++++++++++.+.|+++||+.+..+
T Consensus       214 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~----------~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~  283 (382)
T 4eb5_A          214 EAKLQPVILGGGQENGLRSGSENVPSIVGFGKAAE----------ITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGH  283 (382)
T ss_dssp             TCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSC
T ss_pred             ccccCceecCCCccccccCCCccHHHHHHHHHHHH----------HHHHhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCC
Confidence            32 111100    011 224456666666655553          12234677888899999999999999888888766


Q ss_pred             Cc---eeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCC----------------CCCceEEEE
Q 009517          445 EG---AMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQV----------------PGTWHFRCT  505 (533)
Q Consensus       445 ~g---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~----------------~g~~~iRis  505 (533)
                      .+   +.++++.++  .          . +...++. .|.++||.+.||..|...                .+.++|||+
T Consensus       284 ~~~~~~~~~~~~~~--~----------~-~~~~~~~-~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~  349 (382)
T 4eb5_A          284 PEKRLPNNVNVRFS--Y----------I-EGESIVL-SLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLT  349 (382)
T ss_dssp             SSSBCTTEEEEEET--T----------S-CHHHHHH-HHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEE
T ss_pred             cccCCCCEEEEEeC--C----------c-CHHHHHH-HHHHCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEE
Confidence            42   323444343  1          1 2334444 455789999999876421                124599999


Q ss_pred             ec--CCcCcHHHHHHHHHHHHHHHHH
Q 009517          506 IL--PQEDKIPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       506 ~~--~~~e~i~~~~~~l~~~l~~~~~  529 (533)
                      ++  .+++++++++++|+++++++.+
T Consensus       350 ~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (382)
T 4eb5_A          350 LGRYNTDEDVDRLLEVLPGVIERLRS  375 (382)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            97  6889999999999999988775

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=99.98  E-value=7.2e-32  Score=275.21  Aligned_cols=306  Identities=14%  Similarity=0.176  Sum_probs=223.3

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHh--cc---CCC
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL--IR---SEN  215 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l--~~---~~g  215 (533)
                      |+.+.+++.+.+.+... ....| +..+..+|++++++++    |  . +++|++|+|+++|+..+++.+  ..   ++|
T Consensus        46 ~~~v~~a~~~~~~~~~~-~~~~y-~~~~~~~l~~~la~~~----g--~-~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~g  116 (375)
T 2eh6_A           46 YPKLTEALKEQVEKLLH-VSNLY-ENPWQEELAHKLVKHF----W--T-EGKVFFANSGTESVEAAIKLARKYWRDKGKN  116 (375)
T ss_dssp             CHHHHHHHHHHHHHCSC-CCTTB-CCHHHHHHHHHHHHTS----S--S-CEEEEEESSHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHHHHhccc-cCccc-CCHHHHHHHHHHHhhc----C--C-CCeEEEeCchHHHHHHHHHHHHHHhccCCCC
Confidence            78899999888865321 12357 4456889999999885    4  3 389999999999999999753  22   467


Q ss_pred             -CeEEEcCCcCcchHHHHHHhCCe-------------EEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCC
Q 009517          216 -DGILCPIPQYPLYSASIALHGGT-------------LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGN  281 (533)
Q Consensus       216 -d~Vlv~~p~~~~~~~~~~~~g~~-------------~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~N  281 (533)
                       |+|++++|+|+.+...+...+..             +..++.       .|+++|++++++      ++++|++++|+|
T Consensus       117 ~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~------~~~~v~~~~~~~  183 (375)
T 2eh6_A          117 KWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKL-------NDIDSVYKLLDE------ETAGIIIEVIQG  183 (375)
T ss_dssp             CCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECT-------TCHHHHHTTCCT------TEEEEEECSEET
T ss_pred             CCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCC-------chHHHHHHHhcC------CeEEEEEeCccC
Confidence             99999999999987766555432             222221       489999998875      799999999999


Q ss_pred             CCccC-CCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCee
Q 009517          282 PTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRG  360 (533)
Q Consensus       282 PtG~~-~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~ri  360 (533)
                      |||.+ .+.+++++|+++|++||+++|+||+|.+|.+.+.  ..++..+  +.   .+|     +.||||.+ + +|+|+
T Consensus       184 ~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~--~~---~~d-----~~s~SK~~-~-~g~~~  249 (375)
T 2eh6_A          184 EGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGE--FYAYQHF--NL---KPD-----VIALAKGL-G-GGVPI  249 (375)
T ss_dssp             TTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSGGGGG--TC---CCS-----EEEECGGG-G-TTSCC
T ss_pred             CCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc--chhhhhc--CC---CCC-----EEEEcccc-c-CCCCe
Confidence            99998 5789999999999999999999999998655432  1122111  11   245     23889999 5 59999


Q ss_pred             EEEEEecCCHHHHHHHHHhh-hccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 009517          361 GYMEVTGFSAEVREQIYKVA-SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGI  439 (533)
Q Consensus       361 G~v~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~  439 (533)
                      ||+++   ++++++.+.... ..+++.+++.+.++.++|+              ..+...++++++++++.+.|+++ +.
T Consensus       250 G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--------------~~~~~~~~~~~~~~~l~~~L~~~-~~  311 (375)
T 2eh6_A          250 GAILA---REEVAQSFTPGSHGSTFGGNPLACRAGTVVVD--------------EVEKLLPHVREVGNYFKEKLKEL-GK  311 (375)
T ss_dssp             EEEEE---EHHHHTTCCTTSCCCSSTTCHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHT-TS
T ss_pred             EEEEE---cHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH-hc
Confidence            99998   788877765532 2456778888888877763              11256777888899999999887 43


Q ss_pred             eEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHH
Q 009517          440 TCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIV  517 (533)
Q Consensus       440 ~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~  517 (533)
                      ...++. ++++|++++.              +...++..+ .++||.+.|+.       .+++||++.  .+++++++++
T Consensus       312 ~~~~~~-g~~~~~~~~~--------------~~~~~~~~l-~~~gi~~~~~~-------~~~iRi~~~~~~~~~~i~~~~  368 (375)
T 2eh6_A          312 GKVKGR-GLMLGLELER--------------ECKDYVLKA-LEKGLLINCTA-------GKVLRFLPPLIIQKEHIDRAI  368 (375)
T ss_dssp             SEEEEE-TTEEEEECSS--------------CCHHHHHHH-HHTTEECEEET-------TTEEEECCCTTCCHHHHHHHH
T ss_pred             CCceEE-EEEEEEEEcC--------------cHHHHHHHH-HHCCCEEecCC-------CCEEEEECCCCCCHHHHHHHH
Confidence            444444 4567765541              123344444 46899999852       238999975  7888999999


Q ss_pred             HHHHHH
Q 009517          518 TRLTDF  523 (533)
Q Consensus       518 ~~l~~~  523 (533)
                      ++|+++
T Consensus       369 ~~l~~~  374 (375)
T 2eh6_A          369 SVLREI  374 (375)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999875

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=99.98  E-value=6.8e-31  Score=269.38  Aligned_cols=325  Identities=11%  Similarity=0.031  Sum_probs=231.9

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCC------
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSE------  214 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~------  214 (533)
                      ++.+++++.+.+....    ..|....|..++++++++++.+.+|  .++++|++|+|+++|+..+++.+. .+      
T Consensus        43 ~~~v~~a~~~~~~~~~----~~~~~~~~~~~~~~~l~~~la~~~~--~~~~~i~~~~ggt~a~~~~~~~~~-~~~~~~~~  115 (397)
T 3f9t_A           43 LPITRKIVDIFLETNL----GDPGLFKGTKLLEEKAVALLGSLLN--NKDAYGHIVSGGTEANLMALRCIK-NIWREKRR  115 (397)
T ss_dssp             CTHHHHHHHHHTTCCT----TSGGGBHHHHHHHHHHHHHHHHHTT--CTTCEEEEESCHHHHHHHHHHHHH-HHHHHHHH
T ss_pred             cHHHHHHHHHHHhhcC----CCcccChhHHHHHHHHHHHHHHHhC--CCCCCEEEecCcHHHHHHHHHHHH-HHHHhhhh
Confidence            5788888888876532    2222222567777778888877777  567899999999999999999987 45      


Q ss_pred             -------CCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCC
Q 009517          215 -------NDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVL  287 (533)
Q Consensus       215 -------gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~  287 (533)
                             ||+|+++.|+|+.+...++..|.+++.+++++  ++.+|+++|++++++.     ++++|++++|+||||.+.
T Consensus       116 ~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~  188 (397)
T 3f9t_A          116 KGLSKNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIKE--DYTIDEKFVKDAVEDY-----DVDGIIGIAGTTELGTID  188 (397)
T ss_dssp             TTCCCCSSCEEEEETTCCTHHHHHHHHHTCEEEEECBCT--TSSBCHHHHHHHHHHS-----CCCEEEEEBSCTTTCCBC
T ss_pred             hcccCCCCeEEEECCcchhHHHHHHHHcCceeEEEeeCC--CCcCCHHHHHHHHhhc-----CCeEEEEECCCCCCCCCC
Confidence                   89999999999999999999999999999875  4689999999999873     588999999999999998


Q ss_pred             CHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHH--HhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEE
Q 009517          288 AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKV--SRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV  365 (533)
Q Consensus       288 s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~  365 (533)
                      +   +++|+++|++||+++|+||+|.++.+........+..+  ...+   .. ...+++.|++|.+ + +|.|+||+++
T Consensus       189 ~---l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~s~~K~~-~-~~~~~g~~~~  259 (397)
T 3f9t_A          189 N---IEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDF---SL-GVDSITIDPHKMG-H-CPIPSGGILF  259 (397)
T ss_dssp             C---HHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSG---GG-TCSEEECCTTTTT-C-CCSSCEEEEE
T ss_pred             C---HHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccc---cc-cCCeEEEcccccc-C-CCCCceEEEE
Confidence            8   88999999999999999999988654221100000000  0000   01 1237789999976 3 5889999988


Q ss_pred             ecCCHHHHHHHHHhhhc-c-----------ccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009517          366 TGFSAEVREQIYKVASV-N-----------LCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAF  433 (533)
Q Consensus       366 ~~~~~~~~~~l~~~~~~-~-----------~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L  433 (533)
                        .++.+.+.+...... .           .+.+.+++.++...+.            ....+++.++++++++++.+.|
T Consensus       260 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~------------~~~~~~~~~~~~~~~~~l~~~L  325 (397)
T 3f9t_A          260 --KDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLG------------REGQRKIVNECMENTLYLYKKL  325 (397)
T ss_dssp             --SSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --eCHHHHHhhccCCccccCCCccccccccccchHHHHHHHHHHHh------------HHHHHHHHHHHHHHHHHHHHHH
Confidence              244454443221110 0           1124455555554441            2345667778889999999999


Q ss_pred             hcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcC
Q 009517          434 NSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQED  511 (533)
Q Consensus       434 ~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e  511 (533)
                      +++ |+.++.+..+.++|+.+.               ....+. +.|.++||.+.||..      .+++||++.  .+++
T Consensus       326 ~~~-g~~~~~~~~~~~~~~~~~---------------~~~~~~-~~l~~~gi~v~~~~~------~~~~Ri~~~~~~~~e  382 (397)
T 3f9t_A          326 KEN-NFKPVIEPILNIVAIEDE---------------DYKEVC-KKLRDRGIYVSVCNC------VKALRIVVMPHIKRE  382 (397)
T ss_dssp             HHT-TCCBSSCCSSSEEEEECT---------------THHHHH-HHHHHTTCBCEECSS------SSEEEEECCTTCCHH
T ss_pred             HHC-CCEEEcCCCccEEEEEeC---------------CHHHHH-HHHHhCCeEEeccCC------CCEEEEEEcCCCCHH
Confidence            998 887654444445554333               123334 445567999998753      239999997  6889


Q ss_pred             cHHHHHHHHHHHHH
Q 009517          512 KIPAIVTRLTDFHK  525 (533)
Q Consensus       512 ~i~~~~~~l~~~l~  525 (533)
                      ++++++++|+++++
T Consensus       383 ~i~~~~~~l~~~l~  396 (397)
T 3f9t_A          383 HIDNFIEILNSIKR  396 (397)
T ss_dssp             HHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhhC
Confidence            99999999998765

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=99.98  E-value=1.3e-31  Score=278.84  Aligned_cols=339  Identities=13%  Similarity=0.100  Sum_probs=224.2

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc-CCCCeEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-SENDGIL  219 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~Vl  219 (533)
                      |+++++++.+++.+... ....|     ..+++.++++.+.+.++  .++++|++|+|+++|+..+++.++. ..+++|+
T Consensus        61 ~p~v~~a~~~~~~~~~~-~~~~~-----~~~~~~~l~~~la~~~~--~~~~~v~~~~gg~ea~~~a~~~~~~~~~~~~vi  132 (433)
T 1zod_A           61 HPEIVSVIGEYAGKLDH-LFSEM-----LSRPVVDLATRLANITP--PGLDRALLLSTGAESNEAAIRMAKLVTGKYEIV  132 (433)
T ss_dssp             CHHHHHHHHHHHHHCCC-CCTTC-----CCHHHHHHHHHHHHHSC--TTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEE
T ss_pred             CHHHHHHHHHHHHhCcc-ccccc-----CCHHHHHHHHHHHHhCC--CCcCEEEEeCchHHHHHHHHHHHHHhhCCCeEE
Confidence            68999999998876311 11122     23455555555555555  4578999999999999999987641 1357999


Q ss_pred             EcCCcCcchHHHHHHh--------------CCeEEEEecCCCCCCC--------CCHHHHHHHHHHHHhcCCCeeEEEEe
Q 009517          220 CPIPQYPLYSASIALH--------------GGTLVPYYLDEATGWG--------LETSEVKKQLEAAKAKGITVRALVVI  277 (533)
Q Consensus       220 v~~p~~~~~~~~~~~~--------------g~~~~~v~~~~~~~~~--------ld~~~l~~~i~~~~~~g~~~~~iil~  277 (533)
                      +++|+|+++.......              |...+.++......|+        +|+++|++++++.  ...++++|+++
T Consensus       133 ~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~--~~~~~~~vi~~  210 (433)
T 1zod_A          133 GFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQ--SSGNLAAFIAE  210 (433)
T ss_dssp             EETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHH--CCSCEEEEEEC
T ss_pred             EECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhc--CCCCeEEEEEc
Confidence            9999999876544432              3333333321111122        4699999999753  11256666554


Q ss_pred             CCCCCCcc-CCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCC
Q 009517          278 NPGNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGEC  356 (533)
Q Consensus       278 ~p~NPtG~-~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~  356 (533)
                      ..+||||. +++++++++|+++|++||+++|+||+|++|.+.+.  ...+...  .+   .++     +.||||++ |. 
T Consensus       211 p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~--~~~~~~~--~~---~~d-----i~s~sK~~-~~-  276 (433)
T 1zod_A          211 PILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGT--MFACQRD--GV---TPD-----ILTLSKTL-GA-  276 (433)
T ss_dssp             SEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSTHHHH--TC---CCS-----EEEECHHH-HT-
T ss_pred             cccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCch--HhHHhhc--CC---CCC-----EEEecccc-cC-
Confidence            44689995 67899999999999999999999999999766542  2222111  22   355     45899999 54 


Q ss_pred             CCeeEEEEEecCCHHHHHHHHHhh--h-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009517          357 GKRGGYMEVTGFSAEVREQIYKVA--S-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAF  433 (533)
Q Consensus       357 G~riG~v~~~~~~~~~~~~l~~~~--~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L  433 (533)
                      |+|+||+++   ++++++.+....  . .+++++++++.++.++|+.           .+. +.+.++++++++++++.|
T Consensus       277 G~~ig~~~~---~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~aal~~-----------~~~-~~~~~~~~~~~~~l~~~l  341 (433)
T 1zod_A          277 GLPLAAIVT---SAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDV-----------VQR-DGLVARANVMGDRLRRGL  341 (433)
T ss_dssp             TSSCEEEEE---CHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHH-----------HHH-TTHHHHHHHHHHHHHHHH
T ss_pred             CCCeeEEEE---hHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHH-----------HHh-CCHHHHHHHHHHHHHHHH
Confidence            999999998   899998887632  1 5677899999988887741           111 234556666677777776


Q ss_pred             hcC----CCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEe--c
Q 009517          434 NSL----EGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTI--L  507 (533)
Q Consensus       434 ~~~----~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~--~  507 (533)
                      +++    +.+..+++.|.| +|+++.....    ...........++..++ ++||.+.||..|+ .  .+++||++  .
T Consensus       342 ~~l~~~~~~~~~~~~~g~~-~~i~~~~~~~----~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~~-~--~~~lRi~~~~~  412 (433)
T 1zod_A          342 LDLMERFDCIGDVRGRGLL-LGVEIVKDRR----TKEPADGLGAKITRECM-NLGLSMNIVQLPG-M--GGVFRIAPPLT  412 (433)
T ss_dssp             HHHHHHCTTEEEEEEETTE-EEEEEEEETT----TTEECTTHHHHHHHHHH-HTTEECCEECCTT-S--CCEEEECCCTT
T ss_pred             HHHHHhCCCeEEEEEEEEE-EEEEEecCcc----ccCCChHHHHHHHHHHH-HCCCeEeccCCCC-C--CCEEEEECCcC
Confidence            653    455566676654 5655431000    00000011334454544 6899999998775 2  23999986  4


Q ss_pred             CCcCcHHHHHHHHHHHHHHH
Q 009517          508 PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       508 ~~~e~i~~~~~~l~~~l~~~  527 (533)
                      .++++|++++++|+++++++
T Consensus       413 ~t~~~i~~~l~~l~~~l~~~  432 (433)
T 1zod_A          413 VSEDEIDLGLSLLGQAIERA  432 (433)
T ss_dssp             CCHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHh
Confidence            88999999999999988764

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=99.98  E-value=2.4e-30  Score=264.03  Aligned_cols=299  Identities=12%  Similarity=0.089  Sum_probs=206.3

Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHH---HHHHhCCeEEEEecCCC
Q 009517          171 GLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA---SIALHGGTLVPYYLDEA  247 (533)
Q Consensus       171 ~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~---~~~~~g~~~~~v~~~~~  247 (533)
                      .+.+.+++++.+.+|.+ +++++++++|+++++..+++.+   +||+|+++.|+|+++..   .+...|++++.+     
T Consensus        58 ~~~~~~~~~~a~~~g~~-~~~~~~~~~ggt~a~~~~~~~~---~gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v-----  128 (374)
T 2aeu_A           58 YFAEKVNEYGLKHLGGD-ENDKCVGFNRTSSAILATILAL---KPKKVIHYLPELPGHPSIERSCKIVNAKYFES-----  128 (374)
T ss_dssp             HHHHHHHHHHHHHHTCC-TTEEEEEESSHHHHHHHHHHHH---CCSEEEEECSSSSCCTHHHHHHHHTTCEEEEE-----
T ss_pred             HHHHHHHHHHHHHhCCC-CcceEEEEcChHHHHHHHHHhC---CCCEEEEecCCCCccHHHHHHHHHcCcEEEEe-----
Confidence            44566666665556643 3578999999999999999977   79999999998887544   667789998887     


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCCeeE-EEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccH
Q 009517          248 TGWGLETSEVKKQLEAAKAKGITVRA-LVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSF  326 (533)
Q Consensus       248 ~~~~ld~~~l~~~i~~~~~~g~~~~~-iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~  326 (533)
                          .|+++++++ ++      ++++ |++++||||||.  +..++++|+++|++||+++|+||+|..+....... .+.
T Consensus       129 ----~d~~~l~~~-~~------~~~~~v~~~~p~nptG~--~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~-~~~  194 (374)
T 2aeu_A          129 ----DKVGEILNK-ID------KDTLVIITGSTMDLKVI--ELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQ-PPA  194 (374)
T ss_dssp             ----SCHHHHHTT-CC------TTEEEEEECBCTTSCBC--CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTC-CCH
T ss_pred             ----CCHHHHHhc-CC------CccEEEEEccCCCCCCC--CcccHHHHHHHHHHcCCEEEEECCccccccccccc-CCc
Confidence                278888876 33      7899 999999999997  77889999999999999999999998753100000 111


Q ss_pred             HHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCC
Q 009517          327 KKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGD  405 (533)
Q Consensus       327 ~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~  405 (533)
                      ..    +   ..+   +++.|+||++   +|+|+||+++   ++++++.+..... ...+++++.+.++..+|+...   
T Consensus       195 ~~----~---~~d---i~~~S~sK~l---~g~~~G~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~---  255 (374)
T 2aeu_A          195 LK----L---GAD---LVVTSTDKLM---EGPRGGLLAG---KKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFN---  255 (374)
T ss_dssp             HH----H---TCS---EEEEETTSSS---SSCSCEEEEE---EHHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCC---
T ss_pred             cc----c---CCc---EEEecCcccc---cCcceEEEEE---CHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHh---
Confidence            11    1   234   7789999986   3789999998   8899998887665 345678888888888775321   


Q ss_pred             hhHHHHHHHHHHHHHHHH----HHHHHHHHHHhcC---CCceE-ecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHH
Q 009517          406 ESYESYCAERDGILSSLA----RRAKTLEDAFNSL---EGITC-NKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCR  477 (533)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~----~~~~~l~~~L~~~---~g~~~-~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (533)
                            .+.+++..+..+    ++++.+.+.|..+   +|+.+ ..+.|.++.|.++  +... +      ..++..++.
T Consensus       256 ------~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~~~~~~~--~~~~-~------~~~~~~~~~  320 (374)
T 2aeu_A          256 ------LERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYK--DDTI-N------IKKLIEIGF  320 (374)
T ss_dssp             ------HHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEES--SHHH-H------HHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCceEEEEeecc--cccc-c------ccchHHHHH
Confidence                  011111221111    2256666666664   36665 4566666666432  2210 0      001233566


Q ss_pred             HHHHccceEEEcCCCCCCCCCCceEEEEecC---CcCcHHHHHHHHHHHHHHHH
Q 009517          478 RLLNATGIVLVPGSGFGQVPGTWHFRCTILP---QEDKIPAIVTRLTDFHKNFM  528 (533)
Q Consensus       478 ~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~---~~e~i~~~~~~l~~~l~~~~  528 (533)
                      ++++++||.+.||..|.  .+.+++||+++.   .+.+++++++.|+++++++.
T Consensus       321 ~ll~~~gV~v~~g~~~~--~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~~~~  372 (374)
T 2aeu_A          321 NLLKNYGIITITVAGMP--GASKSLRIDLTSRDAERIDDNYIIKAIVESIKMAF  372 (374)
T ss_dssp             HHHHHHCEECSTTSSSC--SSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHhCCEEEecCCCCC--CCCCeEEEEcCCchHHHHHHHHHHHHHHHHHHHHh
Confidence            78888999999998874  234489999962   23347777777777776653

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=99.98  E-value=1.3e-30  Score=268.88  Aligned_cols=352  Identities=13%  Similarity=0.063  Sum_probs=245.2

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      +.....+...+..+         +|+|+.|.+..                               |+.+++++.+++.+.
T Consensus        11 i~~~~~~~~~~~~~---------~i~~~~~~~~~-------------------------------~~~v~~a~~~~~~~~   50 (407)
T 2dkj_A           11 LFELIALEEKRQRE---------GLELIASENFV-------------------------------SKQVREAVGSVLTNK   50 (407)
T ss_dssp             HHHHHHHHHHHHHT---------SEECCTTCCCC-------------------------------CHHHHHHHTSGGGGC
T ss_pred             HHHHHHHHHHHhhc---------ceeeccCCCCC-------------------------------CHHHHHHHHhhhhcC
Confidence            55556666655556         89999888653                               788999988887642


Q ss_pred             CCCCccccCCCc---ccHH--HHHHHH-HHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcch-
Q 009517          156 PGRATGAYSHSQ---GIKG--LRDTIA-AGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLY-  228 (533)
Q Consensus       156 ~~~~~~~Y~~~~---G~~~--lr~aia-~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~-  228 (533)
                      .   ...|++..   |.+.  ++++++ +.+.+.+|  .++++|++++|+ +|+..+++.++ ++||+|++++|+|+.+ 
T Consensus        51 ~---~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g--~~~~~i~~~sGt-~a~~~~~~~~~-~~gd~Vl~~~~~~~~~~  123 (407)
T 2dkj_A           51 Y---AEGYPGARYYGGCEVIDRVESLAIERAKALFG--AAWANVQPHSGS-QANMAVYMALM-EPGDTLMGMDLAAGGHL  123 (407)
T ss_dssp             C---CCEETTEESSSCCHHHHHHHHHHHHHHHHHHT--CSEEECCCSSHH-HHHHHHHHHHC-CTTCEEEEECGGGTCCG
T ss_pred             c---ccCCCcccccCCchHHHHHHHHHHHHHHHHhC--CCcceEEecchH-HHHHHHHHHhc-CCCCEEEEecccccCcc
Confidence            1   24565432   4443  444322 34544455  345556667765 59999999997 8999999999999988 


Q ss_pred             --HHHHHHhCC--eEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCC
Q 009517          229 --SASIALHGG--TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGL  304 (533)
Q Consensus       229 --~~~~~~~g~--~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~  304 (533)
                        ...+...|.  .++++++++ .++.+|++++++++++.     ++++|++++|+||  .+.+   +++|.++|++||+
T Consensus       124 ~~~~~~~~~g~~~~~~~~~~~~-~~~~~d~~~l~~~l~~~-----~~~~v~~~~p~~~--~~~~---l~~i~~l~~~~~~  192 (407)
T 2dkj_A          124 THGSRVNFSGKLYKVVSYGVRP-DTELIDLEEVRRLALEH-----RPKVIVAGASAYP--RFWD---FKAFREIADEVGA  192 (407)
T ss_dssp             GGTCTTSHHHHHSEEEEECCCT-TTSSCCHHHHHHHHHHH-----CCSEEEECCSSCC--SCCC---HHHHHHHHHHHTC
T ss_pred             chHHHHHhcCceEEEEecCCCc-ccCccCHHHHHHHHhhc-----CCeEEEEeccccC--CCCC---HHHHHHHHHHcCC
Confidence              345555566  444444332 36789999999999854     6899999999998  5555   8999999999999


Q ss_pred             EEEEcccccc-ccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCC-HHHHHHHHHhhh-
Q 009517          305 VLLADEVYQE-NVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFS-AEVREQIYKVAS-  381 (533)
Q Consensus       305 ~lI~De~y~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~-~~~~~~l~~~~~-  381 (533)
                      ++|+||+|.. +.+.+...  +.  +  +    ..   .+++.||||++   +|+|+||+++   + +++++.+..... 
T Consensus       193 ~li~Dea~~~g~~~~~~~~--~~--~--~----~~---di~~~s~sK~l---~g~~~G~~~~---~~~~~~~~l~~~~~~  253 (407)
T 2dkj_A          193 YLVVDMAHFAGLVAAGLHP--NP--L--P----YA---HVVTSTTHKTL---RGPRGGLILS---NDPELGKRIDKLIFP  253 (407)
T ss_dssp             EEEEECTTTHHHHHTTCSC--CC--T--T----TC---SEEEEESSGGG---CCCSCEEEEE---SCHHHHHHHHHHHTT
T ss_pred             EEEEEccccccccccCccC--Cc--c--c----cc---cEEEEeccccC---CCCCceEEEE---CCHHHHHHHHhhhcc
Confidence            9999999987 55544211  10  0  0    12   37899999976   4889999998   7 899988877653 


Q ss_pred             -ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEec-CCceeEEecccCCCHH
Q 009517          382 -VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNK-AEGAMYLFPRIQLPEK  459 (533)
Q Consensus       382 -~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~gg~~~~~~~~~~~~  459 (533)
                       ...++++....++.++++.       .  ..+++++++++++++++++.+.|+++ |+.+.. +.++.++|+.++..  
T Consensus       254 ~~~~~~~~~~~~a~~~al~~-------~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~--  321 (407)
T 2dkj_A          254 GIQGGPLEHVIAGKAVAFFE-------A--LQPEFKEYSRLVVENAKRLAEELARR-GYRIVTGGTDNHLFLVDLRPK--  321 (407)
T ss_dssp             TTCSSCCHHHHHHHHHHHHH-------H--HSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGG--
T ss_pred             cccCCCcHHHHHHHHHHHHH-------H--HHhhHHHHHHHHHHHHHHHHHHHHhC-CceeecCCCCceEEEEECccc--
Confidence             2234445444455555521       0  01445778888999999999999998 888875 35677778655410  


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCC---CCCCceEEEEec------CCcCcHHHHHHHHHHHHHH
Q 009517          460 AIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ---VPGTWHFRCTIL------PQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~---~~g~~~iRis~~------~~~e~i~~~~~~l~~~l~~  526 (533)
                              +. +...+. +.|.++||.+.||..|..   ....+++||++.      .+++++++++++|++++++
T Consensus       322 --------~~-~~~~~~-~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~  387 (407)
T 2dkj_A          322 --------GL-TGKEAE-ERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE  387 (407)
T ss_dssp             --------TC-CHHHHH-HHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred             --------CC-CHHHHH-HHHHHcCceecCCcCccccccccCCCceeeecccccccCCCHHHHHHHHHHHHHHHhc
Confidence                    01 233333 456779999999986510   122348999994      7899999999999999887

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=99.98  E-value=1.6e-31  Score=275.65  Aligned_cols=317  Identities=12%  Similarity=0.156  Sum_probs=226.6

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC-------
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS-------  213 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~-------  213 (533)
                      ++++++++.+++.+... ....|+ .....++++.+++++    |    .++|++|+|+++|+..+++.++ .       
T Consensus        57 ~p~v~~a~~~~~~~~~~-~~~~~~-~~~~~~l~~~la~~~----~----~~~v~~~~gg~~a~~~al~~~~-~~~~~~~~  125 (406)
T 4adb_A           57 HPELREALNEQASKFWH-TGNGYT-NEPVLRLAKKLIDAT----F----ADRVFFCNSGAEANEAALKLAR-KFAHDRYG  125 (406)
T ss_dssp             CHHHHHHHHHHHTTCSC-CCTTSC-CHHHHHHHHHHHHHS----S----CSEEEEESSHHHHHHHHHHHHH-HHHHHHTC
T ss_pred             CHHHHHHHHHHHHhccc-ccCCcC-CHHHHHHHHHHHhhC----C----CCeEEEeCcHHHHHHHHHHHHH-HHHHhcCC
Confidence            68899999998876322 112232 222455555555553    3    4599999999999999999886 3       


Q ss_pred             CC-CeEEEcCCcCcchHHHHHHhCC-------------eEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCC
Q 009517          214 EN-DGILCPIPQYPLYSASIALHGG-------------TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP  279 (533)
Q Consensus       214 ~g-d~Vlv~~p~~~~~~~~~~~~g~-------------~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p  279 (533)
                      +| |+|++++|+|+++...+...+.             .+..++.       .|+++|++++++      ++++|+++ |
T Consensus       126 ~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~------~~~~v~~~-p  191 (406)
T 4adb_A          126 SHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAY-------NDINSASALIDD------STCAVIVE-P  191 (406)
T ss_dssp             TTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECT-------TCHHHHHTTCST------TEEEEEEC-S
T ss_pred             CCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCC-------CcHHHHHHHhcC------CeEEEEEe-C
Confidence            56 9999999999998766665554             3333332       379999998875      79999888 9


Q ss_pred             CCCCccCC--CHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCC
Q 009517          280 GNPTGQVL--AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG  357 (533)
Q Consensus       280 ~NPtG~~~--s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G  357 (533)
                      +||||.++  +.+++++|+++|++||+++|+||+|.+|.+.+.  ..++..  .++   .++     +.||||++ + +|
T Consensus       192 ~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~--~~~~~~--~~~---~~d-----~~t~sK~~-~-~G  257 (406)
T 4adb_A          192 IQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGE--LYAYMH--YGV---TPD-----LLTTAKAL-G-GG  257 (406)
T ss_dssp             EETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SSHHHH--HTC---CCS-----EEEECGGG-G-TT
T ss_pred             CcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccch--hHHHHh--cCC---CCC-----EEEechhh-c-CC
Confidence            99999988  999999999999999999999999998877653  222211  122   345     23789999 6 89


Q ss_pred             CeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 009517          358 KRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL  436 (533)
Q Consensus       358 ~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  436 (533)
                      +|+||+++   ++++++.+..... .+++++++++.++.++|+.           .+. +.+.++++++++++.+.|+++
T Consensus       258 ~r~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-----------~~~-~~~~~~~~~~~~~l~~~l~~~  322 (406)
T 4adb_A          258 FPVGALLA---TEECARVMTVGTHGTTYGGNPLASAVAGKVLEL-----------INT-PEMLNGVKQRHDWFVERLNTI  322 (406)
T ss_dssp             SCCEEEEE---CHHHHHTCCTTSSCCSSTTCHHHHHHHHHHHHH-----------HSS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEE---cHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHH-----------HHh-cCHHHHHHHHHHHHHHHHHHH
Confidence            99999998   9999888776543 6688899999998887741           111 456677777888888887764


Q ss_pred             ----CCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEe--cCCc
Q 009517          437 ----EGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTI--LPQE  510 (533)
Q Consensus       437 ----~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~--~~~~  510 (533)
                          +.+....+. ++++|+.+..+.          ......++.. |.++||.+.|+.       .+++||++  ..++
T Consensus       323 ~~~~~~~~~~~~~-g~~~~~~~~~~~----------~~~~~~~~~~-l~~~gi~v~~~~-------~~~iRi~~~~~~~~  383 (406)
T 4adb_A          323 NHRYGLFSEVRGL-GLLIGCVLNADY----------AGQAKQISQE-AAKAGVMVLIAG-------GNVVRFAPALNVSE  383 (406)
T ss_dssp             HHHHCCEEEEEEE-TTEEEEEECTTT----------TTCHHHHHHH-HHHTTEECEESS-------TTEEEECCCTTCCH
T ss_pred             HHhCCCceEEEEE-EEEEEEEEeCCc----------HHHHHHHHHH-HHHCCcEEeecC-------CCeEEEECCCCCCH
Confidence                223323333 445665554210          0123444545 455799999853       33899965  4889


Q ss_pred             CcHHHHHHHHHHHHHHHHHH
Q 009517          511 DKIPAIVTRLTDFHKNFMDK  530 (533)
Q Consensus       511 e~i~~~~~~l~~~l~~~~~~  530 (533)
                      +++++++++|+++++++.++
T Consensus       384 e~i~~~~~~l~~~l~~~~~~  403 (406)
T 4adb_A          384 EEVTTGLDRFAAACEHFVSR  403 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999987654

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=99.98  E-value=9e-31  Score=267.07  Aligned_cols=329  Identities=13%  Similarity=0.068  Sum_probs=227.2

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc---CCCCe
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR---SENDG  217 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~---~~gd~  217 (533)
                      |+.+++++.+.+.+........|....+..++.+.+.+.+.+.+|  .++++|++|+|+++++..+++.+..   ++||+
T Consensus        13 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~~i~~~~g~~~a~~~~~~~~~~~~~~~gd~   90 (382)
T 4hvk_A           13 DERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVN--GGGGTVVFTSGATEANNLAIIGYAMRNARKGKH   90 (382)
T ss_dssp             CHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTT--CTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCE
T ss_pred             CHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcC--CCcCeEEEECCchHHHHHHHHHhhhhhcCCCCE
Confidence            788999999888753221111222222233444444444444445  5678899999999999999998852   48999


Q ss_pred             EEEcCCcCcchHHHHHH---hCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHH
Q 009517          218 ILCPIPQYPLYSASIAL---HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRA  294 (533)
Q Consensus       218 Vlv~~p~~~~~~~~~~~---~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~  294 (533)
                      |+++.|+|+.+...+..   .|++++.+++++  ++.+|+++|++++++      ++++|++++|+||||.+++   +++
T Consensus        91 vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---~~~  159 (382)
T 4hvk_A           91 ILVSAVEHMSVINPAKFLQKQGFEVEYIPVGK--YGEVDVSFIDQKLRD------DTILVSVQHANNEIGTIQP---VEE  159 (382)
T ss_dssp             EEEETTCCHHHHHHHHHHHHTTCEEEEECBCT--TSCBCHHHHHHHCCT------TEEEEECCSBCTTTCBBCC---HHH
T ss_pred             EEECCCCcHHHHHHHHHHHhcCCEEEEeccCC--CCCcCHHHHHHHhcc------CceEEEEECCCCCceeeCC---HHH
Confidence            99999999998776555   599999999874  458999999999976      7999999999999999999   889


Q ss_pred             HHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHH
Q 009517          295 IVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVRE  374 (533)
Q Consensus       295 i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~  374 (533)
                      |+++|++||+ +|+|++|.....     ..++..    .   ..+   +++.|+||.+ |++|  +|++++   +++.  
T Consensus       160 i~~l~~~~~~-li~D~a~~~~~~-----~~~~~~----~---~~d---~~~~s~~K~~-g~~g--~g~~~~---~~~~--  215 (382)
T 4hvk_A          160 ISEVLAGKAA-LHIDATASVGQI-----EVDVEK----I---GAD---MLTISSNDIY-GPKG--VGALWI---RKEA--  215 (382)
T ss_dssp             HHHHHSSSSE-EEEECTTTBTTB-----CCCHHH----H---TCS---EEEEESGGGT-SCTT--CEEEEE---ETTC--
T ss_pred             HHHHHHHcCE-EEEEhHHhcCCC-----CCCchh----c---CCC---EEEEeHHHhc-CCCc--eEEEEE---cCcc--
Confidence            9999999999 999999874211     112211    1   233   7899999976 6666  566665   3322  


Q ss_pred             HHHHhh-------h-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCc
Q 009517          375 QIYKVA-------S-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEG  446 (533)
Q Consensus       375 ~l~~~~-------~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~g  446 (533)
                      .+....       . ...+++...+.++..++.          ...+.+++++++++++++++.+.|+++||+.+..+.+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~----------~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~  285 (382)
T 4hvk_A          216 KLQPVILGGGQENGLRSGSENVPSIVGFGKAAE----------ITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPE  285 (382)
T ss_dssp             CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSS
T ss_pred             CcCcccccCCCcCccccCCcCHHHHHHHHHHHH----------HHHhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCcc
Confidence            111111       0 134456666666666552          1234567888899999999999999988988876653


Q ss_pred             ---eeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCC----------------CceEEEEec
Q 009517          447 ---AMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPG----------------TWHFRCTIL  507 (533)
Q Consensus       447 ---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g----------------~~~iRis~~  507 (533)
                         +.++++.++  .          . +...+. +.|.++||.+.+|..|+....                .++|||+++
T Consensus       286 ~~~~~~~~~~~~--~----------~-~~~~~~-~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~  351 (382)
T 4hvk_A          286 KRLPNNVNVRFS--Y----------I-EGESIV-LSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLG  351 (382)
T ss_dssp             SBCTTEEEEEET--T----------C-CHHHHH-HHHHHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECC
T ss_pred             ccCCCEEEEEEC--C----------C-CHHHHH-HHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcC
Confidence               223333332  1          1 233333 556678999999988763210                459999997


Q ss_pred             --CCcCcHHHHHHHHHHHHHHHHHH
Q 009517          508 --PQEDKIPAIVTRLTDFHKNFMDK  530 (533)
Q Consensus       508 --~~~e~i~~~~~~l~~~l~~~~~~  530 (533)
                        .+++++++++++|+++++++.+.
T Consensus       352 ~~~t~e~i~~~~~~l~~~~~~~~~~  376 (382)
T 4hvk_A          352 RYNTDEDVDRLLEVLPGVIERLRSM  376 (382)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhh
Confidence              67889999999999999987653

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=99.98  E-value=3.4e-31  Score=268.75  Aligned_cols=319  Identities=13%  Similarity=0.086  Sum_probs=231.8

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCC--CcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSH--SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI  218 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~--~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~V  218 (533)
                      |+++++++.+.+.       +.|+.  ..+..++|++++++++    .+.++++|++|+|+++|+..+++.++ .+||+|
T Consensus        16 ~~~v~~a~~~~~~-------~~~~~~~~~~~~~l~~~la~~~g----~~~~~~~v~~~~g~t~a~~~~~~~~~-~~gd~v   83 (366)
T 1m32_A           16 SRTVKEAMLFDSC-------TWDDDYNIGVVEQIRQQLTALAT----ASEGYTSVLLQGSGSYAVEAVLGSAL-GPQDKV   83 (366)
T ss_dssp             CHHHHHTTCCCCC-------TTSHHHHTTTHHHHHHHHHHHHC----SSSSEEEEEEESCHHHHHHHHHHHSC-CTTCCE
T ss_pred             CHHHHHHHhhhhc-------CCCHHHHHHHHHHHHHHHHHHhC----CCCcCcEEEEecChHHHHHHHHHHhc-CCCCeE
Confidence            6778877655321       11221  1568999999999984    12234689999999999999999998 799998


Q ss_pred             EEcC-CcCcc-hHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHH
Q 009517          219 LCPI-PQYPL-YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIV  296 (533)
Q Consensus       219 lv~~-p~~~~-~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~  296 (533)
                      ++++ ++|+. +...+...|.+++.++++.  ++.+|+++|++++++.    +++++|++++|+||||.+++   +++|+
T Consensus        84 i~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~----~~~~~v~~~~~~nptG~~~~---l~~i~  154 (366)
T 1m32_A           84 LIVSNGAYGARMVEMAGLMGIAHHAYDCGE--VARPDVQAIDAILNAD----PTISHIAMVHSETTTGMLNP---IDEVG  154 (366)
T ss_dssp             EEEESSHHHHHHHHHHHHHTCCEEEEECCT--TSCCCHHHHHHHHHHC----TTCCEEEEESEETTTTEECC---HHHHH
T ss_pred             EEEeCCCccHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhcC----CCeEEEEEecccCCcceecC---HHHHH
Confidence            8776 56654 6677788899999999864  4569999999999861    24789999999999999999   88999


Q ss_pred             HHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHH
Q 009517          297 DFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQI  376 (533)
Q Consensus       297 ~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l  376 (533)
                      ++|++||+++|+||+|.....    + .++    ..+   ..+   +++.|+||+++|  +.++||+++   ++++++.+
T Consensus       155 ~l~~~~~~~li~Dea~~~~~~----~-~~~----~~~---~~d---i~~~s~~K~~~~--~~g~G~~~~---~~~~~~~~  214 (366)
T 1m32_A          155 ALAHRYGKTYIVDAMSSFGGI----P-MDI----AAL---HID---YLISSANKCIQG--VPGFAFVIA---REQKLAAC  214 (366)
T ss_dssp             HHHHHHTCEEEEECTTTTTTS----C-CCT----TTT---TCS---EEEEESSSTTCC--CSSEEEEEE---EHHHHTTC
T ss_pred             HHHHHcCCEEEEECCccccCc----C-ccc----ccc---Ccc---EEEecCcccccC--CCceEEEEE---CHHHHHhh
Confidence            999999999999999985322    1 111    111   233   889999998744  345799998   88877655


Q ss_pred             HHhh------------------h-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHH--HHHHHHHHHHHHHHHHHHHhc
Q 009517          377 YKVA------------------S-VNLCSNISGQILASLVMSPPKVGDESYESYCAE--RDGILSSLARRAKTLEDAFNS  435 (533)
Q Consensus       377 ~~~~------------------~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~  435 (533)
                      ....                  . ..++++..++.++.++++          .+.++  +++++++++++++++.+.|++
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~----------~~~~~g~~~~~~~~~~~~~~~l~~~L~~  284 (366)
T 1m32_A          215 KGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALK----------ELAKEGGVAARHQRYQQNQRSLVAGMRA  284 (366)
T ss_dssp             TTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHH----------HHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHH----------HHHHccCHhHHHHHHHHHHHHHHHHHHH
Confidence            3310                  0 124667777777777663          12233  467888899999999999999


Q ss_pred             CCCceEecC---CceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCc
Q 009517          436 LEGITCNKA---EGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQE  510 (533)
Q Consensus       436 ~~g~~~~~~---~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~  510 (533)
                      + |+.+..+   .+++++|+.++...+         . +...+... |.++||.+.||..|+    .+++||+++  .++
T Consensus       285 ~-~~~~~~~~~~~~~~~~~~~~~~~~~---------~-~~~~~~~~-l~~~gi~v~~~~~~~----~~~iRi~~~~~~~~  348 (366)
T 1m32_A          285 L-GFNTLLDDELHSPIITAFYSPEDPQ---------Y-RFSEFYRR-LKEQGFVIYPGKVSQ----SDCFRIGNIGEVYA  348 (366)
T ss_dssp             T-TCCBSSCGGGBCSSEEEEECCCCTT---------C-CHHHHHHH-HHHTTEECEECCCSS----SCEEEEECCSSCCH
T ss_pred             C-CCeeccCchhcCceEEEEEcCccCC---------C-CHHHHHHH-HHHCCEEEECCcCCC----CCEEEEecCCCCCH
Confidence            8 8877654   467677865541000         1 23444444 456799999998773    238999997  578


Q ss_pred             CcHHHHHHHHHHHHHH
Q 009517          511 DKIPAIVTRLTDFHKN  526 (533)
Q Consensus       511 e~i~~~~~~l~~~l~~  526 (533)
                      +++++++++|++++++
T Consensus       349 ~~i~~~~~~l~~~~~~  364 (366)
T 1m32_A          349 ADITALLTAIRTAMYW  364 (366)
T ss_dssp             HHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            8999999999987653

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=99.98  E-value=3.7e-31  Score=271.23  Aligned_cols=323  Identities=10%  Similarity=0.059  Sum_probs=231.7

Q ss_pred             cCCCCHHHHHHHHHHHhcCCCCCccccCC--CcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCC
Q 009517          137 QGLFSADSIERAWQILDQIPGRATGAYSH--SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSE  214 (533)
Q Consensus       137 ~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~--~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~  214 (533)
                      |..+|+.+++++.+.+..       .|.+  .....++++.+++++    |.+ ..++|++|+|+++++..+++.+. ++
T Consensus        31 p~~~~~~v~~a~~~~~~~-------~~~~~~~~~~~~l~~~la~~~----~~~-~~~~v~~~~gg~~al~~~~~~~~-~~   97 (393)
T 3kgw_A           31 PSNLAPRVLAAGSLRMIG-------HMQKEMLQIMEEIKQGIQYVF----QTR-NPLTLVVSGSGHCAMETALFNLL-EP   97 (393)
T ss_dssp             CCCCCHHHHHHTTCCCCC-------TTSHHHHHHHHHHHHHHHHHH----TCC-CSEEEEESCCTTTHHHHHHHHHC-CT
T ss_pred             CCCCCHHHHHHhcccccC-------cccHHHHHHHHHHHHHHHHHh----CCC-CCcEEEEeCCcHHHHHHHHHhcC-CC
Confidence            334478887776543221       1221  223456666666665    422 23469999999999999999998 89


Q ss_pred             CCeEEEcCCcCcc--hHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHH
Q 009517          215 NDGILCPIPQYPL--YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQ  292 (533)
Q Consensus       215 gd~Vlv~~p~~~~--~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l  292 (533)
                      ||+|+++.++|.+  +...+...|.+++.++++..  +.+|+++|++++++.     ++++|++++|+||||.+++   +
T Consensus        98 gd~vl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l  167 (393)
T 3kgw_A           98 GDSFLTGTNGIWGMRAAEIADRIGARVHQMIKKPG--EHYTLQEVEEGLAQH-----KPVLLFLVHGESSTGVVQP---L  167 (393)
T ss_dssp             TCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT--CCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---C
T ss_pred             CCEEEEEeCCchhHHHHHHHHHcCCceEEEeCCCC--CCCCHHHHHHHHhhC-----CCcEEEEeccCCcchhhcc---H
Confidence            9999999988853  36677888999999998754  478999999999875     7899999999999999998   8


Q ss_pred             HHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHH
Q 009517          293 RAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEV  372 (533)
Q Consensus       293 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~  372 (533)
                      ++|.++|++||+++|+||+|.....    + ..+          ......+++.|+||+++|++  ++||+++   ++++
T Consensus       168 ~~i~~l~~~~~~~li~De~~~~g~~----~-~~~----------~~~~~d~~~~s~sK~~~~~~--g~g~~~~---~~~~  227 (393)
T 3kgw_A          168 DGFGELCHRYQCLLLVDSVASLGGV----P-IYM----------DQQGIDIMYSSSQKVLNAPP--GISLISF---NDKA  227 (393)
T ss_dssp             TTHHHHHHHTTCEEEEECTTTTTTS----C-CCT----------TTTTCCEEEEESSSTTCCCS--SCEEEEE---CHHH
T ss_pred             HHHHHHHHHcCCEEEEECCccccCc----c-cch----------hhcCCCEEEecCcccccCCC--ceeEEEE---CHHH
Confidence            8999999999999999999873211    1 110          01112377889999885544  4899998   9999


Q ss_pred             HHHHHHhhh------------------------ccccCChHHHHHHHHHcCCCCCCChhHHHHHH-HHHHHHHHHHHHHH
Q 009517          373 REQIYKVAS------------------------VNLCSNISGQILASLVMSPPKVGDESYESYCA-ERDGILSSLARRAK  427 (533)
Q Consensus       373 ~~~l~~~~~------------------------~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  427 (533)
                      ++.+.....                        ..++++..++.++..+++          ...+ .++++.++++++++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~----------~~~~~~~~~~~~~~~~~~~  297 (393)
T 3kgw_A          228 KYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLA----------LIAEQGLENCWRRHREATA  297 (393)
T ss_dssp             HHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHH----------HHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHH----------HHHHhhHHHHHHHHHHHHH
Confidence            888865321                        123456777766666653          1112 25778888999999


Q ss_pred             HHHHHHhcCCCceEecCC----ceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEE
Q 009517          428 TLEDAFNSLEGITCNKAE----GAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFR  503 (533)
Q Consensus       428 ~l~~~L~~~~g~~~~~~~----gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iR  503 (533)
                      ++.+.|+++ |+.+..+.    .++++|+.++  .+          .+...+...+++++||.+.||..+.   +.++||
T Consensus       298 ~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~--~~----------~~~~~~~~~l~~~~gi~v~~g~~~~---~~~~iR  361 (393)
T 3kgw_A          298 HLHKHLQEM-GLKFFVKDPEIRLPTITTVTVP--AG----------YNWRDIVSYVLDHFSIEISGGLGPT---EERVLR  361 (393)
T ss_dssp             HHHHHHHHT-TCCBSSSSGGGBCSSEEEEECC--TT----------BCHHHHHHHHHHHHCEECBCCCGGG---TTTEEE
T ss_pred             HHHHHHHHc-CCeeccCChhhcCCeEEEEeCC--CC----------CCHHHHHHHHHHhCCEEEeCCcccC---CCCEEE
Confidence            999999998 88776443    2455554432  11          1234555566665599999988653   233999


Q ss_pred             EEe-c--CCcCcHHHHHHHHHHHHHHHH
Q 009517          504 CTI-L--PQEDKIPAIVTRLTDFHKNFM  528 (533)
Q Consensus       504 is~-~--~~~e~i~~~~~~l~~~l~~~~  528 (533)
                      |++ +  .+++++++++++|+++++++.
T Consensus       362 i~~~~~~~~~~~i~~~~~~l~~~l~~~~  389 (393)
T 3kgw_A          362 IGLLGYNATTENVDRVAEALREALQHCP  389 (393)
T ss_dssp             EECCGGGCCHHHHHHHHHHHHHHHHHSC
T ss_pred             EEecccCCCHHHHHHHHHHHHHHHHhhh
Confidence            998 6  488999999999999988754

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=99.98  E-value=5.3e-31  Score=273.25  Aligned_cols=325  Identities=14%  Similarity=0.134  Sum_probs=230.1

Q ss_pred             CHHHHHHHHHHHh--cCCCCC-----ccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc-
Q 009517          141 SADSIERAWQILD--QIPGRA-----TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-  212 (533)
Q Consensus       141 p~~v~~~~~~~~~--~~~~~~-----~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-  212 (533)
                      |+.+++++.+++.  +.....     ...|....+..++++.++++++      .++++|++|+|+++|+..+++++.. 
T Consensus        35 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~------~~~~~v~~~~ggt~a~~~a~~~l~~~  108 (423)
T 3lvm_A           35 DPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVG------ADPREIVFTSGATESDNLAIKGAANF  108 (423)
T ss_dssp             CHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHT------CCGGGEEEESSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcC------CCCCeEEEeCChHHHHHHHHHHHHHh
Confidence            7888888887776  321100     0011112334667777777664      5678999999999999999998861 


Q ss_pred             --CCCCeEEEcCCcCcchHHHHHH---hCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCC
Q 009517          213 --SENDGILCPIPQYPLYSASIAL---HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVL  287 (533)
Q Consensus       213 --~~gd~Vlv~~p~~~~~~~~~~~---~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~  287 (533)
                        .+||+|+++.|+|+.+...+..   .|++++.+++++  ++.+|+++|++++++      ++++|++++|+||||.++
T Consensus       109 ~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~  180 (423)
T 3lvm_A          109 YQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQR--NGIIDLKELEAAMRD------DTILVSIMHVNNEIGVVQ  180 (423)
T ss_dssp             HTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCT--TSCCCHHHHHHHCCT------TEEEEECCSBCTTTCBBC
T ss_pred             hccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCC--CCccCHHHHHHhcCC------CcEEEEEeCCCCCCcccc
Confidence              2799999999999998877744   499999999875  568899999999976      799999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEec
Q 009517          288 AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTG  367 (533)
Q Consensus       288 s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~  367 (533)
                      +   +++|+++|++||++||+||+|.....    + .+.    ..+   ..+   +++.||||.+ |++|  +||+++  
T Consensus       181 ~---l~~i~~l~~~~~~~li~Dea~~~~~~----~-~~~----~~~---~~d---i~~~s~sK~~-g~~g--~G~~~~--  237 (423)
T 3lvm_A          181 D---IAAIGEMCRARGIIYHVDATQSVGKL----P-IDL----SQL---KVD---LMSFSGHKIY-GPKG--IGALYV--  237 (423)
T ss_dssp             C---HHHHHHHHHHHTCEEEEECTTTTTTS----C-CCT----TTS---CCS---EEEEESTTTT-SCSS--CEEEEE--
T ss_pred             C---HHHHHHHHHHcCCEEEEEhhhhcCCC----C-cCh----hhc---CCC---EEEechHHhc-CCCC--eEEEEE--
Confidence            9   88899999999999999999875221    1 111    111   233   7899999976 6566  899988  


Q ss_pred             CCHHHHHHHHHhh--------hccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 009517          368 FSAEVREQIYKVA--------SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGI  439 (533)
Q Consensus       368 ~~~~~~~~l~~~~--------~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~  439 (533)
                       ++++++.+....        ....+++...+.++..++.          ...+++++++++++++++++.+.|++++|+
T Consensus       238 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~----------~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  306 (423)
T 3lvm_A          238 -RRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYR----------IAKEEMATEMERLRGLRNRLWNGIKDIEEV  306 (423)
T ss_dssp             -CBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHTTSTTE
T ss_pred             -eccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence             665554443321        1234556666666655553          122346788889999999999999999899


Q ss_pred             eEecCCc---eeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCC----------------CCc
Q 009517          440 TCNKAEG---AMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVP----------------GTW  500 (533)
Q Consensus       440 ~~~~~~g---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~----------------g~~  500 (533)
                      .+..+.+   +.++++.+..            . +...+. +.|.+  |.+.+|..|....                ..+
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~------------~-~~~~l~-~~l~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~  370 (423)
T 3lvm_A          307 YLNGDLEHGAPNILNVSFNY------------V-EGESLI-MALKD--LAVSSGSACTSASLEPSYVLRALGLNDELAHS  370 (423)
T ss_dssp             EEESCSTTBCTTEEEEEETT------------S-CHHHHH-HHTTT--EECBCCCC-----CCCCHHHHHHTCCHHHHHT
T ss_pred             EEeCCccccCCCeEEEEeCC------------C-CHHHHH-HHHhh--heeccCccccCCCccccHHHHHhCCCccccCc
Confidence            8887653   1122222321            1 233333 44554  9999998765210                035


Q ss_pred             eEEEEec--CCcCcHHHHHHHHHHHHHHHHH
Q 009517          501 HFRCTIL--PQEDKIPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       501 ~iRis~~--~~~e~i~~~~~~l~~~l~~~~~  529 (533)
                      +|||++.  .+++++++++++|+++++++.+
T Consensus       371 ~iRi~~~~~~t~e~i~~~~~~l~~~~~~~~~  401 (423)
T 3lvm_A          371 SIRFSLGRFTTEEEIDYTIELVRKSIGRLRD  401 (423)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence            8999996  6778999999999999988753

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=99.98  E-value=9.6e-31  Score=264.03  Aligned_cols=316  Identities=14%  Similarity=0.062  Sum_probs=231.5

Q ss_pred             CCHHHHHHHHHHHhcCCCCCccccC-CCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeE
Q 009517          140 FSADSIERAWQILDQIPGRATGAYS-HSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI  218 (533)
Q Consensus       140 ~p~~v~~~~~~~~~~~~~~~~~~Y~-~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~V  218 (533)
                      .|+.+++++.+.+..      +.|+ ...+..++|+++++++    |.+.++++|++|+|+++|+..+++.+. +  |+|
T Consensus        11 ~~~~v~~a~~~~~~~------~~~~~~~~~~~~l~~~la~~~----g~~~~~~~v~~t~g~t~a~~~~~~~~~-~--d~v   77 (353)
T 2yrr_A           11 IPERVQKALLRPMRG------HLDPEVLRVNRAIQERLAALF----DPGEGALVAALAGSGSLGMEAGLANLD-R--GPV   77 (353)
T ss_dssp             CCHHHHGGGGSCCCC------TTCHHHHHHHHHHHHHHHHHH----CCCTTCEEEEESSCHHHHHHHHHHTCS-C--CCE
T ss_pred             CCHHHHHHHhccccc------ccCHHHHHHHHHHHHHHHHHh----CCCCCCceEEEcCCcHHHHHHHHHHhc-C--CcE
Confidence            378888777655432      1222 2345678888888886    433346789999999999999999987 4  899


Q ss_pred             EEcCCcCcch--HHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHH
Q 009517          219 LCPIPQYPLY--SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIV  296 (533)
Q Consensus       219 lv~~p~~~~~--~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~  296 (533)
                      ++++|+|+++  ...++..|.+++.+++++  ++.+|+++|++++++.     ++++|++++|+||||.+++   +++|.
T Consensus        78 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~---~~~i~  147 (353)
T 2yrr_A           78 LVLVNGAFSQRVAEMAALHGLDPEVLDFPP--GEPVDPEAVARALKRR-----RYRMVALVHGETSTGVLNP---AEAIG  147 (353)
T ss_dssp             EEEECSHHHHHHHHHHHHTTCCEEEEECCT--TSCCCHHHHHHHHHHS-----CCSEEEEESEETTTTEECC---HHHHH
T ss_pred             EEEcCCCchHHHHHHHHHcCCceEEEeCCC--CCCCCHHHHHHHHHhC-----CCCEEEEEccCCCcceecC---HHHHH
Confidence            9999998875  455677899999999875  4579999999999862     5889999999999999998   78999


Q ss_pred             HHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHH
Q 009517          297 DFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQI  376 (533)
Q Consensus       297 ~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l  376 (533)
                      ++|++||+++|+||+|..    +..+ .++..    +   ..+   +++.|++|++.|++|  +||+++   ++++++.+
T Consensus       148 ~l~~~~~~~li~D~a~~~----~~~~-~~~~~----~---~~d---~~~~s~~K~~~~~~g--~G~~~~---~~~~~~~l  207 (353)
T 2yrr_A          148 ALAKEAGALFFLDAVTTL----GMLP-FSMRA----M---GVD---YAFTGSQKCLSAPPG--LAPIAA---SLEARKAF  207 (353)
T ss_dssp             HHHHHHTCEEEEECTTTT----TTSC-CCHHH----H---TCS---EEECCTTSTTCCCSS--CEEEEE---CHHHHHHC
T ss_pred             HHHHHcCCeEEEEcCccc----cccc-ccccc----c---Cce---EEEecCcccccCCCc--eEEEEE---CHHHHHHh
Confidence            999999999999999953    2111 23222    2   234   778899997756566  699998   88888765


Q ss_pred             H-------------Hhh--h-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCc
Q 009517          377 Y-------------KVA--S-VNLCSNISGQILASLVMSPPKVGDESYESYCAE-RDGILSSLARRAKTLEDAFNSLEGI  439 (533)
Q Consensus       377 ~-------------~~~--~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~g~  439 (533)
                      .             ...  . ..++++...+.++.++++          .+.++ +++++++++++++++.+.|+++ |+
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~----------~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~  276 (353)
T 2yrr_A          208 TGKRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALD----------LVLEEGVAARERRAREVYAWVLEELKAR-GF  276 (353)
T ss_dssp             CCCSCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHH----------HHHHHCHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             ccCCCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHH----------HHHHhhHHHHHHHHHHHHHHHHHHHHHC-CC
Confidence            4             111  1 234567777776666653          12223 5678888999999999999998 88


Q ss_pred             eEecCC--ceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEe-c-CCcCcHH-
Q 009517          440 TCNKAE--GAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTI-L-PQEDKIP-  514 (533)
Q Consensus       440 ~~~~~~--gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~-~-~~~e~i~-  514 (533)
                      ++..+.  +++++|+.++  .+         . +...+... |.++||.+.||..|.. .  +++||++ . .++++++ 
T Consensus       277 ~~~~~~~~~~~~~~~~~~--~~---------~-~~~~~~~~-l~~~gi~v~~g~~~~~-~--~~iRi~~~~~~~~~~~~~  340 (353)
T 2yrr_A          277 RPYPKASPLPTVLVVRPP--EG---------V-DADRLVRA-LYAEGVAVAGGIGPTR-G--QVLRLGLMGEGARREAYQ  340 (353)
T ss_dssp             EESCSSSBCTTEEEEECC--TT---------C-CHHHHHHH-HHHTTEECEECCGGGT-T--TCEEEECSGGGSCHHHHH
T ss_pred             ccccCccCCCeEEEEECC--CC---------C-CHHHHHHH-HHHCCEEEeCCccccC-C--CeEEEecCccCCHHHHHH
Confidence            887664  5666665543  11         1 23444444 5557999999987752 2  3899999 3 7888898 


Q ss_pred             HHHHHHHHHHH
Q 009517          515 AIVTRLTDFHK  525 (533)
Q Consensus       515 ~~~~~l~~~l~  525 (533)
                      +++++|+++++
T Consensus       341 ~~~~~l~~~l~  351 (353)
T 2yrr_A          341 AFLKALDRALA  351 (353)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998875

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=99.97  E-value=1e-30  Score=275.02  Aligned_cols=337  Identities=16%  Similarity=0.115  Sum_probs=237.5

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC------C
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS------E  214 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~------~  214 (533)
                      |+++++++.+++.+.    .+ |....+..+++.++++++.+.++  ...++|++++|+++|++.+++.++..      +
T Consensus        72 ~p~v~~A~~~~l~~~----~~-~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~  144 (476)
T 3i5t_A           72 RREIVDAMAHQAMVL----PY-ASPWYMATSPAARLAEKIATLTP--GDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRP  144 (476)
T ss_dssp             CHHHHHHHHHHHHHC----CC-CCTTTCBCHHHHHHHHHHHTTSS--TTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCT
T ss_pred             CHHHHHHHHHHHHhc----cC-cccCccCCHHHHHHHHHHHhcCC--CCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCC
Confidence            789999999999872    12 22224567888899999988765  34679999999999999999998621      3


Q ss_pred             -CCeEEEcCCcCcchHHHHHHhCCe-------------EEEEe--cCCCCCCCCC--------HHHHHHHHHHHHhcCCC
Q 009517          215 -NDGILCPIPQYPLYSASIALHGGT-------------LVPYY--LDEATGWGLE--------TSEVKKQLEAAKAKGIT  270 (533)
Q Consensus       215 -gd~Vlv~~p~~~~~~~~~~~~g~~-------------~~~v~--~~~~~~~~ld--------~~~l~~~i~~~~~~g~~  270 (533)
                       +++|++.+|+|+++.......+..             +..++  ..... +..|        +++|++.++...  ..+
T Consensus       145 ~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~le~~i~~~~--~~~  221 (476)
T 3i5t_A          145 QKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHA-GNRSQEAFLDDLVQEFEDRIESLG--PDT  221 (476)
T ss_dssp             TCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGC-TTSCHHHHHHHHHHHHHHHHHHHC--GGG
T ss_pred             CCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCccccc-CCCchHHHHHHHHHHHHHHHHhcC--CCC
Confidence             479999999999988766655432             12222  21111 1223        788998887531  126


Q ss_pred             eeEEEEeCCCCCCcc-CCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCC
Q 009517          271 VRALVVINPGNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVS  349 (533)
Q Consensus       271 ~~~iil~~p~NPtG~-~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~S  349 (533)
                      +++|+++.++|++|. +++++++++|+++|++||+++|+||+|++|.+.|.  ...+..    ..+..+|     +.+||
T Consensus       222 ~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~--~~~~~~----~~~v~pd-----i~t~s  290 (476)
T 3i5t_A          222 IAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGE--WFASEK----VFGVVPD-----IITFA  290 (476)
T ss_dssp             EEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SCHHHH----TTCCCCS-----EEEEC
T ss_pred             EEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccC--ceeeec----ccCCCcc-----hhhhh
Confidence            788888888889986 88999999999999999999999999999877653  222210    1122566     44789


Q ss_pred             ccCCCCCC-CeeEEEEEecCCHHHHHHHHHh--------hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHH
Q 009517          350 KGYYGECG-KRGGYMEVTGFSAEVREQIYKV--------ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILS  420 (533)
Q Consensus       350 K~~~gl~G-~riG~v~~~~~~~~~~~~l~~~--------~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~  420 (533)
                      |++ | .| +|+||+++   ++++++.+.+.        ...+++.++++++++.++|+           ..+. +.+.+
T Consensus       291 K~l-~-~G~~plg~v~~---~~~i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~-----------~~~~-~~~~~  353 (476)
T 3i5t_A          291 KGV-T-SGYVPLGGLAI---SEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIE-----------LMER-EGIVD  353 (476)
T ss_dssp             GGG-G-TTSSCCEEEEE---CHHHHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHH-----------HHHH-TTHHH
T ss_pred             hhh-c-CCCcCeEEEEE---CHHHHHHHhcCCcccccccccCCCCcCHHHHHHHHHHHH-----------HHHh-HHHHH
Confidence            999 4 38 99999998   99999988753        23678899999999998874           1111 34566


Q ss_pred             HHHHHHHHHHHHHhcC---CCceEecCCceeEEecccCCCHHHHHHHHhcCCC----ChHHHHHHHHHccceEEEcCCCC
Q 009517          421 SLARRAKTLEDAFNSL---EGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTV----PDAFYCRRLLNATGIVLVPGSGF  493 (533)
Q Consensus       421 ~~~~~~~~l~~~L~~~---~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ll~~~gV~v~pg~~f  493 (533)
                      +++++.+++++.|+++   |.+..+++.|.|+.+ .+......     .....    ....++.. |.++||.+.|.   
T Consensus       354 ~~~~~~~~l~~~L~~l~~~~~v~~v~~~G~~~~i-~~~~~~~~-----~~~~~~~~~~~~~~~~~-l~~~Gv~v~~~---  423 (476)
T 3i5t_A          354 QAREMADYFAAALASLRDLPGVAETRSVGLVGCV-QCLLDPTR-----ADGTAEDKAFTLKIDER-CFELGLIVRPL---  423 (476)
T ss_dssp             HHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEE-EECCC----------CCHHHHHHHHHHHHH-HHHTTEECEEE---
T ss_pred             HHHHHHHHHHHHHHHHhcCCCeEEEEecCceeEE-EEecCccc-----cccccchhHHHHHHHHH-HHHCCCEEEec---
Confidence            6777777777777764   567778888876543 33311100     00000    02234444 45679999982   


Q ss_pred             CCCCCCceEEEEe--cCCcCcHHHHHHHHHHHHHHHHHH
Q 009517          494 GQVPGTWHFRCTI--LPQEDKIPAIVTRLTDFHKNFMDK  530 (533)
Q Consensus       494 ~~~~g~~~iRis~--~~~~e~i~~~~~~l~~~l~~~~~~  530 (533)
                      +     +++||++  ..++++|++++++|+++++++.++
T Consensus       424 g-----~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~~~~  457 (476)
T 3i5t_A          424 G-----DLCVISPPLIISRAQIDEMVAIMRQAITEVSAA  457 (476)
T ss_dssp             T-----TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             C-----CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            1     3899995  589999999999999999987654

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=99.97  E-value=8.6e-31  Score=272.42  Aligned_cols=326  Identities=14%  Similarity=0.123  Sum_probs=224.0

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc--C----C
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR--S----E  214 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--~----~  214 (533)
                      |+++++++.+++..........|+.. ...++++++++++    +  .++++|++|+|+++|+..+++.+..  .    +
T Consensus        61 ~p~v~~a~~~~~~~~~~~~~~~~~~~-~~~~l~~~la~~~----~--~~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~~  133 (429)
T 1s0a_A           61 HPQLNAAMKSQIDAMSHVMFGGITHA-PAIELCRKLVAMT----P--QPLECVFLADSGSVAVEVAMKMALQYWQAKGEA  133 (429)
T ss_dssp             CHHHHHHHHHHHHHCSCCCCSSEECH-HHHHHHHHHHHHS----C--TTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             CHHHHHHHHHHHHhcccccccccCCH-HHHHHHHHHHHhC----C--CCCCEEEEeCCHHHHHHHHHHHHHHHhcccCCC
Confidence            68999999998876321011234332 2355666666554    4  4678999999999999999987531  1    5


Q ss_pred             CCeEEEcCCcCcchHHHHHHh-C-------------CeEEEEecCC---CCCC-CCCHHHHHHHHHHHHhcCCCeeEEEE
Q 009517          215 NDGILCPIPQYPLYSASIALH-G-------------GTLVPYYLDE---ATGW-GLETSEVKKQLEAAKAKGITVRALVV  276 (533)
Q Consensus       215 gd~Vlv~~p~~~~~~~~~~~~-g-------------~~~~~v~~~~---~~~~-~ld~~~l~~~i~~~~~~g~~~~~iil  276 (533)
                      |++|++++|+|+++...+... |             ..+..++...   ...| .+|+++|++++++.   ..++++|++
T Consensus       134 ~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~vi~  210 (429)
T 1s0a_A          134 RQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAH---RHEIAAVII  210 (429)
T ss_dssp             CCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHH---TTTEEEEEE
T ss_pred             CCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhC---CCCEEEEEE
Confidence            899999999999875544322 1             1233444431   1134 48999999999752   125666665


Q ss_pred             eCC-CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCC
Q 009517          277 INP-GNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYG  354 (533)
Q Consensus       277 ~~p-~NPtG~-~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~g  354 (533)
                      +.. +||||. +++++++++|+++|++||+++|+||+|.+|.+.+.  ...+..  ..+   .+|     +.||||.+ +
T Consensus       211 ~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~--~~~~~~--~~~---~~d-----~~t~sK~l-~  277 (429)
T 1s0a_A          211 EPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGK--LFACEH--AEI---APD-----ILCLGKAL-T  277 (429)
T ss_dssp             CSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSGGGG--GTC---CCS-----EEEECGGG-G
T ss_pred             eecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccch--HHHhhh--cCC---CCC-----EEEecccc-c
Confidence            555 799995 66888999999999999999999999998765442  112111  112   355     34799998 5


Q ss_pred             CCC-CeeEEEEEecCCHHHHHHHHHh------hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 009517          355 ECG-KRGGYMEVTGFSAEVREQIYKV------ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAK  427 (533)
Q Consensus       355 l~G-~riG~v~~~~~~~~~~~~l~~~------~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (533)
                       +| +|+||+++   ++++++.+...      ...+++++++++.++.++|+           ..+. +.+.++++++++
T Consensus       278 -~G~~~iG~~~~---~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~-----------~~~~-~~~~~~~~~~~~  341 (429)
T 1s0a_A          278 -GGTMTLSATLT---TREVAETISNGEAGCFMHGPTFMGNPLACAAANASLA-----------ILES-GDWQQQVADIEV  341 (429)
T ss_dssp             -TSSSCCEEEEE---CHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHH-----------HHHT-CHHHHHHHHHHH
T ss_pred             -CCCccceEEEe---CHHHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHH-----------HHHh-CCHHHHHHHHHH
Confidence             48 99999998   88998888763      22567789999999888874           1111 235566777888


Q ss_pred             HHHHHHhcC---CCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEE
Q 009517          428 TLEDAFNSL---EGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRC  504 (533)
Q Consensus       428 ~l~~~L~~~---~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRi  504 (533)
                      ++.+.|+++   |++..+++.|. ++|++++.+            .+...++..++ ++||.+.|+   +     +++||
T Consensus       342 ~l~~~L~~l~~~~~~~~~~~~g~-~~~~~~~~~------------~~~~~l~~~l~-~~Gi~v~~~---~-----~~iRi  399 (429)
T 1s0a_A          342 QLREQLAPARDAEMVADVRVLGA-IGVVETTHP------------VNMAALQKFFV-EQGVWIRPF---G-----KLIYL  399 (429)
T ss_dssp             HHHHHHGGGGGCTTEEEEEEETT-EEEEEESSC------------BCHHHHHHHHH-HTTEECCCB---T-----TEEEE
T ss_pred             HHHHHHHHHhcCCCEEEEEEeeE-EEEEEECCc------------ccHHHHHHHHH-HCCCEEecc---C-----CEEEE
Confidence            888888875   56666666665 567555421            12334444544 689999873   1     38999


Q ss_pred             Ee--cCCcCcHHHHHHHHHHHHHHH
Q 009517          505 TI--LPQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       505 s~--~~~~e~i~~~~~~l~~~l~~~  527 (533)
                      ++  ..+++++++++++|+++++++
T Consensus       400 s~~~~~t~e~i~~~~~~l~~~~~~~  424 (429)
T 1s0a_A          400 MPPYIILPQQLQRLTAAVNRAVQDE  424 (429)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHTSSG
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHHhh
Confidence            96  488999999999999887543

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=99.97  E-value=6e-31  Score=272.77  Aligned_cols=315  Identities=11%  Similarity=0.087  Sum_probs=223.4

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC-------
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS-------  213 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~-------  213 (533)
                      ++++++++.+++.+...     +.. .+..++++++++.+.+.+|    .++|++|+|+++|+..+++.++ .       
T Consensus        75 ~p~v~~ai~~~~~~~~~-----~~~-~~~~~~~~~l~~~la~~~g----~~~v~~~~ggteA~~~al~~~~-~~~~~~~~  143 (420)
T 2pb2_A           75 HPALVEALKSQGETLWH-----TSN-VFTNEPALRLGRKLIDATF----AERVLFMNSGTEANETAFKLAR-HYACVRHS  143 (420)
T ss_dssp             CHHHHHHHHHHHTTCCC-----CCT-TSCCHHHHHHHHHHHHHSS----CSEEEEESSHHHHHHHHHHHHH-HHHHHHTC
T ss_pred             CHHHHHHHHHHHHhccc-----ccC-ccCCHHHHHHHHHHHhhCC----CCeEEEeCCHHHHHHHHHHHHH-HHhhhccC
Confidence            68999999998876321     111 1123455556666655544    5799999999999999999886 4       


Q ss_pred             CC-CeEEEcCCcCcchHHH-HHHhCCe------------EEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCC
Q 009517          214 EN-DGILCPIPQYPLYSAS-IALHGGT------------LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP  279 (533)
Q Consensus       214 ~g-d~Vlv~~p~~~~~~~~-~~~~g~~------------~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p  279 (533)
                      +| ++|++++|+|+++... +...|.+            +..++.       .|+++|++++++      ++++|+++++
T Consensus       144 ~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~le~~i~~------~~~~vi~~p~  210 (420)
T 2pb2_A          144 PFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPF-------NDLHAVKAVMDD------HTCAVVVEPI  210 (420)
T ss_dssp             TTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECT-------TCHHHHHHHCCT------TEEEEEECSE
T ss_pred             CCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecC-------CCHHHHHHHhcc------CceEEEEeCC
Confidence            67 5999999999987544 4444543            444443       279999999875      7999999888


Q ss_pred             CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCC
Q 009517          280 GNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGK  358 (533)
Q Consensus       280 ~NPtG~-~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~  358 (533)
                      +|++|+ +++.+++++|+++|++||+++|+||+|.++.+.|.  ..++..  .++   .+|     +.||||.+ | +|+
T Consensus       211 ~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~--~~~~~~--~~~---~~d-----iit~sK~l-~-~G~  276 (420)
T 2pb2_A          211 QGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGD--LFAYMH--YGV---TPD-----ILTSAKAL-G-GGF  276 (420)
T ss_dssp             ETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SSHHHH--HTC---CCS-----EEEECGGG-G-TTS
T ss_pred             cCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCc--HHHHHh--cCC---CCC-----eEEecccc-c-CCC
Confidence            998884 69999999999999999999999999998776553  222111  122   356     22789999 6 799


Q ss_pred             eeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Q 009517          359 RGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL-  436 (533)
Q Consensus       359 riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-  436 (533)
                      |+||+++   ++++++.+..... .++++++++++++.++|+..           +. +.+.++++++++++.+.|+++ 
T Consensus       277 ~iG~~~~---~~~l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~-----------~~-~~~~~~~~~~~~~l~~~L~~~~  341 (420)
T 2pb2_A          277 PVSAMLT---TQEIASAFHVGSHGSTYGGNPLACAVAGAAFDII-----------NT-PEVLQGIHTKRQQFVQHLQAID  341 (420)
T ss_dssp             CCEEEEE---CHHHHTTCC----CCEECCCHHHHHHHHHHHHHH-----------SS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEE---hHHHHHhhcCCCcCcccCcCHHHHHHHHHHHHHH-----------Hh-ccHHHHHHHHHHHHHHHHHHHH
Confidence            9999998   8888776655322 56788999999988877421           11 345667777788888877664 


Q ss_pred             ---CCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEe--cCCcC
Q 009517          437 ---EGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTI--LPQED  511 (533)
Q Consensus       437 ---~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~--~~~~e  511 (533)
                         +.+..+++.|.| +|+.+..+.         + .+...++..+ .++||.+.|+.       .+++||++  ..+++
T Consensus       342 ~~~~~~~~~~~~g~~-~~v~~~~~~---------~-~~~~~l~~~l-~~~Gi~v~~~~-------~~~iRl~~~~~~t~e  402 (420)
T 2pb2_A          342 EQFDIFSDIRGMGLL-IGAELKPKY---------K-GRARDFLYAG-AEAGVMVLNAG-------ADVMRFAPSLVVEEA  402 (420)
T ss_dssp             HHHCCEEEEEEETTE-EEEEECGGG---------T-TCHHHHHHHH-HHTTEECEESS-------TTEEEECCCTTCCHH
T ss_pred             hcCCCeEEEEecceE-EEEEECCCc---------h-HHHHHHHHHH-HHCCCEEEeCC-------CCEEEEECCCCCCHH
Confidence               445556666654 554443110         0 0234444454 45899999863       23899996  48899


Q ss_pred             cHHHHHHHHHHHHHHH
Q 009517          512 KIPAIVTRLTDFHKNF  527 (533)
Q Consensus       512 ~i~~~~~~l~~~l~~~  527 (533)
                      ++++++++|+++++++
T Consensus       403 ei~~~~~~l~~~l~~~  418 (420)
T 2pb2_A          403 DIHEGMQRFAQAVGKV  418 (420)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998765

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=99.97  E-value=9.2e-31  Score=274.92  Aligned_cols=338  Identities=15%  Similarity=0.127  Sum_probs=233.6

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc-------C
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-------S  213 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-------~  213 (533)
                      |+++++++.+++.+.    ...|....+..+.+.++++.+.+..+  ...++|++++|+++|++.+++.++.       .
T Consensus        73 ~p~v~~A~~~~~~~~----~~~~~~~~~~~~~~~~lae~l~~~~~--~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~  146 (472)
T 3hmu_A           73 RDELAEVAARQMREL----PYYNTFFKTTHVPAIALAQKLAELAP--GDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQP  146 (472)
T ss_dssp             CHHHHHHHHHHHHHC----SCCCSSSSEECHHHHHHHHHHHHHSC--TTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCT
T ss_pred             CHHHHHHHHHHHHhc----cccccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            689999999999873    22344444455667777777776654  4567999999999999999999872       1


Q ss_pred             CCCeEEEcCCcCcchHHHHHHhCC------------eEEEEecCC--C-CCCCCC--------HHHHHHHHHHHHhcCCC
Q 009517          214 ENDGILCPIPQYPLYSASIALHGG------------TLVPYYLDE--A-TGWGLE--------TSEVKKQLEAAKAKGIT  270 (533)
Q Consensus       214 ~gd~Vlv~~p~~~~~~~~~~~~g~------------~~~~v~~~~--~-~~~~ld--------~~~l~~~i~~~~~~g~~  270 (533)
                      ++++|++.+|+|+++.......+.            .+..++...  . +++ .|        +++|++.|+....  .+
T Consensus       147 ~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~~~~~~~le~~i~~~~~--~~  223 (472)
T 3hmu_A          147 EKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEFGLARARELEEAILELGE--NR  223 (472)
T ss_dssp             TCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCG--GG
T ss_pred             CCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHhcCC--CC
Confidence            358999999999998877666544            233444221  0 111 34        7888888875310  15


Q ss_pred             eeEEEEeCCCCCCccCC-CHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCC
Q 009517          271 VRALVVINPGNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVS  349 (533)
Q Consensus       271 ~~~iil~~p~NPtG~~~-s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~S  349 (533)
                      +++|+++.++|++|.+. +++.+++|+++|++||+++|+||+|++|.+.|.  ...+..  .++   .+|     +.+||
T Consensus       224 ~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~--~~a~~~--~~v---~pd-----i~t~s  291 (472)
T 3hmu_A          224 VAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGN--WFGTQT--MGI---RPH-----IMTIA  291 (472)
T ss_dssp             EEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SCHHHH--HTC---CCS-----EEEEC
T ss_pred             EEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCc--cchhHH--hCC---CCc-----eeeec
Confidence            77777777788888754 888999999999999999999999999876653  222211  122   566     44789


Q ss_pred             ccCCCCCCCeeEEEEEecCCHHHHHHHHHh--h-hccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHH-HH
Q 009517          350 KGYYGECGKRGGYMEVTGFSAEVREQIYKV--A-SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLA-RR  425 (533)
Q Consensus       350 K~~~gl~G~riG~v~~~~~~~~~~~~l~~~--~-~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-~~  425 (533)
                      |++ +..|+|+||+++   ++++++.+...  . ..+++.++++++++.++|+           ..+. +.+.++++ ++
T Consensus       292 K~l-~gg~~plG~v~~---~~~i~~~~~~~~~~~~~t~~~np~a~aAa~aaL~-----------~~~~-~~~~~~~~~~~  355 (472)
T 3hmu_A          292 KGL-SSGYAPIGGSIV---CDEVAHVIGKDEFNHGYTYSGHPVAAAVALENLR-----------ILEE-ENILDHVRNVA  355 (472)
T ss_dssp             GGG-TTTSSCCEEEEE---EHHHHHHHTTSCBCCCCTTTTCHHHHHHHHHHHH-----------HHHH-TTHHHHHHHTH
T ss_pred             hhh-hcCCcceEEEEE---CHHHHHhcccCCccccCCCCCCHHHHHHHHHHHH-----------HHHH-hHHHHHHHHHH
Confidence            998 433499999998   99999988321  2 2578899999999988874           1111 34555566 66


Q ss_pred             HHHHHHHHhcC---CCceEecCCceeEEecccCCCHHHHHHHHhcCCCC-----hHHHHHHHHHccceEEEcCCCCCCCC
Q 009517          426 AKTLEDAFNSL---EGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVP-----DAFYCRRLLNATGIVLVPGSGFGQVP  497 (533)
Q Consensus       426 ~~~l~~~L~~~---~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ll~~~gV~v~pg~~f~~~~  497 (533)
                      .+++++.|+++   |++..+++.|.|+.+ .+.....     .......     ...++ +.|.++||++.|+.      
T Consensus       356 ~~~l~~~L~~l~~~~~v~~vr~~G~~~~i-~~~~~~~-----~~~~~~~~~~~~~~~~~-~~l~~~Gv~v~~~g------  422 (472)
T 3hmu_A          356 APYLKEKWEALTDHPLVGEAKIVGMMASI-ALTPNKA-----SRAKFASEPGTIGYICR-ERCFANNLIMRHVG------  422 (472)
T ss_dssp             HHHHHHHHHGGGGSTTEEEEEEETTEEEE-EECSCGG-----GTCCBSSCTTHHHHHHH-HHHHHTTBCCEEET------
T ss_pred             HHHHHHHHHHHhcCCCeEEEEecCceEEE-EEecCcc-----ccccccchhHHHHHHHH-HHHHHCCcEEEecC------
Confidence            66777766554   667778888877654 2321100     0000000     22334 44556899999852      


Q ss_pred             CCceEEEEe--cCCcCcHHHHHHHHHHHHHHHHHH
Q 009517          498 GTWHFRCTI--LPQEDKIPAIVTRLTDFHKNFMDK  530 (533)
Q Consensus       498 g~~~iRis~--~~~~e~i~~~~~~l~~~l~~~~~~  530 (533)
                        +++||++  ..++++|++++++|+++++++.++
T Consensus       423 --~~iRi~p~~~~t~e~i~~~l~~l~~~l~~~~~~  455 (472)
T 3hmu_A          423 --DRMIISPPLVITPAEIDEMFVRIRKSLDEAQAE  455 (472)
T ss_dssp             --TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence              3999995  589999999999999999887644

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=99.97  E-value=1.9e-31  Score=274.49  Aligned_cols=311  Identities=13%  Similarity=0.150  Sum_probs=221.2

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC------C
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS------E  214 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~------~  214 (533)
                      |+++++++.+++..... ....|     ..++++++++.+.+.+|    .++|++|+|+++|+..+++.+. .      +
T Consensus        58 ~~~v~~a~~~~~~~~~~-~~~~~-----~~~~~~~l~~~la~~~g----~~~v~~~~gg~~a~~~al~~~~-~~~~~~~~  126 (397)
T 2ord_A           58 HPRLVEAIKDQAEKLIH-CSNLF-----WNRPQMELAELLSKNTF----GGKVFFANTGTEANEAAIKIAR-KYGKKKSE  126 (397)
T ss_dssp             CHHHHHHHHHHHHHCSC-CCTTS-----EEHHHHHHHHHHHHTTT----SCEEEEESSHHHHHHHHHHHHH-HHHHHHCT
T ss_pred             CHHHHHHHHHHHHhccc-Ccccc-----CCHHHHHHHHHHHHhcC----CCeEEEeCCHHHHHHHHHHHHH-HHhhcCCC
Confidence            68899999888876321 11113     12344444444444444    5799999999999999999885 3      5


Q ss_pred             -CCeEEEcCCcCcch-HHHHHHhCCe------------EEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCC
Q 009517          215 -NDGILCPIPQYPLY-SASIALHGGT------------LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPG  280 (533)
Q Consensus       215 -gd~Vlv~~p~~~~~-~~~~~~~g~~------------~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~  280 (533)
                       +++|++++|+|++. ...+...|.+            ++.++.       .|+++|++++++      ++++|++++|+
T Consensus       127 ~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~l~~~l~~------~~~~v~~~~~~  193 (397)
T 2ord_A          127 KKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEF-------NNVEDLRRKMSE------DVCAVFLEPIQ  193 (397)
T ss_dssp             TCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECT-------TCHHHHHHHCCT------TEEEEEECSEE
T ss_pred             CCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecC-------CCHHHHHHHhhc------CeEEEEEeccc
Confidence             47899999999774 4467777776            666664       279999998875      79999999999


Q ss_pred             CCCcc-CCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCe
Q 009517          281 NPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKR  359 (533)
Q Consensus       281 NPtG~-~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~r  359 (533)
                      ||||. +++.+++++|+++|++||+++|+||+|.++.+.+.  ..++..+  +.   .+|     +.||||.+ + +|+|
T Consensus       194 nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~--~~~~~~~--~~---~~d-----~~s~sK~~-~-~G~r  259 (397)
T 2ord_A          194 GESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGK--LFAYQKY--GV---VPD-----VLTTAKGL-G-GGVP  259 (397)
T ss_dssp             CTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSHHHHH--TC---CCS-----EEEECGGG-G-TTSC
T ss_pred             CCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCcc--chhhhhh--CC---CCC-----eeeecccc-C-CCcC
Confidence            99999 99999999999999999999999999998766543  2222222  11   245     23889999 6 7999


Q ss_pred             eEEEEEecCCHHHHHHHHHhh-hccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--
Q 009517          360 GGYMEVTGFSAEVREQIYKVA-SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL--  436 (533)
Q Consensus       360 iG~v~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--  436 (533)
                      +||+++   +++++ .+.... ..+++++++++.++.++|+..           +. ++++++++++++++.+.|+++  
T Consensus       260 ~G~~~~---~~~~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~~-----------~~-~~~~~~~~~~~~~l~~~L~~~~~  323 (397)
T 2ord_A          260 IGAVIV---NERAN-VLEPGDHGTTFGGNPLACRAGVTVIKEL-----------TK-EGFLEEVEEKGNYLMKKLQEMKE  323 (397)
T ss_dssp             CEEEEE---CSTTC-CCCTTSSCCSSTTCHHHHHHHHHHHHHH-----------TS-TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEE---chHhc-ccCCCCcCCCCCCCHHHHHHHHHHHHHH-----------Hh-CCHHHHHHHHHHHHHHHHHHHHH
Confidence            999998   66666 554322 256778999998888877421           11 345667778888888888764  


Q ss_pred             --CCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCc
Q 009517          437 --EGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDK  512 (533)
Q Consensus       437 --~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~  512 (533)
                        +.+...++.|. |+|++++.+            .+...++..+ .++||.+.||.       .+++||++.  .++++
T Consensus       324 ~~~~~~~~~~~g~-~~~~~~~~~------------~~~~~l~~~l-~~~gi~v~~~~-------~~~iRis~~~~~~~e~  382 (397)
T 2ord_A          324 EYDVVADVRGMGL-MIGIQFREE------------VSNREVATKC-FENKLLVVPAG-------NNTIRFLPPLTVEYGE  382 (397)
T ss_dssp             HCTTEEEEEEETT-EEEEEECTT------------SCHHHHHHHH-HHTTEECEEET-------TTEEEECCCTTCCHHH
T ss_pred             hCCceEEEEEEeE-EEEEEECCh------------HHHHHHHHHH-HHCCCEEccCC-------CCEEEEECCcCCCHHH
Confidence              33333455554 556555411            1234445454 45899999862       338999964  78999


Q ss_pred             HHHHHHHHHHHHHH
Q 009517          513 IPAIVTRLTDFHKN  526 (533)
Q Consensus       513 i~~~~~~l~~~l~~  526 (533)
                      +++++++|++++++
T Consensus       383 i~~~~~~l~~~l~~  396 (397)
T 2ord_A          383 IDLAVETLKKVLQG  396 (397)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999988763

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=99.97  E-value=7.9e-30  Score=263.62  Aligned_cols=299  Identities=10%  Similarity=0.095  Sum_probs=219.6

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCEE-EcCChHHHHHHHHHHhccCCCCeEEEcCCcCcc--hHHHHHHhCCeEEEEecCC
Q 009517          170 KGLRDTIAAGIEARDGFPADPNDIF-LTDGASPAVHMMMQLLIRSENDGILCPIPQYPL--YSASIALHGGTLVPYYLDE  246 (533)
Q Consensus       170 ~~lr~aia~~~~~~~g~~~~~~~i~-~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~--~~~~~~~~g~~~~~v~~~~  246 (533)
                      .++.+++.+.+.+.+|  .+.++++ +++|+++++..+++.+. ++||+|++++|+|++  +...++..|++++.++++.
T Consensus        43 ~~~~~~l~~~la~~~g--~~~~~~~~~~~s~t~al~~~~~~l~-~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~  119 (416)
T 3isl_A           43 TGIMNETMEMLRELFQ--TKNRWAYPIDGTSRAGIEAVLASVI-EPEDDVLIPIYGRFGYLLTEIAERYGANVHMLECEW  119 (416)
T ss_dssp             HHHHHHHHHHHHHHTT--CCCSEEEEEESCHHHHHHHHHHHHC-CTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT
T ss_pred             HHHHHHHHHHHHHHhC--CCCCcEEEecCcHHHHHHHHHHHhc-CCCCEEEEecCCcccHHHHHHHHhcCCeeEEEecCC
Confidence            3344444444444445  4456565 88899999999999998 899999999999987  7778888999999999875


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccH
Q 009517          247 ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSF  326 (533)
Q Consensus       247 ~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~  326 (533)
                      +  +.+|+++|++++++.     ++++|++++|+||||.+++   +++|+++|++||+++|+|++|.....    + .++
T Consensus       120 ~--~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~----~-~~~  184 (416)
T 3isl_A          120 G--TVFDPEDIIREIKKV-----KPKIVAMVHGETSTGRIHP---LKAIGEACRTEDALFIVDAVATIGGC----E-VKV  184 (416)
T ss_dssp             T--CCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CHHHHHHHHHTTCEEEEECTTTTTTS----C-CCT
T ss_pred             C--CCCCHHHHHHHHhhC-----CCcEEEEEccCCCCceecC---HHHHHHHHHHcCCEEEEECCccccCC----C-cch
Confidence            4  478999999999853     7899999999999999999   88999999999999999999874221    1 111


Q ss_pred             HHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhh--------------------------
Q 009517          327 KKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA--------------------------  380 (533)
Q Consensus       327 ~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~--------------------------  380 (533)
                          ..+   ..+   +++.|++|++.|  +.++|++++   ++++++.+....                          
T Consensus       185 ----~~~---~~d---~~~~s~~K~l~g--~~g~g~~~~---~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~  249 (416)
T 3isl_A          185 ----DEW---KID---AAIGGTQKCLSV--PSGMAPITY---NERVADVIAARKKVERGIATQADRAALSGNRPITSNYF  249 (416)
T ss_dssp             ----TTT---TCS---EEECCSSSTTCC--CSSEEEEEE---CHHHHHHHHTC------------------CCCCSCSTT
T ss_pred             ----hhc---CCC---EEEecCccccCC--CCCeEEEEE---CHHHHHHhhccccccccccccccchhccCCCCCCcccc
Confidence                011   123   789999998645  456899998   999988876421                          


Q ss_pred             ----------h---ccccCChHHHHHHHHHcCCCCCCChhHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCceEecCCc
Q 009517          381 ----------S---VNLCSNISGQILASLVMSPPKVGDESYESYCAE-RDGILSSLARRAKTLEDAFNSLEGITCNKAEG  446 (533)
Q Consensus       381 ----------~---~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~g  446 (533)
                                .   ..++.+...+.++.++++          ...++ +++++++++++++++.+.|+++ |+.+..+.+
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~----------~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~  318 (416)
T 3isl_A          250 DLSQLEDYWSERRLNHHTEATTMLYALREGVR----------LVLEEGLETRFERHRHHEAALAAGIKAM-GLRLFGDDS  318 (416)
T ss_dssp             CHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHH----------HHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBCSCGG
T ss_pred             chHHHHhhhcccCCCCCCCCHHHHHHHHHHHH----------HHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCEeccCcc
Confidence                      1   123456666666666553          12233 6788889999999999999997 888877654


Q ss_pred             ---eeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEe-c-CCcCc-HHHHHHHH
Q 009517          447 ---AMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTI-L-PQEDK-IPAIVTRL  520 (533)
Q Consensus       447 ---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~-~-~~~e~-i~~~~~~l  520 (533)
                         +.++++.+  |.+          .+...++..+++++||.+.||...   .+.++|||++ . .++++ +++++++|
T Consensus       319 ~~~~~~~~~~~--~~~----------~~~~~l~~~L~~~~gi~v~~g~~~---~~~~~iRi~~~~~~~~~e~i~~~~~~l  383 (416)
T 3isl_A          319 CKMPVVTCVEI--PGG----------IDGESVRDMLLAQFGIEIASSFGP---LAGKIWRIGTMGYSCRKENVLFVLAGL  383 (416)
T ss_dssp             GBCTTEEEEEC--CTT----------CCHHHHHHHHHHHHCEECBCCCST---TTTTEEEEECCGGGCSHHHHHHHHHHH
T ss_pred             ccCCcEEEEeC--CCC----------CCHHHHHHHHHHhCCEEEecCCCC---CCCCEEEEecccCCCcHHHHHHHHHHH
Confidence               44555443  211          124455556666569999998743   2334999999 3 55666 99999999


Q ss_pred             HHHHHHH
Q 009517          521 TDFHKNF  527 (533)
Q Consensus       521 ~~~l~~~  527 (533)
                      +++++++
T Consensus       384 ~~~~~~~  390 (416)
T 3isl_A          384 EAVLLRH  390 (416)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHc
Confidence            9998864

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=99.97  E-value=7.9e-31  Score=265.25  Aligned_cols=319  Identities=12%  Similarity=0.104  Sum_probs=222.1

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      ++++++++.+++..    ....|++.....++++.+++++    | .  .++|++|+|+++++..+++.++ ++||+|++
T Consensus        21 ~~~v~~a~~~~~~~----~~~~~~~~~~~~~l~~~la~~~----g-~--~~~v~~~~~gt~a~~~al~~~~-~~gd~vi~   88 (356)
T 1v72_A           21 SPEVAQALVKHSSG----QAGPYGTDELTAQVKRKFCEIF----E-R--DVEVFLVPTGTAANALCLSAMT-PPWGNIYC   88 (356)
T ss_dssp             CHHHHHHHHHTTSS----CCCSTTCSHHHHHHHHHHHHHH----T-S--CCEEEEESCHHHHHHHHHHTSC-CTTEEEEE
T ss_pred             CHHHHHHHHhhccC----cccccccchHHHHHHHHHHHHh----C-C--CCcEEEeCCccHHHHHHHHHhc-CCCCEEEE
Confidence            68888888776532    1345655444556666666654    4 1  3469999999999999999988 79999999


Q ss_pred             cCCcCcchHHH--HHHh--CCeEEEEecCCCCCCCCCHHHHHH-HHHHHH-hcCCCeeEEEEeCCCCCCccCCCHHHHHH
Q 009517          221 PIPQYPLYSAS--IALH--GGTLVPYYLDEATGWGLETSEVKK-QLEAAK-AKGITVRALVVINPGNPTGQVLAEENQRA  294 (533)
Q Consensus       221 ~~p~~~~~~~~--~~~~--g~~~~~v~~~~~~~~~ld~~~l~~-~i~~~~-~~g~~~~~iil~~p~NPtG~~~s~~~l~~  294 (533)
                      +.|+|..+...  +...  |.+++.++.+   ++.+|+++|++ ++++.. ..++++++|++++|+| ||.+++.+++++
T Consensus        89 ~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~-tG~~~~~~~l~~  164 (356)
T 1v72_A           89 HPASHINNDECGAPEFFSNGAKLMTVDGP---AAKLDIVRLRERTREKVGDVHTTQPACVSITQATE-VGSIYTLDEIEA  164 (356)
T ss_dssp             CTTSHHHHSSTTHHHHHTTSCEEEECCCG---GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCT-TSCCCCHHHHHH
T ss_pred             cCccchhhhhchHHHHHhCCcEEEEecCC---CCeEcHHHHHHHhhhcchhhccCCceEEEEEcCCC-CCccCCHHHHHH
Confidence            99998775544  6666  9999998875   36899999999 886410 1123689999999987 999999999999


Q ss_pred             HHHHHHHcCCEEEEccccccccc--cCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeE--EEEEecCCH
Q 009517          295 IVDFCKKEGLVLLADEVYQENVY--VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGG--YMEVTGFSA  370 (533)
Q Consensus       295 i~~l~~~~~~~lI~De~y~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG--~v~~~~~~~  370 (533)
                      |+++|++||+++|+|++|..+..  .+..+ ..+ .+  +.   ..+   +++.|+||+  |   .|+|  |+++   ++
T Consensus       165 i~~~~~~~~~~li~D~a~~~~~~~~~~~~~-~~~-~~--~~---~~d---~~~~s~sK~--g---~~~G~g~~~~---~~  226 (356)
T 1v72_A          165 IGDVCKSSSLGLHMDGSRFANALVSLGCSP-AEM-TW--KA---GVD---ALSFGATKN--G---VLAAEAIVLF---NT  226 (356)
T ss_dssp             HHHHHHHTTCEEEEEETTHHHHHHHHTCCT-TTT-TG--GG---TCC---EEEECCGGG--T---CSSCEEEEES---SG
T ss_pred             HHHHHHHcCCeEEEEchhhHhHhccCCCCH-HHh-hh--hh---cCC---EEEEecccC--C---CcCccEEEEE---CH
Confidence            99999999999999999976422  12111 100 00  00   123   335699996  2   2555  7776   88


Q ss_pred             HHHHHHHHhhh--ccccC-ChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCce
Q 009517          371 EVREQIYKVAS--VNLCS-NISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGA  447 (533)
Q Consensus       371 ~~~~~l~~~~~--~~~~~-~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg  447 (533)
                      ++++.+.....  ..... ...++..+...++..     .       ...+.++++++++++.+.|++++|+.+..|.++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~-------~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~  294 (356)
T 1v72_A          227 SLATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDD-----L-------WLRNARKANAAAQRLAQGLEGLGGVEVLGGTEA  294 (356)
T ss_dssp             GGHHHHHHHHHHTTCCCSSTHHHHHHHHHHTSTT-----H-------HHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCS
T ss_pred             HHHhhHHHHhhccCchhhhHHHHHHHHHHHHHhh-----h-------HHHHHHHHHHHHHHHHHHHhhCCCcEEccCCCc
Confidence            88888766532  11122 223333344445321     1       123456677888999999998889998888888


Q ss_pred             eEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHHH
Q 009517          448 MYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~  525 (533)
                      +++|++++  .               .++.. |.++||.+.||. |+    .+++||++.  .+++++++++++|+++++
T Consensus       295 ~~~~~~~~--~---------------~~~~~-l~~~gi~v~~g~-~~----~~~iRi~~~~~~~~~~i~~~~~~l~~~l~  351 (356)
T 1v72_A          295 NILFCRLD--S---------------AMIDA-LLKAGFGFYHDR-WG----PNVVRFVTSFATTAEDVDHLLNQVRLAAD  351 (356)
T ss_dssp             SEEEEEEC--H---------------HHHHH-HHHTTCBCBCSS-SS----TTEEEEECCTTCCHHHHHHHHHHHHHTC-
T ss_pred             cEEEEEcC--H---------------HHHHH-HHhcCeEEeccc-cC----CCeEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            88996553  1               23334 467899999987 54    349999985  688999999999999887


Q ss_pred             HHH
Q 009517          526 NFM  528 (533)
Q Consensus       526 ~~~  528 (533)
                      +..
T Consensus       352 ~~~  354 (356)
T 1v72_A          352 RTQ  354 (356)
T ss_dssp             ---
T ss_pred             hhc
Confidence            654

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=99.97  E-value=5e-31  Score=275.04  Aligned_cols=330  Identities=15%  Similarity=0.133  Sum_probs=224.3

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCC-CCEEEcCChHHHHHHHHHHhcc-CCCCeE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIR-SENDGI  218 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~-~~gd~V  218 (533)
                      |+++++++.+++.+.     ..|....|..++++++++++.+.++  ... ++|++|+|+++|+..+++.++. .++++|
T Consensus        61 ~p~v~~a~~~~~~~~-----~~~~~~~~~~~~~~~l~~~la~~~~--~~~~~~v~~~~ggsea~~~al~~~~~~~~~~~v  133 (439)
T 3dxv_A           61 HPAIVAAVSAAAANP-----AGATILSASNAPAVTLAERLLASFP--GEGTHKIWFGHSGSDANEAAYRAIVKATGRSGV  133 (439)
T ss_dssp             CHHHHHHHHHHHHSC-----SCSCSSSSEEHHHHHHHHHHHHTTT--CTTTEEEEEESSHHHHHHHHHHHHHHHHSCCEE
T ss_pred             CHHHHHHHHHHHHhc-----cCccccccCCHHHHHHHHHHHHhCC--CCCCCEEEEeCCHHHHHHHHHHHHHHHhCCCEE
Confidence            789999999998862     3466566677888888888887765  234 6999999999999999998621 256889


Q ss_pred             EEcCCcCcchHHHHHHhCCeE---------------EEEecCCCCCCCC----CHHHHHHHHHHHHhcCCCeeEEEEeCC
Q 009517          219 LCPIPQYPLYSASIALHGGTL---------------VPYYLDEATGWGL----ETSEVKKQLEAAKAKGITVRALVVINP  279 (533)
Q Consensus       219 lv~~p~~~~~~~~~~~~g~~~---------------~~v~~~~~~~~~l----d~~~l~~~i~~~~~~g~~~~~iil~~p  279 (533)
                      ++.+|+|+++.......+...               ..++.... ....    |+++|+++++..  ...++++|+++++
T Consensus       134 i~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~le~~l~~~--~~~~~~~vi~~p~  210 (439)
T 3dxv_A          134 IAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPY-RNDPTGDAILTLLTEKLAAV--PAGSIGAAFIEPI  210 (439)
T ss_dssp             EEETTCCCCSSHHHHCC-------------CEEEECCCCSSSCB-TTBTTSHHHHHHHHHHHHTS--CTTCEEEEEECSS
T ss_pred             EEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcc-cccccHHHHHHHHHHHHHhc--CCCCEEEEEEccc
Confidence            999999988766554443321               12222211 0011    689999999510  1126888888888


Q ss_pred             CCCCccCC-CHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCC
Q 009517          280 GNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGK  358 (533)
Q Consensus       280 ~NPtG~~~-s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~  358 (533)
                      +|++|.+. +++++++|+++|++||+++|+||+|.+|.+.|.  ...+..  .++   .++     +.||||++ + +|+
T Consensus       211 ~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~--~~~~~~--~~~---~~d-----i~s~sK~~-~-~G~  276 (439)
T 3dxv_A          211 QSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGR--LHCFEH--EGF---VPD-----ILVLGKGL-G-GGL  276 (439)
T ss_dssp             BSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSS--SSGGGG--TTC---CCS-----EEEECGGG-G-TTS
T ss_pred             cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCch--hhHHHh--cCC---CCC-----EEEEcchh-c-CCc
Confidence            88888755 556699999999999999999999998765543  111111  111   355     33999999 5 599


Q ss_pred             eeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Q 009517          359 RGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNS--  435 (533)
Q Consensus       359 riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--  435 (533)
                      |+||+++   ++++++.+.+... .++ ++++++.++.++|+.           .+. +.+.++++++++++++.|.+  
T Consensus       277 riG~~~~---~~~~~~~~~~~~~~~t~-~~~~~~~aa~aal~~-----------~~~-~~~~~~~~~~~~~~~~~l~~~~  340 (439)
T 3dxv_A          277 PLSAVIA---PAEILDCASAFAMQTLH-GNPISAAAGLAVLET-----------IDR-DDLPAMAERKGRLLRDGLSELA  340 (439)
T ss_dssp             CCEEEEE---EHHHHTSCSSSSCCTTT-TCHHHHHHHHHHHHH-----------HHH-TTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEE---CHHHHhhhcCCCcCCCc-ccHHHHHHHHHHHHH-----------HHh-cCHHHHHHHHHHHHHHHHHHHH
Confidence            9999998   8999887765533 566 899999988887741           111 23444455555555555544  


Q ss_pred             --CCCceEecCCceeEEecccCC------CHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec
Q 009517          436 --LEGITCNKAEGAMYLFPRIQL------PEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL  507 (533)
Q Consensus       436 --~~g~~~~~~~gg~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~  507 (533)
                        ++.+..+++.|.|+ |+.+..      |...          ....++..+ .++||.+.||..++     +++||++.
T Consensus       341 ~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~----------~~~~~~~~l-~~~Gv~v~~~~~~~-----~~iRi~~~  403 (439)
T 3dxv_A          341 KRHPLIGDIRGRGLAC-GMELVCDRQSREPARA----------ETAKLIYRA-YQLGLVVYYVGMNG-----NVLEFTPP  403 (439)
T ss_dssp             HHCTTEEEEEEETTEE-EEEEEEETTTTEECHH----------HHHHHHHHH-HHHTEECEEESTTS-----CEEEECCC
T ss_pred             HhCCCeEEEEEEEEEE-EEEEecCccccCCCHH----------HHHHHHHHH-HHCCcEEeecCCCC-----CEEEEECC
Confidence              45667777776654 443310      1110          123344444 45799999975332     38999874


Q ss_pred             --CCcCcHHHHHHHHHHHHHHH
Q 009517          508 --PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       508 --~~~e~i~~~~~~l~~~l~~~  527 (533)
                        .+++++++++++|+++++++
T Consensus       404 ~~~t~e~i~~~l~~l~~~l~~~  425 (439)
T 3dxv_A          404 LTITETDIHKALDLLDRAFSEL  425 (439)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHTG
T ss_pred             CCCCHHHHHHHHHHHHHHHHHH
Confidence              78899999999999998865

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=99.97  E-value=5.5e-30  Score=269.25  Aligned_cols=379  Identities=16%  Similarity=0.153  Sum_probs=258.1

Q ss_pred             ccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHH
Q 009517           64 KVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSAD  143 (533)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~  143 (533)
                      ++..+.++++..+..++..+...|.+         ++++..|.+-.                      +..  ....++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~g~~---------~~~~~~g~~yl----------------------D~~--~~~~~~~   56 (467)
T 1ax4_A           10 RIKMVEKIRVPSREEREAALKEAGYN---------PFLLPSSAVYI----------------------DLL--TDSGTNA   56 (467)
T ss_dssp             EEEEEEECCCCCHHHHHHHHHHTTSC---------GGGSCGGGCSE----------------------ECS--CSSSCCC
T ss_pred             hhceeecccccchhHHHHHHHhcCcC---------cccCCCCceee----------------------ecc--cCcCCHH
Confidence            66778888888888888888887766         88888877532                      000  0001245


Q ss_pred             HHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC----CCCe--
Q 009517          144 SIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS----ENDG--  217 (533)
Q Consensus       144 v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~----~gd~--  217 (533)
                      +.+++.+.+..    ....|.+..+..+|+++++++++        .++|++|+|+++|+..+++.++ +    +||+  
T Consensus        57 v~~a~~~~~~~----~~~~y~~~~~~~~l~~~la~~~~--------~~~v~~t~ggt~A~~~al~~~~-~~~~~~Gd~~~  123 (467)
T 1ax4_A           57 MSDHQWAAMIT----GDEAYAGSRNYYDLKDKAKELFN--------YDYIIPAHQGRGAENILFPVLL-KYKQKEGKAKN  123 (467)
T ss_dssp             EEHHHHHHHHT----CCCCSSSCHHHHHHHHHHHHHHC--------CCEEEEESSHHHHHHHHHHHHH-HHHHHTTCCSS
T ss_pred             HHHHHHHHHhh----cccccccCccHHHHHHHHHHHcC--------CCcEEEcCCcHHHHHHHHHHHH-HhhccCCCccc
Confidence            66666666654    23468888889999999999984        3689999999999999999998 7    8998  


Q ss_pred             -EEEcCCcCcchHHHHHHhCCeEEEEecCC---C-----CCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCC-ccCC
Q 009517          218 -ILCPIPQYPLYSASIALHGGTLVPYYLDE---A-----TGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT-GQVL  287 (533)
Q Consensus       218 -Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~---~-----~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPt-G~~~  287 (533)
                       |+++.+.|..+...+...|.+++.++...   .     .++.+|+++|+++|++..  .+++++|++++||||| |.++
T Consensus       124 ~viv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~--~~~~~~vi~~~~~np~gG~~~  201 (467)
T 1ax4_A          124 PVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHG--ADNIVAIVSTVTCNSAGGQPV  201 (467)
T ss_dssp             CEEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHC--GGGEEEEEEESSBTTTTSBCC
T ss_pred             eEEEeccccchhhHHHhccCCceecccccccccccccCCcccccCHHHHHHHHHhcC--CCCeeEEEEeccccCCCccCC
Confidence             99997777777888888999988776532   1     134689999999998631  0268999999999999 8999


Q ss_pred             CHHHHHHHHHHHHHcCCEEEEcccccc--c--------cccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCC
Q 009517          288 AEENQRAIVDFCKKEGLVLLADEVYQE--N--------VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG  357 (533)
Q Consensus       288 s~~~l~~i~~l~~~~~~~lI~De~y~~--~--------~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G  357 (533)
                      +.+++++|+++|++||+++|+||++..  .        .+.+    .++..+..++.. ..|   +++.|+||++ |++ 
T Consensus       202 ~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~d---~~~~s~sK~~-g~~-  271 (467)
T 1ax4_A          202 SMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKN----ATIKEVIFDMYK-YAD---ALTMSAKKDP-LLN-  271 (467)
T ss_dssp             CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTT----CCHHHHHHHHGG-GCS---EEEEETTSTT-CCS-
T ss_pred             ChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCC----Cchhhhhhhhcc-ccc---eEEEeccccC-CCC-
Confidence            999999999999999999999998542  1        1222    122232211100 133   4568999987 554 


Q ss_pred             Cee-EEEEEecCC-H-HHHHHHHHhhh-----ccccC-ChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 009517          358 KRG-GYMEVTGFS-A-EVREQIYKVAS-----VNLCS-NISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKT  428 (533)
Q Consensus       358 ~ri-G~v~~~~~~-~-~~~~~l~~~~~-----~~~~~-~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (533)
                        + ||++.   + + ++++.+.....     ..++. +...+.++...++..          .+  +...++..+++++
T Consensus       272 --~Gg~~~~---~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~----------~~--~~~~~~~~~~~~~  334 (467)
T 1ax4_A          272 --IGGLVAI---RDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEG----------TE--EEYLHYRIGQVKY  334 (467)
T ss_dssp             --SCEEEEE---SSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHT----------TC--HHHHHHHHHHHHH
T ss_pred             --cceEEEe---CCHHHHHHHHHhhccccccccccCCccchHHHHHHHHHHHh----------hh--hhHHHHHHHHHHH
Confidence              3 56665   5 6 88887765432     11222 222222222233210          00  1122233356778


Q ss_pred             HHHHHhcCCCceEecCCceeEEecccC-----CCHHHHHHHHhcCCCChHHHHHHHHHccceEEEc-CCCC-CCC-----
Q 009517          429 LEDAFNSLEGITCNKAEGAMYLFPRIQ-----LPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVP-GSGF-GQV-----  496 (533)
Q Consensus       429 l~~~L~~~~g~~~~~~~gg~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~p-g~~f-~~~-----  496 (533)
                      +.+.|++. |+.++.|.+++++|+++.     ++..        +. +...++..++.++||.+.| |..| +..     
T Consensus       335 l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~  404 (467)
T 1ax4_A          335 LGDRLREA-GIPIQYPTGGHAVFVDCKKLVPQIPGD--------QF-PAQAVINALYLESGVRAVEIGSFLLGRDPATGE  404 (467)
T ss_dssp             HHHHHHHT-TCCBCSSCCSSEEEEESTTTCTTSCGG--------GC-HHHHHHHHHHHHHCEECEEESHHHHCBCTTTCS
T ss_pred             HHHHHHhC-CCCcccCCCceEEEEehhhhccccccC--------CC-CHHHHHHHHHHhcCceeeecCcccccccccccc
Confidence            88888874 888888899999997732     1110        01 1345566665889999999 6542 210     


Q ss_pred             ---CCCceEEEEec---CCcCcHHHHHHHHHHHHHHH
Q 009517          497 ---PGTWHFRCTIL---PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       497 ---~g~~~iRis~~---~~~e~i~~~~~~l~~~l~~~  527 (533)
                         ...+++||++.   .+++++++++++|++++++.
T Consensus       405 ~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~~  441 (467)
T 1ax4_A          405 QKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKF  441 (467)
T ss_dssp             BCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHH
T ss_pred             ccccccceEEEecccccCCHHHHHHHHHHHHHHHHhh
Confidence               11359999996   68899999999999988775

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=99.97  E-value=5.6e-31  Score=270.72  Aligned_cols=317  Identities=12%  Similarity=0.107  Sum_probs=217.3

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc------CC
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR------SE  214 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~------~~  214 (533)
                      ++++++++.+++.+.    .+.|  ..+..++++++++++.+.+|    .++|++|+|+++|+..+++.+..      .+
T Consensus        54 ~p~v~~a~~~~~~~~----~~~~--~~~~~~~~~~l~~~la~~~~----~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~  123 (395)
T 3nx3_A           54 HAKFNAKIKAQVDKL----LHTS--NLYYNENIAAAAKNLAKASA----LERVFFTNSGTESIEGAMKTARKYAFNKGVK  123 (395)
T ss_dssp             CHHHHHHHHHHHTTC----SCCC--TTSBCHHHHHHHHHHHHHHT----CSEEEEESSHHHHHHHHHHHHHHHHHHTTCT
T ss_pred             CHHHHHHHHHHHHhc----cccc--cccCCHHHHHHHHHHHHhcC----CCeEEEeCCHHHHHHHHHHHHHHHhhccCCC
Confidence            689999999988762    2222  12234555566666655544    57999999999999999988752      14


Q ss_pred             CCeEEEcCCcCcchHHHHHHhCC-------------eEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCC
Q 009517          215 NDGILCPIPQYPLYSASIALHGG-------------TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGN  281 (533)
Q Consensus       215 gd~Vlv~~p~~~~~~~~~~~~g~-------------~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~N  281 (533)
                      +++|++++|+|+++.......+.             .+..++.       .|+++|++++++      ++++|++++++|
T Consensus       124 ~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~------~~~~v~~~~~~~  190 (395)
T 3nx3_A          124 GGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKY-------NDISSVEKLVNE------KTCAIILESVQG  190 (395)
T ss_dssp             TCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECT-------TCHHHHHTTCCT------TEEEEEEESEEC
T ss_pred             CCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCC-------CCHHHHHHhccC------CeEEEEEeCccC
Confidence            69999999999987655544432             3444442       279999999875      789999888877


Q ss_pred             CCccC-CCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCee
Q 009517          282 PTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRG  360 (533)
Q Consensus       282 PtG~~-~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~ri  360 (533)
                      ++|.+ ++++++++|+++|++||+++|+||+|.+|.+.+.  ......  .++   .++     +.||||.+ + .|+|+
T Consensus       191 ~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~--~~~~~~--~~~---~~d-----~~t~sK~~-~-~G~~~  256 (395)
T 3nx3_A          191 EGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGK--FFAYEH--AQI---LPD-----IMTSAKAL-G-CGLSV  256 (395)
T ss_dssp             TTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSGGGG--GTC---CCS-----EEEECGGG-T-TTSCC
T ss_pred             CCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCc--chhHHh--cCC---CCC-----EEEecccc-c-CCCce
Confidence            77765 7888999999999999999999999999765543  111111  111   344     55899999 5 49999


Q ss_pred             EEEEEecCCHHH-HHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 009517          361 GYMEVTGFSAEV-REQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEG  438 (533)
Q Consensus       361 G~v~~~~~~~~~-~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  438 (533)
                      ||+++   ++++ ++.+.+... .+++.++++++++.++|+..       + ..+..+++++..+..++.+.+.+.+++.
T Consensus       257 G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~-------~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~  325 (395)
T 3nx3_A          257 GAFVI---NQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIF-------K-EEKILENVNKLTPYLEQSLDELINEFDF  325 (395)
T ss_dssp             EEEEE---CHHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHH-------H-HTTHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             EEEEE---chhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHH-------H-hhHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99998   8888 777765543 67888999999998887410       0 0011222222233333444444444566


Q ss_pred             ceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHH
Q 009517          439 ITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAI  516 (533)
Q Consensus       439 ~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~  516 (533)
                      +..+++.|. |+|+.+...            .+...++.. |.++||.+.|+.       .+++||++.  .++++++++
T Consensus       326 ~~~~~~~g~-~~~~~~~~~------------~~~~~~~~~-l~~~Gi~v~~~~-------~~~iRi~~~~~~t~e~i~~~  384 (395)
T 3nx3_A          326 CKKRKGLGF-MQGLSLDKS------------VKVAKVIQK-CQENALLLISCG-------ENDLRFLPPLILQKEHIDEM  384 (395)
T ss_dssp             EEEEEEETT-EEEEEECTT------------SCHHHHHHH-HHHTTEECEEET-------TTEEEECCCTTCCHHHHHHH
T ss_pred             eEEEEeEEE-EEEEEeCCc------------chHHHHHHH-HHHCCCEEecCC-------CCEEEEECCCCCCHHHHHHH
Confidence            666666665 455444411            123344444 556899999853       339999874  788999999


Q ss_pred             HHHHHHHHHH
Q 009517          517 VTRLTDFHKN  526 (533)
Q Consensus       517 ~~~l~~~l~~  526 (533)
                      +++|++++++
T Consensus       385 l~~l~~~l~~  394 (395)
T 3nx3_A          385 SEKLRKALKS  394 (395)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999998764

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.97  E-value=7.7e-31  Score=273.20  Aligned_cols=336  Identities=12%  Similarity=0.058  Sum_probs=218.3

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc-CCCCeEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-SENDGIL  219 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~Vl  219 (533)
                      |+++++++.+++.+..   ...| +.....+|++++++++    +   .+++|++|+|+++|+..+++.++. .++++|+
T Consensus        73 ~p~v~~a~~~~~~~~~---~~~~-~~~~~~~l~~~la~~~----~---~~~~v~~~~sGsea~~~ai~~a~~~~~~~~vi  141 (434)
T 3l44_A           73 HPHITKAITTAAENGV---LYGT-PTALEVKFAKMLKEAM----P---ALDKVRFVNSGTEAVMTTIRVARAYTGRTKIM  141 (434)
T ss_dssp             CHHHHHHHHHHHHHCS---CCSS-CCHHHHHHHHHHHHHC----T---TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEE
T ss_pred             CHHHHHHHHHHHHhCc---CCCC-CCHHHHHHHHHHHHhC----C---CCCEEEEeCchHHHHHHHHHHHHHhhCCCEEE
Confidence            7899999999988631   2234 3444667777777764    2   468999999999999999998762 1568999


Q ss_pred             EcCCcCcchHHHHHHhCCe-EEEEecCCCCCCC------------CCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccC
Q 009517          220 CPIPQYPLYSASIALHGGT-LVPYYLDEATGWG------------LETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV  286 (533)
Q Consensus       220 v~~p~~~~~~~~~~~~g~~-~~~v~~~~~~~~~------------ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~  286 (533)
                      +++|+|+++...+...+.. ...+......++.            -|+++|++++++..   .++++|+++.++|++|.+
T Consensus       142 ~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~---~~~~~vi~ep~~~~~G~~  218 (434)
T 3l44_A          142 KFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWG---HEVAAILVEPIVGNFGIV  218 (434)
T ss_dssp             EETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTTCHHHHHHHHHHHG---GGEEEEEECSSBCTTSCB
T ss_pred             EEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcccHHHHHHHHHhCC---CCEEEEEEcCCCCCCCCc
Confidence            9999999876544333221 1111111000000            18999999998631   156666666666777765


Q ss_pred             C-CHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEE
Q 009517          287 L-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV  365 (533)
Q Consensus       287 ~-s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~  365 (533)
                      . +++++++|.++|++||+++|+||+|.+| +.+.  ...+..  ..+   .+|     +.||||++ | +|+|+||+++
T Consensus       219 ~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g~--~~~~~~--~~~---~~d-----i~t~sK~~-~-~G~~iG~~~~  283 (434)
T 3l44_A          219 EPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMY--GGAQDL--LGV---TPD-----LTALGKVI-G-GGLPIGAYGG  283 (434)
T ss_dssp             CCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSSS--SCHHHH--HTC---CCS-----EEEEEGGG-G-TTSSCEEEEE
T ss_pred             cCCHHHHHHHHHHHHHcCCEEEEeccccce-eccc--cHHHHH--cCC---CCC-----eeehhhhh-c-CCcCeeeEEE
Confidence            5 8899999999999999999999999998 5442  222111  122   456     56899999 5 7999999988


Q ss_pred             ecCCHHHHHHHHHh----hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CC
Q 009517          366 TGFSAEVREQIYKV----ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNS----LE  437 (533)
Q Consensus       366 ~~~~~~~~~~l~~~----~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~  437 (533)
                         ++++++.+.+.    ...++++++++++++.++|+...           . +.+.++++++++++++.|++    .+
T Consensus       284 ---~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~-----------~-~~~~~~~~~~~~~l~~~L~~~~~~~~  348 (434)
T 3l44_A          284 ---KKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQ-----------Q-EGLYEKLDELGATLEKGILEQAAKHN  348 (434)
T ss_dssp             ---CHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHT-----------S-TTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ---cHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHH-----------c-ccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence               99999887652    23578899999999988874211           0 22334444555555555544    43


Q ss_pred             CceEecCCceeEEecccCCCH-HHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHH
Q 009517          438 GITCNKAEGAMYLFPRIQLPE-KAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAI  516 (533)
Q Consensus       438 g~~~~~~~gg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~  516 (533)
                      .+..+++.|.|+.| .+..+. ................++ +.|.++||.+.|+..       .++|+++..++++++++
T Consensus       349 ~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~Gv~v~~~~~-------~~~rl~~~~t~e~i~~~  419 (434)
T 3l44_A          349 IDITLNRLKGALTV-YFTTNTIEDYDAAQDTDGEMFGKFF-KLMLQEGVNLAPSKY-------EAWFLTTEHTKEDIEYT  419 (434)
T ss_dssp             CCEEEEEETTEEEE-EESSSCCCSHHHHHHSCHHHHHHHH-HHHHHTTEECCSSTT-------CCEECCTTCCHHHHHHH
T ss_pred             CCEEEEeeccEEEE-EEecCcccchhhccccCHHHHHHHH-HHHHHCCeEEeecCC-------CcEEEecccCHHHHHHH
Confidence            44556666766554 232110 000000000000113334 445568999998632       26899888999999999


Q ss_pred             HHHHHHHHHHHHH
Q 009517          517 VTRLTDFHKNFMD  529 (533)
Q Consensus       517 ~~~l~~~l~~~~~  529 (533)
                      +++|+++++++.+
T Consensus       420 l~~l~~~l~~~~~  432 (434)
T 3l44_A          420 IEAVGRAFAALAD  432 (434)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988764

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=99.97  E-value=8.4e-30  Score=259.89  Aligned_cols=321  Identities=13%  Similarity=0.084  Sum_probs=223.1

Q ss_pred             CCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeE
Q 009517          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI  218 (533)
Q Consensus       139 ~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~V  218 (533)
                      .+|+++++++.+++..       .|.  .+..++.+++++++.+.+|.+.+.+.+++|+|+++++..+++.++ ++||+|
T Consensus        29 ~~~~~v~~a~~~~~~~-------~~~--~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~-~~gd~v   98 (376)
T 3f0h_A           29 MSSEEVRAIGAEQVPY-------FRT--TEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCF-TKKDKV   98 (376)
T ss_dssp             CCCHHHHHHHTSCCCC-------CSS--HHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHC-CTTCCE
T ss_pred             CCcHHHHHHhcCCCCC-------CCC--HHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhcc-CCCCeE
Confidence            3478888877554421       122  124466666666666666754333455669999999999999998 899999


Q ss_pred             EEcCCcCcchH--HHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHH
Q 009517          219 LCPIPQYPLYS--ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIV  296 (533)
Q Consensus       219 lv~~p~~~~~~--~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~  296 (533)
                      ++++|+|+++.  ..+...|.+++.++.+.  ++.+|++++++++++      ++++|++++|+||||.+++   +++|+
T Consensus        99 i~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~~~~------~~~~v~~~~~~nptG~~~~---l~~i~  167 (376)
T 3f0h_A           99 LVIDGGSFGHRFVQLCEIHEIPYVALKLEH--GKKLTKEKLYEYDNQ------NFTGLLVNVDETSTAVLYD---TMMIG  167 (376)
T ss_dssp             EEEESSHHHHHHHHHHHHTTCCEEEEECCT--TCCCCHHHHHTTTTS------CCCEEEEESEETTTTEECC---HHHHH
T ss_pred             EEEeCChhhHHHHHHHHHcCCceEEEeCCC--CCCCCHHHHHHhhcc------CceEEEEecccCCcceecC---HHHHH
Confidence            99998776644  34667799999999864  568999999987755      7999999999999999999   99999


Q ss_pred             HHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHH
Q 009517          297 DFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQI  376 (533)
Q Consensus       297 ~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l  376 (533)
                      ++|++||+++|+|++|..+...     ..+..    .   ..+   +++.|+||+++|++|  +|++++   ++++++.+
T Consensus       168 ~l~~~~~~~li~D~~~~~~~~~-----~~~~~----~---~~d---~~~~s~~K~l~~~~G--~g~~~~---~~~~~~~~  227 (376)
T 3f0h_A          168 EFCKKNNMFFVCDCVSAFLADP-----FNMNE----C---GAD---VMITGSQKVLACPPG--ISVIVL---APRGVERV  227 (376)
T ss_dssp             HHHHHTTCEEEEECTTTTTTSC-----CCHHH----H---TCS---EEEEETTTTTCCCSS--CEEEEE---CHHHHHHH
T ss_pred             HHHHHcCCEEEEEcCccccCcc-----ccccc----c---Ccc---EEEecCcccccCCCc--eEEEEE---CHHHHHHh
Confidence            9999999999999999864321     12211    1   123   778999999954666  566776   89998887


Q ss_pred             HHhhh------------------ccccCChHHHHHHHHHcCCCCCCChhHHHHHH--HHHHHHHHHHHHHHHHHHHHhcC
Q 009517          377 YKVAS------------------VNLCSNISGQILASLVMSPPKVGDESYESYCA--ERDGILSSLARRAKTLEDAFNSL  436 (533)
Q Consensus       377 ~~~~~------------------~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~  436 (533)
                      .....                  ..++++...+.++.++++          ...+  .++.++++++++++++.+.|+++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~----------~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  297 (376)
T 3f0h_A          228 EKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLK----------EIKKHGGADAEVARIASQAADFRAKIKDL  297 (376)
T ss_dssp             HTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHH----------HHHHTTHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             hcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHH----------HHHHhcCHHHHHHHHHHHHHHHHHHHHHc
Confidence            64211                  122344434344444442          1112  25677888899999999999988


Q ss_pred             CCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHH
Q 009517          437 EGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIP  514 (533)
Q Consensus       437 ~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~  514 (533)
                       ++.+..+.....++.-.. + +          .+...+...+++++||.+.||...   .+.+++||++.  .++++++
T Consensus       298 -~~~~~~~~~~~~~~~~~~-~-~----------~~~~~l~~~l~~~~gi~v~~g~~~---~~~~~lRis~~~~~t~e~i~  361 (376)
T 3f0h_A          298 -PFELVSESPANGVTSVHP-T-T----------ANAYDIFLKLKDEYGIWICPNGGE---MKDTIFRVGHIGALTHEDNT  361 (376)
T ss_dssp             -SEEECCSSBBTTEEEEEE-S-S----------SCHHHHHHHHHHHSSEECEECCGG---GTTTCEEEECCSSCCHHHHH
T ss_pred             -CCccCccccCceEEEEeC-C-C----------CCHHHHHHHHHHhCCEEEecCccc---cCCCEEEEecCCCCCHHHHH
Confidence             777665433222221111 1 0          123445556555559999998432   23348999995  7889999


Q ss_pred             HHHHHHHHHHHH
Q 009517          515 AIVTRLTDFHKN  526 (533)
Q Consensus       515 ~~~~~l~~~l~~  526 (533)
                      +++++|++++++
T Consensus       362 ~~~~~l~~~l~~  373 (376)
T 3f0h_A          362 TLVNAFKDLQKR  373 (376)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999998763

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.97  E-value=3.7e-30  Score=263.19  Aligned_cols=298  Identities=11%  Similarity=0.051  Sum_probs=219.8

Q ss_pred             ccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc--CCCCeEEEc-CCcCcchH-HHHHHhCCeEEEEe
Q 009517          168 GIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR--SENDGILCP-IPQYPLYS-ASIALHGGTLVPYY  243 (533)
Q Consensus       168 G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--~~gd~Vlv~-~p~~~~~~-~~~~~~g~~~~~v~  243 (533)
                      ...+++++++++++...+  +++++|++|+|+++++..+++.+..  ++||+|+++ .|+|+.+. ..++..|++++.++
T Consensus        39 ~~~~~~~~l~~~~~~~~~--~~~~~v~~~~g~t~al~~~~~~~~~~~~~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~  116 (385)
T 2bkw_A           39 IFQRVLKNTRAVFKSAAA--SKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVR  116 (385)
T ss_dssp             HHHHHHHHHHHHTTCCGG--GTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             HHHHHHHHHHHHhCCCCC--CCCceEEEcCchHHHHHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCceEEEe
Confidence            466788889988875444  4578999999999999999999852  489999887 66777663 67788899999999


Q ss_pred             c-CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHc--CCEEEEccccccccccCC
Q 009517          244 L-DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKE--GLVLLADEVYQENVYVPE  320 (533)
Q Consensus       244 ~-~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~--~~~lI~De~y~~~~~~~~  320 (533)
                      + +.  ++.+|+++|++++++.     ++++|++++|+||||.+++   +++|+++|++|  |+++|+||+|..    +.
T Consensus       117 ~~~~--~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~~~li~D~a~~~----~~  182 (385)
T 2bkw_A          117 PLKI--GESVPLELITEKLSQN-----SYGAVTVTHVDTSTAVLSD---LKAISQAIKQTSPETFFVVDAVCSI----GC  182 (385)
T ss_dssp             CSST--TSCCCHHHHHHHHHHS-----CCSEEEEESEETTTTEECC---HHHHHHHHHHHCTTSEEEEECTTTT----TT
T ss_pred             cCCC--CCCCCHHHHHHHHhcC-----CCCEEEEEccCCCcCeEcC---HHHHHHHHHhhCCCCEEEEECcccc----CC
Confidence            8 53  5679999999999762     5899999999999999998   88999999999  999999999974    21


Q ss_pred             CCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHH-HHH----------------------
Q 009517          321 KKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVRE-QIY----------------------  377 (533)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~-~l~----------------------  377 (533)
                      .+ .++    ..+   ..+   +++.|+||+++|++|  +||+++   ++++++ .+.                      
T Consensus       183 ~~-~~~----~~~---~~d---~~~~s~~K~~~~~~G--~G~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  246 (385)
T 2bkw_A          183 EE-FEF----DEW---GVD---FALTASQKAIGAPAG--LSISLC---SSRFMDYALNDSKNGHVHGYFSSLRRWTPIME  246 (385)
T ss_dssp             SC-CCT----TTT---TCS---EEEEESSSTTCCCSC--EEEEEE---CHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHH
T ss_pred             cc-ccc----ccc---Cce---EEEecCccccccCCc--ceEEEE---cHHHHHHHHhhccCCCCCceeecHHHHhhHHH
Confidence            11 111    111   123   778999998755666  499998   887766 431                      


Q ss_pred             Hhhhc----cccCChHHHHHHHHHcCCCCCCChhHHHHHHH-HHHHHHHHHHHHHHHHHHH-hcCCCceEecCC-----c
Q 009517          378 KVASV----NLCSNISGQILASLVMSPPKVGDESYESYCAE-RDGILSSLARRAKTLEDAF-NSLEGITCNKAE-----G  446 (533)
Q Consensus       378 ~~~~~----~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L-~~~~g~~~~~~~-----g  446 (533)
                      .....    .++++..++.++..+|+          ...++ +++++++++++++++.+.| +++ |+.+..+.     .
T Consensus       247 ~~~~~~~~~~~~~~~~~~~a~~~al~----------~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~~~~~~~~~~~~  315 (385)
T 2bkw_A          247 NYEAGKGAYFATPPVQLINSLDVALK----------EILEEGLHKRWDLHREMSDWFKDSLVNGL-QLTSVSRYPSNMSA  315 (385)
T ss_dssp             HHHTTCCCCSSCCCHHHHHHHHHHHH----------HHHHHCHHHHHHHHHHHHHHHHHHHHTTT-CCEESSCSSSTTBC
T ss_pred             hhhccCCCCCCCCCHHHHHHHHHHHH----------HHHHccHHHHHHHHHHHHHHHHHHHHHhc-CceecccCcccccC
Confidence            11110    13566777776666653          11222 5677888999999999999 988 88877532     4


Q ss_pred             eeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEE-ec-----CCcCcHHHHHHHH
Q 009517          447 AMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCT-IL-----PQEDKIPAIVTRL  520 (533)
Q Consensus       447 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis-~~-----~~~e~i~~~~~~l  520 (533)
                      +.++|+.++  .             ...++.. |.++||.+.||..+..  +.+++||+ ++     .+++++++++++|
T Consensus       316 ~~~~~~~~~--~-------------~~~~~~~-l~~~gi~v~~g~~~~~--~~~~iRis~~~~~~~~~~~e~i~~~~~~l  377 (385)
T 2bkw_A          316 HGLTAVYVA--D-------------PPDVIAF-LKSHGVVIAGGIHKDI--GPKYIRIGHMGVTACNKNLPYMKNCFDLI  377 (385)
T ss_dssp             SSCEEEECS--C-------------HHHHHHH-HHHTTEECBCCCCTTT--GGGEEEECCCGGGTSSTTCTHHHHHHHHH
T ss_pred             CceEEEecC--C-------------HHHHHHH-HHHCCeEEeCCCCccc--CCCEEEEEccccccccCCHHHHHHHHHHH
Confidence            566775543  1             2334444 4578999999887642  34599999 65     5889999999999


Q ss_pred             HHHHHH
Q 009517          521 TDFHKN  526 (533)
Q Consensus       521 ~~~l~~  526 (533)
                      ++++++
T Consensus       378 ~~~~~~  383 (385)
T 2bkw_A          378 KLALQR  383 (385)
T ss_dssp             HHHTTC
T ss_pred             HHHHHh
Confidence            988754

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=99.97  E-value=3.8e-30  Score=269.11  Aligned_cols=332  Identities=14%  Similarity=0.149  Sum_probs=222.5

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCC-CCeEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSE-NDGIL  219 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~-gd~Vl  219 (533)
                      |+++++++.+++.+.     ..|....+..+++.++++++.+.++.. ..++|++|+|+++|++.+++.++..+ +++|+
T Consensus        79 ~p~v~~A~~~~~~~~-----~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~~v~~~~sGseA~~~Alk~a~~~~g~~~ii  152 (451)
T 3oks_A           79 APKVVEAVRSQVGDF-----THTCFMVTPYEGYVAVCEQLNRLTPVR-GDKRSALFNSGSEAVENAVKIARSHTHKPAVV  152 (451)
T ss_dssp             CHHHHHHHHHHHTTC-----SCCTTTTSCCHHHHHHHHHHHHHSSCC-SSEEEEEESSHHHHHHHHHHHHHHHHCCCEEE
T ss_pred             CHHHHHHHHHHHHhc-----ccccCCccCCHHHHHHHHHHHHhCCcC-CCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEE
Confidence            789999999998762     345555566777888888887765422 35799999999999999998876213 48999


Q ss_pred             EcCCcCcchHHHHHHhCC--------------eEEEEecCCC--CC-CCC--------CHHHHHHHHHHHHhcCCCeeEE
Q 009517          220 CPIPQYPLYSASIALHGG--------------TLVPYYLDEA--TG-WGL--------ETSEVKKQLEAAKAKGITVRAL  274 (533)
Q Consensus       220 v~~p~~~~~~~~~~~~g~--------------~~~~v~~~~~--~~-~~l--------d~~~l~~~i~~~~~~g~~~~~i  274 (533)
                      +.+++|+++...+...+.              .+..+++...  .. +++        +++.+++.+++..  +++..++
T Consensus       153 ~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~--~~~~~aa  230 (451)
T 3oks_A          153 AFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQI--GADNLAA  230 (451)
T ss_dssp             EETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHT--CGGGEEE
T ss_pred             EEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhc--CCCCEEE
Confidence            999999998876665532              3445554310  00 011        3455556665321  1123445


Q ss_pred             EEeCCCCCCc-c-CCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccC
Q 009517          275 VVINPGNPTG-Q-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGY  352 (533)
Q Consensus       275 il~~p~NPtG-~-~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~  352 (533)
                      +++.|.|++| . .++++.+++|+++|++||+++|+||+|.+|.+.|.  ...+..  .++   .+|     +.||||++
T Consensus       231 vi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~--~~~~~~--~~~---~pd-----i~t~sK~l  298 (451)
T 3oks_A          231 VVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGA--MFACEH--EGI---DPD-----LIVTAKGI  298 (451)
T ss_dssp             EEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SSGGGG--GTC---CCS-----EEEECGGG
T ss_pred             EEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCcccc--chhhhh--cCC---CCC-----eeeehhhh
Confidence            5566655544 4 55778899999999999999999999999876553  222211  112   455     44899999


Q ss_pred             CCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009517          353 YGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLED  431 (533)
Q Consensus       353 ~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  431 (533)
                       +. |+|+||+++   ++++++.+.+... .+++.++++|+++.++|+.           .+. +.+.++++++++++++
T Consensus       299 -~~-G~~iG~v~~---~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~-----------~~~-~~~~~~~~~~~~~l~~  361 (451)
T 3oks_A          299 -AG-GLPLSAVTG---RAEIMDSPHVSGLGGTYGGNPIACAAALATIET-----------IES-EGLVARAQQIEKIMKD  361 (451)
T ss_dssp             -GT-TSSCEEEEE---EHHHHTCSCTTSBCCSSSSCHHHHHHHHHHHHH-----------HHH-TTHHHHHHHHHHHHHH
T ss_pred             -hC-CcceEEEEE---CHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHH-----------Hhh-hhHHHHHHHHHHHHHH
Confidence             54 999999998   8999888765544 6789999999999888741           111 2334444445555554


Q ss_pred             HHh----cCCCceEecCCceeEEecccCC-----CHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceE
Q 009517          432 AFN----SLEGITCNKAEGAMYLFPRIQL-----PEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHF  502 (533)
Q Consensus       432 ~L~----~~~g~~~~~~~gg~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~i  502 (533)
                      .|.    +++.+..+++.|.|+ |+.+..     |...          ....++ +.|.++||.+.|+..|+.     ++
T Consensus       362 ~L~~~~~~~~~~~~~~~~G~~~-~~~~~~~~~~~~~~~----------~~~~~~-~~l~~~Gv~v~~~~~~~~-----~i  424 (451)
T 3oks_A          362 RLGRLQAEDDRIGDVRGRGAMI-AMELVKAGTTEPDAD----------LTKALC-AGAHAAGVIVLSCGTYGN-----VV  424 (451)
T ss_dssp             HHHHHHHHCTTEEEEEEETTEE-EEEEBSTTSCCBCHH----------HHHHHH-HHHHHTTEECEEECTTSC-----EE
T ss_pred             HHHHHHhhCCCeEEEEEeeEEE-EEEEecCccCCCCHH----------HHHHHH-HHHHhCCcEEecCCCCCC-----EE
Confidence            444    456677777777654 443321     1110          123333 445568999999766542     89


Q ss_pred             EEEec--CCcCcHHHHHHHHHHHHHH
Q 009517          503 RCTIL--PQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       503 Ris~~--~~~e~i~~~~~~l~~~l~~  526 (533)
                      ||++.  .++++|++++++|++++++
T Consensus       425 Ri~~~~~~t~e~i~~~l~~l~~~l~~  450 (451)
T 3oks_A          425 RFLPPLSIGDDLLNEGLDVLEEVLRG  450 (451)
T ss_dssp             EECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHhh
Confidence            99874  7899999999999998863

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=99.97  E-value=1.7e-31  Score=277.73  Aligned_cols=333  Identities=15%  Similarity=0.102  Sum_probs=220.3

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc-CCCCeEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-SENDGIL  219 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~Vl  219 (533)
                      |+++++++.+++.+.    ...|.+.....+|++++++++.       ..++|++|+|+++|+..+++.++. .++++|+
T Consensus        71 ~p~v~~A~~~~~~~~----~~~~~~~~~~~~l~~~la~~~~-------~~~~v~~~~~Gsea~~~ai~~a~~~~~~~~vi  139 (429)
T 3k28_A           71 NDRVVEALKAVAERG----TSFGAPTEIENKLAKLVIERVP-------SIEIVRMVNSGTEATMSALRLARGYTGRNKIL  139 (429)
T ss_dssp             CHHHHHHHHHHHHHC----SCCSSCCHHHHHHHHHHHHHST-------TCSEEEEESSHHHHHHHHHHHHHHHHTCCEEE
T ss_pred             CHHHHHHHHHHHhhC----cCcCCCCHHHHHHHHHHHHhCC-------CCCEEEEeCChHHHHHHHHHHHHHhhCCCEEE
Confidence            799999999999873    2233445557788888888752       468999999999999999998762 1568999


Q ss_pred             EcCCcCcchHHHHHHh-CCeEEEEecCCCCCCC------------CCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccC
Q 009517          220 CPIPQYPLYSASIALH-GGTLVPYYLDEATGWG------------LETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV  286 (533)
Q Consensus       220 v~~p~~~~~~~~~~~~-g~~~~~v~~~~~~~~~------------ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~  286 (533)
                      +.+|+|+++...+... |..+..++.....++.            -|+++|+++++...   .++++|+++.++|++|.+
T Consensus       140 ~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~---~~~~~vi~ep~~~~~G~~  216 (429)
T 3k28_A          140 KFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFG---DDIACVIVEPVAGNMGVV  216 (429)
T ss_dssp             EEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHG---GGEEEEEECSSBCTTSCB
T ss_pred             EECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCC---CCEEEEEEcCCCCCCCcc
Confidence            9999999765433222 2222222111111110            18999999998531   156666666656667764


Q ss_pred             C-CHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEE
Q 009517          287 L-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV  365 (533)
Q Consensus       287 ~-s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~  365 (533)
                      . +++++++|+++|++||+++|+||+|.+| +.+.  ......  .++   .++     +.+|||++ | .|+|+||+++
T Consensus       217 ~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~--~~~~~~--~~~---~~d-----i~t~sK~~-~-~G~~iG~~~~  281 (429)
T 3k28_A          217 PPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVAY--NCGQGY--YGV---TPD-----LTCLGKVI-G-GGLPVGAYGG  281 (429)
T ss_dssp             CCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSST--THHHHH--HTC---CCS-----EEEECGGG-G-TTSCCEEEEE
T ss_pred             cCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCc--chHHHH--hCC---CCc-----eehhhhhh-c-CCCCeEEEEE
Confidence            4 6888999999999999999999999998 5442  111111  122   455     55899999 5 4999999998


Q ss_pred             ecCCHHHHHHHHHh----hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----C
Q 009517          366 TGFSAEVREQIYKV----ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL----E  437 (533)
Q Consensus       366 ~~~~~~~~~~l~~~----~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~  437 (533)
                         ++++++.+.+.    ...++++++++++++.++|+..+             +++.++++++++++++.|+++    +
T Consensus       282 ---~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~-------------~~~~~~~~~~~~~l~~~L~~~~~~~~  345 (429)
T 3k28_A          282 ---KAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT-------------PESYVEFERKAEMLEAGLRKAAEKHG  345 (429)
T ss_dssp             ---CHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC-------------HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ---cHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence               99998887553    22568899999999998886321             345556666666666666553    4


Q ss_pred             CceEecCCceeEEecccCCCH-HHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHH
Q 009517          438 GITCNKAEGAMYLFPRIQLPE-KAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAI  516 (533)
Q Consensus       438 g~~~~~~~gg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~  516 (533)
                      .+..+++.|.|+.|. +..+. ................++.. |.++||.+.||.       .+.+|+++..++++++++
T Consensus       346 ~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~Gv~v~~~~-------~~~~r~~~~~t~e~i~~~  416 (429)
T 3k28_A          346 IPHHINRAGSMIGIF-FTDEPVINYDAAKSSNLQFFAAYYRE-MVEQGVFLPPSQ-------FEGLFLSTVHSDADIEAT  416 (429)
T ss_dssp             CCCEEEEETTEEEEE-SSSSCCCSHHHHTTSCHHHHHHHHHH-HHHTTEECCSST-------TSCBCCCTTCCHHHHHHH
T ss_pred             CCEEEEeeccEEEEE-EecCCcccccccccccHHHHHHHHHH-HHHCCeEEecCC-------CCCEEEECCCCHHHHHHH
Confidence            556677777766553 22110 00000000000012334444 456899999852       126799888999999999


Q ss_pred             HHHHHHHHHHH
Q 009517          517 VTRLTDFHKNF  527 (533)
Q Consensus       517 ~~~l~~~l~~~  527 (533)
                      +++|+++++++
T Consensus       417 l~~l~~~l~~~  427 (429)
T 3k28_A          417 IAAAEIAMSKL  427 (429)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHHH
Confidence            99999988754

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=99.97  E-value=1.6e-30  Score=267.29  Aligned_cols=312  Identities=12%  Similarity=0.126  Sum_probs=219.4

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhc-cCCCCeEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI-RSENDGIL  219 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-~~~gd~Vl  219 (533)
                      |+.+++++.+++..... ....| +.....+++++++++    +|  .++++|++|+|+++|+..+++.+. ..+|++|+
T Consensus        63 ~~~v~~a~~~~~~~~~~-~~~~~-~~~~~~~l~~~la~~----~~--~~~~~v~~~~gg~~a~~~al~~~~~~~~~~~vi  134 (395)
T 1vef_A           63 NPEVVEAVKRQAETLMA-MPQTL-PTPMRGEFYRTLTAI----LP--PELNRVFPVNSGTEANEAALKFARAHTGRKKFV  134 (395)
T ss_dssp             CHHHHHHHHHHHHHCCC-CCTTS-CCHHHHHHHHHHHHT----SC--TTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEE
T ss_pred             CHHHHHHHHHHHHhCCC-Ccccc-CCHHHHHHHHHHHHh----cC--CCcCEEEEcCcHHHHHHHHHHHHHHHhCCCeEE
Confidence            78999999988876321 11224 333355566666655    34  467899999999999999998762 02688999


Q ss_pred             EcCCcCcc-hHHHHHHhCCe------------EEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccC
Q 009517          220 CPIPQYPL-YSASIALHGGT------------LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV  286 (533)
Q Consensus       220 v~~p~~~~-~~~~~~~~g~~------------~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~  286 (533)
                      +++|+|++ +...+...|.+            +..++       ..|+++|++++++      ++++|++++++||||.+
T Consensus       135 ~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~-------~~d~~~l~~~i~~------~~~~v~~~~~~~~tG~~  201 (395)
T 1vef_A          135 AAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIP-------YNDVEALKRAVDE------ETAAVILEPVQGEGGVR  201 (395)
T ss_dssp             EETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEEC-------TTCHHHHHHHCCT------TEEEEEECSEETTTTSE
T ss_pred             EEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeC-------CCcHHHHHHHhcc------CEEEEEEeCccCCCCcc
Confidence            99999976 44566666765            22222       2489999999875      78888877778999976


Q ss_pred             -CCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEE
Q 009517          287 -LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV  365 (533)
Q Consensus       287 -~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~  365 (533)
                       .+++++++|+++|++||+++|+||+|.++.+.+.  ..++..  .++   .+|     +.||||++ +. |+|+||+++
T Consensus       202 ~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~--~~~~~~--~~~---~~d-----~~s~sK~~-~~-g~~~G~~~~  267 (395)
T 1vef_A          202 PATPEFLRAAREITQEKGALLILDEIQTGMGRTGK--RFAFEH--FGI---VPD-----ILTLAKAL-GG-GVPLGVAVM  267 (395)
T ss_dssp             ECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSTHHH--HTC---CCS-----EEEECGGG-GT-TSSCEEEEE
T ss_pred             CCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCc--hhHhhh--cCC---CCC-----EEEEcccc-cC-CCceEEEEe
Confidence             5788899999999999999999999998655442  112111  122   345     22889999 54 999999998


Q ss_pred             ecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--ceEe
Q 009517          366 TGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEG--ITCN  442 (533)
Q Consensus       366 ~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g--~~~~  442 (533)
                         ++++++.+..... .+++++++++.++.++|+           ..+. +.+.++++++++++.+.|++++.  +...
T Consensus       268 ---~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~-----------~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  332 (395)
T 1vef_A          268 ---REEVARSMPKGGHGTTFGGNPLAMAAGVAAIR-----------YLER-TRLWERAAELGPWFMEKLRAIPSPKIREV  332 (395)
T ss_dssp             ---EHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHH-----------HHHH-HTTHHHHHHHHHHHHHHHHTSCCTTEEEE
T ss_pred             ---hHHHHhhhccCCcCCCcCCCHHHHHHHHHHHH-----------HHHh-CCHHHHHHHHHHHHHHHHHHhhcCceEEE
Confidence               7887776654322 456788889888887773           1122 34677788889999999988732  2223


Q ss_pred             cCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHH
Q 009517          443 KAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRL  520 (533)
Q Consensus       443 ~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l  520 (533)
                      ++. |.++|+.++.              +...++..+++++||.+.|+       +.+++||++.  .+++++++++++|
T Consensus       333 ~~~-g~~~~~~~~~--------------~~~~l~~~l~~~~gi~v~~~-------~~~~iRi~~~~~~~~~~i~~~~~~l  390 (395)
T 1vef_A          333 RGM-GLMVGLELKE--------------KAAPYIARLEKEHRVLALQA-------GPTVIRFLPPLVIEKEDLERVVEAV  390 (395)
T ss_dssp             EEE-TTEEEEEESS--------------CSHHHHHHHHHHHCEECEES-------STTEEEECCCTTCCHHHHHHHHHHH
T ss_pred             EEE-EEEEEEEEcC--------------hHHHHHHHHHHHCCeEEecC-------CCCEEEEeCCCCCCHHHHHHHHHHH
Confidence            344 4566765541              13344555553789999985       2348999874  7889999999999


Q ss_pred             HHHH
Q 009517          521 TDFH  524 (533)
Q Consensus       521 ~~~l  524 (533)
                      ++++
T Consensus       391 ~~~l  394 (395)
T 1vef_A          391 RAVL  394 (395)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8875

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=99.97  E-value=1.8e-30  Score=270.09  Aligned_cols=319  Identities=12%  Similarity=0.106  Sum_probs=212.2

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc--------
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR--------  212 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--------  212 (533)
                      ++.+++++.+++.+... ....| +.....+|++.+++++    |    .++|++++|+++|+..+++.+..        
T Consensus        83 ~p~v~~ai~~~~~~~~~-~~~~~-~~~~~~~l~~~la~~~----g----~~~v~~~~sGseA~~~al~~a~~~~~~~~g~  152 (433)
T 1z7d_A           83 HPNILNAMINQAKNLTI-CSRAF-FSVPLGICERYLTNLL----G----YDKVLMMNTGAEANETAYKLCRKWGYEVKKI  152 (433)
T ss_dssp             CHHHHHHHHHHHTTCSC-CCTTS-EEHHHHHHHHHHHHHH----T----CSEEEEESSHHHHHHHHHHHHHHHHHHTSCC
T ss_pred             CHHHHHHHHHHHHhCCC-ccCCc-CCHHHHHHHHHHHhhc----C----CCeEEEeCCHHHHHHHHHHHHHHHhhhccCC
Confidence            78999999999876321 01123 1222445555555554    3    57999999999999999998641        


Q ss_pred             CCC-CeEEEcCCcCcchHHH-HHHhC------------CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeC
Q 009517          213 SEN-DGILCPIPQYPLYSAS-IALHG------------GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVIN  278 (533)
Q Consensus       213 ~~g-d~Vlv~~p~~~~~~~~-~~~~g------------~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~  278 (533)
                      .+| ++|++++|+|+++... +...|            ..+..+|.       .|+++|+++++.     +++++|+++.
T Consensus       153 ~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-------~d~~~le~~l~~-----~~~~~vi~ep  220 (433)
T 1z7d_A          153 PENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPY-------DDLEALEEELKD-----PNVCAFIVEP  220 (433)
T ss_dssp             CTTCCEEEEETTC--------------------------CEEEECT-------TCHHHHHHHHTS-----TTEEEEEECS
T ss_pred             CCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCC-------CCHHHHHHHhCC-----CCEEEEEEEC
Confidence            367 9999999999987543 33333            23344442       289999999942     1688877666


Q ss_pred             CCCCCcc-CCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCC
Q 009517          279 PGNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG  357 (533)
Q Consensus       279 p~NPtG~-~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G  357 (533)
                      .+|+||. +++++.+++|+++|++||+++|+||+|.+|.+.|.  ...+..  .++   .+|     +.||||.+ | +|
T Consensus       221 ~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~--~~~~~~--~~~---~~d-----i~t~sK~l-~-~G  286 (433)
T 1z7d_A          221 IQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK--LLCVHH--YNV---KPD-----VILLGKAL-S-GG  286 (433)
T ss_dssp             SBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SSGGGG--GTC---CCS-----EEEECGGG-G-TT
T ss_pred             CCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCc--chhhHh--cCC---CCC-----EEEECccc-c-CC
Confidence            6788997 47888999999999999999999999998766542  111111  111   456     34899999 5 69


Q ss_pred             -CeeEEEEEecCCHHHHHHHHHhh-hccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009517          358 -KRGGYMEVTGFSAEVREQIYKVA-SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNS  435 (533)
Q Consensus       358 -~riG~v~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  435 (533)
                       +|+||+++   ++++++.+.... ..++++++++++++.++|+           ..+. +.+.++++++++++.+.|++
T Consensus       287 ~~~~G~v~~---~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~-----------~~~~-~~~~~~~~~~~~~l~~~L~~  351 (433)
T 1z7d_A          287 HYPISAVLA---NDDIMLVIKPGEHGSTYGGNPLAASICVEALN-----------VLIN-EKLCENAEKLGGPFLENLKR  351 (433)
T ss_dssp             SSCCEEEEE---CHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHH-----------HHHH-TTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEE---CHHHHhhhccccccccCCCCHHHHHHHHHHHH-----------HHHh-ccHHHHHHHHHHHHHHHHHH
Confidence             99999998   888887775543 3667889999998888774           1111 24556677777777777765


Q ss_pred             C----CCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CC
Q 009517          436 L----EGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQ  509 (533)
Q Consensus       436 ~----~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~  509 (533)
                      +    +.+..+++.|. ++|+.+....           .+...++..+ .++||.+.|+       +.+++||++.  .+
T Consensus       352 l~~~~~~~~~~~~~g~-~~~i~~~~~~-----------~~~~~~~~~l-~~~Gv~v~~~-------~~~~iRi~~~~~~t  411 (433)
T 1z7d_A          352 ELKDSKIVRDVRGKGL-LCAIEFKNEL-----------VNVLDICLKL-KENGLITRDV-------HDKTIRLTPPLCIT  411 (433)
T ss_dssp             HHTTCTTEEEEEEETT-EEEEEECTTT-----------CCHHHHHHHH-HHTTEECCEE-------TTTEEEECCCTTCC
T ss_pred             HHHhCCCeEEEEeeee-EEEEEEccCh-----------hHHHHHHHHH-HHCCeEEecC-------CCCEEEEECCcCCC
Confidence            4    33344555555 4565554110           1234445454 4589999984       2338999875  79


Q ss_pred             cCcHHHHHHHHHHHHHHHHHH
Q 009517          510 EDKIPAIVTRLTDFHKNFMDK  530 (533)
Q Consensus       510 ~e~i~~~~~~l~~~l~~~~~~  530 (533)
                      +++|++++++|+++++++.++
T Consensus       412 ~e~i~~~l~~l~~~l~~~~~~  432 (433)
T 1z7d_A          412 KEQLDECTEIIVKTVKFFDER  432 (433)
T ss_dssp             HHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999876544

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=99.97  E-value=6.1e-30  Score=267.67  Aligned_cols=327  Identities=13%  Similarity=0.032  Sum_probs=225.4

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC------C
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS------E  214 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~------~  214 (533)
                      ++++++++.+++.+...     |....+..+...++++.+.+.++  ...++|++++|+++|++.+++.++..      +
T Consensus        93 ~p~v~~A~~~~~~~~~~-----~~~~~~~~~~~~~L~e~la~~~~--~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~  165 (457)
T 3tfu_A           93 HPALDQALTTQLRVMNH-----VMFGGLTHEPAARLAKLLVDITP--AGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLP  165 (457)
T ss_dssp             CHHHHHHHHHHHHHCSC-----CCSSSEECHHHHHHHHHHHHHSS--TTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCT
T ss_pred             CHHHHHHHHHHHHhccC-----ccccccCCHHHHHHHHHHHHhCC--CCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCC
Confidence            78999999999987321     11111122334444444444443  45679999999999999999998621      5


Q ss_pred             C-CeEEEcCCcCcchHHHHHHhCC--------------eEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeC-
Q 009517          215 N-DGILCPIPQYPLYSASIALHGG--------------TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVIN-  278 (533)
Q Consensus       215 g-d~Vlv~~p~~~~~~~~~~~~g~--------------~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~-  278 (533)
                      | ++|++.+++|+++.......+.              .+..++.........|+++|+++|++.   +.++++|+++. 
T Consensus       166 g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~---~~~~aavi~ep~  242 (457)
T 3tfu_A          166 GKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQH---AGELAAVVVEPV  242 (457)
T ss_dssp             TCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHHHHH---GGGEEEEEECSS
T ss_pred             CCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhC---CCCEEEEEEeCC
Confidence            5 5899999999997766555521              222333322211124789999999853   12688888888 


Q ss_pred             CCCCCccCC-CHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCC
Q 009517          279 PGNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG  357 (533)
Q Consensus       279 p~NPtG~~~-s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G  357 (533)
                      ++||+|.++ +++.+++|+++|++||+++|+||+|.+|.+.|.  ...+..+  ++   .+|     +.||||+++  .|
T Consensus       243 ~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~--~~a~~~~--~~---~pd-----iit~sK~l~--gG  308 (457)
T 3tfu_A          243 VQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGA--LFAADHA--GV---SPD-----IMCVGKALT--GG  308 (457)
T ss_dssp             EECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSTHHHH--TC---CCS-----EEEECGGGG--TT
T ss_pred             CcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccc--hhHhHhc--CC---Cce-----EEEEChhhh--CC
Confidence            899999765 788899999999999999999999999876553  2222221  22   466     349999984  36


Q ss_pred             -CeeEEEEEecCCHHHHHHHHHh------hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 009517          358 -KRGGYMEVTGFSAEVREQIYKV------ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLE  430 (533)
Q Consensus       358 -~riG~v~~~~~~~~~~~~l~~~------~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  430 (533)
                       +|+||+++   ++++++.+...      ...+++.++++++++.++|+.           .+ .+.+.+++++++++++
T Consensus       309 ~~~lG~v~~---~~~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~-----------~~-~~~~~~~~~~~~~~l~  373 (457)
T 3tfu_A          309 YLSLAATLC---TADVAHTISAGAAGALMHGPTFMANPLACAVSVASVEL-----------LL-GQDWRTRITELAAGLT  373 (457)
T ss_dssp             SSCCEEEEE---EHHHHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHH-----------HH-TSCHHHHHHHHHHHHH
T ss_pred             CcceEEEEE---cHHHHHHhhccCCCceeEecCCCcCHHHHHHHHHHHHH-----------Hh-hhHHHHHHHHHHHHHH
Confidence             79999998   99999988521      236788999999999888741           11 1234556667777777


Q ss_pred             HHHhcC---CCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec
Q 009517          431 DAFNSL---EGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL  507 (533)
Q Consensus       431 ~~L~~~---~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~  507 (533)
                      +.|+++   +++..+++.|.|+ ++.+..+            .+...++..+ .++||.+.|+   +     +++||++.
T Consensus       374 ~~L~~l~~~~~v~~vr~~G~~~-~i~l~~~------------~~~~~~~~~l-~~~Gv~v~~~---~-----~~lRi~p~  431 (457)
T 3tfu_A          374 AGLDTARALPAVTDVRVCGAIG-VIECDRP------------VDLAVATPAA-LDRGVWLRPF---R-----NLVYAMPP  431 (457)
T ss_dssp             HHHGGGGGSTTEEEEEECSSCE-EEEESSC------------CCHHHHHHHH-HHTTEECCCB---T-----TEEEECCC
T ss_pred             HHHHHHhcCCCeeeeecCCeEE-EEEECCc------------ccHHHHHHHH-HHCCeEEEec---C-----CEEEEECC
Confidence            777764   5677777777654 4444421            1234444454 4579999872   2     28999964


Q ss_pred             --CCcCcHHHHHHHHHHHHHHHH
Q 009517          508 --PQEDKIPAIVTRLTDFHKNFM  528 (533)
Q Consensus       508 --~~~e~i~~~~~~l~~~l~~~~  528 (533)
                        .++++|++++++|+++++++.
T Consensus       432 ~~~t~eei~~~l~~L~~~l~~~~  454 (457)
T 3tfu_A          432 YICTPAEITQITSAMVEVARLVG  454 (457)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHC-
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhc
Confidence              789999999999999988653

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=99.97  E-value=3e-29  Score=257.09  Aligned_cols=316  Identities=14%  Similarity=0.129  Sum_probs=229.6

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHh-ccCCCCeEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL-IRSENDGIL  219 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~~gd~Vl  219 (533)
                      ++++++++.+.+...    ...|.+..+..+||++++++++      . .+.|++++| ++|+..+++.+ . ++||+|+
T Consensus        16 ~~~~~~a~~~~l~~~----~~~~~~~~~~~~l~~~la~~~~------~-~~~i~~~sG-t~al~~~l~~l~~-~~gd~Vi   82 (388)
T 1b9h_A           16 DDAERNGLVRALEQG----QWWRMGGDEVNSFEREFAAHHG------A-AHALAVTNG-THALELALQVMGV-GPGTEVI   82 (388)
T ss_dssp             CHHHHHHHHHHHHTS----CCBTTTCSHHHHHHHHHHHHTT------C-SEEEEESCH-HHHHHHHHHHTTC-CTTCEEE
T ss_pred             CHHHHHHHHHHHHcC----CeeecCCHHHHHHHHHHHHHhC------C-CeEEEeCCH-HHHHHHHHHHcCC-CCcCEEE
Confidence            588999999988762    3457777889999999999985      2 246777766 89999999998 7 7899999


Q ss_pred             EcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHH
Q 009517          220 CPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC  299 (533)
Q Consensus       220 v~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~  299 (533)
                      ++.|+|+.+...+...|++++.++++++ +|.+|+++|++++++      ++++|+   |+||||.+.+   +++|+++|
T Consensus        83 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~~d~~~l~~~i~~------~~~~v~---~~n~tG~~~~---l~~i~~la  149 (388)
T 1b9h_A           83 VPAFTFISSSQAAQRLGAVTVPVDVDAA-TYNLDPEAVAAAVTP------RTKVIM---PVHMAGLMAD---MDALAKIS  149 (388)
T ss_dssp             EESSSCTHHHHHHHHTTCEEEEECBCTT-TCCBCHHHHHHHCCT------TEEEEC---CBCGGGCCCC---HHHHHHHH
T ss_pred             ECCCccHHHHHHHHHcCCEEEEEecCCC-cCCCCHHHHHHhcCc------CceEEE---EeCCccCcCC---HHHHHHHH
Confidence            9999999999999999999999999854 578999999999965      788777   9999999987   89999999


Q ss_pred             HHcCCEEEEcccccc-ccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHH-H--HHH
Q 009517          300 KKEGLVLLADEVYQE-NVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAE-V--REQ  375 (533)
Q Consensus       300 ~~~~~~lI~De~y~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~-~--~~~  375 (533)
                      ++||+++|+|++|.. ..+.+.    .+    ..+    .   ++.+.||||.. +++|.|+||+++   +++ +  ++.
T Consensus       150 ~~~~~~li~D~a~~~g~~~~~~----~~----~~~----~---~i~~~S~s~~K-~l~g~~~G~~~~---~~~~~~~~~~  210 (388)
T 1b9h_A          150 ADTGVPLLQDAAHAHGARWQGK----RV----GEL----D---SIATFSFQNGK-LMTAGEGGAVVF---PDGETEKYET  210 (388)
T ss_dssp             HHHTCCBCEECTTCTTCEETTE----EG----GGS----S---SCEEEECCTTS-SSCSSSCEEEEE---CTTCHHHHHH
T ss_pred             HHcCCEEEEecchhcCCccCCe----ec----ccc----c---ceEEEEccCCC-cccCCCeEEEEE---CCHHHHHHHH
Confidence            999999999999985 334221    11    111    2   26788999665 556789999998   554 5  565


Q ss_pred             HHHhhhc--------------cc--cCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 009517          376 IYKVASV--------------NL--CSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGI  439 (533)
Q Consensus       376 l~~~~~~--------------~~--~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~  439 (533)
                      +......              ..  ..+.+..+++...+              ++++++.++++++++++.+.|+++||+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~--------------~~l~~~~~~~~~~~~~l~~~L~~~~~~  276 (388)
T 1b9h_A          211 AFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQL--------------ARLDEQIAVRDERWTLLSRLLGAIDGV  276 (388)
T ss_dssp             HHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHH--------------TTHHHHHHHHHHHHHHHHHHHHTSTTC
T ss_pred             HHHHHhCCCCccCccceeecccccCCcCHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence            5443211              01  13334333332222              334556777888899999999998888


Q ss_pred             eEec------CCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCC----------CC------
Q 009517          440 TCNK------AEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ----------VP------  497 (533)
Q Consensus       440 ~~~~------~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~----------~~------  497 (533)
                      .+..      +.+++++|+.++.....          +...++ +.|.++||.+.+|..-..          ..      
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~l~-~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (388)
T 1b9h_A          277 VPQGGDVRADRNSHYMAMFRIPGLTEE----------RRNALV-DRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAI  345 (388)
T ss_dssp             EECCCCTTCCBCCCSEEEEECTTCCHH----------HHHHHH-HHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHH
T ss_pred             cccCCCcCCCccceEEEEEEeCCcCcc----------cHHHHH-HHHHHCCCCcccccCccccChHhHhcCCCccccccc
Confidence            8765      45678888665421000          123344 445568999998753210          00      


Q ss_pred             ----------CCceEEEEec--C-CcCcHHHHHHHHHHHHHH
Q 009517          498 ----------GTWHFRCTIL--P-QEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       498 ----------g~~~iRis~~--~-~~e~i~~~~~~l~~~l~~  526 (533)
                                ..+.|||++.  . ++++|+++++.|++++++
T Consensus       346 ~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~~~~~l~~~~~~  387 (388)
T 1b9h_A          346 ARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAVAR  387 (388)
T ss_dssp             HHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHhCeEEecCCCCCCCHHHHHHHHHHHHHHHhh
Confidence                      0136999995  6 889999999999988764

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=99.97  E-value=6.5e-30  Score=267.27  Aligned_cols=335  Identities=12%  Similarity=0.091  Sum_probs=215.4

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC---CC--
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS---EN--  215 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~---~g--  215 (533)
                      |+++++++.+++.+.     ..|....+..+.++++++++.+.++  ...++|++|+|+++|+..+++.++..   +|  
T Consensus        62 ~p~v~~A~~~~~~~~-----~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~  134 (448)
T 3dod_A           62 KKELDDAIKKQLGKI-----AHSTLLGMTNVPATQLAETLIDISP--KKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKP  134 (448)
T ss_dssp             CHHHHHHHHHHHTTC-----SCCCCSSSEEHHHHHHHHHHHHHSC--TTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCT
T ss_pred             CHHHHHHHHHHHHhc-----cCccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCchHHHHHHHHHHHHHHHHhhCCC
Confidence            689999999998762     2344455566788888888887765  44689999999999999999998721   44  


Q ss_pred             --CeEEEcCCcCcchHHHHHHhCCe-------------EEEEecCCCCCCCC-----------CHHHHHHHHHHHHhcCC
Q 009517          216 --DGILCPIPQYPLYSASIALHGGT-------------LVPYYLDEATGWGL-----------ETSEVKKQLEAAKAKGI  269 (533)
Q Consensus       216 --d~Vlv~~p~~~~~~~~~~~~g~~-------------~~~v~~~~~~~~~l-----------d~~~l~~~i~~~~~~g~  269 (533)
                        |+|++++|+|+++.......+..             +..++..  ..|..           |+++|+++|+..   ..
T Consensus       135 ~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~  209 (448)
T 3dod_A          135 EKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIP--YVYRSESGDPDECRDQCLRELAQLLEEH---HE  209 (448)
T ss_dssp             TCCEEEEEC-----------------------------CEEECCC--CCTTSSSCCHHHHHHHHHHHHHHHHHHH---GG
T ss_pred             CCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCC--ccccCCccchhhhhHHHHHHHHHHHHhC---CC
Confidence              99999999999877555444322             2223322  12222           488999999732   12


Q ss_pred             CeeEEEEeCCC-CCCc-cCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEec
Q 009517          270 TVRALVVINPG-NPTG-QVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQS  347 (533)
Q Consensus       270 ~~~~iil~~p~-NPtG-~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S  347 (533)
                      ++++|+++.++ |++| .+++++++++|+++|++||+++|+||+|++|.+.|.  ......  .++   .++     +.+
T Consensus       210 ~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~--~~a~~~--~~~---~~d-----i~t  277 (448)
T 3dod_A          210 EIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGK--MFACEH--ENV---QPD-----LMA  277 (448)
T ss_dssp             GEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SSGGGG--GTC---CCS-----EEE
T ss_pred             CEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc--hhhhhh--cCC---CCC-----EEE
Confidence            57777777776 8888 567888899999999999999999999999876553  112111  122   455     457


Q ss_pred             CCccCCCCCC-CeeEEEEEecCCHHHHHHHHH-------hhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHH
Q 009517          348 VSKGYYGECG-KRGGYMEVTGFSAEVREQIYK-------VAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGI  418 (533)
Q Consensus       348 ~SK~~~gl~G-~riG~v~~~~~~~~~~~~l~~-------~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~  418 (533)
                      |||++ + .| +|+||+++   ++++++.+.+       ... .+++.++++++++.++|+..       +. .+.++.+
T Consensus       278 ~sK~l-~-~G~~~ig~v~~---~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~-------~~-~~~~~~~  344 (448)
T 3dod_A          278 AGKGI-T-GGYLPIAVTFA---TEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALF-------ES-ENIVEQV  344 (448)
T ss_dssp             ECGGG-G-TTSSCCEEEEE---EHHHHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHHHH-------HH-TTHHHHH
T ss_pred             ecccc-c-CCcCceEEEEE---CHHHHHHhhhccccCCcccccCCCCcCHHHHHHHHHHHHHH-------hc-ccHHHHH
Confidence            89999 5 49 59999998   9999998865       333 67888999999998887410       00 0112223


Q ss_pred             HHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCC----hHHHHHHHHHccceEEEcCCCCC
Q 009517          419 LSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVP----DAFYCRRLLNATGIVLVPGSGFG  494 (533)
Q Consensus       419 ~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ll~~~gV~v~pg~~f~  494 (533)
                      ++..+..++.|.+ |.+++.+..+++.|.| +|+.+.....     .......    ...++..+ .++||.+.|+.   
T Consensus       345 ~~~~~~~~~~l~~-l~~~~~~~~~~~~g~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l-~~~Gv~~~~~~---  413 (448)
T 3dod_A          345 AEKSKKLHFLLQD-LHALPHVGDIRQLGFM-CGAELVRSKE-----TKEPYPADRRIGYKVSLKM-RELGMLTRPLG---  413 (448)
T ss_dssp             HHHHHHHHHHHHH-HTTSTTEEEEEEETTE-EEEEECSBTT-----TTBCCCGGGCHHHHHHHHH-HHTTEECCEET---
T ss_pred             HHHHHHHHHHHHH-HhcCCCeEEEEeeeEE-EEEEEccCcc-----cccccchhhHHHHHHHHHH-HHCCcEEeccC---
Confidence            3333333444444 5455556666666664 4544431100     0000000    13444444 46799999851   


Q ss_pred             CCCCCceEEEEe--cCCcCcHHHHHHHHHHHHHHHH
Q 009517          495 QVPGTWHFRCTI--LPQEDKIPAIVTRLTDFHKNFM  528 (533)
Q Consensus       495 ~~~g~~~iRis~--~~~~e~i~~~~~~l~~~l~~~~  528 (533)
                           +++||++  ..++++|++++++|+++++++.
T Consensus       414 -----~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~  444 (448)
T 3dod_A          414 -----DVIAFLPPLASTAEELSEMVAIMKQAIHEVT  444 (448)
T ss_dssp             -----TEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             -----CEEEEECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence                 3899965  4889999999999999998765

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=99.97  E-value=4.5e-30  Score=264.43  Aligned_cols=314  Identities=18%  Similarity=0.210  Sum_probs=230.8

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHh-ccCCCCeEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL-IRSENDGIL  219 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~~gd~Vl  219 (533)
                      ++.+++++.+.+..      ..|.+..+..+|+++++++++        .+++++++|+++++..+++.+ + ++||+|+
T Consensus        43 ~~~v~~a~~~~~~~------~~y~~~~~~~~l~~~la~~~~--------~~~~v~~~~Gt~a~~~~l~~~~~-~~gd~vl  107 (399)
T 2oga_A           43 RAETDAAIARVLDS------GRYLLGPELEGFEAEFAAYCE--------TDHAVGVNSGMDALQLALRGLGI-GPGDEVI  107 (399)
T ss_dssp             HHHHHHHHHHHHHH------TCCSSSHHHHHHHHHHHHHTT--------SSEEEEESCHHHHHHHHHHHTTC-CTTCEEE
T ss_pred             CHHHHHHHHHHHhc------CCCCCchhHHHHHHHHHHHHC--------CCeEEEecCHHHHHHHHHHHhCC-CCcCEEE
Confidence            57788888888764      247666788999999999974        236778888899999999998 7 7899999


Q ss_pred             EcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHH
Q 009517          220 CPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC  299 (533)
Q Consensus       220 v~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~  299 (533)
                      ++.|+|+.+...++..|.+++.++++++ ++.+|+++|++++++      ++++|+   |+||||.+.+   +++|+++|
T Consensus       108 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~~l~~~i~~------~~~~v~---~~n~tG~~~~---l~~i~~l~  174 (399)
T 2oga_A          108 VPSHTYIASWLAVSATGATPVPVEPHED-HPTLDPLLVEKAITP------RTRALL---PVHLYGHPAD---MDALRELA  174 (399)
T ss_dssp             EESSSCTHHHHHHHHTTCEEEEECBCSS-SSSBCHHHHHHHCCT------TEEEEC---CBCGGGCCCC---HHHHHHHH
T ss_pred             ECCCccHHHHHHHHHCCCEEEEEecCCC-CCCcCHHHHHHhcCC------CCeEEE---EeCCcCCccC---HHHHHHHH
Confidence            9999999999999999999999998753 578999999999875      688777   6789999987   89999999


Q ss_pred             HHcCCEEEEcccccccc-ccCCCCcccHHHHHhhcCCCCCCceEEEEecC--CccCCCCCCCeeEEEEEecCCHHHHHHH
Q 009517          300 KKEGLVLLADEVYQENV-YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSV--SKGYYGECGKRGGYMEVTGFSAEVREQI  376 (533)
Q Consensus       300 ~~~~~~lI~De~y~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~--SK~~~gl~G~riG~v~~~~~~~~~~~~l  376 (533)
                      +++|+++|+||+|..+. +++. .      + ..    ..+   +++.||  ||.+ |++| |+||+++  .++++++.+
T Consensus       175 ~~~~~~li~Dea~~~g~~~~~~-~------~-~~----~~d---i~~~S~~~sK~~-~~~G-~~g~~~~--~~~~~~~~l  235 (399)
T 2oga_A          175 DRHGLHIVEDAAQAHGARYRGR-R------I-GA----GSS---VAAFSFYPGKNL-GCFG-DGGAVVT--GDPELAERL  235 (399)
T ss_dssp             HHHTCEECEECTTCTTCEETTE-E------T-TC----TTC---EEEEECCTTSSS-CCSS-CCEEEEE--SCHHHHHHH
T ss_pred             HHcCCEEEEECcccccCccCCe-e------c-cc----ccC---EEEEeCCCCccC-CcCC-ceEEEEe--CCHHHHHHH
Confidence            99999999999998653 3221 1      0 00    133   778888  7998 7679 9999987  248888888


Q ss_pred             HHhhhc-------------cccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEe-
Q 009517          377 YKVASV-------------NLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCN-  442 (533)
Q Consensus       377 ~~~~~~-------------~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-  442 (533)
                      ......             .+..+++.++++...++              .++.+.++.++.++++.+.|++++|+.+. 
T Consensus       236 ~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~--------------~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~  301 (399)
T 2oga_A          236 RMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLA--------------HLDSWNGRRSALAAEYLSGLAGLPGIGLPV  301 (399)
T ss_dssp             HHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHH--------------THHHHHHHHHHHHHHHHHHTTTCTTCBCCC
T ss_pred             HHHHhcCccccccccccccCCCcCHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhccCCCccccC
Confidence            765431             12346677666665552              22334455566678899999888887764 


Q ss_pred             cCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCC-----------CCC----C-----CCceE
Q 009517          443 KAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGF-----------GQV----P-----GTWHF  502 (533)
Q Consensus       443 ~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f-----------~~~----~-----g~~~i  502 (533)
                      .+.++.++|+.+..+.           .+...+. +.|.++||.+.++...           +..    +     ..++|
T Consensus       302 ~~~~~~~~~~~~~~~~-----------~~~~~l~-~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l  369 (399)
T 2oga_A          302 TAPDTDPVWHLFTVRT-----------ERRDELR-SHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVL  369 (399)
T ss_dssp             CCTTEECCCSSEEEEC-----------SSHHHHH-HHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEE
T ss_pred             CCCCCcceeEEEEEEC-----------CCHHHHH-HHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEE
Confidence            3556666664333210           1233333 4456789999875421           000    0     02489


Q ss_pred             EEEec--CCcCcHHHHHHHHHHHHHHH
Q 009517          503 RCTIL--PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       503 Ris~~--~~~e~i~~~~~~l~~~l~~~  527 (533)
                      ||++.  .+++++++++++|+++++++
T Consensus       370 Ri~~~~~~t~edi~~~~~~l~~~~~~l  396 (399)
T 2oga_A          370 SLPIGPHLERPQALRVIDAVREWAERV  396 (399)
T ss_dssp             EECCSTTCCHHHHHHHHHHHHHHHHSC
T ss_pred             EccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            99995  78999999999999988654

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=99.97  E-value=7.7e-31  Score=274.13  Aligned_cols=305  Identities=14%  Similarity=0.116  Sum_probs=211.4

Q ss_pred             ccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHH----HHHh
Q 009517          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS----IALH  235 (533)
Q Consensus       160 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~----~~~~  235 (533)
                      ...|+ ..|.+ +++++++++.+.+|.    +++++++||++|+..+++ ++ ++||+|+++.|+|+.+...    +...
T Consensus       124 ~~~Y~-~~g~~-~~~~l~~~la~~~g~----~~~i~~~sGt~al~~~l~-~~-~~Gd~Vi~~~~~y~~~~~~~~~~~~~~  195 (464)
T 1ibj_A          124 PYDYT-RSGNP-TRDALESLLAKLDKA----DRAFCFTSGMAALSAVTH-LI-KNGEEIVAGDDVYGGSDRLLSQVVPRS  195 (464)
T ss_dssp             SCSBT-TTCCH-HHHHHHHHHHHHHTC----SEEEEESSHHHHHHHHHT-TS-CTTCEEEEESSCCHHHHHHHHHTSGGG
T ss_pred             Ccccc-CCCCH-HHHHHHHHHHHHhCC----CeEEEECCHHHHHHHHHH-Hh-CCCCEEEEECCCchhHHHHHHHHHHHc
Confidence            45677 44565 788888888887773    477888888999998886 66 7999999999999998764    4567


Q ss_pred             CCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccc
Q 009517          236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN  315 (533)
Q Consensus       236 g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~  315 (533)
                      |++++.++.+       |++++++++++      ++++|++++|+||||.+++   +++|+++|++||+++|+||+|...
T Consensus       196 G~~v~~v~~~-------d~~~l~~~i~~------~tk~v~l~~p~NptG~v~~---l~~i~~la~~~gi~livDea~~~g  259 (464)
T 1ibj_A          196 GVVVKRVNTT-------KLDEVAAAIGP------QTKLVWLESPTNPRQQISD---IRKISEMAHAQGALVLVDNSIMSP  259 (464)
T ss_dssp             TCEEEEECTT-------SHHHHHHHCCS------SEEEEEECSSCTTTCCCCC---HHHHHHHHHTTTCEEEEECTTTCT
T ss_pred             CCEEEEeCCC-------CHHHHHHHhcc------CceEEEEeCCCCCCCEeec---HHHHHHHHHHcCCEEEEECCCccc
Confidence            9999998863       79999999875      7999999999999999997   999999999999999999999752


Q ss_pred             cccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCC-HHHHHHHHHhhh-ccccCChHHHHH
Q 009517          316 VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFS-AEVREQIYKVAS-VNLCSNISGQIL  393 (533)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~-~~~~~~l~~~~~-~~~~~~~~~q~a  393 (533)
                      ..     ..++ .    +   ..   +|++.|+||+++|.+|+|+||+++   + +++++.+..... ...+.+++.+.+
T Consensus       260 ~~-----~~~~-~----~---~~---div~~S~sK~~~g~~Gl~~G~l~~---~~~~l~~~l~~~~~~~g~~~~~~~~~a  320 (464)
T 1ibj_A          260 VL-----SRPL-E----L---GA---DIVMHSATKFIAGHSDVMAGVLAV---KGEKLAKEVYFLQNSEGSGLAPFDCWL  320 (464)
T ss_dssp             TT-----CCGG-G----T---TC---SEEEEETTTTTTCSSCCCCEEEEE---CSHHHHHHHHHHHHHTTCBCCHHHHHH
T ss_pred             cc-----CChh-h----c---CC---EEEEECCcccccCCCCCcEEEEEE---ChHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence            11     1111 1    1   23   388999999996556899999998   6 588888877654 456678888888


Q ss_pred             HHHHcCCCCCCChhHHHHHHHHHHHHHHHHHH---HHHHHHHHhcCCCceEecCC----ceeEEecccCCCHHHHHHHHh
Q 009517          394 ASLVMSPPKVGDESYESYCAERDGILSSLARR---AKTLEDAFNSLEGITCNKAE----GAMYLFPRIQLPEKAIKAAEA  466 (533)
Q Consensus       394 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~L~~~~g~~~~~~~----gg~~~~~~~~~~~~~~~~~~~  466 (533)
                      +...|+...   ..++...+....+.+.++++   ++++.+.|+++|++.+..++    |++ +++.+.. ..       
T Consensus       321 ~~~al~~~~---~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~-~~~~l~~-~~-------  388 (464)
T 1ibj_A          321 CLRGIKTMA---LRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSV-FSFITGS-VA-------  388 (464)
T ss_dssp             HHHHHTTHH---HHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSE-EEEECSC-HH-------
T ss_pred             HHhchhhHH---HHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceE-EEEEECC-HH-------
Confidence            888775311   11222222222222222111   12233445555677666654    444 4434431 00       


Q ss_pred             cCCCChHHHHHHHHHccceEEEcCC------------CCCCC--------CCCceEEEEecCCcCcHHHHHHHHHHHHHH
Q 009517          467 EKTVPDAFYCRRLLNATGIVLVPGS------------GFGQV--------PGTWHFRCTILPQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       467 ~~~~~~~~~~~~ll~~~gV~v~pg~------------~f~~~--------~g~~~iRis~~~~~e~i~~~~~~l~~~l~~  526 (533)
                          ....++ ..|+..||.+.+|.            .++..        .+.++||||++.  |++++++++|++++++
T Consensus       389 ----~~~~~~-~~L~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~--edi~~li~~L~~al~~  461 (464)
T 1ibj_A          389 ----LSKHLV-ETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI--EDVDDLISDLDIAFKT  461 (464)
T ss_dssp             ----HHHHHH-HHCSSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS--SCHHHHHHHHHHHHHS
T ss_pred             ----HHHHHH-HhcCcceEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC--CCHHHHHHHHHHHHhh
Confidence                012233 34556899998885            22211        123589999988  8899999999998764

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=99.97  E-value=2.1e-30  Score=262.77  Aligned_cols=316  Identities=13%  Similarity=0.099  Sum_probs=215.1

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCe--E
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDG--I  218 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~--V  218 (533)
                      ++++++++.+.+      ....|.+..+..+|+++++++++      .  +..++++|+++++..+++.++ .+||+  |
T Consensus        28 ~p~v~~ai~~~~------~~~~~~~~~~~~~l~~~la~~~~------~--~~~i~~~~g~~a~~~a~~~~~-~~g~~~vv   92 (359)
T 3pj0_A           28 LTEALQNIDDNL------ESDIYGNGAVIEDFETKIAKILG------K--QSAVFFPSGTMAQQIALRIWA-DRKENRRV   92 (359)
T ss_dssp             HHHHTTTSCTTC------BCCBTTBSHHHHHHHHHHHHHHT------C--SEEEEESCHHHHHHHHHHHHH-HHHTCCEE
T ss_pred             CHHHHHHHHhhc------ccCcccCCHHHHHHHHHHHHHhC------C--CcEEEeCCHHHHHHHHHHHHH-hcCCCcEE
Confidence            456666555422      23467777788999999999975      2  223555788899999999988 67776  4


Q ss_pred             EEcCCcCcchH---HHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCC-ccCCCHHHHHH
Q 009517          219 LCPIPQYPLYS---ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT-GQVLAEENQRA  294 (533)
Q Consensus       219 lv~~p~~~~~~---~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPt-G~~~s~~~l~~  294 (533)
                      +++.++|..+.   ......|.+++.++.+   ++.+|+++|+++ .+      ++++|++++||||| |.+++.+++++
T Consensus        93 i~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~-~~------~~~~v~~~~p~n~~~G~~~~~~~l~~  162 (359)
T 3pj0_A           93 AYHPLSHLEIHEQDGLKELQQITPLLLGTA---NQLLTIDDIKSL-RE------PVSSVLIELPQREIGGQLPAFEELEK  162 (359)
T ss_dssp             EECTTCHHHHSSTTHHHHHHCCEEEECSCT---TSCCCHHHHHTC-SS------CCSEEEEESSBGGGTSBCCCHHHHHH
T ss_pred             EEeccceeeehhcchHHHhcCceEEecCCc---CCCcCHHHHHhc-cC------CceEEEEEecccCCCcccCCHHHHHH
Confidence            44444433221   2235679999988863   468999999987 33      79999999999998 79999999999


Q ss_pred             HHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHH
Q 009517          295 IVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVRE  374 (533)
Q Consensus       295 i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~  374 (533)
                      |+++|++||++||+|++|..+.....  ..+...+..     ..+   +++.||||++ +.++ . ||++.   ++++++
T Consensus       163 l~~~~~~~~~~li~D~a~~~~~~~~~--~~~~~~~~~-----~~d---~~~~s~sK~~-~~~~-g-g~~~~---~~~l~~  226 (359)
T 3pj0_A          163 ISEYCHEQGISLHLDGARLWEITPFY--QKSAEEICA-----LFD---SVYVSFYKGI-GGIA-G-AILAG---NDDFVQ  226 (359)
T ss_dssp             HHHHHHHHTCEEEEEETTCGGGHHHH--TCCHHHHHT-----TCS---EEEEESSSTT-CCSS-C-EEEEE---CHHHHH
T ss_pred             HHHHHHHcCCEEEEECcchhcchhhh--CCCHHHhhc-----cCC---EEEEeccccC-CCcc-e-EEEEC---CHHHHH
Confidence            99999999999999999865332110  012222221     123   4456999998 4332 2 78877   999999


Q ss_pred             HHHHhhh-ccccC--ChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEe-cCCceeEE
Q 009517          375 QIYKVAS-VNLCS--NISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCN-KAEGAMYL  450 (533)
Q Consensus       375 ~l~~~~~-~~~~~--~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~gg~~~  450 (533)
                      .+..... ...+.  ....+.++...++             ... +..+++.++++++.+.|++++|+.+. .+.++.++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~a~~~~l~-------------~~~-~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~  292 (359)
T 3pj0_A          227 EAKIWKRRYGGDLISLYPYILSADYYFE-------------KRI-GKMAEYFEAAKGLAERFNSCSGVKTVPEVPVSNMF  292 (359)
T ss_dssp             HHHHHHHHTTCCCSCCHHHHHHHHHHHH-------------HHG-GGHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEE
T ss_pred             HHHHHHHHhCCCcchhHHHHHHHHHHHH-------------HHH-HHhHHHHHHHHHHHHHHhhCCCceeeccCCcceEE
Confidence            9876543 22122  2222222223331             112 23345677888999999999899885 56677778


Q ss_pred             ecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec-----CCcCcHHHHHHHHHHH
Q 009517          451 FPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-----PQEDKIPAIVTRLTDF  523 (533)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-----~~~e~i~~~~~~l~~~  523 (533)
                      |++++.+...           +...+.+.|.++||.+.||..|+. ++.+++|++++     .+.+++++++++|.++
T Consensus       293 ~~~~~~~~~~-----------~~~~l~~~l~~~GV~v~~g~~~~~-~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~  358 (359)
T 3pj0_A          293 HVYFENSADE-----------IGAILTKIQDETGVGISGYLQEKS-ADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE  358 (359)
T ss_dssp             EEEESSCHHH-----------HHHHHHHHHHHHCEECCSCCEEEE-TTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred             EEEecCccch-----------hHHHHHHHHHhcCcEecCCccccC-CCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence            8777654321           122244667789999999988873 56679999885     4667788888887764

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.97  E-value=6.5e-30  Score=258.97  Aligned_cols=300  Identities=15%  Similarity=0.125  Sum_probs=209.2

Q ss_pred             ccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCC--eEEEcCCcCcchH---HHHHH
Q 009517          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND--GILCPIPQYPLYS---ASIAL  234 (533)
Q Consensus       160 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd--~Vlv~~p~~~~~~---~~~~~  234 (533)
                      ...|++..+..+|+++++++++      .  +..++++|+++++..+++++. .+||  .|+++.++|..+.   .....
T Consensus        40 ~~~y~~~~~~~~l~~~la~~~~------~--~~~i~~~~G~~a~~~al~~~~-~~gd~~~vi~~~~~~~~~~~~~~~~~~  110 (357)
T 3lws_A           40 SDQYGTGAIIEPFEQKFADVLG------M--DDAVFFPSGTMAQQVALRIWS-DETDNRTVAYHPLCHLEIHEQDGLKEL  110 (357)
T ss_dssp             CEETTEETTHHHHHHHHHHHHT------C--SEEEEESCHHHHHHHHHHHHH-HHHTCCEEEECTTCHHHHSSTTHHHHH
T ss_pred             cccccCChHHHHHHHHHHHHhC------C--CcEEEecCcHHHHHHHHHHHh-hcCCCcEEEecccceeeeeccchhhhc
Confidence            4568877778999999999975      2  334555777889999999987 6787  6666666544322   24556


Q ss_pred             hCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCC-ccCCCHHHHHHHHHHHHHcCCEEEEccccc
Q 009517          235 HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT-GQVLAEENQRAIVDFCKKEGLVLLADEVYQ  313 (533)
Q Consensus       235 ~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPt-G~~~s~~~l~~i~~l~~~~~~~lI~De~y~  313 (533)
                      .|++++.++.+   ++.+|+++|+++  .      ++++|++++||||| |.+++.+++++|+++|++||++||+||+|.
T Consensus       111 ~g~~~~~v~~~---~~~~d~~~l~~~--~------~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~  179 (357)
T 3lws_A          111 HPIETILVGAA---DRLMTLDEIKAL--P------DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARL  179 (357)
T ss_dssp             SSCEEEECSCT---TSCCCHHHHHTC--C------SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTH
T ss_pred             cCcEEEEecCC---CCCcCHHHHhcC--c------CcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchh
Confidence            69999888742   457999999886  2      48899999999998 999999999999999999999999999986


Q ss_pred             cc--cccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-cc--ccCCh
Q 009517          314 EN--VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VN--LCSNI  388 (533)
Q Consensus       314 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~--~~~~~  388 (533)
                      ..  .+.+.    +...+..     ..+   +++.||||+++|+.|   ||+++   ++++++.+.+... ..  .....
T Consensus       180 ~~~~~~~~~----~~~~~~~-----~~d---~~~~s~sK~~~~~~g---g~~~~---~~~~~~~~~~~~~~~~~~~~~~~  241 (357)
T 3lws_A          180 FEMLPYYEK----TAAEIAG-----LFD---SIYISFYKGLGGIAG---AILAG---PAAFCQTARIWKRRYGGDLISLY  241 (357)
T ss_dssp             HHHHHHHTC----CHHHHHT-----TSS---EEEEESSSTTCCSSC---EEEEE---CHHHHHHHHHHHHHTTCCCSCCH
T ss_pred             hhhhhhcCC----ChHHHHh-----cCC---EEEEeccccCCCCce---EEEEc---CHHHHHHHHHHHHHhcCCcccch
Confidence            21  12121    2222221     123   347899999854434   99988   9999998876653 21  12222


Q ss_pred             HHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEe-cCCceeEEecccCCCHHHHHHHHhc
Q 009517          389 SGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCN-KAEGAMYLFPRIQLPEKAIKAAEAE  467 (533)
Q Consensus       389 ~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~gg~~~~~~~~~~~~~~~~~~~~  467 (533)
                      ..+.++...|+          .   +.+. .+++.++++++.+.|++++|+.+. .+.+++|+|++++.+...       
T Consensus       242 ~~~~~~~~~l~----------~---~~~~-~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~-------  300 (357)
T 3lws_A          242 PYIVSADYYYE----------L---RKDR-MGQYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQAAD-------  300 (357)
T ss_dssp             HHHHHHHHHHH----------H---HTTC-HHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEEESCHHH-------
T ss_pred             HHHHHHHHHHH----------H---HHHH-HHHHHHHHHHHHHHHHhCCCCeeccCCCcceEEEEEecCChHH-------
Confidence            33333333332          1   1222 234677788999999999899884 577788899877643210       


Q ss_pred             CCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec-----CCcCcHHHHHHHHHHHH
Q 009517          468 KTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-----PQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       468 ~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-----~~~e~i~~~~~~l~~~l  524 (533)
                         +... +.+.|.++||.+.||..|+  ++..++|++++     .+.++|++++++|.+++
T Consensus       301 ---~~~~-~~~~l~~~Gi~v~~g~~~~--~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al  356 (357)
T 3lws_A          301 ---ISPK-LEQVQEETGLGFVGYLVDK--DGYCSTEISVGDAYGELDQQTRDAGFARLRQAF  356 (357)
T ss_dssp             ---HHHH-HHHHHHHHCEESCSCCEEC--SSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred             ---HHHH-HHHHHHhcCeEEecccccC--CCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence               1223 3456778999999997665  45568999985     46677888888887764

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=99.97  E-value=1.2e-29  Score=264.45  Aligned_cols=315  Identities=12%  Similarity=0.101  Sum_probs=222.2

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc--------
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR--------  212 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--------  212 (533)
                      |+++++++.+++.+... ....|. .....+|++.+++++    |    .++|++++|+++|+..+++.++.        
T Consensus        94 ~p~v~~Ai~~~~~~~~~-~~~~~~-~~~~~~l~~~la~~~----g----~~~v~~~~sGseA~~~al~~~~~~~~~~~g~  163 (439)
T 2oat_A           94 HPKIVNALKSQVDKLTL-TSRAFY-NNVLGEYEEYITKLF----N----YHKVLPMNTGVEAGETACKLARKWGYTVKGI  163 (439)
T ss_dssp             CHHHHHHHHHHHTTCSC-CCTTSE-ESSHHHHHHHHHHHH----T----CSEEEEESSHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHHHHhcCc-ccCccC-CHHHHHHHHHHHHhc----C----CCEEEEeCCHHHHHHHHHHHHHHHhhhccCC
Confidence            79999999999876321 111232 223567777777765    3    57899999999999999998751        


Q ss_pred             CCC-CeEEEcCCcCcchHH-HHHHhC------------CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeC
Q 009517          213 SEN-DGILCPIPQYPLYSA-SIALHG------------GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVIN  278 (533)
Q Consensus       213 ~~g-d~Vlv~~p~~~~~~~-~~~~~g------------~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~  278 (533)
                      .+| ++|++++|+|+++.. .+...|            ..++.+|.       .|+++|+++++.     +++++|+++.
T Consensus       164 ~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-------~d~~~le~~l~~-----~~~~~vi~ep  231 (439)
T 2oat_A          164 QKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY-------NDLPALERALQD-----PNVAAFMVEP  231 (439)
T ss_dssp             CTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECS-------SCHHHHHHHTTS-----TTEEEEEECS
T ss_pred             CCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCC-------CCHHHHHHHhCC-----CCEEEEEEEC
Confidence            256 899999999998654 434334            35555553       289999999852     1677777666


Q ss_pred             CCCCCcc-CCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCC
Q 009517          279 PGNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG  357 (533)
Q Consensus       279 p~NPtG~-~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G  357 (533)
                      .+|+||. +++++.+++|.++|++||+++|+||+|.+|.+.|.  ...+..  ..+   .+|     +.||||++ | +|
T Consensus       232 ~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~--~~~~~~--~~~---~~D-----i~t~sK~l-~-~G  297 (439)
T 2oat_A          232 IQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGR--WLAVDY--ENV---RPD-----IVLLGKAL-S-GG  297 (439)
T ss_dssp             SBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SSGGGG--GTC---CCS-----EEEECGGG-G-TT
T ss_pred             CCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCc--chhHHH--hCC---CCc-----EEEecccc-c-CC
Confidence            6788996 67899999999999999999999999998766543  111111  111   356     33999999 5 48


Q ss_pred             -CeeEEEEEecCCHHHHHHHHHhh-hccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009517          358 -KRGGYMEVTGFSAEVREQIYKVA-SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNS  435 (533)
Q Consensus       358 -~riG~v~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  435 (533)
                       +|+||+++   ++++++.+.... ..++++++++++++.++|+           ..+. +.+.++++++++++.+.|++
T Consensus       298 ~~~~G~v~~---~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~-----------~~~~-~~~~~~~~~~~~~l~~~L~~  362 (439)
T 2oat_A          298 LYPVSAVLC---DDDIMLTIKPGEHGSTYGGNPLGCRVAIAALE-----------VLEE-ENLAENADKLGIILRNELMK  362 (439)
T ss_dssp             SSCCEEEEE---CHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHH-----------HHHH-TTHHHHHHHHHHHHHHHHTT
T ss_pred             CCCeEEEEE---CHHHHhccCCCCcccCCCcCHHHHHHHHHHHH-----------HHhh-hhHHHHHHHHHHHHHHHHHH
Confidence             99999998   888887775543 3667889999998888774           1111 34667788889999999988


Q ss_pred             CCCce---EecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCc
Q 009517          436 LEGIT---CNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQE  510 (533)
Q Consensus       436 ~~g~~---~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~  510 (533)
                      + ++.   .+++.|. ++|+.+....         + .+...++..+ .++||.+.|+       +.+++||++.  .++
T Consensus       363 l-~~~~~~~~~~~g~-~~~v~l~~~~---------~-~~~~~l~~~l-~~~Gv~v~~~-------~~~~iRi~~~~~~t~  422 (439)
T 2oat_A          363 L-PSDVVTAVRGKGL-LNAIVIKETK---------D-WDAWKVCLRL-RDNGLLAKPT-------HGDIIRFAPPLVIKE  422 (439)
T ss_dssp             S-CTTTEEEEEEETT-EEEEEECCCS---------S-CCHHHHHHHH-HHTTEECCBS-------SSSEEEECCCTTCCH
T ss_pred             h-cCCCcEEEEeeee-EEEEEEecCc---------c-HHHHHHHHHH-HHCCeEEecC-------CCCEEEEECccCCCH
Confidence            7 433   3445554 5565554210         0 1234445454 4579999973       2348999874  789


Q ss_pred             CcHHHHHHHHHHHHHH
Q 009517          511 DKIPAIVTRLTDFHKN  526 (533)
Q Consensus       511 e~i~~~~~~l~~~l~~  526 (533)
                      +++++++++|++++++
T Consensus       423 e~i~~~l~~l~~~l~~  438 (439)
T 2oat_A          423 DELRESIEIINKTILS  438 (439)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999998764

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=99.97  E-value=3.2e-29  Score=257.92  Aligned_cols=190  Identities=14%  Similarity=0.180  Sum_probs=153.8

Q ss_pred             CCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHH----HHhCCeEE
Q 009517          165 HSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI----ALHGGTLV  240 (533)
Q Consensus       165 ~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~----~~~g~~~~  240 (533)
                      +..+..+++++++++++      .  ++++++++|++|+..+++.+. ++||+|+++.|+|+++...+    ...|.+++
T Consensus        62 ~~~~~~~l~~~la~~~g------~--~~~i~~~sG~~a~~~~l~~~~-~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~  132 (398)
T 2rfv_A           62 GNPTTDALEKKLAVLER------G--EAGLATASGISAITTTLLTLC-QQGDHIVSASAIYGCTHAFLSHSMPKFGINVR  132 (398)
T ss_dssp             CCHHHHHHHHHHHHHHT------C--SEEEEESSHHHHHHHHHHHHC-CTTCEEEEESSSCHHHHHHHHTHHHHTTCEEE
T ss_pred             CChHHHHHHHHHHHHhC------C--CcEEEECCHHHHHHHHHHHHh-CCCCEEEEcCCCcccHHHHHHHHHHHcCCEEE
Confidence            34556778888887764      2  256666667799999999998 79999999999999988776    77899999


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCC
Q 009517          241 PYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPE  320 (533)
Q Consensus       241 ~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~  320 (533)
                      .++.+       |++++++++++      ++++|++++|+||||.+++   +++|+++|++||+++|+||+|..+.+. .
T Consensus       133 ~v~~~-------d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~-~  195 (398)
T 2rfv_A          133 FVDAA-------KPEEIRAAMRP------ETKVVYIETPANPTLSLVD---IETVAGIAHQQGALLVVDNTFMSPYCQ-Q  195 (398)
T ss_dssp             EECTT-------SHHHHHHHCCT------TEEEEEEESSBTTTTBCCC---HHHHHHHHHHTTCEEEEECTTTCTTTC-C
T ss_pred             EeCCC-------CHHHHHHhcCC------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccC-C
Confidence            98864       79999999876      7999999999999999998   999999999999999999999876552 1


Q ss_pred             CCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCee-EEEEEecCCHHHHH-HHHHhhh-c-cccCChHHHHHHHH
Q 009517          321 KKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRG-GYMEVTGFSAEVRE-QIYKVAS-V-NLCSNISGQILASL  396 (533)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~ri-G~v~~~~~~~~~~~-~l~~~~~-~-~~~~~~~~q~a~~~  396 (533)
                       +   +     .+   ..+   +++.|+||.+ +.+|+|+ ||+++   ++++++ .+..... . +.+.+++.+.++.+
T Consensus       196 -~---~-----~~---~~d---i~~~s~sK~~-~~~g~~~~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (398)
T 2rfv_A          196 -P---L-----QL---GAD---IVVHSVTKYI-NGHGDVIGGIIVG---KQEFIDQARFVGLKDITGGCMSPFNAWLTLR  256 (398)
T ss_dssp             -G---G-----GG---TCS---EEEEETTTTT-TCSSCCCCEEEEE---CHHHHHHHHHTHHHHTTCCCCCHHHHHHHHH
T ss_pred             -c---h-----hh---CCc---EEEEeCcccc-cCCCCceEEEEEE---CHHHHHHHHHHHHHhCCCCCCCHHHHHHHHh
Confidence             1   1     11   233   8899999998 6799998 99998   888876 5655544 3 46788889988888


Q ss_pred             HcC
Q 009517          397 VMS  399 (533)
Q Consensus       397 ~L~  399 (533)
                      .|+
T Consensus       257 ~l~  259 (398)
T 2rfv_A          257 GVK  259 (398)
T ss_dssp             HHT
T ss_pred             hhh
Confidence            875

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=99.97  E-value=6.1e-29  Score=251.82  Aligned_cols=316  Identities=14%  Similarity=0.139  Sum_probs=225.4

Q ss_pred             CCCHHHHHHHHHHHhcCCCCCccccC-CCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCe
Q 009517          139 LFSADSIERAWQILDQIPGRATGAYS-HSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDG  217 (533)
Q Consensus       139 ~~p~~v~~~~~~~~~~~~~~~~~~Y~-~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~  217 (533)
                      .+|+++++++.+.+.+.    ..+|. ...+..++.+.+.+.+.+.+|.+ ++++|++|+|+++++..+++.+. .+ +.
T Consensus        14 ~~~~~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~~v~~~~g~t~al~~~~~~l~-~~-~~   86 (362)
T 3ffr_A           14 ELYPTVRQHMITALDEK----IGVISHRSKKFEEVYKTASDNLKTLLELP-SNYEVLFLASATEIWERIIQNCV-EK-KS   86 (362)
T ss_dssp             CCCTTHHHHHHHHHHTT----TTTSCTTSHHHHHHHHHHHHHHHHHTTCC-TTEEEEEESCHHHHHHHHHHHHC-SS-EE
T ss_pred             CCCHHHHHHHHHHhcCC----ccCcCCCCHHHHHHHHHHHHHHHHHhCCC-CCcEEEEeCCchHHHHHHHHhcc-CC-cE
Confidence            34889999988887752    21111 22234466666666666666643 46789999999999999999998 66 55


Q ss_pred             EEEcCCcCcc-hHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHH
Q 009517          218 ILCPIPQYPL-YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIV  296 (533)
Q Consensus       218 Vlv~~p~~~~-~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~  296 (533)
                      +++..+.|.. +...+...|++++.++.+.  ++.+|+++|+  +++      ++++|++++|+||||.+++   +++|+
T Consensus        87 i~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~--~~~------~~~~v~~~~~~nptG~~~~---l~~i~  153 (362)
T 3ffr_A           87 FHCVNGSFSKRFYEFAGELGREAYKEEAAF--GKGFYPADIT--VPA------DAEIICLTHNETSSGVSMP---VEDIN  153 (362)
T ss_dssp             EEEECSHHHHHHHHHHHHTTCEEEEEECCT--TCCCCGGGCC--CCT------TCCEEEEESEETTTTEECC---HHHHT
T ss_pred             EEEcCcHHHHHHHHHHHHhCCCeEEEecCC--CCCCCHHHHh--ccC------CccEEEEEcCCCCcceeCC---HHHHH
Confidence            5566666662 3446677899999999864  5688999998  433      7999999999999999999   88899


Q ss_pred             HHHHHc-CCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHH
Q 009517          297 DFCKKE-GLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQ  375 (533)
Q Consensus       297 ~l~~~~-~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~  375 (533)
                      ++|++| |+++|+|++|..+....     .       +.  ..+   +++.|+||++++++|+  |++++   ++++++.
T Consensus       154 ~la~~~p~~~li~D~a~~~~~~~~-----~-------~~--~~d---~~~~s~~K~~~~~~G~--g~~~~---~~~~~~~  211 (362)
T 3ffr_A          154 TFRDKNKDALIFVDAVSSLPYPKF-----D-------WT--KID---SVFFSVQKCFGLPAGL--GVWIL---NDRVIEK  211 (362)
T ss_dssp             TSGGGSTTSEEEEECTTTTTSSCC-----C-------TT--SCS---EEEEETTSTTCCCSCC--EEEEE---EHHHHHH
T ss_pred             HHHHhCCCCEEEEecccccCCccc-----C-------hh--HCc---EEEEecccccCCCCce--EEEEE---CHHHHHH
Confidence            999999 99999999997532211     0       00  122   7789999999547785  66666   8888887


Q ss_pred             HHHhhh----------------------ccccCChHHHHHHHHHcCCCCCCChhHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 009517          376 IYKVAS----------------------VNLCSNISGQILASLVMSPPKVGDESYESYCA-ERDGILSSLARRAKTLEDA  432 (533)
Q Consensus       376 l~~~~~----------------------~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~  432 (533)
                      +.+...                      ..++++..++.++..+++          ...+ .++++.++++++++++.+.
T Consensus       212 ~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~----------~~~~~~~~~~~~~~~~~~~~l~~~  281 (362)
T 3ffr_A          212 SKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTG----------DMLQISADGIRKQTEEKAALINTY  281 (362)
T ss_dssp             HHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHH----------HHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHH----------HHHHccHHHHHHHHHHHHHHHHHH
Confidence            776532                      135566777766666652          1111 1567888899999999999


Q ss_pred             HhcCCCceEecC----CceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec-
Q 009517          433 FNSLEGITCNKA----EGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-  507 (533)
Q Consensus       433 L~~~~g~~~~~~----~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-  507 (533)
                      |+++||+.+..+    ..+.++|+.++.              +...+... |.++||.+.||..+.   +.++|||++. 
T Consensus       282 L~~~~g~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~-l~~~gi~~~~g~~~~---~~~~iRis~~~  343 (362)
T 3ffr_A          282 IESSKVFSFGVEDAKLRSMTTIVANTTM--------------LPGEINKI-LEPFDMAVGAGYGSK---KETQIRIANFP  343 (362)
T ss_dssp             HHHCSSEEESSSCGGGBCSSEEEEEESS--------------CHHHHHHH-HGGGTEEEEECSGGG---TTTEEEEECCT
T ss_pred             HHHccCceeccCChhhcCCceEEEecCC--------------CHHHHHHH-HHHCCeEEecCcccc---CCCEEEEECCC
Confidence            999989888763    234556654431              23444444 555699999986543   2349999996 


Q ss_pred             -CCcCcHHHHHHHHHHHH
Q 009517          508 -PQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       508 -~~~e~i~~~~~~l~~~l  524 (533)
                       .+++++++++++|++++
T Consensus       344 ~~~~e~i~~l~~~l~~~~  361 (362)
T 3ffr_A          344 AHSLEQVHKLVQTLKEKI  361 (362)
T ss_dssp             TSCHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHh
Confidence             68888999998888753

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=99.97  E-value=2.7e-29  Score=262.66  Aligned_cols=328  Identities=14%  Similarity=0.132  Sum_probs=223.0

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCC-cccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC------
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHS-QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS------  213 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~-~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~------  213 (533)
                      |+++++++.+++.+..      |... .+..++++++++.+.+.++  .++++|++|+|+++|+..+++.+. .      
T Consensus        68 ~~~v~~a~~~~~~~~~------~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~~~ggsea~~~al~~~~-~~~~~~g  138 (449)
T 3a8u_X           68 RKEIQEAVAKQLSTLD------YSPGFQYGHPLSFQLAEKITDLTP--GNLNHVFFTDSGSECALTAVKMVR-AYWRLKG  138 (449)
T ss_dssp             CHHHHHHHHHHTTTCS------CCCSSSCCCHHHHHHHHHHHTTSS--TTEEEEEEESSHHHHHHHHHHHHH-HHHHHTT
T ss_pred             CHHHHHHHHHHHHhCC------CccccccCCHHHHHHHHHHHHhCC--CCCCEEEEcCcHHHHHHHHHHHHH-HHHHhcC
Confidence            6899999998887521      2111 2334556666666665544  467899999999999999999876 3      


Q ss_pred             --CCCeEEEcCCcCcchHH-HHHHhCC------------eEEEEecCC--CCCC-CCC--------HHHHHHHHHHHHhc
Q 009517          214 --ENDGILCPIPQYPLYSA-SIALHGG------------TLVPYYLDE--ATGW-GLE--------TSEVKKQLEAAKAK  267 (533)
Q Consensus       214 --~gd~Vlv~~p~~~~~~~-~~~~~g~------------~~~~v~~~~--~~~~-~ld--------~~~l~~~i~~~~~~  267 (533)
                        ++|+|++.+|+|+++.. .+...|.            .+..++...  ..+| ++|        +++|+++|++..  
T Consensus       139 ~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~--  216 (449)
T 3a8u_X          139 QATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHD--  216 (449)
T ss_dssp             CTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHC--
T ss_pred             CCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcC--
Confidence              67999999999998654 4444432            234444321  1111 356        999999997531  


Q ss_pred             CCCeeEEEEeCCCCCCcc-CCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEe
Q 009517          268 GITVRALVVINPGNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQ  346 (533)
Q Consensus       268 g~~~~~iil~~p~NPtG~-~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~  346 (533)
                      ..++++|+++..+||||. +.+++++++|+++|++||+++|+||+|++|.+.|.  ...+..+  .+   .+|     +.
T Consensus       217 ~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~--~~~~~~~--~~---~~d-----i~  284 (449)
T 3a8u_X          217 ASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGS--MFGADSF--GV---TPD-----LM  284 (449)
T ss_dssp             GGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSHHHHH--TC---CCS-----EE
T ss_pred             CCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCc--chhhhhc--CC---CCC-----EE
Confidence            015666665544678996 66799999999999999999999999998765442  1222111  22   355     33


Q ss_pred             cCCccCCCCCC-CeeEEEEEecCCHHHHHHHHHh----------hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHH
Q 009517          347 SVSKGYYGECG-KRGGYMEVTGFSAEVREQIYKV----------ASVNLCSNISGQILASLVMSPPKVGDESYESYCAER  415 (533)
Q Consensus       347 S~SK~~~gl~G-~riG~v~~~~~~~~~~~~l~~~----------~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~  415 (533)
                      ||||++ + +| +|+||+++   ++++++.+...          ...++++++++++++.++|+           ..+. 
T Consensus       285 s~sK~l-~-~G~~~~G~~~~---~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~-----------~~~~-  347 (449)
T 3a8u_X          285 CIAKQV-T-NGAIPMGAVIA---STEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALC-----------LLQK-  347 (449)
T ss_dssp             EECGGG-G-TTSSCCEEEEE---EHHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHH-----------HHHH-
T ss_pred             EEcccc-c-CCCCceEEEEE---CHHHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHH-----------HHHh-
Confidence            899999 5 47 99999998   88999888763          12467789999988888773           1111 


Q ss_pred             HHHHHHHHHHHHHHHHHHhcC---CCceEecCCceeEEecccCCCHHHHHHHHhcCCC--ChHHHHHHHHHccceEEEcC
Q 009517          416 DGILSSLARRAKTLEDAFNSL---EGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTV--PDAFYCRRLLNATGIVLVPG  490 (533)
Q Consensus       416 ~~~~~~~~~~~~~l~~~L~~~---~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~gV~v~pg  490 (533)
                      +.+.++++++++++++.|+++   +.+..+++.| .++|+.+.....         ..  +...+...++ ++||.+.|+
T Consensus       348 ~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g-~~~~i~~~~~~~---------~~~~~~~~~~~~l~-~~Gv~v~~~  416 (449)
T 3a8u_X          348 ENLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFG-LAGAIQIAPRDG---------DAIVRPFEAGMALW-KAGFYVRFG  416 (449)
T ss_dssp             TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEET-TEEEEEECCBTT---------BSSHHHHHHHHHHH-HHTEECEEE
T ss_pred             cCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeE-EEEEEEEecCcc---------cccccHHHHHHHHH-HCCcEEecC
Confidence            245667788888888888775   2233344544 567766542110         00  1123444544 679999985


Q ss_pred             CCCCCCCCCceEEEEe--cCCcCcHHHHHHHHHHHHHHH
Q 009517          491 SGFGQVPGTWHFRCTI--LPQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       491 ~~f~~~~g~~~iRis~--~~~~e~i~~~~~~l~~~l~~~  527 (533)
                      .        +++||++  ..+++++++++++|+++++++
T Consensus       417 g--------~~iRis~~~~~t~~~i~~~l~~l~~~l~~~  447 (449)
T 3a8u_X          417 G--------DTLQFGPTFNSKPQDLDRLFDAVGEVLNKL  447 (449)
T ss_dssp             T--------TEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             C--------CEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence            1        3899996  489999999999999988753

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=99.97  E-value=2.5e-29  Score=253.62  Aligned_cols=317  Identities=14%  Similarity=0.147  Sum_probs=215.0

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      ++.+.+++.+...     ....|.+..+..+||+++|++++        .+++++++|+++++..+++.+. ++||+|++
T Consensus        17 ~~~~~~a~~~~~~-----~~~~y~~~~~~~~l~~~la~~~g--------~~~~~~~~~gt~a~~~~~~~~~-~~gd~Vl~   82 (347)
T 1jg8_A           17 TEEMRKAMAQAEV-----GDDVYGEDPTINELERLAAETFG--------KEAALFVPSGTMGNQVSIMAHT-QRGDEVIL   82 (347)
T ss_dssp             CHHHHHHHHTCCC-----CCGGGTCCHHHHHHHHHHHHHHT--------CSEEEEESCHHHHHHHHHHHHC-CTTCEEEE
T ss_pred             CHHHHHHHhcCCC-----CCcccCCChHHHHHHHHHHHHhC--------CceEEEecCcHHHHHHHHHHhc-CCCCEEEE
Confidence            4666666543321     13468888889999999999985        2467888888999999999988 89999999


Q ss_pred             cCCcCcc-hH--HHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCC-ccCCCHHHHHHHH
Q 009517          221 PIPQYPL-YS--ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT-GQVLAEENQRAIV  296 (533)
Q Consensus       221 ~~p~~~~-~~--~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPt-G~~~s~~~l~~i~  296 (533)
                      ++|+|.. |.  ..+...|++++.+ .+  .++.+|+++|++++++....++++++|++++||||| |.+++.+++++|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~g~~~~~v-~~--~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~  159 (347)
T 1jg8_A           83 EADSHIFWYEVGAMAVLSGVMPHPV-PG--KNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEIC  159 (347)
T ss_dssp             ETTCHHHHSSTTHHHHHTCCEEEEE-CE--ETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHH
T ss_pred             cCcchhhhccccchhhccCeEEEEe-cC--CCCccCHHHHHHHhccccccccCceEEEEeccccccCCccCcHHHHHHHH
Confidence            9999865 32  3567789999888 43  245689999999886310001258999999999999 9999999999999


Q ss_pred             HHHHHcCCEEEEccccccc--cccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEE-EEEecCCHHHH
Q 009517          297 DFCKKEGLVLLADEVYQEN--VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGY-MEVTGFSAEVR  373 (533)
Q Consensus       297 ~l~~~~~~~lI~De~y~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~-v~~~~~~~~~~  373 (533)
                      ++|++||+++|+||+|...  .+.+.    +...+...     .+   .++.|+||++ ++   ++|| ++.   +++++
T Consensus       160 ~~a~~~~~~li~D~a~~~~~~~~~~~----~~~~~~~~-----~d---~~~~s~sK~l-~~---~~G~~~~~---~~~~~  220 (347)
T 1jg8_A          160 TIAKEHGINVHIDGARIFNASIASGV----PVKEYAGY-----AD---SVMFCLSKGL-CA---PVGSVVVG---DRDFI  220 (347)
T ss_dssp             HHHHHHTCEEEEEETTHHHHHHHHCC----CHHHHHHT-----CS---EEEEESSSTT-CC---SSCEEEEE---CHHHH
T ss_pred             HHHHHCCCEEEeehhhhhcchhhcCC----ChHHhccc-----cc---EEEEeccccc-CC---CceEEEEc---CHHHH
Confidence            9999999999999987521  12221    22222211     23   2345899988 43   3674 555   88888


Q ss_pred             HHHHHhhh-cc--ccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEe-cCCceeE
Q 009517          374 EQIYKVAS-VN--LCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCN-KAEGAMY  449 (533)
Q Consensus       374 ~~l~~~~~-~~--~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~gg~~  449 (533)
                      +.+..+.. ..  ...+...+.++...|+..          .   +.+. +..++++.+.+.|+++ |+.+. .+..+.|
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~---~~~~-~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~  285 (347)
T 1jg8_A          221 ERARKARKMLGGGMRQAGVLAAAGIIALTKM----------V---DRLK-EDHENARFLALKLKEI-GYSVNPEDVKTNM  285 (347)
T ss_dssp             HHHHHHHHHHTCCCSSTHHHHHHHHHHHHHS----------S---TTHH-HHHHHHHHHHHHHHHH-TCBCCGGGCCSSE
T ss_pred             HHHHHHHHHcCCchhHHHHHHHHHHHHHHHH----------H---HHHH-HHHHHHHHHHHHHHhc-CceeccCCCcceE
Confidence            88766543 22  223445555555554311          1   1122 2234567788888877 77652 3444556


Q ss_pred             EecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 009517          450 LFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~~  527 (533)
                      +|++++.. +         . +...++..+ .++||.+.|+.       .+++||++.  .+++++++++++|+++++++
T Consensus       286 ~~~~~~~~-~---------~-~~~~~~~~l-~~~gi~v~~~~-------~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~~  346 (347)
T 1jg8_A          286 VILRTDNL-K---------V-NAHGFIEAL-RNSGVLANAVS-------DTEIRLVTHKDVSRNDIEEALNIFEKLFRKF  346 (347)
T ss_dssp             EEEECTTS-S---------S-CHHHHHHHH-HHHTEECEEEE-------TTEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEcccc-c---------C-CHHHHHHHH-HHCCCEEecCC-------CCeEEEEeCCCCCHHHHHHHHHHHHHHHHhc
Confidence            88655310 0         1 234455555 56899999742       238999985  68999999999999988653

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=99.97  E-value=3.3e-28  Score=252.51  Aligned_cols=318  Identities=14%  Similarity=0.096  Sum_probs=227.6

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCC-CcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSH-SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGIL  219 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~-~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vl  219 (533)
                      |+.+++++.+.+..      ..|++ ..+..+||++++++++        .++|++|+|+++++..+++.+.  +||+|+
T Consensus        31 p~~~~~a~~~~~~~------~~y~~~~~~~~~l~~~la~~~~--------~~~v~~~~ggt~al~~~l~~l~--~gd~Vl   94 (424)
T 2po3_A           31 RARLYERLDRALDS------QWLSNGGPLVREFEERVAGLAG--------VRHAVATCNATAGLQLLAHAAG--LTGEVI   94 (424)
T ss_dssp             HHHHHHHHHHHHHH------TCCSSSCHHHHHHHHHHHHHHT--------SSEEEEESCHHHHHHHHHHHHT--CCSEEE
T ss_pred             hHHHHHHHHHHHhc------CCcccCCHHHHHHHHHHHHHhC--------CCeEEEeCCHHHHHHHHHHHcC--CCCEEE
Confidence            57888888888765      14877 7889999999999985        2589999999999999999985  689999


Q ss_pred             EcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHH
Q 009517          220 CPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC  299 (533)
Q Consensus       220 v~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~  299 (533)
                      +++|+|+.+...+...|++++.+++++ .+|.+|+++|++++++      ++++|++++   |||...+   +++|+++|
T Consensus        95 v~~~~~~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~------~~~~v~~~~---~tG~~~~---l~~i~~la  161 (424)
T 2po3_A           95 MPSMTFAATPHALRWIGLTPVFADIDP-DTGNLDPDQVAAAVTP------RTSAVVGVH---LWGRPCA---ADQLRKVA  161 (424)
T ss_dssp             EESSSCTHHHHHHHHTTCEEEEECBCT-TTSSBCHHHHGGGCCT------TEEEEEEEC---GGGCCCC---HHHHHHHH
T ss_pred             ECCCccHHHHHHHHHcCCEEEEEecCC-CcCCcCHHHHHHhhCc------CCcEEEEEC---CCCCcCC---HHHHHHHH
Confidence            999999999999999999999999975 3678999999998875      789998864   8998765   99999999


Q ss_pred             HHcCCEEEEccccc-cccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCC-HHHHHHHH
Q 009517          300 KKEGLVLLADEVYQ-ENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFS-AEVREQIY  377 (533)
Q Consensus       300 ~~~~~~lI~De~y~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~-~~~~~~l~  377 (533)
                      +++|+++|+||+|. ++.+++. +   +    ..    ..|   +++.||||.. +++|+|+||+++   + +++++.+.
T Consensus       162 ~~~~~~li~Dea~~~g~~~~~~-~---~----~~----~~d---i~~~S~sk~K-~l~~~~~G~~v~---~~~~l~~~l~  222 (424)
T 2po3_A          162 DEHGLRLYFDAAHALGCAVDGR-P---A----GS----LGD---AEVFSFHATK-AVNAFEGGAVVT---DDADLAARIR  222 (424)
T ss_dssp             HHTTCEEEEECTTCTTCEETTE-E---T----TS----SSS---EEEEECCTTS-SSCCSSCEEEEE---SCHHHHHHHH
T ss_pred             HHcCCEEEEECccccCCeECCe-e---c----cc----ccC---EEEEeCCCCC-CccCCCCeEEEe---CCHHHHHHHH
Confidence            99999999999999 6666442 1   1    11    134   7899999554 456799999998   6 88988887


Q ss_pred             Hhhhc-c---cc-----CC-hHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEec-CCc
Q 009517          378 KVASV-N---LC-----SN-ISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNK-AEG  446 (533)
Q Consensus       378 ~~~~~-~---~~-----~~-~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~g  446 (533)
                      ..... .   +.     .+ .+.+.++...+.           ..+.++...++.+++++++.+.|++++|+.+.. +++
T Consensus       223 ~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~-----------~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~  291 (424)
T 2po3_A          223 ALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLT-----------SLDAFPEVIDRNRRNHAAYREHLADLPGVLVADHDRH  291 (424)
T ss_dssp             HHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHTCSCTTEEECCGGGG
T ss_pred             HHHhcCccccccccccCcCCCcCHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCC
Confidence            65431 1   10     00 112222222221           123445566677777888999998888888876 554


Q ss_pred             e---eEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCC---------C----CCc-------eEE
Q 009517          447 A---MYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQV---------P----GTW-------HFR  503 (533)
Q Consensus       447 g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~---------~----g~~-------~iR  503 (533)
                      +   +++| .+.++...      .+. +...+ .+.|.++||.+.+.  |...         .    ..+       .||
T Consensus       292 ~~~~~~~~-~i~~~~~~------~~~-~~~~l-~~~L~~~gI~v~~~--~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~  360 (424)
T 2po3_A          292 GLNNHQYV-IVEIDEAT------TGI-HRDLV-MEVLKAEGVHTRAY--FSPGCHELEPYRGQPHAPLPHTERLAARVLS  360 (424)
T ss_dssp             SCCCCCCE-EEEECHHH------HSS-CHHHH-HHHHHHTTEECBCT--TCSCGGGSTTTTTSCCCCCHHHHHHHTTEEE
T ss_pred             CccccEEE-EEEECCcc------chh-hHHHH-HHHHHHCCCceecc--cCCccccchhhhhcCCCCChhHHHHhcCEEE
Confidence            3   2333 12223200      011 12333 35667799999872  2200         0    011       277


Q ss_pred             EEe--cCCcCcHHHHHHHHHHHHHHHH
Q 009517          504 CTI--LPQEDKIPAIVTRLTDFHKNFM  528 (533)
Q Consensus       504 is~--~~~~e~i~~~~~~l~~~l~~~~  528 (533)
                      +++  ..+++++++++++|++++++..
T Consensus       361 l~~~~~~t~e~i~~~~~~L~~~~~~~~  387 (424)
T 2po3_A          361 LPTGTAIGDDDIRRVADLLRLCATRGR  387 (424)
T ss_dssp             ECCSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             eeCCCCCCHHHHHHHHHHHHHHHhhhH
Confidence            774  3889999999999999987654

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=99.97  E-value=1.5e-28  Score=252.24  Aligned_cols=316  Identities=14%  Similarity=0.132  Sum_probs=226.3

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHh-ccCCCCeEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL-IRSENDGIL  219 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~~gd~Vl  219 (533)
                      |+++++++.+.+.+.      .|.+..+..+|+++++++++        .+++++++|+++|+..+++.+ + ++||+|+
T Consensus        19 ~~~~~~a~~~~~~~~------~~~~~~~~~~l~~~la~~~~--------~~~~~~~~~gt~al~~~~~~~~~-~~gd~Vl   83 (393)
T 1mdo_A           19 GAEELAAVKTVLDSG------WITTGPKNQELEAAFCRLTG--------NQYAVAVSSATAGMHIALMALGI-GEGDEVI   83 (393)
T ss_dssp             CHHHHHHHHHHHHHT------CCSSSHHHHHHHHHHHHHHC--------CSEEEEESCHHHHHHHHHHHTTC-CTTCEEE
T ss_pred             CHHHHHHHHHHHhcC------CcCCChHHHHHHHHHHHHhC--------CCcEEEecChHHHHHHHHHHcCC-CCCCEEE
Confidence            788888888888762      24456778999999999985        247999999999999999999 7 7999999


Q ss_pred             EcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHH
Q 009517          220 CPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC  299 (533)
Q Consensus       220 v~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~  299 (533)
                      ++.|+|+.+...++..|++++.++++++ ++.+|+++|++++++      ++++|+++   ||||.+.+   +++|.++|
T Consensus        84 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~~d~~~l~~~l~~------~~~~v~~~---~~~G~~~~---~~~i~~l~  150 (393)
T 1mdo_A           84 TPSMTWVSTLNMIVLLGANPVMVDVDRD-TLMVTPEHIEAAITP------QTKAIIPV---HYAGAPAD---LDAIYALG  150 (393)
T ss_dssp             EESSSCHHHHHHHHHTTCEEEEECBCTT-TCCBCHHHHHHHCCT------TEEEECCB---CGGGCCCC---HHHHHHHH
T ss_pred             eCCCccHhHHHHHHHCCCEEEEEeccCC-cCCCCHHHHHHhcCC------CceEEEEe---CCCCCcCC---HHHHHHHH
Confidence            9999999999999999999999998753 578999999999875      78888875   48999877   89999999


Q ss_pred             HHcCCEEEEcccccc-ccccCCCCcccHHHHHhhcCCCCCCceEEEEecCC--ccCCCCCCCeeEEEEEecCC-HHHHHH
Q 009517          300 KKEGLVLLADEVYQE-NVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVS--KGYYGECGKRGGYMEVTGFS-AEVREQ  375 (533)
Q Consensus       300 ~~~~~~lI~De~y~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~S--K~~~gl~G~riG~v~~~~~~-~~~~~~  375 (533)
                      +++|+++|+||+|.. +.+.+. +          +   ..  ..+++.|||  |.+   +|.|+||+++   + +++++.
T Consensus       151 ~~~~~~li~D~a~~~g~~~~~~-~----------~---~~--~d~~~~S~~k~K~l---~~~~~g~~~~---~~~~~~~~  208 (393)
T 1mdo_A          151 ERYGIPVIEDAAHATGTSYKGR-H----------I---GA--RGTAIFSFHAIKNI---TCAEGGIVVT---DNPQFADK  208 (393)
T ss_dssp             HHHTCCBCEECTTCTTCEETTE-E----------T---TS--SSEEEEECCTTSSS---CSSSCEEEEE---SCHHHHHH
T ss_pred             HHcCCeEEEECccccCCeECCe-e----------c---CC--CCeEEEeCCCCCcc---ccccceEEEe---CCHHHHHH
Confidence            999999999999985 344321 1          1   10  237789999  665   4569999998   5 788888


Q ss_pred             HHHhhhccc-------------------------cCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 009517          376 IYKVASVNL-------------------------CSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLE  430 (533)
Q Consensus       376 l~~~~~~~~-------------------------~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  430 (533)
                      +........                         ..+.+.++++...+              +.+++..++.++.++++.
T Consensus       209 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l--------------~~~~~~~~~~~~~~~~l~  274 (393)
T 1mdo_A          209 LRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQL--------------QKLDALNARRAAIAAQYH  274 (393)
T ss_dssp             HHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHH--------------HTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Confidence            876543111                         12333333332222              234455566667788899


Q ss_pred             HHHhcCCCceEec-C-----CceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCC----------
Q 009517          431 DAFNSLEGITCNK-A-----EGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFG----------  494 (533)
Q Consensus       431 ~~L~~~~g~~~~~-~-----~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~----------  494 (533)
                      +.|.++ ++.+.. +     .+++++|+.++  ...      .+. +...+. +.|.++||.+.+|..+.          
T Consensus       275 ~~L~~~-~~~~~~~~~~~~~~~~~~~~v~~~--~~~------~~~-~~~~l~-~~l~~~gi~v~~~~~~~~~~~~~~~~~  343 (393)
T 1mdo_A          275 QAMADL-PFQPLSLPSWEHIHAWHLFIIRVD--EAR------CGI-TRDALM-ASLKTKGIGTGLHFRAAHTQKYYRERF  343 (393)
T ss_dssp             HHHHTS-SCEECCCCSSCEECCCSCEEEECC--HHH------HSS-CHHHHH-HHHHHTTBCCBCCCCCGGGSHHHHHHS
T ss_pred             HHHhcC-CcccccCCCCCCCceeEEEEEEec--ccc------ccc-CHHHHH-HHHHhCCCCcccccCccccChhhhccC
Confidence            999988 476542 2     35566775543  100      011 233333 45566899999987541          


Q ss_pred             ---CCC-----CCceEEEEec--CCcCcHHHHHHHHHHHHHHHHHHh
Q 009517          495 ---QVP-----GTWHFRCTIL--PQEDKIPAIVTRLTDFHKNFMDKF  531 (533)
Q Consensus       495 ---~~~-----g~~~iRis~~--~~~e~i~~~~~~l~~~l~~~~~~~  531 (533)
                         ..+     +...|||++.  .+++++++++++|+++++....++
T Consensus       344 ~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~~~~~  390 (393)
T 1mdo_A          344 PTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIAGQGSHHH  390 (393)
T ss_dssp             TTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC------
T ss_pred             CccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHhcCCccc
Confidence               001     1237999996  799999999999999998877653

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=99.96  E-value=9.5e-29  Score=258.84  Aligned_cols=323  Identities=13%  Similarity=0.077  Sum_probs=210.3

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHH---hccCCCCe
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQL---LIRSENDG  217 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~---l~~~~gd~  217 (533)
                      |+.+++++.+++...     ..|   .+..++++++++++.+.++   ..++|++++|+++|+..+++.   +.  .+++
T Consensus        75 ~~~v~~a~~~~~~~~-----~~~---~~~~~~~~~la~~l~~~~~---~~~~v~~~~gg~eA~~~al~~ar~~~--~~~~  141 (453)
T 2cy8_A           75 HPRVNAAIAEALSHG-----VQY---AASHPLEVRWAERIVAAFP---SIRKLRFTGSGTETTLLALRVARAFT--GRRM  141 (453)
T ss_dssp             CHHHHHHHHHHHTTT-----CSS---CSSCHHHHHHHHHHHHHCT---TCSEEEEESCHHHHHHHHHHHHHHHH--CCCE
T ss_pred             CHHHHHHHHHHHHhC-----CCC---CCCCHHHHHHHHHHHhhCC---CCCEEEEeCCHHHHHHHHHHHHHHhh--CCCE
Confidence            789999999988752     123   2356899999999988764   578999999999999999998   54  4578


Q ss_pred             EEEcCCcCcchHHHHHH-h----------CCe------EEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCC
Q 009517          218 ILCPIPQYPLYSASIAL-H----------GGT------LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPG  280 (533)
Q Consensus       218 Vlv~~p~~~~~~~~~~~-~----------g~~------~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~  280 (533)
                      |++.+|+|+++...+.. .          |..      +..++.       .|+++|++++++.   ++++++|+++..+
T Consensus       142 vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------~d~~~le~~l~~~---~~~~~~vi~ep~~  211 (453)
T 2cy8_A          142 ILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRP-------DDIEGMREVFANH---GSDIAAFIAEPVG  211 (453)
T ss_dssp             EEEECC----------------------------CGGGEEEECT-------TCHHHHHHHHHHH---GGGEEEEEECSSE
T ss_pred             EEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCC-------CCHHHHHHHHHhc---CCCEEEEEECCCC
Confidence            99999999987654322 1          221      222221       3899999999853   1257777655556


Q ss_pred             CCCccC-CCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCe
Q 009517          281 NPTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKR  359 (533)
Q Consensus       281 NPtG~~-~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~r  359 (533)
                      ||||.+ .+++++++|+++|++||+++|+||+|+++ +.+.  ...+..  ..+   .+|     +.||||++ + +|+|
T Consensus       212 ~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~--~~~~~~--~~~---~~d-----i~s~sK~l-~-~G~~  276 (453)
T 2cy8_A          212 SHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGN--HGMQAL--LDV---QPD-----LTCLAKAS-A-GGLP  276 (453)
T ss_dssp             HHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT-TTCT--THHHHH--HTC---CCS-----EEEEEGGG-G-TTSS
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc-ccCc--hhhhHH--hCC---CCc-----EEEEChhh-h-CCcc
Confidence            789975 57999999999999999999999999987 5442  111111  122   456     44899999 5 4999


Q ss_pred             eEEEEEecCCHHHHHHHHH------hhhccccCChHHHHHHHHHcCCCCCCChhHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 009517          360 GGYMEVTGFSAEVREQIYK------VASVNLCSNISGQILASLVMSPPKVGDESYESY-CAERDGILSSLARRAKTLEDA  432 (533)
Q Consensus       360 iG~v~~~~~~~~~~~~l~~------~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~  432 (533)
                      +||+++   ++++++.+..      ....++++++++++++.++|+           . .  .+.+.++++++++++++.
T Consensus       277 ~G~v~~---~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~-----------~~~--~~~~~~~~~~~~~~l~~~  340 (453)
T 2cy8_A          277 GGILGG---REDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAID-----------TIL--EDDVCAKINDLGQFAREA  340 (453)
T ss_dssp             CEEEEE---CHHHHTTSSSCC---------CCCCHHHHHHHHHHHH-----------HHH--HTTHHHHHHHHHHHHHHH
T ss_pred             eEEEec---hHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHH-----------HHh--hhhHHHHHHHHHHHHHHH
Confidence            999998   8898887754      122467889999998888773           1 1  133455666677777777


Q ss_pred             HhcC----CCceEecCCceeEEecccCC-----CHHHHHHHHhcCC-C--ChHHHHHHHHHccceEEEcCCCCCCCCCCc
Q 009517          433 FNSL----EGITCNKAEGAMYLFPRIQL-----PEKAIKAAEAEKT-V--PDAFYCRRLLNATGIVLVPGSGFGQVPGTW  500 (533)
Q Consensus       433 L~~~----~g~~~~~~~gg~~~~~~~~~-----~~~~~~~~~~~~~-~--~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~  500 (533)
                      |+++    +....+++.|. ++|+.+..     .... ........ +  ....++..++ ++||.+.|+       +  
T Consensus       341 L~~~~~~~~~~~~~~~~g~-~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~-~~Gv~v~~~-------~--  408 (453)
T 2cy8_A          341 MNHLFARKGLNWLAYGRFS-GFHLMPGLPPNTTDTGS-ITRAEVARPDVKMIAAMRMALI-LEGVDIGGR-------G--  408 (453)
T ss_dssp             HHHHHHHTTCCEEEECCTT-EEEEEETSCTTCCCCHH-HHTTCSCCCCHHHHHHHHHHHH-HTTEECBTT-------T--
T ss_pred             HHHHHhhCCCcEEEEEeee-EEEEEEecccccccccc-ccccccccccHHHHHHHHHHHH-HCCeEEeCC-------C--
Confidence            7653    32333566655 56765542     1000 00000000 0  1234555554 579999652       1  


Q ss_pred             eEEEEecCCcCcHHHHHHHHHHHHHHHHH
Q 009517          501 HFRCTILPQEDKIPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       501 ~iRis~~~~~e~i~~~~~~l~~~l~~~~~  529 (533)
                      .+|+++..++++|++++++|+++++++.+
T Consensus       409 ~~~l~~~~t~~~i~~~l~~l~~~l~~~~~  437 (453)
T 2cy8_A          409 SVFLSAQHEREHVEHLVTTFDRVLDRLAD  437 (453)
T ss_dssp             EEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEeeccCCHHHHHHHHHHHHHHHHHHHh
Confidence            47887779999999999999999988754

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=99.96  E-value=5.7e-29  Score=258.47  Aligned_cols=326  Identities=12%  Similarity=0.074  Sum_probs=209.0

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc-CCCCeEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-SENDGIL  219 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~Vl  219 (533)
                      |+++++++.+++.+.     ..|..   ..+++.++++++.+.++   .+++|++++|+++|+..+++.+.. ..+++|+
T Consensus        70 ~p~v~~a~~~~~~~~-----~~~~~---~~~~~~~la~~l~~~~~---~~~~v~~~~ggsea~~~al~~a~~~~~~~~vi  138 (427)
T 3fq8_A           70 HPEVIEALKVAMEKG-----TSFGA---PCALENVLAEMVNDAVP---SIEMVRFVNSGTEACMAVLRIMRAYTGRDKII  138 (427)
T ss_dssp             CHHHHHHHHHHHTTC-----SCCSS---CCHHHHHHHHHHHHHST---TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEE
T ss_pred             CHHHHHHHHHHHHhC-----CCcCC---CCHHHHHHHHHHHHhCC---CCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEE
Confidence            799999999998762     12322   23566666666666554   478999999999999999965431 2357899


Q ss_pred             EcCCcCcchHHHHHHh-CC-------------------eEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCC
Q 009517          220 CPIPQYPLYSASIALH-GG-------------------TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP  279 (533)
Q Consensus       220 v~~p~~~~~~~~~~~~-g~-------------------~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p  279 (533)
                      +.+|+|+++...+... |.                   .+..++..       |+++|++++++.   ..++++|+++.+
T Consensus       139 ~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------d~~~le~~l~~~---~~~~~~vi~~p~  208 (427)
T 3fq8_A          139 KFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYN-------DLEAVKALFAEN---PGEIAGVILEPI  208 (427)
T ss_dssp             EEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETT-------CHHHHHHHHHHS---TTTEEEEEECSS
T ss_pred             EECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCC-------CHHHHHHHHHhC---CCCEEEEEEcCC
Confidence            9999998754332222 11                   12333321       899999999762   125777777777


Q ss_pred             CCCCccCCC-HHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCC
Q 009517          280 GNPTGQVLA-EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGK  358 (533)
Q Consensus       280 ~NPtG~~~s-~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~  358 (533)
                      +|++|.+.+ ++++++|+++|++||+++|+||+|.+| +.+.  ...     .+..+..+|     +.||||++ + +|+
T Consensus       209 ~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~--~~~-----~~~~~~~~d-----i~t~sK~~-~-~G~  273 (427)
T 3fq8_A          209 VGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAY--GGV-----QEKFGVTPD-----LTTLGKII-G-GGL  273 (427)
T ss_dssp             BCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBT--THH-----HHHTTCCCS-----EEEECGGG-G-TTS
T ss_pred             cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCc--chh-----hHhcCCCCC-----hhhhhhhh-h-CCc
Confidence            788887555 666999999999999999999999998 5442  111     111111455     56899999 5 699


Q ss_pred             eeEEEEEecCCHHHHHHHHHh----hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009517          359 RGGYMEVTGFSAEVREQIYKV----ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFN  434 (533)
Q Consensus       359 riG~v~~~~~~~~~~~~l~~~----~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  434 (533)
                      |+||+++   ++++++.+...    ...++++++++++++.++|+...           . +.+.++++++++++++.|+
T Consensus       274 ~~G~~~~---~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~-----------~-~~~~~~~~~~~~~~~~~l~  338 (427)
T 3fq8_A          274 PVGAYGG---KREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLR-----------Q-PGTYEYLDQITKRLSDGLL  338 (427)
T ss_dssp             SCEEEEE---CHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHT-----------S-TTHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEE---cHHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHH-----------h-cCHHHHHHHHHHHHHHHHH
Confidence            9999998   99999887653    23567789999999888874211           0 2233444444445555444


Q ss_pred             c----CCCceEecCCceeEEecccCCCH-HHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCC
Q 009517          435 S----LEGITCNKAEGAMYLFPRIQLPE-KAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQ  509 (533)
Q Consensus       435 ~----~~g~~~~~~~gg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~  509 (533)
                      +    ++....+.+. |+++|+.+.... ................++.. |.++||.+.|+..       ..+|+++..+
T Consensus       339 ~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~Gi~v~~~~~-------~r~~~~~~~t  409 (427)
T 3fq8_A          339 AIAQETGHAACGGQV-SGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRG-MLEQGIYLAPSQF-------EAGFTSLAHT  409 (427)
T ss_dssp             HHHHHTTCCCEEEEE-TTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHH-HHHTTEECCSSTT-------SCEECCTTCC
T ss_pred             HHHHhCCCCeEEEEe-eeEEEEEEecCccccccccccccHHHHHHHHHH-HHHCCcEEecCCC-------CCEEeeCcCC
Confidence            3    3222233333 445555443110 00000000000002234444 5568999998642       1466666789


Q ss_pred             cCcHHHHHHHHHHHHHH
Q 009517          510 EDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       510 ~e~i~~~~~~l~~~l~~  526 (533)
                      ++++++++++|++++++
T Consensus       410 ~e~i~~~l~~l~~~l~~  426 (427)
T 3fq8_A          410 EEDIDATLAAARTVMSA  426 (427)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999998865

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=99.96  E-value=5.5e-28  Score=257.05  Aligned_cols=312  Identities=11%  Similarity=0.037  Sum_probs=227.4

Q ss_pred             ccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCE--EEcCChHHHHHHHHHHhccCCC--------CeEEEcCCcCcchH
Q 009517          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDI--FLTDGASPAVHMMMQLLIRSEN--------DGILCPIPQYPLYS  229 (533)
Q Consensus       160 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i--~~t~G~~~al~~~~~~l~~~~g--------d~Vlv~~p~~~~~~  229 (533)
                      ...|....+..++++++++++.+.+|.+.+++++  ++|+|+++++..++++++ ++|        |+|+++.|+|..+.
T Consensus       128 ~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~-~~g~~~~g~~~d~Vi~~~~~~~~~~  206 (514)
T 3mad_A          128 PLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYR-DWARATKGITAPEAVVPVSAHAAFD  206 (514)
T ss_dssp             TTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHH-HHHHHHHCCSSCEEEEETTSCTHHH
T ss_pred             CcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHH-HHhhhhcCCCCCeEEEeCccchHHH
Confidence            4455556677889999999999888866555788  999999999999999997 565        89999999999999


Q ss_pred             HHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEc
Q 009517          230 ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLAD  309 (533)
Q Consensus       230 ~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~D  309 (533)
                      ..+...|++++.+++++  ++.+|+++|+++|++      ++++|++++|+||||.+.+   +++|+++|++||+++|+|
T Consensus       207 ~~~~~~G~~v~~v~~~~--~~~~d~~~Le~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~i~livD  275 (514)
T 3mad_A          207 KAAQYFGIKLVRTPLDA--DYRADVAAMREAITP------NTVVVAGSAPGYPHGVVDP---IPEIAALAAEHGIGCHVD  275 (514)
T ss_dssp             HHHHHHTCEEEEECBCT--TSCBCHHHHHHHCCT------TEEEEEEETTCTTTCCCCC---HHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHcCCeeEEeeeCC--CCCCCHHHHHHHhcc------CCEEEEEeCCCCCCccccC---HHHHHHHHHHhCCeEEEe
Confidence            99999999999999875  678999999999976      7999999999999999988   899999999999999999


Q ss_pred             ccccccccc-----CCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh---
Q 009517          310 EVYQENVYV-----PEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS---  381 (533)
Q Consensus       310 e~y~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~---  381 (533)
                      |+|.++.+.     |. +...+..   .    ..+ ..+++.|++|++.  +|.++||+++   .++.+........   
T Consensus       276 ea~~~~~~~~~~~~g~-~~~~~~~---~----~~g-~d~~~~s~~K~l~--~~~~~g~~~~---~~~~~~~~~~~~~~~~  341 (514)
T 3mad_A          276 ACLGGFILPWAERLGY-PVPPFDF---R----LEG-VTSVSADTHKYGY--GAKGTSVILY---RRPDLLHYQYFIAADW  341 (514)
T ss_dssp             CTTTTTTHHHHHHTTC-CCCCCST---T----STT-CCEEEECTTTTTC--CCSSCEEEEE---SSHHHHTTTCEEESSC
T ss_pred             cccccccchhHHhcCC-CCCcccc---c----CCC-CcEEEECchhccC--CCCCeEEEEE---eCHHHhcccccccccc
Confidence            999987541     11 0011100   0    112 2477889999863  5789999988   4444332211000   


Q ss_pred             -------c--cccCC---hHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeE
Q 009517          382 -------V--NLCSN---ISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMY  449 (533)
Q Consensus       382 -------~--~~~~~---~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~  449 (533)
                             .  ..+.+   .+++.++...+            -...++++.+++.++++++.+.|++++|+.++.+..++ 
T Consensus       342 ~~~~~~~~~~~gs~~~~~~~a~~aal~~l------------~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~-  408 (514)
T 3mad_A          342 PGGLYFSPTFAGSRPGALSATAWAAMLSL------------GEEGYLDATRRILQAADRLKAGVRAIPSLKILGDPLWV-  408 (514)
T ss_dssp             TTCSEEESSSCSSCCHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCCSSE-
T ss_pred             CCCcccCCccCCCCchHHHHHHHHHHHHH------------hHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCCeEE-
Confidence                   0  11122   22333333332            12345677788889999999999998899988776654 


Q ss_pred             EecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec---CCcCcHHHHHHHHHHHHHH
Q 009517          450 LFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL---PQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~---~~~e~i~~~~~~l~~~l~~  526 (533)
                      +|+...  .          . +...+. +.|.++||.+ +|..|.     +++|+++.   .+++++++++++|++++++
T Consensus       409 ~~~~~~--~----------~-~~~~l~-~~L~~~Gi~v-~g~~~~-----~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~  468 (514)
T 3mad_A          409 IAVASD--E----------L-NIYQVM-EEMAGRGWRL-NGLHRP-----PAFHVALTLRHTEPGVVDRFLADLQDAVAQ  468 (514)
T ss_dssp             EEEECS--S----------S-CHHHHH-HHHHTTTCBC-EEETTT-----TEEEEECCGGGGSTTHHHHHHHHHHHHHHH
T ss_pred             EEEeCC--C----------C-CHHHHH-HHHHhcCCEe-ccCCCC-----CeEEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence            443322  0          1 233333 4556679988 555442     27999985   4568999999999999988


Q ss_pred             HHHH
Q 009517          527 FMDK  530 (533)
Q Consensus       527 ~~~~  530 (533)
                      +.++
T Consensus       469 ~~~~  472 (514)
T 3mad_A          469 VRAH  472 (514)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            7653

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=99.96  E-value=9.5e-30  Score=261.72  Aligned_cols=326  Identities=10%  Similarity=0.048  Sum_probs=205.5

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhc---cCCCC-
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI---RSEND-  216 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~---~~~gd-  216 (533)
                      |+.+++++.+.+.+........|....+..++.+++.+.+.+.+|  .++++|++|+|+++|+..+++.+.   .++|| 
T Consensus        33 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~~~g~t~al~~~~~~l~~~~~~~gd~  110 (400)
T 3vax_A           33 DQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVS--AEPDELIFTSGATESNNIALLGLAPYGERTGRR  110 (400)
T ss_dssp             CHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTT--CCGGGEEEESCHHHHHHHHHHTTHHHHHHHTCC
T ss_pred             CHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcC--CCCCcEEEeCCHHHHHHHHHHHHHHhhccCCCC
Confidence            788999988887642110111222222223333444444444445  557899999999999999999874   14799 


Q ss_pred             eEEEcCCcCcchHHHHHH---hCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHH
Q 009517          217 GILCPIPQYPLYSASIAL---HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQR  293 (533)
Q Consensus       217 ~Vlv~~p~~~~~~~~~~~---~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~  293 (533)
                      +|+++.++|+.+...+..   .|++++.+++++  ++.+|+++|++++++      ++++|++++|+||||.+++   ++
T Consensus       111 ~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~  179 (400)
T 3vax_A          111 HIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGP--SGRISVEGVMERLRP------DTLLVSLMHVNNETGVIQP---VA  179 (400)
T ss_dssp             EEEEETTSCHHHHHHHHHHHTTTCEEEEECCCT--TCCCCHHHHHTTCCT------TEEEEECCSBCTTTCBBCC---HH
T ss_pred             EEEECccccHhHHHHHHHHHhcCCeEEEEccCC--CCCcCHHHHHHhcCC------CceEEEEECCCCCceeeCc---HH
Confidence            999999999987766655   599999999875  568899999999976      7999999999999999999   78


Q ss_pred             HHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEE-EecCCHHH
Q 009517          294 AIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYME-VTGFSAEV  372 (533)
Q Consensus       294 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~-~~~~~~~~  372 (533)
                      +|+++|++||+++|+||+|.....    + ..       +.. ..+   +++.|+||.+ |++|  +|+++ +.  ++++
T Consensus       180 ~i~~la~~~~~~li~D~a~~~~~~----~-~~-------~~~-~~d---~~~~s~~K~~-g~~g--~g~~~~~~--~~~~  238 (400)
T 3vax_A          180 ELAQQLRATPTYLHVDAAQGYGKV----P-GD-------LTT-PID---MISISGHKIG-APKG--VGALVTRR--REEM  238 (400)
T ss_dssp             HHHHHHTTSSCEEEEECTTTTTTS----G-GG-------GGS-CCS---EEEEETGGGT-SCSS--CEEEEECB--CSSS
T ss_pred             HHHHHHHhcCCEEEEEhhhhcCCC----C-cC-------hhh-cCc---EEEEeHHHhC-CCCc--eEEEEEec--chhc
Confidence            999999999999999999974211    1 11       100 123   7799999965 6555  55555 51  2111


Q ss_pred             H---HHHHHhh-------h-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceE
Q 009517          373 R---EQIYKVA-------S-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITC  441 (533)
Q Consensus       373 ~---~~l~~~~-------~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~  441 (533)
                      .   ..+....       . ...+.+..++.++..+++          ...+.+++++++++++++++.+.|+ .+|+.+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~----------~~~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~  307 (400)
T 3vax_A          239 DDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAK----------IFEAEHAQWQVAAQDLRSRLLAGLA-STSFQV  307 (400)
T ss_dssp             TTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHH----------HHHHSHHHHHHHHHHHHHHHHHHHT-TTTCEE
T ss_pred             cccccccCceecCCCceeeeecCCCCHHHHHHHHHHHH----------HHHhhHHHHHHHHHHHHHHHHHhhC-CCCEEE
Confidence            1   1111110       1 234456666666666553          1223467788899999999999999 789998


Q ss_pred             ecCCc---eeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCC-------------C---CCceE
Q 009517          442 NKAEG---AMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQV-------------P---GTWHF  502 (533)
Q Consensus       442 ~~~~g---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~-------------~---g~~~i  502 (533)
                      ..+.+   +.++++.+.  .          . +...+. +.|. +||.+.+|..|...             .   ..++|
T Consensus       308 ~~~~~~~~~~~~~~~~~--~----------~-~~~~l~-~~L~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~i  372 (400)
T 3vax_A          308 NGDQDHVVPHILNLSFE--D----------V-DAEAFL-VTLK-DLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSL  372 (400)
T ss_dssp             CSCTTSBCTTEEEEECT--T----------C-CHHHHH-HHHH-HHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEE
T ss_pred             eCCcccCCCCEEEEEeC--C----------C-CHHHHH-HHHh-cCcEEEecccccCCCCCccHHHHHcCCCccccCceE
Confidence            87764   223333232  1          1 233444 4455 89999998766421             0   02599


Q ss_pred             EEEe-c--CCcCcHHHHHHHHHHHHHH
Q 009517          503 RCTI-L--PQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       503 Ris~-~--~~~e~i~~~~~~l~~~l~~  526 (533)
                      ||++ +  .+++++++++++|++++++
T Consensus       373 Rls~~~~~~t~e~i~~~~~~l~~~~~~  399 (400)
T 3vax_A          373 RFSWTPGQATDLDVEELARGVAKLKPS  399 (400)
T ss_dssp             EEEEEEC--------------------
T ss_pred             EEEccCCCCCHHHHHHHHHHHHHHhcc
Confidence            9999 6  6788999999999988764

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=99.96  E-value=1.1e-28  Score=256.86  Aligned_cols=326  Identities=14%  Similarity=0.051  Sum_probs=215.2

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHH---hccCCCCe
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQL---LIRSENDG  217 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~---l~~~~gd~  217 (533)
                      ++++++++.+++.+..   ...|.     .++++++++.+.+.++   ..++|++++|+++|+..+++.   +.  ++++
T Consensus        74 ~~~v~~a~~~~~~~~~---~~~~~-----~~~~~~l~~~la~~~~---~~~~v~~~~sgseA~~~al~~ar~~~--~~~~  140 (434)
T 2epj_A           74 HPRVLEAVEEALARGW---LYGAP-----GEAEVLLAEKILGYVK---RGGMIRFVNSGTEATMTAIRLARGYT--GRDL  140 (434)
T ss_dssp             CHHHHHHHHHHHHTCS---CCSSC-----CHHHHHHHHHHHHHHC---TTCEEEEESSHHHHHHHHHHHHHHHH--CCCE
T ss_pred             CHHHHHHHHHHHHhCC---CCCCC-----CHHHHHHHHHHHHhCC---CCCEEEEeCCHHHHHHHHHHHHHHhh--CCCe
Confidence            7899999999987621   12332     2334444444444332   368999999999999999997   43  5678


Q ss_pred             EEEcCCcCcchHHHHH--------------HhCC------eEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEe
Q 009517          218 ILCPIPQYPLYSASIA--------------LHGG------TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI  277 (533)
Q Consensus       218 Vlv~~p~~~~~~~~~~--------------~~g~------~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~  277 (533)
                      |++.+|+|+++...+.              ..|.      .++.++.       .|+++|++++++.   +.++++|+++
T Consensus       141 vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~le~~l~~~---~~~~~~vi~e  210 (434)
T 2epj_A          141 ILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY-------NDVEALERVFAEY---GDRIAGVIVE  210 (434)
T ss_dssp             EEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEET-------TCHHHHHHHHHHH---GGGEEEEEEC
T ss_pred             EEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC-------CCHHHHHHHHHhC---CCCEEEEEEe
Confidence            9999999998654221              1132      2444543       2899999999853   1257777666


Q ss_pred             CCCCCCccCC-CHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCC
Q 009517          278 NPGNPTGQVL-AEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGEC  356 (533)
Q Consensus       278 ~p~NPtG~~~-s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~  356 (533)
                      ..+||||.++ +++++++|.++|++||+++|+||+|++| +.+.  ...+..  .++   .+|     +.||||.+ |. 
T Consensus       211 p~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~--~~~~~~--~~~---~~d-----i~s~sK~l-~~-  275 (434)
T 2epj_A          211 PVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGL--EGAQGY--FNI---EGD-----IIVLGKII-GG-  275 (434)
T ss_dssp             SSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTT-TSST--THHHHH--HTC---CCS-----EEEEEGGG-GT-
T ss_pred             CCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhce-eCCc--chhhHH--hCC---CCC-----eeeecchh-cC-
Confidence            5577899765 7999999999999999999999999987 3332  111111  122   456     45999999 54 


Q ss_pred             CCeeEEEEEecCCHHHHHHHHHh----hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009517          357 GKRGGYMEVTGFSAEVREQIYKV----ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDA  432 (533)
Q Consensus       357 G~riG~v~~~~~~~~~~~~l~~~----~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  432 (533)
                      |+|+||+++   ++++++.+...    ...++++++++++++.++|+           ..++ +.+.++++++++++++.
T Consensus       276 G~~~G~v~~---~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~-----------~~~~-~~~~~~~~~~~~~l~~~  340 (434)
T 2epj_A          276 GFPVGAVAG---SREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLK-----------ALEE-EPVYSVSREAAKALEEA  340 (434)
T ss_dssp             TSSCEEEEE---CHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHH-----------HHHH-SCHHHHHHHHHHHHHHH
T ss_pred             Ccceeeeee---cHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHH-----------HHHh-cCHHHHHHHHHHHHHHH
Confidence            999999998   88988877652    22567889999998888774           1121 34566677777777777


Q ss_pred             HhcC---CCc-eEecCCceeEEecccCC-CHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec
Q 009517          433 FNSL---EGI-TCNKAEGAMYLFPRIQL-PEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL  507 (533)
Q Consensus       433 L~~~---~g~-~~~~~~gg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~  507 (533)
                      |+++   .++ ..+++.|. ++|+.+.. +.....+...........++..+ .++||.+.||..       ..+|+++.
T Consensus       341 L~~~~~~~~~~~~~~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~-------~~~~~~~~  411 (434)
T 2epj_A          341 ASEVLDRTGLPYTINRVES-MMQLFIGVEEVSNAAQARKADKKFYVKLHEEM-LRRGVFIAPSNL-------EAVFTGLP  411 (434)
T ss_dssp             HHHHHHHHTCCEEEEEETT-EEEEEETCSCCSSHHHHTTSCHHHHHHHHHHH-HHTTEECCSSTT-------SCEECCTT
T ss_pred             HHHHHhhCCCcEEEEEeee-EEEEEEeCCCcccchhccccCHHHHHHHHHHH-HHCCeEEeccCC-------CcEEEecc
Confidence            7664   133 33455555 55655542 10000000000000123444444 468999998642       15778777


Q ss_pred             CCcCcHHHHHHHHHHHHHHHH
Q 009517          508 PQEDKIPAIVTRLTDFHKNFM  528 (533)
Q Consensus       508 ~~~e~i~~~~~~l~~~l~~~~  528 (533)
                      .+++++++++++|+++++++.
T Consensus       412 ~t~e~i~~~l~~l~~~l~~~~  432 (434)
T 2epj_A          412 HQGEALEIAVEGLRSSLKTVL  432 (434)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999988763

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=99.96  E-value=6.5e-29  Score=259.63  Aligned_cols=323  Identities=11%  Similarity=0.103  Sum_probs=218.2

Q ss_pred             CHHHH-H-HHHH---HHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhc---c
Q 009517          141 SADSI-E-RAWQ---ILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI---R  212 (533)
Q Consensus       141 p~~v~-~-~~~~---~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~---~  212 (533)
                      +++++ + ++.+   ++..... ....|.. ....++++.+++++    + ....++|++|+|+++|++.+++.+.   .
T Consensus        72 ~p~v~~~~A~~~~~~~~~~~~~-~~~~~~~-~~~~~la~~la~~~----~-~~~~~~v~~~~~gseA~~~aik~a~~~~~  144 (449)
T 2cjg_A           72 PPALVDDREFHAELMQAALNKP-SNSDVYS-VAMARFVETFARVL----G-DPALPHLFFVEGGALAVENALKAAFDWKS  144 (449)
T ss_dssp             CHHHHTCHHHHHHHHHHHTCCC-CTTTCCC-HHHHHHHHHHHHHH----C-CTTCCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhcCC-CCcccCC-HHHHHHHHHHHHhc----C-CCCCCEEEEeCchHHHHHHHHHHHHHHhc
Confidence            68899 8 8888   7765211 0011222 11345555555554    3 1357899999999999999998653   1


Q ss_pred             ---------C-CCCeEEEcCCcCcchHHHHHHh---------CC-----eEEEEecCC--CCC------CCCCHHHHHHH
Q 009517          213 ---------S-ENDGILCPIPQYPLYSASIALH---------GG-----TLVPYYLDE--ATG------WGLETSEVKKQ  260 (533)
Q Consensus       213 ---------~-~gd~Vlv~~p~~~~~~~~~~~~---------g~-----~~~~v~~~~--~~~------~~ld~~~l~~~  260 (533)
                               . +|++|++++|+|+++...+...         +.     .++.+|.++  ...      ...+++.|+++
T Consensus       145 ~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~  224 (449)
T 2cjg_A          145 RHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAA  224 (449)
T ss_dssp             HHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHH
Confidence                     1 2899999999999865533222         11     455555543  100      01456668888


Q ss_pred             HHHHHhcCCCeeEEEEeCCCCCCc-cCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCC
Q 009517          261 LEAAKAKGITVRALVVINPGNPTG-QVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKD  339 (533)
Q Consensus       261 i~~~~~~g~~~~~iil~~p~NPtG-~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (533)
                      |++.   ++++++|+++.++|||| .+++++++++|+++|++||+++|+||+|+++.+.|.  ...+..+  ++   .+|
T Consensus       225 i~~~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~--~~~~~~~--~~---~~d  294 (449)
T 2cjg_A          225 FETR---PHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGT--AWAYQQL--DV---APD  294 (449)
T ss_dssp             HHHS---TTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SSTHHHH--TC---CCS
T ss_pred             HHhc---CCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCc--ceeeccc--CC---Cce
Confidence            8641   12688877666689999 599999999999999999999999999999877653  2222221  22   455


Q ss_pred             ceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHH-----Hhh-hccccCChHHHHHHHHHcCCCCCCChhHHHHHH
Q 009517          340 ISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY-----KVA-SVNLCSNISGQILASLVMSPPKVGDESYESYCA  413 (533)
Q Consensus       340 ~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~-----~~~-~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~  413 (533)
                           +.||||.+      |+||+++   ++++++.+.     ... ..++++++++++++.++|+           ..+
T Consensus       295 -----i~t~sK~l------~iG~~~~---~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~aa~aal~-----------~~~  349 (449)
T 2cjg_A          295 -----IVAFGKKT------QVCGVMA---GRRVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILE-----------VIE  349 (449)
T ss_dssp             -----EEEECGGG------SSEEEEE---CGGGGGSTTCTTTSTTSSCCSSSSCHHHHHHHHHHHH-----------HHH
T ss_pred             -----EEEecCcc------cEEEEEE---CHHHhhhhhhcccCCcccccCCCCCHHHHHHHHHHHH-----------HHH
Confidence                 34799965      7999998   888877522     122 2568889999999988874           111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcC----CC-ceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEE
Q 009517          414 ERDGILSSLARRAKTLEDAFNSL----EG-ITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLV  488 (533)
Q Consensus       414 ~~~~~~~~~~~~~~~l~~~L~~~----~g-~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~  488 (533)
                      . +.+.++++++++++++.|+++    ++ +..+++.|.|+. +++....            ....++..++ ++||.+.
T Consensus       350 ~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g~~~~-~~~~~~~------------~~~~~~~~l~-~~Gv~v~  414 (449)
T 2cjg_A          350 A-EGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCA-FSLPTTA------------DRDELIRQLW-QRAVIVL  414 (449)
T ss_dssp             H-HTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEETTEEE-EECSSHH------------HHHHHHHHHH-HTTEECE
T ss_pred             h-ccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEeeccEEEE-EEECChH------------HHHHHHHHHH-HCCeEEe
Confidence            1 345677788888888888753    55 767778777654 3443110            1234555555 5899999


Q ss_pred             cCCCCCCCCCCceEEEEe--cCCcCcHHHHHHHHHHHHHHH
Q 009517          489 PGSGFGQVPGTWHFRCTI--LPQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       489 pg~~f~~~~g~~~iRis~--~~~~e~i~~~~~~l~~~l~~~  527 (533)
                      |+.       .++|||++  ..++++|++++++|+++++++
T Consensus       415 ~~g-------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~  448 (449)
T 2cjg_A          415 PAG-------ADTVRFRPPLTVSTAEIDAAIAAVRSALPVV  448 (449)
T ss_dssp             EET-------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             cCC-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            852       24999976  489999999999999998764

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=99.96  E-value=1.9e-28  Score=254.91  Aligned_cols=326  Identities=13%  Similarity=0.096  Sum_probs=210.6

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCC----cccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc----
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHS----QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR----  212 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~----~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~----  212 (533)
                      |+.+++++.+.+..........|...    ....++|++++++++      +++++|++|+|+++++..+++.+..    
T Consensus        31 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g------~~~~~v~~~~g~t~a~~~~~~~~~~~~~~  104 (432)
T 3a9z_A           31 EPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIG------GKPQDIIFTSGGTESNNLVIHSTVRCFHE  104 (432)
T ss_dssp             CHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHT------CCGGGEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcC------CCcCeEEEeCChHHHHHHHHHHHHhhhhh
Confidence            78999999888865211001122211    123688888888874      5678999999999999999998741    


Q ss_pred             ---CCCCeEEEcCCcCcch-----------------HHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCee
Q 009517          213 ---SENDGILCPIPQYPLY-----------------SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVR  272 (533)
Q Consensus       213 ---~~gd~Vlv~~p~~~~~-----------------~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~  272 (533)
                         ++||+|+++.|+|+.|                 ....+..|.+++.++++++ ++.+|+++|++++++      +++
T Consensus       105 ~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~-~~~~d~~~l~~~i~~------~~~  177 (432)
T 3a9z_A          105 QQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKV-NGQVEVEDILAAVRP------TTC  177 (432)
T ss_dssp             HHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTT-TSSCCHHHHHHTCCT------TEE
T ss_pred             ccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcc-cCCcCHHHHHHhccC------Cce
Confidence               2799999999999876                 2334457999999998753 457899999999875      799


Q ss_pred             EEEEeCCCCCCccCCCHHHHHHHHHHHHHcC----------CEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceE
Q 009517          273 ALVVINPGNPTGQVLAEENQRAIVDFCKKEG----------LVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL  342 (533)
Q Consensus       273 ~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~----------~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  342 (533)
                      +|++++|+||||.+++   +++|.++|++++          +++|+||+|..+.    . ..++..    +   ..|   
T Consensus       178 ~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~----~-~~~~~~----~---~~d---  239 (432)
T 3a9z_A          178 LVTIMLANNETGVIMP---ISEISRRIKALNQIRAASGLPRVLVHTDAAQALGK----R-RVDVED----L---GVD---  239 (432)
T ss_dssp             EEECCSBCTTTCBBCC---HHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTT----S-CCCHHH----H---CCS---
T ss_pred             EEEEECcccCcccccC---HHHHHHHHHhcCcccccccCCceEEEEEchhhhCC----c-ccChhh----c---CCC---
Confidence            9999999999999999   678899999999          9999999997521    1 123222    2   345   


Q ss_pred             EEEecCCccCCCCCCCeeEEEEEecCCHHH-HHHHHHh-------hh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHH
Q 009517          343 VSFQSVSKGYYGECGKRGGYMEVTGFSAEV-REQIYKV-------AS-VNLCSNISGQILASLVMSPPKVGDESYESYCA  413 (533)
Q Consensus       343 i~i~S~SK~~~gl~G~riG~v~~~~~~~~~-~~~l~~~-------~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~  413 (533)
                      +++.|+||.+    |.|+||+++   ++++ ...+...       .. ..++++..++.++.++++          ...+
T Consensus       240 ~~~~s~~K~~----g~~~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~----------~~~~  302 (432)
T 3a9z_A          240 FLTIVGHKFY----GPRIGALYV---RGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAAD----------LVSE  302 (432)
T ss_dssp             EEEEEGGGTT----CCSCEEEEE---TTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHH----------HHHH
T ss_pred             EEEEehhHhc----CCcceEEEE---ccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHH----------HHHh
Confidence            5689999975    457999998   6554 2222211       11 234567777777766663          1223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCceEe--cC-----CceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceE
Q 009517          414 ERDGILSSLARRAKTLEDAFNSLEGITCN--KA-----EGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIV  486 (533)
Q Consensus       414 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~--~~-----~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~  486 (533)
                      .++++.++++++++++.+.|++++|+.+.  .+     ..+..+++.+...          +. +...+. ..+  .+|.
T Consensus       303 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-~~~~~~-~~l--~~i~  368 (432)
T 3a9z_A          303 NCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGS----------QL-RGYMVL-AQC--QTLL  368 (432)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECST----------TC-CHHHHH-HHC--SSEE
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCC----------CC-cHHHHH-HHh--cCeE
Confidence            46778888999999999999886565432  32     1111222112200          00 122222 222  3788


Q ss_pred             EEcCCCCCCC--------------C---CCceEEEEec--CCcCcHHHHHHHHHHHHHHHH
Q 009517          487 LVPGSGFGQV--------------P---GTWHFRCTIL--PQEDKIPAIVTRLTDFHKNFM  528 (533)
Q Consensus       487 v~pg~~f~~~--------------~---g~~~iRis~~--~~~e~i~~~~~~l~~~l~~~~  528 (533)
                      +.+|..|...              .   +.++|||+++  .+++++++++++|+++++++.
T Consensus       369 ~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~~~  429 (432)
T 3a9z_A          369 ASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQLE  429 (432)
T ss_dssp             CBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EeccccccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            8887655321              0   1258999997  489999999999999988764

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=99.96  E-value=3e-29  Score=254.23  Aligned_cols=316  Identities=14%  Similarity=0.108  Sum_probs=215.6

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCC---CcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCCh-HHHHHHHHHHhccCC--
Q 009517          141 SADSIERAWQILDQIPGRATGAYSH---SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGA-SPAVHMMMQLLIRSE--  214 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~---~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~-~~al~~~~~~l~~~~--  214 (533)
                      |+.+++++.+.+.+..+.....|..   ..+..++.+++.+.+.+.+|.+ ++++|++|+|+ ++|+..++..+. .+  
T Consensus        15 p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~~v~~~~g~gt~al~~~~~~l~-~~~~   92 (360)
T 1w23_A           15 PKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIP-NDYQILFLQGGASLQFTMLPMNLL-TKGT   92 (360)
T ss_dssp             CHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCC-TTEEEEEESSHHHHHHHHHHHHHC-CTTC
T ss_pred             CHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCC-CCceEEEECCcchHHHHHHHHHhc-CCCC
Confidence            7899999988775421101122322   3344445555555555555643 35799999999 999999999987 44  


Q ss_pred             -CCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHH-HHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHH
Q 009517          215 -NDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKK-QLEAAKAKGITVRALVVINPGNPTGQVLAEENQ  292 (533)
Q Consensus       215 -gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~-~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l  292 (533)
                       ||.|+++.++|..+ ..++..| +++.++++++.+ .+|++++++ ++++      ++++|++++|+||||.+++  ++
T Consensus        93 ~g~~vi~~~~~~~~~-~~~~~~g-~~~~v~~~~~~~-~~d~~~l~~~~i~~------~~k~v~~~~~~nptG~~~~--~i  161 (360)
T 1w23_A           93 IGNYVLTGSWSEKAL-KEAKLLG-ETHIAASTKANS-YQSIPDFSEFQLNE------NDAYLHITSNNTIYGTQYQ--NF  161 (360)
T ss_dssp             EEEEEECSHHHHHHH-HHHHTTS-EEEEEEECGGGT-SCSCCCGGGCCCCT------TEEEEEEESEETTTTEECS--SC
T ss_pred             cccEEEecchhHHHH-HHHHHhC-CeEEeecccccC-cCCccchHhhccCC------CCCEEEEeCCCCCcceecc--cc
Confidence             56677777776543 3466779 999999875333 378888988 7754      7999999999999999987  22


Q ss_pred             HHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHH
Q 009517          293 RAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEV  372 (533)
Q Consensus       293 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~  372 (533)
                            +++||+++|+||+|..+..    + .++    ..     -+   +++.|+||.+ |++|  +||+++   ++++
T Consensus       162 ------~~~~~~~li~D~a~~~~~~----~-~~~----~~-----~d---i~~~s~sK~~-~~~G--~G~~~~---~~~~  212 (360)
T 1w23_A          162 ------PEINHAPLIADMSSDILSR----P-LKV----NQ-----FG---MIYAGAQKNL-GPSG--VTVVIV---KKDL  212 (360)
T ss_dssp             ------CCCCSSCEEEECTTTTTSS----C-CCG----GG-----CS---EEEEETTTTT-SCTT--CEEEEE---EHHH
T ss_pred             ------cccCCceEEEechhhcCCC----C-cCc----cc-----CC---EEEEEccccc-CCCC--cEEEEE---cHHH
Confidence                  2379999999999986432    1 111    11     13   7799999998 7676  899998   7887


Q ss_pred             HHHHHHhh-------------hccccCChHHHHHHHHHcCCCCCCChhHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCC
Q 009517          373 REQIYKVA-------------SVNLCSNISGQILASLVMSPPKVGDESYESYCA--ERDGILSSLARRAKTLEDAFNSLE  437 (533)
Q Consensus       373 ~~~l~~~~-------------~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~  437 (533)
                      ++.+.+..             ....+++..++.++..+++          ...+  .+++++++++++++++.+.|++++
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~----------~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  282 (360)
T 1w23_A          213 LNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLD----------WIKDLGGAEAIAKQNEEKAKIIYDTIDESN  282 (360)
T ss_dssp             HCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHH----------HHHHTTHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHH----------HHHHhcCHHHHHHHHHHHHHHHHHHHHHcc
Confidence            76554321             1113456666666666553          1112  357788889999999999999986


Q ss_pred             Cc-eEe-cC--CceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcC
Q 009517          438 GI-TCN-KA--EGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQED  511 (533)
Q Consensus       438 g~-~~~-~~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e  511 (533)
                      ++ ... .+  .+++++|+.++  ...          +...++.+ |.++||.+.||..+     .++|||+++  .+++
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~--~~~----------~~~~~~~~-l~~~gi~~~~~~~~-----~~~iRis~~~~~~~~  344 (360)
T 1w23_A          283 GFYVGHAEKGSRSLMNVTFNLR--NEE----------LNQQFLAK-AKEQGFVGLNGHRS-----VGGCRASIYNAVPID  344 (360)
T ss_dssp             TSSEESSCGGGBCSSEEEEECS--SHH----------HHHHHHHH-HHHTTEESCBCCTT-----TCSEEEECCTTSCHH
T ss_pred             CcccccCCchhccCcEEEEEcC--CCc----------cHHHHHHH-HHHCCeeeecCCCC-----CCeEEEEecCCCCHH
Confidence            55 543 23  35667786553  210          12334434 66789999998764     238999997  6888


Q ss_pred             cHHHHHHHHHHHHHH
Q 009517          512 KIPAIVTRLTDFHKN  526 (533)
Q Consensus       512 ~i~~~~~~l~~~l~~  526 (533)
                      ++++++++|++++++
T Consensus       345 ~i~~~~~~l~~~~~~  359 (360)
T 1w23_A          345 ACIALRELMIQFKEN  359 (360)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999887653

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.9e-28  Score=257.19  Aligned_cols=332  Identities=11%  Similarity=0.020  Sum_probs=239.9

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC-----CC
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS-----EN  215 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~-----~g  215 (533)
                      ++.+.+.+.+++..........|....|..++++++++++.+.+|.+.+++++++++|+++++..++++++ +     +|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~-~~~~~~~g  155 (497)
T 3mc6_A           77 GDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAK-MYALHHRG  155 (497)
T ss_dssp             CHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHH-HHHHHHSC
T ss_pred             chHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHH-HHHHhcCC
Confidence            46677777777765332224456667788899999999999999977668899999999999999999986 3     45


Q ss_pred             ---CeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHH
Q 009517          216 ---DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQ  292 (533)
Q Consensus       216 ---d~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l  292 (533)
                         ++|+++.|+|..+...+...|++++.+++++ +++.+|+++|+++|++      ++++|++++|+||||.+.+   +
T Consensus       156 ~~~~~Vi~~~~~h~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~------~~~~v~~~~p~nptG~~~~---l  225 (497)
T 3mc6_A          156 ITEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDP-TTYQVDLGKVKKFINK------NTVLLVGSAPNFPHGIADD---I  225 (497)
T ss_dssp             CSSCEEEEETTSCHHHHHHHHHSCCEEEEECBCT-TTCSBCTTTTGGGCCS------SEEEEEEETTCTTTCCCCS---C
T ss_pred             CCCceEEEeCCccHHHHHHHHHcCCeEEEEecCc-ccCcCCHHHHHHHHhh------CCEEEEEECCCCCCCcCCC---H
Confidence               8999999999999999999999999999875 3678999999999976      7999999999999999988   8


Q ss_pred             HHHHHHHHHcCCEEEEcccccccccc-----CCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEec
Q 009517          293 RAIVDFCKKEGLVLLADEVYQENVYV-----PEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTG  367 (533)
Q Consensus       293 ~~i~~l~~~~~~~lI~De~y~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~  367 (533)
                      ++|+++|++||+++|+|++|.++...     +......+..   .    ..+ ..+++.|++|.+.  +|.++||+++  
T Consensus       226 ~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~---~----~~g-~d~~~~s~~K~l~--~~~~~g~~~~--  293 (497)
T 3mc6_A          226 EGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDF---R----VPG-VTSISCDTHKYGF--APKGSSVIMY--  293 (497)
T ss_dssp             TTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCST---T----STT-CCEEEEETTTTTC--CCSSCEEEEC--
T ss_pred             HHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccc---c----CCC-CcEEEECchhhcC--CCCCceeEEe--
Confidence            89999999999999999999875432     1000001100   0    112 2367889999763  5788999987  


Q ss_pred             CCHHHHHHHHHhhhccc------cCC---------hHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009517          368 FSAEVREQIYKVASVNL------CSN---------ISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDA  432 (533)
Q Consensus       368 ~~~~~~~~l~~~~~~~~------~~~---------~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  432 (533)
                       +++.+..........+      .++         ..++.++...+.            ...++++.++..++++++++.
T Consensus       294 -~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~------------~~~~~~~~~~~~~~~~~l~~~  360 (497)
T 3mc6_A          294 -RNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMG------------ENGYIESCQEIVGAAMKFKKY  360 (497)
T ss_dssp             -SSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             -cCHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHh------------HHHHHHHHHHHHHHHHHHHHH
Confidence             5544433211111000      011         233444444331            133466777888889999999


Q ss_pred             Hhc-CCCceEe-cCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec-CC
Q 009517          433 FNS-LEGITCN-KAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-PQ  509 (533)
Q Consensus       433 L~~-~~g~~~~-~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-~~  509 (533)
                      |++ +||+.++ ++.++++.|. ..  .          . +...+. +.|.++||.+.++....      .+|+++. .+
T Consensus       361 L~~~~~g~~~~~~~~~~~v~~~-~~--~----------~-~~~~l~-~~L~~~Gi~v~~~~~~~------~~ri~~~~~t  419 (497)
T 3mc6_A          361 IQENIPDLDIMGNPRYSVISFS-SK--T----------L-NIHELS-DRLSKKGWHFNALQKPV------ALHMAFTRLS  419 (497)
T ss_dssp             HHHSCTTCEECSCCCSSEEEEE-CT--T----------T-THHHHH-HHHHTTTCBCEECCSSC------CEEEECCTTT
T ss_pred             HHhcCCCEEEecCCCeeEEEEe-CC--C----------C-CHHHHH-HHHHhCCEEEecCCCCC------eEEEEEeCCC
Confidence            999 6899887 4666666652 21  1          1 123333 55667899988754321      5799987 88


Q ss_pred             cCcHHHHHHHHHHHHHHHHH
Q 009517          510 EDKIPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       510 ~e~i~~~~~~l~~~l~~~~~  529 (533)
                      ++++++++++|+++++++.+
T Consensus       420 ~e~i~~~~~~L~~~l~~~~~  439 (497)
T 3mc6_A          420 AHVVDEICDILRTTVQELKS  439 (497)
T ss_dssp             TCTHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999987653

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.96  E-value=4.6e-27  Score=243.03  Aligned_cols=329  Identities=13%  Similarity=0.068  Sum_probs=218.2

Q ss_pred             CHHHHHHHHHHHhcCCCC---CccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCe
Q 009517          141 SADSIERAWQILDQIPGR---ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDG  217 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~---~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~  217 (533)
                      |+.+++++.+.+.+....   ....|.......++++.+.+.+.+.+|  .++++|++++| ++++..+++.++ ++||+
T Consensus        38 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g--~~~~~i~~~sG-t~a~~~~~~~~~-~~gd~  113 (417)
T 3n0l_A           38 LPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFN--CKFANVQPNSG-SQANQGVYAALI-NPGDK  113 (417)
T ss_dssp             CHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT--CSEEECCCSSH-HHHHHHHHHHHS-CTTCE
T ss_pred             CHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhC--CCCcceEeccH-HHHHHHHHHHhc-CCCCE
Confidence            788999988877442110   012233344445666666666666566  45667888887 799999999998 89999


Q ss_pred             EEEcCCcCcchHH---HHHHhC--CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHH
Q 009517          218 ILCPIPQYPLYSA---SIALHG--GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQ  292 (533)
Q Consensus       218 Vlv~~p~~~~~~~---~~~~~g--~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l  292 (533)
                      |+++.|+|+++..   .+...|  ..+++++++  .++.+|+++|++++++.     ++++|++++|+|  |.+.+   +
T Consensus       114 vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~~--G~~~~---l  181 (417)
T 3n0l_A          114 ILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVE--LDGRIDYEKVREIAKKE-----KPKLIVCGASAY--ARVID---F  181 (417)
T ss_dssp             EEEECC----------------CCSEEEEECCC--TTSSCCHHHHHHHHHHH-----CCSEEEECCSSC--CSCCC---H
T ss_pred             EEecccccccccchhhhhhhhcceeeeEeccCC--CCCCcCHHHHHHHHHhc-----CCeEEEECCccc--CccCC---H
Confidence            9999999987654   333333  445556555  46789999999999854     789999888887  77887   8


Q ss_pred             HHHHHHHHHcCCEEEEcccc-ccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCC-H
Q 009517          293 RAIVDFCKKEGLVLLADEVY-QENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFS-A  370 (533)
Q Consensus       293 ~~i~~l~~~~~~~lI~De~y-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~-~  370 (533)
                      ++|+++|++||+++|+||+| .++.+.+..+ ..+    .     ..|   |++.||||+|   +|+|+||+++   + +
T Consensus       182 ~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~-~~~----~-----~~d---i~~~s~sK~l---~g~~~G~~~~---~~~  242 (417)
T 3n0l_A          182 AKFREIADEIGAYLFADIAHIAGLVVAGEHP-SPF----P-----YAH---VVSSTTHKTL---RGPRGGIIMT---NDE  242 (417)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTHHHHHTTSSC-CCT----T-----TCS---EEEEESSTTT---CSCSCEEEEE---SCH
T ss_pred             HHHHHHHHHcCCEEEEECccchhhhhcccCC-Ccc----c-----cce---EEEeeCcccc---CCCCeeEEEE---CCH
Confidence            99999999999999999996 4544543211 110    0     123   7899999987   4889999998   6 7


Q ss_pred             HHHHHHHHhhh--ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEec-CCce
Q 009517          371 EVREQIYKVAS--VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNK-AEGA  447 (533)
Q Consensus       371 ~~~~~l~~~~~--~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~gg  447 (533)
                      ++++.+.....  ...+++...+.++..++..         ...++++.++++++++++++.+.|.+. |+.+.. +..+
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~---------~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~  312 (417)
T 3n0l_A          243 ELAKKINSAIFPGIQGGPLMHVIAAKAVGFKF---------NLSDEWKVYAKQVRTNAQVLANVLMDR-KFKLVSDGTDN  312 (417)
T ss_dssp             HHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHH---------HTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSS
T ss_pred             HHHHHHhhhhCCcccCCcHHHHHHHHHHHHHH---------HHhhhHHHHHHHHHHHHHHHHHHHHhC-CceeccCCCCc
Confidence            88888877654  2233444444444444321         011345677778888889999999885 888765 2345


Q ss_pred             eEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCC---CCCCceEEEEec------CCcCcHHHHHH
Q 009517          448 MYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ---VPGTWHFRCTIL------PQEDKIPAIVT  518 (533)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~---~~g~~~iRis~~------~~~e~i~~~~~  518 (533)
                      .++|+.+..+          +.  +...+.++|+++||.+.++..+..   .-....+|+++.      .++++|+++++
T Consensus       313 ~~~~~~~~~~----------~~--~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~  380 (417)
T 3n0l_A          313 HLVLMSFLDR----------EF--SGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSN  380 (417)
T ss_dssp             SEEEEECTTS----------SS--CHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHH
T ss_pred             eEEEEEcccC----------CC--CHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHH
Confidence            5677655411          11  223345677889999997654432   112247999984      46789999999


Q ss_pred             HHHHHHHH
Q 009517          519 RLTDFHKN  526 (533)
Q Consensus       519 ~l~~~l~~  526 (533)
                      +|++++++
T Consensus       381 ~l~~~l~~  388 (417)
T 3n0l_A          381 YIADILDD  388 (417)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            99998864

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=99.96  E-value=1.5e-28  Score=258.39  Aligned_cols=379  Identities=14%  Similarity=0.119  Sum_probs=245.1

Q ss_pred             ccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHH
Q 009517           64 KVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSAD  143 (533)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~  143 (533)
                      ++..+.++++..+..++..+...+.+         ++++..|.+-.                      +..  +...+++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~g~~---------~~~~~~~~~yl----------------------D~~--~~~~~~~   54 (467)
T 2oqx_A            8 RIRVIEPVKRTTRAYREEAIIKSGMN---------PFLLDSEDVFI----------------------DLL--TDSGTGA   54 (467)
T ss_dssp             CCCCCCCCCCCCHHHHHHHHHHTTSC---------GGGSCGGGCSE----------------------ECS--CCSSCSC
T ss_pred             heeeecccccccHHHHHHHHHHcCCC---------ceeccCCCeeE----------------------ecc--cCCCcHH
Confidence            45667777777778888888877766         78888887532                      100  0000256


Q ss_pred             HHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCC-----C---
Q 009517          144 SIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSE-----N---  215 (533)
Q Consensus       144 v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~-----g---  215 (533)
                      +++++.+++..    ....|++..+..+|+++++++++        .+++++|+|+++|+..++++++ ++     |   
T Consensus        55 v~~a~~~~l~~----~~~~y~~~~~~~~l~~~la~~~~--------~~~v~~t~~gt~A~~~al~~~~-~~~~~~~G~~~  121 (467)
T 2oqx_A           55 VTQSMQAAMMR----GDEAYSGSRSYYALAESVKNIFG--------YQYTIPTHQGRGAEQIYIPVLI-KKREQEKGLDR  121 (467)
T ss_dssp             CCHHHHHHTTS----CCCCSSSCHHHHHHHHHHHHHHC--------CSEEEEEC--CCSHHHHHHHHH-HHHHHHHCCCT
T ss_pred             HHHHHHHHhcc----CcceeccCchhHHHHHHHHHHhC--------cCcEEEcCCcHHHHHHHHHHHh-ccccccCCCCc
Confidence            67777777653    23468888889999999999984        3689999999999999999998 67     8   


Q ss_pred             -CeEEEcCCcCcchHHHHHHhCCeEEEEecC----CC----CCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCC-cc
Q 009517          216 -DGILCPIPQYPLYSASIALHGGTLVPYYLD----EA----TGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT-GQ  285 (533)
Q Consensus       216 -d~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~----~~----~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPt-G~  285 (533)
                       |+|++..+.|..+.......|+.++.....    ..    .++.+|+++|+++|++..  .+++++|++++|+||| |.
T Consensus       122 ~d~Ii~~~~h~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~--~~~~~~vi~~~~~n~~gG~  199 (467)
T 2oqx_A          122 SKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVG--PNNVPYIVATITSNSAGGQ  199 (467)
T ss_dssp             TTCEEEESSCCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHC--GGGCCCEEEESSBCGGGCB
T ss_pred             cceEEecccccccchhhhhccCcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcC--CCceeEEEEeccccCCCCc
Confidence             998877544455566666677776654211    11    245689999999998631  0268999999999998 89


Q ss_pred             CCCHHHHHHHHHHHHHcCCEEEEcccccc----------ccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCC
Q 009517          286 VLAEENQRAIVDFCKKEGLVLLADEVYQE----------NVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGE  355 (533)
Q Consensus       286 ~~s~~~l~~i~~l~~~~~~~lI~De~y~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl  355 (533)
                      +++.+++++|+++|++||+++|+|+++..          ..+.+.    +...+..++.. ..|   +++.|+||++ |+
T Consensus       200 ~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~----~~~~~~~~~~~-~~d---~~~~s~sK~~-g~  270 (467)
T 2oqx_A          200 PVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDW----TIEQITRETYK-YAD---MLAMSAKKDA-MV  270 (467)
T ss_dssp             CCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTS----CHHHHHHHHGG-GCS---EEEEESSSTT-CC
T ss_pred             cCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCc----cHHHHhhhhhc-cCC---eEEEeccccc-CC
Confidence            99999999999999999999999965532          123231    22232211000 134   3478999998 65


Q ss_pred             CCCeeEEEEEecCCHH-HHHHHHHhhh-----c---cccC-ChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 009517          356 CGKRGGYMEVTGFSAE-VREQIYKVAS-----V---NLCS-NISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR  425 (533)
Q Consensus       356 ~G~riG~v~~~~~~~~-~~~~l~~~~~-----~---~~~~-~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (533)
                      + . .||+++   +++ +++.+.++..     .   .++. +..+..++...+.          .+.+  +...++..++
T Consensus       271 ~-~-Gg~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~----------~~~~--~~~~~~~~~~  333 (467)
T 2oqx_A          271 P-M-GGLLCM---KDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLY----------DGMN--LDWLAYRIAQ  333 (467)
T ss_dssp             S-S-CEEEEE---CSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHH----------HTTC--HHHHHHHHHH
T ss_pred             C-C-ceEEEe---cChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhH----------hhhh--HHHHHHHHHH
Confidence            5 1 277776   555 4443333221     0   1111 1111111111111          1110  1233445677


Q ss_pred             HHHHHHHHhcCCCceEecCCceeEEecccCC--CHHHHHHHHhcCCCC----hHHHHHHHHHccceEEEcCCCC--CCCC
Q 009517          426 AKTLEDAFNSLEGITCNKAEGAMYLFPRIQL--PEKAIKAAEAEKTVP----DAFYCRRLLNATGIVLVPGSGF--GQVP  497 (533)
Q Consensus       426 ~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~ll~~~gV~v~pg~~f--~~~~  497 (533)
                      ++++.+.|+++ |+.++ +.+++++|++++.  +          +.+.    ...++..++.++||.+.||..|  +..+
T Consensus       334 ~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~  401 (467)
T 2oqx_A          334 VQYLVDGLEEI-GVVCQ-QAGGHAAFVDAGKLLP----------HIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDP  401 (467)
T ss_dssp             HHHHHHHHHHT-TCCEE-EECSSCEEEEHHHHST----------TSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCT
T ss_pred             HHHHHHHHHHC-CCeee-cCCceEEEEechhhcc----------cCCcccccHHHHHHHHHHhcCceecccccccccccc
Confidence            88999999988 88888 8888889976530  1          0111    2233555548899999995533  2101


Q ss_pred             --------CCceEEEEec---CCcCcHHHHHHHHHHHHHHHH
Q 009517          498 --------GTWHFRCTIL---PQEDKIPAIVTRLTDFHKNFM  528 (533)
Q Consensus       498 --------g~~~iRis~~---~~~e~i~~~~~~l~~~l~~~~  528 (533)
                              +.++|||++.   .++++|++++++|++++++..
T Consensus       402 ~~g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~~~  443 (467)
T 2oqx_A          402 KTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAA  443 (467)
T ss_dssp             TTCSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHSGG
T ss_pred             cccccccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhhhh
Confidence                    2359999997   788999999999999987643

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.96  E-value=4e-28  Score=247.35  Aligned_cols=309  Identities=16%  Similarity=0.173  Sum_probs=220.1

Q ss_pred             HHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHh-ccCCCCeEEEcC
Q 009517          144 SIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL-IRSENDGILCPI  222 (533)
Q Consensus       144 v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~~gd~Vlv~~  222 (533)
                      +.+++.+.+..      ..|.+..+..+|+++++++++        .+++++++|+++|+..+++.+ . ++||+|+++.
T Consensus        21 ~~~~~~~~~~~------~~~~~~~~~~~l~~~la~~~~--------~~~~~~~~~gt~a~~~~~~~~~~-~~gd~v~~~~   85 (374)
T 3uwc_A           21 YLNDLREFIKT------ADFTLGAELEKFEKRFAALHN--------APHAIGVGTGTDALAMSFKMLNI-GAGDEVITCA   85 (374)
T ss_dssp             HHHHHHHHHHH------TCCSSCHHHHHHHHHHHHHTT--------CSEEEEESCHHHHHHHHHHHTTC-CTTCEEEEES
T ss_pred             HHHHHHHHHHc------CCcccChhHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHcCC-CCCCEEEECC
Confidence            77777777765      247778889999999999974        337899999999999999999 7 7999999999


Q ss_pred             CcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHc
Q 009517          223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKE  302 (533)
Q Consensus       223 p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~  302 (533)
                      |+|+.+...+...|.+++.++++  .++.+|++++++++++      ++++|+   |+||||.+.+   +++|+++|++|
T Consensus        86 ~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~~~~------~~~~v~---~~n~~G~~~~---~~~i~~~~~~~  151 (374)
T 3uwc_A           86 NTFIASVGAIVQAGATPVLVDSE--NGYVIDPEKIEAAITD------KTKAIM---PVHYTGNIAD---MPALAKIAKKH  151 (374)
T ss_dssp             SSCHHHHHHHHHTTCEEEEECBC--TTSSBCGGGTGGGCCT------TEEEEC---CBCGGGCCCC---HHHHHHHHHHT
T ss_pred             CccHHHHHHHHHcCCEEEEEecC--CCCCcCHHHHHHhCCC------CceEEE---EeCCcCCcCC---HHHHHHHHHHc
Confidence            99999999999999999999987  4678999999998876      788877   9999999987   88999999999


Q ss_pred             CCEEEEcccccccc-ccCCCCcccHHHHHhhcCCCCCCceEEEEecCC--ccCCCCCCCeeEEEEEecCCHHHHHHHHHh
Q 009517          303 GLVLLADEVYQENV-YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVS--KGYYGECGKRGGYMEVTGFSAEVREQIYKV  379 (533)
Q Consensus       303 ~~~lI~De~y~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~S--K~~~gl~G~riG~v~~~~~~~~~~~~l~~~  379 (533)
                      |+++|+||+|..+. +.+. +..       .    ..|   +++.|||  |++ +.+|. +|++++  .++++.+.+...
T Consensus       152 ~~~li~D~~~~~g~~~~~~-~~~-------~----~~d---~~~~s~~~~K~l-~~~g~-~g~~~~--~~~~~~~~~~~~  212 (374)
T 3uwc_A          152 NLHIVEDACQTILGRINDK-FVG-------S----WGQ---FACFSLHPLKNL-NVWSD-AGVIIT--HSDEYAEKLRLY  212 (374)
T ss_dssp             TCEEEEECTTCTTCEETTE-ETT-------S----SSS---EEEEECSSSSSS-CCSSC-CEEEEE--SCHHHHHHHHHH
T ss_pred             CCEEEEeCCCccCceeCCe-ecc-------c----ccc---EEEEeCCCCCcC-Cccce-eEEEEe--CCHHHHHHHHHH
Confidence            99999999998643 2221 100       0    133   6678866  998 54465 888887  356787777765


Q ss_pred             hhc-------------cccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ceEec-C
Q 009517          380 ASV-------------NLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEG-ITCNK-A  444 (533)
Q Consensus       380 ~~~-------------~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g-~~~~~-~  444 (533)
                      ...             .+..+.+.+.+....+              +.++.+.++.+++.+.+.+.|.++++ +.+.. +
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~--------------~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  278 (374)
T 3uwc_A          213 RNHGLINRDVCVEYGINCRMDTIQAVIANRLM--------------NQLETITEKRRGIAHLYDQSFVDLSEFIDVPVRR  278 (374)
T ss_dssp             TBTTEEETTEESSCCCBCBCCHHHHHHHHHHG--------------GGHHHHHHHHHHHHHHHHHHTGGGTTTEECCCCC
T ss_pred             HhcCccccCccccccccCCCCHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhccCCCeEEeccCC
Confidence            421             1112333333333322              22344566667778888999988866 66542 3


Q ss_pred             CceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCC-----------CC---------CCceEEE
Q 009517          445 EGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ-----------VP---------GTWHFRC  504 (533)
Q Consensus       445 ~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~-----------~~---------g~~~iRi  504 (533)
                      .++...|..+.+..           .+...+ .+.|.++||.+.+|.....           ..         ..+.+||
T Consensus       279 ~~~~~~~~~~~~~~-----------~~~~~l-~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl  346 (374)
T 3uwc_A          279 EGVYHVFHIYVLRV-----------KYRDQL-FQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITL  346 (374)
T ss_dssp             TTEECCCSSEEEEE-----------TTHHHH-HHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEE
T ss_pred             CCCceeeEEEEEEc-----------CCHHHH-HHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEc
Confidence            33333332222110           112333 3556678999998862100           00         0148999


Q ss_pred             Eec--CCcCcHHHHHHHHHHHHHH
Q 009517          505 TIL--PQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       505 s~~--~~~e~i~~~~~~l~~~l~~  526 (533)
                      ++.  .++++|++++++|++++++
T Consensus       347 ~~~~~~t~edi~~~~~~l~~~l~~  370 (374)
T 3uwc_A          347 PAHPYLTEEEINYIIKKVREFYLE  370 (374)
T ss_dssp             CCCTTSCHHHHHHHHHHHHHHHHT
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHHh
Confidence            985  8899999999999998864

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=99.96  E-value=2.8e-27  Score=243.62  Aligned_cols=331  Identities=13%  Similarity=0.091  Sum_probs=220.5

Q ss_pred             CHHHHHHHHHHHhcCCCCC---ccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCe
Q 009517          141 SADSIERAWQILDQIPGRA---TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDG  217 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~---~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~  217 (533)
                      |+.+++++.+++.+.....   ...|.......++++++.+.+.+.+|  .+++.|++++| ++++..+++.++ ++||+
T Consensus        36 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g--~~~~~i~~~sG-t~a~~~a~~~~~-~~gd~  111 (405)
T 2vi8_A           36 SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFG--AEHANVQPHSG-AQANMAVYFTVL-EHGDT  111 (405)
T ss_dssp             CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT--CSEEECCCSSH-HHHHHHHHHHHC-CTTCE
T ss_pred             CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhC--CCceEEEecCc-HHHHHHHHHHhc-CCCCE
Confidence            7899999888775311000   01122222244565434444444445  33444445665 999999999998 89999


Q ss_pred             EEEcCCcCcchHH-H--HHHhC--CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHH
Q 009517          218 ILCPIPQYPLYSA-S--IALHG--GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQ  292 (533)
Q Consensus       218 Vlv~~p~~~~~~~-~--~~~~g--~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l  292 (533)
                      |+++.|+|+.+.. .  +...|  .+++.+++++ .++.+|+++|++++++.     ++++|++ +|+|. |...+   +
T Consensus       112 Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~d~~~l~~~i~~~-----~~~~v~~-~~~~~-~~~~~---l  180 (405)
T 2vi8_A          112 VLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDP-ETHVIDYDDVREKARLH-----RPKLIVA-AAAAY-PRIID---F  180 (405)
T ss_dssp             EEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCT-TTCSBCHHHHHHHHHHH-----CCSEEEE-CCSSC-CSCCC---H
T ss_pred             EEEecccccchhcccchhhhccceeEEEeccccc-ccCCcCHHHHHHHHHhc-----CCeEEEE-eCCCC-CccCC---H
Confidence            9999999988753 1  12333  4778887753 35789999999999864     6788776 55553 44444   8


Q ss_pred             HHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHH
Q 009517          293 RAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEV  372 (533)
Q Consensus       293 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~  372 (533)
                      ++|.++|++||+++|+||+|.......+.....   + .     ..|   +++.||||+++|++|   ||+++   ++++
T Consensus       181 ~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~---~-~-----~~d---i~~~s~sK~~~g~~g---G~~~~---~~~~  242 (405)
T 2vi8_A          181 AKFREIADEVGAYLMVDMAHIAGLVAAGLHPNP---V-P-----YAH---FVTTTTHKTLRGPRG---GMILC---QEQF  242 (405)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCS---T-T-----TCS---EEEEESSSTTCCCSC---EEEEE---CHHH
T ss_pred             HHHHHHHHHcCCEEEEEccccccccccCcCCCc---c-c-----cCC---EEEEeccccCCCCCC---eEEEE---cHHH
Confidence            999999999999999999998432222111111   1 0     234   779999999844566   99998   8899


Q ss_pred             HHHHHHhhh-ccccC-ChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecC-CceeE
Q 009517          373 REQIYKVAS-VNLCS-NISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKA-EGAMY  449 (533)
Q Consensus       373 ~~~l~~~~~-~~~~~-~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~-~gg~~  449 (533)
                      ++.+..... ...++ ++..+.++.++++.       .  ...+++.++++++++++++.+.|+++ |+.++.+ .++++
T Consensus       243 ~~~l~~~~~~~~~~~~~~~~~aa~~~al~~-------~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~  312 (405)
T 2vi8_A          243 AKQIDKAIFPGIQGGPLMHVIAAKAVAFGE-------A--LQDDFKAYAKRVVDNAKRLASALQNE-GFTLVSGGTDNHL  312 (405)
T ss_dssp             HHHHHHHHTTTTCSSCCHHHHHHHHHHHHH-------H--HSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSE
T ss_pred             HHHHHhhhcccccCCCCHHHHHHHHHHHHH-------H--HhhhHHHHHHHHHHHHHHHHHHHHhC-CCeEecCCCCceE
Confidence            888877643 33333 44444554455421       0  01345778888999999999999998 8888775 45778


Q ss_pred             EecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCC----CCCCCCCceEEEEec------CCcCcHHHHHHH
Q 009517          450 LFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSG----FGQVPGTWHFRCTIL------PQEDKIPAIVTR  519 (533)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~----f~~~~g~~~iRis~~------~~~e~i~~~~~~  519 (533)
                      +|+.++.+          +. +...+ .+.|.++||.+.||..    ++ ..+.+++||++.      .+++++++++++
T Consensus       313 ~~~~~~~~----------~~-~~~~~-~~~l~~~gi~v~~g~~~~~~~~-~~~~~~iRis~~~~~~~~~~~~~i~~~~~~  379 (405)
T 2vi8_A          313 LLVDLRPQ----------QL-TGKTA-EKVLDEVGITVNKNTIPYDPES-PFVTSGIRIGTAAVTTRGFGLEEMDEIAAI  379 (405)
T ss_dssp             EEEECGGG----------TC-CHHHH-HHHHHHHTEECEEECCTTCSSC-TTTCSEEEEECHHHHHTTCCHHHHHHHHHH
T ss_pred             EEEEccCC----------CC-CHHHH-HHHHHHcCceeccCcCccccCC-CCCCCceEEeeeeeeecCCCHHHHHHHHHH
Confidence            88665411          11 22333 3556778999999863    32 122348999997      478999999999


Q ss_pred             HHHHHHHH
Q 009517          520 LTDFHKNF  527 (533)
Q Consensus       520 l~~~l~~~  527 (533)
                      |++++++.
T Consensus       380 l~~~~~~~  387 (405)
T 2vi8_A          380 IGLVLKNV  387 (405)
T ss_dssp             HHHHHTCT
T ss_pred             HHHHHhcc
Confidence            99988654

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=99.96  E-value=2.7e-27  Score=245.15  Aligned_cols=326  Identities=14%  Similarity=0.160  Sum_probs=224.6

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHh-ccCCCCeEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL-IRSENDGIL  219 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~~gd~Vl  219 (533)
                      |+++++++.+.+.+.   ....|++..|..++++++++.+.+.+|.+    ++++++++++|+..+++.+ + ++||+|+
T Consensus        15 ~~~~~~a~~~~~~~~---~~~~~~~~~g~~~l~~~l~~~la~~~g~~----~~i~~~~gt~al~~~~~~~~~-~~gd~Vl   86 (418)
T 2c81_A           15 SDRTRRKIEEVFQSN---RWAISGYWTGEESMERKFAKAFADFNGVP----YCVPTTSGSTALMLALEALGI-GEGDEVI   86 (418)
T ss_dssp             CHHHHHHHHHHHHHT---CCSTTSBCCSSCCHHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHTTC-CTTCEEE
T ss_pred             CHHHHHHHHHHHhcC---CccccCcccCCHHHHHHHHHHHHHHhCCC----cEEEeCCHHHHHHHHHHHcCC-CCcCEEE
Confidence            789999999988762   12348887785555555555555555532    5667777889999999999 7 7999999


Q ss_pred             EcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHH
Q 009517          220 CPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC  299 (533)
Q Consensus       220 v~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~  299 (533)
                      ++.|+|+.+...+...|++++.+++++ .+|.+|+++|++++++      ++++|+++   ||||...+   +++|+++|
T Consensus        87 ~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~i~~------~~~~v~~~---~~~G~~~~---~~~i~~~~  153 (418)
T 2c81_A           87 VPSLTWIATATAVLNVNALPVFVDVEA-DTYCIDPQLIKSAITD------KTKAIIPV---HLFGSMAN---MDEINEIA  153 (418)
T ss_dssp             EESSSCTHHHHHHHHTTCEEEEECBCT-TTCSBCHHHHGGGCCT------TEEEECCB---CCTTCCCC---HHHHHHHH
T ss_pred             ECCCccHhHHHHHHHcCCEEEEEecCC-CCCCcCHHHHHHhhCC------CCeEEEEe---CCcCCccc---HHHHHHHH
Confidence            999999999999999999999999875 3678999999999875      78888864   58998866   89999999


Q ss_pred             HHcCCEEEEcccccccc-ccCCCCcccHHHHHhhcCCCCCCceEEEEecC--CccCCCCCCCeeEEEEEecCCHHHHHHH
Q 009517          300 KKEGLVLLADEVYQENV-YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSV--SKGYYGECGKRGGYMEVTGFSAEVREQI  376 (533)
Q Consensus       300 ~~~~~~lI~De~y~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~--SK~~~gl~G~riG~v~~~~~~~~~~~~l  376 (533)
                      +++|++||+||+|..+. +++. +..       .    ..+   +.+.||  ||.+ |+ | |+||+++  .++++++.+
T Consensus       154 ~~~~~~li~D~a~~~~~~~~~~-~~~-------~----~~~---~~~~s~s~~K~~-~~-g-~~g~~~~--~~~~l~~~~  213 (418)
T 2c81_A          154 QEHNLFVIEDCAQSHGSVWNNQ-RAG-------T----IGD---IGAFSCQQGKVL-TA-G-EGGIIVT--KNPRLFELI  213 (418)
T ss_dssp             HHTTCEEEEECTTCTTCEETTE-ETT-------S----SSS---EEEEECCTTSSS-CS-S-SCEEEEE--SCHHHHHHH
T ss_pred             HHCCCEEEEECcccccCccCCE-ecc-------c----ccc---eEEEeccCCccc-CC-C-CeEEEEE--CCHHHHHHH
Confidence            99999999999999875 5431 110       1    123   667788  9998 65 8 9999987  247888887


Q ss_pred             HHhhhc-c------------cc--C---Ch--------HHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 009517          377 YKVASV-N------------LC--S---NI--------SGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLE  430 (533)
Q Consensus       377 ~~~~~~-~------------~~--~---~~--------~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  430 (533)
                      ...... .            +.  .   ..        ..+.+...             ...+.++...++.+++++++.
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~-------------~~l~~~~~~~~~~~~~~~~l~  280 (418)
T 2c81_A          214 QQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILL-------------DQLQELDDKNAIREKNAMFLN  280 (418)
T ss_dssp             HHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHH-------------HHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCccccccccccccchhhccccccccCcCCCcCHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHH
Confidence            765431 1            11  0   00        01111110             012234556666677788899


Q ss_pred             HHHhcCCCceEe-cCCc-eeEEe----cccCCCHHHHHHHHhcCCCChHHHHHHHHHccceE---EEcCCCCCC------
Q 009517          431 DAFNSLEGITCN-KAEG-AMYLF----PRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIV---LVPGSGFGQ------  495 (533)
Q Consensus       431 ~~L~~~~g~~~~-~~~g-g~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~---v~pg~~f~~------  495 (533)
                      +.|.++||+.+. .+++ +...|    +.++  ..     ...+. +...+...+.+++||.   +.+|.....      
T Consensus       281 ~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~-~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~  352 (418)
T 2c81_A          281 DALSKIDGIKVMKRPPQVSRQTYYGYVFRFD--PV-----KFGGL-NADQFCEILREKLNMGTFYLHPPYLPVHKNPLFC  352 (418)
T ss_dssp             HHHTTSTTEEECCCCTTEEECCCSEEEEEEC--GG-----GTTTC-CHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCC
T ss_pred             HHhccCCCcccCCCCCCCcccccEEEEEEEc--cc-----ccccc-CHHHHHHHHHHcCCCCcccccccccccccCchhc
Confidence            999988898887 4666 33332    3332  10     00011 2344444544433999   988752110      


Q ss_pred             ----CC--------------C---------CceEEEEec--C-CcCcHHHHHHHHHHHHHHHH
Q 009517          496 ----VP--------------G---------TWHFRCTIL--P-QEDKIPAIVTRLTDFHKNFM  528 (533)
Q Consensus       496 ----~~--------------g---------~~~iRis~~--~-~~e~i~~~~~~l~~~l~~~~  528 (533)
                          ..              +         .+.|||++.  . +++++++++++|+++++++.
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~~~  415 (418)
T 2c81_A          353 PWTKNRYLKSVRKTEAYWRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAELARKFC  415 (418)
T ss_dssp             GGGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHTTC
T ss_pred             ccccccccccccccccccccCCChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHhhc
Confidence                00              1         148999995  7 89999999999999887643

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=99.96  E-value=2e-27  Score=250.33  Aligned_cols=330  Identities=12%  Similarity=0.078  Sum_probs=228.4

Q ss_pred             CHHHHHHHHHHHhcCCCC---CccccCCCcccHHHHHHHHHHHHhhcCCCCCC--CCEEEcCChHHHHHHHHHHhccCCC
Q 009517          141 SADSIERAWQILDQIPGR---ATGAYSHSQGIKGLRDTIAAGIEARDGFPADP--NDIFLTDGASPAVHMMMQLLIRSEN  215 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~---~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~--~~i~~t~G~~~al~~~~~~l~~~~g  215 (533)
                      |+.+++++.+.+.+....   ....|....+..++++.+.+++.+.+|.+.+.  .+|++++|+ +++..++.+++ +||
T Consensus        57 ~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs-~an~~~~~all-~pG  134 (483)
T 1rv3_A           57 SRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGS-PANFAVYTALV-EPH  134 (483)
T ss_dssp             CHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHH-HHHHHHHHHHT-CTT
T ss_pred             CHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcH-HHHHHHHHHhc-CCC
Confidence            788999988877652210   01124445556788988889988888855221  248888888 88888888888 899


Q ss_pred             CeEEEcCCcCcchHH--------HHHHhC--CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCcc
Q 009517          216 DGILCPIPQYPLYSA--------SIALHG--GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ  285 (533)
Q Consensus       216 d~Vlv~~p~~~~~~~--------~~~~~g--~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~  285 (533)
                      |+|++++|+|.++..        .+...|  .++++++++++ ++.+|+++|+++++..     ++++|++ +++||+ .
T Consensus       135 D~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~-~~~iD~d~le~~i~~~-----~tklIi~-~~sn~~-~  206 (483)
T 1rv3_A          135 GRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPD-TGYIDYDRLEENARLF-----HPKLIIA-GTSCYS-R  206 (483)
T ss_dssp             CEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTT-TCSBCHHHHHHHHHHH-----CCSEEEE-CCSSCC-S
T ss_pred             CEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccC-CCcCCHHHHHHHHhhc-----CCcEEEE-eCCcCC-C
Confidence            999999999887753        233444  45555555543 6789999999999843     7999998 999998 8


Q ss_pred             CCCHHHHHHHHHHHHHcCCEEEEccccc-cccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEE
Q 009517          286 VLAEENQRAIVDFCKKEGLVLLADEVYQ-ENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYME  364 (533)
Q Consensus       286 ~~s~~~l~~i~~l~~~~~~~lI~De~y~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~  364 (533)
                      +++   +++|+++|+++|+++|+|++|. ++.+.+..+ .++    .     ..|   +++.|++|+|   +|+|.||++
T Consensus       207 ~~d---l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~-~p~----~-----~~d---iv~~s~~K~l---~GprgG~i~  267 (483)
T 1rv3_A          207 NLD---YGRLRKIADENGAYLMADMAHISGLVVAGVVP-SPF----E-----HCH---VVTTTTHKTL---RGCRAGMIF  267 (483)
T ss_dssp             CCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSC-CGG----G-----TCS---EEEEESSGGG---CCCSCEEEE
T ss_pred             cCC---HHHHHHHHHHcCCEEEEEccchhcccccCCCC-CCC----C-----CCc---EEEecCcccC---CCCCceEEE
Confidence            887   8999999999999999999975 444433211 111    1     134   7789999987   388999999


Q ss_pred             EecCCH---------------HHHHHHHHhhh--ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 009517          365 VTGFSA---------------EVREQIYKVAS--VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAK  427 (533)
Q Consensus       365 ~~~~~~---------------~~~~~l~~~~~--~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (533)
                      +   ++               ++...+.....  ...+++.....+...++...         ...+++.+.++++++++
T Consensus       268 ~---~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~---------~~~~~~~~~~~~~~~~~  335 (483)
T 1rv3_A          268 Y---RRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQA---------MTPEFKEYQRQVVANCR  335 (483)
T ss_dssp             E---ECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHH---------TSHHHHHHHHHHHHHHH
T ss_pred             E---cchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHH---------hChhHHHHHHHHHHHHH
Confidence            8   43               24444433221  12334444444444444210         01245677888899999


Q ss_pred             HHHHHHhcCCCceEecCC-ceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEE----cCCCCCCCCCCceE
Q 009517          428 TLEDAFNSLEGITCNKAE-GAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLV----PGSGFGQVPGTWHF  502 (533)
Q Consensus       428 ~l~~~L~~~~g~~~~~~~-gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~----pg~~f~~~~g~~~i  502 (533)
                      ++.+.|.++ |+.++.+. +.++.|+++...          +. +... +.++|++.||.+.    ||..+.  -+.+++
T Consensus       336 ~l~~~L~~~-g~~~~~~~~~~~~~~v~~~~~----------g~-~~~~-~~~~L~~~gI~v~~~~~pg~~~~--~~~~~i  400 (483)
T 1rv3_A          336 ALSAALVEL-GYKIVTGGSDNHLILVDLRSK----------GT-DGGR-AEKVLEACSIACNKNTCPGDKSA--LRPSGL  400 (483)
T ss_dssp             HHHHHHHHT-TCEEGGGSCSSSEEEEEGGGG----------TC-CHHH-HHHHHHHTTEECEEECCSSCSCT--TSCCEE
T ss_pred             HHHHHHHhc-CCEeccCCCCCceEEEeccCC----------CC-CHHH-HHHHHHhCCcEEecCCCCCCCcC--CCCceE
Confidence            999999998 99887763 346777666421          12 1233 3467788999999    987422  123489


Q ss_pred             EEEec--CC----cCcHHHHHHHHHHHHHH
Q 009517          503 RCTIL--PQ----EDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       503 Ris~~--~~----~e~i~~~~~~l~~~l~~  526 (533)
                      ||++.  .+    ++++++++++|+++++.
T Consensus       401 Ris~~~~~t~g~~~edi~~~~~~l~~~l~~  430 (483)
T 1rv3_A          401 RLGTPALTSRGLLEKDFQKVAHFIHRGIEL  430 (483)
T ss_dssp             EEECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EeecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence            99996  35    78999999999999876

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=99.96  E-value=6.9e-28  Score=250.08  Aligned_cols=321  Identities=15%  Similarity=0.146  Sum_probs=211.1

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHH---hccCCCCe
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQL---LIRSENDG  217 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~---l~~~~gd~  217 (533)
                      |+++++++.+++.+.    . .|.   +..++++++++.+.+.++   .+++|++++|+++|+..+++.   +.  ++++
T Consensus        70 ~p~v~~a~~~~~~~~----~-~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~ea~~~al~~ar~~~--~~~~  136 (424)
T 2e7u_A           70 HPKVLARVRETLERG----L-TFG---APSPLEVALAKKVKRAYP---FVDLVRFVNSGTEATMSALRLARGYT--GRPY  136 (424)
T ss_dssp             CHHHHHHHHHHHHTC----S-CCS---SCCHHHHHHHHHHHHHCT---TCCEEEEESSHHHHHHHHHHHHHHHH--CCCE
T ss_pred             CHHHHHHHHHHHHhC----C-CCC---CCCHHHHHHHHHHHHhCC---CCCEEEEeCCHHHHHHHHHHHHHHhh--CCCE
Confidence            789999999998762    1 122   234556666666665543   468999999999999999986   43  4588


Q ss_pred             EEEcCCcCcchHHHHHH--------------hCC------eEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEe
Q 009517          218 ILCPIPQYPLYSASIAL--------------HGG------TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI  277 (533)
Q Consensus       218 Vlv~~p~~~~~~~~~~~--------------~g~------~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~  277 (533)
                      |++.+|+|+++...+..              .|.      .++.++.       .|+++|++.+++.   +.++++|+ +
T Consensus       137 vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~le~~l~~~---~~~~~~vi-~  205 (424)
T 2e7u_A          137 IVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY-------NDPEGLREVLKRR---GEEIAAII-F  205 (424)
T ss_dssp             EEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT-------TCHHHHHHHHHHH---GGGEEEEE-E
T ss_pred             EEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC-------CCHHHHHHHHHhC---CCCEEEEE-E
Confidence            99999999986543221              121      2444442       3899999999753   11455555 5


Q ss_pred             CCCC-CCccC-CCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCC
Q 009517          278 NPGN-PTGQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGE  355 (533)
Q Consensus       278 ~p~N-PtG~~-~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl  355 (533)
                      +|+| +||.+ .+++++++|.++ ++||+++|+||+|++| +.+.  ...+ .. ..+   .+|     +.||||++ | 
T Consensus       206 ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~-~~g~--~~~~-~~-~~~---~~d-----i~s~sK~l-~-  269 (424)
T 2e7u_A          206 EPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGF-RLAF--GGAT-EL-LGL---KPD-----LVTLGKIL-G-  269 (424)
T ss_dssp             CSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTT-TSST--THHH-HH-HTC---CCS-----EEEECGGG-G-
T ss_pred             eCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcccc-ccch--hHHH-HH-hCC---Ccc-----hhhhhhhh-h-
Confidence            5654 49975 479999999999 9999999999999997 4332  1111 11 112   456     34999999 5 


Q ss_pred             CCCeeEEEEEecCCHHHHHHHHHh----hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009517          356 CGKRGGYMEVTGFSAEVREQIYKV----ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLED  431 (533)
Q Consensus       356 ~G~riG~v~~~~~~~~~~~~l~~~----~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  431 (533)
                      +|+|+||+++   ++++++.+...    ...++++++++++++.++|+           ..+..+.+.++++++++++++
T Consensus       270 ~G~~~G~~~~---~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~-----------~~~~~~~~~~~~~~~~~~l~~  335 (424)
T 2e7u_A          270 GGLPAAAYAG---RREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLE-----------LLEENPGYYAYLEDLGARLEA  335 (424)
T ss_dssp             TTSSCEEEEE---CHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHH-----------HHHHCTHHHHHHHHHHHHHHH
T ss_pred             CCcceEEEEE---cHHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHH-----------HHHhccHHHHHHHHHHHHHHH
Confidence            4999999998   89998877652    22567889999999888874           111124466677777778777


Q ss_pred             HHhcC---CCc-eEecCCceeEEecccCC-CHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEe
Q 009517          432 AFNSL---EGI-TCNKAEGAMYLFPRIQL-PEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTI  506 (533)
Q Consensus       432 ~L~~~---~g~-~~~~~~gg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~  506 (533)
                      .|+++   .++ ..+++.|. ++|+.+.. +.....+...........++..+ .++||.+.||..       ..+|+++
T Consensus       336 ~L~~~~~~~~~~~~~~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~-------~~~~~~~  406 (424)
T 2e7u_A          336 GLKEVLKEKGLPHTVNRVGS-MITVFFTEGPVVTFQDARRTDTELFKRFFHGL-LDRGIYWPPSNF-------EAAFLSV  406 (424)
T ss_dssp             HHHHHHHHTTCCCEEEEETT-EEEEESSSSCCCSHHHHTTSCHHHHHHHHHHH-HTTTEECCSSSS-------SCEECCT
T ss_pred             HHHHHHHhCCCceEEEeece-EEEEEEeCCCCcchhhhcccCHHHHHHHHHHH-HHCCeEEeccCC-------CceEeec
Confidence            77664   133 33556655 56765542 10000000000000123444444 478999998642       1478887


Q ss_pred             cCCcCcHHHHHHHHHHHH
Q 009517          507 LPQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       507 ~~~~e~i~~~~~~l~~~l  524 (533)
                      ..+++++++++++|++++
T Consensus       407 ~~t~~~i~~~l~~l~~~l  424 (424)
T 2e7u_A          407 AHREEDVEKTLEALRKAL  424 (424)
T ss_dssp             TCCHHHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHHHHhC
Confidence            799999999999998763

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=99.96  E-value=1.5e-27  Score=244.87  Aligned_cols=321  Identities=15%  Similarity=0.157  Sum_probs=225.6

Q ss_pred             eeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccC-CCcccHHHHHHHH
Q 009517           99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYS-HSQGIKGLRDTIA  177 (533)
Q Consensus        99 ~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~-~~~G~~~lr~aia  177 (533)
                      +++++.|.|..                               ++++.+++.+.+..      ..|. +..+..+||++++
T Consensus        24 ~~~l~~~~p~~-------------------------------~~~~~~a~~~~~~~------~~~~~~~~~~~~l~~~la   66 (391)
T 3dr4_A           24 LPRISVAAPRL-------------------------------DGNERDYVLECMDT------TWISSVGRFIVEFEKAFA   66 (391)
T ss_dssp             ----CCCCCCC-------------------------------CSSHHHHHHHHHHH------TCCSSCSHHHHHHHHHHH
T ss_pred             CceeccCCCCC-------------------------------CHHHHHHHHHHHHc------CCccCCChHHHHHHHHHH
Confidence            88999999875                               67788888887765      2355 6778999999999


Q ss_pred             HHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHh-ccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHH
Q 009517          178 AGIEARDGFPADPNDIFLTDGASPAVHMMMQLL-IRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSE  256 (533)
Q Consensus       178 ~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~  256 (533)
                      ++++        .+++++++||++|+..+++.+ + .+||+|+++.|+|+.+...+...|++++.++++++ ++.+|+++
T Consensus        67 ~~~~--------~~~~i~~~~gt~al~~~l~~~~~-~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~~  136 (391)
T 3dr4_A           67 DYCG--------VKHAIACNNGTTALHLALVAMGI-GPGDEVIVPSLTYIASANSVTYCGATPVLVDNDPR-TFNLDAAK  136 (391)
T ss_dssp             HHHT--------CSEEEEESSHHHHHHHHHHHHTC-CTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTT-TCSBCGGG
T ss_pred             HHhC--------CCcEEEeCCHHHHHHHHHHHcCC-CCcCEEEECCCchHHHHHHHHHCCCEEEEEecCcc-ccCcCHHH
Confidence            9985        237888999999999999999 7 79999999999999999999999999999999754 67899999


Q ss_pred             HHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccc-cccCCCCcccHHHHHhhcCC
Q 009517          257 VKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN-VYVPEKKFHSFKKVSRSMGY  335 (533)
Q Consensus       257 l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~-~~~~~~~~~~~~~~~~~~~~  335 (533)
                      +++++++      ++++|+   |+||||.+.+   +++|+++|+++|+++|+|++|... .+.+. +.       ..   
T Consensus       137 l~~~~~~------~~~~v~---~~n~tG~~~~---~~~i~~l~~~~~~~li~D~a~~~g~~~~~~-~~-------~~---  193 (391)
T 3dr4_A          137 LEALITP------RTKAIM---PVHLYGQICD---MDPILEVARRHNLLVIEDAAEAVGATYRGK-KS-------GS---  193 (391)
T ss_dssp             SGGGCCT------TEEEEC---CBCGGGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTE-ET-------TS---
T ss_pred             HHHhcCC------CceEEE---EECCCCChhh---HHHHHHHHHHcCCEEEEECcccccceECCe-ee-------cc---
Confidence            9998875      788887   5789999887   889999999999999999999853 33221 10       00   


Q ss_pred             CCCCceEEEEecCC--ccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhcc---------------ccCChHHHHHHHHHc
Q 009517          336 GEKDISLVSFQSVS--KGYYGECGKRGGYMEVTGFSAEVREQIYKVASVN---------------LCSNISGQILASLVM  398 (533)
Q Consensus       336 ~~~~~~vi~i~S~S--K~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~~---------------~~~~~~~q~a~~~~L  398 (533)
                       ..|   +.+.|||  |++   +|.++||+++  .++++++.+..+....               +..+.+.++++...+
T Consensus       194 -~~d---i~~~S~s~~K~l---~~g~gg~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~  264 (391)
T 3dr4_A          194 -LGD---CATFSFFGNAII---TTGEGGMITT--NDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQL  264 (391)
T ss_dssp             -SSS---EEEEECBTTSSS---CCBSCEEEEE--SCHHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHHHH
T ss_pred             -cCC---EEEEECCCCCcC---CcCCeEEEEE--CCHHHHHHHHHHHhcCCCCCCcccccccccccCCCHHHHHHHHHHH
Confidence             123   6677877  766   3567899887  3566877776654211               223333333322222


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecC------Ccee-EEecccCCCHHHHHHHHhcCCCC
Q 009517          399 SPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKA------EGAM-YLFPRIQLPEKAIKAAEAEKTVP  471 (533)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~------~gg~-~~~~~~~~~~~~~~~~~~~~~~~  471 (533)
                                    +.++++.++.++.++++.+.|.++ |+.+..+      ..++ .+++.++...         +. +
T Consensus       265 --------------~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~i~~~~~~---------~~-~  319 (391)
T 3dr4_A          265 --------------ERVDEHLAARERVVGWYEQKLARL-GNRVTKPHVALTGRHVFWMYTVRLGEGL---------ST-T  319 (391)
T ss_dssp             --------------HTHHHHHHHHHHHHHHHHHHHGGG-TTSEECCCCCTTSCCCCSSEEEEECSSC---------SS-C
T ss_pred             --------------HHHHHHHHHHHHHHHHHHHHhhcC-CccccCcCCCCCCcceeEEEEEEECCcc---------ch-h
Confidence                          334556667777888899999988 8776654      2222 2233332100         11 1


Q ss_pred             hHHHHHHHHHccceEEEcCCCC---CC---C-----------CCCceEEEEec--CCcCcHHHHHHHHHHHH
Q 009517          472 DAFYCRRLLNATGIVLVPGSGF---GQ---V-----------PGTWHFRCTIL--PQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       472 ~~~~~~~ll~~~gV~v~pg~~f---~~---~-----------~g~~~iRis~~--~~~e~i~~~~~~l~~~l  524 (533)
                      ...+. +.|.++||.+.+|...   ..   .           .....+||++.  .++++|++++++|++++
T Consensus       320 ~~~l~-~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l  390 (391)
T 3dr4_A          320 RDQVI-KDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVL  390 (391)
T ss_dssp             HHHHH-HHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred             HHHHH-HHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence            23333 5566789999987521   00   0           01347999985  89999999999988754

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=99.92  E-value=1.1e-30  Score=271.55  Aligned_cols=360  Identities=11%  Similarity=0.029  Sum_probs=237.9

Q ss_pred             cchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHh
Q 009517           74 GEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILD  153 (533)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~  153 (533)
                      +.++.++++...++.||++      +|||..|....                      ..+++    ++++++++.+++.
T Consensus        83 p~~~~~~~G~~l~D~dG~~------yiD~~~~~~~~----------------------~lGh~----~p~V~~Av~~q~~  130 (465)
T 2yky_A           83 PLVIAQGTGSRFQDVDGHA------YVNFLGEYTAG----------------------LFGHS----HPVIRAAVERALA  130 (465)
Confidence            3467888888888888888      77776665321                      11111    5888999988887


Q ss_pred             cCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCC-CCeEEEcCCcCcchHHHH
Q 009517          154 QIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSE-NDGILCPIPQYPLYSASI  232 (533)
Q Consensus       154 ~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~-gd~Vlv~~p~~~~~~~~~  232 (533)
                      +..   ...|+. ....+|.+.+++++.       ..++++++++|++|++.+++.+...+ +++|++.+++|+++...+
T Consensus       131 ~~~---~~~~~~-~~~~~Lae~L~~~~p-------~~~~v~~~nSGseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~  199 (465)
T 2yky_A          131 VGL---NLSTQT-ENEALFAEAVCDRFP-------SIDLVRFTNSGTEANLMALATATAITGRKTVLAFDGGYHGGLLNF  199 (465)
Confidence            621   223433 335677777777652       25789999999999999999864223 489999999999877644


Q ss_pred             H----HhCC--eEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCcc-CCCHHHHHHHHHHHHHcCCE
Q 009517          233 A----LHGG--TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ-VLAEENQRAIVDFCKKEGLV  305 (533)
Q Consensus       233 ~----~~g~--~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~-~~s~~~l~~i~~l~~~~~~~  305 (533)
                      .    ..|.  .++.++.       -|++.|++++++.   +.++++|+++..+|+||. +.+++.+++|+++|++||++
T Consensus       200 ~sg~~~~g~~~~~~~~~~-------~d~~~l~~~l~~~---~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~l  269 (465)
T 2yky_A          200 ASGHAPTNAPYHVVLGVY-------NDVEGTADLLKRH---GHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGAL  269 (465)
Confidence            3    1232  2222322       2789999998742   126888888765666996 55688899999999999999


Q ss_pred             EEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHH-----h-
Q 009517          306 LLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYK-----V-  379 (533)
Q Consensus       306 lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~-----~-  379 (533)
                      +|+||+|+ +.. +.  ...+..+  .+   .+|     +.||||.+ |. |+|+||+++   ++++++.+..     . 
T Consensus       270 lI~DEv~~-~r~-g~--~~a~~~~--gv---~pD-----i~t~sK~l-g~-G~piG~v~~---~~~i~~~l~~~~~g~~~  330 (465)
T 2yky_A          270 LIFDEVMT-SRL-SG--GGAQEML--GI---SAD-----LTTLGKYI-GG-GMSFGAFGG---RRDLMERFDPARDGAFA  330 (465)
Confidence            99999999 743 31  1111111  11   344     56899999 53 999999998   8999998876     2 


Q ss_pred             hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C--Cc-eEecCCceeEEecccC
Q 009517          380 ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL-E--GI-TCNKAEGAMYLFPRIQ  455 (533)
Q Consensus       380 ~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~--g~-~~~~~~gg~~~~~~~~  455 (533)
                      ...+++.++++|+++.++|+...           . +.+.++++++.+++++.|+++ .  ++ ..+++.| .++|+.+.
T Consensus       331 ~~~T~~~npla~aAa~aaL~~l~-----------~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~g~G-~~~~i~~~  397 (465)
T 2yky_A          331 HAGTFNNNILTMSAGHAALTQIY-----------T-RQAASDLSASGDRFRANLNRIAVENQAPLQFTGLG-SLGTIHFS  397 (465)
Confidence            33678899999999988885321           1 345666777777777777665 1  22 2244444 45554443


Q ss_pred             C-CHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHHHHH
Q 009517          456 L-PEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFM  528 (533)
Q Consensus       456 ~-~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~~  528 (533)
                      . +.................++..++ ++||++.|+. |+      .  +++..++++|++++++|+++++++.
T Consensus       398 ~~~~~~~~~~~~~d~~~~~~~~~~ll-~~GV~v~p~~-~~------~--~s~~~t~edid~~l~~l~~~l~~~~  461 (465)
T 2yky_A          398 RAPIRSAGDVRAADQQLKELFFFHML-RKGIYLAPRG-MY------A--LSLEIADAGRDAFAEALADFIGEQR  461 (465)
Confidence            1 100000000000011234454554 6899999865 32      1  6777999999999999999988764

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=99.96  E-value=2.8e-26  Score=237.63  Aligned_cols=329  Identities=12%  Similarity=0.078  Sum_probs=204.9

Q ss_pred             CHHHHHHHHHHHhcCCCCC---ccccCCCcccHHHHHHHH-HHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCC
Q 009517          141 SADSIERAWQILDQIPGRA---TGAYSHSQGIKGLRDTIA-AGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND  216 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~---~~~Y~~~~G~~~lr~aia-~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd  216 (533)
                      |+.+++++.+++.+.....   ...|.... ..++.++++ +.+.+.+|  .+. ..++++||++++..+++.++ ++||
T Consensus        45 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~--~~~-~~v~~~~Gs~a~~~al~~~~-~~gd  119 (425)
T 3ecd_A           45 SRAVLDAQGSVLTNKYAEGYPGKRYYGGCE-FADEVEALAIERVKRLFN--AGH-ANVQPHSGAQANGAVMLALA-KPGD  119 (425)
T ss_dssp             CHHHHHHHTSGGGSSCTTC-------------CCHHHHHHHHHHHHHHT--CSE-EECCCSSHHHHHHHHHHHHC-CTTC
T ss_pred             CHHHHHHHhhhhhcccccCCCcchhcCCCh-HHHHHHHHHHHHHHHHhC--CCC-ceeecCchHHHHHHHHHHcc-CCCC
Confidence            7899999888775321100   01122221 112333333 44544444  222 22458888999999999998 8999


Q ss_pred             eEEEcCCcCcc---hHHHHHHhCC--eEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHH
Q 009517          217 GILCPIPQYPL---YSASIALHGG--TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEEN  291 (533)
Q Consensus       217 ~Vlv~~p~~~~---~~~~~~~~g~--~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~  291 (533)
                      +|+++.|+|+.   +.......|.  +++.++.++ +++++|+++|++++++.     ++++|++++|+||+.  .+   
T Consensus       120 ~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~~~~~--~~---  188 (425)
T 3ecd_A          120 TVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSR-DTMLIDYDQVEALAQQH-----KPSLIIAGFSAYPRK--LD---  188 (425)
T ss_dssp             EEEEECC------------------CEEEEECCCT-TTSSCCHHHHHHHHHHH-----CCSEEEEECSCCCSC--CC---
T ss_pred             EEEEcccccccceecchhhhhcccceeeeecCCCc-ccCccCHHHHHHHHhhc-----CCcEEEEccccCCCc--CC---
Confidence            99999999987   3323224454  555666553 36799999999999854     789999999999753  33   


Q ss_pred             HHHHHHHHHHcCCEEEEcccc-ccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCC-
Q 009517          292 QRAIVDFCKKEGLVLLADEVY-QENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFS-  369 (533)
Q Consensus       292 l~~i~~l~~~~~~~lI~De~y-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~-  369 (533)
                      +++|+++|++||+++|+||+| .++.+.+. . ...   ..     ..|   |++.||||++   +|+|+||+++   + 
T Consensus       189 l~~i~~l~~~~~~~li~De~~~~g~~~~~~-~-~~~---~~-----~~d---i~~~s~sK~l---~g~~~g~~~~---~~  249 (425)
T 3ecd_A          189 FARFRAIADSVGAKLMVDMAHIAGVIAAGR-H-ANP---VE-----HAH---VVTSTTHKTL---RGPRGGFVLT---ND  249 (425)
T ss_dssp             HHHHHHHHHHHTCEEEEECGGGHHHHHTTS-S-CCG---GG-----TCS---EEEEESSGGG---CCCSCEEEEE---SC
T ss_pred             HHHHHHHHHHcCCEEEEECcChHhhhhccc-c-cCc---hh-----cCc---EEEecCCccc---CCCCcEEEEe---CC
Confidence            789999999999999999995 55445432 1 111   11     123   7799999987   3789999998   5 


Q ss_pred             HHHHHHHHHhhhc--cccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecC-Cc
Q 009517          370 AEVREQIYKVASV--NLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKA-EG  446 (533)
Q Consensus       370 ~~~~~~l~~~~~~--~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~-~g  446 (533)
                      +++.+.+......  ..+++...+.++..++..         ...++++.+.++++++++++.+.|.+. |+.+..+ .+
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~---------~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~  319 (425)
T 3ecd_A          250 EEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGE---------ALTDDFKTYIDRVLANAQALGDVLKAG-GVDLVTGGTD  319 (425)
T ss_dssp             HHHHHHHHHHHC-----CCCHHHHHHHHHHHHH---------HTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCS
T ss_pred             HHHHHHHHhhhCccccCCccHHHHHHHHHHHHH---------HHHHhHHHHHHHHHHHHHHHHHHHHhC-CCeeccCCCC
Confidence            6777777665432  223344343333333210         011345677788889999999999986 8888764 45


Q ss_pred             eeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEE----cCCCCCCCCCCceEEEEec------CCcCcHHHH
Q 009517          447 AMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLV----PGSGFGQVPGTWHFRCTIL------PQEDKIPAI  516 (533)
Q Consensus       447 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~----pg~~f~~~~g~~~iRis~~------~~~e~i~~~  516 (533)
                      ++++|+.+..+            ..+...+.+.|+++||.+.    ||..+. ....+.+|+++.      .++++++++
T Consensus       320 ~~~~~~~~~~~------------~~~~~~~~~~l~~~gi~v~~~~~p~~~~~-~~~~~~iRi~~~~~~~~~~~~e~i~~~  386 (425)
T 3ecd_A          320 NHLLLVDLRPK------------GLKGAQVEQALERAGITCNKNGIPFDPEK-PTITSGIRLGTPAGTTRGFGAAEFREV  386 (425)
T ss_dssp             SSEEEEECGGG------------TCCHHHHHHHHHHTTEECEECCCTTCSSC-TTTCSEEEEESHHHHHTTCCHHHHHHH
T ss_pred             ceEEEEEeCCC------------CCCHHHHHHHHHHcCCEecccccCCCCCC-CCCccceeccchhheeccCCHHHHHHH
Confidence            66777654311            0122334566788999999    443322 122348999963      347899999


Q ss_pred             HHHHHHHHHHH
Q 009517          517 VTRLTDFHKNF  527 (533)
Q Consensus       517 ~~~l~~~l~~~  527 (533)
                      +++|++++++.
T Consensus       387 ~~~l~~~l~~~  397 (425)
T 3ecd_A          387 GRLILEVFEAL  397 (425)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcc
Confidence            99999988775

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=99.95  E-value=2.7e-27  Score=249.01  Aligned_cols=324  Identities=16%  Similarity=0.140  Sum_probs=231.5

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCC---CcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhc---cCC
Q 009517          141 SADSIERAWQILDQIPGRATGAYSH---SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI---RSE  214 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~---~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~---~~~  214 (533)
                      .+.+++++.+.+.     ..+.|.+   ..|..++++++++++.+.+|.+.   .+++++|+++++..++.++.   .++
T Consensus        79 ~p~v~~~~~~~~~-----~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~---~~~~~~ggt~a~~~al~~~~~~~~~~  150 (474)
T 1wyu_B           79 NPKLHEEAARLFA-----DLHPYQDPRTAQGALRLMWELGEYLKALTGMDA---ITLEPAAGAHGELTGILIIRAYHEDR  150 (474)
T ss_dssp             CCHHHHHHHHTTS-----SCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSE---EECCCSSHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHH-----hcCCCCchhhChHHHHHHHHHHHHHHHHHCCCc---eeecChHHHHHHHHHHHHHHHHHHhc
Confidence            3566777665522     1344554   67888999999999998888542   36788999999998666542   147


Q ss_pred             CC-----eEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCH
Q 009517          215 ND-----GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAE  289 (533)
Q Consensus       215 gd-----~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~  289 (533)
                      ||     +|+++.|+|+.+...+...|++++.+++++  ++.+|+++|++++++      ++++|++++| ||||.+.  
T Consensus       151 Gd~~~r~~Vlv~~~~h~~~~~~~~~~G~~vv~v~~~~--~~~~d~~~L~~~i~~------~t~~v~~~~p-n~~G~~~--  219 (474)
T 1wyu_B          151 GEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGP--EGEVDLEALKRELGP------HVAALMLTNP-NTLGLFE--  219 (474)
T ss_dssp             TCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBCT--TSSBCHHHHHHHCST------TEEEEEECSS-CTTSCCC--
T ss_pred             CCccCCCEEEEeCCcChhhHHHHHHCCCEEEEecCCC--CCCcCHHHHHHhhCC------CceEEEEECC-CCCcccC--
Confidence            77     999999999999999999999999999864  568999999999976      7999999998 6899883  


Q ss_pred             HHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCC-C---CeeEEEEE
Q 009517          290 ENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGEC-G---KRGGYMEV  365 (533)
Q Consensus       290 ~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~-G---~riG~v~~  365 (533)
                      +.+++|+++|++||+++|+||+|..+.+ +.   .+...    +   ..|   +++.|++|+| ++| |   .|+||+++
T Consensus       220 ~~l~~i~~l~~~~g~~li~Dea~~~~~~-g~---~~~~~----~---g~d---i~~~s~~K~~-~~p~g~gG~~~G~~~~  284 (474)
T 1wyu_B          220 RRILEISRLCKEAGVQLYYDGANLNAIM-GW---ARPGD----M---GFD---VVHLNLHKTF-TVPHGGGGPGSGPVGV  284 (474)
T ss_dssp             TTHHHHHHHHHHHTCEEEEEGGGGGGTT-TT---CCHHH----H---TCS---EEECCTTTTT-CCCCTTSCCCCCCEEE
T ss_pred             CCHHHHHHHHHHcCCEEEEeCchhhhhc-cC---CCccc----C---CCc---EEEEeCcccc-ccCCCCCCCCeEEEEE
Confidence            3499999999999999999999987654 21   12222    2   234   7788999998 555 5   59999998


Q ss_pred             ecCCHHHHHHHHH-hh------------------h-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 009517          366 TGFSAEVREQIYK-VA------------------S-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR  425 (533)
Q Consensus       366 ~~~~~~~~~~l~~-~~------------------~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (533)
                         ++++++.+.. ..                  . ..++++.+++.++..++..         .-.+.++++.+++.++
T Consensus       285 ---~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~---------~g~~~l~~~~~~~~~~  352 (474)
T 1wyu_B          285 ---KAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRT---------LGLEGLKKAAALAVLN  352 (474)
T ss_dssp             ---CGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHH
T ss_pred             ---cHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHH
Confidence               7777765541 10                  0 1234566777766666521         0124466778889999


Q ss_pred             HHHHHHHHhcCCCceEecCCceeE-EecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEE
Q 009517          426 AKTLEDAFNSLEGITCNKAEGAMY-LFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRC  504 (533)
Q Consensus       426 ~~~l~~~L~~~~g~~~~~~~gg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRi  504 (533)
                      ++++.+.|+++ |+.+..+...+. +|+++  +.+          .+...++..++ ++||.+ |+..|+ ....+++||
T Consensus       353 ~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~--~~~----------~~~~~l~~~L~-~~Gi~~-~~~~~~-~~~~~~lRi  416 (474)
T 1wyu_B          353 ARYLKELLKEK-GYRVPYDGPSMHEFVAQP--PEG----------FRALDLAKGLL-ELGFHP-PTVYFP-LIVKEALMV  416 (474)
T ss_dssp             HHHHHHHHHHT-TCBCSSCSSCCSCEEEBC--STT----------CCHHHHHHHHH-HTTCCC-CEESCS-TTSTTCEEE
T ss_pred             HHHHHHHHhhc-CcEecCCCCcceEEEEEc--CCC----------CCHHHHHHHHH-HCCccc-cccccc-cccCCEEEE
Confidence            99999999988 887643333331 44444  111          12344555554 569985 666664 222448999


Q ss_pred             Eec--CCcCcHHHHHHHHHHHHHH
Q 009517          505 TIL--PQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       505 s~~--~~~e~i~~~~~~l~~~l~~  526 (533)
                      ++.  .+++++++++++|++++++
T Consensus       417 s~~~~~t~e~id~~~~~L~~~~~~  440 (474)
T 1wyu_B          417 EPTETEAKETLEAFAEAMGALLKK  440 (474)
T ss_dssp             CCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred             EeecCCCHHHHHHHHHHHHHHHHh
Confidence            997  4888999999999988753

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.95  E-value=1.7e-26  Score=236.48  Aligned_cols=286  Identities=13%  Similarity=0.142  Sum_probs=206.5

Q ss_pred             CCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHH----HHHhCCeEE
Q 009517          165 HSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS----IALHGGTLV  240 (533)
Q Consensus       165 ~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~----~~~~g~~~~  240 (533)
                      +..+..+|+++++++++      .+ +.|++++| ++|+..+++.+. ++||+|+++.|+|++....    ++..|.+++
T Consensus        50 ~~~~~~~l~~~la~~~~------~~-~~i~~~sG-t~a~~~~~~~~~-~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~  120 (386)
T 1cs1_A           50 GNPTRDVVQRALAELEG------GA-GAVLTNTG-MSAIHLVTTVFL-KPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVL  120 (386)
T ss_dssp             CCHHHHHHHHHHHHHHT------CS-EEEEESSH-HHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHHHHHTTTSCEEE
T ss_pred             CCccHHHHHHHHHHHhC------CC-cEEEeCCH-HHHHHHHHHHHh-CCCCEEEEecCCcHhHHHHHHHHHHhcCCEEE
Confidence            34567899999999985      22 56666555 899999999987 7999999999999974443    356788988


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCC
Q 009517          241 PYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPE  320 (533)
Q Consensus       241 ~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~  320 (533)
                      .++.+       |++.+++++++      ++++|++++|+||||.+++   +++|+++|+++|+++|+||+|..+.+.. 
T Consensus       121 ~~~~~-------d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~-  183 (386)
T 1cs1_A          121 FVDQG-------DEQALRAALAE------KPKLVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPALQN-  183 (386)
T ss_dssp             EECTT-------CHHHHHHHHHT------CCSEEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC-
T ss_pred             EeCCC-------CHHHHHHhhcc------CCcEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence            88753       79999999976      7899999999999999997   8999999999999999999999865421 


Q ss_pred             CCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCee-EEEEEecCCH-HHHHHHHHhhh-ccccCChHHHHHHHHH
Q 009517          321 KKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRG-GYMEVTGFSA-EVREQIYKVAS-VNLCSNISGQILASLV  397 (533)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~ri-G~v~~~~~~~-~~~~~l~~~~~-~~~~~~~~~q~a~~~~  397 (533)
                          ++     .+   ..+   +++.|+||.+ +.+|.|+ ||+++   ++ ++++.+..... .+.+.+++.++++...
T Consensus       184 ----~~-----~~---~~d---i~~~s~sK~~-~~~~~~~~G~~~~---~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  244 (386)
T 1cs1_A          184 ----PL-----AL---GAD---LVLHSCTKYL-NGHSDVVAGVVIA---KDPDVVTELAWWANNIGVTGGAFDSYLLLRG  244 (386)
T ss_dssp             ----GG-----GG---TCS---EEEEETTTTT-TCSSCCCCEEEEE---SSHHHHHHHHHHHHHHTCBCCHHHHHHHHHH
T ss_pred             ----cc-----cc---Cce---EEEEcCcccc-cCCCCceeEEEEe---CcHHHHHHHHHHHHhcCCCCCHHHHHHHHhc
Confidence                11     11   234   7899999998 6688887 99988   64 88888877654 3456788888777666


Q ss_pred             cCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEe------------------cCCceeEEecccCCCHH
Q 009517          398 MSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCN------------------KAEGAMYLFPRIQLPEK  459 (533)
Q Consensus       398 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~------------------~~~gg~~~~~~~~~~~~  459 (533)
                      ++.              +....+.+.++++.+.+.|++++.+..+                  ...++++.| .+..   
T Consensus       245 l~~--------------~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~---  306 (386)
T 1cs1_A          245 LRT--------------LVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSF-ELDG---  306 (386)
T ss_dssp             HTT--------------HHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEE-EESS---
T ss_pred             ccH--------------HHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEE-EECC---
Confidence            531              2334455666777777887776444322                  123666554 2331   


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCC----------------CC--------CCCceEEEEecCCcCcHHH
Q 009517          460 AIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFG----------------QV--------PGTWHFRCTILPQEDKIPA  515 (533)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~----------------~~--------~g~~~iRis~~~~~e~i~~  515 (533)
                                 ..+ .+...|.++||.+.+++ ||                ..        ...+++|||++.  ++.++
T Consensus       307 -----------~~~-~~~~~l~~~gi~~~~~~-~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~--~~~~~  371 (386)
T 1cs1_A          307 -----------DEQ-TLRRFLGGLSLFTLAES-LGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGI--EDGED  371 (386)
T ss_dssp             -----------CHH-HHHHHHHTCSSSEEBSC-CCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCS--SCHHH
T ss_pred             -----------CHH-HHHHHHHhCCcceEccc-CCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEcc--CCHHH
Confidence                       112 24466778999887421 22                00        113599999986  56788


Q ss_pred             HHHHHHHHHHHHH
Q 009517          516 IVTRLTDFHKNFM  528 (533)
Q Consensus       516 ~~~~l~~~l~~~~  528 (533)
                      .+++|.++++++.
T Consensus       372 ~i~~l~~al~~~~  384 (386)
T 1cs1_A          372 LIADLENGFRAAN  384 (386)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhh
Confidence            8888888887653

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=99.95  E-value=2e-26  Score=237.57  Aligned_cols=283  Identities=13%  Similarity=0.119  Sum_probs=202.7

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHH----hCCeEEEEec
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL----HGGTLVPYYL  244 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~----~g~~~~~v~~  244 (533)
                      ..+|++.++++.    |    .+++++++||++|+..+++.++ ++||+|+++.|+|+++...+..    .|.+++.++.
T Consensus        83 ~~~l~~~la~~~----g----~~~~~~~~sG~~Ai~~al~~l~-~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~  153 (414)
T 3ndn_A           83 VSVFEERLRLIE----G----APAAFATASGMAAVFTSLGALL-GAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDG  153 (414)
T ss_dssp             HHHHHHHHHHHH----T----CSEEEEESSHHHHHHHHHHTTC-CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT
T ss_pred             HHHHHHHHHHHH----C----CCcEEEECCHHHHHHHHHHHHh-CCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCC
Confidence            445555555554    4    3678999999999999999998 8999999999999998777644    8999999986


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcc
Q 009517          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (533)
Q Consensus       245 ~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~  324 (533)
                      +       |+++|++++++      ++++|++++|+||||.+.+   +++|+++|+++|+++|+||+|....+..  +  
T Consensus       154 ~-------d~~~l~~ai~~------~t~~v~le~p~NptG~~~~---l~~i~~la~~~g~~livDe~~~~~~~~~--~--  213 (414)
T 3ndn_A          154 D-------DLSQWERALSV------PTQAVFFETPSNPMQSLVD---IAAVTELAHAAGAKVVLDNVFATPLLQQ--G--  213 (414)
T ss_dssp             T-------CHHHHHHHTSS------CCSEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHCC--C--
T ss_pred             C-------CHHHHHHhcCC------CCeEEEEECCCCCCCcccc---HHHHHHHHHHcCCEEEEECCCcccccCC--c--
Confidence            4       79999999976      7999999999999999988   8899999999999999999998533211  1  


Q ss_pred             cHHHHHhhcCCCCCCceEEEEecCCccCCCCCC-CeeEEEEEecCCHHHHH-HHHHhhh-ccccCChHHHHHHHHHcCCC
Q 009517          325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFSAEVRE-QIYKVAS-VNLCSNISGQILASLVMSPP  401 (533)
Q Consensus       325 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G-~riG~v~~~~~~~~~~~-~l~~~~~-~~~~~~~~~q~a~~~~L~~~  401 (533)
                       +     ..   ..+   +++.|+||.+ |.+| +++||+++   +++.+. .+..... ...+.++..++++...++  
T Consensus       214 -~-----~~---g~d---iv~~S~sK~l-~~~G~~~~G~vv~---~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l~--  275 (414)
T 3ndn_A          214 -F-----PL---GVD---VVVYSGTKHI-DGQGRVLGGAILG---DREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLE--  275 (414)
T ss_dssp             -G-----GG---TCS---EEEEETTTTT-TCSSCCCCEEEEE---CHHHHTTHHHHHHHHHCCCCCHHHHHHHHHHGG--
T ss_pred             -h-----hc---CCC---eEeccCCccc-cCCCCceEEEEEE---CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--
Confidence             0     11   123   7799999999 6678 89999998   777765 5654433 334456666655555442  


Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEe-cCC----------------ceeEEecccCCC----HHH
Q 009517          402 KVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCN-KAE----------------GAMYLFPRIQLP----EKA  460 (533)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~----------------gg~~~~~~~~~~----~~~  460 (533)
                                  .+....++..++++.+.+.|++.|++..+ .|.                .|.++++.++..    .. 
T Consensus       276 ------------~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~-  342 (414)
T 3ndn_A          276 ------------TLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQ-  342 (414)
T ss_dssp             ------------GHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHH-
T ss_pred             ------------HHHHHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHH-
Confidence                        23444556677788899999888776533 221                344566555421    10 


Q ss_pred             HHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCC--------------------CCCCceEEEEecCCcCcHHHHHHHH
Q 009517          461 IKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ--------------------VPGTWHFRCTILPQEDKIPAIVTRL  520 (533)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~--------------------~~g~~~iRis~~~~~e~i~~~~~~l  520 (533)
                                ....+ ...|+..++.+.+|..+..                    .-..++||||++.  |+++.+++.|
T Consensus       343 ----------~~~~~-~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~--e~~~dli~dl  409 (414)
T 3ndn_A          343 ----------RAFEV-LDKMRLIDISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGL--EDTDDLIADI  409 (414)
T ss_dssp             ----------HHHHH-HHHCSSSEECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCS--SCHHHHHHHH
T ss_pred             ----------HHHHH-HHhCccceEcCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCc--CCHHHHHHHH
Confidence                      11223 3445567888888876531                    1124589999985  5678888888


Q ss_pred             HHHH
Q 009517          521 TDFH  524 (533)
Q Consensus       521 ~~~l  524 (533)
                      ++++
T Consensus       410 ~~al  413 (414)
T 3ndn_A          410 DRAL  413 (414)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            8876

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=99.95  E-value=1.3e-26  Score=236.07  Aligned_cols=314  Identities=12%  Similarity=0.100  Sum_probs=224.1

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHh---ccCCCCe
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL---IRSENDG  217 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l---~~~~gd~  217 (533)
                      |+++++++.+.+...      .|.+..+..+++++++++++      .  +++++|+|+++|+..+++++   . ++||+
T Consensus        12 ~~~v~~a~~~~~~~~------~~~~~~~~~~l~~~la~~~~------~--~~v~~~~ggt~al~~~~~~~~~~~-~~gd~   76 (375)
T 2fnu_A           12 DKEDKKAVLEVLNSK------QLTQGKRSLLFEEALCEFLG------V--KHALVFNSATSALLTLYRNFSEFS-ADRNE   76 (375)
T ss_dssp             CHHHHHHHHHHHTSS------CCSSSHHHHHHHHHHHHHHT------C--SEEEEESCHHHHHHHHHHHSSCCC-TTSCE
T ss_pred             CHHHHHHHHHHHHcC------cccCChHHHHHHHHHHHHhC------C--CeEEEeCCHHHHHHHHHHHhcccC-CCCCE
Confidence            789999998888651      23445568899999999985      2  38999999999999999999   6 79999


Q ss_pred             EEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHH
Q 009517          218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD  297 (533)
Q Consensus       218 Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~  297 (533)
                      |+++.|+|+.+...+...|++++.++++++ + .+|+++|++++++      ++++|++++|   ||.+.+   +++|.+
T Consensus        77 Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~-~~d~~~l~~~i~~------~~~~v~~~~~---tG~~~~---l~~i~~  142 (375)
T 2fnu_A           77 IITTPISFVATANMLLESGYTPVFAGIKND-G-NIDELALEKLINE------RTKAIVSVDY---AGKSVE---VESVQK  142 (375)
T ss_dssp             EEECSSSCTHHHHHHHHTTCEEEECCBCTT-S-SBCGGGSGGGCCT------TEEEEEEECG---GGCCCC---HHHHHH
T ss_pred             EEECCCccHhHHHHHHHCCCEEEEeccCCC-C-CCCHHHHHhhcCc------CceEEEEeCC---cCCccC---HHHHHH
Confidence            999999999999999999999999998764 2 7899999998865      7899888877   999988   899999


Q ss_pred             HHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCC--ccCCCCCCCeeEEEEEecCCHHHHHH
Q 009517          298 FCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVS--KGYYGECGKRGGYMEVTGFSAEVREQ  375 (533)
Q Consensus       298 l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~S--K~~~gl~G~riG~v~~~~~~~~~~~~  375 (533)
                      +|++||+++|+||+|..+.....   ..   + ..    .++   +.+.|||  |.+ |+ |  +|++++. .++++++.
T Consensus       143 l~~~~~~~li~D~a~~~~~~~~~---~~---~-~~----~~~---i~~~s~s~~K~~-~~-g--~g~~~~~-~~~~~~~~  203 (375)
T 2fnu_A          143 LCKKHSLSFLSDSSHALGSEYQN---KK---V-GG----FAL---ASVFSFHAIKPI-TT-A--EGGAVVT-NDSELHEK  203 (375)
T ss_dssp             HHHHHTCEEEEECTTCTTCEETT---EE---T-TS----SSS---EEEEECCTTSSS-CC-S--SCEEEEE-SCHHHHHH
T ss_pred             HHHHcCCEEEEECccccCCeECC---ee---c-cc----cCC---eEEEeCCCCCCc-cc-c--CceEEEe-CCHHHHHH
Confidence            99999999999999986433211   00   1 01    123   6788898  988 64 6  6777762 13778888


Q ss_pred             HHHhhh-cc----------------ccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 009517          376 IYKVAS-VN----------------LCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEG  438 (533)
Q Consensus       376 l~~~~~-~~----------------~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  438 (533)
                      +..... ..                +..+.+...++...+              +.++.+.++++++++++.+.|++++|
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~--------------~~~~~~~~~~~~~~~~l~~~L~~~~~  269 (375)
T 2fnu_A          204 MKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQL--------------KKAPFLMQKREEAALTYDRIFKDNPY  269 (375)
T ss_dssp             HHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHH--------------TTHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred             HHHHHhcCCccccccccccccccccCCCCHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            876542 11                123333333332222              22455677788889999999999888


Q ss_pred             ceEecC----Cce-eEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCC-------CC-------CC---
Q 009517          439 ITCNKA----EGA-MYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSG-------FG-------QV---  496 (533)
Q Consensus       439 ~~~~~~----~gg-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~-------f~-------~~---  496 (533)
                      +.+..+    .++ +++|+.++.. +         ..+...+. +.|.++||.+..+..       |+       .+   
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~l~-~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~  338 (375)
T 2fnu_A          270 FTPLHPLLKDKSSNHLYPILMHQK-F---------FTCKKLIL-ESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAE  338 (375)
T ss_dssp             EEESGGGCSSCCCCSCEEEEECGG-G---------GGGHHHHH-HHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHH
T ss_pred             ccccCCCCCCCcceEEEEEEeCcc-c---------cchHHHHH-HHHHHCCCCccccccccccchhhhcCCCccCChHHH
Confidence            887765    233 3345444311 0         00123344 445678999984221       11       00   


Q ss_pred             -CCCceEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 009517          497 -PGTWHFRCTIL--PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       497 -~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~~  527 (533)
                       ...++|||++.  .+++++++++++|+++++++
T Consensus       339 ~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~  372 (375)
T 2fnu_A          339 DFYHAEISLPCHANLNLESVQNIAHSVLKTFESF  372 (375)
T ss_dssp             HHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Confidence             01248999997  68899999999999988764

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=99.95  E-value=7.3e-27  Score=241.50  Aligned_cols=311  Identities=12%  Similarity=0.067  Sum_probs=212.9

Q ss_pred             CHHHHHHHHHHHhcCCCCCcc--ccCC--CcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhc-c---
Q 009517          141 SADSIERAWQILDQIPGRATG--AYSH--SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI-R---  212 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~--~Y~~--~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-~---  212 (533)
                      |+.+++++.+++....+....  .|..  .....++++++++++    |  .++++|++|+|+++++..+++.++ .   
T Consensus        41 ~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g--~~~~~v~~~~g~t~al~~al~~~~~~~~~  114 (416)
T 1qz9_A           41 PVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLI----G--ARDGEVVVTDTTSINLFKVLSAALRVQAT  114 (416)
T ss_dssp             BTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTT----T--CCTTSEEECSCHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHc----C--CCcccEEEeCChhHHHHHHHHhhcccccc
Confidence            678889998888752110010  1111  233456666666664    4  457899999999999998888764 1   


Q ss_pred             -CCCCeEE-EcCCcCcchHHHH----HHh--CCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCc
Q 009517          213 -SENDGIL-CPIPQYPLYSASI----ALH--GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTG  284 (533)
Q Consensus       213 -~~gd~Vl-v~~p~~~~~~~~~----~~~--g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG  284 (533)
                       .+||+|+ ++.++|+.+...+    +..  |++++.+++         +++|+++|++      ++++|++++|+||||
T Consensus       115 ~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~---------~~~l~~~i~~------~~~~v~~~~~~nptG  179 (416)
T 1qz9_A          115 RSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS---------PEELPQAIDQ------DTAVVMLTHVNYKTG  179 (416)
T ss_dssp             HSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS---------GGGHHHHCST------TEEEEEEESBCTTTC
T ss_pred             cCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc---------HHHHHHHhCC------CceEEEEeccccCcc
Confidence             4788755 4456777655433    223  999988875         5778888765      799999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCee-EEE
Q 009517          285 QVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRG-GYM  363 (533)
Q Consensus       285 ~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~ri-G~v  363 (533)
                      .+++   +++|+++|++||+++|+||+|..    +..+ .++..    +   ..+   +++.|++|++.  +|.++ ||+
T Consensus       180 ~~~~---l~~i~~l~~~~~~~li~D~a~~~----g~~~-~~~~~----~---~~d---~~~~s~~K~l~--~g~~~~g~l  239 (416)
T 1qz9_A          180 YMHD---MQALTALSHECGALAIWDLAHSA----GAVP-VDLHQ----A---GAD---YAIGCTYKYLN--GGPGSQAFV  239 (416)
T ss_dssp             BBCC---HHHHHHHHHHHTCEEEEECTTTT----TTSC-CCHHH----H---TCS---EEEECSSSTTC--CCTTCCCEE
T ss_pred             cccC---HHHHHHHHHHcCCEEEEEccccc----cCcC-CChhh----c---CCC---EEEecCcccCC--CCCCCeEEE
Confidence            9998   89999999999999999999973    2211 22222    2   234   77899999873  57887 999


Q ss_pred             EEecCCHHHHHHHHHhh-----------------------h-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHH
Q 009517          364 EVTGFSAEVREQIYKVA-----------------------S-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGIL  419 (533)
Q Consensus       364 ~~~~~~~~~~~~l~~~~-----------------------~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~  419 (533)
                      ++   ++++++.+....                       . ..++++..++.++.++|+...         .+.+++++
T Consensus       240 ~~---~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~---------~~~~~~~~  307 (416)
T 1qz9_A          240 WV---SPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFA---------QTDMASLR  307 (416)
T ss_dssp             EE---CTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHT---------TSCHHHHH
T ss_pred             EE---CHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHH---------hcCHHHHH
Confidence            98   777765554321                       1 123456666666666553100         02346678


Q ss_pred             HHHHHHHHHHHHHHhcC-C--CceEecCC----ceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCC
Q 009517          420 SSLARRAKTLEDAFNSL-E--GITCNKAE----GAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSG  492 (533)
Q Consensus       420 ~~~~~~~~~l~~~L~~~-~--g~~~~~~~----gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~  492 (533)
                      ++++++++++.+.|+++ |  |+.+..+.    .+.++|+.++  .             ...+. +.|.++||.+.+   
T Consensus       308 ~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~-------------~~~l~-~~l~~~gi~~~~---  368 (416)
T 1qz9_A          308 RKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHP--E-------------GYAVI-QALIDRGVIGDY---  368 (416)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECT--T-------------HHHHH-HHHHTTTEECEE---
T ss_pred             HHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecC--C-------------HHHHH-HHHHhCCcEecc---
Confidence            88889999999999885 6  88887764    2345665443  1             23334 445678998753   


Q ss_pred             CCCCCCCceEEEEec---CCcCcHHHHHHHHHHHHHHH
Q 009517          493 FGQVPGTWHFRCTIL---PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       493 f~~~~g~~~iRis~~---~~~e~i~~~~~~l~~~l~~~  527 (533)
                          .+.+++||++.   .+++++++++++|++++++.
T Consensus       369 ----~~~~~lRis~~~~~~t~~~i~~~~~~l~~~~~~~  402 (416)
T 1qz9_A          369 ----REPRIMRFGFTPLYTTFTEVWDAVQILGEILDRK  402 (416)
T ss_dssp             ----ETTTEEEEECCTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             ----CCCCeEEEeCcccCCCHHHHHHHHHHHHHHHhcc
Confidence                12348999985   58999999999999998753

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=99.95  E-value=2.6e-27  Score=246.19  Aligned_cols=330  Identities=11%  Similarity=0.047  Sum_probs=198.8

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc-CCCCeEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-SENDGIL  219 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~Vl  219 (533)
                      ++++++++.+++.+..   ...| +.....+|.+.+++++    +   ..++|++++|+++|++.+++.+.. ..+++|+
T Consensus        71 ~p~v~~A~~~~~~~~~---~~~~-~~~~~~~la~~l~~~~----~---~~~~v~~~~sGsea~~~al~~a~~~~~~~~ii  139 (429)
T 4e77_A           71 HPAIRQAVIEAVERGL---SFGA-PTEMEVKMAQLVTDLV----P---TMDMVRMVNSGTEATMSAIRLARGYTGRDKII  139 (429)
T ss_dssp             CHHHHHHHHHHHTTCS---CCSS-CCHHHHHHHHHHHHHS----T---TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEE
T ss_pred             CHHHHHHHHHHHHhCc---ccCC-CCHHHHHHHHHHHhhC----C---CCCEEEEeCcHHHHHHHHHHHHHHhhCCCEEE
Confidence            7899999999987631   1234 3333445555555543    3   368999999999999999996541 2467899


Q ss_pred             EcCCcCcchHHHHHH-hCCeE--EEEecCCCCCC------------CCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCC-C
Q 009517          220 CPIPQYPLYSASIAL-HGGTL--VPYYLDEATGW------------GLETSEVKKQLEAAKAKGITVRALVVINPGNP-T  283 (533)
Q Consensus       220 v~~p~~~~~~~~~~~-~g~~~--~~v~~~~~~~~------------~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NP-t  283 (533)
                      +.+++|+++...+.. .+...  ...+...  ++            ..|+++|++++++.   ++++++|+ ++|+|| +
T Consensus       140 ~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~~~vi-~ep~~~~~  213 (429)
T 4e77_A          140 KFEGCYHGHADCLLVKAGSGALTLGQPNSP--GVPTDFAKHTLTCTYNDLASVRQAFEQY---PQEVACII-VEPVAGNM  213 (429)
T ss_dssp             EETTCCCC------------------CCCT--TSCGGGGTTEEEECTTCHHHHHHHHHHS---TTTEEEEE-ECSSBCTT
T ss_pred             EEcCccCCCChhhhhhcCCcccccCCCCcC--CCCCccCCceeecCCCCHHHHHHHHHhc---CCCEEEEE-ECCccCCC
Confidence            999999987653221 11111  1111110  11            11899999999852   12455555 566544 4


Q ss_pred             cc-CCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEE
Q 009517          284 GQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGY  362 (533)
Q Consensus       284 G~-~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~  362 (533)
                      |. ..+++.+++|.++|++||+++|+||+|.+| +.+.  ......  ..+   .+|     +.||||.+ + +|+|+||
T Consensus       214 g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g~--~~~~~~--~~~---~pd-----i~t~sK~~-~-~G~~~G~  278 (429)
T 4e77_A          214 NCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVAL--AGAQDY--YHV---IPD-----LTCLGKII-G-GGMPVGA  278 (429)
T ss_dssp             SCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTBT--TCHHHH--TTC---CCS-----EEEEEGGG-G-TTSCCEE
T ss_pred             CCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccCc--chHHHh--cCC---CCC-----eeeecccc-c-CCCCeEE
Confidence            44 445667999999999999999999999998 5443  121111  112   456     45999999 5 6999999


Q ss_pred             EEEecCCHHHHHHHHHh----hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh----
Q 009517          363 MEVTGFSAEVREQIYKV----ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFN----  434 (533)
Q Consensus       363 v~~~~~~~~~~~~l~~~----~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~----  434 (533)
                      +++   ++++++.+...    ...+++.++++++++.++|+...            .+.+.++++++++++++.|.    
T Consensus       279 ~~~---~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~------------~~~~~~~~~~~~~~l~~~L~~~~~  343 (429)
T 4e77_A          279 FGG---RREVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEIS------------QVGVYETLTELTDSLATGLRHAAK  343 (429)
T ss_dssp             EEE---CHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHT------------STTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEE---CHHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHH------------hcCHHHHHHHHHHHHHHHHHHHHH
Confidence            998   99998887653    33567899999999888874211            02233334444444444443    


Q ss_pred             cCCCceEecCCceeEEecccCCCH--HHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCc
Q 009517          435 SLEGITCNKAEGAMYLFPRIQLPE--KAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDK  512 (533)
Q Consensus       435 ~~~g~~~~~~~gg~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~  512 (533)
                      +.+....+++.| +++|+.+....  .........+......++.. |.++||.+.|+..       ..+|+++..++++
T Consensus       344 ~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~Gi~v~~~~~-------~~~~~~~~~t~e~  414 (429)
T 4e77_A          344 EENIPLVVNHVG-GMFGLFFTNADTVTCYQDVMNCDVERFKRFFHL-MLEEGVYLAPSAF-------EAGFMSLAHSNED  414 (429)
T ss_dssp             HTTCCCEEEEET-TEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHH-HHHTTEECCSSTT-------SCEECCTTCCHHH
T ss_pred             hCCCceEEEEee-eEEEEEEccCcccccccccccccHHHHHHHHHH-HHHCCeEEeecCC-------CCEEEeccCCHHH
Confidence            333333344444 45565443210  00000000000011344444 4567999998632       1567777799999


Q ss_pred             HHHHHHHHHHHHHH
Q 009517          513 IPAIVTRLTDFHKN  526 (533)
Q Consensus       513 i~~~~~~l~~~l~~  526 (533)
                      +++++++|++++++
T Consensus       415 i~~~l~~l~~~l~~  428 (429)
T 4e77_A          415 IQKTVNAARRCFAK  428 (429)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998753

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=99.95  E-value=1.4e-26  Score=239.41  Aligned_cols=325  Identities=14%  Similarity=0.088  Sum_probs=208.3

Q ss_pred             CHHHHHHHHHHHhcCCC---CCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCe
Q 009517          141 SADSIERAWQILDQIPG---RATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDG  217 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~---~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~  217 (533)
                      |+.+++++.+++.+...   .....|........+.+.+.+++.+.+|  .++++|++++| ++++..+++.++ ++||+
T Consensus        43 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~~v~~~sG-s~a~~~a~~~~~-~~gd~  118 (420)
T 3gbx_A           43 SPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFG--ADYANVQPHSG-SQANFAVYTALL-QPGDT  118 (420)
T ss_dssp             CHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHT--CSEEECCCSSH-HHHHHHHHHHHC-CTTCE
T ss_pred             CHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhC--CCCceeEecCc-HHHHHHHHHHhc-CCCCE
Confidence            78999999888754210   0011233333334455544456655556  45666766666 789999999998 89999


Q ss_pred             EEEcCCcCcchH---HHHHH--hCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHH
Q 009517          218 ILCPIPQYPLYS---ASIAL--HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQ  292 (533)
Q Consensus       218 Vlv~~p~~~~~~---~~~~~--~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l  292 (533)
                      |+++.|+|..+.   .....  .+...+.++.+  .++.+|+++|++++++.     ++++|++++|+||+  ..+   +
T Consensus       119 v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~~~~--~~~---l  186 (420)
T 3gbx_A          119 VLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGID--ESGKIDYDEMAKLAKEH-----KPKMIIGGFSAYSG--VVD---W  186 (420)
T ss_dssp             EEEEEEC------------CHHHHSEEEEEEEC--TTCSCCHHHHHHHHHHH-----CCSEEEECCTTCCS--CCC---H
T ss_pred             EEecchhhcceeccchhhhhcccceeEEeccCC--ccCCcCHHHHHHHHHhc-----CCeEEEEecCccCC--ccC---H
Confidence            999999998743   22222  33455666665  45689999999999874     68999999999975  455   8


Q ss_pred             HHHHHHHHHcCCEEEEccccc-cccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCH-
Q 009517          293 RAIVDFCKKEGLVLLADEVYQ-ENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSA-  370 (533)
Q Consensus       293 ~~i~~l~~~~~~~lI~De~y~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~-  370 (533)
                      ++|+++|++||+++|+||+|. ++.+.+.  ....   ..     ..|   |++.|+||+++   |.+.||+++   ++ 
T Consensus       187 ~~l~~l~~~~~~~li~De~~~~~~~~~~~--~~~~---~~-----~~d---i~~~s~sK~~~---g~~gg~~~~---~~~  247 (420)
T 3gbx_A          187 AKMREIADSIGAYLFVDMAHVAGLIAAGV--YPNP---VP-----HAH---VVTTTTHKTLA---GPRGGLILA---KGG  247 (420)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTHHHHHTTS--SCCS---TT-----TSS---EEEEESSGGGC---SCSCEEEEE---SSC
T ss_pred             HHHHHHHHHcCCEEEEECCcchhceeccc--CCcc---cc-----cCC---EEEeecccCCC---CCCceEEEE---cCC
Confidence            999999999999999999975 3333321  1110   00     133   78999999983   666799998   65 


Q ss_pred             --HHHHHHHHhhh-c-cccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecC-C
Q 009517          371 --EVREQIYKVAS-V-NLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKA-E  445 (533)
Q Consensus       371 --~~~~~l~~~~~-~-~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~-~  445 (533)
                        ++++.+..... . ..+++...+.++..++...         ..+++++++++++++++++.+.|.+. |+.++.+ .
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~---------~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~  317 (420)
T 3gbx_A          248 DEELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEA---------MEPEFKVYQQQVAKNAKAMVEVFLNR-GYKVVSGGT  317 (420)
T ss_dssp             CHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHT---------TSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSC
T ss_pred             cHHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHHH---------HhHhHHHHHHHHHHHHHHHHHHHHhc-CCeeccCCC
Confidence              77777765443 2 2233444444433333110         11345677888899999999999886 8888764 4


Q ss_pred             ceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEc-------CCCCCCCCCCceEEEEec------CCcCc
Q 009517          446 GAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVP-------GSGFGQVPGTWHFRCTIL------PQEDK  512 (533)
Q Consensus       446 gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~p-------g~~f~~~~g~~~iRis~~------~~~e~  512 (533)
                      .+.++|+.+..+          +.  +...+.++|+++||.+.|       |..|+    ...+||++.      .++++
T Consensus       318 ~~~~~~~~~~~~----------~~--~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~----~~~iRi~~~~~~~~~~~~~~  381 (420)
T 3gbx_A          318 ENHLFLLDLVDK----------NL--TGKEADAALGRANITVNKNSVPNDPKSPFV----TSGIRIGSPAVTRRGFKEAE  381 (420)
T ss_dssp             SSSEEEEECGGG----------TC--CHHHHHHHHHHTTEECEEECCTTCSSCTTT----CSEEEEECHHHHHTTCCHHH
T ss_pred             CCeEEEEEcCCC----------CC--CHHHHHHHHHHCCcEeccccCCCCccccCC----CcceEEecchhcccCCCHHH
Confidence            566677554311          01  223345667889999999       33333    225999994      34688


Q ss_pred             HHHHHHHHHHHHHH
Q 009517          513 IPAIVTRLTDFHKN  526 (533)
Q Consensus       513 i~~~~~~l~~~l~~  526 (533)
                      +++++++|++++++
T Consensus       382 i~~~~~~l~~~l~~  395 (420)
T 3gbx_A          382 VKELAGWMCDVLDN  395 (420)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999888754

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=99.95  E-value=2e-27  Score=241.14  Aligned_cols=314  Identities=15%  Similarity=0.132  Sum_probs=216.1

Q ss_pred             CHHHHHHHHHHHhcCCCC--C---ccccCCCcccHHHHHHHHHHHHhhcCCCCCCC-C-EEEcCChHHHHHHHHHHhccC
Q 009517          141 SADSIERAWQILDQIPGR--A---TGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-D-IFLTDGASPAVHMMMQLLIRS  213 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~--~---~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~-~-i~~t~G~~~al~~~~~~l~~~  213 (533)
                      |+.+++++.+.+.+..+.  .   ...|.  .+..++++++++.+.+.+|.  +++ + +++|+|+++++..++..++ +
T Consensus        16 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~la~~~g~--~~~~~~i~~t~g~t~a~~~~~~~l~-~   90 (362)
T 2c0r_A           16 PLEVLERAQAEFVDYQHTGMSIMEMSHRG--AVYEAVHNEAQARLLALLGN--PTGYKVLFIQGGASTQFAMIPMNFL-K   90 (362)
T ss_dssp             CHHHHHHHHHTSSSSTTSSSCGGGSCTTS--HHHHHHHHHHHHHHHHHTTC--CSSEEEEEESSHHHHHHHHHHHHHC-C
T ss_pred             CHHHHHHHHHHHhhhhhcCccccccCCCc--HHHHHHHHHHHHHHHHHhCC--CCCcEEEEECCCchHHHHHHHHhcC-C
Confidence            899999998877542110  0   11121  23456777888888777774  443 5 5778999999999999998 8


Q ss_pred             CCCeEEEcCCcCcch--HHHHHHhCCeEEEEecCCCCCCC--CCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCH
Q 009517          214 ENDGILCPIPQYPLY--SASIALHGGTLVPYYLDEATGWG--LETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAE  289 (533)
Q Consensus       214 ~gd~Vlv~~p~~~~~--~~~~~~~g~~~~~v~~~~~~~~~--ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~  289 (533)
                      +||+|+++++.+..+  ...++..| +++.++++.+.+++  +|.++++  +++      ++++|++++|+||||.+++ 
T Consensus        91 ~gd~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~~------~t~~v~~~~~~n~tG~~~~-  160 (362)
T 2c0r_A           91 EGQTANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQD------NAAYLHLTSNETIEGAQFK-  160 (362)
T ss_dssp             TTCEEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CCT------TEEEEEEESEETTTTEECS-
T ss_pred             CCCeEEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccCCCHHHcc--cCC------CcCEEEEeCCcCccceecc-
Confidence            999999887664442  45677789 99999987322233  4666554  443      7999999999999999754 


Q ss_pred             HHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCC
Q 009517          290 ENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFS  369 (533)
Q Consensus       290 ~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~  369 (533)
                       ++++|      +|+++|+|++|..+..    + .++    .+     -|   +++.|+||++ |++|  +||+++   +
T Consensus       161 -~l~~i------~~~~vivD~a~~~~~~----~-~~~----~~-----~d---~~~~s~~K~~-g~~G--~G~l~~---~  210 (362)
T 2c0r_A          161 -AFPDT------GSVPLIGDMSSDILSR----P-FDL----NQ-----FG---LVYAGAQKNL-GPSG--VTVVIV---R  210 (362)
T ss_dssp             -SCCCC------TTSCEEEECTTTTTSS----C-CCG----GG-----CS---EEEEETTTTT-CCSS--CEEEEE---E
T ss_pred             -ccccc------CCCEEEEEChhhccCC----c-cch----hH-----Cc---EEEEeccccc-cCcC--cEEEEE---c
Confidence             25555      8999999999986321    1 111    11     13   6688999999 7888  899998   7


Q ss_pred             HHHHHHHHHh------------h-hccccCChHHHHHHHHHcCCCCCCChhHHHHHH--HHHHHHHHHHHHHHHHHHHHh
Q 009517          370 AEVREQIYKV------------A-SVNLCSNISGQILASLVMSPPKVGDESYESYCA--ERDGILSSLARRAKTLEDAFN  434 (533)
Q Consensus       370 ~~~~~~l~~~------------~-~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~  434 (533)
                      +++++.+.+.            . ...++++...+.++..+|+.          ..+  .++.++++++++++++.+.|+
T Consensus       211 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~----------~~~~~~~~~~~~~~~~~~~~l~~~L~  280 (362)
T 2c0r_A          211 EDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKW----------IEERGGLEGVQQANRKKASLIYDAID  280 (362)
T ss_dssp             GGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHH----------HHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHH----------HHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence            7776554321            1 13356788888888877731          122  357788899999999999999


Q ss_pred             cCCCc-eEecC---CceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--C
Q 009517          435 SLEGI-TCNKA---EGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--P  508 (533)
Q Consensus       435 ~~~g~-~~~~~---~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~  508 (533)
                      +++++ .+..+   .++.++++.++  .+.          +...++ +.|.++||.+.||..|.   +  +||||++  .
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----------~~~~~~-~~L~~~gi~~~~g~~~~---~--~iRis~~~~~  342 (362)
T 2c0r_A          281 QSGGFYRGCVDVDSRSDMNITFRLA--SEE----------LEKEFV-KASEQEGFVGLKGHRSV---G--GLRASIYNAV  342 (362)
T ss_dssp             TSTTSSEESSCGGGBCSSEEEEECS--CHH----------HHHHHH-HHHHHTTEESCBCCTTT---C--SEEEECCTTS
T ss_pred             HcCCccccCCChHHcCCcEEEEEcC--Ccc----------hHHHHH-HHHHHCCCeeccCCCCC---C--EEEEECCCCC
Confidence            98436 66421   23345564443  211          123444 44677899999887662   2  7999997  5


Q ss_pred             CcCcHHHHHHHHHHHHHHH
Q 009517          509 QEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       509 ~~e~i~~~~~~l~~~l~~~  527 (533)
                      ++++++++++.|+++++++
T Consensus       343 ~~e~i~~l~~~l~~~~~~~  361 (362)
T 2c0r_A          343 PYESCEALVQFMEHFKRSR  361 (362)
T ss_dssp             CHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhc
Confidence            7889999999998877643

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=99.95  E-value=4.1e-26  Score=238.31  Aligned_cols=326  Identities=13%  Similarity=0.043  Sum_probs=218.2

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCC---cccHHHH--HHHH-HHHHhhcCCCCCCCCEEE-cCChHHHHHHHHHHhccC
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHS---QGIKGLR--DTIA-AGIEARDGFPADPNDIFL-TDGASPAVHMMMQLLIRS  213 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~---~G~~~lr--~aia-~~~~~~~g~~~~~~~i~~-t~G~~~al~~~~~~l~~~  213 (533)
                      |+.+++++.+.+.+..   ..+|+..   .|...++  ++++ +++.+.+|.+    .+.+ ++|+++|+..++++++ +
T Consensus        58 ~~~v~~a~~~~~~~~~---~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~----~~~v~~~sGs~a~~~a~~~~~-~  129 (447)
T 3h7f_A           58 PRAVLQAQGSVLTNKY---AEGLPGRRYYGGCEHVDVVENLARDRAKALFGAE----FANVQPHSGAQANAAVLHALM-S  129 (447)
T ss_dssp             CHHHHHHHTSGGGGCC---CCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS----EEECCCSSHHHHHHHHHHHHC-C
T ss_pred             CHHHHHHHHHHhcCCc---cccCCcccccCccHHHHHHHHHHHHHHHHHcCCC----ceEEEeCCHHHHHHHHHHHhc-C
Confidence            7899999888775421   2234332   2444444  5555 6666666632    2444 7788899999999998 8


Q ss_pred             CCCeEEEcCCcCcchH-H----HHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCC
Q 009517          214 ENDGILCPIPQYPLYS-A----SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLA  288 (533)
Q Consensus       214 ~gd~Vlv~~p~~~~~~-~----~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s  288 (533)
                      +||+|++++|+|..+. .    .+...+..+++++++++ ++.+|+++|+++++..     ++++|++++|+||++.   
T Consensus       130 ~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~d~~~l~~~i~~~-----~~~~i~~~~~~~~~~~---  200 (447)
T 3h7f_A          130 PGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPA-THLIDMDAVRATALEF-----RPKVIIAGWSAYPRVL---  200 (447)
T ss_dssp             TTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTT-TCSCCHHHHHHHHHHH-----CCSEEEEECSSCCSCC---
T ss_pred             CCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCcc-cCCcCHHHHHHHHHhc-----CCeEEEEcCCCCCCcc---
Confidence            9999999999997731 1    12224566777777644 5689999999999764     6889999899999987   


Q ss_pred             HHHHHHHHHHHHHcCCEEEEcccc-ccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEec
Q 009517          289 EENQRAIVDFCKKEGLVLLADEVY-QENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTG  367 (533)
Q Consensus       289 ~~~l~~i~~l~~~~~~~lI~De~y-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~  367 (533)
                        ++++|+++|++||+++|+||+| .++.+.+.  ..+..   .     ..|   |++.|+||++ +  |+|+||+++  
T Consensus       201 --~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~--~~~~~---~-----~~d---i~~~s~sK~l-~--G~~gG~i~~--  260 (447)
T 3h7f_A          201 --DFAAFRSIADEVGAKLLVDMAHFAGLVAAGL--HPSPV---P-----HAD---VVSTTVHKTL-G--GGRSGLIVG--  260 (447)
T ss_dssp             --CHHHHHHHHHHHTCEEEEECTTTHHHHHTTS--SCCST---T-----TCS---EEEEESSGGG-C--CCSCEEEEE--
T ss_pred             --CHHHHHHHHHHcCCEEEEECCchhhhhcCCC--CCCCC---C-----CCc---EEEecCCcCC-C--CCCeEEEEE--
Confidence              3899999999999999999996 55555442  11110   1     123   6799999987 4  899999998  


Q ss_pred             CCHHHHHHHHHhhh-cc-ccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCceE
Q 009517          368 FSAEVREQIYKVAS-VN-LCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL----EGITC  441 (533)
Q Consensus       368 ~~~~~~~~l~~~~~-~~-~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~  441 (533)
                       ++++++.+.+... .+ .+++...+.++..++...         ..++++...+++.++++++.+.|.+.    +|+.+
T Consensus       261 -~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~---------~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~  330 (447)
T 3h7f_A          261 -KQQYAKAINSAVFPGQQGGPLMHVIAGKAVALKIA---------ATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSV  330 (447)
T ss_dssp             -CGGGHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHT---------TSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEE
T ss_pred             -CHHHHHHHhhhcCCcccCCccHHHHHHHHHHHHHh---------hCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEE
Confidence             8888888876543 22 233333344443333210         01245667778888888999998875    57887


Q ss_pred             ec-CCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEE----cCCCCCCCCCCceEEEEec------CCc
Q 009517          442 NK-AEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLV----PGSGFGQVPGTWHFRCTIL------PQE  510 (533)
Q Consensus       442 ~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~----pg~~f~~~~g~~~iRis~~------~~~  510 (533)
                      +. +.++.++|+++...          +.  +...+.++|+++||.+.    |+..+. +...+++||++.      .++
T Consensus       331 ~~~~~~~~~~~~~~~~~----------~~--~~~~~~~~l~~~GI~v~~~~i~~~~~~-p~~~~~lRig~~~~~~~~~~~  397 (447)
T 3h7f_A          331 VSGGTDVHLVLVDLRDS----------PL--DGQAAEDLLHEVGITVNRNAVPNDPRP-PMVTSGLRIGTPALATRGFGD  397 (447)
T ss_dssp             GGGSCSSSEEEEECTTS----------SC--CHHHHHHHHHHTTEECBC--------------CEEEEECHHHHHHTCCH
T ss_pred             ecCCCCCCEEEEEcCCC----------CC--CHHHHHHHHHHCCeEEecccCCCCCCC-CCCCCceeccCHHHhhCCCCH
Confidence            65 34566777665421          11  23335577888899998    653222 122337999983      568


Q ss_pred             CcHHHHHHHHHHHHHH
Q 009517          511 DKIPAIVTRLTDFHKN  526 (533)
Q Consensus       511 e~i~~~~~~l~~~l~~  526 (533)
                      +++++++++|++++++
T Consensus       398 eei~~~~~~l~~~l~~  413 (447)
T 3h7f_A          398 TEFTEVADIIATALAT  413 (447)
T ss_dssp             HHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            8999999999988764

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=99.95  E-value=1.9e-26  Score=237.24  Aligned_cols=286  Identities=13%  Similarity=0.118  Sum_probs=198.3

Q ss_pred             CcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHH----HHhCCeEEE
Q 009517          166 SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI----ALHGGTLVP  241 (533)
Q Consensus       166 ~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~----~~~g~~~~~  241 (533)
                      ..+..+|+++++++++.      . +.|++++| ++|+..+++ ++ ++||+|+++.|+|++....+    +..|.+++.
T Consensus        66 ~p~~~~l~~~la~~~g~------~-~~i~~~sG-~~ai~~~~~-l~-~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~  135 (403)
T 3cog_A           66 NPTRNCLEKAVAALDGA------K-YCLAFASG-LAATVTITH-LL-KAGDQIICMDDVYGGTNRYFRQVASEFGLKISF  135 (403)
T ss_dssp             CHHHHHHHHHHHHHHTC------S-EEEEESCH-HHHHHHHHT-TS-CTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEE
T ss_pred             CchHHHHHHHHHHHhCC------C-cEEEECCH-HHHHHHHHH-Hh-CCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEE
Confidence            34578999999999852      2 55666665 599999999 77 79999999999999755443    467999999


Q ss_pred             EecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcC-CEEEEccccccccccCC
Q 009517          242 YYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEG-LVLLADEVYQENVYVPE  320 (533)
Q Consensus       242 v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~-~~lI~De~y~~~~~~~~  320 (533)
                      ++.+       |++++++++++      ++++|++++|+||||.+++   +++|+++|+++| +++|+||+|..+.+.  
T Consensus       136 v~~~-------d~~~l~~~i~~------~t~~v~~~~p~nptG~~~~---l~~i~~la~~~g~~~livD~~~~~~~~~--  197 (403)
T 3cog_A          136 VDCS-------KIKLLEAAITP------ETKLVWIETPTNPTQKVID---IEGCAHIVHKHGDIILVVDNTFMSPYFQ--  197 (403)
T ss_dssp             ECTT-------SHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHTSSSCCEEEEECTTTCTTTC--
T ss_pred             ECCC-------CHHHHHHhcCc------CCeEEEEECCCCCCCeeeC---HHHHHHHHHHcCCCEEEEECCCcccccC--
Confidence            8864       78999999876      7999999999999999998   999999999999 999999999986542  


Q ss_pred             CCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCC-CeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHc
Q 009517          321 KKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVM  398 (533)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G-~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L  398 (533)
                      .+.        ++   ..+   |++.|+||.++ .+| .|+||+++  .++++++.+..... .+.+.+++.+.++...|
T Consensus       198 ~~~--------~~---~~d---iv~~S~sK~~~-g~~~~~~G~v~~--~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~l  260 (403)
T 3cog_A          198 RPL--------AL---GAD---ISMYSATKYMN-GHSDVVMGLVSV--NCESLHNRLRFLQNSLGAVPSPIDCYLCNRGL  260 (403)
T ss_dssp             CTT--------TT---TCS---EEEEETTTTTT-CSSCCCCEEEEE--CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_pred             Ccc--------cc---CCe---EEEEcChhhcc-CCCCCeEEEEEE--CcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhh
Confidence            111        11   233   88999999994 455 58999987  24788888876654 44567888888887777


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH--------------HhcCCCceEecCC----ceeEEecccCCCHHH
Q 009517          399 SPPKVGDESYESYCAERDGILSSLARRAKTLEDA--------------FNSLEGITCNKAE----GAMYLFPRIQLPEKA  460 (533)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------------L~~~~g~~~~~~~----gg~~~~~~~~~~~~~  460 (533)
                      +..              ....++..++...+.+.              |.++|++.+..++    |+++.|. ++..   
T Consensus       261 ~~l--------------~~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~-l~~~---  322 (403)
T 3cog_A          261 KTL--------------HVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFY-IKGT---  322 (403)
T ss_dssp             TTH--------------HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEE-ESSC---
T ss_pred             hHH--------------HHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEE-ecCC---
Confidence            521              11122222333333333              3334555555443    8888773 4311   


Q ss_pred             HHHHHhcCCCChHHHHHHHHHccceEEEc---C----------CCCCC----------CCCCceEEEEecCCcCcHHHHH
Q 009517          461 IKAAEAEKTVPDAFYCRRLLNATGIVLVP---G----------SGFGQ----------VPGTWHFRCTILPQEDKIPAIV  517 (533)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~ll~~~gV~v~p---g----------~~f~~----------~~g~~~iRis~~~~~e~i~~~~  517 (533)
                                 . ..+.+++++.||.+..   |          ..+..          .-..++||||++.  ++.++.+
T Consensus       323 -----------~-~~~~~~l~~~~i~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~--e~~~d~i  388 (403)
T 3cog_A          323 -----------L-QHAEIFLKNLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGL--EDEEDLL  388 (403)
T ss_dssp             -----------H-HHHHHHHHHCSSSEECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCS--SCHHHHH
T ss_pred             -----------H-HHHHHHHHhCCcceEccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC--CCHHHHH
Confidence                       1 1234566777875432   2          21110          0114599999986  4567778


Q ss_pred             HHHHHHHHHHH
Q 009517          518 TRLTDFHKNFM  528 (533)
Q Consensus       518 ~~l~~~l~~~~  528 (533)
                      +.|.+++++..
T Consensus       389 ~~l~~al~~~~  399 (403)
T 3cog_A          389 EDLDQALKAAH  399 (403)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhh
Confidence            88888877654

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.95  E-value=3.9e-27  Score=240.10  Aligned_cols=316  Identities=14%  Similarity=0.125  Sum_probs=218.2

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHh-ccCCCCeEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL-IRSENDGIL  219 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~~gd~Vl  219 (533)
                      ++++++++.+.+..      ..|.+..+..+||++++++++        .+++++++|+++|+..+++.+ . ++||+|+
T Consensus        16 ~~~~~~a~~~~~~~------~~~~~~~~~~~l~~~la~~~~--------~~~~i~~~sgt~al~~~l~~l~~-~~gd~Vi   80 (373)
T 3frk_A           16 EYEIKFKFEEIYKR------NWFILGDEDKKFEQEFADYCN--------VNYCIGCGNGLDALHLILKGYDI-GFGDEVI   80 (373)
T ss_dssp             HHHHHHHHHHHHHH------TCCSSSHHHHHHHHHHHHHHT--------SSEEEEESCHHHHHHHHHHHTTC-CTTCEEE
T ss_pred             CHHHHHHHHHHHHC------CCccCCchHHHHHHHHHHHhC--------CCeEEEeCCHHHHHHHHHHHcCC-CCcCEEE
Confidence            56778888777765      236777789999999999985        248999999999999999999 7 7999999


Q ss_pred             EcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHH
Q 009517          220 CPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC  299 (533)
Q Consensus       220 v~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~  299 (533)
                      ++.|+|+.+...+...|++++.++.+++ ++.+|++++++++++      ++++|+   |+||||.+.+   +++|.++|
T Consensus        81 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~~l~~~l~~------~~~~v~---~~n~~G~~~~---l~~i~~l~  147 (373)
T 3frk_A           81 VPSNTFIATALAVSYTGAKPIFVEPDIR-TYNIDPSLIESAITE------KTKAII---AVHLYGQPAD---MDEIKRIA  147 (373)
T ss_dssp             EETTSCTHHHHHHHHHSCEEEEECEETT-TTEECGGGTGGGCCT------TEEEEE---EECCTTCCCC---HHHHHHHH
T ss_pred             ECCCCcHHHHHHHHHcCCEEEEEecccc-ccCcCHHHHHHhcCC------CCeEEE---EECCCcCccc---HHHHHHHH
Confidence            9999999999999999999999998854 678999999999876      788887   7789999887   88999999


Q ss_pred             HHcCCEEEEcccccccc-ccCCCCcccHHHHHhhcCCCCCCceEEEEecCC--ccCCCCCCCeeEEEEEecCCHHHHHHH
Q 009517          300 KKEGLVLLADEVYQENV-YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVS--KGYYGECGKRGGYMEVTGFSAEVREQI  376 (533)
Q Consensus       300 ~~~~~~lI~De~y~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~S--K~~~gl~G~riG~v~~~~~~~~~~~~l  376 (533)
                      +++|+++|+|++|..+. +++. ...       .    ..|   +++.||+  |.+ +.+| +.|++++  .++++++.+
T Consensus       148 ~~~~~~li~D~a~~~g~~~~~~-~~~-------~----~~d---~~~~S~~~~K~l-~~~g-~gg~~~~--~~~~~~~~~  208 (373)
T 3frk_A          148 KKYNLKLIEDAAQAHGSLYKGM-KVG-------S----LGD---AAGFSFYPAKNL-GSLG-DGGAVVT--NDKDLAEKI  208 (373)
T ss_dssp             HHHTCEEEEECTTCTTCEETTE-ETT-------S----SSS---EEEEECCTTSSS-CCSS-SCEEEEE--SCHHHHHHH
T ss_pred             HHcCCEEEEECCcccCCEECCE-ecc-------c----ccc---EEEEeCcCCCcc-Cccc-eeEEEEe--CCHHHHHHH
Confidence            99999999999998532 3221 100       0    134   6688877  987 4224 4888887  356787777


Q ss_pred             HHhhhc-------------cccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEec
Q 009517          377 YKVASV-------------NLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNK  443 (533)
Q Consensus       377 ~~~~~~-------------~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~  443 (533)
                      ......             .+..+.+.++++...+              +.++...++.++..+++.+.|.+++ +.+..
T Consensus       209 ~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~--------------~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~  273 (373)
T 3frk_A          209 KALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKL--------------KYLDKWNEERRKIAQKYIAGINNPN-VIIPV  273 (373)
T ss_dssp             HHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHH--------------HTHHHHHHHHHHHHHHHHHHCCCTT-EECCC
T ss_pred             HHHHhcCcccCCccccccccCCCCHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhccCc-eEecc
Confidence            665431             1122444444333322              2334556666777788888888874 55432


Q ss_pred             -CCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCC-----------CC---------CCceE
Q 009517          444 -AEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ-----------VP---------GTWHF  502 (533)
Q Consensus       444 -~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~-----------~~---------g~~~i  502 (533)
                       +.+....|..+.+..           .+...+ .+.|.++||.+.++.....           ..         ..+.+
T Consensus       274 ~~~~~~~~~~~~~~~~-----------~~~~~l-~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  341 (373)
T 3frk_A          274 EADYAKHVWYTFVIRS-----------EKRDEL-QKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEIL  341 (373)
T ss_dssp             CCTTEECCCSSEEEEE-----------SSHHHH-HHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEE
T ss_pred             CCCCCceeeEEEEEEe-----------CCHHHH-HHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEE
Confidence             222322222121110           112333 3556678999997652110           00         01479


Q ss_pred             EEEec--CCcCcHHHHHHHHHHHHHHHHHH
Q 009517          503 RCTIL--PQEDKIPAIVTRLTDFHKNFMDK  530 (533)
Q Consensus       503 Ris~~--~~~e~i~~~~~~l~~~l~~~~~~  530 (533)
                      ||++.  .++++|+++++.|+++..+...+
T Consensus       342 rl~~~~~~t~~di~~~~~~l~~~~~~~~~~  371 (373)
T 3frk_A          342 SIPIWYGMKNEEIEYVIDKINAWKLEHHHH  371 (373)
T ss_dssp             EECCCTTCCHHHHHHHHHHHHTCC------
T ss_pred             EccCCCCCCHHHHHHHHHHHHHHhhhhccc
Confidence            99995  89999999999998877665443

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=99.95  E-value=7.6e-26  Score=236.67  Aligned_cols=336  Identities=11%  Similarity=-0.039  Sum_probs=230.1

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCC---CCEEEcCChHHHHHHHHHHhccC----
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADP---NDIFLTDGASPAVHMMMQLLIRS----  213 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~---~~i~~t~G~~~al~~~~~~l~~~----  213 (533)
                      ++.+.+++.+.+..    ....|....|..++++++++++.+.+|.+.+.   ..+++|+|+++|+..++.+++ +    
T Consensus        55 ~~~v~e~~~~a~~~----~~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~-~~~~~  129 (452)
T 2dgk_A           55 DENVHKLMDLSINK----NWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMK-WRWRK  129 (452)
T ss_dssp             CHHHHHHHHHTTTC----BTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHH-HHHHH
T ss_pred             hHHHHHHHHHHhcc----CCCChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHH-HHHHH
Confidence            56777777777654    23456666788899999999999888854322   149999999999999998875 3    


Q ss_pred             ----CC-----CeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCc
Q 009517          214 ----EN-----DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTG  284 (533)
Q Consensus       214 ----~g-----d~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG  284 (533)
                          +|     ++|++++ +|..+...+...|++++.+++++ ++|.+|+++|+++|++      ++++|++++|+||||
T Consensus       130 ~~~~~G~~~~~~~vi~~~-~h~~~~~~~~~~G~~v~~v~~~~-~~~~~d~~~l~~~i~~------~t~~v~~~~~~n~tG  201 (452)
T 2dgk_A          130 RMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRP-GQLFMDPKRMIEACDE------NTIGVVPTFGVTYTG  201 (452)
T ss_dssp             HHHHTTCCCSCCEEEESS-CCHHHHHHHHHTTCEEEECCCBT-TBCSCCHHHHHHHCCT------TEEEEECBBSCTTTC
T ss_pred             HHHhcCCCCCCcEEEECC-CcHHHHHHHHHcCceEEEEecCC-CCCeECHHHHHHHHhh------CCEEEEEEcCCcCCc
Confidence                44     5899999 99999999999999999999875 3679999999999976      799999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHc------CCEEEEccccccccc---cCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCC
Q 009517          285 QVLAEENQRAIVDFCKKE------GLVLLADEVYQENVY---VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGE  355 (533)
Q Consensus       285 ~~~s~~~l~~i~~l~~~~------~~~lI~De~y~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl  355 (533)
                      .+.+   +++|+++|+++      |+++++|++|.++..   .+..+ ..+     .    .++. .++..+++|.  ++
T Consensus       202 ~~~~---l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~-----~----~~~~-d~~~~~~hK~--~~  265 (452)
T 2dgk_A          202 NYEF---PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIV-WDF-----R----LPRV-KSISASGHKF--GL  265 (452)
T ss_dssp             BBCC---HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCC-CST-----T----STTE-EEEEEETTTT--TC
T ss_pred             ccCC---HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccch-hhc-----C----CCCC-cEEEECcccc--cC
Confidence            9987   88999999995      999999999998653   22101 110     0    1232 3456788994  45


Q ss_pred             CCCeeEEEEEecCCHHHH-HHHHHhhh-c-----c----ccC---ChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHH
Q 009517          356 CGKRGGYMEVTGFSAEVR-EQIYKVAS-V-----N----LCS---NISGQILASLVMSPPKVGDESYESYCAERDGILSS  421 (533)
Q Consensus       356 ~G~riG~v~~~~~~~~~~-~~l~~~~~-~-----~----~~~---~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~  421 (533)
                      +|+++||+++  .+++++ +.+..... .     .    .+.   ..+.+.++...+.            .+.++++.++
T Consensus       266 ~~~~~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg------------~~g~~~~~~~  331 (452)
T 2dgk_A          266 APLGCGWVIW--RDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLG------------REGYTKVQNA  331 (452)
T ss_dssp             CCSSCEEEEE--SSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHH------------HHHHHHHHHH
T ss_pred             CCCCeEEEEE--cCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHh------------HHHHHHHHHH
Confidence            7899999998  233332 33211000 0     0    011   2333444433331            2345677888


Q ss_pred             HHHHHHHHHHHHhcCCCceEecC-----CceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCC
Q 009517          422 LARRAKTLEDAFNSLEGITCNKA-----EGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQV  496 (533)
Q Consensus       422 ~~~~~~~l~~~L~~~~g~~~~~~-----~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~  496 (533)
                      +.++++++.+.|++++++.++.+     ..++++| .++....       ... +...+. +.|.++||.+..+......
T Consensus       332 ~~~~a~~l~~~L~~~~~~~~~~~~~~~~~~~~v~f-~~~~~~~-------~~~-~~~~l~-~~L~~~Gi~v~~~~~~~~~  401 (452)
T 2dgk_A          332 SYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCF-KLKDGED-------PGY-TLYDLS-ERLRLRGWQVPAFTLGGEA  401 (452)
T ss_dssp             HHHHHHHHHHHHHTTSSEEEEEECCTTTBSSEEEE-EECTTCC-------CSC-CHHHHH-HHHHHTTCBCCEEECSTTC
T ss_pred             HHHHHHHHHHHHHhCCCeEEecCCCCCCCeEEEEE-EecCccc-------ccC-CHHHHH-HHHHhcCCeeeeeeCCccc
Confidence            89999999999999977888753     4455443 3331000       000 113334 4455679865432111111


Q ss_pred             CCCceEEEEec--CCcCcHHHHHHHHHHHHHHHHH
Q 009517          497 PGTWHFRCTIL--PQEDKIPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       497 ~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~~~~  529 (533)
                      .+..++||+++  .++++++++++.|+++++.+.+
T Consensus       402 ~~~~~lRis~~~~~t~e~id~li~~l~~~~~~~~~  436 (452)
T 2dgk_A          402 TDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSD  436 (452)
T ss_dssp             TTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            23458999996  6788999999999999887754

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=99.95  E-value=5e-25  Score=228.47  Aligned_cols=285  Identities=13%  Similarity=0.095  Sum_probs=201.1

Q ss_pred             ccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHH----HHHhCCeEEEEe
Q 009517          168 GIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS----IALHGGTLVPYY  243 (533)
Q Consensus       168 G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~----~~~~g~~~~~v~  243 (533)
                      ...+|+++++++++      .+ +.|++++| ++|+..+++.++ ++||+|+++.|.|+++...    +...|.+++.++
T Consensus       115 ~~~~l~~~lA~l~g------~~-~~v~~~sG-~~Ai~~al~~l~-~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~  185 (445)
T 1qgn_A          115 TTVVLEEKISALEG------AE-STLLMASG-MCASTVMLLALV-PAGGHIVTTTDCYRKTRIFIETILPKMGITATVID  185 (445)
T ss_dssp             HHHHHHHHHHHHHT------CS-EEEEESCH-HHHHHHHHHHHS-CSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEEC
T ss_pred             HHHHHHHHHHHHhC------CC-cEEEeCCH-HHHHHHHHHHHh-CCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeC
Confidence            35688999988874      22 44555555 599999999888 7999999999999987664    445799999887


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHhcCCCe-eEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCC
Q 009517          244 LDEATGWGLETSEVKKQLEAAKAKGITV-RALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKK  322 (533)
Q Consensus       244 ~~~~~~~~ld~~~l~~~i~~~~~~g~~~-~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~  322 (533)
                      .+       |+++++++|++      ++ ++|++++|+||||.+.+   +++|+++|+++|+++|+|++|....+.  .+
T Consensus       186 ~~-------d~~~l~~ai~~------~tv~lV~le~p~NptG~v~d---l~~I~~la~~~g~~livD~a~~~~~~~--~~  247 (445)
T 1qgn_A          186 PA-------DVGALELALNQ------KKVNLFFTESPTNPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLNQ--KA  247 (445)
T ss_dssp             SS-------CHHHHHHHHHH------SCEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTC--CT
T ss_pred             CC-------CHHHHHHHhcc------CCCCEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccC--Cc
Confidence            53       79999999987      78 99999999999999998   889999999999999999999764321  11


Q ss_pred             cccHHHHHhhcCCCCCCceEEEEecCCccCCCCCC-CeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCC
Q 009517          323 FHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSP  400 (533)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G-~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~  400 (533)
                              .++   ..|   +++.|+||.+ |..| .++||+++   ++++++.+..... .....+++.++++...++ 
T Consensus       248 --------~~~---g~D---iv~~S~sK~~-gg~gd~~~G~l~~---~~~l~~~l~~~~~~~g~~~~~~~a~~~~~~l~-  308 (445)
T 1qgn_A          248 --------LAL---GAD---LVLHSATKFL-GGHNDVLAGCISG---PLKLVSEIRNLHHILGGALNPNAAYLIIRGMK-  308 (445)
T ss_dssp             --------TTT---TCS---EEEECTTTTT-TCSSSCCCEEEEE---CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGG-
T ss_pred             --------ccc---CCE---EEEECCcccc-cccccceEEEEEE---CHHHHHHHHHHHHHhCCCCCHHHHHHHHHhHH-
Confidence                    011   234   7899999998 5344 57999998   8899888876554 333456666665555552 


Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-eEecC-----------------CceeEEecccCCCHHHHH
Q 009517          401 PKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGI-TCNKA-----------------EGAMYLFPRIQLPEKAIK  462 (533)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~-~~~~~-----------------~gg~~~~~~~~~~~~~~~  462 (533)
                                   .+....++..++++.+.+.|++.|++ .+..|                 .|++ +++.++....   
T Consensus       309 -------------~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~i-vsf~l~~~~~---  371 (445)
T 1qgn_A          309 -------------TLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGA-VSFEVDGDLL---  371 (445)
T ss_dssp             -------------GHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSE-EEEEESSCHH---
T ss_pred             -------------HHHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcE-EEEEECCCHH---
Confidence                         22333455566688899999988777 34333                 3444 3434431100   


Q ss_pred             HHHhcCCCChHHHHHHHHHccceEEEcCCCCCC--------------------CCCCceEEEEecCCcCcHHHHHHHHHH
Q 009517          463 AAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ--------------------VPGTWHFRCTILPQEDKIPAIVTRLTD  522 (533)
Q Consensus       463 ~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~--------------------~~g~~~iRis~~~~~e~i~~~~~~l~~  522 (533)
                              ....++ ..|+..++.+..|..+..                    .-..+.||||++  .|+++.+++.|++
T Consensus       372 --------~~~~~l-~~l~~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG--~Edid~li~~L~~  440 (445)
T 1qgn_A          372 --------TTAKFV-DALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG--VEDFDDLKADILQ  440 (445)
T ss_dssp             --------HHHHHH-HHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC--SSCHHHHHHHHHH
T ss_pred             --------HHHHHH-HhCCCceEeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec--cCCHHHHHHHHHH
Confidence                    012222 233334787777765421                    011359999998  4679999999999


Q ss_pred             HHHH
Q 009517          523 FHKN  526 (533)
Q Consensus       523 ~l~~  526 (533)
                      +++.
T Consensus       441 al~~  444 (445)
T 1qgn_A          441 ALDS  444 (445)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            8864

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=99.95  E-value=6.6e-27  Score=234.32  Aligned_cols=183  Identities=15%  Similarity=0.134  Sum_probs=145.5

Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHH----HHhCCeEEEEecCC
Q 009517          171 GLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI----ALHGGTLVPYYLDE  246 (533)
Q Consensus       171 ~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~----~~~g~~~~~v~~~~  246 (533)
                      +|+++++++++      .+ +.|+ +++|++|+..+++.+. .+||+|+++.|+|+.+...+    ...|.+++.++.  
T Consensus         2 ~l~~~la~~~g------~~-~~i~-~~sG~~a~~~~~~~~~-~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--   70 (331)
T 1pff_A            2 ALEGKIAKLEH------AE-ACAA-TASGMGAIAASVWTFL-KAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDM--   70 (331)
T ss_dssp             HHHHHHHHHHT------CS-EEEE-ESSHHHHHHHHHHHHC-CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT--
T ss_pred             hHHHHHHHHhC------CC-eEEE-eCChHHHHHHHHHHhc-CCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCC--
Confidence            68899999875      22 4454 4555899999999887 79999999999999987765    457999988875  


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHH-cCCEEEEccccccccccCCCCccc
Q 009517          247 ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK-EGLVLLADEVYQENVYVPEKKFHS  325 (533)
Q Consensus       247 ~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~-~~~~lI~De~y~~~~~~~~~~~~~  325 (533)
                           .|++++++++++      ++++|++++|+||||.+++   +++|.++|++ +|+++|+||+|..+.+..     +
T Consensus        71 -----~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---~~~i~~~~~~~~~~~li~D~a~~~~~~~~-----~  131 (331)
T 1pff_A           71 -----AVPGNIEKHLKP------NTRIVYFETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILTN-----P  131 (331)
T ss_dssp             -----TSTTHHHHTCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHCC-----G
T ss_pred             -----CCHHHHHHhhcC------CCeEEEEECCCCCcCcccC---HHHHHHHHhhhcCCEEEEECCCcccccCC-----h
Confidence                 378889888875      7999999999999999998   9999999999 999999999998654421     1


Q ss_pred             HHHHHhhcCCCCCCceEEEEecCCccCCCCCCCe-eEEEEEecCCH-HHHHHHHHhhhc--cccCChHHHHHHHHHc
Q 009517          326 FKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKR-GGYMEVTGFSA-EVREQIYKVASV--NLCSNISGQILASLVM  398 (533)
Q Consensus       326 ~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~r-iG~v~~~~~~~-~~~~~l~~~~~~--~~~~~~~~q~a~~~~L  398 (533)
                      +     +.   ..+   +++.|+||.+ +.+|.| +||+++   ++ ++++.+......  +.+.+++.++++...+
T Consensus       132 ~-----~~---~~d---~~~~s~~K~~-~~~~~r~~G~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l  193 (331)
T 1pff_A          132 L-----DL---GVD---IVVHSATKYI-NGHTDVVAGLVCS---RADIIAKVKSQGIKDITGAIISPHDAWLITRGT  193 (331)
T ss_dssp             G-----GG---TCS---EEEEETTTTT-SSSSSCCCEEEEE---CHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHH
T ss_pred             h-----hc---CCc---EEEEECcccc-CCCCCceEEEEEe---CcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCc
Confidence            1     11   233   8899999999 678999 899998   77 888888776543  4567777777765555

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=99.95  E-value=2.3e-25  Score=228.56  Aligned_cols=286  Identities=14%  Similarity=0.091  Sum_probs=209.0

Q ss_pred             CcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHH----HHhCCeEEE
Q 009517          166 SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI----ALHGGTLVP  241 (533)
Q Consensus       166 ~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~----~~~g~~~~~  241 (533)
                      .....+|+++++++++        .+++++++|+++|+..+++.++ ++||+|+++.|+|+++...+    ...|.+++.
T Consensus        65 ~~~~~~l~~~la~~~g--------~~~~~~~~sGt~A~~~al~~~~-~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~  135 (392)
T 3qhx_A           65 NPTRTALEAALAAVED--------AAFGRAFSSGMAAADCALRAML-RPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTP  135 (392)
T ss_dssp             CHHHHHHHHHHHHHTT--------CSEEEEESSHHHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHHHTGGGGTCEEEE
T ss_pred             ChHHHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHHh-CCCCEEEEeCCCcchHHHHHHHHHHhcCcEEEE
Confidence            3446788888888864        3478999999999999999988 79999999999999877666    567999999


Q ss_pred             EecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCC
Q 009517          242 YYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEK  321 (533)
Q Consensus       242 v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~  321 (533)
                      ++.+       |++++++++++      ++++|++++|+||||.+.+   +++|+++|++||+++|+|++|..... .. 
T Consensus       136 v~~~-------d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~la~~~g~~li~D~~~~~~~~-~~-  197 (392)
T 3qhx_A          136 VALA-------DLDAVRAAIRP------TTRLIWVETPTNPLLSIAD---IAGIAQLGADSSAKVLVDNTFASPAL-QQ-  197 (392)
T ss_dssp             ECTT-------CHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTT-CC-
T ss_pred             eCCC-------CHHHHHHhhCC------CCeEEEEECCCCCCcEEec---HHHHHHHHHHcCCEEEEECCCccccc-CC-
Confidence            8864       79999999976      8999999999999999988   99999999999999999999986432 11 


Q ss_pred             CcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCC-CeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcC
Q 009517          322 KFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMS  399 (533)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G-~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~  399 (533)
                      +        ..+   ..|   +++.|+||.+ |.+| .|+||+++  .++++++.+..... .+.+.+++.+.++...++
T Consensus       198 ~--------~~~---~~d---i~~~S~sK~l-g~~g~~~~G~v~~--~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~  260 (392)
T 3qhx_A          198 P--------LSL---GAD---VVLHSTTKYI-GGHSDVVGGALVT--NDEELDQSFAFLQNGAGAVPGPFDAYLTMRGLK  260 (392)
T ss_dssp             G--------GGG---TCS---EEEEETTTTT-TCSSCCCCEEEEE--SCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT
T ss_pred             h--------HHh---CCc---EEEEcCcccc-CCCCCceEEEEEE--CcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhh
Confidence            1        011   244   7899999999 6566 79999998  23688888877665 567778888888777764


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEe-cC-----------------CceeEEecccCCCHHHH
Q 009517          400 PPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCN-KA-----------------EGAMYLFPRIQLPEKAI  461 (533)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~-----------------~gg~~~~~~~~~~~~~~  461 (533)
                      .              +....++..++++.+.+.|++.|++..+ .|                 .|++ +++.++....  
T Consensus       261 ~--------------l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~-~~~~l~~~~~--  323 (392)
T 3qhx_A          261 T--------------LVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGM-VSVRMRAGRT--  323 (392)
T ss_dssp             T--------------HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSE-EEEEETTCHH--
T ss_pred             H--------------HHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceE-EEEEeCCcHH--
Confidence            2              2333455667777888888887665433 11                 1444 4444432111  


Q ss_pred             HHHHhcCCCChHHHHHHHHHccceEEEcCCCCCC---C--------------CCCceEEEEecCCcCcHHHHHHHHHHHH
Q 009517          462 KAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ---V--------------PGTWHFRCTILPQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       462 ~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~---~--------------~g~~~iRis~~~~~e~i~~~~~~l~~~l  524 (533)
                               ....+ ...|+..++.+..|..+..   +              -..+.||||++.  +++++.++.|.+++
T Consensus       324 ---------~~~~~-~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~--e~~~~~i~~l~~al  391 (392)
T 3qhx_A          324 ---------AAEQL-CAKTNIFILAESLGSVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGI--EDVADLLDDLKQAL  391 (392)
T ss_dssp             ---------HHHHH-HHHCSSSEECSCCCCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCS--SCHHHHHHHHHHHH
T ss_pred             ---------HHHHH-HHhCCCceECCCCCCCCceeeCcccccccccCHHHcCCCCCeEEEEecc--CCHHHHHHHHHHHh
Confidence                     11222 3445667888887776431   0              123489999984  46778888887765

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=99.94  E-value=2.2e-26  Score=241.66  Aligned_cols=292  Identities=12%  Similarity=0.033  Sum_probs=206.4

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCC---eEEEcCCcCcchHH----HHHHhCCeEE--
Q 009517          170 KGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND---GILCPIPQYPLYSA----SIALHGGTLV--  240 (533)
Q Consensus       170 ~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd---~Vlv~~p~~~~~~~----~~~~~g~~~~--  240 (533)
                      .++++.++++++      .++++|++|+|+++++..+++++. ++|+   +|+++.|+|++...    .++..|+++.  
T Consensus       114 ~~l~~~la~~~g------~~~~~v~~t~g~t~al~~~~~~~~-~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~  186 (465)
T 3e9k_A          114 ESIVGLMKDIVG------ANEKEIALMNALTVNLHLLMLSFF-KPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEES  186 (465)
T ss_dssp             HHHHGGGHHHHT------CCGGGEEECSCHHHHHHHHHHHHC-CCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHHHHHHHcC------CCcCCEEEECCHHHHHHHHHHHhc-cccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceee
Confidence            557777777764      567899999999999999999997 5554   59999999998444    5666888752  


Q ss_pred             ---EEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccc
Q 009517          241 ---PYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY  317 (533)
Q Consensus       241 ---~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~  317 (533)
                         .++.+  +++.+|+++|+++|+++   ++++++|++++|+||||.+++   +++|.++|++||+++|+|++++.   
T Consensus       187 ~v~~~~~~--~~~~~d~~~l~~~i~~~---~~~~~lv~~~~~~n~tG~~~~---l~~i~~la~~~g~~vi~D~a~~~---  255 (465)
T 3e9k_A          187 MRMIKPRE--GEETLRIEDILEVIEKE---GDSIAVILFSGVHFYTGQHFN---IPAITKAGQAKGCYVGFDLAHAV---  255 (465)
T ss_dssp             EEEECCCT--TCSSCCHHHHHHHHHHH---GGGEEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTT---
T ss_pred             eEEEecCC--CCCccCHHHHHHHHHhc---CCCeEEEEEeCcccCcceeec---HHHHHHHHHHcCCEEEEEhhhhc---
Confidence               22332  35688999999999853   127999999999999999998   88999999999999999999975   


Q ss_pred             cCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh----------------
Q 009517          318 VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS----------------  381 (533)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~----------------  381 (533)
                       +..+ ..+.    ++   +.|   +++.|++|.+.+-| .++|++++   ++++++.+.....                
T Consensus       256 -g~~~-~~~~----~~---~~D---~~~~s~~K~l~~gp-~~~g~l~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  319 (465)
T 3e9k_A          256 -GNVE-LYLH----DW---GVD---FACWCSYKYLNAGA-GGIAGAFI---HEKHAHTIKPALVGWFGHELSTRFKMDNK  319 (465)
T ss_dssp             -TTSC-CCHH----HH---TCC---EEEECSSSTTCCCT-TCCCEEEE---CGGGTTTSCCSSCCGGGBCHHHHTTCCSC
T ss_pred             -CCcC-Cchh----hc---CCC---EEEECcccccccCC-CceEEEEE---cHHHHhhcCCcccCccCCCCCcccccCCC
Confidence             2211 2222    22   234   77899999984223 37899888   7776554432100                


Q ss_pred             ----------ccccCChHHHHHHHHHcCCCCCCChhHHHHHHH-HHHHHHHHHHHHHHHHHHHhcC----------CCce
Q 009517          382 ----------VNLCSNISGQILASLVMSPPKVGDESYESYCAE-RDGILSSLARRAKTLEDAFNSL----------EGIT  440 (533)
Q Consensus       382 ----------~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~----------~g~~  440 (533)
                                ...+++.++..++.++++          .+.+. +++++++++++++++.+.|+++          +|+.
T Consensus       320 ~~~~~~~~~~~~gt~~~~~~~a~~aal~----------~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~  389 (465)
T 3e9k_A          320 LQLIPGVCGFRISNPPILLVCSLHASLE----------IFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVN  389 (465)
T ss_dssp             CCBCSSGGGGCCSCCCHHHHHHHHHHHH----------HHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEE
T ss_pred             cCcCCChHHhccCCccHHHHHHHHHHHH----------HHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeE
Confidence                      012556666666666653          12222 6788888999999999999884          6888


Q ss_pred             EecCC----ceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEe-c--CCcCcH
Q 009517          441 CNKAE----GAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTI-L--PQEDKI  513 (533)
Q Consensus       441 ~~~~~----gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~-~--~~~e~i  513 (533)
                      ++.|.    .|.++++.++..              ...+. +.|.++||.+..    .   +.++||||+ .  .++++|
T Consensus       390 ~~~p~~~~~~g~~~~~~~~~~--------------~~~l~-~~L~~~Gi~v~~----~---~~~~iRis~~~~~~t~edi  447 (465)
T 3e9k_A          390 IITPSHVEERGCQLTITFSVP--------------NKDVF-QELEKRGVVCDK----R---NPNGIRVAPVPLYNSFHDV  447 (465)
T ss_dssp             ECSCSSGGGBCSCEEEEECCT--------------TCCHH-HHHHTTTEECEE----E---TTTEEEEBCCTTTCCHHHH
T ss_pred             EeCCCCHhhcccEEEEEecCC--------------HHHHH-HHHHHCCEEEec----C---CCCEEEEeCcccCCCHHHH
Confidence            88775    244555444411              11223 455678999873    2   223999997 3  788999


Q ss_pred             HHHHHHHHHHHHHH
Q 009517          514 PAIVTRLTDFHKNF  527 (533)
Q Consensus       514 ~~~~~~l~~~l~~~  527 (533)
                      ++++++|++++++.
T Consensus       448 ~~~~~~l~~~l~~~  461 (465)
T 3e9k_A          448 YKFTNLLTSILDSA  461 (465)
T ss_dssp             HHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999988754

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=99.94  E-value=3.6e-25  Score=226.87  Aligned_cols=282  Identities=14%  Similarity=0.161  Sum_probs=200.9

Q ss_pred             CcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHH----HHHhCCeEEE
Q 009517          166 SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS----IALHGGTLVP  241 (533)
Q Consensus       166 ~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~----~~~~g~~~~~  241 (533)
                      .....+|+++++++++      .  +++++++++++|+..+++.++ ++||+|+++.|+|+++...    ++..|.+++.
T Consensus        58 ~~~~~~l~~~la~~~g------~--~~~i~~~sG~~ai~~~~~~~~-~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~  128 (389)
T 3acz_A           58 NPTVEQFEEMVCSIEG------A--AGSAAFGSGMGAISSSTLAFL-QKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDL  128 (389)
T ss_dssp             CHHHHHHHHHHHHHHT------C--SEEEEESSHHHHHHHHHTTTC-CTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             ChHHHHHHHHHHHHhC------C--CeEEEeCCHHHHHHHHHHHHh-CCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEE
Confidence            4457789999999874      2  256777778899999999887 7999999999999986665    5778999999


Q ss_pred             EecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCC
Q 009517          242 YYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEK  321 (533)
Q Consensus       242 v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~  321 (533)
                      ++.       .|++++++++++      ++++|++++|+||||.+++   +++|+++|+++|+++|+||+|..+.+.  .
T Consensus       129 v~~-------~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~livD~~~~~~~~~--~  190 (389)
T 3acz_A          129 IDT-------SDVEKVKAAWKP------NTKMVYLESPANPTCKVSD---IKGIAVVCHERGARLVVDATFTSPCFL--K  190 (389)
T ss_dssp             ECT-------TCHHHHHHTCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTC--C
T ss_pred             ECC-------CCHHHHHHhcCC------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccc--C
Confidence            885       379999999876      7999999999999999998   899999999999999999999876441  1


Q ss_pred             CcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCee-EEEEEecCCH-HHHHHHHHhhh-ccccCChHHHHHHHHHc
Q 009517          322 KFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRG-GYMEVTGFSA-EVREQIYKVAS-VNLCSNISGQILASLVM  398 (533)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~ri-G~v~~~~~~~-~~~~~l~~~~~-~~~~~~~~~q~a~~~~L  398 (533)
                      +   +     ++   ..|   +++.|+||.+ +.+|.|+ ||+++   ++ ++++.+..... .+.+.++..+.++...|
T Consensus       191 ~---~-----~~---~~d---i~~~S~sK~~-~~~~~~~~G~v~~---~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l  252 (389)
T 3acz_A          191 P---L-----EL---GAD---IALHSVSKYI-NGHGDVIGGVSSA---KTAEDIATIKFYRKDAGSLMAPMDAFLCARGM  252 (389)
T ss_dssp             G---G-----GT---TCS---EEEEETTTTT-TCSSCCCCEEEEE---SSHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_pred             c---c-----cc---CCe---EEEECChhhc-cCCCCceeEEEEE---CcHHHHHHHHHHHHhcCCCCCHHHHHHHHcCc
Confidence            1   1     11   234   8899999999 6789998 99998   77 88888877654 44556777777777766


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------------CceEec----CCceeEEecccCCCHHH
Q 009517          399 SPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLE--------------GITCNK----AEGAMYLFPRIQLPEKA  460 (533)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--------------g~~~~~----~~gg~~~~~~~~~~~~~  460 (533)
                      +.              +....++..++.+.+.+.|++.+              ++.+..    ..|+++.+ .+..    
T Consensus       253 ~~--------------l~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~-~l~~----  313 (389)
T 3acz_A          253 KT--------------LPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLF-EMKS----  313 (389)
T ss_dssp             TT--------------HHHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEE-EESS----
T ss_pred             cH--------------HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEE-EECC----
Confidence            42              11122333444455555555432              222222    22555443 2321    


Q ss_pred             HHHHHhcCCCChHHHHHHHHHccceEEEc---C------CCCCCC--------------CCCceEEEEecCCcCcHHHHH
Q 009517          461 IKAAEAEKTVPDAFYCRRLLNATGIVLVP---G------SGFGQV--------------PGTWHFRCTILPQEDKIPAIV  517 (533)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~ll~~~gV~v~p---g------~~f~~~--------------~g~~~iRis~~~~~e~i~~~~  517 (533)
                                  ...+..++.+.||.+.+   |      ..+...              -..++||||++..  +.++++
T Consensus       314 ------------~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~--~~~~li  379 (389)
T 3acz_A          314 ------------FEAAKKLMEHLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIE--NVDDII  379 (389)
T ss_dssp             ------------HHHHHHHHTTCSSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSS--CHHHHH
T ss_pred             ------------HHHHHHHHHhCCCcEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccC--CHHHHH
Confidence                        11244677788988877   3      222110              0135999999853  678889


Q ss_pred             HHHHHHHH
Q 009517          518 TRLTDFHK  525 (533)
Q Consensus       518 ~~l~~~l~  525 (533)
                      +.|.++++
T Consensus       380 ~~l~~al~  387 (389)
T 3acz_A          380 ADLKQALE  387 (389)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            98888875

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=99.94  E-value=2e-25  Score=229.48  Aligned_cols=215  Identities=13%  Similarity=0.111  Sum_probs=162.8

Q ss_pred             CCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHH----HHhCCeEE
Q 009517          165 HSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI----ALHGGTLV  240 (533)
Q Consensus       165 ~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~----~~~g~~~~  240 (533)
                      +.....++++.++++++      .  ++.++++++++|+..+++.++ ++||+|+++.|+|+++...+    ...|.+++
T Consensus        63 ~~~~~~~l~~~la~~~g------~--~~~i~~~sG~~a~~~~l~~~~-~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~  133 (398)
T 1gc0_A           63 SNPTLNLLEARMASLEG------G--EAGLALASGMGAITSTLWTLL-RPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLR  133 (398)
T ss_dssp             CCHHHHHHHHHHHHHHT------C--SEEEEESSHHHHHHHHHHHHC-CTTCEEEEESSCCSHHHHHHHHTGGGGTCEEE
T ss_pred             CChHHHHHHHHHHHHhC------C--CcEEEECCHHHHHHHHHHHHh-cCCCEEEEeCCCchhHHHHHHHHHHHcCCEEE
Confidence            44557788888888874      2  255666666899999999998 79999999999999987766    56799998


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCC
Q 009517          241 PYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPE  320 (533)
Q Consensus       241 ~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~  320 (533)
                      .++..       |++++++++++      ++++|++++|+||||.+++   +++|+++|++||+++|+||+|..+.+.. 
T Consensus       134 ~~~~~-------d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~~~-  196 (398)
T 1gc0_A          134 HVDMA-------DLQALEAAMTP------ATRVIYFESPANPNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQR-  196 (398)
T ss_dssp             EECTT-------CHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHCC-
T ss_pred             EECCC-------CHHHHHHhcCC------CCeEEEEECCCCCCccccc---HHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence            88753       79999999876      7999999999999999997   9999999999999999999998755421 


Q ss_pred             CCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCee-EEEEEecCCHHHHH-HHHHhhhc--cccCChHHHHHHHH
Q 009517          321 KKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRG-GYMEVTGFSAEVRE-QIYKVASV--NLCSNISGQILASL  396 (533)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~ri-G~v~~~~~~~~~~~-~l~~~~~~--~~~~~~~~q~a~~~  396 (533)
                       +   +     .+   ..+   +++.|+||.+ +.+|+|+ ||+++   +++++. .+......  +.+.+++.++++..
T Consensus       197 -~---~-----~~---~~d---~~~~S~sK~~-~~~~~~~~G~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (398)
T 1gc0_A          197 -P---L-----EL---GAD---LVVHSATKYL-SGHGDITAGIVVG---SQALVDRIRLQGLKDMTGAVLSPHDAALLMR  257 (398)
T ss_dssp             -G---G-----GG---TCS---EEEEETTTTT-TCSSSCCCEEEEE---CHHHHHHHHHTHHHHHTCCCCCHHHHHHHHH
T ss_pred             -c---h-----hh---Cce---EEEECCcccc-CCCCCCeEEEEEE---ChHHHHHHHHHHhhccCCCCCCHHHHHHHHh
Confidence             1   1     11   233   7899999999 6789998 99988   777665 45544332  34567888887777


Q ss_pred             HcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 009517          397 VMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEG  438 (533)
Q Consensus       397 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  438 (533)
                      .++.              +....++..++.+.+.+.|.++++
T Consensus       258 ~l~~--------------~~~~~~~~~~~~~~l~~~L~~~~~  285 (398)
T 1gc0_A          258 GIKT--------------LNLRMDRHCANAQVLAEFLARQPQ  285 (398)
T ss_dssp             HHTT--------------HHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             ccch--------------HHHHHHHHHHHHHHHHHHHhcCCC
Confidence            6641              233344555666667777766543

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=99.94  E-value=4.6e-26  Score=234.31  Aligned_cols=312  Identities=13%  Similarity=0.117  Sum_probs=202.7

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEE-cCChHHHHHHHHHHhccCCCCeEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFL-TDGASPAVHMMMQLLIRSENDGIL  219 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~-t~G~~~al~~~~~~l~~~~gd~Vl  219 (533)
                      |+.+++++.+......  ....+.+  ...++.+++.+.+.+.+|.+ ++++|++ |+|+++++..+++.++ ++| .++
T Consensus        52 ~~~v~~a~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~la~~~g~~-~~~~i~~~t~g~t~al~~~~~~l~-~~g-v~~  124 (398)
T 2fyf_A           52 RLEQLQTLTTTAAALF--GTSHRQA--PVKNLVGRVRSGLAELFSLP-DGYEVILGNGGATAFWDAAAFGLI-DKR-SLH  124 (398)
T ss_dssp             CHHHHHGGGTTTTTTT--TSCTTSH--HHHHHHHHHHHHHHHHTTCC-TTCEEEEEETCHHHHHHHHHHHTC-SSC-EEE
T ss_pred             CHHHHHHHhhcCCCcc--CcCcCCH--HHHHHHHHHHHHHHHHhCCC-CCceEEEeCCchhHHHHHHHHHhc-CCC-eEE
Confidence            7888887765211100  0112222  12334444555555545643 3468998 9999999999999998 676 233


Q ss_pred             EcCCcCcc-hHHHHHHh--CCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHH
Q 009517          220 CPIPQYPL-YSASIALH--GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIV  296 (533)
Q Consensus       220 v~~p~~~~-~~~~~~~~--g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~  296 (533)
                      +..+.|.. ....+...  |.+++.++++.  ++.++.+     +++      ++++|++++|+||||.+++.+++.++ 
T Consensus       125 v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--g~~~~~~-----i~~------~~~~v~~~~~~nptG~~~~~~~i~~~-  190 (398)
T 2fyf_A          125 LTYGEFSAKFASAVSKNPFVGEPIIITSDP--GSAPEPQ-----TDP------SVDVIAWAHNETSTGVAVAVRRPEGS-  190 (398)
T ss_dssp             EECSHHHHHHHHHHHHCTTSCCCEEEECCT--TCCCCCC-----CCT------TCSEEEEESEETTTTEECCCCCCTTC-
T ss_pred             EeCCHHHHHHHHHHHHhCCCCceEEEecCC--CCCCCcc-----ccC------CCCEEEEeCcCCCcceecchHHhhhh-
Confidence            33333321 12244555  88888888862  3334421     222      78999999999999999995555543 


Q ss_pred             HHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHH
Q 009517          297 DFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQI  376 (533)
Q Consensus       297 ~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l  376 (533)
                           +|+++|+|++|..+..    + .++    .     +.+   +++.|+||++ |++| ++||+++   ++++++.+
T Consensus       191 -----~~~~vivD~a~~~~~~----~-~~~----~-----~~d---i~~~s~sK~~-~~~g-g~g~l~~---~~~~~~~l  243 (398)
T 2fyf_A          191 -----DDALVVIDATSGAGGL----P-VDI----A-----ETD---AYYFAPQKNF-ASDG-GLWLAIM---SPAALSRI  243 (398)
T ss_dssp             -----C-CEEEEECTTTTTTS----C-CCG----G-----GCS---EEEECTTSTT-CSCS-SEEEEEE---CHHHHHHH
T ss_pred             -----cCCeEEEEeccccCCc----c-cCc----c-----cCc---EEEEecCccc-CCCC-ceEEEEE---CHHHHHHh
Confidence                 8999999999986432    1 111    1     123   6789999998 7665 6999998   88988877


Q ss_pred             HHhh---------------------h-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 009517          377 YKVA---------------------S-VNLCSNISGQILASLVMSPPKVGDESYESYCAE--RDGILSSLARRAKTLEDA  432 (533)
Q Consensus       377 ~~~~---------------------~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~  432 (533)
                      .+..                     . ...+++..++.++..+|+          ...++  +++++++++++++++.+.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~----------~~~~~g~~~~~~~~~~~~~~~l~~~  313 (398)
T 2fyf_A          244 EAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQID----------WLVGNGGLDWAVKRTADSSQRLYSW  313 (398)
T ss_dssp             HHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHH----------HHHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred             hcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHH----------HHHHccCHHHHHHHHHHHHHHHHHH
Confidence            4321                     1 223456666666666663          12222  577888899999999999


Q ss_pred             HhcCCCceEec--C--CceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec-
Q 009517          433 FNSLEGITCNK--A--EGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-  507 (533)
Q Consensus       433 L~~~~g~~~~~--~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-  507 (533)
                      |++++|+.+..  |  .+++++|+.++  .+         . +...++.. |.++||.+.+|..+   .+.++||||+. 
T Consensus       314 L~~~~g~~~~~~~~~~~~~~~~~~~~~--~~---------~-~~~~l~~~-L~~~gI~v~~g~~~---~~~~~iRis~~~  377 (398)
T 2fyf_A          314 AQERPYTTPFVTDPGLRSQVVGTIDFV--DD---------V-DAGTVAKI-LRANGIVDTEPYRK---LGRNQLRVAMFP  377 (398)
T ss_dssp             HHHSTTEEESCCSGGGBCSSEEEEEEC--TT---------S-CHHHHHHH-HHHTTCBCCSCCTT---TCSSEEEEECCT
T ss_pred             HHHcCCceeccCChhhcCCcEEEEECC--CC---------C-CHHHHHHH-HHHCCcEEecCccc---CCCCEEEEEecC
Confidence            99988888773  4  35657776553  11         1 23444444 44569999987322   22359999997 


Q ss_pred             -CCcCcHHHHHHHHHHHHHH
Q 009517          508 -PQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       508 -~~~e~i~~~~~~l~~~l~~  526 (533)
                       .+++++++++++|++++++
T Consensus       378 ~~t~e~i~~~~~~l~~~l~~  397 (398)
T 2fyf_A          378 AVEPDDVSALTECVDWVVER  397 (398)
T ss_dssp             TSCHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHHHh
Confidence             6889999999999988754

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=99.94  E-value=6.9e-25  Score=225.25  Aligned_cols=325  Identities=11%  Similarity=0.071  Sum_probs=216.2

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcc--cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHh-ccCCCCe
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQG--IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL-IRSENDG  217 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G--~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~~gd~  217 (533)
                      ++++++++.+.+..       .|.+..|  ..+||+++|++++        .++|++|+|+++|+..+++.+ . ++||+
T Consensus        11 ~~~v~~a~~~~~~~-------~~~~~~g~~~~~l~~~la~~~~--------~~~v~~~~ggt~al~~~~~~l~~-~~gd~   74 (394)
T 1o69_A           11 GGNELKYIEEVFKS-------NYIAPLGEFVNRFEQSVKDYSK--------SENALALNSATAALHLALRVAGV-KQDDI   74 (394)
T ss_dssp             -CCHHHHHHHHHHH-------TTTSCTTHHHHHHHHHHHHHHC--------CSEEEEESCHHHHHHHHHHHTTC-CTTCE
T ss_pred             CHHHHHHHHHHHHc-------CCccCCChHHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHcCC-CCCCE
Confidence            57788888888764       2666567  8899999999984        268999999999999999998 7 79999


Q ss_pred             EEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHH
Q 009517          218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD  297 (533)
Q Consensus       218 Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~  297 (533)
                      |+++.|+|+.+...+...|++++.++++  .+|.+|+++|++++++.   +.++++|++++   |||...+   +++|.+
T Consensus        75 Vl~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~---~~~~~~v~~~~---~~G~~~~---l~~i~~  143 (394)
T 1o69_A           75 VLASSFTFIASVAPICYLKAKPVFIDCD--ETYNIDVDLLKLAIKEC---EKKPKALILTH---LYGNAAK---MDEIVE  143 (394)
T ss_dssp             EEEESSSCGGGTHHHHHTTCEEEEECBC--TTSSBCHHHHHHHHHHC---SSCCCEEEEEC---GGGCCCC---HHHHHH
T ss_pred             EEECCCccHHHHHHHHHcCCEEEEEEeC--CCCCcCHHHHHHHHhcc---cCCceEEEEEC---CCCChhh---HHHHHH
Confidence            9999999999999999999999999987  36789999999999762   11488998886   8997766   999999


Q ss_pred             HHHHcCCEEEEccccc-cccccCCCCcccHHHHHhhcCCCCCCceEEEEecC--CccCCCCCCCeeEEEEEecCCHHHHH
Q 009517          298 FCKKEGLVLLADEVYQ-ENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSV--SKGYYGECGKRGGYMEVTGFSAEVRE  374 (533)
Q Consensus       298 l~~~~~~~lI~De~y~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~--SK~~~gl~G~riG~v~~~~~~~~~~~  374 (533)
                      +|+++|+++|+||+|. ++.+.+. +..+       +    .+   +.+.||  +|.+   +|.|+||+++  .++++++
T Consensus       144 l~~~~~~~li~Dea~~~g~~~~~~-~~~~-------~----~~---~~~~s~s~~K~l---~~~~~G~~~~--~~~~l~~  203 (394)
T 1o69_A          144 ICKENDIVLIEDAAEALGSFYKNK-ALGT-------F----GE---FGVYSYNGNKII---TTSGGGMLIG--KNKEKIE  203 (394)
T ss_dssp             HHHHTTCEEEEECTTCTTCEETTE-ETTS-------S----SS---EEEEECCTTSSS---CCSSCEEEEE--SCHHHHH
T ss_pred             HHHHcCCEEEEECcCcccceeCCc-cccc-------c----cC---cEEEEEeCCccC---CCCCceEEEE--CCHHHHH
Confidence            9999999999999998 6666432 1100       0    12   345566  5654   4789999998  2378888


Q ss_pred             HHHHhhhcc-cc--------------CChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 009517          375 QIYKVASVN-LC--------------SNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGI  439 (533)
Q Consensus       375 ~l~~~~~~~-~~--------------~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~  439 (533)
                      .+....... .+              .+.+...++...+              +.+++..++++++++++.+.|.++  +
T Consensus       204 ~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l--------------~~l~~~~~~~~~~~~~l~~~L~~~--~  267 (394)
T 1o69_A          204 KARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQM--------------EVLEQRVLKKREIYEWYKEFLGEY--F  267 (394)
T ss_dssp             HHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHH--------------TTHHHHHHHHHHHHHHHHHHHTTT--E
T ss_pred             HHHHHHHhccccCccccccccCcccCcCHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhccc--c
Confidence            887654311 11              1223333322223              223446677888888999999876  5


Q ss_pred             eEecCC----cee-EEecccCCCHH------HHHHHHh----cCCCChHHHHHHHHHccceEEEcCCCCCC-----CC--
Q 009517          440 TCNKAE----GAM-YLFPRIQLPEK------AIKAAEA----EKTVPDAFYCRRLLNATGIVLVPGSGFGQ-----VP--  497 (533)
Q Consensus       440 ~~~~~~----gg~-~~~~~~~~~~~------~~~~~~~----~~~~~~~~~~~~ll~~~gV~v~pg~~f~~-----~~--  497 (533)
                      .+..+.    +++ .+++.++....      .......    .+. +...+ .+.|.++||.+++|.....     ..  
T Consensus       268 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l-~~~L~~~gI~v~~~~~~~~~~p~~~~~~  345 (394)
T 1o69_A          268 SFLDELENSRSNRWLSTALINFDKNELNACQKDINISQKNITLHP-KISKL-IEDLKNKQIETRPLWKAMHTQEVFKGAK  345 (394)
T ss_dssp             ECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCH-HHHHH-HHHHHHTTCCCBCCCCCGGGCGGGTTCE
T ss_pred             cccCCCCCCcceeEEEEEEecchhhcccccccccccccccccccc-CHHHH-HHHHHHcCCcccccCCccccchhhhccC
Confidence            544432    343 23433431100      0000000    000 12233 3556678999999853210     00  


Q ss_pred             --C--------CceEEEEec--CCcCcHHHHHHHHHHHHHHHHHH
Q 009517          498 --G--------TWHFRCTIL--PQEDKIPAIVTRLTDFHKNFMDK  530 (533)
Q Consensus       498 --g--------~~~iRis~~--~~~e~i~~~~~~l~~~l~~~~~~  530 (533)
                        +        ...+|+...  .+++++++++++|+++++.-..+
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~t~edi~~~~~~l~~~~~~~~~~  390 (394)
T 1o69_A          346 AYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIKAGSHH  390 (394)
T ss_dssp             EEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC-----
T ss_pred             CCCChHHHHHhcCeEEccCCCCCCHHHHHHHHHHHHHHHhccccc
Confidence              0        023444443  88999999999999987765543

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=99.94  E-value=1.3e-24  Score=224.57  Aligned_cols=227  Identities=15%  Similarity=0.141  Sum_probs=166.1

Q ss_pred             ccccCCC--cccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHH----H
Q 009517          160 TGAYSHS--QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI----A  233 (533)
Q Consensus       160 ~~~Y~~~--~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~----~  233 (533)
                      .+.|+..  ....+++++++++++        .+++++++|+++|+..+++.++ ++||+|+++.|+|+.....+    .
T Consensus        47 ~~~y~~~~~~~~~~l~~~la~~~g--------~~~~~~~~~gt~a~~~al~~l~-~~gd~vi~~~~~~~~~~~~~~~~~~  117 (412)
T 2cb1_A           47 GYVYARQKDPTAKALEERLKALEG--------ALEAVVLASGQAATFAALLALL-RPGDEVVAAKGLFGQTIGLFGQVLS  117 (412)
T ss_dssp             SCSBTTTCCHHHHHHHHHHHHHHT--------CSEEEEESSHHHHHHHHHHTTC-CTTCEEEEETTCCHHHHHHHHHTTT
T ss_pred             CcCcCCCCChHHHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHHh-CCCCEEEEeCCCchhHHHHHHHHHH
Confidence            3456644  557888999988874        2489999999999999999987 79999999999998766554    3


Q ss_pred             HhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccc
Q 009517          234 LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQ  313 (533)
Q Consensus       234 ~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~  313 (533)
                      ..|.+++.++.        |+++|++++++      ++++|++++|+||||.+++   +++|+++|++||+++|+||+|.
T Consensus       118 ~~g~~~~~~~~--------~~~~l~~~i~~------~~~~v~~~~~~n~~G~~~~---l~~i~~l~~~~~~~li~D~~~~  180 (412)
T 2cb1_A          118 LMGVTVRYVDP--------EPEAVREALSA------KTRAVFVETVANPALLVPD---LEALATLAEEAGVALVVDNTFG  180 (412)
T ss_dssp             TTTCEEEEECS--------SHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGG
T ss_pred             HcCCEEEEECC--------CHHHHHHHhcc------CCeEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEECCCc
Confidence            47889888875        38899998876      7999999999999999997   9999999999999999999998


Q ss_pred             cccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCC------------------------
Q 009517          314 ENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFS------------------------  369 (533)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~------------------------  369 (533)
                      .+.+... +   .     ..   ..+   +++.|+||.+ +.+|.|+|++++....                        
T Consensus       181 ~~~~~~~-~---~-----~~---~~d---i~~~S~~K~~-~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  244 (412)
T 2cb1_A          181 AAGALCR-P---L-----AW---GAH---VVVESLTKWA-SGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALR  244 (412)
T ss_dssp             TTTTSCC-G---G-----GG---TCS---EEEEETTTTT-TCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHG
T ss_pred             cccccCC-c---c-----cc---CCe---EEEECCcccc-cCCCCcEEEEEEeccccccccccccccccccccchhhccc
Confidence            7522111 1   1     11   234   8899999999 6689999999874211                        


Q ss_pred             -HHHHHHHHHhh-h-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEe
Q 009517          370 -AEVREQIYKVA-S-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCN  442 (533)
Q Consensus       370 -~~~~~~l~~~~-~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~  442 (533)
                       .++.+.++... . .....++...+++...++              .+....++..++.+.+.+.|.+.+++..+
T Consensus       245 ~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~--------------~l~~~~~~~~~~~~~l~~~L~~~~~v~~v  306 (412)
T 2cb1_A          245 ARCFPERVRTLGLSLCGMALSPFNAYLLFQGLE--------------TVALRVARMSETARFLAERLQGHPKVKAL  306 (412)
T ss_dssp             GGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGG--------------GHHHHHHHHHHHHHHHHHHHHTCTTCSEE
T ss_pred             hHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCc--------------hHHHHHHHHHHHHHHHHHHHHcCCCeeEE
Confidence             04445554433 2 222345555555544442              12233444566778899999888887744

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=99.94  E-value=3.7e-26  Score=239.97  Aligned_cols=328  Identities=14%  Similarity=0.129  Sum_probs=217.0

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhc-------cC
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI-------RS  213 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-------~~  213 (533)
                      ++++++++.+++..........|+. ....+|++++++.+.+..+  ...++|++++||++|++.+++.++       ..
T Consensus        81 ~p~v~~A~~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~l~~~~~--~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~  157 (472)
T 1ohv_A           81 HPALVKLVQQPQNVSTFINRPALGI-LPPENFVEKLRESLLSVAP--KGMSQLITMACGSCSNENAFKTIFMWYRSKERG  157 (472)
T ss_dssp             CHHHHHHHHCGGGHHHHHCCCCTTT-SCBTTHHHHHHHTGGGGCC--TTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHhhccccccccccc-ccHHHHHHHHHHHHHHhCC--CCcCEEEEeCCchhHHHHHHHHHHHHhhhhccC
Confidence            7899999988764210000112333 2357899999998776544  356799999999999999999873       01


Q ss_pred             -----------------CC---CeEEEcCCcCcchHHHHHHh-CCe-------------EEEEecCCCC---C--C----
Q 009517          214 -----------------EN---DGILCPIPQYPLYSASIALH-GGT-------------LVPYYLDEAT---G--W----  250 (533)
Q Consensus       214 -----------------~g---d~Vlv~~p~~~~~~~~~~~~-g~~-------------~~~v~~~~~~---~--~----  250 (533)
                                       +|   ++|++.+++|+++...+... |..             .+.+|.....   .  +    
T Consensus       158 ~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  237 (472)
T 1ohv_A          158 QSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQE  237 (472)
T ss_dssp             TCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHHHHHH
T ss_pred             cccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCCCcccCCCcccCccccccccchhH
Confidence                             35   89999999999987655433 321             1122211000   0  0    


Q ss_pred             -CCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCcc-CCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHH
Q 009517          251 -GLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKK  328 (533)
Q Consensus       251 -~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~-~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~  328 (533)
                       ..|+++|+++|++....+.++++|++++.+|+||. +++++.+++|+++|++||+++|+||+|++|.+.|.  +.++..
T Consensus       238 ~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~--~~~~~~  315 (472)
T 1ohv_A          238 EARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGK--FWAHEH  315 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SSGGGG
T ss_pred             HHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCC--chhccc
Confidence             12688999999764322236888888877888996 67899999999999999999999999998766542  222221


Q ss_pred             HHhhcCCCC--CCceEEEEecCCcc-CCCCCCCeeEEEEEecCCHHHHHHHHHhh-hccccCChHHHHHHHHHcCCCCCC
Q 009517          329 VSRSMGYGE--KDISLVSFQSVSKG-YYGECGKRGGYMEVTGFSAEVREQIYKVA-SVNLCSNISGQILASLVMSPPKVG  404 (533)
Q Consensus       329 ~~~~~~~~~--~~~~vi~i~S~SK~-~~gl~G~riG~v~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~a~~~~L~~~~~~  404 (533)
                      +  ++   .  +|     +.||||. + |  |   ||++    ++++. .+.... ..++++++++++++.++|+     
T Consensus       316 ~--gv---~~~~D-----i~t~sK~~l-~--G---G~~~----~~~~~-~~~~~~~~~T~~~~~~~~aaa~aal~-----  369 (472)
T 1ohv_A          316 W--GL---DDPAD-----VMTFSKKMM-T--G---GFFH----KEEFR-PNAPYRIFNTWLGDPSKNLLLAEVIN-----  369 (472)
T ss_dssp             G--CC---SSCCS-----EEEECGGGS-S--E---EEEE----CGGGS-CSSSSSSCCSSSSCHHHHHHHHHHHH-----
T ss_pred             c--CC---CCCCC-----EEEEccccc-c--C---CccC----chhhc-ccccccccCccCccHHHHHHHHHHHH-----
Confidence            1  11   2  45     5589998 5 3  4   6664    44442 122222 2567889999998888873     


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CC-ceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHH
Q 009517          405 DESYESYCAERDGILSSLARRAKTLEDAFNSL----EG-ITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRL  479 (533)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g-~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  479 (533)
                            .... +.+.++++++++++++.|+++    |+ +..+++.|.|+.+ ++.  ...          ....++..+
T Consensus       370 ------~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~~g~~~~~-~~~--~~~----------~~~~~~~~l  429 (472)
T 1ohv_A          370 ------IIKR-EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSF-DTP--DES----------IRNKLISIA  429 (472)
T ss_dssp             ------HHHH-TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETTEEEE-ECS--SHH----------HHHHHHHHH
T ss_pred             ------HHHh-CCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecCCceEEEE-EeC--Chh----------HHHHHHHHH
Confidence                  1111 345677777888888877664    53 5557777766554 443  110          123445555


Q ss_pred             HHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 009517          480 LNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       480 l~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~~  527 (533)
                      + ++||.+.|+.       .++|||++.  .++++|++++++|+++++++
T Consensus       430 ~-~~Gv~~~~~g-------~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~  471 (472)
T 1ohv_A          430 R-NKGVMLGGCG-------DKSIRFRPTLVFRDHHAHLFLNIFSDILADF  471 (472)
T ss_dssp             H-HTTEECEEET-------TTEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred             H-HCCeEEecCC-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence            5 5899999841       238999774  88999999999999988653

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.94  E-value=1.9e-26  Score=234.48  Aligned_cols=306  Identities=16%  Similarity=0.189  Sum_probs=217.2

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHh-ccCCCCeEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL-IRSENDGIL  219 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~~gd~Vl  219 (533)
                      ++++.+++.+.+..      ..|.+..+..+|+++++++++        .+++++++||++|+..+++.+ . .+||+|+
T Consensus        15 ~~~v~~a~~~~~~~------~~~~~~~~~~~l~~~la~~~~--------~~~~~~~~sGt~al~~al~~~~~-~~gd~Vi   79 (367)
T 3nyt_A           15 KDKIDAGIQRVLRH------GQYILGPEVTELEDRLADFVG--------AKYCISCANGTDALQIVQMALGV-GPGDEVI   79 (367)
T ss_dssp             HHHHHHHHHHHHHH------CCCSSCHHHHHHHHHHHHHHT--------CSEEEEESCHHHHHHHHHHHTTC-CTTCEEE
T ss_pred             CHHHHHHHHHHHhc------CCccCChHHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHhCC-CCcCEEE
Confidence            56777777777765      246667778999999999985        247999999999999999999 6 7999999


Q ss_pred             EcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHH
Q 009517          220 CPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC  299 (533)
Q Consensus       220 v~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~  299 (533)
                      ++.|+|+.+...+...|++++.++++++ ++.+|++++++++++      ++++|+   |+||||...+   +++|.++|
T Consensus        80 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~-~~~~d~~~l~~~i~~------~~~~v~---~~~~~G~~~~---~~~i~~la  146 (367)
T 3nyt_A           80 TPGFTYVATAETVALLGAKPVYVDIDPR-TYNLDPQLLEAAITP------RTKAII---PVSLYGQCAD---FDAINAIA  146 (367)
T ss_dssp             EESSSCTHHHHHHHHTTCEEEEECBCTT-TCSBCGGGTGGGCCT------TEEEEC---CBCGGGCCCC---HHHHHHHH
T ss_pred             ECCCccHHHHHHHHHcCCEEEEEecCCc-cCCcCHHHHHHhcCc------CCcEEE---eeCCccChhh---HHHHHHHH
Confidence            9999999999999999999999999864 578999999999865      788887   8889998877   88999999


Q ss_pred             HHcCCEEEEcccccc-ccccCCCCcccHHHHHhhcCCCCCCceEEEEecC--CccCCCCCCCeeEEEEEecCCHHHHHHH
Q 009517          300 KKEGLVLLADEVYQE-NVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSV--SKGYYGECGKRGGYMEVTGFSAEVREQI  376 (533)
Q Consensus       300 ~~~~~~lI~De~y~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~--SK~~~gl~G~riG~v~~~~~~~~~~~~l  376 (533)
                      +++|+++|+|++|.. ..+.+. ...       .    ..|   +++.||  +|.+ |.+|. .|++++  .++++++.+
T Consensus       147 ~~~~~~li~D~a~~~g~~~~~~-~~~-------~----~~d---i~~~Sf~~~K~l-~~~g~-gg~~~~--~~~~l~~~~  207 (367)
T 3nyt_A          147 SKYGIPVIEDAAQSFGASYKGK-RSC-------N----LST---VACTSFFPSAPL-GCYGD-GGAIFT--NDDELATAI  207 (367)
T ss_dssp             HHTTCCBEEECTTTTTCEETTE-ETT-------S----SSS---EEEEECCTTSSS-CCSSC-CEEEEE--SCHHHHHHH
T ss_pred             HHcCCEEEEECccccCCeECCe-ecc-------C----CCC---EEEEECCCCCcC-CCcCc-eeEEEe--CCHHHHHHH
Confidence            999999999999974 333321 100       0    123   778887  8998 65576 888887  357888888


Q ss_pred             HHhhhc-------------cccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEec
Q 009517          377 YKVASV-------------NLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNK  443 (533)
Q Consensus       377 ~~~~~~-------------~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~  443 (533)
                      ......             ++..+.+.++++...++              .++...++.++.++++.+.|+++ ++.+..
T Consensus       208 ~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~--------------~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~  272 (367)
T 3nyt_A          208 RQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLE--------------IFEEEIALRQKVAAEYDLSLKQV-GIGTPF  272 (367)
T ss_dssp             HHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHH--------------THHHHHHHHHHHHHHHHHHHHHT-TCCCCC
T ss_pred             HHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhccC-CeeccC
Confidence            765431             24455666655555442              23444555666777888888887 544322


Q ss_pred             -CCceeEEec--ccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCC--------CCCC---------CCceEE
Q 009517          444 -AEGAMYLFP--RIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGF--------GQVP---------GTWHFR  503 (533)
Q Consensus       444 -~~gg~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f--------~~~~---------g~~~iR  503 (533)
                       +.+....|.  .+..+             +... +.+.|+++||.+.++...        ....         ....+|
T Consensus       273 ~~~~~~~~~~~~~~~~~-------------~~~~-l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  338 (367)
T 3nyt_A          273 IEVNNISVYAQYTVRMD-------------NRES-VQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMS  338 (367)
T ss_dssp             CCTTEECCCSSEEEECS-------------SHHH-HHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEE
T ss_pred             CCCCCceeeEEEEEEeC-------------CHHH-HHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEE
Confidence             222111111  12211             1233 345567789999876431        0000         023789


Q ss_pred             EEec--CCcCcHHHHHHHHHH
Q 009517          504 CTIL--PQEDKIPAIVTRLTD  522 (533)
Q Consensus       504 is~~--~~~e~i~~~~~~l~~  522 (533)
                      +++.  .++++++++++.|++
T Consensus       339 lp~~~~~t~~~i~~v~~~~~~  359 (367)
T 3nyt_A          339 LPMHPYLDTASIKIICAALTN  359 (367)
T ss_dssp             ECCCTTCCHHHHHHHHHHHHC
T ss_pred             ccCCCCCCHHHHHHHHHHHHH
Confidence            9985  788888877777654

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=99.94  E-value=1.5e-24  Score=221.54  Aligned_cols=303  Identities=11%  Similarity=0.129  Sum_probs=215.6

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchH--HHHHHhC--CeEEEEec
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYS--ASIALHG--GTLVPYYL  244 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~--~~~~~~g--~~~~~v~~  244 (533)
                      ..++.+++++.+.+.+|.+   +.|++|+|++++++.++..+  .+||+|++++++|+++.  ..+...|  .+++.++.
T Consensus        33 ~~~~~~~~~~~l~~~~~~~---~~v~~~~sgt~a~~~~~~~~--~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  107 (379)
T 3ke3_A           33 FQEVMNDLLSNLKTVYNAE---AAVIIPGSGTYGMEAVARQL--TIDEDCLIIRNGWFSYRWTQILEKGKFAKSSTVLTA  107 (379)
T ss_dssp             HHHHHHHHHHHHHHHHTCS---EEEEEESCHHHHHHHHHHHH--CTTCEEEEEECSHHHHHHHHHHHHHCCSSEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHhCCC---CEEEEcCChhHHHHHHHHhC--CCCCeEEEEeCCchhHHHHHHHHHhCCCCceEEEec
Confidence            3456666666666666633   67899999999999998665  58999999999998754  3455556  47777776


Q ss_pred             CCC------CCC-CCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccc
Q 009517          245 DEA------TGW-GLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVY  317 (533)
Q Consensus       245 ~~~------~~~-~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~  317 (533)
                      +..      ..| .+|++++++++++.     ++++|++++++||||.+++.+++++|+++|++||+++|+|++++ .  
T Consensus       108 ~~~g~~~~~~~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~-g--  179 (379)
T 3ke3_A          108 ERTEDTEAPKPFAPVDIETAVAKIKED-----KSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-G--  179 (379)
T ss_dssp             EESSCCSSCCCEECCCHHHHHHHHHHH-----TCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-T--
T ss_pred             cccccccccCCCCCCCHHHHHHHHhhc-----CCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc-C--
Confidence            431      112 47999999999754     68999999999999999999999999999999999999999986 2  


Q ss_pred             cCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh----------------
Q 009517          318 VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS----------------  381 (533)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~----------------  381 (533)
                       + . ...+...       .-|   +++.|++|+++|  +.++|++++   ++++++.+.....                
T Consensus       180 -~-~-~~~~~~~-------~~d---~~~~s~~K~l~~--~~g~g~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  241 (379)
T 3ke3_A          180 -C-V-WLDMKEL-------GID---VLISAPQKGWSS--TPCAGLVML---SAAAIKKVESTESNCFSLDLKQWLTIMRA  241 (379)
T ss_dssp             -T-C-CCCHHHH-------TCS---EEEECTTTTTCS--CCCEEEEEE---CHHHHHHHHTCCCSCSTTCHHHHHHHHHH
T ss_pred             -C-c-ccccccc-------CCC---EEEecchhhcCC--CCceEEEEE---CHHHHHhhhcCCCCceeecHHHHHHHHHh
Confidence             1 1 2222221       234   678899999843  345899988   8888887764210                


Q ss_pred             -------ccccCChHHHHHHHHHcCCCCCCChhHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCceEecCCc---eeEE
Q 009517          382 -------VNLCSNISGQILASLVMSPPKVGDESYESYCAE-RDGILSSLARRAKTLEDAFNSLEGITCNKAEG---AMYL  450 (533)
Q Consensus       382 -------~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~g---g~~~  450 (533)
                             ..+++++..++++.++|+          ...++ ++.+.++++++++++++.|+++ |+.+..+.+   ....
T Consensus       242 ~~~g~~~~~~t~~~~~~~a~~aal~----------~~~~~g~~~~~~~~~~l~~~l~~~l~~~-g~~~~~~~~~~~~~i~  310 (379)
T 3ke3_A          242 YENGGHAYHATMPTDSLRQFRDAIL----------EAKEIGFDILRDAQWELGNRVRKVLTDK-GIESVAAEGFEAPGVV  310 (379)
T ss_dssp             HHTTSCCCSSCCCHHHHHHHHHHHH----------HHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSBCTTCBCSSEE
T ss_pred             hhccCCCCCCCCCHHHHHHHHHHHH----------HHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCEecCCccccCceEE
Confidence                   012567777777766663          11222 5678888899999999999998 887765432   2122


Q ss_pred             ecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCC--CCCCceEEEEec--CCcCcHHHHHHHHHHHHHH
Q 009517          451 FPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ--VPGTWHFRCTIL--PQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~--~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~  526 (533)
                      .+..+  ..            +..+ ...|.++||.+.+|..+..  ..+.+.||||+.  +++++|++++++|++++++
T Consensus       311 ~~~~~--~~------------~~~~-~~~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~  375 (379)
T 3ke3_A          311 VSYTE--RD------------DMHK-GSAFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEKALDE  375 (379)
T ss_dssp             EEECS--CH------------HHHS-SHHHHHTTCCCEECCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHH
T ss_pred             EEccC--Cc------------chHH-HHHHHHCCeEEeCCccccccccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHH
Confidence            21121  10            1111 2456778999999987642  222458999995  7899999999999999987


Q ss_pred             HH
Q 009517          527 FM  528 (533)
Q Consensus       527 ~~  528 (533)
                      +.
T Consensus       376 ~~  377 (379)
T 3ke3_A          376 VL  377 (379)
T ss_dssp             HH
T ss_pred             hc
Confidence            64

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=99.94  E-value=9.7e-27  Score=240.14  Aligned_cols=383  Identities=12%  Similarity=0.010  Sum_probs=249.0

Q ss_pred             CCCCCcccccCcCcccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCC
Q 009517           50 PTSSPAITVDSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPS  129 (533)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~  129 (533)
                      +.+++.+.+..+++.++...+.|+  ++.++++...++.||++      |||+..|....                    
T Consensus        48 ~~~a~~~~pgg~~~~~~~~~~~P~--~i~~a~G~~l~D~dG~~------ylD~~~g~~~~--------------------   99 (454)
T 4ao9_A           48 FEAQARYMPGANSRSVLFYAPFPL--TIARGEGAALWDADGHR------YADFIAEYTAG--------------------   99 (454)
T ss_dssp             HHHHTTTSGGGCSSGGGCCSSCCC--EEEEEETTEEEETTCCE------EEESSGGGGTT--------------------
T ss_pred             HHHHhhhCCCCCCCCccccCCCCc--cEEEeecCEEEECCCCE------EEEccccHHhh--------------------
Confidence            344455566667777776655544  77888888888888888      88886664221                    


Q ss_pred             CCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHH
Q 009517          130 ILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQL  209 (533)
Q Consensus       130 ~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~  209 (533)
                        ..+++    ++++++++.+++.+..    ....+..-..+|.+.+++.+       ...+.|+++++|+||++.+++.
T Consensus       100 --~lGH~----hp~v~~Av~~q~~~~~----~~~~~~~~~~~lae~l~~~~-------p~~~~v~f~~SGsEA~e~Aikl  162 (454)
T 4ao9_A          100 --VYGHS----APEIRDAVIEAMQGGI----NLTGHNLLEGRLARLICERF-------PQIEQLRFTNSGTEANLMALTA  162 (454)
T ss_dssp             --TTCSC----CHHHHHHHHHHHHTCS----CCCSEESSHHHHHHHHHHHS-------TTCSEEEEESSHHHHHHHHHHH
T ss_pred             --cccCC----CHHHHHHHHHHHhcCC----CccCCcHHHHHHHHHHHHhC-------CCCCEEEEeCchHHHHHHHHHH
Confidence              11222    6999999999998632    22222222455666666654       2367899999999999999998


Q ss_pred             hccCCC-CeEEEcCCcCcchHHHHHHh------CCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCC
Q 009517          210 LIRSEN-DGILCPIPQYPLYSASIALH------GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP  282 (533)
Q Consensus       210 l~~~~g-d~Vlv~~p~~~~~~~~~~~~------g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NP  282 (533)
                      ++...| ++|+....+|++....+...      ......+|+       -|++.+++.+++.   ++++.+||++..++.
T Consensus       163 Ar~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~-------nd~~~l~~~l~~~---~~~iAavIvEPv~g~  232 (454)
T 4ao9_A          163 ALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPY-------NDAQTARAQIERH---GPEIAVVLVEPMQGA  232 (454)
T ss_dssp             HHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECT-------TCHHHHHHHHHHT---GGGEEEEEECSEEST
T ss_pred             HHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCC-------chHHHHHHHHhhc---CCceEEEEeccccCC
Confidence            863233 78999999999865322111      112223332       2789999999864   346888888766666


Q ss_pred             Ccc-CCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeE
Q 009517          283 TGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGG  361 (533)
Q Consensus       283 tG~-~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG  361 (533)
                      .|. .++++.|++|.++|++||+++|+||++++  ..|.  ...     .+..++.||     +.+++|.++  .|+++|
T Consensus       233 ~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG--R~G~--~~a-----~e~~gv~PD-----i~t~gK~lg--gG~Pig  296 (454)
T 4ao9_A          233 SGCIPGQPDFLQALRESATQVGALLVFDEVMTS--RLAP--HGL-----ANKLGIRSD-----LTTLGKYIG--GGMSFG  296 (454)
T ss_dssp             TTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG--GGST--TCH-----HHHHTCCCS-----EEEEEGGGG--TTSSCE
T ss_pred             CCccCCchhhHHHHHHHHhhcCCEEEEECCCcC--CCcc--ccc-----hhccCCCCc-----EEEeccccC--CCCcce
Confidence            775 56788899999999999999999999986  4443  111     122233788     668999995  489999


Q ss_pred             EEEEecCCHHHHHHHHHh-----hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 009517          362 YMEVTGFSAEVREQIYKV-----ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL  436 (533)
Q Consensus       362 ~v~~~~~~~~~~~~l~~~-----~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  436 (533)
                      ++++   .+++++.+...     +..|++.|+++++++.+.|+...            .+.+.++++++.++|++.|+++
T Consensus       297 a~~~---~~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~------------~~~~~~~~~~~g~~l~~~L~~l  361 (454)
T 4ao9_A          297 AFGG---RADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLF------------TPEAAGALAERGEALRARLNAL  361 (454)
T ss_dssp             EEEE---CHHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTS------------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeee---HHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHh------------ccChhHHHHHHHHHHHHHHHHH
Confidence            9998   99999887542     23678899999999988875221            1334455566666666666553


Q ss_pred             ----CCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCc
Q 009517          437 ----EGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDK  512 (533)
Q Consensus       437 ----~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~  512 (533)
                          +-+..+...|.|+.+.-.+.+..........+......++..+ .++||++.|.       +  .+.+++.+|+++
T Consensus       362 ~~~~~~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l-l~~Gv~~~p~-------~--~~~~s~~~T~~d  431 (454)
T 4ao9_A          362 CANEGVAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHL-LNEDIYSSPR-------G--FVVLSLPLTDAD  431 (454)
T ss_dssp             HHHHTBSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHH-HHTTEECCTT-------C--EEECCTTCCHHH
T ss_pred             HhhCCCCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHH-HHCCEEEcCC-------C--CEEEeCCCCHHH
Confidence                3333456666655432111111000000000000112334444 4679999862       2  455677799999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 009517          513 IPAIVTRLTDFHKNFM  528 (533)
Q Consensus       513 i~~~~~~l~~~l~~~~  528 (533)
                      |++++++|++++.++.
T Consensus       432 Id~~l~al~~~l~~~~  447 (454)
T 4ao9_A          432 IDRYVAAIGSFIGGHG  447 (454)
T ss_dssp             HHHHHHHHHHHHHHSG
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            9999999999998753

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=99.94  E-value=1.6e-24  Score=229.19  Aligned_cols=335  Identities=9%  Similarity=-0.002  Sum_probs=231.8

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEE---EcCChHHHHHHHHHHhccCC---
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIF---LTDGASPAVHMMMQLLIRSE---  214 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~---~t~G~~~al~~~~~~l~~~~---  214 (533)
                      ++.+.+++.+.+...    ...|....+..++++.+.+++.+.+|.+.++++++   +|+|+++++..++.++. .+   
T Consensus        69 ~~~v~~~l~~~~~~~----~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~-~~~~~  143 (502)
T 3hbx_A           69 EPECDKLIMSSINKN----YVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFK-RKWQN  143 (502)
T ss_dssp             CHHHHHHHHHTTTCB----TTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHH-HHHHH
T ss_pred             CHHHHHHHHHHhccC----CCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHH-HHHhH
Confidence            677888877776552    33344455578899999999999889765466554   48999999999988876 34   


Q ss_pred             -----CC-----eEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCc
Q 009517          215 -----ND-----GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTG  284 (533)
Q Consensus       215 -----gd-----~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG  284 (533)
                           |+     +|+++.++|..+...+...|++++.+++++ +++.+|+++|+++|++      ++++|++++|+||||
T Consensus       144 ~~~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~------~t~~v~~~~~~n~tG  216 (502)
T 3hbx_A          144 KRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLSE-GYYVMDPQQAVDMVDE------NTICVAAILGSTLNG  216 (502)
T ss_dssp             HHHHTTCCCSCCEEEEETTCCHHHHHHHHHTTCEEEEECCBT-TBCSCCHHHHHHHCCT------TEEEEEEEBSCTTTC
T ss_pred             HHHhcCCCCCCcEEEEcCCchHHHHHHHHHcCceeEEEecCC-CcCcCCHHHHHHHHhh------CCEEEEEecCCCCCC
Confidence                 66     899999999999999999999999999875 3578999999999987      799999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHc------CCEEEEccccccccc---cCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCC
Q 009517          285 QVLAEENQRAIVDFCKKE------GLVLLADEVYQENVY---VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGE  355 (533)
Q Consensus       285 ~~~s~~~l~~i~~l~~~~------~~~lI~De~y~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl  355 (533)
                      .+.+   +++|.++|+++      |+++++|++|.++..   .+..+ ..+.         ..+ -.++..+.+|.+  +
T Consensus       217 ~~~~---l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~-~~~~---------~~~-~D~v~~s~hK~l--~  280 (502)
T 3hbx_A          217 EFED---VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELE-WDFR---------LPL-VKSINVSGHKYG--L  280 (502)
T ss_dssp             CBCC---HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCC-CSTT---------STT-EEEEEEETTTTT--C
T ss_pred             cccC---HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccc-cccC---------CCC-ceEEEECccccc--C
Confidence            9988   88899999999      999999999987641   12111 1110         122 235567889975  3


Q ss_pred             CCCeeEEEEEecCCHHHHHHHHHhhhcc-----------ccC---ChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHH
Q 009517          356 CGKRGGYMEVTGFSAEVREQIYKVASVN-----------LCS---NISGQILASLVMSPPKVGDESYESYCAERDGILSS  421 (533)
Q Consensus       356 ~G~riG~v~~~~~~~~~~~~l~~~~~~~-----------~~~---~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~  421 (533)
                      .+.++||+++  .+++.+.........+           +..   ..+++.++...+.            .+.+..+.++
T Consensus       281 ~p~g~G~~~~--~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg------------~~g~~~~~~~  346 (502)
T 3hbx_A          281 VYAGIGWVIW--RNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLG------------HEGYRNVMEN  346 (502)
T ss_dssp             CCSSCEEEEE--SSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHH------------HHHHHHHHHH
T ss_pred             CCCCeEEEEE--eCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHH------------HHHHHHHHHH
Confidence            5778999887  2444432111110000           111   2233333333321            2334667777


Q ss_pred             HHHHHHHHHHHHhcCCCceEecC--CceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCC
Q 009517          422 LARRAKTLEDAFNSLEGITCNKA--EGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGT  499 (533)
Q Consensus       422 ~~~~~~~l~~~L~~~~g~~~~~~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~  499 (533)
                      ..++++++.+.|++++++.++.+  ..+++ +++++...         +. +...+ .+.|.++||.+..........+.
T Consensus       347 ~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v-~f~~~~~~---------~~-~~~~l-~~~L~~~Gi~v~~~~~p~~~~~~  414 (502)
T 3hbx_A          347 CRENMIVLREGLEKTERFNIVSKDEGVPLV-AFSLKDSS---------CH-TEFEI-SDMLRRYGWIVPAYTMPPNAQHI  414 (502)
T ss_dssp             HHHHHHHHHHHHHTTTCEEECSCSSSSSEE-EEEESSCS---------SC-CHHHH-HHHHHTTTCBCCEEECCTTCTTC
T ss_pred             HHHHHHHHHHHHHhCCCEEEEeCCCCceEE-EEEecCCC---------cC-CHHHH-HHHHHhCCcEEeeccCCcccCCc
Confidence            88888899999999977988765  44444 33343110         01 12233 35567889987543222222344


Q ss_pred             ceEEEEec--CCcCcHHHHHHHHHHHHHHHHH
Q 009517          500 WHFRCTIL--PQEDKIPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       500 ~~iRis~~--~~~e~i~~~~~~l~~~l~~~~~  529 (533)
                      .++||++.  .+.++++.+++.|+++++.+.+
T Consensus       415 ~~lRisv~~~~t~edid~li~~L~~~l~~l~~  446 (502)
T 3hbx_A          415 TVLRVVIREDFSRTLAERLVIDIEKVMRELDE  446 (502)
T ss_dssp             EEEEEECCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            58999996  7889999999999999987754

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=99.93  E-value=2.6e-24  Score=228.06  Aligned_cols=332  Identities=12%  Similarity=0.054  Sum_probs=226.6

Q ss_pred             ccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc-------CCC-----C-eEEEcCCcCc
Q 009517          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-------SEN-----D-GILCPIPQYP  226 (533)
Q Consensus       160 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-------~~g-----d-~Vlv~~p~~~  226 (533)
                      ...|....+..++++++.+++.+.+|.+.+.+++++|+|+++|+..++.+++.       .+|     + .|+++.+.|+
T Consensus       121 ~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~  200 (504)
T 2okj_A          121 MFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHY  200 (504)
T ss_dssp             SSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCT
T ss_pred             CCchhhChHHHHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchH
Confidence            34566666678889999889888888654477999999999999999998851       146     6 7999999999


Q ss_pred             chHHHHHHhCC---eEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcC
Q 009517          227 LYSASIALHGG---TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEG  303 (533)
Q Consensus       227 ~~~~~~~~~g~---~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~  303 (533)
                      .+...+...|.   +++.+|+++  ++.+|+++|+++|++....|.++++|++++|+||||.+.+   +++|+++|++||
T Consensus       201 s~~~~~~~~g~g~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~---l~~I~~la~~~g  275 (504)
T 2okj_A          201 SIKKAGAALGFGTDNVILIKCNE--RGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP---IQEIADICEKYN  275 (504)
T ss_dssp             HHHHHHHHTTSCGGGEEEECBCT--TSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC---HHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCcccEEEEecCC--CCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC---HHHHHHHHHHcC
Confidence            99999998887   899999863  5789999999999876555657899999999999999977   899999999999


Q ss_pred             CEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhcc
Q 009517          304 LVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVN  383 (533)
Q Consensus       304 ~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~~  383 (533)
                      +++++|++|.++.+... .+..   ....+.  ..|   +++.+++|.+ +.| +++|++++  .+++++..........
T Consensus       276 ~~lhvD~a~~~~~~~~~-~~~~---~~~g~~--~~D---~i~~~~hK~~-~~p-~~~g~l~~--~~~~~~~~~~~~~~~~  342 (504)
T 2okj_A          276 LWLHVDAAWGGGLLMSR-KHRH---KLNGIE--RAN---SVTWNPHKMM-GVL-LQCSAILV--KEKGILQGCNQMCAGY  342 (504)
T ss_dssp             CEEEEEETTGGGGGGCT-TTGG---GGTTGG--GCS---EEEECTTSTT-CCC-SCCEEEEE--SSTTHHHHHHCCCCSS
T ss_pred             CEEEEehhhhhHHHhCH-hhHh---hcCCcc--cCC---EEEECchhhc-CCC-cceEEEEE--ECHHHHHHHhcCCCcc
Confidence            99999999998765321 1111   111110  134   5677899988 533 78999998  2345655432111100


Q ss_pred             c----------------------cCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceE
Q 009517          384 L----------------------CSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITC  441 (533)
Q Consensus       384 ~----------------------~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~  441 (533)
                      .                      ....+.+.++..++.            .+.++++.++..++++++.+.|++++|+++
T Consensus       343 l~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg------------~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~  410 (504)
T 2okj_A          343 LFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKG------------TVGFENQINKCLELAEYLYAKIKNREEFEM  410 (504)
T ss_dssp             SCCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHTTCTTEEE
T ss_pred             ccCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhh------------HHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence            0                      012444555444431            234566778888999999999999889988


Q ss_pred             ec---CCceeEEecccCCCHHHH------HHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec---CC
Q 009517          442 NK---AEGAMYLFPRIQLPEKAI------KAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL---PQ  509 (533)
Q Consensus       442 ~~---~~gg~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~---~~  509 (533)
                      +.   |..++++|..++  ....      +..... ......+... |.+.|+.+..+..+.  ...+++|++++   .+
T Consensus       411 ~~~~~p~~~~v~f~~~~--~~~~~~~~~~~~~~~~-~~~~~~l~~~-L~~~G~~~~~~~~~~--~~~~~lRis~~~~~~t  484 (504)
T 2okj_A          411 VFNGEPEHTNVCFWYIP--QSLRGVPDSPQRREKL-HKVAPKIKAL-MMESGTTMVGYQPQG--DKANFFRMVISNPAAT  484 (504)
T ss_dssp             SSSSCCSSSCEEEEECC--GGGSSCCCCHHHHHHH-TTHHHHHHHH-HHHHTSCEEEEEEET--TEEEEEEECCCCTTCC
T ss_pred             EecCCCCeEEEEEEEeC--ccccccccchhhHHHH-HHHHHHHHHH-HHhCCcEEEEeeEEC--CceEEEEEEeCCCCCC
Confidence            74   777777764322  1000      000000 0001233334 455675433222222  11248999996   68


Q ss_pred             cCcHHHHHHHHHHHHHHH
Q 009517          510 EDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       510 ~e~i~~~~~~l~~~l~~~  527 (533)
                      +++|++++++|+++++++
T Consensus       485 ~edi~~~~~~l~~~~~~~  502 (504)
T 2okj_A          485 QSDIDFLIEEIERLGQDL  502 (504)
T ss_dssp             HHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            889999999999887654

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=99.93  E-value=1.3e-23  Score=221.84  Aligned_cols=338  Identities=10%  Similarity=0.036  Sum_probs=229.8

Q ss_pred             HHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCC-------CCCEEEcCChHHHHHHHHHHhccCC
Q 009517          142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPAD-------PNDIFLTDGASPAVHMMMQLLIRSE  214 (533)
Q Consensus       142 ~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~-------~~~i~~t~G~~~al~~~~~~l~~~~  214 (533)
                      ..+.+.+...+..    ....|....+..++++++++++.+.+|.+.+       ...+++|+|+++|+..++.++. ++
T Consensus        88 ~~~~~~~~~~~n~----~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~-~~  162 (486)
T 1js3_A           88 AMLADMLCGAIGC----IGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAAR-TK  162 (486)
T ss_dssp             HHHHHHHHHHHCC----CCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHHHhCc----CccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHH-HH
Confidence            3455555555543    2456777777889999999999998886532       2468999999999999987764 21


Q ss_pred             ---------CC--------e--EEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEE
Q 009517          215 ---------ND--------G--ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALV  275 (533)
Q Consensus       215 ---------gd--------~--Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~ii  275 (533)
                               ||        +  |+++.++|..+..+++..|++++.+|++  .++.+|+++|+++|++..+.|..+.+|+
T Consensus       163 ~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~G~~v~~v~~d--~~~~~d~~~L~~~i~~~~~~g~~p~~vv  240 (486)
T 1js3_A          163 VVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSD--GKFAMRASALQEALERDKAAGLIPFFVV  240 (486)
T ss_dssp             HHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECCC--TTSCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HhhhhhccCccchhcccCCCEEEEECCCCcHHHHHHHHhCCCceEEeecC--CCCCCCHHHHHHHHHHHHhCCCCceEEE
Confidence                     42        3  7889999999999999999999999986  3678999999999988544444456889


Q ss_pred             EeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCC
Q 009517          276 VINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGE  355 (533)
Q Consensus       276 l~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl  355 (533)
                      +++|+||||.+-+   +++|+++|++||+++++|++|.++.+... ....   ....+.  ..|   .+..+++|.+ ++
T Consensus       241 ~~~~~n~tG~~~~---l~~I~~la~~~~~~lhvD~a~g~~~~~~~-~~~~---~~~g~~--~ad---si~~~~hK~~-~~  307 (486)
T 1js3_A          241 ATLGTTSCCSFDN---LLEVGPICHEEDIWLHVDAAYAGSAFICP-EFRH---LLNGVE--FAD---SFNFNPHKWL-LV  307 (486)
T ss_dssp             EEBSCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTGGGGGGST-TTGG---GGTTGG--GCS---EEEECHHHHS-SC
T ss_pred             EeCCCCCCCCCCC---HHHHHHHHHHcCCEEEEehhhHHHHHHCH-HHHH---HhcCcc--ccC---eeEEchhhhc-CC
Confidence            9999999999866   99999999999999999999988654321 1111   111110  123   3456889988 54


Q ss_pred             CCCeeEEEEEecCCHHH-HHHHHH----hhh--c---------------cccCChHHHHHHHHHcCCCCCCChhHHHHHH
Q 009517          356 CGKRGGYMEVTGFSAEV-REQIYK----VAS--V---------------NLCSNISGQILASLVMSPPKVGDESYESYCA  413 (533)
Q Consensus       356 ~G~riG~v~~~~~~~~~-~~~l~~----~~~--~---------------~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~  413 (533)
                      | +++||+++  .+++. .+.+..    +..  .               +.....+.+.++...+            -.+
T Consensus       308 p-~~~G~l~~--~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~------------g~~  372 (486)
T 1js3_A          308 N-FDCSAMWV--KRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMY------------GVK  372 (486)
T ss_dssp             C-SSCEEEEE--SCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHH------------HHH
T ss_pred             C-cceEEEEE--eCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHH------------hHH
Confidence            4 89999988  34443 333210    000  0               0011234444444333            124


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCceEec-CCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCC
Q 009517          414 ERDGILSSLARRAKTLEDAFNSLEGITCNK-AEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSG  492 (533)
Q Consensus       414 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~  492 (533)
                      .++++.+++.++++++.+.|+++||++++. |+.+++.| .+......           ...+...+ .+.|+.+.++..
T Consensus       373 g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f-~~~~~~~~-----------~~~l~~~L-~~~g~~~~~~~~  439 (486)
T 1js3_A          373 GLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCF-RLKGSDGL-----------NEALLERI-NSARKIHLVPCR  439 (486)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSSEEEE-EESSCHHH-----------HHHHHHHH-HHHTSCBCEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCceeEEEE-EecChHHH-----------HHHHHHHH-HhcCCEEEEEEE
Confidence            467778888889999999999988998864 67777665 23211110           23344444 445654333222


Q ss_pred             CCCCCCCceEEEEec---CCcCcHHHHHHHHHHHHHHHHHH
Q 009517          493 FGQVPGTWHFRCTIL---PQEDKIPAIVTRLTDFHKNFMDK  530 (533)
Q Consensus       493 f~~~~g~~~iRis~~---~~~e~i~~~~~~l~~~l~~~~~~  530 (533)
                      |.   +.+++|+++.   .++++|++++++|+++++++.++
T Consensus       440 ~~---~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~~~~~  477 (486)
T 1js3_A          440 LR---GQFVLRFAICSRKVESGHVRLAWEHIRGLAAELLAA  477 (486)
T ss_dssp             ET---TEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred             EC---CEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence            32   3459999984   46779999999999999887654

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=99.93  E-value=5.5e-24  Score=225.45  Aligned_cols=345  Identities=12%  Similarity=0.041  Sum_probs=231.7

Q ss_pred             HHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC------------
Q 009517          146 ERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS------------  213 (533)
Q Consensus       146 ~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~------------  213 (533)
                      +.+...+..    ....|....+..++++++++++.+.+|.+.+.+.+++|+|+++|+..++.+++ +            
T Consensus       114 e~l~~~~~~----~~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~-~~~~~~~~~~G~~  188 (511)
T 3vp6_A          114 EWLTSTANT----NMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAAR-YKYFPEVKTKGMA  188 (511)
T ss_dssp             HHHHHHHCC----CSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHH-HHHCTHHHHHCGG
T ss_pred             HHHHHHhcc----CCCCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHH-HHhhhhhhhcCcc
Confidence            444455544    35678888889999999999999999977667799999999999999988876 3            


Q ss_pred             --CCCeEEEcCCcCcchHHHHHHhCC---eEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCC
Q 009517          214 --ENDGILCPIPQYPLYSASIALHGG---TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLA  288 (533)
Q Consensus       214 --~gd~Vlv~~p~~~~~~~~~~~~g~---~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s  288 (533)
                        +++.|+++.++|..+..+++..|.   +++.++.+.  ++.+|+++|+++|++....|..+++|++++++||||.+-+
T Consensus       189 ~~~~~~v~~s~~~H~s~~~~~~~~g~g~~~~~~v~~d~--~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~  266 (511)
T 3vp6_A          189 AVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNE--RGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP  266 (511)
T ss_dssp             GSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCT--TSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCC
T ss_pred             cCCCeEEEECCCchHHHHHHHHHcCCCCCcEEEeecCC--CCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCccccc
Confidence              467899999999999999999998   899999874  5789999999999886555656899999999999999966


Q ss_pred             HHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecC
Q 009517          289 EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGF  368 (533)
Q Consensus       289 ~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~  368 (533)
                         +++|+++|++||+++++|++|.+...... .+.   .....+.  ..|   +++.+++|++ +.| ..+|++++  .
T Consensus       267 ---l~~I~~ia~~~~~~lhvD~a~~~~~~~~~-~~~---~~~~g~~--~aD---sv~~~~hK~l-~~p-~g~g~l~~--~  330 (511)
T 3vp6_A          267 ---IQEIADICEKYNLWLHVDAAWGGGLLMSR-KHR---HKLNGIE--RAN---SVTWNPHKMM-GVL-LQCSAILV--K  330 (511)
T ss_dssp             ---HHHHHHHHHHHTCEEEEEETTGGGGGGCT-TTG---GGGTTGG--GCS---EEEECTTSTT-CCC-SCCEEEEE--S
T ss_pred             ---HHHHHHHHHHcCCEEEEEccchhhHhhCh-hhh---hhccCCc--cCC---EEEECccccc-CCC-cCeEEEEE--e
Confidence               99999999999999999999988655321 111   1111110  123   5567999998 433 66788877  3


Q ss_pred             CHHHHHHHHHhhhccc----------------------cCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 009517          369 SAEVREQIYKVASVNL----------------------CSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRA  426 (533)
Q Consensus       369 ~~~~~~~l~~~~~~~~----------------------~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (533)
                      +++++.........+.                      ....+...++...+            -.+.++++.++..++.
T Consensus       331 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~------------g~~gl~~~~~~~~~~a  398 (511)
T 3vp6_A          331 EKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAK------------GTVGFENQINKCLELA  398 (511)
T ss_dssp             STTHHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHH------------HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhccCCccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHH------------hHHHHHHHHHHHHHHH
Confidence            5555544322110000                      01223333333332            1245677888889999


Q ss_pred             HHHHHHHhcCCCceEec---CCceeEEecccCCCHHHH------HHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCC
Q 009517          427 KTLEDAFNSLEGITCNK---AEGAMYLFPRIQLPEKAI------KAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVP  497 (533)
Q Consensus       427 ~~l~~~L~~~~g~~~~~---~~gg~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~  497 (533)
                      +++.+.|+++||++++.   |..++.+|. +. |.+..      ......+ .....+. +.|.++|+.+.. ..+. ..
T Consensus       399 ~~l~~~L~~~pg~~l~~~~~p~~~~v~f~-~~-p~~~~~~~~~~~~~~~l~-~~~~~l~-~~L~~~G~~~~~-~~~~-~~  472 (511)
T 3vp6_A          399 EYLYAKIKNREEFEMVFNGEPEHTNVCFW-YI-PQSLRGVPDSPQRREKLH-KVAPKIK-ALMMESGTTMVG-YQPQ-GD  472 (511)
T ss_dssp             HHHHHHHHSCTTEEESSSSCCSSSCEEEE-EC-CGGGSSCCCCHHHHHHHH-HHHHHHH-HHHHHHTSCEEE-EEEE-TT
T ss_pred             HHHHHHHhcCCCEEEEecCCCCeEEEEEE-Ee-CccccccccchhHHHHHH-HHHHHHH-HHHHhcCCEEEE-EEEe-CC
Confidence            99999999999999875   566655542 21 21100      0000000 0011233 445556765443 1111 12


Q ss_pred             CCceEEEEec---CCcCcHHHHHHHHHHHHHHHHHHh
Q 009517          498 GTWHFRCTIL---PQEDKIPAIVTRLTDFHKNFMDKF  531 (533)
Q Consensus       498 g~~~iRis~~---~~~e~i~~~~~~l~~~l~~~~~~~  531 (533)
                      +.+++||+++   .+.++|+.+++.|+++-+.+..++
T Consensus       473 ~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~~~~~~~  509 (511)
T 3vp6_A          473 KANFFRMVISNPAATQSDIDFLIEEIERLGQDLHHHH  509 (511)
T ss_dssp             EEEEEEECCCCTTCCHHHHHHHHHHHHHHHC------
T ss_pred             ceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhhhhcc
Confidence            3348999983   678899999999998877765543

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.93  E-value=5.8e-25  Score=225.51  Aligned_cols=213  Identities=13%  Similarity=0.099  Sum_probs=160.3

Q ss_pred             CcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHH----HHHHhCCeEEE
Q 009517          166 SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA----SIALHGGTLVP  241 (533)
Q Consensus       166 ~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~----~~~~~g~~~~~  241 (533)
                      ..+..+||+++|++++      .  +++++++++++|+..+++ ++ ++||+|+++.|+|++...    .++..|.+++.
T Consensus        54 ~~~~~~lr~~la~~~g------~--~~~i~~~sGt~a~~~al~-~~-~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~  123 (393)
T 1n8p_A           54 NPNRENLERAVAALEN------A--QYGLAFSSGSATTATILQ-SL-PQGSHAVSIGDVYGGTHRYFTKVANAHGVETSF  123 (393)
T ss_dssp             CHHHHHHHHHHHHHTT------C--SEEEEESCHHHHHHHHHH-TS-CSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEE
T ss_pred             ChhHHHHHHHHHHHhC------C--CcEEEECChHHHHHHHHH-Hc-CCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEE
Confidence            3457899999999974      2  256666666999999999 77 799999999999986444    34557889888


Q ss_pred             EecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHc----CCEEEEccccccccc
Q 009517          242 YYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKE----GLVLLADEVYQENVY  317 (533)
Q Consensus       242 v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~----~~~lI~De~y~~~~~  317 (533)
                      ++.+       | +++++++++      ++++|++++|+||||.+++   +++|+++|+++    |+++|+||+|..+.+
T Consensus       124 v~~~-------d-~~l~~~i~~------~t~lv~~~~~~nptG~~~~---l~~i~~la~~~~~~~~~~livD~a~~~~~~  186 (393)
T 1n8p_A          124 TNDL-------L-NDLPQLIKE------NTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPYI  186 (393)
T ss_dssp             ESSH-------H-HHHHHHSCS------SEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHHH
T ss_pred             eCCC-------h-HHHHHhccc------CceEEEEECCCCCcceecC---HHHHHHHHHHhCCCCCCEEEEeCCcccccc
Confidence            8764       6 888888865      7999999999999999998   99999999999    999999999998665


Q ss_pred             cCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCee-EEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHH
Q 009517          318 VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRG-GYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILAS  395 (533)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~ri-G~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~  395 (533)
                      . . +    ..    +   ..+   +++.|+||.+ |++|+|+ ||+++  .++++++.+..... .....++..+.++.
T Consensus       187 ~-~-~----~~----~---~~d---i~~~S~sK~~-g~~G~rigG~~~~--~~~~~~~~l~~~~~~~g~~~~~~~~~~~~  247 (393)
T 1n8p_A          187 S-N-P----LN----F---GAD---IVVHSATKYI-NGHSDVVLGVLAT--NNKPLYERLQFLQNAIGAIPSPFDAWLTH  247 (393)
T ss_dssp             C-C-G----GG----G---TCS---EEEEETTTTT-TCSSCCCCEEEEE--SCHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_pred             C-C-H----HH----c---CCe---EEEEECcccc-cCCCCceeEEEEe--CCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            2 1 1    11    1   233   8899999998 7789999 99887  24788888876654 33455666666655


Q ss_pred             HHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 009517          396 LVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEG  438 (533)
Q Consensus       396 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  438 (533)
                      ..++.              +....++..++++.+.+.|.+.+.
T Consensus       248 ~~l~~--------------~~~~~~~~~~~~~~l~~~L~~~~~  276 (393)
T 1n8p_A          248 RGLKT--------------LHLRVRQAALSANKIAEFLAADKE  276 (393)
T ss_dssp             HHHTT--------------HHHHHHHHHHHHHHHHHHHTSCTT
T ss_pred             hccch--------------HHHHHHHHHHHHHHHHHHHHhCCC
Confidence            55531              233344455666777778877644

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=99.93  E-value=5.5e-24  Score=219.92  Aligned_cols=287  Identities=13%  Similarity=0.084  Sum_probs=196.4

Q ss_pred             cccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHH----HHHHhCCeEEEE
Q 009517          167 QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA----SIALHGGTLVPY  242 (533)
Q Consensus       167 ~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~----~~~~~g~~~~~v  242 (533)
                      ....+|++++|++++        .+..+++++|++|+..++++++ ++||+|++++|+|.++..    .+...|.+++.+
T Consensus        82 p~~~~le~~lA~l~g--------~~~~v~~~sG~~Ai~~al~al~-~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v  152 (430)
T 3ri6_A           82 PTVEDLEQRLKNLTG--------ALGVLALGSGMAAISTAILTLA-RAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFV  152 (430)
T ss_dssp             HHHHHHHHHHHHHHT--------CSEEEEESCHHHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHHHHHC--------CCcEEEECCHHHHHHHHHHHHh-CCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEe
Confidence            446788888888874        2346666677899999999998 899999999999998877    667889999999


Q ss_pred             ecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCC
Q 009517          243 YLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKK  322 (533)
Q Consensus       243 ~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~  322 (533)
                      +.+       |++++++++++      ++++|++++|+||||.+++   +++|+++|+++|+++|+|++|....+..  +
T Consensus       153 ~~~-------d~~~l~~ai~~------~t~~v~~e~p~NptG~~~d---l~~i~~la~~~g~~livD~a~~~~~~~~--~  214 (430)
T 3ri6_A          153 DVM-------DSLAVEHACDE------TTKLLFLETISNPQLQVAD---LEALSKVVHAKGIPLVVDTTMTPPYLLE--A  214 (430)
T ss_dssp             CTT-------CHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTSCTTTCC--G
T ss_pred             CCC-------CHHHHHHhhCC------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccCC--h
Confidence            864       79999999976      7999999999999999998   8899999999999999999998543311  1


Q ss_pred             cccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHH------------------HHHHHHhh-h-c
Q 009517          323 FHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEV------------------REQIYKVA-S-V  382 (533)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~------------------~~~l~~~~-~-~  382 (533)
                              ..+   ..|   +++.|+||.+ |.+|..+|.+++...+..+                  +..+.... . .
T Consensus       215 --------~~~---g~d---iv~~S~sK~l-~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~  279 (430)
T 3ri6_A          215 --------KRL---GVD---IEVLSSTKFI-SGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNL  279 (430)
T ss_dssp             --------GGG---TCS---EEEEECCCEE-ETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHH
T ss_pred             --------HHc---CCE---EEEECCcccc-cCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhc
Confidence                    011   123   7899999999 4456555555442223211                  22222211 1 2


Q ss_pred             cccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceE-ecCC----------------
Q 009517          383 NLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITC-NKAE----------------  445 (533)
Q Consensus       383 ~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~-~~~~----------------  445 (533)
                      ....++...+++...+              +.+....++..+++..+.+.|++.|++.. ..|.                
T Consensus       280 g~~~~~~~a~l~l~~l--------------~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~  345 (430)
T 3ri6_A          280 GPSLSPHNAYLQSLGL--------------ETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRY  345 (430)
T ss_dssp             CCCCCHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSS
T ss_pred             CCCCCHHHHHHHHhhh--------------hhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCC
Confidence            2334444444333322              34455556667888899999998888764 3343                


Q ss_pred             ceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCC--------------------CCCCceEEEE
Q 009517          446 GAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ--------------------VPGTWHFRCT  505 (533)
Q Consensus       446 gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~--------------------~~g~~~iRis  505 (533)
                      ||+.+|+.++.+.            ....++ ..++..++.+.+|..|..                    .-..++||||
T Consensus       346 Gg~~lsf~l~~~~------------~~~~~~-~~l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRls  412 (430)
T 3ri6_A          346 AGSILTFELESKE------------ASYRFM-DALKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLS  412 (430)
T ss_dssp             CCSEEEEECSSHH------------HHHHHH-HHCSSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEE
T ss_pred             CceEEEEEECCHH------------HHHHHH-HhCCcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEE
Confidence            6746665554111            112222 344556777777876641                    0123589999


Q ss_pred             ecCCcCcHHHHHHHHHHHH
Q 009517          506 ILPQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       506 ~~~~~e~i~~~~~~l~~~l  524 (533)
                      ++.  |+.+.+++.|++++
T Consensus       413 vG~--E~~~dl~~dl~~al  429 (430)
T 3ri6_A          413 VGI--EEIEDLKEDILQAL  429 (430)
T ss_dssp             CCS--SCHHHHHHHHHHHH
T ss_pred             ecc--CCHHHHHHHHHHhh
Confidence            985  56788888888776

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=99.92  E-value=2.9e-23  Score=211.60  Aligned_cols=316  Identities=14%  Similarity=0.121  Sum_probs=211.2

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCC-CcccHHHHHHH-HHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHh-ccCCCCe
Q 009517          141 SADSIERAWQILDQIPGRATGAYSH-SQGIKGLRDTI-AAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL-IRSENDG  217 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~-~~G~~~lr~ai-a~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~~gd~  217 (533)
                      ++++++++.+.+...    .  |.+ .....+|++++ |++++       ..+++++++|+++|+..++..+ + ++||+
T Consensus        15 ~~~i~~a~~~~~~~~----~--~~~~~~~~~~l~~~~~a~~~g-------~~~~~v~~~sgt~al~~al~~l~~-~~Gd~   80 (377)
T 3ju7_A           15 VIEYLDELKEIDASH----I--YTNYGPINQRFEQTIMSGFFQ-------NRGAVTTVANATLGLMAAIQLKKR-KKGKY   80 (377)
T ss_dssp             GGGGHHHHHHHHHHT----C--CSSSCHHHHHHHHHHHHHTST-------TCSEEEEESCHHHHHHHHHHHHSC-TTCCE
T ss_pred             cHHHHHHHHHHHHcC----C--cccCCHHHHHHHHHHHHHHhC-------CCCeEEEeCCHHHHHHHHHHHcCC-CCcCE
Confidence            577888888888761    2  332 23478999999 98864       1467899999999999999998 6 79999


Q ss_pred             EEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCC--eeEEEEeCCCCCCccCCCHHHHHHH
Q 009517          218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT--VRALVVINPGNPTGQVLAEENQRAI  295 (533)
Q Consensus       218 Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~--~~~iil~~p~NPtG~~~s~~~l~~i  295 (533)
                      |+++.|+|..+...+...|++++.++++++ +|.+|++++++++...     +  +++|+   |+||||.+.+   +++|
T Consensus        81 Vi~~~~~~~~~~~~~~~~G~~~~~v~~~~~-~~~~d~~~l~~~i~~~-----~~~tk~v~---~~~~~G~~~~---~~~i  148 (377)
T 3ju7_A           81 ALMPSFTFPATPLAAIWCGLEPYFIDISID-DWYMDKTVLWDKIEEL-----KEEVAIVV---PYATFGSWMN---LEEY  148 (377)
T ss_dssp             EEEESSSCTHHHHHHHHTTCEEEEECBCTT-TCSBCHHHHHHHHHHH-----GGGEEEEC---CBCGGGBCCC---CHHH
T ss_pred             EEECCCCcHHHHHHHHHcCCEEEEEecCCc-cCCcCHHHHHHHHhcC-----CCCceEEE---EECCCCCccC---HHHH
Confidence            999999999999999999999999999753 7899999999999432     5  88887   7789999988   7888


Q ss_pred             HHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecC--CccCCCCCCCeeEEEEEecCCHHHH
Q 009517          296 VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSV--SKGYYGECGKRGGYMEVTGFSAEVR  373 (533)
Q Consensus       296 ~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~--SK~~~gl~G~riG~v~~~~~~~~~~  373 (533)
                      .++|+ ||++||+|++|.........+.      ...    ..+   +.+.||  +|++ + +| +.|++++  .++++.
T Consensus       149 ~~la~-~~~~vi~D~a~a~g~~~~~~~~------g~~----~~d---~~~~S~~~~K~l-~-~g-~gG~~~~--~~~~l~  209 (377)
T 3ju7_A          149 EELEK-KGVPVVVDAAPGFGLMNGGMHY------GQD----FSG---MIIYSFHATKPF-G-IG-EGGLIYS--KNEEDI  209 (377)
T ss_dssp             HHHHH-TTCCBEEECTTCTTCEETTEET------TTT----CSS---EEEEECBTTSSS-C-CB-SCEEEEE--SCHHHH
T ss_pred             HHHHh-cCCEEEEECCCccCCeECCEec------cCC----CCc---EEEEECCCCCcC-C-CC-CcEEEEE--CCHHHH
Confidence            99999 9999999999975332111110      000    123   445565  6988 5 35 6788876  378888


Q ss_pred             HHHHHhhhc-------------cccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-
Q 009517          374 EQIYKVASV-------------NLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGI-  439 (533)
Q Consensus       374 ~~l~~~~~~-------------~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~-  439 (533)
                      +.+..+...             .+..+.+.++++...|              +.++...++.+++++.+.+.|++++++ 
T Consensus       210 ~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l--------------~~l~~~~~~~~~~~~~~~~~L~~~~~~~  275 (377)
T 3ju7_A          210 QRIKRMGNFGFDTNRECTMMGFNCKMSEYAAAIGIATM--------------KKWDDKLKERTRISEWYKQLLQSNGLMK  275 (377)
T ss_dssp             HHHHHHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHH--------------HTHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred             HHHHHHHhcCCCCCCceeeccccCCCCHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence            888776531             1234445444444433              334455556666777788888877543 


Q ss_pred             -eEecCCc--eeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCC--CCC-----C--C---------C
Q 009517          440 -TCNKAEG--AMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSG--FGQ-----V--P---------G  498 (533)
Q Consensus       440 -~~~~~~g--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~--f~~-----~--~---------g  498 (533)
                       .+....+  ..+.+.-+..+..          .+.+. +.+.|+++||.+..+..  ...     .  .         .
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~-l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  344 (377)
T 3ju7_A          276 KGWQLQKTEAVIQQFMPILCPEE----------VRNKQ-VIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIA  344 (377)
T ss_dssp             TTCBCCCCSCBCCSSEEEECCTT----------SCHHH-HHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHH
T ss_pred             ccccCCCCCcceEEEEEEEeCCh----------hhHHH-HHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHH
Confidence             2222111  1111111222211          01223 34667889999987651  110     0  0         0


Q ss_pred             CceEEEEec--CCcCcHHHHHHHHHHHHHH
Q 009517          499 TWHFRCTIL--PQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       499 ~~~iRis~~--~~~e~i~~~~~~l~~~l~~  526 (533)
                      .+.+||.+.  .++++++++++.|++++..
T Consensus       345 ~~~l~lp~~~~~t~~di~~v~~~l~~~~~~  374 (377)
T 3ju7_A          345 KRIVSLPLWEGMTKEIVEQIVICLGQKVVS  374 (377)
T ss_dssp             HHEEEECCCTTCCHHHHHHHHHHHTC----
T ss_pred             hCEEECCCCCCCCHHHHHHHHHHHHHHHhc
Confidence            237999995  8889999999998887765

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=99.92  E-value=2.3e-22  Score=211.71  Aligned_cols=337  Identities=12%  Similarity=0.037  Sum_probs=230.7

Q ss_pred             HHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCC--------CCEEEcCChHHHHHHHHHHhccC-
Q 009517          143 DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADP--------NDIFLTDGASPAVHMMMQLLIRS-  213 (533)
Q Consensus       143 ~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~--------~~i~~t~G~~~al~~~~~~l~~~-  213 (533)
                      .+.+.+...+..    ....|....+..++++++++++.+.+|.+...        ...++|+|+++++..++.+++.. 
T Consensus        94 ~~~~~~~~~~n~----~~~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~  169 (481)
T 4e1o_A           94 LLGDMLADAINC----LGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNK  169 (481)
T ss_dssp             HHHHHHHHHHCC----CCSSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCc----ccCCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHH
Confidence            333444455544    35678888889999999999999998865332        36789999999999988877511 


Q ss_pred             -----------------CCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEE
Q 009517          214 -----------------ENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVV  276 (533)
Q Consensus       214 -----------------~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil  276 (533)
                                       +++.|+++.++|..+...+...|.+++.+|+++  ++.+|+++|+++|++....|..+.+|++
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~~~~v~~~~--~~~~d~~~Le~~i~~~~~~g~~~~~vv~  247 (481)
T 4e1o_A          170 ILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVDD--NFSLRGEALQKAIEEDKQRGLVPVFVCA  247 (481)
T ss_dssp             HHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHHHTCEEEEECCCT--TSCCCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             HHHhhhcCcccccccccCCeEEEEcCcchHHHHHHHHhCCCceEEEEcCC--CCcCCHHHHHHHHHHHHhCCCCcEEEEE
Confidence                             467899999999999999999999999999863  6789999999999886555555788888


Q ss_pred             eCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCC
Q 009517          277 INPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGEC  356 (533)
Q Consensus       277 ~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~  356 (533)
                      +.++|+||.+-+   +++|+++|++||+++++|++|.+..+... ...   .....+.  ..|   .+..+++|++++ |
T Consensus       248 ~~~~t~~G~id~---l~~I~~la~~~~~~lhvDaA~g~~~~~~~-~~~---~~~~gi~--~aD---si~~~~hK~l~~-p  314 (481)
T 4e1o_A          248 TLGTTGVCAFDC---LSELGPICAREGLWLHIDAAYAGTAFLCP-EFR---GFLKGIE--YAD---SFTFNPSKWMMV-H  314 (481)
T ss_dssp             EBSCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTGGGGGGSG-GGG---GGGTTGG--GCS---EEEECHHHHSSC-C
T ss_pred             ecCCCCCcCcCC---HHHHHHHHHHcCCeEEeehhhHHHHHhCh-hhH---HHhcCcc--cCC---EEEEChHHhcCC-C
Confidence            999999999866   99999999999999999999987644221 111   1111110  123   446789998843 3


Q ss_pred             CCeeEEEEEecCCHHHHHHHHHhhhcc--------------------ccCChHHHHHHHHHcCCCCCCChhHHHHHHHHH
Q 009517          357 GKRGGYMEVTGFSAEVREQIYKVASVN--------------------LCSNISGQILASLVMSPPKVGDESYESYCAERD  416 (533)
Q Consensus       357 G~riG~v~~~~~~~~~~~~l~~~~~~~--------------------~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~  416 (533)
                       ..+|++++  .+++.+.........+                    .....+.+.++...+            -.+.++
T Consensus       315 -~g~g~l~~--~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~------------g~~g~~  379 (481)
T 4e1o_A          315 -FDCTGFWV--KDKYKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSF------------GVKNLQ  379 (481)
T ss_dssp             -SSCEEEEE--SBHHHHHTTTCCCCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHH------------HHHHHH
T ss_pred             -CceEEEEE--eCHHHHHHHhcCCchhccCcccCCCCCcccccccCCCCccHHHHHHHHHHh------------HHHHHH
Confidence             45677666  3555432211100000                    001233344444333            124467


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCC
Q 009517          417 GILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQV  496 (533)
Q Consensus       417 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~  496 (533)
                      ++.++..++++++.+.|+++||+++..+....++++++.....           ....+..++.++..+.+.|+..    
T Consensus       380 ~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~-----------~~~~l~~~L~~~g~~~~~~~~~----  444 (481)
T 4e1o_A          380 AHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGLVVFRLKGPNS-----------LTENVLKEIAKAGRLFLIPATI----  444 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCTTEECCSCCCSSEEEEEESSCHH-----------HHHHHHHHHHHHCSSBCEEEEE----
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEEeCCchH-----------HHHHHHHHHHhCCeEEEEeeEE----
Confidence            7788889999999999999999998765554455555542211           1234445555443355665433    


Q ss_pred             CCCceEEEEec---CCcCcHHHHHHHHHHHHHHHH
Q 009517          497 PGTWHFRCTIL---PQEDKIPAIVTRLTDFHKNFM  528 (533)
Q Consensus       497 ~g~~~iRis~~---~~~e~i~~~~~~l~~~l~~~~  528 (533)
                      .|..++|+++.   .++++|++++++|+++++++.
T Consensus       445 ~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~l~  479 (481)
T 4e1o_A          445 QDKLIIRFTVTSQFTTRDDILRDWNLIRDAATLIL  479 (481)
T ss_dssp             TTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            23458999975   467899999999999988765

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=99.92  E-value=2.4e-24  Score=224.57  Aligned_cols=287  Identities=11%  Similarity=0.048  Sum_probs=190.0

Q ss_pred             cCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEE
Q 009517          163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPY  242 (533)
Q Consensus       163 Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v  242 (533)
                      |.+.....++++.+++ ++      .+ +++++|+|+++++..++++++ ++||+|+++.|+|..+...+...|++++.+
T Consensus        53 ~~~~~~~~~~~~~la~-~g------~~-~~v~~~~G~t~a~~~~~~a~~-~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v  123 (446)
T 2x3l_A           53 HHPEEVILKSMKQVEK-HS------DY-DGYFLVNGTTSGILSVIQSFS-QKKGDILMARNVHKSVLHALDISQQEGHFI  123 (446)
T ss_dssp             TSCSSHHHHHHHHHCS-CT------TE-EEEEESSHHHHHHHHHHHTTT-TSSSCEEECTTCCHHHHHHHHHHTCCEEEC
T ss_pred             cCcchHHHHHHHHHHh-cC------CC-ceEEEeCCHHHHHHHHHHHhc-CCCCEEEEecCccHHHHHHHHHcCCeEEEE
Confidence            3444556777777777 53      22 689999999999999999998 799999999999999999999999999999


Q ss_pred             ecCCCCC----CCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEcccccc-ccc
Q 009517          243 YLDEATG----WGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE-NVY  317 (533)
Q Consensus       243 ~~~~~~~----~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~-~~~  317 (533)
                      +...+++    +.+|++.|   +.+      ++++|++++ +|+||.+++   +++|+++|++||+++|+||+|.. +.|
T Consensus       124 ~~~~~~~~~~~~~~d~~~l---~~~------~~~~v~~~~-~n~~G~~~~---l~~I~~l~~~~~~~livDea~~~~~~f  190 (446)
T 2x3l_A          124 ETHQSPLTNHYNKVNLSRL---NND------GHKLVVLTY-PNYYGETFN---VEEVIKSLHQLNIPVLIDEAHGAHFGL  190 (446)
T ss_dssp             EEEECTTTSSEEEEEC----------------CCEEEEES-SCTTSCCCC---HHHHHHHHHHTTCCEEEECTTCTTTTS
T ss_pred             eCeeccccCcCCCCCHHHH---cCC------CceEEEEEC-CCCCeEecC---HHHHHHHHHhcCCeEEEcchhhhhhcc
Confidence            8832223    46788877   333      789999999 566999998   88999999999999999999986 445


Q ss_pred             cCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHH--HHHHhhh--ccccCChHHHHH
Q 009517          318 VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVRE--QIYKVAS--VNLCSNISGQIL  393 (533)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~--~l~~~~~--~~~~~~~~~q~a  393 (533)
                      .+. + .+...    +   ..|   +++.|+||+++|+  .++||+++   ++++++  .+.....  .+.+++....++
T Consensus       191 ~~~-~-~~~~~----~---g~D---i~~~S~~K~l~~~--~g~g~l~~---~~~~i~~~~~~~~~~~~~~~s~~~~~~aa  253 (446)
T 2x3l_A          191 QGF-P-DSTLN----Y---QAD---YVVQSFHKTLPAL--TMGSVLYI---HKNAPYRENIIEYLSYFQTSSPSYLIMAS  253 (446)
T ss_dssp             TTS-C-CCGGG----G---TCS---EEEECHHHHSSSC--TTCEEEEE---ETTCTTHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred             CCC-C-CChHH----c---CCC---EEEECCccccccc--cccEEEEE---cCCcCCHHHHHHHHHHHcCCCchHHHHHH
Confidence            443 2 22222    2   244   7899999976443  45799998   554433  3322211  223344444333


Q ss_pred             HHHHcCCCCCCChhHHHHHHH--HHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCC
Q 009517          394 ASLVMSPPKVGDESYESYCAE--RDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVP  471 (533)
Q Consensus       394 ~~~~L~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~  471 (533)
                      +..+++           +.+.  .+.+.++.+++++.+++.     |+.+..+..+.++|+.++   +         . +
T Consensus       254 l~~a~~-----------~l~~~g~~~~~~~~~~l~~~l~~~-----g~~~~~~~~~~~l~i~~~---~---------~-~  304 (446)
T 2x3l_A          254 LESAAQ-----------FYKTYDSTLFFAKRAQLIECLENK-----GFEMLQVDDPLKLLIKYE---G---------F-T  304 (446)
T ss_dssp             HHHHHH-----------HHHHCCCHHHHHHHHHHHHHHHHH-----TCEEEECSSTTEEEEECT---T---------S-C
T ss_pred             HHHHHH-----------HHHHhCHHHHHHHHHHHHHHHHHc-----CCEECcCCCCeEEEEEeC---C---------c-C
Confidence            333321           1111  111344444444555444     777776665556776553   1         1 2


Q ss_pred             hHHHHHHHHHccceEEE-cCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 009517          472 DAFYCRRLLNATGIVLV-PGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       472 ~~~~~~~ll~~~gV~v~-pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~~  527 (533)
                      ...+.. .|.++||.+. +|.        +++|++++  .+++++ +++++|+++++.+
T Consensus       305 ~~~l~~-~L~~~GI~v~~~g~--------~~iRi~~~~~~t~e~i-~l~~aL~~~~~~~  353 (446)
T 2x3l_A          305 GHDIQN-WFMNAHIYLELADD--------YQALAILPLWHHDDTY-LFDSLLRKIEDMI  353 (446)
T ss_dssp             HHHHHH-HHHHTTEEESEECS--------SCEEEECCCCCTTCCC-CHHHHHHHHHTCC
T ss_pred             HHHHHH-HHHHCCCEEEecCC--------CEEEEEeecCCCHHHH-HHHHHHHHHHHhh
Confidence            334444 4555699997 432        38999997  588899 9999999887543

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=99.92  E-value=4.8e-23  Score=211.32  Aligned_cols=284  Identities=14%  Similarity=0.072  Sum_probs=195.3

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHH-----HHhCCeEEEEe
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI-----ALHGGTLVPYY  243 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~-----~~~g~~~~~v~  243 (533)
                      ..+|++.++++.+        .+.+++++++++|+..+ ..++ ++||+|+++.|+|++....+     ...|.+++.++
T Consensus        69 ~~~l~~~la~l~g--------~~~~~~~~sG~~Ai~~~-~~l~-~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~  138 (400)
T 3nmy_A           69 RFAYERCVAALEG--------GTRAFAFASGMAATSTV-MELL-DAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVD  138 (400)
T ss_dssp             HHHHHHHHHHHHT--------CSEEEEESSHHHHHHHH-HTTS-CTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEEC
T ss_pred             HHHHHHHHHHHhC--------CCCEEEecCHHHHHHHH-HHHc-CCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEEC
Confidence            5678888887764        23677778889999984 5566 79999999999999655443     34699999888


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCc
Q 009517          244 LDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKF  323 (533)
Q Consensus       244 ~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~  323 (533)
                      .+       |++++++++++      ++++|++++|+||||.+++   +++|+++|++||+++|+||+|....+..  + 
T Consensus       139 ~~-------d~~~l~~~i~~------~~~~v~~e~~~np~G~~~~---l~~i~~la~~~g~~livDe~~~~~~~~~--~-  199 (400)
T 3nmy_A          139 LT-------DPAAFKAAIRA------DTKMVWIETPTNPMLKLVD---IAAIAVIARKHGLLTVVDNTFASPMLQR--P-  199 (400)
T ss_dssp             TT-------SHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHCC--G-
T ss_pred             CC-------CHHHHHHHhcc------CCCEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCcccccCC--h-
Confidence            64       79999999976      7999999999999999998   9999999999999999999997543321  1 


Q ss_pred             ccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEE-EEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCC
Q 009517          324 HSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGY-MEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPP  401 (533)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~-v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~  401 (533)
                           +  .+   ..+   +++.|+||.+ +.+|.++|+ +++ ..++++++.+..... .+.+.+++.++++...++  
T Consensus       200 -----~--~~---g~d---iv~~S~sK~l-~g~g~~~gG~~vv-~~~~~~~~~l~~~~~~~g~~~~~~~a~~~l~~l~--  262 (400)
T 3nmy_A          200 -----L--SL---GAD---LVVHSATKYL-NGHSDMVGGIAVV-GDNAELAEQMAFLQNSIGGVQGPFDSFLALRGLK--  262 (400)
T ss_dssp             -----G--GG---TCS---EEEEETTTTT-TCSSSCCCEEEEE-CSCHHHHHHHHHHHHHHCCBCCHHHHHHHHHHHT--
T ss_pred             -----h--hc---CCc---EEEecCcccc-CCCCCcceeEEEE-eCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhHh--
Confidence                 0  11   234   7899999999 447777766 332 247888888877654 556677777777666653  


Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEe-c-----------------CCceeEEecccCCCHHHHHH
Q 009517          402 KVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCN-K-----------------AEGAMYLFPRIQLPEKAIKA  463 (533)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~-----------------~~gg~~~~~~~~~~~~~~~~  463 (533)
                                  .+....++..++.+.+.+.|++.|.+..+ .                 ..|+ .+++.++....    
T Consensus       263 ------------~l~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~-~~~~~l~~~~~----  325 (400)
T 3nmy_A          263 ------------TLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGG-IVSIVLKGGFD----  325 (400)
T ss_dssp             ------------THHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCS-EEEEEETTHHH----
T ss_pred             ------------HHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCc-eEEEEeCCcHH----
Confidence                        13344556677788888999888776543 1                 2234 45544431100    


Q ss_pred             HHhcCCCChHHHHHHHHHccceEEEcCCCCCC--------------------CCCCceEEEEecCCcCcHHHHHHHHHHH
Q 009517          464 AEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ--------------------VPGTWHFRCTILPQEDKIPAIVTRLTDF  523 (533)
Q Consensus       464 ~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~--------------------~~g~~~iRis~~~~~e~i~~~~~~l~~~  523 (533)
                             ....++ ..++-.++.+..|..+..                    .-..+.+|||+++  |+.+.+++.|+++
T Consensus       326 -------~~~~~~-~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGl--e~~~dli~dl~~a  395 (400)
T 3nmy_A          326 -------AAKRFC-EKTELFTLAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGI--EDLGDLRGDLERA  395 (400)
T ss_dssp             -------HHHHHH-HHCSSSEECSCCCSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCS--SCHHHHHHHHHHH
T ss_pred             -------HHHHHH-HcCCcceEecCCCCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCc--CCHHHHHHHHHHH
Confidence                   012222 333434545555543320                    0123589999985  4567788888888


Q ss_pred             HH
Q 009517          524 HK  525 (533)
Q Consensus       524 l~  525 (533)
                      ++
T Consensus       396 l~  397 (400)
T 3nmy_A          396 LV  397 (400)
T ss_dssp             HC
T ss_pred             Hh
Confidence            76

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=99.92  E-value=7.9e-23  Score=216.31  Aligned_cols=340  Identities=11%  Similarity=0.111  Sum_probs=226.9

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHh----cc----
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL----IR----  212 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l----~~----  212 (533)
                      ++.+++++.....+.   ....|....+..++.+++.+++.+.+|.+ ..+.+++|+|+++|+..++.++    +.    
T Consensus       113 ~~~v~~~~~~~~~n~---~~~~~~~~~~~~~le~~~~~~la~~~g~~-~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~  188 (497)
T 2qma_A          113 MPAVAAEAMIAALNQ---SMDSWDQASSATYVEQKVVNWLCDKYDLS-EKADGIFTSGGTQSNQMGLMLARDWIADKLSG  188 (497)
T ss_dssp             HHHHHHHHHHHHHCC---CTTCGGGCHHHHHHHHHHHHHHHHHTTCC-TTCEEEEESSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhhcc---cccchhhChHHHHHHHHHHHHHHHHhCCC-CCCCeEEcCCchHHHHHHHHHHHHHHHHhhcc
Confidence            677777776655442   24456655567888999888888888854 2378999999999999998874    20    


Q ss_pred             ----CC------CC-eEEEcCCcCcchHHHHHHhCC---eEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeC
Q 009517          213 ----SE------ND-GILCPIPQYPLYSASIALHGG---TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVIN  278 (533)
Q Consensus       213 ----~~------gd-~Vlv~~p~~~~~~~~~~~~g~---~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~  278 (533)
                          .+      |+ .|+++.+.|..+...+...|.   +++.+|+++  ++.+|+++|+++|++....+.++.+|++++
T Consensus       189 ~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~  266 (497)
T 2qma_A          189 HSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDANA--DGTMDITKLDEVIAQAKAEGLIPFAIVGTA  266 (497)
T ss_dssp             CCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCT--TSSBCGGGHHHHHHHHHHTTCEEEEEEEEB
T ss_pred             cchhhcccccccCCeEEEECCCchHHHHHHHHHcCCCcccEEEEecCC--CCcCCHHHHHHHHHHHHHCCCcceEEEEcC
Confidence                02      45 799999999999999998876   789999864  578999999999987543333355888889


Q ss_pred             CCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCC
Q 009517          279 PGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGK  358 (533)
Q Consensus       279 p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~  358 (533)
                      ++||||.+.+   +++|+++|++||+++++|++|.++.+...  +.   .....+.  ..|   +++.|++|.+ +. ++
T Consensus       267 ~~~~tG~~~~---l~~I~~l~~~~~~~l~vD~a~~~~~~~~~--~~---~~~~gi~--~~D---~i~~s~hK~l-~~-p~  331 (497)
T 2qma_A          267 GTTDHGAIDD---LDFIADMAVKHDMWMHVDGAYGGALILSS--HK---SRLKGVE--RAH---SISVDFHKLF-YQ-TI  331 (497)
T ss_dssp             SCTTTCCBCC---HHHHHHHHHHHTCEEEEEETTGGGGGGST--TG---GGGTTGG--GCS---EEEEETTTTT-CC-CS
T ss_pred             CCCCCCCCCC---HHHHHHHHHHcCCEEEEehhhhHHHHhCc--ch---HhhcCcc--cCC---EEEEcchhcc-CC-Cc
Confidence            9999999877   99999999999999999999998765322  11   1111210  234   5677899988 43 47


Q ss_pred             eeEEEEEecCCHHHHHHHHHhhh-ccc----cCC-------------hHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHH
Q 009517          359 RGGYMEVTGFSAEVREQIYKVAS-VNL----CSN-------------ISGQILASLVMSPPKVGDESYESYCAERDGILS  420 (533)
Q Consensus       359 riG~v~~~~~~~~~~~~l~~~~~-~~~----~~~-------------~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~  420 (533)
                      ++|++++  .++..++.+..... ...    .++             .+.+.++...+.            .+.++.+.+
T Consensus       332 ~~G~l~~--~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg------------~~g~~~~~~  397 (497)
T 2qma_A          332 SCGALLV--NDKSNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVG------------PKALGDMYD  397 (497)
T ss_dssp             SCEEEEE--SCGGGGGGGCC--------------------CCSCCCTHHHHHHHHHHTC------------HHHHHHHHH
T ss_pred             ceEEEEE--eCHHHHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhC------------HHHHHHHHH
Confidence            9999987  24443332211000 000    011             122223333331            133566777


Q ss_pred             HHHHHHHHHHHHHhcCCCceEe-cCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCC
Q 009517          421 SLARRAKTLEDAFNSLEGITCN-KAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGT  499 (533)
Q Consensus       421 ~~~~~~~~l~~~L~~~~g~~~~-~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~  499 (533)
                      +..++++++.+.|+++++++++ +++++++.| ++.......+.       ....+ ...+.+.|+.+.++..+.   +.
T Consensus       398 ~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f-~~~~~~~~~~~-------l~~~l-~~~l~~~G~~~~~~~~~~---g~  465 (497)
T 2qma_A          398 HLLAQTLEVADMIRTNDQFELLAEPSLSTVLF-RATHETADLDE-------LNKAL-RLEALTRGIAVLGETIVD---GK  465 (497)
T ss_dssp             HHHHHHHHHHHHHHTCTTEEECSCCSSSEEEE-EECCSSSCHHH-------HHHHH-HHHHHHHTSCBCEEEEET---TE
T ss_pred             HHHHHHHHHHHHHhhCCCeEEEcCCCceEEEE-EEcCCccCHHH-------HHHHH-HHHHHhCCCEEEEeeEEC---CE
Confidence            8888999999999998898875 566665544 33311000000       01122 244556798887654432   34


Q ss_pred             ceEEEEe-c--CCcCcHHHHHHHHHHHHHHH
Q 009517          500 WHFRCTI-L--PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       500 ~~iRis~-~--~~~e~i~~~~~~l~~~l~~~  527 (533)
                      +++||++ .  .++++|++++++|+++++++
T Consensus       466 ~~lRis~~~~~~t~edi~~~~~~l~~~~~~~  496 (497)
T 2qma_A          466 TALKFTILNPCLTTSDFESLLSKINMLAVEL  496 (497)
T ss_dssp             EEEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence            4899998 3  78899999999999887653

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=99.91  E-value=1.4e-23  Score=216.25  Aligned_cols=213  Identities=16%  Similarity=0.117  Sum_probs=159.7

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHH----HHhCCeEEEEec
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI----ALHGGTLVPYYL  244 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~----~~~g~~~~~v~~  244 (533)
                      ..+|++.+|++++        .+++++++|+++|+..+++.++ ++||+|+++.|.|.+....+    +..|+++..++.
T Consensus        84 ~~~le~~lA~l~g--------~~~~i~~ssGt~Ai~~al~~l~-~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~~  154 (415)
T 2fq6_A           84 HFSLQQAMCELEG--------GAGCVLFPCGAAAVANSILAFI-EQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDP  154 (415)
T ss_dssp             HHHHHHHHHHHHT--------CSEEEEESSHHHHHHHHHHTTC-CTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECT
T ss_pred             HHHHHHHHHHHhC--------CCeEEEeCCHHHHHHHHHHHHh-CCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEECC
Confidence            6778999988874        2457778899999999999888 79999999999999877554    346999988864


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHH--cCCEEEEccccccccccCCCC
Q 009517          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK--EGLVLLADEVYQENVYVPEKK  322 (533)
Q Consensus       245 ~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~--~~~~lI~De~y~~~~~~~~~~  322 (533)
                      +       |+++++++|++      ++++|++++|+||||.+++   +++|+++|++  +|+++|+|++|....+ . .+
T Consensus       155 ~-------d~~~le~ai~~------~tklV~~e~~~NptG~v~d---l~~I~~la~~~~~g~~livD~a~a~~~~-~-~p  216 (415)
T 2fq6_A          155 L-------IGADIVKHLQP------NTKIVFLESPGSITMEVHD---VPAIVAAVRSVVPDAIIMIDNTWAAGVL-F-KA  216 (415)
T ss_dssp             T-------CGGGGGGGCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCTTCEEEEECTTTTTTS-S-CG
T ss_pred             C-------CHHHHHHhhcc------CCcEEEEECCCCCCCEeec---HHHHHHHHHhhcCCCEEEEECCCccccc-C-Cc
Confidence            3       78899998876      7999999999999999998   8999999999  9999999999986432 1 11


Q ss_pred             cccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCe-eEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCC
Q 009517          323 FHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKR-GGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSP  400 (533)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~r-iG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~  400 (533)
                         +     ++   ..|   +++.|++|.+ |.+|.+ +||+++   ++++++.+..... .....++..++++...+  
T Consensus       217 ---~-----~~---g~D---iv~~S~sK~l-g~~g~~~~G~l~~---~~~~~~~l~~~~~~~G~~~~~~~a~~~~~~l--  276 (415)
T 2fq6_A          217 ---L-----DF---GID---VSIQAATKYL-VGHSDAMIGTAVC---NARCWEQLRENAYLMGQMVDADTAYITSRGL--  276 (415)
T ss_dssp             ---G-----GG---TCS---EEEEETTTTT-TCSSSCCCEEEEE---CTTTHHHHHHHHHHTTCCCCHHHHHHHHHHH--
T ss_pred             ---c-----cc---CCe---EEEEeCcccc-CCCCCceEEEEEe---CHHHHHHHHHHHHhcCCCCCHHHHHHHHhhh--
Confidence               1     11   234   7899999999 667755 699887   6677777766544 23334455444433333  


Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Q 009517          401 PKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGIT  440 (533)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~  440 (533)
                                  +.+....++..++...+.+.|.+.|.+.
T Consensus       277 ------------~~l~~r~~~~~~n~~~l~~~L~~~~~v~  304 (415)
T 2fq6_A          277 ------------RTLGVRLRQHHESSLKVAEWLAEHPQVA  304 (415)
T ss_dssp             ------------HHHHHHHHHHHHHHHHHHHHHHTCTTEE
T ss_pred             ------------hHHHHHHHHHHHHHHHHHHHHHcCCCee
Confidence                        3334455556677778888888765543

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=99.91  E-value=2.4e-23  Score=217.84  Aligned_cols=306  Identities=11%  Similarity=0.078  Sum_probs=205.7

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH-HHHHHHHHHhccC--CCCeEEEcCCcCcchHHHHHHhCCeEEEEecC
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGAS-PAVHMMMQLLIRS--ENDGILCPIPQYPLYSASIALHGGTLVPYYLD  245 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~-~al~~~~~~l~~~--~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~  245 (533)
                      ..++.+++.+++.+.+|.+  ++ +++|+|++ .++..++..+. .  +++.|+++++.|..+...++..|++++.+++.
T Consensus       131 ~~~~~~~~~~~la~~~g~~--~~-~~~t~g~te~a~~~al~~~~-~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~  206 (456)
T 2z67_A          131 MYALTNKILESFFKQLGLN--VH-AIATPISTGMSISLCLSAAR-KKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETV  206 (456)
T ss_dssp             HHHHHHHHHHHHHHHTTCC--CE-EEEESSCHHHHHHHHHHHHH-HHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCE
T ss_pred             HHHHHHHHHHHHHHHcCCC--CC-EEEeCcHHHHHHHHHHHHHH-HhcCCCEEEEECCCcHHHHHHHHHcCCCceEEEEe
Confidence            5567777777777777743  44 99999999 46655666554 3  67789999999999999999999999998874


Q ss_pred             C-CCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcc
Q 009517          246 E-ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (533)
Q Consensus       246 ~-~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~  324 (533)
                      + +.++.+|+++|+++|++.... .++.+|++++|+||||.+.+   +++|+++|+++|+++++|++|..+.++ .   .
T Consensus       207 ~~~~~~~~d~~~l~~~i~~~~~~-~~~~~vv~~~~nn~tG~i~~---l~~I~~la~~~g~~v~vD~A~~~~~~g-~---~  278 (456)
T 2z67_A          207 LDGDRVYVPVEDIENAIKKEIEL-GNRPCVLSTLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQNNY-Y---L  278 (456)
T ss_dssp             EETTEEECCHHHHHHHHHHHHHT-TCCEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHH-H---H
T ss_pred             ccCCCCCcCHHHHHHHHHHHhhC-CCeEEEEEeCCCCCCCCcCC---HHHHHHHHHHcCCcEEEECcchHHHHH-h---h
Confidence            2 246789999999999321111 16778888999999999987   899999999999999999999875541 1   1


Q ss_pred             cHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhcc-ccCChHHHHHHHHHcCCCCC
Q 009517          325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVN-LCSNISGQILASLVMSPPKV  403 (533)
Q Consensus       325 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~~-~~~~~~~q~a~~~~L~~~~~  403 (533)
                      +  .....+.+ ..|   +++.|++|.+.  +++++||+++  .++++++.+....... ...+.+.+.++...+     
T Consensus       279 ~--~~~~~~~~-~~D---~~~~s~hK~~~--~p~g~G~l~~--~~~~~~~~l~~~~~g~~~~~~~~~~~aal~~l-----  343 (456)
T 2z67_A          279 E--KLKKAFKY-RVD---AVVSSSDKNLL--TPIGGGLVYS--TDAEFIKEISLSYPGRASATPVVNTLVSLLSM-----  343 (456)
T ss_dssp             H--HHHHHHTS-CCS---EEEEEHHHHHC--CCSSCEEEEE--SCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHH-----
T ss_pred             H--HHHHhhCC-CCC---EEEEcCCCCcC--CCCCeEEEEE--cCHHHHhhcCcCCCCCCCCCHHHHHHHHHHHH-----
Confidence            1  11111211 134   56789999753  4689999997  3577777764432211 112233333333332     


Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHH
Q 009517          404 GDESYESYCAERDGILSSLARRAKTLEDAFNSLE---GITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLL  480 (533)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll  480 (533)
                             -.+.++++.+++.++++++.+.|++++   |+.+..++ +++ ++++..+.            ....+... |
T Consensus       344 -------~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~~~-~~v-~~~~~~~~------------~~~~l~~~-L  401 (456)
T 2z67_A          344 -------GSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVE-SPI-ASCISVNS------------DPVEIAAK-L  401 (456)
T ss_dssp             -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCC-CSS-EEEEECSS------------CHHHHHHH-H
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCEecCCC-CeE-EEEEeccc------------HHHHHHHH-H
Confidence                   123456778888999999999998875   77777777 443 33442111            01233334 4


Q ss_pred             Hccce---EEE------cCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHH
Q 009517          481 NATGI---VLV------PGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       481 ~~~gV---~v~------pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l  524 (533)
                      .++||   -+.      +|..|... ..+++|+|++  .++++|++++++|++++
T Consensus       402 ~~~gi~~~rv~~~~g~f~G~~~~~~-~~~~vr~s~~~~~t~eeid~~l~~L~~~~  455 (456)
T 2z67_A          402 YNLRVTGPRGIKKTDHFGNCYLGTY-THDYIVMNAAIGVRTEDIVNSVSKLEKIL  455 (456)
T ss_dssp             HHTTEESCEEECTTCHHHHTCSSCC-SCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred             HHcCCCcceEEeecCcccccccccc-CcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence            45664   444      24444321 2349999997  78999999999998764

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=99.91  E-value=6e-22  Score=207.98  Aligned_cols=324  Identities=11%  Similarity=0.013  Sum_probs=221.7

Q ss_pred             ccccCCCcccHHHHHHHHHHHHhhcCCCCCC-------CCEEEcCChHHHHHHHHHHhccC------------------C
Q 009517          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADP-------NDIFLTDGASPAVHMMMQLLIRS------------------E  214 (533)
Q Consensus       160 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~-------~~i~~t~G~~~al~~~~~~l~~~------------------~  214 (533)
                      ...|....+..+|++++++++.+.+|.+...       ...++|+|+++++..++.+++..                  +
T Consensus       102 ~~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~  181 (475)
T 3k40_A          102 GFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILG  181 (475)
T ss_dssp             SSSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHH
T ss_pred             ccCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccC
Confidence            4568778889999999999999998865321       36899999999999888876310                  2


Q ss_pred             CCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHH
Q 009517          215 NDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRA  294 (533)
Q Consensus       215 gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~  294 (533)
                      ++.|+++.++|..+...+...|++++.+|+++  ++ +|+++|+++|++....+..+.+|+++.++|+||.+-+   +++
T Consensus       182 ~~~vi~s~~~H~s~~~~~~~~g~~~~~v~~d~--~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~---l~~  255 (475)
T 3k40_A          182 KLVGYCSDQAHSSVERAGLLGGVKLRSVQSEN--HR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDY---LDE  255 (475)
T ss_dssp             HEEEEEETTSCHHHHHHHHHHTCEEEEECCBT--TB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHH
T ss_pred             CeEEEECCCchHHHHHHHHHcCCceEEEECCC--CC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCC---HHH
Confidence            36799999999999999999999999999874  45 9999999999986555555788888999999999976   999


Q ss_pred             HHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHH-
Q 009517          295 IVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVR-  373 (533)
Q Consensus       295 i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~-  373 (533)
                      |+++|++||+++++|++|.+..+... ...   .....+.  ..|   .+..+++|++++  ...+|++++  .+++.+ 
T Consensus       256 I~~la~~~~~~lhvD~A~~~~~~~~~-~~~---~~~~gi~--~~D---s~~~~~hK~l~~--p~g~g~l~~--~~~~~l~  322 (475)
T 3k40_A          256 CGPVGNKHNLWIHVDAAYAGSAFICP-EYR---HLMKGIE--SAD---SFNFNPHKWMLV--NFDCSAMWL--KDPSWVV  322 (475)
T ss_dssp             HHHHHHHTTCEEEEECTTGGGGGGSG-GGG---GGGTTGG--GCS---EEEECHHHHSSC--CSSCEEEEE--SSGGGC-
T ss_pred             HHHHHHHhCCeEEEeHHhHHHHHhCH-hhH---HHhcCcc--cCC---EEEECchhccCC--CCceEEEEE--eCHHHHH
Confidence            99999999999999999987543221 111   1111110  123   557889998843  355777776  244332 


Q ss_pred             HHHHHh---h-hc-----------cc-cC---ChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009517          374 EQIYKV---A-SV-----------NL-CS---NISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFN  434 (533)
Q Consensus       374 ~~l~~~---~-~~-----------~~-~~---~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  434 (533)
                      +.+...   . ..           +. ++   ..+.+.++...+            -.+.++++.++..++++++.+.|+
T Consensus       323 ~~~~~~~~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~------------g~~g~~~~~~~~~~~a~~l~~~L~  390 (475)
T 3k40_A          323 NAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLY------------GVENLQAHIRRHCNFAKQFGDLCV  390 (475)
T ss_dssp             --------------------------CCCGGGTHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCccccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHH------------hHHHHHHHHHHHHHHHHHHHHHHh
Confidence            222110   0 00           00 00   122333333322            123457778888999999999999


Q ss_pred             cCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec---CCcC
Q 009517          435 SLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL---PQED  511 (533)
Q Consensus       435 ~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~---~~~e  511 (533)
                      ++||+.+..+.....+++++.....           ....+..++.++.++.+.|+..+    |..++|+++.   .+++
T Consensus       391 ~~~g~~l~~~~~~~iv~f~~~~~~~-----------~~~~l~~~L~~~g~~~~~~~~~~----g~~~lR~~~~~~~tt~~  455 (475)
T 3k40_A          391 ADSRFELAAEINMGLVCFRLKGSNE-----------RNEALLKRINGRGHIHLVPAKIK----DVYFLRMAICSRFTQSE  455 (475)
T ss_dssp             HSTTEEESSCCBTTEEEEEESSCHH-----------HHHHHHHHHHHHTSCBCEEEEET----TEEEEEEECCCTTCCHH
T ss_pred             cCCCEEEecCCceEEEEEEeCCchH-----------HHHHHHHHHHhCCcEEEEeeEEC----CEEEEEEEeCCCCCCHH
Confidence            9999998765444444444432111           12344555555544566665433    3458999985   4788


Q ss_pred             cHHHHHHHHHHHHHHHHH
Q 009517          512 KIPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       512 ~i~~~~~~l~~~l~~~~~  529 (533)
                      +|++++++|+++++++.+
T Consensus       456 di~~~~~~i~~~~~~~~~  473 (475)
T 3k40_A          456 DMEYSWKEVSAAADEMEQ  473 (475)
T ss_dssp             HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            999999999999988764

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=99.91  E-value=2.6e-22  Score=205.68  Aligned_cols=310  Identities=13%  Similarity=0.107  Sum_probs=209.1

Q ss_pred             CCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHh-------cc
Q 009517          140 FSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL-------IR  212 (533)
Q Consensus       140 ~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-------~~  212 (533)
                      +++++++++.+.+..      ..|.+..+..+++++++++++      .  ++++++++|++|+..+++.+       . 
T Consensus        13 ~~~~~~~a~~~~~~~------~~~~~~~~~~~l~~~la~~~~------~--~~~i~~~sGt~a~~~al~~~~~~~~~~~-   77 (390)
T 3b8x_A           13 WDDLEYKAIQSVLDS------KMFTMGEYVKQYETQFAKTFG------S--KYAVMVSSGSTANLLMIAALFFTKKPRL-   77 (390)
T ss_dssp             CCHHHHHHHHHHHHH------TCCSSCHHHHHHHHHHHHHHT------C--SEEEEESCHHHHHHHHHHHTTSSSSCSC-
T ss_pred             CCHHHHHHHHHHHHc------CCCCCChHHHHHHHHHHHHHC------C--CcEEEECCHHHHHHHHHHHHHhhhhcCC-
Confidence            388999999888875      135567778999999999985      2  25777777889999999998       5 


Q ss_pred             CCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHH
Q 009517          213 SENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQ  292 (533)
Q Consensus       213 ~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l  292 (533)
                      .+||+|+++.|+|+.+...+...|++++.++++++ ++.+|+++|++++++      ++++|+++|   ++|...+   +
T Consensus        78 ~~g~~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~~l~~~i~~------~~~~v~~~~---~~g~~~~---~  144 (390)
T 3b8x_A           78 KKGDEIIVPAVSWSTTYYPLQQYGLRVKFVDIDIN-TLNIDIESLKEAVTD------STKAILTVN---LLGNPNN---F  144 (390)
T ss_dssp             CTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTT-TCSBCHHHHHHHCCT------TEEEEEEEC---GGGCCCC---H
T ss_pred             CCcCEEEECCCCcHHHHHHHHHcCCEEEEEecCcc-ccCcCHHHHHHHhCc------CCeEEEEEC---CccChhh---H
Confidence            78999999999999999999999999999999864 578999999999976      799999875   4555545   9


Q ss_pred             HHHHHHHHHcCCEEEEcccccc-ccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHH
Q 009517          293 RAIVDFCKKEGLVLLADEVYQE-NVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAE  371 (533)
Q Consensus       293 ~~i~~l~~~~~~~lI~De~y~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~  371 (533)
                      ++|.++|+++|+++|+|++|.. ..+.+. .      +  ..   ..+.. .+....+|.+ + +| +.|++++  .+++
T Consensus       145 ~~i~~l~~~~~~~li~D~a~~~g~~~~~~-~------~--g~---~~~~~-~~s~~~~k~~-~-~g-~gG~~~~--~~~~  206 (390)
T 3b8x_A          145 DEINKIIGGRDIILLEDNCESMGATFNNK-C------A--GT---FGLMG-TFSSFYSNHI-A-TM-EGGCIVT--DDEE  206 (390)
T ss_dssp             HHHHHHHTTSCCEEEEECTTCTTCEETTE-E------T--TS---SSSEE-EEECCTTSSS-C-SS-SCEEEEE--SCHH
T ss_pred             HHHHHHHHHcCCEEEEECcCcccCEECCc-c------c--cc---ccceE-EEEccCCCCC-c-cC-CceEEEe--CCHH
Confidence            9999999999999999999984 333211 0      0  00   12311 1111234555 2 23 4589887  2346


Q ss_pred             HHHHHHHhhhcc------------------------------c--cCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHH
Q 009517          372 VREQIYKVASVN------------------------------L--CSNISGQILASLVMSPPKVGDESYESYCAERDGIL  419 (533)
Q Consensus       372 ~~~~l~~~~~~~------------------------------~--~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~  419 (533)
                      +.+.+.......                              +  ..+.+.++++...|              +.+++..
T Consensus       207 l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l--------------~~l~~~~  272 (390)
T 3b8x_A          207 IYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQL--------------KKLPRFI  272 (390)
T ss_dssp             HHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHH--------------HHHHHHH
T ss_pred             HHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHHH--------------HHHHHHH
Confidence            777666543210                              1  13344444443333              3455677


Q ss_pred             HHHHHHHHHHHHHHhcCCCceEecC--CceeE-EecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEc---CCCC
Q 009517          420 SSLARRAKTLEDAFNSLEGITCNKA--EGAMY-LFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVP---GSGF  493 (533)
Q Consensus       420 ~~~~~~~~~l~~~L~~~~g~~~~~~--~gg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~p---g~~f  493 (533)
                      ++.+++++++.+.|+++||+.+..+  ..+++ +++.++.+.         +. +...+ .+.|.++||.+.+   |..+
T Consensus       273 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~---------~~-~~~~l-~~~L~~~gI~v~~~~~~~~~  341 (390)
T 3b8x_A          273 SVRRKNAEYFLDKFKDHPYLDVQQETGESSWFGFSFIIKKDS---------GV-IRKQL-VENLNSAGIECRPIVTGNFL  341 (390)
T ss_dssp             HHHHHHHHHHHHHHTTCSSEEECCCCSBCCCCEEEEEECTTS---------CC-CHHHH-HHHHHHTTBCCBCSTTSSGG
T ss_pred             HHHHHHHHHHHHHhcCCCCcccCCCCCCcccEEEEEEecCcC---------cc-cHHHH-HHHHHHCCCCeeeecCCchh
Confidence            7778888999999998888877653  23332 333333110         01 12333 3556678999987   3221


Q ss_pred             CC-CC----C--------------CceEEEEec--CCcCcHHHHHHHH
Q 009517          494 GQ-VP----G--------------TWHFRCTIL--PQEDKIPAIVTRL  520 (533)
Q Consensus       494 ~~-~~----g--------------~~~iRis~~--~~~e~i~~~~~~l  520 (533)
                      .. +.    +              .+.|||++.  .++++++++++.|
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t~~di~~i~~~l  389 (390)
T 3b8x_A          342 KNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDEIDYLREVL  389 (390)
T ss_dssp             GCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred             hcchhhhcCCCCCcCCChHHHHHhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence            11 00    0              126999995  8888999888775

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=99.91  E-value=4.8e-22  Score=207.68  Aligned_cols=329  Identities=13%  Similarity=0.071  Sum_probs=204.1

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCC------CcccHHHHHHHHHHHHhhcCCCCCCCC---EEEcCChHHHHHHHHHHhc
Q 009517          141 SADSIERAWQILDQIPGRATGAYSH------SQGIKGLRDTIAAGIEARDGFPADPND---IFLTDGASPAVHMMMQLLI  211 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~------~~G~~~lr~aia~~~~~~~g~~~~~~~---i~~t~G~~~al~~~~~~l~  211 (533)
                      ++.|++++...+.+...   .+|+.      ..-..+|++...+++.+.+|  .+.+.   .+++++|++|+..++.+++
T Consensus        67 ~~~V~eA~~~~l~~~y~---~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g--~~~~~~~~~v~~~sGt~An~~al~al~  141 (490)
T 2a7v_A           67 SRAALEALGSCLNNKYS---EGYPGKRYYGGAEVVDEIELLCQRRALEAFD--LDPAQWGVNVQPYSGSPANLAVYTALL  141 (490)
T ss_dssp             CHHHHHHHTSGGGTCCC---CC------------CTHHHHHHHHHHHHHTT--CCTTTEEEECCCSSHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHcCCCc---cCCCcccccCccHHHHHHHHHHHHHHHHHcC--CCcccCceEEeCCchHHHHHHHHHHHc
Confidence            79999998887765321   22332      11134677555566666666  33432   3445678999999999998


Q ss_pred             cCCCCeEEEcCCcCcchHH--------HHHHhCCeE--EEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCC
Q 009517          212 RSENDGILCPIPQYPLYSA--------SIALHGGTL--VPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGN  281 (533)
Q Consensus       212 ~~~gd~Vlv~~p~~~~~~~--------~~~~~g~~~--~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~N  281 (533)
                       +|||+|+++++.|.++..        .+...|..+  ++++++++ ++.+|+++|+++++..     ++++|+++.++|
T Consensus       142 -~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~-~~~iD~d~le~~l~~~-----~~klIi~~~s~~  214 (490)
T 2a7v_A          142 -QPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPK-TGLIDYNQLALTARLF-----RPRLIIAGTSAY  214 (490)
T ss_dssp             -CSCEECCC-------------------------------CCBCTT-TCSBCHHHHHHHHHHH-----CCSEEEECCSSC
T ss_pred             -CCCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccc-cCCcCHHHHHHHHhhc-----CCcEEEEcCCCC
Confidence             899999999999876431        233456543  44444433 5789999999999865     688898888999


Q ss_pred             CCccCCCHHHHHHHHHHHHHcCCEEEEccccc-cccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCee
Q 009517          282 PTGQVLAEENQRAIVDFCKKEGLVLLADEVYQ-ENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRG  360 (533)
Q Consensus       282 PtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~ri  360 (533)
                      |+.  .+   +++|+++|++||+++++|+++. ++.+.|..+ .++    .     ..|   +++.|+||+| +  |.|.
T Consensus       215 ~~~--~d---l~~i~~ia~~~g~~livD~Ah~~glv~~g~~~-~~~----~-----~aD---iv~~S~hK~l-~--Gp~G  273 (490)
T 2a7v_A          215 ARL--ID---YARMREVCDEVKAHLLADMAHISGLVAAKVIP-SPF----K-----HAD---IVTTTTHKTL-R--GARS  273 (490)
T ss_dssp             CSC--CC---HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSC-CGG----G-----TCS---EEEEESSGGG-C--SCSC
T ss_pred             CCc--cc---HHHHHHHHHHcCCEEEEccccccccccCCcCC-CCC----C-----CCC---EEEECCcccC-c--cccc
Confidence            863  34   8999999999999999999964 555444211 111    1     134   7789999988 3  7888


Q ss_pred             EEEEEecCCH---------------HHHHHHHHhhh-cc-ccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHH
Q 009517          361 GYMEVTGFSA---------------EVREQIYKVAS-VN-LCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLA  423 (533)
Q Consensus       361 G~v~~~~~~~---------------~~~~~l~~~~~-~~-~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~  423 (533)
                      |++++   ++               ++.+.+.+... .. .+++....+++..++..         ...++.++..+++.
T Consensus       274 G~i~~---~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~---------~~~~~~~~~~~~~~  341 (490)
T 2a7v_A          274 GLIFY---RKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQ---------ACTPMFREYSLQVL  341 (490)
T ss_dssp             EEEEE---ECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHH---------HHSHHHHHHHHHHH
T ss_pred             hheee---ccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHH---------HhhhhHHHHHHHHH
Confidence            99998   33               35555655432 22 23444444443434320         01123355667788


Q ss_pred             HHHHHHHHHHhcCCCceEec-CCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCC--CCCCc
Q 009517          424 RRAKTLEDAFNSLEGITCNK-AEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ--VPGTW  500 (533)
Q Consensus       424 ~~~~~l~~~L~~~~g~~~~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~--~~g~~  500 (533)
                      +++++|.+.|.+. |+.++. +....++|+++...          +. +... +.+.|++.||.+..+..++.  +....
T Consensus       342 ~na~~L~~~L~~~-G~~v~~~~t~t~lv~vdl~~~----------g~-~~~~-~~~~L~~~GI~v~~~~~p~d~~p~~~~  408 (490)
T 2a7v_A          342 KNARAMADALLER-GYSLVSGGTDNHLVLVDLRPK----------GL-DGAR-AERVLELVSITANKNTCPGDRSAITPG  408 (490)
T ss_dssp             HHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECTTT----------TC-CHHH-HHHHHHHTTEECEEECCTTCCCSSSCS
T ss_pred             HHHHHHHHHHHHc-CcEEecCCCCCeEEEEEeCCC----------CC-CHHH-HHHHHHhCCeEEecCccCCCCCCCCCC
Confidence            8899999999998 998875 34456778766521          11 1222 45677889999986554442  11234


Q ss_pred             eEEEEec------CCcCcHHHHHHHHHHHHHHH
Q 009517          501 HFRCTIL------PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       501 ~iRis~~------~~~e~i~~~~~~l~~~l~~~  527 (533)
                      .|||+..      .++++++++++.|.++++..
T Consensus       409 ~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~~~  441 (490)
T 2a7v_A          409 GLRLGAPALTSRQFREDDFRRVVDFIDEGVNIG  441 (490)
T ss_dssp             EEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ceEecccccccCCCCHHHHHHHHHHHHHHHHhh
Confidence            7999772      57889999999999988743

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=99.91  E-value=2.8e-23  Score=216.25  Aligned_cols=293  Identities=16%  Similarity=0.149  Sum_probs=189.6

Q ss_pred             CcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHH----HhCCeEEE
Q 009517          166 SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA----LHGGTLVP  241 (533)
Q Consensus       166 ~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~----~~g~~~~~  241 (533)
                      ..|..++.+++.+.+.+.+|  .++++|++++|++.+++.+..++..++||+|+++.++|+.+...++    ..|++++.
T Consensus       103 ~~g~~~~~~~~~~~la~~~g--~~~~~i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~  180 (438)
T 1wyu_A          103 SQGVLQATFEYQTMIAELAG--LEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLT  180 (438)
T ss_dssp             CHHHHHHHHHHHHHHHHHHT--SSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEE
T ss_pred             hhhHHHHHHHHHHHHHHHhC--CCccceEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEE
Confidence            45666666666666666666  4567899999999444443333221589999999999999876654    47999999


Q ss_pred             EecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccc-cccccccCC
Q 009517          242 YYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEV-YQENVYVPE  320 (533)
Q Consensus       242 v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~-y~~~~~~~~  320 (533)
                      ++..   ++.+|+++    |++      ++++|++++| ||||.+.+   +++|+++|+++|+++|+|.. .+   ++. 
T Consensus       181 v~~~---~~~~d~~~----i~~------~t~~v~i~~p-n~tG~~~~---l~~i~~la~~~g~~vivd~d~~a---~g~-  239 (438)
T 1wyu_A          181 LPLE---GGRTPLPE----VGE------EVGAVVVQNP-NFLGALED---LGPFAEAAHGAGALFVAVADPLS---LGV-  239 (438)
T ss_dssp             ECCB---TTBCCCCC----CCT------TEEEEEEESS-CTTSBCCC---HHHHHHHHHHTTCEEEEECCTTG---GGT-
T ss_pred             EcCc---CCccCHHH----hCC------CeEEEEEECC-CCCeEEec---HHHHHHHHHHcCCEEEEEechhh---ccC-
Confidence            9872   34677766    433      7999999999 99999987   99999999999999995522 11   111 


Q ss_pred             CCcccHHHHHhhcCCCCCCceEEEEecCCccCC---CCCCCeeEEEEEecCCHHHHHHHHHh------------------
Q 009517          321 KKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYY---GECGKRGGYMEVTGFSAEVREQIYKV------------------  379 (533)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~---gl~G~riG~v~~~~~~~~~~~~l~~~------------------  379 (533)
                      ..  ....    +   ..|   +++.| +|.|+   ++.|.++||+++   ++++++.+...                  
T Consensus       240 ~~--~~~~----~---g~D---~~~~s-~kk~~~~~~~~Gp~~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~l  303 (438)
T 1wyu_A          240 LK--PPGA----Y---GAD---IAVGD-GQSLGLPMGFGGPHFGFLAT---KKAFVRQLPGRLVSETVDVEGRRGFILTL  303 (438)
T ss_dssp             BC--CHHH----H---TCS---EEEEE-CTTTTCCCGGGCSCCEEEEE---CGGGGGGCCSCCEEEEEBTTSCEEEEECC
T ss_pred             cC--CCcc----C---CCC---EEEEC-CcccCCCccCCCCCeeEEEE---cHHHHHhCCCceeccccccCCCcceeeec
Confidence            01  1111    2   234   44555 55541   355779999998   77766554210                  


Q ss_pred             ---------hhccccC---ChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCce
Q 009517          380 ---------ASVNLCS---NISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGA  447 (533)
Q Consensus       380 ---------~~~~~~~---~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg  447 (533)
                               ...+++.   +.+...++...+.       ..  -.+.++++.+++.++++++.+.|++++|+++..+. .
T Consensus       304 ~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~-------~~--~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~  373 (438)
T 1wyu_A          304 QAREQYIRRAKAKSNITTNAQLTALMGAMYLA-------AL--GPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPK-P  373 (438)
T ss_dssp             GGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHH-------HH--HHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCS-S
T ss_pred             cccccccchhcccCCccchHHHHHHHHHHHHH-------Hh--CHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCC-C
Confidence                     0112222   1222221221121       00  11235678888899999999999999899887664 3


Q ss_pred             eEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEE--EcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHH
Q 009517          448 MYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVL--VPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDF  523 (533)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v--~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~  523 (533)
                      +|.++.+..+.            +...++.++ .++||.+  .+|..|+    .+++|||+.  .+++++++++++|+++
T Consensus       374 ~~~~~~~~~~~------------~~~~~~~~L-~~~gi~v~~~~~~~~~----~~~lRis~~~~~t~edi~~~~~~l~~~  436 (438)
T 1wyu_A          374 FFNEFALALPK------------DPEAVRRAL-AERGFHGATPVPREYG----ENLALFAATELHEEEDLLALREALKEV  436 (438)
T ss_dssp             BCSEEEEECSS------------CHHHHHHHH-HHTTCCCCEECCTTSC----SSEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred             eEEEEEEeCCC------------CHHHHHHHH-HHCCceeccccccccC----CCeEEEEecccCCHHHHHHHHHHHHHH
Confidence            33332233221            234445554 4579999  7777664    238999997  7888999999999876


Q ss_pred             H
Q 009517          524 H  524 (533)
Q Consensus       524 l  524 (533)
                      +
T Consensus       437 l  437 (438)
T 1wyu_A          437 L  437 (438)
T ss_dssp             C
T ss_pred             h
Confidence            4

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=99.91  E-value=1e-23  Score=218.49  Aligned_cols=372  Identities=12%  Similarity=0.059  Sum_probs=235.0

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      ++.++++...++.||++      +||+..|....                      ..+++    ++++++++.+++.+.
T Consensus        49 ~i~~a~G~~l~D~dG~~------ylD~~~g~~~~----------------------~lGh~----~p~v~~Ai~~q~~~~   96 (456)
T 4atq_A           49 YVEDADGGIIRDVDGNS------FIDLGSGIAVT----------------------SVGAS----DPAVVAAVQEAAAHF   96 (456)
T ss_dssp             CEEEEETTEEEETTSCE------EEESSHHHHTC----------------------TTCTT----CHHHHHHHHHHHHHC
T ss_pred             eEEeeecCEEEeCCCCE------EEEccccHHHH----------------------hcCCC----CHHHHHHHHHHHhhc
Confidence            45667777777778877      77775553211                      11122    689999999999874


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCC-CCeEEEcCCcCcchHHHHHH
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSE-NDGILCPIPQYPLYSASIAL  234 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~-gd~Vlv~~p~~~~~~~~~~~  234 (533)
                      .. ....+.+.....+|-+.+++..-   +  -..+.++++++|+||++.+++..+... ..+|+....+|++....+..
T Consensus        97 ~~-~~~~~~~~~~~~~lae~L~~~~p---~--~~~~~v~f~~sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als  170 (456)
T 4atq_A           97 TH-TCFMVTPYEGYVAVTEQLNRLTP---G--DHAKRTVLFNSGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMA  170 (456)
T ss_dssp             SC-CTTTTSCCHHHHHHHHHHHHHSS---C--SSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHH
T ss_pred             cC-cccCccCcHHHHHHHHHHHHhCC---C--CCCcEEEEeCChHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccc
Confidence            32 11223333334455555544431   0  124579999999999999999875323 37899999999997654433


Q ss_pred             hC--------------CeEEEEecCCC----CCCCCCHHHHHHHHHHHH--hcCCCeeEEEEeCCCCCCcc-CCCHHHHH
Q 009517          235 HG--------------GTLVPYYLDEA----TGWGLETSEVKKQLEAAK--AKGITVRALVVINPGNPTGQ-VLAEENQR  293 (533)
Q Consensus       235 ~g--------------~~~~~v~~~~~----~~~~ld~~~l~~~i~~~~--~~g~~~~~iil~~p~NPtG~-~~s~~~l~  293 (533)
                      ..              ..+..+|....    ....-+.+.+++.++...  ..+.++.+||++..+.-.|. .++++.++
T Consensus       171 ~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~  250 (456)
T 4atq_A          171 LTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLP  250 (456)
T ss_dssp             HCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHH
T ss_pred             cccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhH
Confidence            21              12334443211    000123444444443321  12236888888876766776 56778899


Q ss_pred             HHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHH
Q 009517          294 AIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVR  373 (533)
Q Consensus       294 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~  373 (533)
                      +|.++|++||+++|+||++++|...|.  +..     .+..++.||     +.+|+|.++  .|+++|.+++   .++++
T Consensus       251 ~lr~lc~~~gillI~DEV~tG~GRtG~--~~a-----~e~~gv~PD-----ivt~gK~lg--gg~P~~av~~---~~~i~  313 (456)
T 4atq_A          251 ALSEWAKEKGIVFIADEVQSGFCRTGE--WFA-----VDHEGVVPD-----IITMAKGIA--GGLPLSAITG---RADLL  313 (456)
T ss_dssp             HHHHHHHHHTCEEEEECTTTTTTTTSS--SSG-----GGGTTCCCS-----EEEECGGGG--TTSSCEEEEE---EHHHH
T ss_pred             HHHHHHhhcCCceEecccccccCCccc--ccc-----ccccCCCCc-----hhhhhhccc--CcCCceeeEe---cHHHH
Confidence            999999999999999999999876664  332     222334788     667899994  5899999998   88988


Q ss_pred             HHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------CCceEec
Q 009517          374 EQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL---------EGITCNK  443 (533)
Q Consensus       374 ~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---------~g~~~~~  443 (533)
                      +.+..... .|++.++++++++.+.|+           ..+ .+.+.++.++..+++.+.|+++         +-+.-++
T Consensus       314 ~~~~~~~~~~Tf~gnpla~aaala~L~-----------~i~-~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VR  381 (456)
T 4atq_A          314 DAVHPGGLGGTYGGNPVACAAALAAID-----------TME-QHDLNGRARHIEELALGKLRELAAELSAGGGSVVGDIR  381 (456)
T ss_dssp             TTSCTTSSCCSSSSCHHHHHHHHHHHH-----------HHH-HTTHHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEE
T ss_pred             hcccccCCCCCCCCChHHHHhhHHHHH-----------HHh-hccHHHHHHHHHHHHHHHHHHHHHhcccccCCceEEee
Confidence            87765543 789999999999999884           111 1234445555555555555443         2244466


Q ss_pred             CCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHH
Q 009517          444 AEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLT  521 (533)
Q Consensus       444 ~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~  521 (533)
                      ..|.|+.+ .+..+...     .........++ ..+.++||++.++..++     +.|||++.  +++++|++++++|+
T Consensus       382 G~Gl~~gi-el~~~~~~-----~~~~~~~~~v~-~~~~~~Gvl~~~~g~~~-----~~irl~PpL~it~~~id~~l~~l~  449 (456)
T 4atq_A          382 GRGAMLAI-ELVQPGSK-----EPNAELTKAVA-AACLKEGVIILTCGTYG-----NVIRLLPPLVISDELLIDGLEVLA  449 (456)
T ss_dssp             EETTEEEE-EEBCTTSC-----CBCHHHHHHHH-HHHHHTTEECEEECTTS-----CEEEECCCTTCCHHHHHHHHHHHH
T ss_pred             ecceEEEE-EEecCCCC-----CcCHHHHHHHH-HHHHHCCCEEEecCCCC-----CEEEEECCCCCCHHHHHHHHHHHH
Confidence            77765543 33222100     00000012233 44556899998754333     28999985  79999999999999


Q ss_pred             HHHHH
Q 009517          522 DFHKN  526 (533)
Q Consensus       522 ~~l~~  526 (533)
                      ++++.
T Consensus       450 ~al~a  454 (456)
T 4atq_A          450 AAIKA  454 (456)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99875

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.91  E-value=3.1e-22  Score=207.12  Aligned_cols=227  Identities=15%  Similarity=0.073  Sum_probs=161.6

Q ss_pred             cccCCCc--ccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHH----HH
Q 009517          161 GAYSHSQ--GIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI----AL  234 (533)
Q Consensus       161 ~~Y~~~~--G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~----~~  234 (533)
                      +.|....  ...+|+++++++++.        +..++++++++|+..+++.++ .+||+|+++.++|+++...+    ..
T Consensus        50 ~~y~~~~~~~~~~l~~~la~~~g~--------~~~v~~~sGt~A~~~~l~~~~-~~gd~vi~~~~~~~~~~~~~~~~~~~  120 (421)
T 2ctz_A           50 NIYSRIMNPTVDVLEKRLAALEGG--------KAALATASGHAAQFLALTTLA-QAGDNIVSTPNLYGGTFNQFKVTLKR  120 (421)
T ss_dssp             GSCBTTBCHHHHHHHHHHHHHHTC--------SEEEEESSHHHHHHHHHHHHC-CTTCEEEECSCCCHHHHHHHHTHHHH
T ss_pred             CcccCCCChHHHHHHHHHHHHhCC--------CceEEecCHHHHHHHHHHHHh-CCCCEEEEeCCCchHHHHHHHHHHHH
Confidence            4455332  357899999998752        234555556999999999987 79999999999999887765    67


Q ss_pred             hCCeEEEE-ecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccc
Q 009517          235 HGGTLVPY-YLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQ  313 (533)
Q Consensus       235 ~g~~~~~v-~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~  313 (533)
                      .|++++.+ +.+       |+++++++|++      ++++|++++|+||||.+++   +++|+++|+++|+++|+|++|.
T Consensus       121 ~g~~~~~~~~~~-------d~~~l~~~i~~------~~~~v~~~~~~n~~G~~~~---l~~i~~~a~~~g~~livD~~~~  184 (421)
T 2ctz_A          121 LGIEVRFTSREE-------RPEEFLALTDE------KTRAWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFG  184 (421)
T ss_dssp             TTCEEEECCTTC-------CHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGG
T ss_pred             cCCEEEEECCCC-------CHHHHHHhhcc------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCcc
Confidence            89999888 643       79999999976      7999999999999999999   9999999999999999999994


Q ss_pred             cccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHH----HHHHHHh----------
Q 009517          314 ENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEV----REQIYKV----------  379 (533)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~----~~~l~~~----------  379 (533)
                      .+.+.+. +   +     .+   ..|   +++.|++|.+ +.+|.|+|++++...+.++    .+.+...          
T Consensus       185 ~~g~~~~-~---~-----~~---~~D---i~~~s~~K~l-~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~  248 (421)
T 2ctz_A          185 MGGYLLR-P---L-----AW---GAA---LVTHSLTKWV-GGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLT  248 (421)
T ss_dssp             GGGTSCC-G---G-----GG---TCS---EEEEETTTTT-TCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHH
T ss_pred             cccccCC-c---c-----cc---CCe---EEEECCcccc-cCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhh
Confidence            3333221 1   1     11   245   7889999999 6689999998874212111    1122110          


Q ss_pred             -----------------hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEe
Q 009517          380 -----------------ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCN  442 (533)
Q Consensus       380 -----------------~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~  442 (533)
                                       .......+++.++++...++              .+....++..++.+.+.+.|.+.|++..+
T Consensus       249 ~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~--------------~l~~r~~~~~~~a~~l~~~L~~~p~v~~v  314 (421)
T 2ctz_A          249 EAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGME--------------TLSLRAERHVENTLHLAHWLLEQPQVAWV  314 (421)
T ss_dssp             HHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHT--------------THHHHHHHHHHHHHHHHHHHHTCTTEEEE
T ss_pred             hhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcc--------------hHHHHHHHHHHhHHHHHHHHHhCCCeeEE
Confidence                             01122445555555554443              12333445557888899999998888765

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=99.91  E-value=2.2e-22  Score=209.27  Aligned_cols=370  Identities=15%  Similarity=0.101  Sum_probs=240.5

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      ++.++++...++.||++      |||+..|....                      ..+++    ++++++++.+++.+.
T Consensus        52 vi~rg~G~~l~D~dG~~------ylD~~~g~~~~----------------------~lGh~----~p~v~~Ai~~q~~~l   99 (473)
T 4e3q_A           52 VVTHGEGPYIVDVNGRR------YLDANSGLWNM----------------------VAGFD----HKGLIDAAKAQYERF   99 (473)
T ss_dssp             EEEEEETTEEEETTCCE------EEETTTTTTTC----------------------TTCSC----CHHHHHHHHHHHHHC
T ss_pred             EEEeeecCEEEeCCCCE------EEEcccCHHHh----------------------hccCC----CHHHHHHHHHHHHhc
Confidence            45566777777778777      88887775432                      22222    699999999999874


Q ss_pred             CCCCccccCCCcc-cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc------CCC-CeEEEcCCcCcc
Q 009517          156 PGRATGAYSHSQG-IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR------SEN-DGILCPIPQYPL  227 (533)
Q Consensus       156 ~~~~~~~Y~~~~G-~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~------~~g-d~Vlv~~p~~~~  227 (533)
                      ..     |....+ ..+....+|+.+.+..+  .+.++|+++++|+||++.+++.++.      .++ .+|+....+|++
T Consensus       100 ~~-----~~~~~~~~~~~~~~lAe~L~~~~p--~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG  172 (473)
T 4e3q_A          100 PG-----YHAFFGRMSDQTVMLSEKLVEVSP--FDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHG  172 (473)
T ss_dssp             CC-----CCCCTTEEEHHHHHHHHHHHHHSS--CSSCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCC
T ss_pred             cc-----ccccccccCHHHHHHHHHHHhhCC--CCccEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECC
Confidence            32     222111 22333445555555433  3457899999999999999998641      233 578999999998


Q ss_pred             hHHHHHHhCC------------eEEEEecCCC---CCCCC--------CHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCc
Q 009517          228 YSASIALHGG------------TLVPYYLDEA---TGWGL--------ETSEVKKQLEAAKAKGITVRALVVINPGNPTG  284 (533)
Q Consensus       228 ~~~~~~~~g~------------~~~~v~~~~~---~~~~l--------d~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG  284 (533)
                      ..........            ....++....   ...+-        ..+++++.|....  ..++.+||++..+.-.|
T Consensus       173 ~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~--~~~iAavi~EPiqg~gG  250 (473)
T 4e3q_A          173 VTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREG--ADTIAGFFAEPVMGAGG  250 (473)
T ss_dssp             SSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBSTTT
T ss_pred             CccccccccccccccccCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhC--CCceEEEEeCCccCCCC
Confidence            6554433321            1222222110   00011        1345566665431  12567777776676677


Q ss_pred             c-CCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCC-CeeEE
Q 009517          285 Q-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG-KRGGY  362 (533)
Q Consensus       285 ~-~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G-~riG~  362 (533)
                      + +++++.|++|.++|++||+++|+||++++|..+|.  +..     .+..++.||     +.+++|.++  .| +++|.
T Consensus       251 ~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~--~fa-----~e~~gv~PD-----i~t~~K~l~--gG~~Pl~a  316 (473)
T 4e3q_A          251 VIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGN--TWG-----CVTYDFTPD-----AIISSKNLT--AGFFPMGA  316 (473)
T ss_dssp             SBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSS--SCH-----HHHTTCCCS-----EEEECGGGG--TTSSCCEE
T ss_pred             ceeCCHHHHHHHHHHhcccceEEeccCccccCCcccc--hhH-----HHhcCCCCC-----hHHhccccc--CCCCCccc
Confidence            6 56677899999999999999999999999876664  222     222334788     667899995  36 99999


Q ss_pred             EEEecCCHHHHHHHHHh--------hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009517          363 MEVTGFSAEVREQIYKV--------ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFN  434 (533)
Q Consensus       363 v~~~~~~~~~~~~l~~~--------~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  434 (533)
                      +++   .+++++.+...        ...|++.++++++++.+.|+           ..+ .+.+.++.++..++|.+.|+
T Consensus       317 v~~---~~~i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~-----------~i~-~~~l~~~~~~~g~~l~~~L~  381 (473)
T 4e3q_A          317 VIL---GPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAID-----------VVM-NEGLAENVRRLAPRFEERLK  381 (473)
T ss_dssp             EEE---CHHHHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHH-----------HHH-HSSHHHHHHHHHHHHHHHHH
T ss_pred             ccc---cHHHHHHhccccccccccccCCCCCCCcchhhhhhhhhh-----------hhc-cccHHHHHHHHHHHHHHHHH
Confidence            998   99999888653        23678999999999998874           111 13455666667777777776


Q ss_pred             cC---CCceEecCCceeEEecccCCCHHHHHHHHhcCCC----ChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec
Q 009517          435 SL---EGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTV----PDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL  507 (533)
Q Consensus       435 ~~---~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~  507 (533)
                      ++   |.+.-++..|.|+.+ .+..+..     .+...+    ....+ ...+.++||++.|.   +     +.+||++.
T Consensus       382 ~l~~~~~v~~vRG~Gl~~gi-elv~~~~-----~~~~~~~~~~~~~~~-~~~~~~~Gll~~~~---g-----~~i~l~PP  446 (473)
T 4e3q_A          382 HIAERPNIGEYRGIGFMWAL-EAVKDKA-----SKTPFDGNLSVSERI-ANTCTDLGLICRPL---G-----QSVVLCPP  446 (473)
T ss_dssp             HHTTSTTEEEEEEETTEEEE-EECSBTT-----TTBCCCGGGCHHHHH-HHHHHHTTEECEEE---T-----TEEEECCC
T ss_pred             HHhcCCCeeEEeecceEEEE-EEecCcc-----ccccccccHHHHHHH-HHHHHHCCcEEEec---C-----CEEEEeCC
Confidence            54   667667777766543 2211100     000111    12233 34556789999872   2     27899874


Q ss_pred             --CCcCcHHHHHHHHHHHHHHHHHH
Q 009517          508 --PQEDKIPAIVTRLTDFHKNFMDK  530 (533)
Q Consensus       508 --~~~e~i~~~~~~l~~~l~~~~~~  530 (533)
                        +++++|++++++|+++++++.++
T Consensus       447 L~it~~eid~~~~~l~~al~~v~ae  471 (473)
T 4e3q_A          447 FILTEAQMDEMFDKLEKALDKVFAE  471 (473)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence              89999999999999999988765

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=99.90  E-value=9e-22  Score=209.05  Aligned_cols=324  Identities=13%  Similarity=0.104  Sum_probs=216.7

Q ss_pred             cccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhc-------cCCCC------eEEEcCCcCcc
Q 009517          161 GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI-------RSEND------GILCPIPQYPL  227 (533)
Q Consensus       161 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-------~~~gd------~Vlv~~p~~~~  227 (533)
                      ..|....+..++.+++.+++.+.+|.+  .+++++|+|+++|+..++.+++       ..+|+      +|+++.++|+.
T Consensus       138 ~~~~~s~~~~~le~~~~~~la~l~g~~--~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s  215 (515)
T 2jis_A          138 YTYEIAPVFVLMEEEVLRKLRALVGWS--SGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYS  215 (515)
T ss_dssp             TCTTTCHHHHHHHHHHHHHHHHHHTCS--SCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTH
T ss_pred             CchhhchHHHHHHHHHHHHHHHHhCCC--CCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHH
Confidence            457666677788888888888777744  6899999999999999988873       11465      89999999999


Q ss_pred             hHHHHHHhCC---eEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCC
Q 009517          228 YSASIALHGG---TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGL  304 (533)
Q Consensus       228 ~~~~~~~~g~---~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~  304 (533)
                      +...+...|.   +++.+|+++  ++.+|+++|+++|++....|.++++|++++|+||||.+.+   +++|+++|++||+
T Consensus       216 ~~~~~~~~g~g~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~---l~~I~~la~~~g~  290 (515)
T 2jis_A          216 IQKGAAFLGLGTDSVRVVKADE--RGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDP---LEAIADVCQRHGL  290 (515)
T ss_dssp             HHHHHHHTTSCGGGEEEECBCT--TSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHHHHHHHHHHTC
T ss_pred             HHHHHHHcCCCCCcEEEEecCC--CCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccC---HHHHHHHHHHcCC
Confidence            9999999888   899999864  5789999999999876555556899999999999999988   8999999999999


Q ss_pred             EEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCH-HHHHHHH----Hh
Q 009517          305 VLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSA-EVREQIY----KV  379 (533)
Q Consensus       305 ~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~-~~~~~l~----~~  379 (533)
                      ++++|++|.++.+... .+.   .....+.  ..|   +++.|++|.+ + .+.++|++++  .++ +++....    ..
T Consensus       291 ~l~vD~a~~~~~~~~~-~~~---~~~~g~~--~aD---~v~~s~hK~l-~-~p~g~G~l~~--~~~~~~~~~~~~~~~~y  357 (515)
T 2jis_A          291 WLHVDAAWGGSVLLSQ-THR---HLLDGIQ--RAD---SVAWNPHKLL-A-AGLQCSALLL--QDTSNLLKRCHGSQASY  357 (515)
T ss_dssp             EEEEEETTGGGGGGCT-TTG---GGGTTGG--GCS---EEEECTTSTT-C-CCSCCEEEEE--SCCSCHHHHHHCC----
T ss_pred             eEEEehhhhhHHHhCh-hhH---hhcCCCc--cCC---EEEECccccc-C-CCCCeeEEEE--eChHHHHHHHhcCCchh
Confidence            9999999998766432 111   1111110  134   6788999988 4 2367899988  233 3555421    11


Q ss_pred             h-h--c------ccc---------CChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceE
Q 009517          380 A-S--V------NLC---------SNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITC  441 (533)
Q Consensus       380 ~-~--~------~~~---------~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~  441 (533)
                      . .  .      ..+         ...+.+.++...+.            .+.++++.++..++++++.+.|+++||+++
T Consensus       358 l~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg------------~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  425 (515)
T 2jis_A          358 LFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQG------------DQGLERRIDQAFVLARYLVEEMKKREGFEL  425 (515)
T ss_dssp             -----CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHTSTTEEE
T ss_pred             ccCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHHh------------HHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence            1 0  0      000         11233333333331            234566778888999999999999889988


Q ss_pred             ec-CCceeEEecccCCCHHHHHHHHhcCC-C-Ch--H------HHHHHHHHccceEEEcCCCCCCCCCCceEEEEec---
Q 009517          442 NK-AEGAMYLFPRIQLPEKAIKAAEAEKT-V-PD--A------FYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL---  507 (533)
Q Consensus       442 ~~-~~gg~~~~~~~~~~~~~~~~~~~~~~-~-~~--~------~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~---  507 (533)
                      +. +..+.++|..+  |...      .+. + .+  .      ..+...+.+.|+.+......  ....+++|++++   
T Consensus       426 ~~~~~~~~v~f~~~--p~~~------~~~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~--~~~~~~lRis~~~~~  495 (515)
T 2jis_A          426 VMEPEFVNVCFWFV--PPSL------RGKQESPDYHERLSKVAPVLKERMVKEGSMMIGYQPH--GTRGNFFRVVVANSA  495 (515)
T ss_dssp             SSCCSSSEEEEEEC--CGGG------TTCTTSTTHHHHHHTHHHHHHHHHHHHTSCEEEEEEE--TTEEEEEEEECCCTT
T ss_pred             eCCCCeeEEEEEEe--Cccc------cccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEE--CCceEEEEEEeCCCC
Confidence            75 44455554221  1110      000 0 00  0      01223445567644311100  112348999994   


Q ss_pred             CCcCcHHHHHHHHHHHHHH
Q 009517          508 PQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       508 ~~~e~i~~~~~~l~~~l~~  526 (533)
                      .++++|++++++|++++++
T Consensus       496 ~t~edid~~~~~l~~~~~~  514 (515)
T 2jis_A          496 LTCADMDFLLNELERLGQD  514 (515)
T ss_dssp             CCHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHhh
Confidence            7888999999999887653

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=99.88  E-value=1.4e-21  Score=202.06  Aligned_cols=229  Identities=15%  Similarity=0.111  Sum_probs=167.1

Q ss_pred             HHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcC-CcCcchHHHH----------HHhCCeEE
Q 009517          172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI-PQYPLYSASI----------ALHGGTLV  240 (533)
Q Consensus       172 lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~-p~~~~~~~~~----------~~~g~~~~  240 (533)
                      .++++++.+.+.+|.+....+++++ +|++|+..++..++ ++||+|+++. |.|..+...+          +..|++++
T Consensus        66 ~~~~l~~~la~~~g~~~~~~~i~~~-sGt~Ai~~al~al~-~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~~  143 (431)
T 3ht4_A           66 GRDTLEKVYADVFGAEAGLVRPQII-SGTHAISTALFGIL-RPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYN  143 (431)
T ss_dssp             HHHHHHHHHHHHTTCSEECCBTTSC-SHHHHHHHHHHTTC-CTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEEE
T ss_pred             hHHHHHHHHHHHhCCCcccccceee-CHHHHHHHHHHHhC-CCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCCEEE
Confidence            3555555555555643322334455 67899999999988 8999999998 9999988655          34799999


Q ss_pred             EEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEe-CCCCCCccCCCHHHHHHHHHHHHH--cCCEEEEccccccccc
Q 009517          241 PYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLAEENQRAIVDFCKK--EGLVLLADEVYQENVY  317 (533)
Q Consensus       241 ~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~-~p~NPtG~~~s~~~l~~i~~l~~~--~~~~lI~De~y~~~~~  317 (533)
                      .++.++  ++.+|+++|++++++      ++++|+++ +||||+|.+.+.+++++|+++|++  +|+++|+||+|..+.+
T Consensus       144 ~v~~~~--~~~~d~e~l~~~l~~------~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~  215 (431)
T 3ht4_A          144 AVPLTE--GGLVDFEAVAAAIHS------NTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIE  215 (431)
T ss_dssp             ECCBCT--TSSBCHHHHHHHCCT------TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSS
T ss_pred             EeCCCC--CCCcCHHHHHhhcCC------CCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhcc
Confidence            999875  468999999999976      79999999 699999999999999999999999  9999999999999776


Q ss_pred             cCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-cc----ccCChHHHH
Q 009517          318 VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VN----LCSNISGQI  392 (533)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~----~~~~~~~q~  392 (533)
                      ... + .       .+   ..|   +++.|+||+++|..+...||+++   ++++++.+..... ..    .+++...+.
T Consensus       216 ~~~-~-~-------~~---g~D---i~~~S~sK~lgg~~~~~GG~v~~---~~~li~~l~~~~~~~~~g~~~~~~~~~~~  277 (431)
T 3ht4_A          216 EQE-P-C-------HV---GAD---LMAGSLIKNPGGGIVKTGGYIVG---KEQYVEACAYRLTSPGIGAEAGASLYSLQ  277 (431)
T ss_dssp             SCC-G-G-------GT---TCS---EEEEETTSGGGTTTCSSCEEEEE---CHHHHHHHHHHHSCTTTTTSCSCCCSCSH
T ss_pred             CCC-c-c-------cc---CCe---EEEcCccccCCCCCCCceEEEEe---cHHHHHHHHHHhccCCcccccCccHHHHH
Confidence            432 1 0       11   134   78999999974312245599998   9999998876442 11    112122123


Q ss_pred             HHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEec
Q 009517          393 LASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNK  443 (533)
Q Consensus       393 a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~  443 (533)
                      ++...+              .....+.++..+++.++.+.|+++ |+.+.+
T Consensus       278 ~~~~~l--------------~~~~~~~~~~~~~a~~l~~~L~~~-g~~v~p  313 (431)
T 3ht4_A          278 EMYQGF--------------FLAPHVAGQALKGAIFTAAFLEKL-GMNTSP  313 (431)
T ss_dssp             HHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH-TCCEES
T ss_pred             HHHhHh--------------hhHHHHHHHHHHHHHHHHHHHHhC-cCEecC
Confidence            333222              233556677788888999999888 666643

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=99.87  E-value=6.2e-21  Score=195.53  Aligned_cols=247  Identities=12%  Similarity=0.130  Sum_probs=178.2

Q ss_pred             HHHHHHHHHHHhc---CCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEE---cCChHHHHHHHHHHhccCCC
Q 009517          142 ADSIERAWQILDQ---IPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFL---TDGASPAVHMMMQLLIRSEN  215 (533)
Q Consensus       142 ~~v~~~~~~~~~~---~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~---t~G~~~al~~~~~~l~~~~g  215 (533)
                      .++++++.+....   ......+.|++. |..+|++.+|++++        .+..++   ++||++|+..++..++ ++|
T Consensus        32 ~~vl~a~~~~~~~~~~~~~~~~~~y~~~-~~~~Le~~lA~l~g--------~e~alv~p~~~sGt~Ai~~al~all-~~G  101 (409)
T 3jzl_A           32 AKVLDAFQENKVSDFHFHPSTGYGYDDE-GRDTLERVYATVFK--------TEAALVRPQIISGTHAISTVLFGIL-RPD  101 (409)
T ss_dssp             HHHHHHHHHTTCCGGGGCCCCTTCTTCH-HHHHHHHHHHHHHT--------CSEEEEETTSCSHHHHHHHHHHHHC-CTT
T ss_pred             HHHHHHHHHhhhhhhccCCCcCCCCChh-HHHHHHHHHHHHhC--------CCcEEEECCCccHHHHHHHHHHHhc-CCC
Confidence            4566666554311   111123445544 57788888888875        344555   8899999999999998 899


Q ss_pred             CeEEEcC-CcCcchHHH----------HHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeC----CC
Q 009517          216 DGILCPI-PQYPLYSAS----------IALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVIN----PG  280 (533)
Q Consensus       216 d~Vlv~~-p~~~~~~~~----------~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~----p~  280 (533)
                      |+|+++. |.|..+...          ++..|++++.++.++  ++.+|++++++++++      ++++|++++    |+
T Consensus       102 D~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~~--~g~~d~e~l~~ai~~------~tklV~i~~s~g~p~  173 (409)
T 3jzl_A          102 DELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLE--NGDVDFPRIAKKMTP------KTKMIGIQRSRGYAD  173 (409)
T ss_dssp             CEEEECSSSCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCCT--TSCCCHHHHHHHCCT------TEEEEEEECSCTTSS
T ss_pred             CEEEEeCCCCcHhHHHHHhcccchhhHHHHcCCEEEEeCCCC--CCCcCHHHHHHhccC------CCeEEEEECCCCCCC
Confidence            9999998 999998754          456799999998864  467999999999976      799999999    99


Q ss_pred             CCCccCCCHHHHHHHHHHHHH--cCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCC-
Q 009517          281 NPTGQVLAEENQRAIVDFCKK--EGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG-  357 (533)
Q Consensus       281 NPtG~~~s~~~l~~i~~l~~~--~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G-  357 (533)
                      ||||.+.   ++++|+++|++  +|+++|+|++|..+.+... +.        .+   ..|   |++.|+||++ |.+| 
T Consensus       174 nptg~v~---~l~~I~~la~~~~~~~~livD~a~~~~~~~~~-p~--------~~---g~D---iv~~S~sK~l-gg~~~  234 (409)
T 3jzl_A          174 RPSFTIE---KIKEMIVFVKNINPEVIVFVDNCYGEFVEYQE-PP--------EV---GAD---IIAGSLIKNP-GGGLA  234 (409)
T ss_dssp             SCCCCHH---HHHHHHHHHHHHCTTCEEEEECTTCTTTSSCC-SG--------GG---TCS---EEEEETTSGG-GTTTC
T ss_pred             CCcCccc---cHHHHHHHHHhhCCCCEEEEeCCcccccccCC-cc--------cc---CCe---EEEECccccC-CccCC
Confidence            9999874   59999999999  9999999999988664322 10        11   234   8899999999 5445 


Q ss_pred             CeeEEEEEecCCHHHHHHHHHhhh-c----cccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009517          358 KRGGYMEVTGFSAEVREQIYKVAS-V----NLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDA  432 (533)
Q Consensus       358 ~riG~v~~~~~~~~~~~~l~~~~~-~----~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  432 (533)
                      .+.||+++   ++++++.+..... .    ..++....+.++...|              +....++++..+++.++.+.
T Consensus       235 ~~GG~v~~---~~~li~~l~~~~~~~~~g~~~g~~~~~~~~~l~gl--------------~~~~~r~~~~~~~a~~la~~  297 (409)
T 3jzl_A          235 KTGGYIAG---KEALVDLCGYRLTTPGIGREAGASLYSLLEMYQGF--------------FLAPHVTAQAIKGARFTAAM  297 (409)
T ss_dssp             SSCEEEEE---CHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEe---CHHHHHHHHHHhccccccccccccHHHHHHHHHHH--------------hhHHHHHHHHHHHHHHHHHH
Confidence            45799998   8999999877432 1    1122221123332222              33455667778889999999


Q ss_pred             HhcCCCceEec
Q 009517          433 FNSLEGITCNK  443 (533)
Q Consensus       433 L~~~~g~~~~~  443 (533)
                      |+++ |+++.+
T Consensus       298 L~~~-g~~v~p  307 (409)
T 3jzl_A          298 LAEF-GVEADP  307 (409)
T ss_dssp             HHHT-TCEEES
T ss_pred             HHhC-CCcccC
Confidence            9998 777644

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=99.87  E-value=1.2e-20  Score=194.01  Aligned_cols=230  Identities=15%  Similarity=0.109  Sum_probs=169.7

Q ss_pred             ccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEE---cCChHHHHHHHHHHhccCCCCeEEEcC-CcCcchHHH------
Q 009517          162 AYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFL---TDGASPAVHMMMQLLIRSENDGILCPI-PQYPLYSAS------  231 (533)
Q Consensus       162 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~---t~G~~~al~~~~~~l~~~~gd~Vlv~~-p~~~~~~~~------  231 (533)
                      .|+.. |..+|++.+|++++        .+..++   ++||++|+..++..++ ++||+|++++ |.|..+...      
T Consensus        69 ~y~~~-~~~~Le~~lA~l~g--------~e~alv~p~~~sGt~Ai~~al~all-~pGD~Vl~~~~~~y~~~~~~~g~~~~  138 (427)
T 3i16_A           69 GYGDI-GRDSLDAVYARVFN--------TESALVRPHFVNGTHALGAALFGNL-RPGNTMLSVCGEPYDTLHDVIGITEN  138 (427)
T ss_dssp             CTTCH-HHHHHHHHHHHHHT--------CSEEEEETTCCSHHHHHHHHHHHHC-CTTCEEEESSSSCCGGGHHHHTCSCC
T ss_pred             CCCHH-HHHHHHHHHHHHhC--------CcceEEeCCCccHHHHHHHHHHHHh-CCCCEEEEeCCCccHHHHHHHhcccc
Confidence            34443 57788888888875        233355   8889999999999998 8999999999 999988743      


Q ss_pred             -----HHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeC----CCCCCccCCCHHHHHHHHHHHHH-
Q 009517          232 -----IALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVIN----PGNPTGQVLAEENQRAIVDFCKK-  301 (533)
Q Consensus       232 -----~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~----p~NPtG~~~s~~~l~~i~~l~~~-  301 (533)
                           +...|++++.++.+++  +.+|++++++++++    .+++++|++++    |+||||.+   .++++|+++|++ 
T Consensus       139 ~~~~~l~~~G~~~~~v~~~~~--g~~D~e~l~~~l~~----~~~tklV~i~~s~~~p~nptg~i---~dl~~i~~la~~~  209 (427)
T 3i16_A          139 SNMGSLKEFGINYKQVDLKED--GKPNLEEIEKVLKE----DESITLVHIQRSTGYGWRRALLI---EDIKSIVDCVKNI  209 (427)
T ss_dssp             CSSCCTGGGTCEEEECCCCTT--SSCCHHHHHHHHHT----CTTEEEEEEECSCCSSSSCCCCH---HHHHHHHHHHHHH
T ss_pred             chHHHHHHcCCEEEEecCccC--CCcCHHHHHHHhhC----CCCCEEEEEEcCCCCCCCCcccH---HHHHHHHHHHHHh
Confidence                 4567999999998653  47899999999982    01799999998    99999876   569999999999 


Q ss_pred             -cCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCC-CeeEEEEEecCCHHHHHHHHHh
Q 009517          302 -EGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFSAEVREQIYKV  379 (533)
Q Consensus       302 -~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G-~riG~v~~~~~~~~~~~~l~~~  379 (533)
                       +|+++|+|++|..+.+... +.        .+   ..|   |+++|+||++ |.+| .+.||+++   ++++++.+...
T Consensus       210 ~~g~~livD~a~~~~~~~~~-p~--------~~---gaD---iv~~S~sK~l-gg~g~~~gG~i~~---~~~li~~l~~~  270 (427)
T 3i16_A          210 RKDIICFVDNCYGEFMDTKE-PT--------DV---GAD---LIAGSLIKNI-GGGIAPTGGYLAG---TKDCIEKTSYR  270 (427)
T ss_dssp             CTTSEEEEECTTTTTSSSSC-GG--------GG---TCS---EEEEETTSGG-GTTTCCSCEEEEE---CHHHHHHHHHH
T ss_pred             CCCCEEEEECCCccccccCC-cc--------cc---CCe---EEEecCcccC-CCCCCceEEEEEE---CHHHHHHHHHh
Confidence             9999999999988664321 10        11   234   8899999999 5445 67899998   99999998874


Q ss_pred             hh-ccc--cCCh-HH-HHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecC
Q 009517          380 AS-VNL--CSNI-SG-QILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKA  444 (533)
Q Consensus       380 ~~-~~~--~~~~-~~-q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~  444 (533)
                      .. ...  ...+ +. ..++...              .+.+..+.++..+++.++.+.|+++ |+.+.+.
T Consensus       271 ~~~~~~g~~~~~~~~~a~~~l~g--------------l~~~~~r~~~~~~~a~~la~~L~~~-g~~V~p~  325 (427)
T 3i16_A          271 LTVPGIGGECGSTFGVVRSMYQG--------------LFLAPHISMEALKGAILCSRIMELA-GFEVMPK  325 (427)
T ss_dssp             HSCTTTGGGCCCCTTCHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHT-TCEEESC
T ss_pred             cccCccCccCCccHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhC-CCeecCC
Confidence            32 111  1111 22 2222222              2334566777888899999999998 6676543

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=99.87  E-value=1.4e-20  Score=193.46  Aligned_cols=230  Identities=15%  Similarity=0.138  Sum_probs=169.6

Q ss_pred             cccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEE---cCChHHHHHHHHHHhccCCCCeEEEcC-CcCcchHH------
Q 009517          161 GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFL---TDGASPAVHMMMQLLIRSENDGILCPI-PQYPLYSA------  230 (533)
Q Consensus       161 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~---t~G~~~al~~~~~~l~~~~gd~Vlv~~-p~~~~~~~------  230 (533)
                      +.|++. |..+|++.+|++++        .+..++   ++||++|+..++.+++ +|||+|++++ |.|..+..      
T Consensus        69 y~Y~~~-g~~~Le~~lA~l~g--------~e~alv~p~~~sGt~A~~~al~all-~pGD~Vl~~~~~~y~~~~~~~g~~~  138 (427)
T 3hvy_A           69 YGYNDI-GRDSLDRVYANIFN--------TESAFVRPHFVNGTHAIGAALFGNL-RPNDTMMSICGMPYDTLHDIIGMDD  138 (427)
T ss_dssp             TCTTCH-HHHHHHHHHHHHHT--------CSEEEEETTCCSHHHHHHHHHHHTC-CTTCEEEECSSSCCGGGHHHHTCCT
T ss_pred             CCCCch-hHHHHHHHHHHHhC--------CCceEEeCCCCcHHHHHHHHHHHhc-CCCCEEEEeCCCCchhHHHHhcccc
Confidence            445554 57888888888875        344566   7889999999999998 8999999999 99998773      


Q ss_pred             -----HHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeC----CCCCCccCCCHHHHHHHHHHHHH
Q 009517          231 -----SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVIN----PGNPTGQVLAEENQRAIVDFCKK  301 (533)
Q Consensus       231 -----~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~----p~NPtG~~~s~~~l~~i~~l~~~  301 (533)
                           .++..|++++.++.+   ++.+|++++++++++    .+++|+|++++    |+||||.+   .++++|+++|++
T Consensus       139 ~~~~~~l~~~G~~~~~v~~~---~~~~d~e~l~~~i~~----~~~tklV~i~~s~gyp~nptg~v---~dl~~i~~ia~~  208 (427)
T 3hvy_A          139 SKKVGSLREYGVKYKMVDLK---DGKVDINTVKEELKK----DDSIKLIHIQRSTGYGWRKSLRI---AEIAEIIKSIRE  208 (427)
T ss_dssp             TCCSCCTGGGTCEEEECCCB---TTBCCHHHHHHHHHH----CTTEEEEEEESSCCSSSSCCCCH---HHHHHHHHHHHH
T ss_pred             chhhhHHHHcCCEEEEecCC---CCCcCHHHHHHHhhC----CCCCEEEEEECCCCCCCCccccH---HHHHHHHHHHHH
Confidence                 345679999999882   458999999999983    11799999999    99999876   459999999999


Q ss_pred             --cCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCC-CeeEEEEEecCCHHHHHHHHH
Q 009517          302 --EGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFSAEVREQIYK  378 (533)
Q Consensus       302 --~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G-~riG~v~~~~~~~~~~~~l~~  378 (533)
                        +|+++|+|++|..+.+... +.        .+   ..|   |++.|+||++ |.+| .+.||+++   ++++++.+..
T Consensus       209 ~~~g~~livD~a~~~~~~~~~-p~--------~~---gaD---iv~~S~sK~l-gg~g~~~GG~i~~---~~~li~~l~~  269 (427)
T 3hvy_A          209 VNENVIVFVDNCYGEFVEEKE-PT--------DV---GAD---IIAGSLIKNI-GGGIATTGGYIAG---KEEYVTQATF  269 (427)
T ss_dssp             HCSSSEEEEECTTCTTTSSSC-GG--------GG---TCS---EEEEETTSGG-GTTTCCSCEEEEE---CHHHHHHHHH
T ss_pred             hCCCCEEEEECCccccccCCC-Cc--------cc---CCe---EEEECCcccc-cccccceEEEEEE---CHHHHHHHHH
Confidence              8999999999988664321 10        11   234   8899999999 5344 56799988   9999999887


Q ss_pred             hhh-ccc---cCChHH-HHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecC
Q 009517          379 VAS-VNL---CSNISG-QILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKA  444 (533)
Q Consensus       379 ~~~-~~~---~~~~~~-q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~  444 (533)
                      ... ...   ..+++. +.++...+              ..+..+.++..+++.++.+.|+++ |+.+.+.
T Consensus       270 ~~~~~~~g~~~~~~~~~a~~~~~gl--------------~~~~~r~~~~~~~a~~la~~L~~~-g~~V~p~  325 (427)
T 3hvy_A          270 RVTVPGIGGECGSTFGVMRSLYEGL--------------FMAPHVTIEAVKGAVFCARIMELA-GFDVLPK  325 (427)
T ss_dssp             HHSCTTTGGGCCCCTTCHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHT-TCEEESC
T ss_pred             HhhcCCcccccCCCHHHHHHHHHhH--------------hHHHHHHHHHHHHHHHHHHHHHhC-CCeecCC
Confidence            532 111   112122 33333222              234456677888888999999998 7676543

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=99.86  E-value=7e-21  Score=207.50  Aligned_cols=317  Identities=14%  Similarity=0.106  Sum_probs=196.5

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHH-HHHhCCeEEEEecCCC
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS-IALHGGTLVPYYLDEA  247 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~-~~~~g~~~~~v~~~~~  247 (533)
                      ..++++.+|++++      .+ ..+++++|+++++..++.+++ ++||+|+++.|+|..+... +...|++++.++....
T Consensus       175 i~e~e~~lA~~~g------ae-~~i~v~nGtt~an~~ai~al~-~pGD~VLv~~~~H~S~~~~~~~l~Ga~~v~v~~~~~  246 (730)
T 1c4k_A          175 AVAAEKHAARVYN------AD-KTYFVLGGSSNANNTVTSALV-SNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRN  246 (730)
T ss_dssp             HHHHHHHHHHHTT------CS-EEEEESSHHHHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEEC
T ss_pred             HHHHHHHHHHHHC------CC-cEEEECCHHHHHHHHHHHHhc-CCCCEEEEcCCchHHHHHHHHHHCCCEEEEEeCCcc
Confidence            5788888888864      22 347889999999999999998 8999999999999988877 7888999998876532


Q ss_pred             CCCC----CCHHHH-----HHHHHHH-Hh--cCCCe-eEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEcccccc
Q 009517          248 TGWG----LETSEV-----KKQLEAA-KA--KGITV-RALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE  314 (533)
Q Consensus       248 ~~~~----ld~~~l-----~~~i~~~-~~--~g~~~-~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~  314 (533)
                       +|+    +|+++|     +++|++. .+  ..+.+ ++|++++| ||||.+.+   +++|+++|+++|+++|+||+|..
T Consensus       247 -~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~d---l~~I~~la~~~g~~livDeAh~~  321 (730)
T 1c4k_A          247 -PYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYN---AHEVVKRIGHLCDYIEFDSAWVG  321 (730)
T ss_dssp             -TTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEEC---HHHHHHHHGGGBSEEEEECTTCC
T ss_pred             -ccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecC---HHHHHHHHHHcCCeEEEEccccc
Confidence             344    688888     7777541 00  00011 89999999 58999988   89999999999999999999974


Q ss_pred             -ccccCCCCcccHHHHHh-hcCCCCCCceEEEEecCCccCCCCCCCeeEEEE-EecCCHHH--------HHHHHHhhh--
Q 009517          315 -NVYVPEKKFHSFKKVSR-SMGYGEKDISLVSFQSVSKGYYGECGKRGGYME-VTGFSAEV--------REQIYKVAS--  381 (533)
Q Consensus       315 -~~~~~~~~~~~~~~~~~-~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~-~~~~~~~~--------~~~l~~~~~--  381 (533)
                       +.|.+..+..+  .+.. .++  ..+.+++++.|+||+++   |.+.|+++ +.  +..+        ...+.....  
T Consensus       322 ~~~f~~~~~g~~--~l~~~~~g--~D~~~~iv~~S~hK~L~---g~~~gg~I~v~--~~~l~g~~~~i~~~~~~~~~~~~  392 (730)
T 1c4k_A          322 YEQFIPMMRNSS--PLLIDDLG--PEDPGIIVVQSVHKQQA---GFSQTSQIHKK--DSHIKGQLRYCDHKHFNNSFNLF  392 (730)
T ss_dssp             GGGSSGGGGGGC--TTSCCCCC--TTSCEEEEEECHHHHSS---CCTTCEEEEEE--CGGGTTSTTCCCHHHHHHHHHHH
T ss_pred             ccccCcccCCcC--cccccccC--CCCCCEEEEECCCCCCC---CCCCEEEEEec--chhhcCcccccCHHHHHHHHHHh
Confidence             33432101000  0100 111  12335799999999873   66655444 31  2211        122222211  


Q ss_pred             ccccCChHHHHHHHHHcCCCCCCChhHHHHHH-HHHHHHHHHHHHHHHHHHHHhc-CCCceEecCCc-------------
Q 009517          382 VNLCSNISGQILASLVMSPPKVGDESYESYCA-ERDGILSSLARRAKTLEDAFNS-LEGITCNKAEG-------------  446 (533)
Q Consensus       382 ~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~g-------------  446 (533)
                      .+.+++....++...++.          .... .-....+++.++.+.+++.|++ ++|+.+..|..             
T Consensus       393 ~stsp~~~~iaal~aA~~----------~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~  462 (730)
T 1c4k_A          393 MSTSPFYPMYAALDVNAA----------MQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTED  462 (730)
T ss_dssp             SCSSCCHHHHHHHHHHHH----------HHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHH
T ss_pred             CCCCCcHHHHHHHHHHHH----------HHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEcccccccccccccccccc
Confidence            223444444443333331          0111 1234556677778888899988 67888765431             


Q ss_pred             ------------------------e-eE-----EecccCCCHH--HHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCC
Q 009517          447 ------------------------A-MY-----LFPRIQLPEK--AIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFG  494 (533)
Q Consensus       447 ------------------------g-~~-----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~  494 (533)
                                              + ++     +.+.+  |.-  ........|. +... +.+.|.++||.+...    
T Consensus       463 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~--pg~~~~~g~~~~~g~-~~~~-l~~~L~e~GI~v~~~----  534 (730)
T 1c4k_A          463 MANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTT--PGINPETGDYEDFGV-PATI-VANYLRDHGIIPEKS----  534 (730)
T ss_dssp             HTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEEC--SSEETTTTEECSSCC-CHHH-HHHHHHHTTCCCSEE----
T ss_pred             ccccchhhccCccchhccccccCCcccccCCeEEEEEe--CCcccccccccccCC-CHHH-HHHHHHHCCcEEEEC----
Confidence                                    1 11     12111  100  0000000111 2233 345566679988642    


Q ss_pred             CCCCCceEEEEec--CCcCcHHHHHHHHHHHHHHHH
Q 009517          495 QVPGTWHFRCTIL--PQEDKIPAIVTRLTDFHKNFM  528 (533)
Q Consensus       495 ~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~~~  528 (533)
                         +...+|+++.  .++++++.++++|.++.+.+.
T Consensus       535 ---~~~~ir~~~s~g~t~e~i~~Ll~aL~~i~~~~~  567 (730)
T 1c4k_A          535 ---DLNSILFLMTPAETPAKMNNLITQLLQLQRLIE  567 (730)
T ss_dssp             ---CSSEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ---CCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhcc
Confidence               2337888885  788899999999999887663

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=99.85  E-value=6.1e-20  Score=201.91  Aligned_cols=175  Identities=17%  Similarity=0.168  Sum_probs=131.1

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCC
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEAT  248 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~  248 (533)
                      ..++++.++++++      .+ +.+++++|+++++..++.+++ ++||+|+++.|+|..+...+...|++++.++.... 
T Consensus       207 v~~~ee~la~l~G------~d-~~i~~~~Gtt~a~~~~i~al~-~~GD~Vlv~~~~h~s~~~~~~~~G~~~v~v~~~~~-  277 (755)
T 2vyc_A          207 FGESEKYAARVFG------AD-RSWSVVVGTSGSNRTIMQACM-TDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSRN-  277 (755)
T ss_dssp             HHHHHHHHHHHHT------CS-EEEEESSHHHHHHHHHHHHHC-CTTCEEEEESSCCHHHHHHHHHHCCEEEEECCCBC-
T ss_pred             HHHHHHHHHHHhC------CC-ceEEECCcHHHHHHHHHHHhc-CCCCEEEECCCchHHHHHHHHHcCCEEEEEeCCCC-
Confidence            5677777777764      22 457889999999999999998 89999999999999998889999999999987643 


Q ss_pred             CCC----C-----CHHHHHHHHHHH----HhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccc
Q 009517          249 GWG----L-----ETSEVKKQLEAA----KAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN  315 (533)
Q Consensus       249 ~~~----l-----d~~~l~~~i~~~----~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~  315 (533)
                      +|+    +     |+++|+++|++.    ...+.+++++++++| ||||.+.+   +++|+++|++||+++|+||+|...
T Consensus       278 ~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~d---l~~I~~ia~~~~~~livDeA~~~~  353 (755)
T 2vyc_A          278 RYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYN---AKEAQDLLEKTSDRLHFDEAWYGY  353 (755)
T ss_dssp             TTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEEC---HHHHHHHHTTTCSEEEEECTTCTT
T ss_pred             ccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecC---HHHHHHHHHHcCCEEEEECcCchh
Confidence            344    4     999999999762    112334468999998 79999988   899999999999999999999753


Q ss_pred             -cccCCC-CcccHHHHH--hhcCCCCCCceEEEEecCCccCCCCCCCe-eEEEEE
Q 009517          316 -VYVPEK-KFHSFKKVS--RSMGYGEKDISLVSFQSVSKGYYGECGKR-GGYMEV  365 (533)
Q Consensus       316 -~~~~~~-~~~~~~~~~--~~~~~~~~~~~vi~i~S~SK~~~gl~G~r-iG~v~~  365 (533)
                       .+.+.. +...+  ..  .+    ..+.++|++.|+||+++   |.+ .|++++
T Consensus       354 ~~~~~~~~~~~~~--~g~~aD----~~~~~~iv~~S~hK~L~---g~~~g~~i~~  399 (755)
T 2vyc_A          354 ARFNPIYADHYAM--RGEPGD----HNGPTVFATHSTHKLLN---ALSQASYIHV  399 (755)
T ss_dssp             GGGCGGGTTSSSS--CSCCCC----CSSBEEEEEEETTTSSS---CCTTCEEEEE
T ss_pred             cccCcccCCcchh--cCCcCC----ccCCCeEEEECcccccc---CcCCeeeeee
Confidence             232210 11111  10  01    13446889999999873   666 455555

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=99.78  E-value=1.1e-18  Score=193.21  Aligned_cols=343  Identities=13%  Similarity=0.101  Sum_probs=205.6

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCC-CCCEEEcCChHHHHHHHHHHhcc----CC-
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPAD-PNDIFLTDGASPAVHMMMQLLIR----SE-  214 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~-~~~i~~t~G~~~al~~~~~~l~~----~~-  214 (533)
                      ++++++++.+++.+...     +.......+....+|+.+.+..+  -. .+.|+++++|++|++.+++.+++    .. 
T Consensus       399 ~p~i~~Ai~~Q~~~l~h-----~~~~~~~~~~~~~Lae~L~~~~p--~~~l~~vff~~SGSeA~E~AlK~A~r~~~~~~g  471 (831)
T 4a0g_A          399 QAELAREMGYTAARFGH-----VMFPENVYEPALKCAELLLDGVG--KGWASRVYFSDNGSTAIEIALKMAFRKFCVDHN  471 (831)
T ss_dssp             HHHHHHHHHHHHHHHSS-----CCCTTEECHHHHHHHHHHHHTTT--TTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTT
T ss_pred             CHHHHHHHHHHHhhccc-----ccccccCCHHHHHHHHHHHHhCC--CCCCCEEEECCChhHHHHHHHHHHHHHHHhhcC
Confidence            48899999999887321     11111122334455666554322  12 46899999999999999998731    11 


Q ss_pred             -----------CCeEEEcCCcCcchHHHHHHh-CCe---------------E-------------EEEecCCC------C
Q 009517          215 -----------NDGILCPIPQYPLYSASIALH-GGT---------------L-------------VPYYLDEA------T  248 (533)
Q Consensus       215 -----------gd~Vlv~~p~~~~~~~~~~~~-g~~---------------~-------------~~v~~~~~------~  248 (533)
                                 ..+|+....+|++-....... |..               +             ..++....      +
T Consensus       472 ~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~  551 (831)
T 4a0g_A          472 FCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPE  551 (831)
T ss_dssp             C---------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSS
T ss_pred             CCccccccccCccEEEEecCCcccCceeeeeccCccccccccccccccCCccccCCccccccCCceEecCCccccccccc
Confidence                       236888999999865444333 210               0             01111100      0


Q ss_pred             --CCCCC------------------HHHHHHHHHHHH--hcCCCeeEEEEeCC-CCCCcc-CCCHHHHHHHHHHHHHcCC
Q 009517          249 --GWGLE------------------TSEVKKQLEAAK--AKGITVRALVVINP-GNPTGQ-VLAEENQRAIVDFCKKEGL  304 (533)
Q Consensus       249 --~~~ld------------------~~~l~~~i~~~~--~~g~~~~~iil~~p-~NPtG~-~~s~~~l~~i~~l~~~~~~  304 (533)
                        .|. |                  .+.|++.|++..  ....++.+||++.. ++..|. +++++.+++|.++|++||+
T Consensus       552 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gi  630 (831)
T 4a0g_A          552 YGTFT-SRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKI  630 (831)
T ss_dssp             TTEES-CHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTC
T ss_pred             ccccc-chhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCC
Confidence              000 1                  245666665310  11236777887765 788887 5688899999999999999


Q ss_pred             EEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCC-CeeEEEEEecCCHHHHHHHHHh----
Q 009517          305 VLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFSAEVREQIYKV----  379 (533)
Q Consensus       305 ~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G-~riG~v~~~~~~~~~~~~l~~~----  379 (533)
                      ++|+||++++|.+.|.  ......+  ++   .||     +.+|||.++  .| +++|++++   ++++++.+...    
T Consensus       631 lLI~DEV~tGfGRtG~--~fa~e~~--gv---~PD-----iitlsK~L~--gG~~Plgav~~---~~~i~~~~~~~~~~~  693 (831)
T 4a0g_A          631 PVIFDEVFTGFWRLGV--ETTTELL--GC---KPD-----IACFAKLLT--GGMVPLAVTLA---TDAVFDSFSGDSKLK  693 (831)
T ss_dssp             CEEEECTTTTTTTTSB--SSTHHHH--SS---CCS-----EEEECGGGG--TTSSCCEEEEE---CHHHHHTTCSSCGGG
T ss_pred             eEEEEcCccccccCCC--chhhHhc--CC---CCc-----EEEEecccc--cCccCcEEEEE---CHHHHHHHhcccccc
Confidence            9999999999877664  2332221  22   577     457999994  37 89999998   99999887542    


Q ss_pred             ---hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCceEecCCceeEEecccC
Q 009517          380 ---ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR-AKTLEDAFNSLEGITCNKAEGAMYLFPRIQ  455 (533)
Q Consensus       380 ---~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~  455 (533)
                         ...+++.++++++++.+.|+..+. +.    +.+.+.++.+.+++. ++.+.+.+.+.|.+..+++.|.|+.+- +.
T Consensus       694 ~~~hg~T~~g~Pla~Aaala~L~~i~~-~~----l~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vrg~Gl~~~ie-l~  767 (831)
T 4a0g_A          694 ALLHGHSYSAHAMGCATAAKAIQWFKD-PE----TNHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALE-LK  767 (831)
T ss_dssp             SCCCCCTTTTCHHHHHHHHHHHHHHHC-TT----TCTTBCTTSSBBCCCSCHHHHHHHHHSTTEEEEEEETTEEEEE-EC
T ss_pred             cceeecCCcccHHHHHHHHHHHHHHHh-hH----HHHHHHHHHHHHHHHHHHHHHHHHhhCCCceeEeecccEEEEE-Ee
Confidence               236788999999999887741000 00    000000000111110 123445566667788888888766542 32


Q ss_pred             CCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEe--cCCcCcHHHHHHHHHHHHHHH
Q 009517          456 LPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTI--LPQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~--~~~~e~i~~~~~~l~~~l~~~  527 (533)
                      .+..  ..  .........++ ..|.++||++.|+   +     +.+||++  .+++++|++++++|+++++++
T Consensus       768 ~~~~--~~--~~~~~~a~~~~-~~l~e~Gv~v~p~---g-----~~lrl~pp~~~t~e~id~~~~~l~~~l~~l  828 (831)
T 4a0g_A          768 ADAS--NS--GYASLYAKSLL-IMLREDGIFTRPL---G-----NVIYLMCGPCTSPEICRRLLTKLYKRLGEF  828 (831)
T ss_dssp             -------------CHHHHHHH-HHHHHTTEECCCB---T-----TEEEEECCTTCCHHHHHHHHHHHHHHHTTT
T ss_pred             cCcc--cc--ccchHHHHHHH-HHHHHCCcEEEec---C-----CEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            1100  00  00000122333 4456789999973   1     3899996  489999999999999988654

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=99.76  E-value=1.5e-17  Score=179.77  Aligned_cols=230  Identities=13%  Similarity=0.103  Sum_probs=154.1

Q ss_pred             cccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCC
Q 009517          167 QGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDE  246 (533)
Q Consensus       167 ~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~  246 (533)
                      .-+.++++.+|++++.       ...+++++|++.|+..++.+++ ++||+|+++.++|.++...+...|++++.++...
T Consensus       195 g~i~eaE~~lA~~fGa-------~~a~~v~nGts~An~~ai~al~-~pGD~VLv~r~~H~S~~~~l~lsGa~pv~v~~~~  266 (715)
T 3n75_A          195 GPHKEAEQYIARVFNA-------DRSYMVTNGTSTANKIVGMYSA-PAGSTILIDRNCHKSLTHLMMMSDVTPIYFRPTR  266 (715)
T ss_dssp             THHHHHHHHHHHHHTC-------SEEEEESSHHHHHHHHHHHHHC-CTTCEEEEESSCCHHHHHHHHHSCCEEEEECCCB
T ss_pred             HHHHHHHHHHHHHhCC-------CCceEECcHHHHHHHHHHHHhC-CCCCEEEECCCccHHHHHHHHHcCCEEEEEeccc
Confidence            3367899999998752       2346778888899999999998 8999999999999999999999999999998764


Q ss_pred             CCCCCC---------CHHHHHHHHHHHHhcCCCee---EEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEcccccc
Q 009517          247 ATGWGL---------ETSEVKKQLEAAKAKGITVR---ALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE  314 (533)
Q Consensus       247 ~~~~~l---------d~~~l~~~i~~~~~~g~~~~---~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~  314 (533)
                      + +|++         |++.|+++|++.    ++++   ++++++| ||+|.+++   +++|+++|+++  .+|+||+|..
T Consensus       267 ~-~~gi~~~i~~~~~d~e~Le~~l~~~----~~~k~p~~vivt~p-n~~G~v~d---l~~I~ela~~~--~livDEAH~~  335 (715)
T 3n75_A          267 N-AYGILGGIPQSEFQHATIAKRVKET----PNATWPVHAVITNS-TYDGLLYN---TDFIKKTLDVK--SIHFDSAWVP  335 (715)
T ss_dssp             C-TTCCBCCCCGGGGSHHHHHHHHHHS----TTCCSCSEEEEESS-CTTSEEEC---HHHHHHHCCCS--EEEEECTTCT
T ss_pred             c-ccccccCcccccCCHHHHHHHHhhC----cCccCceEEEEECC-CCCCccCC---HHHHHHHhCcC--cEEEcccccc
Confidence            3 5664         899999999862    1234   8999999 99999998   77888888765  3799999975


Q ss_pred             cc-ccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCC-eeEEEEEecCCHHH-HHHHHHhhh--ccccCChH
Q 009517          315 NV-YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGK-RGGYMEVTGFSAEV-REQIYKVAS--VNLCSNIS  389 (533)
Q Consensus       315 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~-riG~v~~~~~~~~~-~~~l~~~~~--~~~~~~~~  389 (533)
                      .. |.+..+..+  .+..+.   ..|..+++++|++|+++   |+ ..|++++   +.++ ...+.....  .+.+++.+
T Consensus       336 ~~~f~~~~~~~~--al~~g~---~aD~vii~~~S~hKtL~---gltqgs~i~v---~~~i~~~~~~~~~~~~~STSpsy~  404 (715)
T 3n75_A          336 YTNFSPIYEGKC--GMSGGR---VEGKVIYETQSTHKLLA---AFSQASMIHV---KGDVNEETFNEAYMMHTTTSPHYG  404 (715)
T ss_dssp             TGGGSGGGTTSS--TTSSSC---CTTCEEEEEECHHHHSS---CCTTCEEEEE---ESCCCHHHHHHHHHHTSCSSCCHH
T ss_pred             ccccCCcccccc--ccccCc---CCCEEEEEEeccccccc---CCCCeeEEEe---CchhhHHHHHHHHHhhcCCCchHH
Confidence            43 432111001  110000   13433467999999984   55 3577776   2221 222333322  33455665


Q ss_pred             HHHHHHHHcCCCCCCChhHHHHH-HHHHHHHHHHHHHHHHHHHHHhcC
Q 009517          390 GQILASLVMSPPKVGDESYESYC-AERDGILSSLARRAKTLEDAFNSL  436 (533)
Q Consensus       390 ~q~a~~~~L~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~  436 (533)
                      ..+++..+++          ... .+-+.+++++.++.+.+++.|+++
T Consensus       405 ~~AsldaA~~----------~~~~~~g~~~~~~l~~~a~~~r~~L~~i  442 (715)
T 3n75_A          405 IVASTETAAA----------MMKGNAGKRLINGSIERAIKFRKEIKRL  442 (715)
T ss_dssp             HHHHHHHHHH----------HHSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH----------HHHhhccHHHHHHHHHHHHHHHHHHHHh
Confidence            5555554431          011 122345566666777777777665

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=99.73  E-value=1.9e-17  Score=167.10  Aligned_cols=315  Identities=11%  Similarity=0.057  Sum_probs=199.1

Q ss_pred             CCCCHHHHHHHHHHHhcCCCCCcccc--CC-----CcccHHHHHHHHHHHHhhcCCCCCC-CCEEE-cCChHHHHHHHHH
Q 009517          138 GLFSADSIERAWQILDQIPGRATGAY--SH-----SQGIKGLRDTIAAGIEARDGFPADP-NDIFL-TDGASPAVHMMMQ  208 (533)
Q Consensus       138 ~~~p~~v~~~~~~~~~~~~~~~~~~Y--~~-----~~G~~~lr~aia~~~~~~~g~~~~~-~~i~~-t~G~~~al~~~~~  208 (533)
                      ...|++|++++.+.+.+..++....+  ..     ..-+.+.|+.++++++      ++. ++|++ |.|+|++++.++.
T Consensus        22 ~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~------~~~~~evif~t~~~T~a~n~a~~   95 (377)
T 3e77_A           22 SMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLA------VPDNYKVIFLQGGGCGQFSAVPL   95 (377)
T ss_dssp             CCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHT------CCTTEEEEEESSHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhC------CCCCCeEEEEcCchHHHHHHHHH
Confidence            33489999999987764322111111  11     1113456666777664      433 57888 5799999999999


Q ss_pred             HhccCC--CCeEEEcCCcCcch--HHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCc
Q 009517          209 LLIRSE--NDGILCPIPQYPLY--SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTG  284 (533)
Q Consensus       209 ~l~~~~--gd~Vlv~~p~~~~~--~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG  284 (533)
                      .+. .+  ||+|++..-++...  ...++..|..++.++.+.  +++++++.++.++++      ++++|.+++..|.||
T Consensus        96 ~l~-~~~~Gd~v~~~~~g~~~~~~~~~a~~~G~~~~~~~~~~--~~~~~~~~~~~~i~~------~t~lV~~~h~et~tG  166 (377)
T 3e77_A           96 NLI-GLKAGRCADYVVTGAWSAKAAEEAKKFGTINIVHPKLG--SYTKIPDPSTWNLNP------DASYVYYCANETVHG  166 (377)
T ss_dssp             HHG-GGSTTCEEEECCCSHHHHHHHHHHTTTSEEEECSCCCS--SSCSCCCGGGCCCCT------TCSCEEEESEETTTT
T ss_pred             hcc-CCCCCCeEEEEECCHHHHHHHHHHHHhCCceEEeccCC--CcCCCCChHHhccCC------CccEEEEeCccCchh
Confidence            987 44  89987766544432  234455677766666643  346677776666654      799999998889999


Q ss_pred             cCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEE
Q 009517          285 QVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYME  364 (533)
Q Consensus       285 ~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~  364 (533)
                      ++.+.        +|+++|+++++|.+++-    |..+ .++    .+     -+   +++.|-.|++ |++|+  |+++
T Consensus       167 ~~~pi--------i~~~~~~~~~vD~~q~~----g~~~-id~----~~-----~~---~~~~s~~K~~-gp~G~--g~l~  218 (377)
T 3e77_A          167 VEFDF--------IPDVKGAVLVCDMSSNF----LSKP-VDV----SK-----FG---VIFAGAQKNV-GSAGV--TVVI  218 (377)
T ss_dssp             EECSS--------CCCCTTCCEEEECTTTT----TSSC-CCG----GG-----CS---EEEEEGGGTT-SCTTC--EEEE
T ss_pred             eEchh--------hhccCCCEEEEEccccc----CCCC-Cch----hh-----cC---EEEEeccccc-CCCcc--EEEE
Confidence            99983        36788999999999975    3222 221    11     12   3567889999 88885  5555


Q ss_pred             EecCCHHHHHHH----------HHh---hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHH--HHHHHHHHHHHHHHH
Q 009517          365 VTGFSAEVREQI----------YKV---ASVNLCSNISGQILASLVMSPPKVGDESYESYCAE--RDGILSSLARRAKTL  429 (533)
Q Consensus       365 ~~~~~~~~~~~l----------~~~---~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l  429 (533)
                      +   .+++++.+          ...   .....+++..+.+++..+|+          ...+.  ++.+.++.++..+++
T Consensus       219 ~---~~~~l~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~----------~l~~~GG~~~i~~~~~~l~~~l  285 (377)
T 3e77_A          219 V---RDDLLGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLE----------WIKNNGGAAAMEKLSSIKSQTI  285 (377)
T ss_dssp             E---ETTSCSCCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHH----------HHHHTTHHHHHHHHHHHHHHHH
T ss_pred             E---cHHHHhhccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHH----------HHHHccCHHHHHHHHHHHHHHH
Confidence            5   33332111          111   11234556666666666663          11222  677888899999999


Q ss_pred             HHHHhcCCCceEecC----CceeEEecccCCCHHHHHHHHhcCCCC----hHHHHHHHHHccceEEEcCCCCCCCCCCce
Q 009517          430 EDAFNSLEGITCNKA----EGAMYLFPRIQLPEKAIKAAEAEKTVP----DAFYCRRLLNATGIVLVPGSGFGQVPGTWH  501 (533)
Q Consensus       430 ~~~L~~~~g~~~~~~----~gg~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~  501 (533)
                      ++.|++++|+.....    ..+..+.+.++.            ...    +..++.. +.++||.+.+|...   .+  .
T Consensus       286 ~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~------------~~~~~~~~~~~l~~-l~~~Gi~~~~g~~~---~g--~  347 (377)
T 3e77_A          286 YEIIDNSQGFYVCPVEPQNRSKMNIPFRIGN------------AKGDDALEKRFLDK-ALELNMLSLKGHRS---VG--G  347 (377)
T ss_dssp             HHHHHTSTTSEECCSCGGGBCSSEEEEEESS------------TTCCHHHHHHHHHH-HHHTTEESCBCCTT---TC--S
T ss_pred             HHHHHhcCCceecCCCHHHcCCcEEEEEcCC------------CCCchhHHHHHHHH-HHHCCcEEeCCCCc---CC--E
Confidence            999999988874331    223222222221            111    1233333 45689999887632   23  6


Q ss_pred             EEEEec--CCcCcHHHHHHHHHHHHHH
Q 009517          502 FRCTIL--PQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       502 iRis~~--~~~e~i~~~~~~l~~~l~~  526 (533)
                      ||+|+.  +++++|+.+++.|++++++
T Consensus       348 iRiS~~~~~t~edId~l~~al~~~~~~  374 (377)
T 3e77_A          348 IRASLYNAVTIEDVQKLAAFMKKFLEM  374 (377)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            999996  7899999999999988765

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=99.73  E-value=1.7e-17  Score=168.47  Aligned_cols=315  Identities=13%  Similarity=0.054  Sum_probs=193.5

Q ss_pred             cCCCCHHHHHHHHHHHhcCCCCCcc-----ccC--CCcccHHHHHHHHHHHHhhcCCCCCC-CCEEE-cCChHHHHHHHH
Q 009517          137 QGLFSADSIERAWQILDQIPGRATG-----AYS--HSQGIKGLRDTIAAGIEARDGFPADP-NDIFL-TDGASPAVHMMM  207 (533)
Q Consensus       137 ~~~~p~~v~~~~~~~~~~~~~~~~~-----~Y~--~~~G~~~lr~aia~~~~~~~g~~~~~-~~i~~-t~G~~~al~~~~  207 (533)
                      |...|++|++++.+.+.+..+....     ...  -..-+.+.|+.++++++      ++. ++|++ |.|+|++++.++
T Consensus        35 pt~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~------~~~~~evif~t~~~T~a~n~ai  108 (386)
T 3qm2_A           35 PAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLN------IPSNYKVLFCHGGGRGQFAGVP  108 (386)
T ss_dssp             SCCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHT------CCTTEEEEEEESCTTHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhC------CCCCceEEEEcCCchHHHHHHH
Confidence            3445899999987766432211111     111  12347788999999986      433 46888 689999999999


Q ss_pred             HHhccCCCCeEEEcCCcCcch--HHHHHHhCCeEEEEecC--CCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCC
Q 009517          208 QLLIRSENDGILCPIPQYPLY--SASIALHGGTLVPYYLD--EATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT  283 (533)
Q Consensus       208 ~~l~~~~gd~Vlv~~p~~~~~--~~~~~~~g~~~~~v~~~--~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPt  283 (533)
                      ..++ .+||+|++..-++...  ...++..| ++..++.+  +. ++.++++.++.++++      ++++|.+++..|.|
T Consensus       109 ~~l~-~~gd~v~~~~~~~~~~~~~~~a~~~G-~v~~v~~~~~~~-G~~~~~~~~~~~l~~------~t~lV~~~h~et~t  179 (386)
T 3qm2_A          109 LNLL-GDKTTADYVDAGYWAASAIKEAKKYC-APQIIDAKITVD-GKRAVKPMREWQLSD------NAAYLHYCPNETID  179 (386)
T ss_dssp             HHHC-TTCCEEEEEESSHHHHHHHHHHTTTS-EEEEEECEEEET-TEEEECCGGGCCCCT------TCSCEEECSEETTT
T ss_pred             Hhcc-CCCCeEEEEeCCHHHHHHHHHHHHhC-CeEEEecCcccC-CCCCCchHHHhhcCC------CCcEEEEECCcCCc
Confidence            9998 7899886544433332  33445568 88888876  22 333677778777765      79999888888899


Q ss_pred             ccC-CCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEE
Q 009517          284 GQV-LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGY  362 (533)
Q Consensus       284 G~~-~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~  362 (533)
                      |++ .+   +++|.     +|+++++|.+++-    |..+ .++    .++     +   +.+.|-.|.+ |++|  +|+
T Consensus       180 G~~i~p---i~~i~-----~g~~~~vDa~qs~----g~~p-idv----~~~-----~---~~~~s~hK~l-GP~G--~g~  231 (386)
T 3qm2_A          180 GIAIDE---TPDFG-----PEVVVTADFSSTI----LSAP-LDV----SRY-----G---VIYAGAQKNI-GPAG--LTL  231 (386)
T ss_dssp             TEECCC---CCCCC-----TTCCEEEECTTTT----TSSC-CCG----GGC-----S---EEEEETTTTT-CCTT--EEE
T ss_pred             CEecCc---hhhhc-----CCCEEEEEccccc----CCCC-CCc----ccc-----C---EEEEeccccc-CCCc--cEE
Confidence            996 66   55553     7999999999874    3222 222    111     2   3457889998 7777  566


Q ss_pred             EEEecCCHHHHHHH----------HHhh---hccccCChHHHHHHHHHcCCCCCCChhHHHHHHH--HHHHHHHHHHHHH
Q 009517          363 MEVTGFSAEVREQI----------YKVA---SVNLCSNISGQILASLVMSPPKVGDESYESYCAE--RDGILSSLARRAK  427 (533)
Q Consensus       363 v~~~~~~~~~~~~l----------~~~~---~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  427 (533)
                      +++   .+++++.+          ....   ....+++..+.+++..+++          ...++  ++.+.++.++.++
T Consensus       232 l~v---~~~~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~----------~~~~~gG~~~i~~~~~~l~~  298 (386)
T 3qm2_A          232 VIV---REDLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFK----------WLKAQGGVAAMHKINQQKAE  298 (386)
T ss_dssp             EEE---EGGGCSCCCTTSCGGGCHHHHHHC-------CCSHHHHHHHHHH----------HHHHHTHHHHHHHHHHHHHH
T ss_pred             EEE---CHHHHhhhcccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHH----------HHHHhcCHHHHHHHHHHHHH
Confidence            665   44432111          1111   1223456666666666653          12232  6778888899999


Q ss_pred             HHHHHHhcCCCce-Ee-cC--CceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEE
Q 009517          428 TLEDAFNSLEGIT-CN-KA--EGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFR  503 (533)
Q Consensus       428 ~l~~~L~~~~g~~-~~-~~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iR  503 (533)
                      ++++.|+++ ++. .. .+  .....+.+.++.+ +           .+..++.. |.++||.+.+|...   .+  .||
T Consensus       299 ~l~~~l~~~-~~~~~~~~~~~rs~~iv~f~~~~~-~-----------~~~~~~~~-L~~~gI~~~~g~~~---~~--~iR  359 (386)
T 3qm2_A          299 LLYGVIDNS-DFYRNDVAQANRSRMNVPFQLADN-T-----------LDKVFLEE-SFAAGLHALKGHRV---VG--GMR  359 (386)
T ss_dssp             HHHHHHHTC-SSEECCBCGGGBCSSEEEEEESSG-G-----------GHHHHHHH-HHHTTEECCBCCTT---TC--SEE
T ss_pred             HHHHHHHHC-CCcccCCCHHHcCceEEEEECCCc-c-----------ccHHHHHH-HHHCCCEEeCCCCC---cC--eEE
Confidence            999999988 652 21 11  1222222223211 1           12333333 67889999887543   22  599


Q ss_pred             EEec--CCcCcHHHHHHHHHHHHHH
Q 009517          504 CTIL--PQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       504 is~~--~~~e~i~~~~~~l~~~l~~  526 (533)
                      +|+.  .++++|+.+++.|+++.++
T Consensus       360 iS~~~~~t~edId~l~~~l~~~~~~  384 (386)
T 3qm2_A          360 ASIYNAMPIEGVKALTDFMIDFERR  384 (386)
T ss_dssp             EECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             EEcCCCCCHHHHHHHHHHHHHHHHh
Confidence            9996  7899999999999888765

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.72  E-value=2.3e-16  Score=158.66  Aligned_cols=311  Identities=14%  Similarity=0.159  Sum_probs=196.8

Q ss_pred             CCHHHHHHHHHHHhcCCCCCcccc--CC-----CcccHHHHHHHHHHHHhhcCCCCC-CCCEEE-cCChHHHHHHHHHHh
Q 009517          140 FSADSIERAWQILDQIPGRATGAY--SH-----SQGIKGLRDTIAAGIEARDGFPAD-PNDIFL-TDGASPAVHMMMQLL  210 (533)
Q Consensus       140 ~p~~v~~~~~~~~~~~~~~~~~~Y--~~-----~~G~~~lr~aia~~~~~~~g~~~~-~~~i~~-t~G~~~al~~~~~~l  210 (533)
                      +|++|++++.+.+.+..+.....|  ..     ..-+.+.|+.++++++      ++ +++|++ |.|+|++++.++..+
T Consensus        16 ~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~------~~~~~~v~f~t~~~T~a~n~~~~~~   89 (361)
T 3m5u_A           16 LPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYE------LNDDYEVLFLQGGASLQFAMIPMNL   89 (361)
T ss_dssp             CCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHT------CCTTEEEEEESSHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhC------CCCCceEEEEcCcHHHHHHHHHHhc
Confidence            389999999887753221111111  11     1124556667777764      43 447887 999999999999998


Q ss_pred             ccCCCCeEE-EcCCcCcc-hHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCC
Q 009517          211 IRSENDGIL-CPIPQYPL-YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLA  288 (533)
Q Consensus       211 ~~~~gd~Vl-v~~p~~~~-~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s  288 (533)
                      .  +||++. +....|.. +...++..|.++..++.+....+.++++. +  |++      ++++|.+++..|.||++.+
T Consensus        90 ~--~~~~~~~i~~~~~~~~~~~~a~~~G~~v~~~~~~~~g~~~~~~~~-~--l~~------~t~lv~~~~~e~~tG~~~~  158 (361)
T 3m5u_A           90 A--LNGVCEYANTGVWTKKAIKEAQILGVNVKTVASSEESNFDHIPRV-E--FSD------NADYAYICSNNTIYGTQYQ  158 (361)
T ss_dssp             C--CSSCEEEEECSHHHHHHHHHHHHTTCCEEEEEECTTTTSCSCCCC-C--CCT------TSSEEEEESEETTTTEECS
T ss_pred             C--CCCeEEEEeCCHHHHHHHHHHHHcCCceEEEecccCcCCCcCChh-h--cCC------CCCEEEEeCCCCCcceeCC
Confidence            7  577653 33333332 33455667999999998876433245555 3  654      7999999988899999876


Q ss_pred             HHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecC
Q 009517          289 EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGF  368 (533)
Q Consensus       289 ~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~  368 (533)
                      .        +++ +|+++++|.+++-    |..+ .++           .+. -+++.|-.|.+ |++|+  |++++   
T Consensus       159 ~--------i~~-~~~~~~vD~~q~~----g~~~-id~-----------~~~-d~~~~s~~K~~-gp~G~--g~l~~---  206 (361)
T 3m5u_A          159 N--------YPK-TKTPLIVDASSDF----FSRK-VDF-----------SNI-ALFYGGVQKNA-GISGL--SCIFI---  206 (361)
T ss_dssp             S--------CCC-CSSCEEEECGGGT----TSSC-CCC-----------TTE-EEEEEETTTTS-SCTTC--EEEEE---
T ss_pred             c--------ccc-cCCEEEEEccccc----CCCC-CCc-----------ccC-CEEEEechhcc-CCCcc--EEEEE---
Confidence            2        233 4999999999874    2222 111           111 25677889999 88875  66666   


Q ss_pred             CHHHHHHHHH-----------h--hh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 009517          369 SAEVREQIYK-----------V--AS-VNLCSNISGQILASLVMSPPKVGDESYESYCAE--RDGILSSLARRAKTLEDA  432 (533)
Q Consensus       369 ~~~~~~~l~~-----------~--~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~  432 (533)
                      .+++.+.+.+           .  .. ...+++..+.+++..+|+          ...++  ++.+.++.++.++++++.
T Consensus       207 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~----------~l~~~gG~~~i~~~~~~l~~~l~~~  276 (361)
T 3m5u_A          207 RKDMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMD----------WLLNQGGLDKVHEKNSQKATMLYEC  276 (361)
T ss_dssp             EHHHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHH----------HHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHH----------HHHHccCHHHHHHHHHHHHHHHHHH
Confidence            7888766643           1  01 223456666666666653          11222  577788889999999999


Q ss_pred             HhcCCCc-eEec-C--CceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec-
Q 009517          433 FNSLEGI-TCNK-A--EGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-  507 (533)
Q Consensus       433 L~~~~g~-~~~~-~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-  507 (533)
                      |++++|+ .... +  .....+.+.++.-.+           -+..+. ..|.++||.+.+|...   .+  .||+|+. 
T Consensus       277 L~~~~g~~~~~~~~~~rs~~ivsf~~~~~~~-----------~~~~~~-~~L~~~gI~~~~g~~~---~g--~iRiS~~~  339 (361)
T 3m5u_A          277 IDLSNGFYKGHADKKDRSLMNVSFNIAKNKD-----------LEPLFV-KEAEEAGMIGLKGHRI---LG--GIRASIYN  339 (361)
T ss_dssp             HHTSTTSEEESSCGGGBCSSEEEEEESSCTT-----------HHHHHH-HHHHHTTEECCBCCTT---TC--SEEEECCT
T ss_pred             HHHCCCeeeccCCHHHcCCeEEEEECCCchh-----------hhHHHH-HHHHHCCCEEecCCCc---cC--eEEEEccC
Confidence            9999666 4432 1  111122222221000           022333 5667889999887542   22  5999996 


Q ss_pred             -CCcCcHHHHHHHHHHHHHH
Q 009517          508 -PQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       508 -~~~e~i~~~~~~l~~~l~~  526 (533)
                       .++++|+.+++.|+++.++
T Consensus       340 ~~t~edId~l~~al~~~~~~  359 (361)
T 3m5u_A          340 ALNLDQVKTLCEFMKEFQGK  359 (361)
T ss_dssp             TSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHh
Confidence             7899999999999887765

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=99.62  E-value=1.3e-13  Score=138.73  Aligned_cols=320  Identities=12%  Similarity=0.066  Sum_probs=188.2

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccC--C-CCeEEEcCCcCcchHHHHHHhCCeEEEEecCC
Q 009517          170 KGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS--E-NDGILCPIPQYPLYSASIALHGGTLVPYYLDE  246 (533)
Q Consensus       170 ~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~--~-gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~  246 (533)
                      ..|.+.++.-+-+..|++. ....++++|+|.++..++.+.+..  | +|+|+++..++.....++...|++++.++...
T Consensus       115 ~~ltn~l~ld~L~~~G~~~-~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~Gl~Pv~V~p~~  193 (501)
T 3hl2_A          115 NKITNSLVLDIIKLAGVHT-VANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVL  193 (501)
T ss_dssp             HHHHHHHHHHHHHHTTCTT-CCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECEEE
T ss_pred             HHHHHHHHHHHHHHcCCCC-CCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHHHcCCeEEEEeeee
Confidence            3444444443334457552 235889999997776666666522  2 49999999999999999999999999887632


Q ss_pred             -CCCCCCCHHHHHHHHHHHHhcCCCeeEEEEe-CCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcc
Q 009517          247 -ATGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (533)
Q Consensus       247 -~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~-~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~  324 (533)
                       ++.+++|++.++++|+++   +.+..++++. .+.|..|++-+   +++|+++|++||+++++|++|......    ..
T Consensus       194 d~~~~~id~e~le~aI~e~---ga~~i~~V~~Ttt~y~p~~~dd---I~eIaeIch~~gIpllVDeAhGah~~~----~~  263 (501)
T 3hl2_A          194 EGDELRTDLKAVEAKVQEL---GPDCILCIHSTTSCFAPRVPDR---LEELAVICANYDIPHIVNNAYGVQSSK----CM  263 (501)
T ss_dssp             ETTEEEECHHHHHHHHHHH---CGGGEEEEEEECSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTCTTCHH----HH
T ss_pred             cccccCCCHHHHHHHHHhc---CCCcEEEEEecCCCCCCccccc---HHHHHHHHHHcCCeEEEeCcchhhhhh----hh
Confidence             225789999999999986   2233344444 55665556555   999999999999999999999763210    01


Q ss_pred             cHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhc-cccCChHHHHHHHHHcCCCCC
Q 009517          325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASV-NLCSNISGQILASLVMSPPKV  403 (533)
Q Consensus       325 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~a~~~~L~~~~~  403 (533)
                      .+..-...++  ..|   +++.|..|++. ++ +..|.+..  .++++++.+...... .++.+.+...++...+     
T Consensus       264 ~lp~sA~~~G--rAD---~vVqS~HK~ll-vp-IGG~ii~~--~d~e~l~~~~~~yPGr~S~Spsldl~~tLL~l-----  329 (501)
T 3hl2_A          264 HLIQQGARVG--RID---AFVQSLDKNFM-VP-VGGAIIAG--FNDSFIQEISKMYPGRASASPSLDVLITLLSL-----  329 (501)
T ss_dssp             HHHHHHHHHS--CCC---EEEEEHHHHHC-CC-SSCEEEEE--SCHHHHHHHHHTSCSCBCSHHHHHHHHHHHHH-----
T ss_pred             hhHHHHHhcC--CCc---EEEecccccce-ee-cCceEEEe--CCHHHHHHHHHhCCCCCCCcHHHHHHHHHHHH-----
Confidence            1111111221  145   67999999873 22 23333333  477777776544321 1222222233333332     


Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCceEec---CCceeEEecccCCCHHHHHHHHhcCCCChHHHHH
Q 009517          404 GDESYESYCAERDGILSSLARRAKTLEDAFNSL---EGITCNK---AEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCR  477 (533)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~g~~~~~---~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (533)
                             ..+.++++.++..++.++|.+.|+++   -|-++..   ....+-+.++- +...         .......+-
T Consensus       330 -------Gr~Gy~~ll~e~~ela~~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~-~~~~---------~~~~~t~~g  392 (501)
T 3hl2_A          330 -------GSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKT-LDEH---------RDKAVTQLG  392 (501)
T ss_dssp             -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCBCCCTTCSSEEEEECTT-SCTT---------TSCHHHHHH
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcCCCCCceeEEEeccc-cccc---------ccccHHHHH
Confidence                   22334566666667777777777764   1323322   22233333210 1000         001122222


Q ss_pred             HHHHccce---E-EEcCC----------CCCCCC---CCceEEEEec--CCcCcHHHHHHHHHHHHHHHHHHh
Q 009517          478 RLLNATGI---V-LVPGS----------GFGQVP---GTWHFRCTIL--PQEDKIPAIVTRLTDFHKNFMDKF  531 (533)
Q Consensus       478 ~ll~~~gV---~-v~pg~----------~f~~~~---g~~~iRis~~--~~~e~i~~~~~~l~~~l~~~~~~~  531 (533)
                      .+|-.++|   - |.+|.          .||...   ...|+-++.+  .+.+||+.++++|++++++++++.
T Consensus       393 s~Lf~r~vsG~Rvv~~~~~~~i~g~~f~~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~~~~~  465 (501)
T 3hl2_A          393 SMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKER  465 (501)
T ss_dssp             HHHHHTTCCSCEEECTTCCEEETTEEESSTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHhcCCCcceeecCCCceEECCeeecCcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence            33433444   2 34555          565421   1237777775  899999999999999999987653

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=99.54  E-value=3.6e-12  Score=130.11  Aligned_cols=244  Identities=11%  Similarity=0.049  Sum_probs=151.2

Q ss_pred             ccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH-HHHHHHHHHhcc--CCCCeEEEcCCcCcchHHHHHHhCCeEEEEec
Q 009517          168 GIKGLRDTIAAGIEARDGFPADPNDIFLTDGAS-PAVHMMMQLLIR--SENDGILCPIPQYPLYSASIALHGGTLVPYYL  244 (533)
Q Consensus       168 G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~-~al~~~~~~l~~--~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~  244 (533)
                      +...+.+.+..++.+..|.+- ....++++|+| .++..++.++..  .+++.|+++..+|.....++...|+.++.++.
T Consensus        95 ~~~~~e~~~~~~~~~~lGlp~-~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~Gl~p~~v~~  173 (450)
T 3bc8_A           95 LLNKITNSLVLNVIKLAGVHS-VASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIEN  173 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHTCTT-CCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECC
T ss_pred             HHHHHHHHHHHHHHHhCCCCC-CceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHHHcCCeeEEEEe
Confidence            355677788888877777432 23458888887 555555555431  13789999999999999999999999888865


Q ss_pred             CC-CCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCC-CCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCC
Q 009517          245 DE-ATGWGLETSEVKKQLEAAKAKGITVRALVVINP-GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKK  322 (533)
Q Consensus       245 ~~-~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p-~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~  322 (533)
                      .. +..+.+|++.|+++|++..   .+.+++++.+| .+.+|.+-+   +++|+++|++||+++++|++|.....     
T Consensus       174 ~~~~~~~~id~~~le~aI~~~~---~~~~~~Vv~t~t~~g~g~~dd---l~~Ia~ia~~~gi~l~VD~A~G~~~~-----  242 (450)
T 3bc8_A          174 VLEGDELRTDLKAVEAKIQELG---PEHILCLHSTTACFAPRVPDR---LEELAVICANYDIPHVVNNAYGLQSS-----  242 (450)
T ss_dssp             EEETTEEECCHHHHHHHHHHHC---GGGEEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCH-----
T ss_pred             eecCccCCcCHHHHHHHHHhcC---CCCEEEEEEECCcCCCceecC---HHHHHHHHHHCCCeEEEECCCchhhh-----
Confidence            32 2356899999999998852   12345555655 455677766   99999999999999999999976321     


Q ss_pred             cccHHHHHhhcCC-CCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhccccCChHHHHHHHHHcCCC
Q 009517          323 FHSFKKVSRSMGY-GEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPP  401 (533)
Q Consensus       323 ~~~~~~~~~~~~~-~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~~L~~~  401 (533)
                      +  ...+...... ...|   .++.|..|++..  -...+++..  .+++.++++....... .....+..+...++.  
T Consensus       243 ~--~~~l~~~a~~~~~AD---~~v~S~HK~l~a--~~~~~~l~~--rd~~~~~~~~~~~~g~-~s~SpsL~l~~~l~~--  310 (450)
T 3bc8_A          243 K--CMHLIQQGARVGRID---AFVQSLDKNFMV--PVGGAIIAG--FNEPFIQDISKMYPGR-ASASPSLDVLITLLS--  310 (450)
T ss_dssp             H--HHHHHHHHHHHSCCC---EEEEEHHHHHSC--CSSCEEEEE--SCHHHHHHHHHHSCSC-BCSHHHHHHHHHHHH--
T ss_pred             h--hHhHHHHHhcccCCC---EEEECCccCCCc--hhccEEEEe--cCHHHHHHHHHHhhcC-CcccHHHHHHHHHHH--
Confidence            0  1111111100 0235   568899998743  344555554  3677776665433111 111222222222221  


Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CceEec
Q 009517          402 KVGDESYESYCAERDGILSSLARRAKTLEDAFNSLE---GITCNK  443 (533)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---g~~~~~  443 (533)
                              .-.+.++++.++..++.+++++.|++++   |..+..
T Consensus       311 --------~G~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~  347 (450)
T 3bc8_A          311 --------LGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQ  347 (450)
T ss_dssp             --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCC
T ss_pred             --------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecC
Confidence                    1122234444455666677777776665   665543

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=99.53  E-value=2.7e-12  Score=128.75  Aligned_cols=332  Identities=13%  Similarity=0.074  Sum_probs=194.4

Q ss_pred             CHHHHHHHHHHHhcCCCCC---ccccCCCcccHHHHHHHHHHHHhhcCCCCCCC--CEEEcCChHHHHHHHHHHhccCCC
Q 009517          141 SADSIERAWQILDQIPGRA---TGAYSHSQGIKGLRDTIAAGIEARDGFPADPN--DIFLTDGASPAVHMMMQLLIRSEN  215 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~---~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~--~i~~t~G~~~al~~~~~~l~~~~g  215 (533)
                      .+.|.++.-..+.+....+   ...|+-..-+.++.....+...+.||.+...-  ||-.-+ ++.|...++.+++ +||
T Consensus        67 S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~S-Gs~AN~avy~All-~PG  144 (490)
T 3ou5_A           67 SRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYS-GSPANLAVYTALL-QPH  144 (490)
T ss_dssp             CHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSS-HHHHHHHHHHHHC-C-C
T ss_pred             CHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCC-HHHHHHHHHHHHc-CCC
Confidence            5777777766665533211   11233344345566666667777778443211  455544 5588888888898 899


Q ss_pred             CeEEEcCCcCcchHHH--------HHHhCC--eEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCcc
Q 009517          216 DGILCPIPQYPLYSAS--------IALHGG--TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ  285 (533)
Q Consensus       216 d~Vlv~~p~~~~~~~~--------~~~~g~--~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~  285 (533)
                      |+|+..+....+|..-        ....|.  +.++|+++++ +..+|.+.+++..+..     ++|+|+.-.-.+|-  
T Consensus       145 D~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~-t~~IDyd~~~~~A~~~-----kPklIi~G~SaY~r--  216 (490)
T 3ou5_A          145 DRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPK-TGLIDYNQLALTARLF-----RPRLIIAGTSAYAR--  216 (490)
T ss_dssp             CCEECBC----------------------------CBCEETT-TTEECHHHHHHHHHHH-----CCSEEEECCSSCCS--
T ss_pred             CEEEecccCCCCcccccccCCCcccccccccccccccccCCC-CCcccHHHHHHHHhhc-----CCCeEEECCccCcc--
Confidence            9999999887776421        122222  4556666654 5579999999999987     89988866555553  


Q ss_pred             CCCHHHHHHHHHHHHHcCCEEEEcccc-ccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEE
Q 009517          286 VLAEENQRAIVDFCKKEGLVLLADEVY-QENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYME  364 (533)
Q Consensus       286 ~~s~~~l~~i~~l~~~~~~~lI~De~y-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~  364 (533)
                      .++   ++++.++|++.|.++++|-++ .+++-+|.  +++...        +.|   |+..|..|+|   .|-|.|.|.
T Consensus       217 ~id---~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~--~psP~~--------~AD---vVTtTTHKTL---rGPrGG~Il  277 (490)
T 3ou5_A          217 LID---YARMREVCDEVKAHLLADMAHISGLVAAKV--IPSPFK--------HAD---IVTTTTHKTL---RGARSGLIF  277 (490)
T ss_dssp             CCC---HHHHHHHHHHHTCEEEEECGGGHHHHHTTS--SCCGGG--------TCS---EEEEESSSTT---CSCSCEEEE
T ss_pred             ccC---HHHHHHHHhhcccEEEechhhhhhhhcccc--cCCccc--------cce---EEeccccccc---cCCCceEEE
Confidence            333   899999999999999999998 55555443  333222        245   6788999998   488999988


Q ss_pred             EecC-----CH-------HHHHHHHHhhh-ccccCChHHHHHH-HHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 009517          365 VTGF-----SA-------EVREQIYKVAS-VNLCSNISGQILA-SLVMSPPKVGDESYESYCAERDGILSSLARRAKTLE  430 (533)
Q Consensus       365 ~~~~-----~~-------~~~~~l~~~~~-~~~~~~~~~q~a~-~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  430 (533)
                      +...     ++       ++.+.+.+.-- ...+.+..-..|+ +.++.         +....+.+.-.++..++.+.|.
T Consensus       278 ~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~---------Ea~~p~fk~Ya~qVv~NAkaLA  348 (490)
T 3ou5_A          278 YRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALK---------QACTPMFREYSLQVLKNARAMA  348 (490)
T ss_dssp             EECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHH---------HHHSHHHHHHHHHHHHHHHHHH
T ss_pred             eccccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHH---------HHHhHhHHHHHHHHHHHHHHHH
Confidence            7210     00       45566655432 2222222222222 22221         1122334555566778888999


Q ss_pred             HHHhcCCCceEecC-CceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEE----cCCCCCCCCCCceEEEE
Q 009517          431 DAFNSLEGITCNKA-EGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLV----PGSGFGQVPGTWHFRCT  505 (533)
Q Consensus       431 ~~L~~~~g~~~~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~----pg~~f~~~~g~~~iRis  505 (533)
                      +.|.+. |++++.. .....+++++..          .+++  -..+.++|++.||.+.    |+..-  +-....|||.
T Consensus       349 ~~L~~~-G~~vvsGgTdnHlvLvDl~~----------~g~t--G~~ae~~Le~agItvNkN~iP~D~s--p~~~SGiRiG  413 (490)
T 3ou5_A          349 DALLER-GYSLVSGGTDNHLVLVDLRP----------KGLD--GARAERVLELVSITANKNTCPGDRS--AITPGGLRLG  413 (490)
T ss_dssp             HHHHHT-TCEEGGGSCSSSEEEEECGG----------GTCC--HHHHHHHHHHTTEECEEECCTTCCC--SSSCSEEEEE
T ss_pred             HHHHhC-CCeeecCCCCceEEEEeccc----------cCCC--HHHHHHHHHHcCcEECCCCCCCCCC--CCCCCeeEEC
Confidence            999888 9988753 333445555541          1121  2235578899999875    44311  1112369999


Q ss_pred             e------cCCcCcHHHHHHHHHHHHH
Q 009517          506 I------LPQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       506 ~------~~~~e~i~~~~~~l~~~l~  525 (533)
                      .      +..+++++++.+-|.+++.
T Consensus       414 Tpa~TtRG~~e~dm~~IA~~I~~~l~  439 (490)
T 3ou5_A          414 APALTSRQFREDDFRRVVDFIDEGVN  439 (490)
T ss_dssp             SHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            8      2677889999999988775

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=84.85  E-value=5.3  Score=37.48  Aligned_cols=101  Identities=20%  Similarity=0.195  Sum_probs=61.4

Q ss_pred             CCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCC
Q 009517          191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT  270 (533)
Q Consensus       191 ~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~  270 (533)
                      .-+++|.|++..-..+.+.|. ..|-.|++..-.-.......+..|.+...+..|-.     |.+++++.++...+.-.+
T Consensus        30 KvalVTGas~GIG~aiA~~la-~~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~-----~~~~v~~~~~~~~~~~G~  103 (273)
T 4fgs_A           30 KIAVITGATSGIGLAAAKRFV-AEGARVFITGRRKDVLDAAIAEIGGGAVGIQADSA-----NLAELDRLYEKVKAEAGR  103 (273)
T ss_dssp             CEEEEESCSSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHCTTCEEEECCTT-----CHHHHHHHHHHHHHHHSC
T ss_pred             CEEEEeCcCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHcCCCeEEEEecCC-----CHHHHHHHHHHHHHHcCC
Confidence            345555555444455555565 67888887665444455566677888888877643     677777777664332224


Q ss_pred             eeEEEEeCC-CCCCc--cCCCHHHHHHHHHH
Q 009517          271 VRALVVINP-GNPTG--QVLAEENQRAIVDF  298 (533)
Q Consensus       271 ~~~iil~~p-~NPtG--~~~s~~~l~~i~~l  298 (533)
                      ... +++|. .++.+  ..++.++|+++.++
T Consensus       104 iDi-LVNNAG~~~~~~~~~~~~e~w~~~~~v  133 (273)
T 4fgs_A          104 IDV-LFVNAGGGSMLPLGEVTEEQYDDTFDR  133 (273)
T ss_dssp             EEE-EEECCCCCCCCCTTSCCHHHHHHHHHH
T ss_pred             CCE-EEECCCCCCCCChhhccHHHHHHHHHH
Confidence            554 45555 33333  25688889888775

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=82.04  E-value=7.2  Score=35.70  Aligned_cols=103  Identities=16%  Similarity=0.066  Sum_probs=59.5

Q ss_pred             CCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCC
Q 009517          190 PNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGI  269 (533)
Q Consensus       190 ~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~  269 (533)
                      ...+++|.|+...-..+.+.|. ..|-+|++..-.-..........+.++..+..|-.     |.+.+++.++...+...
T Consensus         6 gk~vlVTGas~gIG~a~a~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~-----~~~~v~~~~~~~~~~~g   79 (247)
T 3rwb_A            6 GKTALVTGAAQGIGKAIAARLA-ADGATVIVSDINAEGAKAAAASIGKKARAIAADIS-----DPGSVKALFAEIQALTG   79 (247)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHH-HTTCEEEEECSCHHHHHHHHHHHCTTEEECCCCTT-----CHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHhCCceEEEEcCCC-----CHHHHHHHHHHHHHHCC
Confidence            3456666655555555666666 67888887665444445555556777777776633     67787777765433222


Q ss_pred             CeeEEEEeCCCCCCc--cCCCHHHHHHHHHH
Q 009517          270 TVRALVVINPGNPTG--QVLAEENQRAIVDF  298 (533)
Q Consensus       270 ~~~~iil~~p~NPtG--~~~s~~~l~~i~~l  298 (533)
                      +...++-+--..+.+  ...+.++|+++.+.
T Consensus        80 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~  110 (247)
T 3rwb_A           80 GIDILVNNASIVPFVAWDDVDLDHWRKIIDV  110 (247)
T ss_dssp             CCSEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence            455554332222322  24577777776553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	533
d1j32a_	388	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho	8e-46
d1b5pa_	382	c.67.1.1 (A:) Aspartate aminotransferase, AAT {The	6e-43
d1xi9a_	395	c.67.1.1 (A:) Putative alanine aminotransferase {P	7e-42
d1gdea_	388	c.67.1.1 (A:) Aromatic aminoacid aminotransferase,	5e-40
d1iaya_	428	c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy	1e-28
d1m7ya_	431	c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy	2e-28
d1w7la_	418	c.67.1.1 (A:) Kynurenine--oxoglutarate transaminas	6e-28
d3tata_	397	c.67.1.1 (A:) Aromatic aminoacid aminotransferase,	1e-27
d2hoxa1	425	c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativ	3e-27
d2r5ea1	418	c.67.1.1 (A:12-429) Kynurenine--oxoglutarate trans	5e-27
d1ajsa_	412	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig	2e-22
d1wsta1	403	c.67.1.1 (A:13-415) Multiple substrate aminotransf	2e-22
d1yaaa_	412	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Bak	3e-22
d2q7wa1	396	c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT	5e-22
d7aata_	401	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chi	2e-21
d1o4sa_	375	c.67.1.1 (A:) Aspartate aminotransferase, AAT {The	3e-20
d2ay1a_	394	c.67.1.1 (A:) Aromatic aminoacid aminotransferase,	4e-20
d1v2da_	368	c.67.1.1 (A:) Glutamine aminotransferase {Thermus	6e-19
d1vp4a_	420	c.67.1.1 (A:) Putative aminotransferase TM1131 {Th	4e-17
d1u08a_	382	c.67.1.1 (A:) Putative methionine aminotransferase	9e-16
d2gb3a1	389	c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotog	1e-15
d1bw0a_	412	c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Try	4e-15
d1c7na_	394	c.67.1.3 (A:) Cystalysin {Treponema denticola [Tax	1e-13
d1d2fa_	361	c.67.1.3 (A:) Modulator in mal gene expression, Ma	9e-13
d2aeua1	366	c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Ar	4e-08
d1ax4a_	465	c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas	2e-04
d2v1pa1	467	c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop	0.001
d1fg7a_	354	c.67.1.1 (A:) Histidinol-phosphate aminotransferas	0.002

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

 Score =  163 bits (412), Expect = 8e-46
 Identities = 83/366 (22%), Positives = 142/366 (38%), Gaps = 40/366 (10%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y  + G   LR+ IA  ++  +G     ++I +T+G   ++  +M  +I    D ++ P 
Sbjct: 63  YGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIE-PGDEVIIPA 121

Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
           P +  Y   + L  GT V       T + +   ++++ +          + LV   P NP
Sbjct: 122 PFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKT------KLLVFNTPSNP 175

Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL 342
           TG V   +  RAI     + GL +L+DE+Y E +   + +  S    S      E+ +  
Sbjct: 176 TGMVYTPDEVRAIAQVAVEAGLWVLSDEIY-EKILYDDAQHLSIGAASPEA--YERSVVC 232

Query: 343 VSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPK 402
             F   +K  Y   G R G++   G    V+                 Q           
Sbjct: 233 SGF---AK-TYAMTGWRVGFL--AGPVPLVKAATKIQGHSTSNVCTFAQYG--------- 277

Query: 403 VGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIK 462
               +YE+       +L++ A R + + DA N++ G+ C K +GA Y+FP I        
Sbjct: 278 -AIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSI-------- 328

Query: 463 AAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTD 522
              A+       +C  LL+   +  VPG+ FG        R +     D I   + RL  
Sbjct: 329 ---AKTGRSSLDFCSELLDQHQVATVPGAAFG---ADDCIRLSYATDLDTIKRGMERLEK 382

Query: 523 FHKNFM 528
           F    +
Sbjct: 383 FLHGIL 388

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

 Score =  155 bits (392), Expect = 6e-43
 Identities = 72/361 (19%), Positives = 128/361 (35%), Gaps = 43/361 (11%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y+   GI  LR+ +A      +G    P +  +T G S A+  + Q ++    D ++   
Sbjct: 64  YAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILD-PGDEVIVLS 122

Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
           P +  Y   +   GG +V        G+  +   V++ +          +ALVV +P NP
Sbjct: 123 PYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPR------TKALVVNSPNNP 176

Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL 342
           TG V  +E   A+     +    L++DE+Y+  +Y  E         S      E  +++
Sbjct: 177 TGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGE-------HFSPGRVAPEHTLTV 229

Query: 343 VSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPK 402
                 +K  +   G R GY        EV + +  V+  +  S  +             
Sbjct: 230 NGA---AKA-FAMTGWRIGYACG---PKEVIKAMASVSRQSTTSPDTIA------QWATL 276

Query: 403 VGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIK 462
               + E+  A  +    +  RR   L +   +L G+   +  GA Y+            
Sbjct: 277 EALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL-GLKAVRPSGAFYVLMDT-------- 327

Query: 463 AAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTD 522
                   PD       L   G+ +VPG+ F       H R +    E+ +   + R   
Sbjct: 328 ----SPIAPDEVRAAERLLEAGVAVVPGTDFA---AFGHVRLSYATSEENLRKALERFAR 380

Query: 523 F 523
            
Sbjct: 381 V 381

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} Length = 395

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

 Score =  152 bits (385), Expect = 7e-42
 Identities = 110/465 (23%), Positives = 189/465 (40%), Gaps = 81/465 (17%)

Query: 64  KVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLA 123
           + L  EYA+R ++V  A+ L+++           +++  NIG+P     QP    +E  A
Sbjct: 7   RALSVEYAIR-DVVLPARELEKKGI---------KVIRLNIGDPVKFDFQPPEHMKE--A 54

Query: 124 LCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEAR 183
            C     +                               Y  S+G+  LR  I    + +
Sbjct: 55  YCKA---IKEGHNY-------------------------YGDSEGLPELRKAIVEREKRK 86

Query: 184 DGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYY 243
           +G    P+D+ +T   + A+ ++    +    D IL P P YP Y+  +  +GG  V Y 
Sbjct: 87  NGVDITPDDVRVTAAVTEALQLIFGA-LLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYR 145

Query: 244 LDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEG 303
             E   W  +  +++K++          +A+ VINP NPTG +  ++    I++   +  
Sbjct: 146 TIEEEDWQPDIDDIRKKITDRT------KAIAVINPNNPTGALYDKKTLEEILNIAGEYE 199

Query: 304 LVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYM 363
           + +++DE+Y    Y  E                 KD+ ++    +SK Y    G R GYM
Sbjct: 200 IPVISDEIYDLMTYEGEHISPGSL---------TKDVPVIVMNGLSKVY-FATGWRLGYM 249

Query: 364 EVTGFS---AEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILS 420
                    +EVRE I ++A + LC N   Q  A   ++ P    +  + Y  +      
Sbjct: 250 YFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGP---MDYLKEYMKK------ 300

Query: 421 SLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLL 480
            L  R   +    N + GI+  K +GA Y+FP+I++               D  +   +L
Sbjct: 301 -LKERRDYIYKRLNEIPGISTTKPQGAFYIFPKIEVG----------PWKNDKEFVLDVL 349

Query: 481 NATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHK 525
           +   ++ V GSGFG+  G  HFR   LP  + +   + R   F K
Sbjct: 350 HNAHVLFVHGSGFGE-YGAGHFRAVFLPPIEILEEAMDRFEKFMK 393

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score =  147 bits (371), Expect = 5e-40
 Identities = 78/361 (21%), Positives = 148/361 (40%), Gaps = 37/361 (10%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y  + G+  LR+ IA  ++ ++G  ADP    +    +    +M       + + +L P 
Sbjct: 58  YGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPT 117

Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
           P +  Y+ ++ L GG  V     E   + L   E+KK +          RAL++ +P NP
Sbjct: 118 PAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDK------TRALIINSPCNP 171

Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL 342
           TG VL +++   I DF  +  L++++DEVY E+    + + +S   +    G  E+ I++
Sbjct: 172 TGAVLTKKDLEEIADFVVEHDLIVISDEVY-EHFIYDDARHYSIASL---DGMFERTITV 227

Query: 343 VSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPK 402
             F   SK  +   G R G++    +  E   +     +    + I      +L      
Sbjct: 228 NGF---SKT-FAMTGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKAL------ 277

Query: 403 VGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIK 462
                 +    +    +     R + L     +  G+   K +GA Y+FPRI   +  + 
Sbjct: 278 -----KDERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPKGAFYIFPRI--RDTGLT 330

Query: 463 AAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTD 522
           + +         +   +L    + +VPGS FG+  G  + R +     +K+   + R+  
Sbjct: 331 SKK---------FSELMLKEARVAVVPGSAFGK-AGEGYVRISYATAYEKLEEAMDRMER 380

Query: 523 F 523
            
Sbjct: 381 V 381

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} Length = 428

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

 Score =  115 bits (289), Expect = 1e-28
 Identities = 63/365 (17%), Positives = 123/365 (33%), Gaps = 24/365 (6%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGF--PADPNDIFLTDGASPAVHMMMQLLIRSENDGILC 220
           +    G+   R  IA  +E   G     DP  + +  GA+ A   ++  L     D  L 
Sbjct: 79  FQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLAD-PGDAFLV 137

Query: 221 PIPQYPLYSASIALHGG-TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP 279
           P P YP ++  +    G  L+P + + +  + + +  VK+  E A+   I V+ L++ NP
Sbjct: 138 PSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNP 197

Query: 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKD 339
            NP G  L ++  ++++ F  +  + L+ DE+Y   V+   +     + +          
Sbjct: 198 SNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNK 257

Query: 340 ISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMS 399
             +    S+SK       + G              ++     V+  +      + S    
Sbjct: 258 DLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSFGLVSTQTQYFLAAMLSDEKF 317

Query: 400 PPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEK 459
                 ES            + L               GI C K    ++ +  ++    
Sbjct: 318 VDNFLRESAMRLGKRHKHFTNGLEV------------VGIKCLKNNAGLFCWMDLR---- 361

Query: 460 AIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTI-LPQEDKIPAIVT 518
                       +    R ++N   + + PGS F        FR       +  +   + 
Sbjct: 362 --PLLRESTFDSEMSLWRVIINDVKLNVSPGSSFEC-QEPGWFRVCFANMDDGTVDIALA 418

Query: 519 RLTDF 523
           R+  F
Sbjct: 419 RIRRF 423

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} Length = 431

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

 Score =  115 bits (287), Expect = 2e-28
 Identities = 64/372 (17%), Positives = 139/372 (37%), Gaps = 28/372 (7%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGF--PADPNDIFLTDGASPAVHMMMQLLIRSENDGILC 220
           +    G+   +  +   +    G     DPN + LT GA+ A    +  L     + +L 
Sbjct: 80  FQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLAD-PGEAVLI 138

Query: 221 PIPQYPLYSASIALHGGTLV-PYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINP 279
           P P YP +   +    G  + P +   + G+ +  + +++  + A+ + + V+ ++V NP
Sbjct: 139 PTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNP 198

Query: 280 GNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG--- 336
            NP G  +       ++ F + +G+ L++DE+Y    +     F S  +V +        
Sbjct: 199 SNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSP-SFISVMEVLKDRNCDENS 257

Query: 337 EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASL 396
           E    +    S+SK   G  G R G   +      V     K++S  L S+ +  +L+++
Sbjct: 258 EVWQRVHVVYSLSK-DLGLPGFRVGA--IYSNDDMVVAAATKMSSFGLVSSQTQHLLSAM 314

Query: 397 VMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQL 456
           +       +   E++   +      ++   K          GI+C      ++ +  ++ 
Sbjct: 315 LSDKKLTKNYIAENHKRLKQRQKKLVSGLQK---------SGISCLNGNAGLFCWVDMR- 364

Query: 457 PEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTI-LPQEDKIPA 515
                    +     +    ++++    + + PGS          FR       E  +  
Sbjct: 365 -----HLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHC-TEPGWFRVCFANLPERTLDL 418

Query: 516 IVTRLTDFHKNF 527
            + RL  F   +
Sbjct: 419 AMQRLKAFVGEY 430

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} Length = 418

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (283), Expect = 6e-28
 Identities = 67/422 (15%), Positives = 133/422 (31%), Gaps = 29/422 (6%)

Query: 114 PITFFREVLALCDHPSILDRSETQGLFSADS--IERAWQILDQIPGRATGAYSHSQGIKG 171
               + E + L     +++  +    F      +E     +          Y+ + G   
Sbjct: 11  DYNPWVEFVKLASEHDVVNLGQGFPDFPPPDFAVEAFQHAVSG--DFMLNQYTKTFGYPP 68

Query: 172 LRDTIAAGIEARDGFPADPND-IFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA 230
           L   +A+      G   DP   + +T G   A+    Q L+  E D ++   P +  Y  
Sbjct: 69  LTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVD-EGDEVIIIEPFFDCYEP 127

Query: 231 SIALHGGTLVPYYLDEA---TGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP-TGQV 286
              + GG  V   L       G    +S  +        K  +    +V+N  N   G+V
Sbjct: 128 MTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGKV 187

Query: 287 LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQ 346
            + E    +   C++  +V + DEVYQ  VY    +  S   +           S     
Sbjct: 188 FSREELELVASLCQQHDVVCITDEVYQWMVY-DGHQHISIASLPGMWERTLTIGS----- 241

Query: 347 SVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDE 406
             +   +   G + G++       +    +++ +  +  +     +  S           
Sbjct: 242 --AGKTFSATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQP 299

Query: 407 SYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRI-QLPEKAIKAAE 465
           S       +        +R +          G+     +G+ +L   I     K      
Sbjct: 300 SSYFVQFPQAM------QRCRDHMIRSLQSVGLKPLIPQGSYFLITDISDFKRKMPDLPG 353

Query: 466 AEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTW----HFRCTILPQEDKIPAIVTRLT 521
           A     D  + + ++   G+V +P S F  VP       + R   +  E  + A+  +L 
Sbjct: 354 AVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQAMDEKLR 413

Query: 522 DF 523
            +
Sbjct: 414 KW 415

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} Length = 397

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

 Score =  112 bits (280), Expect = 1e-27
 Identities = 53/355 (14%), Positives = 102/355 (28%), Gaps = 27/355 (7%)

Query: 143 DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA 202
            ++  A   L+  P  A+  Y   +G+   R  IA  +   D        +        +
Sbjct: 47  QAVAEAEARLNAQPHGASL-YLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGS 105

Query: 203 VHMMMQLLIRS---ENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKK 259
             + +            G+    P +  + A  A  G  +  Y   +    G        
Sbjct: 106 GALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNG---VRFND 162

Query: 260 QLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVP 319
            L   K        L+     NPTG  L  +   A+++  K   L+   D  YQ      
Sbjct: 163 LLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGM 222

Query: 320 EKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV 379
           E+  ++ + +      G   +   SF       +   G+R G + V    AE   ++   
Sbjct: 223 EEDAYAIRAI---ASAGLPALVSNSFSK----IFSLYGERVGGLSVMCEDAEAAGRVLGQ 275

Query: 380 ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGI 439
               +  N S        +    + D   E+  A     +  +  R   +      ++ +
Sbjct: 276 LKATVRRNYSSPPNFGAQVVAAVLND---EALKASWLAEVEEMRTRILAMRQEL--VKVL 330

Query: 440 TCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFG 494
           +    E                +   +   +  A    RL    G+ L+      
Sbjct: 331 STEMPERNFDYLLN-------QRGMFSYTGLSAAQ-VDRLREEFGVYLIASGRMC 377

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} Length = 425

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

 Score =  111 bits (279), Expect = 3e-27
 Identities = 46/360 (12%), Positives = 93/360 (25%), Gaps = 51/360 (14%)

Query: 172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-------DGILCPIPQ 224
           L  TI    E      A    I    G +  +H ++  L  +           ++   P 
Sbjct: 105 LEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPF 164

Query: 225 YPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTG 284
           YP++             +  + A                           +V +P NP G
Sbjct: 165 YPVFREQTKYFDKKGYVWAGNAA------------NYVNVSNPE--QYIEMVTSPNNPEG 210

Query: 285 QVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVS 344
            +              +  ++     +Y    Y P   +   K          K    + 
Sbjct: 211 LL--------------RHAVIKGCKSIYDMVYYWPH--YTPIK---------YKADEDIL 245

Query: 345 FQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVG 404
             ++SK + G  G R G+  +   S       Y   +       +      ++     + 
Sbjct: 246 LFTMSK-FTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMV 304

Query: 405 DESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNK-AEGAMYLFPRIQLPEKAIKA 463
                +           L  R   +    +  +  +  +  +     + R   P     A
Sbjct: 305 KTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYA 364

Query: 464 AEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDF 523
               +   D   C +      I    G GF       + R +++  +D    ++  L D 
Sbjct: 365 WVKCEWEEDKD-CYQTFQNGRINTQNGVGFEASSR--YVRLSLIKTQDDFDQLMYYLKDM 421

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} Length = 418

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

 Score =  111 bits (276), Expect = 5e-27
 Identities = 55/426 (12%), Positives = 131/426 (30%), Gaps = 25/426 (5%)

Query: 107 PQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADS--IERAWQILDQIPGRATGAYS 164
           P+       + + E + L      L+  +    + A    +       +     A   Y+
Sbjct: 5   PKRYQGSTKSVWVEYIQLAAQYKPLNLGQGFPDYHAPKYALNALAAAANSPDPLANQ-YT 63

Query: 165 HSQGIKGLRDTIAAGIEARDGFPADPND-IFLTDGASPAVHMMMQLLIRSENDGILCPIP 223
              G   L   ++           +P   + +T GA  A++  +Q  +   ++ I+   P
Sbjct: 64  RGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIE-P 122

Query: 224 QYPLYSASIALHGGTLVPYYL-DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
            +  Y   +   GG      L    TG  + +++        +A       +++IN  + 
Sbjct: 123 FFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHN 182

Query: 283 -TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDIS 341
             G+V+       + + CKK  ++ ++DEVY+  V+ P +                    
Sbjct: 183 PLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWER------- 235

Query: 342 LVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPP 401
                  +   +   G + G+            Q+     V  C+    + +A    +  
Sbjct: 236 -TITIGSAGKTFSLTGWKIGWAYGPEAL-LKNLQMVHQNCVYTCATPIQEAIAVGFETEL 293

Query: 402 KVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAI 461
           K        + +             +    +F +  G+     +G  ++       +  +
Sbjct: 294 KRLKSPECYFNSISG-----ELMAKRDYMASFLAEVGMNPTVPQGGYFMVADWSSLDSKV 348

Query: 462 KAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTW----HFRCTILPQEDKIPAIV 517
              +      D  + + +  + G+  +P S F   P         R     +++ +    
Sbjct: 349 DLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENLQKAA 408

Query: 518 TRLTDF 523
             L  +
Sbjct: 409 EILRKW 414

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} Length = 412

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

 Score = 97.7 bits (242), Expect = 2e-22
 Identities = 41/363 (11%), Positives = 89/363 (24%), Gaps = 36/363 (9%)

Query: 143 DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDG--FPADPNDIFLTDGAS 200
             + +  Q +          Y    G+   R   +      D             + G +
Sbjct: 51  PVVRKVEQRIANNSSLNHE-YLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGT 109

Query: 201 PAVHMMMQLLIR------SENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLET 254
            A+ +  + L R      +++  +    P +  ++      G   +  Y    T      
Sbjct: 110 GALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLD 169

Query: 255 SEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQE 314
             ++  L   +        ++     NPTG     E  + I    K+  L    D  YQ 
Sbjct: 170 --LQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQG 227

Query: 315 NVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVRE 374
                  +  ++          E   +    ++                E       + +
Sbjct: 228 FAS-GNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQ 286

Query: 375 QIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFN 434
               V          G  + +  +S P    E +  +      +   +      L     
Sbjct: 287 MQKIVRVTWSNPPAQGARIVARTLSDP----ELFHEWTGNVKTMADRILSMRSELRARLE 342

Query: 435 SLEG---ITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGS 491
           +L+          +  M+ F  +                 +      L+N   I L+P  
Sbjct: 343 ALKTPGTWNHITDQIGMFSFTGL-----------------NPKQVEYLINQKHIYLLPSG 385

Query: 492 GFG 494
              
Sbjct: 386 RIN 388

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} Length = 403

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

 Score = 97.0 bits (240), Expect = 2e-22
 Identities = 69/420 (16%), Positives = 138/420 (32%), Gaps = 45/420 (10%)

Query: 119 REVLALCDHPSILDRSETQG-----LFSADSIERAW-QILDQIPGRATGAYSHSQGIKGL 172
           RE+L L +   ++  +   G      F  ++I++   ++L++   +A   Y  ++G   L
Sbjct: 20  RELLKLVETSDVISLA--GGLPAPETFPVETIKKIAVEVLEEHADKALQ-YGTTKGFTPL 76

Query: 173 RDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASI 232
           R  +A  +E R   P    +I    G+  A+ ++ ++ +    D I+   P Y     + 
Sbjct: 77  RLALARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFLN-PGDPIVVEAPTYLAAIQAF 135

Query: 233 ALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQ 292
             +    +   LD+         E  ++L     +   V  +       P G  ++ + +
Sbjct: 136 KYYDPEFISIPLDDKGMRVDLLEEKLEELRKQGKRVKIVYTVSTFQN--PAGVTMSVDRR 193

Query: 293 RAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGY 352
           + +++   +   +++ D  Y E  Y  E            + + +    ++   + SK  
Sbjct: 194 KKLLELANEYDFLIVEDGPYSELRYSGEPT--------PPIKHFDDYGRVIYLGTFSKIL 245

Query: 353 YGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYC 412
               G R G++        +  ++            +     +         DE      
Sbjct: 246 A--PGFRIGWVA---AHPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYLDEHIPKII 300

Query: 413 AERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPD 472
                         + LE+     EG+   K EG M++     LPE             D
Sbjct: 301 EFYKPR---RDAMLEALEEYMP--EGVEWTKPEGGMFVRVT--LPEGI-----------D 342

Query: 473 AFYCRRLLNATGIVLVPGSGFGQVP-GTWHFRCTI-LPQEDKIPAIVTRLTDFHKNFMDK 530
                    A G+  VPG  F          R       E+ I   V RL +  K  M +
Sbjct: 343 TKLMMERAVAKGVAYVPGEAFFVHRDKKNTMRLNFTYVPEETIREGVRRLAETIKEEMKR 402

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} Length = 412

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

 Score = 96.6 bits (239), Expect = 3e-22
 Identities = 47/363 (12%), Positives = 87/363 (23%), Gaps = 35/363 (9%)

Query: 143 DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA 202
            S++ A +++          Y    G+  L    A  I          + +      S  
Sbjct: 50  PSVKAAEKLIHNDSSYNHE-YLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGT 108

Query: 203 VHMMMQLLI---RSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKK 259
             + +          +  +    P +  + A     G     Y         L+ +    
Sbjct: 109 GALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLN 168

Query: 260 QLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVP 319
            ++ A    I    ++     NPTG     E    IVD    +  + L D  YQ      
Sbjct: 169 AIQKAPEGSI---FVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGD 225

Query: 320 EKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV 379
                ++                V             G+R G   +        + I   
Sbjct: 226 -LDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGM--YGERVGCFHLALTKQAQNKTIKPA 282

Query: 380 ASVNLCSNISGQILASLVMSPPKV-----GDESYESYCAERDGILSSLARRAKTLEDAFN 434
            +  L   I  ++          V       E  E +  +   + S + +    L D   
Sbjct: 283 VTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLV 342

Query: 435 SLEG---ITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGS 491
            L           +  M+ F  +                      +RL     + LV   
Sbjct: 343 KLGTPGNWDHIVNQCGMFSFTGL----------------TPQM-VKRLEETHAVYLVASG 385

Query: 492 GFG 494
              
Sbjct: 386 RAS 388

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} Length = 396

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

 Score = 95.8 bits (237), Expect = 5e-22
 Identities = 50/357 (14%), Positives = 98/357 (27%), Gaps = 38/357 (10%)

Query: 143 DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIF--LTDGAS 200
            S+++A Q L +     T  Y    GI          +  +     +        T G +
Sbjct: 47  TSVKKAEQYLLENET--TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGT 104

Query: 201 PAVHMMMQLLIRSENDG-ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKK 259
            A+ +    L ++ +   +    P +P + +     G  +  Y   +A    L+   +  
Sbjct: 105 GALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALIN 164

Query: 260 QLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVP 319
            L  A+A       L      NPTG     E  + +     ++G + L D  YQ      
Sbjct: 165 SLNEAQAG---DVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGL 221

Query: 320 EKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV 379
           E+     +  +          S     S + G Y E       +     + +      K 
Sbjct: 222 EEDAEGLRAFAAMHKELIVASSY----SKNFGLYNERVGACTLVAADSETVDRAFSQMKA 277

Query: 380 ASVNL--CSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLE 437
           A           G  + + ++S   +     +     R      + R  +   +      
Sbjct: 278 AIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQ----RIQRMRQLFVNTLQEKG 333

Query: 438 G---ITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGS 491
                +    +  M+ F  +                       RL    G+  V   
Sbjct: 334 ANRDFSFIIKQNGMFSFSGL-----------------TKEQVLRLREEFGVYAVASG 373

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} Length = 401

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

 Score = 94.3 bits (233), Expect = 2e-21
 Identities = 42/357 (11%), Positives = 89/357 (24%), Gaps = 36/357 (10%)

Query: 143 DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA 202
           + + +A  ++          Y    G+       A      +             G S  
Sbjct: 49  NCVRKAEAMIAAKK--MDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGT 106

Query: 203 VHMMMQLLIR----SENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVK 258
             + +           +  +  P P +  ++      G  L  Y   +     L+ +   
Sbjct: 107 GSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAM 166

Query: 259 KQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYV 318
           + +     K      L+     NPTG    +E  + +    KK  L+   D  YQ     
Sbjct: 167 EDISKIPEK---SIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASG 223

Query: 319 PEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYK 378
              +       +      +    ++S         G  G+R G   V    AE  +++  
Sbjct: 224 DINRDAW----ALRHFIEQGIDVVLSQSYAKN--MGLYGERAGAFTVICRDAEEAKRVES 277

Query: 379 VASVNLCSNISGQILASLVMSPPKVGDESY-ESYCAERDGILSSLARRAKTLEDAFNSLE 437
              + +    S   +    ++   +      + +  E  G+   +      L        
Sbjct: 278 QLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEG 337

Query: 438 G---ITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGS 491
                     +  M+ F  +                       RL     I +    
Sbjct: 338 SSHNWQHITDQIGMFCFTGL----------------KPEQ-VERLTKEFSIYMTKDG 377

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} Length = 375

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

 Score = 90.1 bits (222), Expect = 3e-20
 Identities = 78/364 (21%), Positives = 138/364 (37%), Gaps = 49/364 (13%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           Y+  +GI  LR+ IA  I  R      P+ + +T+GA  A+      L+    D ++   
Sbjct: 61  YTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLD-PGDEVIVFS 119

Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
           P +  Y   I L GGT+       +  +     E  + L   K K +     ++ +P NP
Sbjct: 120 PVWVSYIPQIILAGGTVNVVETFMSKNFQPSL-EEVEGLLVGKTKAV-----LINSPNNP 173

Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL 342
           TG V   E    +V   KK    +++DEVY   VY        F  +       ++ + +
Sbjct: 174 TGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVY-----TDEFTSILDVSEGFDRIVYI 228

Query: 343 VSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPK 402
             F S S   +   G R GY+  +   A    +I    +  + +                
Sbjct: 229 NGF-SKS---HSMTGWRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAA---------- 274

Query: 403 VGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIK 462
                 ++   +   ++ +   R   + +    + G+   + EGA YLF +++       
Sbjct: 275 -----LKALEVDNSYMVQTFKERKNFVVERLKKM-GVKFVEPEGAFYLFFKVR------- 321

Query: 463 AAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTD 522
                    D  +C RLL    + LVPGS F + PG    R +     +++   + R+ D
Sbjct: 322 -------GDDVKFCERLLEEKKVALVPGSAFLK-PG--FVRLSFATSIERLTEALDRIED 371

Query: 523 FHKN 526
           F  +
Sbjct: 372 FLNS 375

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} Length = 394

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

 Score = 90.4 bits (223), Expect = 4e-20
 Identities = 53/353 (15%), Positives = 98/353 (27%), Gaps = 33/353 (9%)

Query: 143 DSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA 202
            ++  A Q + +     T  Y+   G    +  +   I            +    G    
Sbjct: 47  RAVHAAEQRMLETET--TKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGAL 104

Query: 203 VHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLE 262
              +    + + +  +    P +P + + +   G  +  Y   +A   G++   +K  L 
Sbjct: 105 RQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLA 164

Query: 263 AAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKK 322
           AAK        L+     NPTG  L  +    I    +K G + L D  YQ         
Sbjct: 165 AAKKG---DMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGL--- 218

Query: 323 FHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASV 382
               ++ +         I  V   +     +G   +R G +      A  RE      + 
Sbjct: 219 ----EEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCLLALCADAATRELAQGAMAF 274

Query: 383 NLCSNISGQILASLVMSPPKVGDESY-ESYCAERDGILSSLARRAKTLEDAFNSLEG--- 438
                 S        +    +        + AE + + S + R  + L      L G   
Sbjct: 275 LNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDR 334

Query: 439 ITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGS 491
                    M+                           +R+    GI +V  S
Sbjct: 335 FGFVAEHRGMFSRLGA-----------------TPEQVKRIKEEFGIYMVGDS 370

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} Length = 368

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

 Score = 86.3 bits (212), Expect = 6e-19
 Identities = 73/409 (17%), Positives = 130/409 (31%), Gaps = 55/409 (13%)

Query: 116 TFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDT 175
           + F  +  L      ++    QG  S        + + +  GR    Y+   G+  LR+ 
Sbjct: 13  SIFPRMSGLAQRLGAVNLG--QGFPSNPPPPFLLEAVRRALGRQDQ-YAPPAGLPALREA 69

Query: 176 IAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALH 235
           +A      + F  +P  + +T GA+ A+++++Q  +    D ++   P + +Y     L 
Sbjct: 70  LA------EEFAVEPESVVVTSGATEALYVLLQS-LVGPGDEVVVLEPFFDVYLPDAFLA 122

Query: 236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAI 295
           G       LD                   KA     RAL++  P NPTG V  E    AI
Sbjct: 123 GAKARLVRLDLTPEGFRLDLS-----ALEKALTPRTRALLLNTPMNPTGLVFGERELEAI 177

Query: 296 VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGE 355
               +   L L++DEVY E  Y    +        R+   G            +      
Sbjct: 178 ARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGS-----------AGKRLEA 226

Query: 356 CGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAER 415
            G R G++            + +  S +  +           +                 
Sbjct: 227 TGYRVGWIVGPKEFMPRLAGMRQWTSFSAPTP----------LQAGVAEALKLARREGFY 276

Query: 416 DGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFY 475
           + +     RR   L     ++ G+     EG  +L   +                   + 
Sbjct: 277 EALREGYRRRRDLLAGGLRAM-GLRVYVPEGTYFLMAEL-----------------PGWD 318

Query: 476 CRRLLNATGIVLVPGSGFG-QVPGTWHFRCTILPQEDKIPAIVTRLTDF 523
             RL+    + L+P S F  + P    FR      E+++   + RL   
Sbjct: 319 AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGRV 367

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} Length = 420

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

 Score = 81.4 bits (199), Expect = 4e-17
 Identities = 66/421 (15%), Positives = 128/421 (30%), Gaps = 38/421 (9%)

Query: 114 PITFFREVLALCDHPSILDRSETQG-----LFSADSIERAWQILDQIPGRATGAYSHSQG 168
             +  RE+L        +      G      F    +    + + +     T  YS ++G
Sbjct: 24  KSSIIREILKFAADKDAISFG--GGVPDPETFPRKELAEIAKEIIEKEYHYTLQYSTTEG 81

Query: 169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLY 228
              L+  I   +E   G      D  +    S     ++  L   +    +   P Y   
Sbjct: 82  DPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGA 141

Query: 229 SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLA 288
             +   +    V   L++             + +            VV N  NP G   +
Sbjct: 142 INAFRQYLANFVVVPLEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTS 201

Query: 289 EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSV 348
            E ++A+V+  +K  L ++ D+ Y    Y  E     FK                     
Sbjct: 202 LEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVV----------LLN 251

Query: 349 SKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESY 408
           +       G R G +  +      +E I K+      +++    +   + +      +  
Sbjct: 252 TFSKVLAPGLRIGMVAGS------KEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLL 305

Query: 409 ESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEK 468
           E      +            LE+ F+ + G+   K+EG ++++    LPE          
Sbjct: 306 EQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLT--LPEGF-------- 355

Query: 469 TVPDAFYCRRLLNATGIVLVPGSGFGQVP-GTWHFRCTI-LPQEDKIPAIVTRLTDFHKN 526
              D +          +  VPG  F      +   R +  LP ++KI   + RL +    
Sbjct: 356 ---DTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLREVVLE 412

Query: 527 F 527
           +
Sbjct: 413 Y 413

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} Length = 382

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

 Score = 76.7 bits (187), Expect = 9e-16
 Identities = 69/417 (16%), Positives = 136/417 (32%), Gaps = 44/417 (10%)

Query: 107 PQS-LGQQPITFFREVLALCDHPSILDRSETQGLFSA-DSIERAWQILDQIPGRATGAYS 164
           PQS L Q   T F ++ AL      ++ S+    F     ++    +   +   A   Y+
Sbjct: 4   PQSKLPQLGTTIFTQMSALAQQHQAINLSQGFPDFDGPRYLQER--LAHHVAQGANQ-YA 60

Query: 165 HSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQ 224
              G++ LR+ IA   E   G+  D +        +          +    D ++C  P 
Sbjct: 61  PMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPS 120

Query: 225 YPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTG 284
           Y  Y+ +IAL GG +    L                 +   A       LV++N  +   
Sbjct: 121 YDSYAPAIALSGGIVKRMALQPPHFR--------VDWQEFAALLSERTRLVILNTPHNPS 172

Query: 285 QVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVS 344
             + ++   A +        + +  +   E++   ++   S     +             
Sbjct: 173 ATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLR-------ERAV 225

Query: 345 FQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVG 404
             S     Y   G + GY       +    ++++  + +  +  +   LA ++ + P+  
Sbjct: 226 AVSSFGKTYHMTGWKVGYCVAPAPISAEIRKVHQYLTFS-VNTPAQLALADMLRAEPEHY 284

Query: 405 DESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAA 464
               + Y  +RD ++++L                +     EG  +L              
Sbjct: 285 LALPDFYRQKRDILVNALNE------------SRLEILPCEGTYFLLVDY---------- 322

Query: 465 EAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVP-GTWHFRCTILPQEDKIPAIVTRL 520
            A  T+ D  +C+ L    G+  +P S F   P      R     +E  + A   RL
Sbjct: 323 SAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERL 379

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} Length = 389

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

 Score = 76.4 bits (186), Expect = 1e-15
 Identities = 68/372 (18%), Positives = 118/372 (31%), Gaps = 51/372 (13%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           YSHS GI  LR+  A+  + R      P ++ L         +    +I +  D IL   
Sbjct: 60  YSHSAGIWELREAFASYYKRRQRVDVKPENV-LVTNGGSEAILFSFAVIANPGDEILVLE 118

Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
           P Y  Y+A   + G  L+P       G+ +  +      E  K   ++       NP NP
Sbjct: 119 PFYANYNAFAKIAGVKLIPVTRRMEEGFAIPQNLESFINERTKGIVLS-------NPCNP 171

Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL 342
           TG V  ++  R +V+  ++ GL L+ DEVY E V+  E       +  + +         
Sbjct: 172 TGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVV--------- 222

Query: 343 VSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPK 402
                     +  CG R G +                  +               +    
Sbjct: 223 --VIDSVSKKFSACGARVGCLITRNEELISHAMKLAQGRLAPP------------LLEQI 268

Query: 403 VGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIK 462
                     +  D +  +   R +T+             K  GA Y+   + + +    
Sbjct: 269 GSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAELPVED---- 324

Query: 463 AAEAEKTVPDAFYCRRLLN-----ATGIVLVPGSGFGQVPGTW--HFRCTILPQEDKIPA 515
                       + R +L          ++ P  GF   PG      R   + ++D +  
Sbjct: 325 ---------AEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSR 375

Query: 516 IVTRLTDFHKNF 527
            +  L +  K F
Sbjct: 376 AIDVLMEGLKMF 387

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} Length = 412

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 74.9 bits (182), Expect = 4e-15
 Identities = 61/369 (16%), Positives = 119/369 (32%), Gaps = 34/369 (9%)

Query: 163 YSHSQGIKGLRDTIAA------GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND 216
           Y  + G    R+ +A         +         +++ L  G S  + M +  +  + + 
Sbjct: 68  YFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDY 127

Query: 217 GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVV 276
            ++         +     +G  +  Y       W  +  E+++       K    + L+V
Sbjct: 128 ALVPQPGFPHYETV-CKAYGIGMHFYNCRPENDWEADLDEIRRL------KDDKTKLLIV 180

Query: 277 INPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYG 336
            NP NP G   + ++   IV   ++  L L +DE+Y   V+  +    +F  V+      
Sbjct: 181 TNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTV 240

Query: 337 EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASL 396
            + I   +    +K      G R G++             +      +   + G      
Sbjct: 241 PRVILGGT----AKNL-VVPGWRLGWLLYVDPHG--NGPSFLEGLKRVGMLVCGPCTVVQ 293

Query: 397 VMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQL 456
                 + +   E        I  S       + +      G+      GAMYL  RI L
Sbjct: 294 AALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECI----GLAPTMPRGAMYLMSRIDL 349

Query: 457 PEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAI 516
            +      + E       +  +LL    + ++PG+ F   PG    R T     +     
Sbjct: 350 EKYRDIKTDVE-------FFEKLLEEENVQVLPGTIFHA-PG--FTRLTTTRPVEVYREA 399

Query: 517 VTRLTDFHK 525
           V R+  F +
Sbjct: 400 VERIKAFCQ 408

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} Length = 394

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

 Score = 70.2 bits (170), Expect = 1e-13
 Identities = 42/366 (11%), Positives = 104/366 (28%), Gaps = 33/366 (9%)

Query: 161 GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC 220
               ++   +  + T+   ++ R  +    + I  T G  PAV   ++   +  +  I+ 
Sbjct: 60  TVLGYTGPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIII 119

Query: 221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPG 280
               YP + A        +    L++   + ++  +++K  +    K     AL+  +P 
Sbjct: 120 TPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNK-----ALLFCSPH 174

Query: 281 NPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDI 340
           NP G+V  ++  + I D   K  L+L +DE++ + +    +         +         
Sbjct: 175 NPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFT 234

Query: 341 SLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSP 400
           +     +++         +   +      +          ++   +           +  
Sbjct: 235 APSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDG 294

Query: 401 PKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKA 460
                +  +    +                    +   I     EG    +         
Sbjct: 295 CIKVIDKNQRIVKDFF----------------EVNHPEIKAPLIEGTYLQWIDF------ 332

Query: 461 IKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRL 520
                    +        +++   I    G  FG   G    R  +      I   + RL
Sbjct: 333 -----RALKMDHKAMEEFMIHKAQIFFDEGYIFGD-GGIGFERINLAAPSSVIQESLERL 386

Query: 521 TDFHKN 526
               K+
Sbjct: 387 NKALKD 392

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} Length = 361

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

 Score = 67.6 bits (163), Expect = 9e-13
 Identities = 35/361 (9%), Positives = 91/361 (25%), Gaps = 36/361 (9%)

Query: 163 YSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPI 222
           YS  +  +     IA     +     D   +         V  +++    +    ++   
Sbjct: 32  YSRWKNDE-FLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHTP 90

Query: 223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP 282
                Y A        +      +A GW  +  +++  L   + K      ++++     
Sbjct: 91  AYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECK------IMLLCSPQN 144

Query: 283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISL 342
               +   ++  I+    +   V +  +    ++   E+    +  V+R         S 
Sbjct: 145 PTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGS- 203

Query: 343 VSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPK 402
                     +      G Y  +   S+             L S     + A +      
Sbjct: 204 --------KSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQG 255

Query: 403 VGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIK 462
                      + +             +    +   +     +     +  +        
Sbjct: 256 APWLDALRIYLKDNLTY--------IADKMNAAFPELNWQIPQSTYLAWLDL-------- 299

Query: 463 AAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTD 522
                  + D    + L+    + ++PG  +G+  G    R        K+   V  L +
Sbjct: 300 ---RPLNIDDNALQKALIEQEKVAIMPGYTYGE-EGRGFVRLNAGCPRSKLEKGVAGLIN 355

Query: 523 F 523
            
Sbjct: 356 A 356

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 366

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 53.0 bits (126), Expect = 4e-08
 Identities = 40/350 (11%), Positives = 90/350 (25%), Gaps = 54/350 (15%)

Query: 178 AGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGG 237
            G++   G   D       +  S A+   +  L   +    L  +P +P    S  +   
Sbjct: 58  YGLKHLGGDEND--KCVGFNRTSSAILATILALKPKKVIHYLPELPGHPSIERSCKIVNA 115

Query: 238 TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD 297
                          E+ +V + L            ++  +  +    V+  EN + +++
Sbjct: 116 KYF------------ESDKVGEILNKIDKD---TLVIITGSTMDLK--VIELENFKKVIN 158

Query: 298 FCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG 357
             K +  ++  D+     V +                + +     +    V         
Sbjct: 159 TAKNKEAIVFVDDASGARVRL---------------LFNQPPALKLGADLVVTSTDKLM- 202

Query: 358 KRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDG 417
             G    +     E+ ++IY   +          +LA +  +      E           
Sbjct: 203 -EGPRGGLLAGKKELVDKIYIEGT-KFGLEAQPPLLAGIYRALKNFNLERIRKAFERA-- 258

Query: 418 ILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCR 477
                     +  +  N       +         P   + ++  K               
Sbjct: 259 -----KNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDTINIKKLIEI-GF 312

Query: 478 RLLNATGIVLVPGSGFGQVPGTWHFRCTI-------LPQEDKIPAIVTRL 520
            LL   GI+ +  +G      +   R  +       +     I AIV  +
Sbjct: 313 NLLKNYGIITITVAGMP--GASKSLRIDLTSRDAERIDDNYIIKAIVESI 360

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

 Score = 41.9 bits (97), Expect = 2e-04
 Identities = 35/268 (13%), Positives = 85/268 (31%), Gaps = 25/268 (9%)

Query: 162 AYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR------SEN 215
           AY+ S+    L+D         + F  D   I        A +++  +L++         
Sbjct: 70  AYAGSRNYYDLKDKAK------ELFNYD--YIIPAHQGRGAENILFPVLLKYKQKEGKAK 121

Query: 216 DGILCPIPQYPLYSASIALHGGTLVPYYLDEATG-------WGLETSEVKKQLEAAKAKG 268
           + +      +   +A + L+G   +    ++A          G    +  K+  A     
Sbjct: 122 NPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGAD 181

Query: 269 ITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVY-QENVYVPEKKFHSFK 327
             V  +  +   +  GQ ++  N + + +  K+ G+ ++ D     EN Y  + +   +K
Sbjct: 182 NIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYK 241

Query: 328 KVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSN 387
             + ++     D+   +               GG +     + E+     +         
Sbjct: 242 --NATIKEVIFDMYKYADALTMSAKKDPLLNIGGLV-AIRDNEEIFTLARQRCVPMEGFV 298

Query: 388 ISGQILASLVMSPPKVGDESYESYCAER 415
             G +    + +  +  +E  E      
Sbjct: 299 TYGGLAGRDMAAMVQGLEEGTEEEYLHY 326

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

 Score = 39.5 bits (91), Expect = 0.001
 Identities = 36/273 (13%), Positives = 82/273 (30%), Gaps = 27/273 (9%)

Query: 162 AYSHSQGIKGLRDTIAAGIEARDGFPADP----NDIFLTDGASPAVHMMMQLLIRSENDG 217
           A+S S+    L +++      +   P         I++       +    Q      +  
Sbjct: 69  AFSGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYI----PVLIKKREQEKGLDRSKM 124

Query: 218 ILCPIPQYPLYSASIALHGGTLVPYYLDEAT-----GWGLETSEVKKQLEAAKAKGITVR 272
           +      +        ++G T+   Y+ EA             +++      +  G    
Sbjct: 125 VAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNV 184

Query: 273 ALVVINPGNPT--GQVLAEENQRAIVDFCKKEGLVLLADEV-YQENVY-----VPEKKFH 324
             +V    + +  GQ ++  N +A+    KK  + ++ D   + EN Y       E K  
Sbjct: 185 PYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDW 244

Query: 325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYM--EVTGFSAEVREQIYKVASV 382
           + ++++R      K   +++  S  K      G               E R         
Sbjct: 245 TIEQITRETY---KYADMLAM-SAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGF 300

Query: 383 NLCSNISGQILASLVMSPPKVGDESYESYCAER 415
                + G  +  L +      +  + +Y   +
Sbjct: 301 PTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQ 333

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} Length = 354

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 10/79 (12%), Positives = 21/79 (26%), Gaps = 18/79 (22%)

Query: 433 FNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSG 492
              +  +         Y+  R                   +    + L   GI+L   + 
Sbjct: 281 LKEIPCVEQVFDSETNYILAR----------------FKASSAVFKSLWDQGIILRDQNK 324

Query: 493 FGQVPGTWHFRCTILPQED 511
              + G    R T+  +E+
Sbjct: 325 QPSLSG--CLRITVGTREE 341

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	533
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	100.0
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	100.0
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	100.0
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	100.0
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	100.0
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	100.0
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	100.0
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	100.0
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	100.0
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	100.0
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	100.0
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	100.0
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	100.0
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	100.0
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	100.0
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	100.0
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	100.0
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	100.0
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	100.0
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	100.0
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	100.0
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	100.0
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	100.0
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	100.0
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	100.0
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	100.0
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	100.0
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	99.96
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	99.94
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	99.93
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	99.92
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	99.92
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	99.91
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	99.91
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	99.91
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	99.9
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	99.89
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	99.89
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	99.89
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	99.89
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	99.88
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.87
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	99.86
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	99.86
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	99.85
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	99.85
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	99.85
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	99.83
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	99.82
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	99.81
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	99.81
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	99.8
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	99.79
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	99.79
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	99.79
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	99.78
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	99.78
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	99.75
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	99.75
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	99.75
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	99.75
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	99.74
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.74
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.74
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	99.73
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	99.73
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	99.72
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	99.71
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	99.71
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	99.7
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	99.7
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	99.68
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	99.68
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	99.65
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	99.64
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	99.64
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	99.63
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	99.57
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	99.54
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	99.51
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	99.51
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	99.41
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	99.24
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	99.15
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	98.96
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	98.94
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	83.58
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	83.04
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	82.88
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	82.81
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	82.65
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	81.9
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	81.55
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	80.83

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=100.00  E-value=1.4e-60  Score=487.63  Aligned_cols=384  Identities=23%  Similarity=0.373  Sum_probs=338.5

Q ss_pred             cCcccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCC
Q 009517           61 LNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLF  140 (533)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~  140 (533)
                      +++++..++++++.++.++++++++.|++         +|||++|+|++                      ++       
T Consensus         3 ~~~~~~~~~~s~~~~i~~~a~~~~~~g~~---------vi~l~~G~p~~----------------------~~-------   44 (388)
T d1j32a_           3 LAARVESVSPSMTLIIDAKAKAMKAEGID---------VCSFSAGEPDF----------------------NT-------   44 (388)
T ss_dssp             CCHHHHTSCCCSSTTTHHHHHHHHTTTCC---------CEECCCSSCSS----------------------CC-------
T ss_pred             hhhHhhcCCcCHHHHHHHHHHHHHHCCCC---------eEECCCCCCCC----------------------CC-------
Confidence            56788899999999999999999998887         99999999986                      33       


Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      |+.+++++.+.+.+    ....|++..|.++||+++|+++.+.+|..+++++|++|+|+++++..++++++ ++||+|++
T Consensus        45 p~~v~~a~~~~~~~----~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~-~~gd~Vlv  119 (388)
T d1j32a_          45 PKHIVEAAKAALEQ----GKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMI-EPGDEVII  119 (388)
T ss_dssp             CHHHHHHHHHHHHT----TCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEE
T ss_pred             CHHHHHHHHHHHhc----CCCCCCCCCCCHHHHHHHHHHHHHhcccCCCCceEEEcCCHHHHHHHHHHHHh-CCCCEEEE
Confidence            78899999888876    36789999999999999999999999999999999999999999999999998 89999999


Q ss_pred             cCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHH
Q 009517          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (533)
Q Consensus       221 ~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~  300 (533)
                      ++|+|++|...++..|++++.++...+++|.+|++++++++++      +++++++++||||||.++|.+++++|+++|+
T Consensus       120 ~~P~y~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~~~~~~------~~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~  193 (388)
T d1j32a_         120 PAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITP------KTKLLVFNTPSNPTGMVYTPDEVRAIAQVAV  193 (388)
T ss_dssp             ESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhCCC------CCeEEEECCCCCCCCcccchhhhhhhhcccc
Confidence            9999999999999999999999998888899999999999876      7999999999999999999999999999999


Q ss_pred             HcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhh
Q 009517          301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA  380 (533)
Q Consensus       301 ~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~  380 (533)
                      ++|++||+||+|..+.|++. ++.++.......     ..++|++.||||+| ++||+|+||+++   ++++++.+.+..
T Consensus       194 ~~~~~iI~De~Y~~~~~~~~-~~~s~~~~~~~~-----~~~~i~~~S~SK~~-~~~GlRvG~~~~---~~~~~~~~~~~~  263 (388)
T d1j32a_         194 EAGLWVLSDEIYEKILYDDA-QHLSIGAASPEA-----YERSVVCSGFAKTY-AMTGWRVGFLAG---PVPLVKAATKIQ  263 (388)
T ss_dssp             HHTCEEEEECTTTTCBCTTC-CCCCGGGSCHHH-----HHTEEEEEESTTTT-TCTTTCCEEEEC---CHHHHHHHHHHH
T ss_pred             cCCeEEEchhhhhcccccCC-CCCCHHHhCccc-----ccceeEecCChhhh-hcchhHeEEEEE---CHHHHHHHHHhh
Confidence            99999999999999999754 455554432221     13589999999999 899999999998   999999888776


Q ss_pred             h-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHH
Q 009517          381 S-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEK  459 (533)
Q Consensus       381 ~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~  459 (533)
                      . ...+++...|.++...+....          ++++++++.++++++.+.+.|++++|+.+..|+||||+|++++..  
T Consensus       264 ~~~~~~~~~~~q~a~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~gg~~l~~~l~~~--  331 (388)
T d1j32a_         264 GHSTSNVCTFAQYGAIAAYENSQ----------DCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSIAKT--  331 (388)
T ss_dssp             HTTTCSCCHHHHHHHHHHHHSCS----------HHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCBTTEECCBCGGG--
T ss_pred             hhccccccHHHHHHHhhcccchH----------HHHHHHHHHHHHHHHHHHHHHHhCCCCEecCCCceEEEEEECCCC--
Confidence            5 567888999998888876433          567788899999999999999998899999999999999766521  


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHHHH
Q 009517          460 AIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~  527 (533)
                               ..++.+++.++++++||.+.||..|+. ++  +|||+++.++++|++++++|+++++.+
T Consensus       332 ---------~~~~~~~~~~ll~~~gV~v~pG~~F~~-~~--~~Rls~~~~~e~l~~al~rl~~~l~~l  387 (388)
T d1j32a_         332 ---------GRSSLDFCSELLDQHQVATVPGAAFGA-DD--CIRLSYATDLDTIKRGMERLEKFLHGI  387 (388)
T ss_dssp             ---------TCCHHHHHHHHHHHHCEECEEGGGGTC-TT--BEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred             ---------CCCHHHHHHHHHHhCCEEEEeccccCC-CC--eEEEEEeCCHHHHHHHHHHHHHHHHHh
Confidence                     234667788889999999999999984 33  999999988899999999999999875

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.5e-59  Score=479.34  Aligned_cols=380  Identities=22%  Similarity=0.362  Sum_probs=327.1

Q ss_pred             cCcCcccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccC
Q 009517           59 DSLNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQG  138 (533)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~  138 (533)
                      ..+++++.+++++++.++.+++++++..|+|         +|+|++|+|++                      ++     
T Consensus         2 ~~~~~r~~~~~~s~~~~i~~~a~~~~~~G~~---------vi~l~~g~p~~----------------------~~-----   45 (382)
T d1b5pa_           2 RGLSRRVQAMKPSATVAVNAKALELRRQGVD---------LVALTAGEPDF----------------------DT-----   45 (382)
T ss_dssp             CCCCHHHHHCCCCHHHHHHHHHHHHHHTTCC---------CEECCCSSCSS----------------------CC-----
T ss_pred             hHHHHHHHhCCCCHHHHHHHHHHHHHhCCCC---------eEECCCCCCCC----------------------CC-----
Confidence            3578899999999999999999999998888         99999999986                      43     


Q ss_pred             CCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeE
Q 009517          139 LFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI  218 (533)
Q Consensus       139 ~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~V  218 (533)
                        |+.+++++.+++.+    ...+|++..|.++||+++++++..++|..+++++|++|+|+++++..++++++ ++||.|
T Consensus        46 --p~~i~~a~~~~~~~----~~~~Y~~~~G~~~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~-~~gd~v  118 (382)
T d1b5pa_          46 --PEHVKEAARRALAQ----GKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAIL-DPGDEV  118 (382)
T ss_dssp             --CHHHHHHHHHHHHT----TCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEE
T ss_pred             --CHHHHHHHHHHHhc----CCcCCCCCCCCHHHHHHHHhhhhhhcccccccccceecCCHHHHHHHHHHHhC-CCCCEE
Confidence              78999999988876    36789999999999999999999999999999999999999999999999998 899999


Q ss_pred             EEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHH
Q 009517          219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF  298 (533)
Q Consensus       219 lv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l  298 (533)
                      ++++|+|++|...++.+|.+++.+++.++++|.+|++.+++++++      +++++++++||||||.+++.+++++|+++
T Consensus       119 l~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~~~i~~~~P~NPTG~~~s~~~~~~l~~~  192 (382)
T d1b5pa_         119 IVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITP------RTKALVVNSPNNPTGAVYPKEVLEALARL  192 (382)
T ss_dssp             EEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHH
T ss_pred             EECCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhCCC------CCeEEEECCCCCCcchhCCHHHHHHHHHH
Confidence            999999999999999999999999998888899999999998876      79999999999999999999999999999


Q ss_pred             HHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHH
Q 009517          299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYK  378 (533)
Q Consensus       299 ~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~  378 (533)
                      |++||++||+||+|.++.|++. +..+. ..       .++ ++|++.||||+| ++||+|+||+++   ++++++.+.+
T Consensus       193 ~~~~~~~ii~De~y~~~~~~~~-~~~~~-~~-------~~~-~~i~~~s~SK~~-~~~GlR~G~~~~---~~~~i~~~~~  258 (382)
T d1b5pa_         193 AVEHDFYLVSDEIYEHLLYEGE-HFSPG-RV-------APE-HTLTVNGAAKAF-AMTGWRIGYACG---PKEVIKAMAS  258 (382)
T ss_dssp             HHHTTCEEEEECTTTTCBSSSC-CCCGG-GT-------CTT-TEEEEEESTTTT-TCGGGCCEEEEC---CHHHHHHHHH
T ss_pred             HHHcCeEEEEEccccceecCCC-CCCHH-Hc-------CCC-CEEEEecchhhc-cCcHhheEEEEE---CHHHHHHHHH
Confidence            9999999999999999999764 22221 11       233 689999999999 899999999998   9999999887


Q ss_pred             hhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCC
Q 009517          379 VAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLP  457 (533)
Q Consensus       379 ~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~  457 (533)
                      ... ...+++...|.++...+..       ......+++.+++.++++++.+.+.+.+. |+.+..|+||||+|+++.. 
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~p~gg~~~~~~~~~-  329 (382)
T d1b5pa_         259 VSRQSTTSPDTIAQWATLEALTN-------QEASRAFVEMAREAYRRRRDLLLEGLTAL-GLKAVRPSGAFYVLMDTSP-  329 (382)
T ss_dssp             HHHTTTCSCCHHHHHHHHHHHHC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCSBTTEEEEECTT-
T ss_pred             HHHhcccCccccccccccccccc-------ccchhHHHHHHHHHHHhhhhHHHHHHhhc-CCeEecCCceEEEeEeCCC-
Confidence            765 5677788888777666532       12234456777888999999999999887 8999999999999987641 


Q ss_pred             HHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHH
Q 009517          458 EKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l  524 (533)
                                 ...+...+.++|.++||.+.||+.|+. .+  +|||+++.++|+|++++++|++++
T Consensus       330 -----------~~~~~~~~~~~l~e~gV~v~PG~~F~~-~~--~iRis~~~~~e~l~~al~rl~~~L  382 (382)
T d1b5pa_         330 -----------IAPDEVRAAERLLEAGVAVVPGTDFAA-FG--HVRLSYATSEENLRKALERFARVL  382 (382)
T ss_dssp             -----------TCSSHHHHHHHHHHTTEECEESGGGTC-TT--EEEEECCSCHHHHHHHHHHGGGGC
T ss_pred             -----------CCCCHHHHHHHHHHCCEEEEeCcccCC-CC--eEEEEEcCCHHHHHHHHHHHHHhC
Confidence                       112333344566778999999999983 44  999999988899999999998763

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=4.5e-58  Score=470.19  Aligned_cols=386  Identities=27%  Similarity=0.488  Sum_probs=322.3

Q ss_pred             CcccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCC
Q 009517           62 NPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFS  141 (533)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p  141 (533)
                      ++++..++|. ++.++..+++++++|++         +|+|++|+|...+.                   ++       |
T Consensus         5 s~r~~~~~~~-ir~i~~~a~~l~~~G~~---------vi~l~~G~P~~~df-------------------~~-------p   48 (395)
T d1xi9a_           5 SKRALSVEYA-IRDVVLPARELEKKGIK---------VIRLNIGDPVKFDF-------------------QP-------P   48 (395)
T ss_dssp             CHHHHTCCC--------CHHHHHHTTCC---------CEECCCCCGGGTTC-------------------CC-------C
T ss_pred             hhccccCcHH-HHHHHHHHHHHHHCCCC---------eEECCCCCCCCCCC-------------------CC-------C
Confidence            4577777765 66788999999998888         99999999863111                   22       7


Q ss_pred             HHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEc
Q 009517          142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCP  221 (533)
Q Consensus       142 ~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~  221 (533)
                      +.+++++.+++.+    ..++|++..|.++||+++++++++++|+.+++++|++|+|+++++.+++.+++ ++||+|+++
T Consensus        49 ~~i~~a~~~a~~~----~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~i~i~~G~~~~~~~~~~~~~-~~Gd~vlv~  123 (395)
T d1xi9a_          49 EHMKEAYCKAIKE----GHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALL-DPGDEILVP  123 (395)
T ss_dssp             HHHHHHHHHHHHT----TCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEE
T ss_pred             HHHHHHHHHHHhc----CCCCCCCCCCCHHHHHHHHHhhhhcccccccccccccccccchhhhhhhhhhc-CCCCEEEEc
Confidence            8899999988876    35679999999999999999999999999999999999999999999999998 899999999


Q ss_pred             CCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHH
Q 009517          222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK  301 (533)
Q Consensus       222 ~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~  301 (533)
                      +|+|++|...++.+|++++.+++..+++|.+|++++++.+.+      +++++++++||||||.+++.+++++|+++|++
T Consensus       124 ~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~------~~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~  197 (395)
T d1xi9a_         124 GPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITD------RTKAIAVINPNNPTGALYDKKTLEEILNIAGE  197 (395)
T ss_dssp             ESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred             CCccccchhhhhhcCCEEEEEeccccccccchHHHHHHhhcc------cccEEEecCCCCCccchhhHHHHHHHHhhhhh
Confidence            999999999999999999999998888999999999998876      79999999999999999999999999999999


Q ss_pred             cCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHH----HHHHH
Q 009517          302 EGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEV----REQIY  377 (533)
Q Consensus       302 ~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~----~~~l~  377 (533)
                      |+++||+||+|.++.|++.  ..+...+       .++.++|++.||||+| ++||+|+||+++.. +.+.    .+...
T Consensus       198 ~~~~ii~De~y~~~~~~~~--~~~~~~~-------~~~~~vi~~~S~SK~~-~~~GlRvG~~~~~~-~~~~~~~~~~~~~  266 (395)
T d1xi9a_         198 YEIPVISDEIYDLMTYEGE--HISPGSL-------TKDVPVIVMNGLSKVY-FATGWRLGYMYFVD-PENKLSEVREAID  266 (395)
T ss_dssp             HTCCEEEECTTTTCBSSSC--CCCHHHH-------CSSSCEEEEEESTTTT-CCGGGCCEEEEEEC-TTCTTHHHHHHHH
T ss_pred             cCeeEEecccccccccccc--ccchhhc-------CCCCCEEEEeCcchhc-ccchhhcEeeEecC-HHHHHHHHHHHHH
Confidence            9999999999999988653  3343333       3445799999999999 89999999987632 3322    22222


Q ss_pred             HhhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCC
Q 009517          378 KVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLP  457 (533)
Q Consensus       378 ~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~  457 (533)
                      .+.....+++.++|.++..++.+..          ++++++++.|+++++.+.+.|++++++.+..|+||||+|++++..
T Consensus       267 ~~~~~~~~~~~~~q~a~~~~l~~~~----------~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~gg~~~~~~l~~~  336 (395)
T d1xi9a_         267 RLARIRLCPNTPAQFAAIAGLTGPM----------DYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPKIEVG  336 (395)
T ss_dssp             HHHHHTCCSCSHHHHHHHHHHHSCC----------HHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCEECSC
T ss_pred             HhhcCCCCcCHHHHHHHHHHhcCCH----------HHHHHHHHHHHHHHHHHHHHHHhCCCceecCCCeeEEEeEECCCC
Confidence            3333567889999999888886543          556778889999999999999999778899999999999887632


Q ss_pred             HHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHHH
Q 009517          458 EKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~  526 (533)
                      .          ..++..++.++++++||.+.||+.|+. .+.+||||+++.++++|++++++|++++++
T Consensus       337 ~----------~~~~~~~~~~ll~~~gV~v~PG~~Fg~-~~~~~~Ris~~~~~e~l~eal~rl~~~l~e  394 (395)
T d1xi9a_         337 P----------WKNDKEFVLDVLHNAHVLFVHGSGFGE-YGAGHFRAVFLPPIEILEEAMDRFEKFMKE  394 (395)
T ss_dssp             S----------CSSHHHHHHHHHHHHCEECEEGGGGCG-GGTTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             C----------CCCHHHHHHHHHHhCCEEEEcChhhCC-CCCCEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence            1          235677788999999999999999984 456699999998889999999999999875

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=2.2e-57  Score=464.53  Aligned_cols=382  Identities=24%  Similarity=0.391  Sum_probs=324.0

Q ss_pred             cCcccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCC
Q 009517           61 LNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLF  140 (533)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~  140 (533)
                      ++.++..++++.++.++..+.+    .+|         +|+|++|+|++                      ++       
T Consensus         2 ~s~~~~~~~~s~ir~~~~~~~~----~~d---------vi~l~~g~p~~----------------------~~-------   39 (388)
T d1gdea_           2 LSDRLELVSASEIRKLFDIAAG----MKD---------VISLGIGEPDF----------------------DT-------   39 (388)
T ss_dssp             HHHHHHHSCCCHHHHHHHHHHH----CTT---------CEECCCCSCCS----------------------CC-------
T ss_pred             hhhhhhhCCccHHHHHHHHHhC----CCC---------eEECCCCCCCC----------------------CC-------
Confidence            3456777788877777665554    235         99999999985                      33       


Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCC-CCCCCEEEcCChHHHHHHHHHHhccCCCCeEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFP-ADPNDIFLTDGASPAVHMMMQLLIRSENDGIL  219 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~-~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vl  219 (533)
                      |+.+++++.+++.+    ...+|++..|.++||+++|+++.++++.. ..+++|++|+|+++++..++.+++ ++||+|+
T Consensus        40 p~~v~~~~~~a~~~----~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~l~-~~gd~vl  114 (388)
T d1gdea_          40 PQHIKEYAKEALDK----GLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFL-KDGEEVL  114 (388)
T ss_dssp             CHHHHHHHHHHHHT----TCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTC-CTTCEEE
T ss_pred             CHHHHHHHHHHHhc----CccCCCCCcCCHHHHHHHHHHHHhhccccCCChheeeeccCcchHHHHHHHHhc-CCCCEEE
Confidence            78889999888876    35789999999999999999998776654 456789999999999999999998 8999999


Q ss_pred             EcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHH
Q 009517          220 CPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC  299 (533)
Q Consensus       220 v~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~  299 (533)
                      +++|+|.+|...++..|++++.++++++++|++|+++|++.+++      +++++++++||||||.++|++++++|+++|
T Consensus       115 v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~~~~P~NPtG~~~s~~~~~~l~~~a  188 (388)
T d1gdea_         115 IPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTD------KTRALIINSPCNPTGAVLTKKDLEEIADFV  188 (388)
T ss_dssp             EEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHH
T ss_pred             ECCCCcHHHHHHHHHcCCEEEEeecccccCCCCCHHHHHHhCcc------CCeEEEECCCcCCCCCcCCHHHHHHHHHHH
Confidence            99999999999999999999999999888999999999998876      799999999999999999999999999999


Q ss_pred             HHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHh
Q 009517          300 KKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV  379 (533)
Q Consensus       300 ~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~  379 (533)
                      ++|+++||+||+|.++.+.+. +..++..+.      ....++|++.||||+| |+||+|+||+++   +++++..+...
T Consensus       189 ~~~~~~vi~De~y~~~~~~~~-~~~~~~~~~------~~~~~~i~~~S~SK~~-~~~GlR~G~ii~---~~~~~~~~~~~  257 (388)
T d1gdea_         189 VEHDLIVISDEVYEHFIYDDA-RHYSIASLD------GMFERTITVNGFSKTF-AMTGWRLGFVAA---PSWIIERMVKF  257 (388)
T ss_dssp             HHTTCEEEEECTTTTCBCTTC-CCCCGGGST------TCGGGEEEEEESTTTT-TCGGGCCEEEEC---CHHHHHHHHHH
T ss_pred             HHcCCEEEEEcCChhhhhccC-CCCChhhcc------CCCCeEEEEeCChhhc-cCccccEEEEEe---eccchhhhhhc
Confidence            999999999999999988653 445544431      1224689999999999 899999999998   99999988887


Q ss_pred             hh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCH
Q 009517          380 AS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPE  458 (533)
Q Consensus       380 ~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~  458 (533)
                      .. ...+++.+.|.++..++.+.        .+.++++..++.++++++.+.+.|... ++.+..|+||+|+|++++.. 
T Consensus       258 ~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~p~gg~fl~~~l~~~-  327 (388)
T d1gdea_         258 QMYNATCPVTFIQYAAAKALKDE--------RSWKAVEEMRKEYDRRRKLVWKRLNEM-GLPTVKPKGAFYIFPRIRDT-  327 (388)
T ss_dssp             HHTTTCSCCHHHHHHHHHHHTCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCBTTEECCBCGGG-
T ss_pred             cccccccccccchhhHHHHHhhc--------cchhHHHHHHHHHHHhhhhhhhhhhhc-cccccCCCceEEEEEECCCC-
Confidence            65 66788899999988888643        244556778888999999999999987 88889999999999776411 


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHHHH
Q 009517          459 KAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~  527 (533)
                                ..++.++++++++++||.++||+.|+ ..++++|||+++.++++|++++++|+++++++
T Consensus       328 ----------~~~~~~~~~~ll~e~gV~v~PG~~F~-~~~~~~iRis~~~~~e~l~~al~rL~~~l~e~  385 (388)
T d1gdea_         328 ----------GLTSKKFSELMLKEARVAVVPGSAFG-KAGEGYVRISYATAYEKLEEAMDRMERVLKER  385 (388)
T ss_dssp             ----------TCCHHHHHHHHHHHTCEECEEGGGGC-GGGTTBEEEECCSCHHHHHHHHHHHHHHHHHT
T ss_pred             ----------CCCHHHHHHHHHHhCCEEEEechhhC-CCCCCEEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence                      12456777888999999999999998 44566999999988899999999999998875

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.4e-54  Score=441.52  Aligned_cols=373  Identities=25%  Similarity=0.393  Sum_probs=323.1

Q ss_pred             cCcccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCC
Q 009517           61 LNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLF  140 (533)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~  140 (533)
                      +++|+.+++-+.+..+..+++++++.|++         ||||++|+|++                      ++       
T Consensus         1 ~~~r~~~~~~~~~~~~~~~a~~~~~~G~~---------vI~l~~G~p~~----------------------~~-------   42 (375)
T d1o4sa_           1 VSRRISEIPISKTMELDAKAKALIKKGED---------VINLTAGEPDF----------------------PT-------   42 (375)
T ss_dssp             CCHHHHHSCCCSSHHHHHHHHHHHHTTCC---------CEECCCSSCSS----------------------CC-------
T ss_pred             CchhhhhCCCCHHHHHHHHHHHHHHCCCC---------eEECCCcCCCC----------------------CC-------
Confidence            46688888888888999999999998888         99999999985                      32       


Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      |+.+++++.+.+.+    ...+|++..|.++||+++++++...+|..+++++|++|+|+++|+..++++++ ++||+|++
T Consensus        43 p~~i~~~~~~~~~~----~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~-~~gd~vlv  117 (375)
T d1o4sa_          43 PEPVVEEAVRFLQK----GEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALL-DPGDEVIV  117 (375)
T ss_dssp             CHHHHHHHHHHHTT----CCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEE
T ss_pred             CHHHHHHHHHHHhc----CCcCCCCCcCCHHHHHHHHhhhhhccccccccccccccCcHHHHHHHHHHHHh-CCCCEEEE
Confidence            78899999888876    35689999999999999999999999999999999999999999999999999 89999999


Q ss_pred             cCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHH
Q 009517          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (533)
Q Consensus       221 ~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~  300 (533)
                      ++|+|+.|...+...|...+.++++++++|.+|.+.++.....      ++++++++|||||||.+++.+++++|+++|+
T Consensus       118 ~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~  191 (375)
T d1o4sa_         118 FSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVG------KTKAVLINSPNNPTGVVYRREFLEGLVRLAK  191 (375)
T ss_dssp             EESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred             ccCccccchhhhhccccccccccccccccccchhHHHHHhhcc------CccEEEEeCCCCCccCCCCHHHHHHHHHhHH
Confidence            9999999999999999999999999988999999998887766      8999999999999999999999999999999


Q ss_pred             HcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhh
Q 009517          301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVA  380 (533)
Q Consensus       301 ~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~  380 (533)
                      +|+++||+||+|..+.+++. + ......   .   +...++|++.||||++ ++||+|+||+++   ++++++.+....
T Consensus       192 ~~~~~ii~De~y~~~~~~~~-~-~~~~~~---~---~~~~~~i~~~S~SK~~-~l~G~R~G~~~~---~~~~~~~~~~~~  259 (375)
T d1o4sa_         192 KRNFYIISDEVYDSLVYTDE-F-TSILDV---S---EGFDRIVYINGFSKSH-SMTGWRVGYLIS---SEKVATAVSKIQ  259 (375)
T ss_dssp             HHTCEEEEECTTTTSBCSSC-C-CCHHHH---C---SSSTTEEEEEESTTTT-TCGGGCCEEEEC---CHHHHHHHHHHH
T ss_pred             HcCCceehHhhhcccccccc-c-cccccc---c---CCCCCEEEEeechhhc-cCCccccccccc---cccchhhhhhhh
Confidence            99999999999999887653 2 222222   1   2344789999999999 899999999998   999988887766


Q ss_pred             h-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHH
Q 009517          381 S-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEK  459 (533)
Q Consensus       381 ~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~  459 (533)
                      . ...+.+...+.+....+...             ....++.++++++.+.+.|++. |+++..|+||||+|++++.   
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~r~~~~~~~l~~~-g~~~~~p~gg~f~~~~~~~---  322 (375)
T d1o4sa_         260 SHTTSCINTVAQYAALKALEVD-------------NSYMVQTFKERKNFVVERLKKM-GVKFVEPEGAFYLFFKVRG---  322 (375)
T ss_dssp             HHHTCSCCHHHHHHHHHHTTCC-------------CHHHHHHHHHHHHHHHHHHHHT-TCCCCCCSBSSEEEEECSS---
T ss_pred             ccccccccccchhhhhhhcccc-------------hhhhHHHHHHHHHHHHHHHHhc-CceEecCCccEEEEEECCC---
Confidence            5 55666777777776666432             2445667889999999999998 9999999999999977652   


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHH
Q 009517          460 AIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~  525 (533)
                                 ++.+++.++|+++||.++||+.|+ .+|  ||||+++.++++|++++++|+++++
T Consensus       323 -----------~~~~~~~~ll~~~gV~v~pG~~F~-~~g--~iRis~~~~~e~l~~al~rl~~~l~  374 (375)
T d1o4sa_         323 -----------DDVKFCERLLEEKKVALVPGSAFL-KPG--FVRLSFATSIERLTEALDRIEDFLN  374 (375)
T ss_dssp             -----------CHHHHHHHHHHHHCEECEEGGGGT-CTT--EEEEECCSCHHHHHHHHHHHHHHHT
T ss_pred             -----------CHHHHHHHHHHhCCEEEEEccccC-CCC--eEEEEEcCCHHHHHHHHHHHHHHhc
Confidence                       356667888999999999999998 444  9999999888999999999999875

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=100.00  E-value=8.8e-55  Score=449.23  Aligned_cols=398  Identities=15%  Similarity=0.228  Sum_probs=322.3

Q ss_pred             cCcccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCC
Q 009517           61 LNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLF  140 (533)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~  140 (533)
                      ++.++..++++++.++..++.+.     +         +|||++|+|++                      ++       
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~-----~---------~I~L~~G~Pd~----------------------~~-------   40 (418)
T d2r5ea1           4 LPKRYQGSTKSVWVEYIQLAAQY-----K---------PLNLGQGFPDY----------------------HA-------   40 (418)
T ss_dssp             CCGGGTTCCCCHHHHHHHHHHHH-----C---------CEECSSSCCSS----------------------CC-------
T ss_pred             hhhhhcCCCCCHHHHHHHHhcCC-----C---------CEEccCCCCCC----------------------CC-------
Confidence            46688899999887776665543     4         89999999985                      32       


Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCC-CCEEEcCChHHHHHHHHHHhccCCCCeEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGIL  219 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~~~gd~Vl  219 (533)
                      |+.+++++.+++.+... ..++|++..|.++||++||+++.+++|.++++ ++|++|+|+++|+..+++.++ ++||.|+
T Consensus        41 p~~i~eal~~a~~~~~~-~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~~~~~~l~-~~gd~vl  118 (418)
T d2r5ea1          41 PKYALNALAAAANSPDP-LANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHV-DEGDEVI  118 (418)
T ss_dssp             CHHHHHHHHHHHTCSCG-GGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHC-CTTCEEE
T ss_pred             CHHHHHHHHHHHhCCCc-cCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCchhhhhhhhhcc-cccccee
Confidence            68888888888875432 35689999999999999999999999999885 899999999999999999999 8999999


Q ss_pred             EcCCcCcchHHHHHHhCCeEEEEecCCCC--------CCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHH
Q 009517          220 CPIPQYPLYSASIALHGGTLVPYYLDEAT--------GWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEEN  291 (533)
Q Consensus       220 v~~p~~~~~~~~~~~~g~~~~~v~~~~~~--------~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~  291 (533)
                      +++|+|++|...+...|.+++.++++++.        .|.++++.+......      +++++++++||||||.+++.++
T Consensus       119 v~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~p~NPtG~~~s~e~  192 (418)
T d2r5ea1         119 IIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNE------KTKMIIINTPHNPLGKVMDRAE  192 (418)
T ss_dssp             EEESCCTTHHHHHHHTTCEEEEEECEESCCSSCEEGGGEECCHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHH
T ss_pred             ccccccchhhHHHHHcCCeEEEEEecccccccchhhhhhhhhHHHHhhhhhc------cccceecCCcCccccccccHHH
Confidence            99999999999999999999999987653        256788888887665      8999999999999999999999


Q ss_pred             HHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHH
Q 009517          292 QRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAE  371 (533)
Q Consensus       292 l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~  371 (533)
                      +++|+++|++|+++||+||+|..+.|++. +..++..+.      +...++|++.||||.+ ++||+|+||+++   +++
T Consensus       193 ~~~l~~~a~~~~~~iI~De~y~~~~~~~~-~~~s~~~~~------~~~~~~i~~~S~SK~~-~~pGlRiG~~~~---~~~  261 (418)
T d2r5ea1         193 LEVVANLCKKWNVLCVSDEVYEHMVFEPF-EHIRICTLP------GMWERTITIGSAGKTF-SLTGWKIGWAYG---PEA  261 (418)
T ss_dssp             HHHHHHHHHHHTCEEEEECTTTTCBCTTC-CCCCGGGST------TTGGGEEEEEEHHHHT-TCGGGCCEEEES---CHH
T ss_pred             HHHHhhhhhcCCeeeecccchhhhccCCC-ccccccccc------cccceeeeeecCCccc-cCCCcccccccc---cch
Confidence            99999999999999999999999998653 344443331      2345789999999999 899999999998   999


Q ss_pred             HHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEE
Q 009517          372 VREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYL  450 (533)
Q Consensus       372 ~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~  450 (533)
                      +++.+.+... .+++.+.+.|.++...+.....   ......++++++++.|+.+++.+.+.|+++ |+.+..|+||||+
T Consensus       262 ~i~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~P~gg~f~  337 (418)
T d2r5ea1         262 LLKNLQMVHQNCVYTCATPIQEAIAVGFETELK---RLKSPECYFNSISGELMAKRDYMASFLAEV-GMNPTVPQGGYFM  337 (418)
T ss_dssp             HHHHHHHHHTTTTCSCCHHHHHHHHHHHHHHHT---TTTSTTSHHHHHHHHHHHHHHHHHHHHHHT-TCEEEECSBSSEE
T ss_pred             hhhhhhhcccccccccccchhhhcccccccccc---ccccchhhHHHHHHHHHHhhhhHHhhHhhc-CCcccCCCceeEE
Confidence            9999988775 5677788888777665532100   000112446778889999999999999998 9999999999999


Q ss_pred             ecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCC----CCceEEEEecCCcCcHHHHHHHHHHHH
Q 009517          451 FPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVP----GTWHFRCTILPQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~----g~~~iRis~~~~~e~i~~~~~~l~~~l  524 (533)
                      |+++.......+........++..+++.+++++||.++||+.|+...    +.+|||||++.++|+|++++++|++++
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~g~~~iRis~~~~~e~l~~a~~rl~~~l  415 (418)
T d2r5ea1         338 VADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENLQKAAEILRKWK  415 (418)
T ss_dssp             EEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGGGHHHHTTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred             EEEcccccccccchhcccccCHHHHHHHHHHHCCEEEeCchhhCCCCCccCCCCEEEEEecCCHHHHHHHHHHHHHHH
Confidence            98764110000001111233567888899999999999999997432    346999999988899999999999876

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=1.1e-54  Score=447.96  Aligned_cols=371  Identities=21%  Similarity=0.309  Sum_probs=301.7

Q ss_pred             ceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHH
Q 009517           98 EILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIA  177 (533)
Q Consensus        98 ~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia  177 (533)
                      ++|+|++|+|++                      +.   +..+++.+++++.+.+...   ...+|++..|.++||+++|
T Consensus        31 ~vI~L~~G~p~~----------------------~~---~~~~~~~~~~~~~~~~~~~---~~~~Y~~~~G~~~LReaia   82 (412)
T d1bw0a_          31 PIIKLSVGDPTL----------------------DK---NLLTSAAQIKKLKEAIDSQ---ECNGYFPTVGSPEAREAVA   82 (412)
T ss_dssp             CCEECCCCCTTT----------------------TS---CSCCCHHHHHHHHHHHHTT---CSSSCCCTTCCHHHHHHHH
T ss_pred             CcEECcCCCCCC----------------------CC---CccccHHHHHHHHHHhhCC---CCCCCCCCcCCHHHHHHHH
Confidence            499999999985                      11   2223677888888777653   3568999999999999999


Q ss_pred             HHHHhhcC------CCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCC
Q 009517          178 AGIEARDG------FPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWG  251 (533)
Q Consensus       178 ~~~~~~~g------~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~  251 (533)
                      +++.++++      ..+++++|++|+|+++++..++++++ ++||+|++++|+|+.|..+++.+|++++.++++++++|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~-~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~  161 (412)
T d1bw0a_          83 TWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAIC-DAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWE  161 (412)
T ss_dssp             HHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTE
T ss_pred             HHHHHhcCcccccCCCCCCCeEEEecccccchhhhhhhhh-ccccceeeeeccchhhhhhhhccCccccccccccccccc
Confidence            99998764      45788999999999999999999999 899999999999999999999999999999999888999


Q ss_pred             CCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHh
Q 009517          252 LETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSR  331 (533)
Q Consensus       252 ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~  331 (533)
                      ++++.+++.+.+      +++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.|++..+.... ....
T Consensus       162 ~~~~~l~~~~~~------~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~-~~~~  234 (412)
T d1bw0a_         162 ADLDEIRRLKDD------KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATF-TSVA  234 (412)
T ss_dssp             ECHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCC-CCTT
T ss_pred             hhhHHHHhhhhc------cccccccccccccccccchhhhccccccccccCCeeeechhhHHHhccCCCCCcccc-cccc
Confidence            999999998776      799999999999999999999999999999999999999999999999765332221 1112


Q ss_pred             hcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEec---CCHHHHHHHHHhhhccccCChHHHHHHHHHcCCCCCCChhH
Q 009517          332 SMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTG---FSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESY  408 (533)
Q Consensus       332 ~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~---~~~~~~~~l~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~  408 (533)
                      .+   +....++++.||||.+ +++|||+||+++..   ...+++.........+.+++...|.++...+...       
T Consensus       235 ~~---~~~~~~~~~~s~SK~~-~~~G~RvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  303 (412)
T d1bw0a_         235 DF---ETTVPRVILGGTAKNL-VVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNT-------  303 (412)
T ss_dssp             SS---CCSCCEEEEEESTTTT-SCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSS-------
T ss_pred             cc---ccccccccccccCccC-ccCCCCcccccccchhhcchhhhhhhccccccccCCchhhhhhcccccccc-------
Confidence            22   3445688999999999 89999999999832   1234455555544444555566655554444221       


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEE
Q 009517          409 ESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLV  488 (533)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~  488 (533)
                        ..+++.++++.++++++.+.+.|.+.+|+.+..|+||||+|++++.+.       ..+..++.++++++|+++||.+.
T Consensus       304 --~~~~~~~~~~~~~~~r~~~~~~l~~~~g~~~~~p~gg~~l~~~~~~~~-------~~~~~~~~~~~~~ll~~~gV~v~  374 (412)
T d1bw0a_         304 --PQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEK-------YRDIKTDVEFFEKLLEEENVQVL  374 (412)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCBTTEEEEEECGGG-------BSSCCSHHHHHHHHHHHHCEECE
T ss_pred             --cccccccccchhHHHHHHHHHHHHHhcCceecCCCCceEEEEeCChhh-------cCCCCCHHHHHHHHHHhCCEEEE
Confidence              235677888999999999999998877999999999999998776322       11344678888999999999999


Q ss_pred             cCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHHHH
Q 009517          489 PGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       489 pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~  527 (533)
                      ||+.|+. +|  +||||++.++++|+++++||+++++++
T Consensus       375 PG~~Fg~-~g--~iRis~~~~~e~l~eal~Rl~~~l~~~  410 (412)
T d1bw0a_         375 PGTIFHA-PG--FTRLTTTRPVEVYREAVERIKAFCQRH  410 (412)
T ss_dssp             EGGGGTC-TT--EEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred             eccccCC-CC--eEEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence            9999983 44  999999988899999999999988765

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=2e-53  Score=435.05  Aligned_cols=380  Identities=24%  Similarity=0.339  Sum_probs=317.1

Q ss_pred             CcccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCC
Q 009517           62 NPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFS  141 (533)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p  141 (533)
                      ++|+..+++++++.+...+.+.+..|++         ||+|++|+|++                      ++       |
T Consensus         2 ~~r~~~~~~~~i~~l~~~a~~~~~~g~~---------vi~l~~G~p~~----------------------~~-------p   43 (389)
T d2gb3a1           2 SDRVLLTEESPIRKLVPFAEMAKKRGVR---------IHHLNIGQPDL----------------------KT-------P   43 (389)
T ss_dssp             CHHHHSCCCCTTGGGHHHHHHHHHTTCE---------EEECSSCCCCS----------------------CC-------C
T ss_pred             ChhhhcCCCCHHHHHHHHHHHHHHcCCC---------EEECCCCCCCC----------------------CC-------C
Confidence            5688899999999999999999998888         99999999985                      33       6


Q ss_pred             HHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEc
Q 009517          142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCP  221 (533)
Q Consensus       142 ~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~  221 (533)
                      +.+++++.+...     ....|++..|.++||+++|+++.+++|+++++++|++|+|+++++..++++++ ++||.|+++
T Consensus        44 ~~~~~al~~~~~-----~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~~~~~~l~-~~gd~V~i~  117 (389)
T d2gb3a1          44 EVFFERIYENKP-----EVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIA-NPGDEILVL  117 (389)
T ss_dssp             THHHHHHHHTCC-----SSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEE
T ss_pred             HHHHHHHHhcCC-----CCCCCCCCcCCHHHHHHHHHHHHHhcCCCcccceEEecccccccccccccccc-cCCCeEEEe
Confidence            777777765432     36789999999999999999999999999999999999999999999999998 899999999


Q ss_pred             CCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHH
Q 009517          222 IPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK  301 (533)
Q Consensus       222 ~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~  301 (533)
                      +|+|+.|...+...|..++.++.+... +..+.+.+...+.+      +++++++++||||||.+++.+++++|+++|++
T Consensus       118 ~P~y~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~  190 (389)
T d2gb3a1         118 EPFYANYNAFAKIAGVKLIPVTRRMEE-GFAIPQNLESFINE------RTKGIVLSNPCNPTGVVYGKDEMRYLVEIAER  190 (389)
T ss_dssp             ESCCTHHHHHHHHHTCEEEEEECCGGG-TSCCCTTGGGGCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred             CCCCccccccccccCcccccccccccc-ccchhhhhhhhccc------CccEEEeCCCCccccccchHHHHHHHHhhccc
Confidence            999999999999999999999987653 34444555555544      79999999999999999999999999999999


Q ss_pred             cCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh
Q 009517          302 EGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS  381 (533)
Q Consensus       302 ~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~  381 (533)
                      |+++||+||+|..+.+++.  ..+....        ...+++++.|+||.+ +++|||+||+++  .++.+...+.....
T Consensus       191 ~~~~iI~De~y~~~~~~~~--~~~~~~~--------~~~~~~v~~s~sK~~-~~~GlRiG~~~~--~~~~i~~~~~~~~~  257 (389)
T d2gb3a1         191 HGLFLIVDEVYSEIVFRGE--FASALSI--------ESDKVVVIDSVSKKF-SACGARVGCLIT--RNEELISHAMKLAQ  257 (389)
T ss_dssp             TTCEEEEECTTTTCBCSSC--CCCGGGS--------CCTTEEEEEESTTTT-TCGGGCCEEEEC--SCHHHHHHHHHHHH
T ss_pred             CCEEEEEeccccccccccc--ccccccc--------ccccccccccccccc-cCcccceeeeec--cchhHHHHHhhhhh
Confidence            9999999999999998764  2222111        223578889999999 789999999997  24455555555555


Q ss_pred             ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHH
Q 009517          382 VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAI  461 (533)
Q Consensus       382 ~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~  461 (533)
                      ...+++.+.|.++..++...          .++++.+++.++++++.+.+.|+++++..+..|+||||+|++++.     
T Consensus       258 ~~~~~~~~~~~~~~~~l~~~----------~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~g~~~~~~lp~-----  322 (389)
T d2gb3a1         258 GRLAPPLLEQIGSVGLLNLD----------DSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAELPV-----  322 (389)
T ss_dssp             HSCCCCHHHHHHHHHHHTCC----------HHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCCSBSSEEEEECSS-----
T ss_pred             cccccccccccccccccccc----------chhcccccccccccchhhhhhhhhhccccccCCCceEEEEEeCCC-----
Confidence            66777888888888887642          255677888999999999999999955678899999999987652     


Q ss_pred             HHHHhcCCCChHHHHHHHHHc-----cceEEEcCCCCCCCC--CCceEEEEecCCcCcHHHHHHHHHHHHHHHH
Q 009517          462 KAAEAEKTVPDAFYCRRLLNA-----TGIVLVPGSGFGQVP--GTWHFRCTILPQEDKIPAIVTRLTDFHKNFM  528 (533)
Q Consensus       462 ~~~~~~~~~~~~~~~~~ll~~-----~gV~v~pg~~f~~~~--g~~~iRis~~~~~e~i~~~~~~l~~~l~~~~  528 (533)
                              .++..+++++|++     +||.+.||+.|+..+  +.++|||+++.+++++++++++|+++++++.
T Consensus       323 --------~~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis~~~~~~~l~~a~~~L~~~lk~f~  388 (389)
T d2gb3a1         323 --------EDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLMEGLKMFC  388 (389)
T ss_dssp             --------SCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECCSCHHHHHHHHHHHHHHHHHHH
T ss_pred             --------CCHHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEEEEcCCHHHHHHHHHHHHHHHHHhh
Confidence                    2456677788765     588999999997543  3569999999888999999999999999874

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-53  Score=439.84  Aligned_cols=393  Identities=19%  Similarity=0.277  Sum_probs=318.6

Q ss_pred             CcccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCC
Q 009517           62 NPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFS  141 (533)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p  141 (533)
                      ++|+..+.++++.++...+     .++|         +|||++|.|++                      ++       |
T Consensus         4 ~~r~~~~~~~~~~~~~~~~-----~~~d---------vI~l~~G~p~~----------------------~~-------p   40 (418)
T d1w7la_           4 ARRLDGIDYNPWVEFVKLA-----SEHD---------VVNLGQGFPDF----------------------PP-------P   40 (418)
T ss_dssp             CGGGTTCCCCTHHHHHHHH-----HTSC---------CEECCCCSCSS----------------------CC-------C
T ss_pred             CccccCCCCCHHHHHHHHh-----CCCC---------CEECCCCCCCC----------------------CC-------C
Confidence            4577788888886665543     2345         99999999985                      33       6


Q ss_pred             HHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCC-CCEEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          142 ADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       142 ~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      +.+++++.+++.+..  ..++|++..|.++||+++|+++++++|.++++ ++|++|+|+++++..++++++ ++||.|++
T Consensus        41 ~~v~~a~~~al~~~~--~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~-~~g~~vlv  117 (418)
T d1w7la_          41 DFAVEAFQHAVSGDF--MLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALV-DEGDEVII  117 (418)
T ss_dssp             HHHHHHHHHHTSSCG--GGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHC-CTTCEEEE
T ss_pred             HHHHHHHHHHHhCCC--cccCCCCCcCCHHHHHHHHHHHHHHhCCCCCcccceeeccCcHHHHHHHHHhhc-cCCceeec
Confidence            778888888887532  25679999999999999999999999988885 689999999999999999999 89999999


Q ss_pred             cCCcCcchHHHHHHhCCeEEEEecCCC----------CCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHH
Q 009517          221 PIPQYPLYSASIALHGGTLVPYYLDEA----------TGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE  290 (533)
Q Consensus       221 ~~p~~~~~~~~~~~~g~~~~~v~~~~~----------~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~  290 (533)
                      ++|+|+.|...+...|++++.++..+.          .+|.+|.+++.....+      ++++|++++||||||.++|.+
T Consensus       118 ~~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~------~~~~i~~~~p~NPtG~~~s~~  191 (418)
T d1w7la_         118 IEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTS------RTKALVLNTPNNPLGKVFSRE  191 (418)
T ss_dssp             EESCCTTHHHHHHHTTCEEEEEECEECC---CCSEEGGGEECCHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHH
T ss_pred             cccccchhHHHHHHcCCEeeccccccccccccccccccCcccchhhhhccccc------cccceeccCcCCcccccccHH
Confidence            999999999999999999999887642          3566788877776655      899999999999999999999


Q ss_pred             HHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCH
Q 009517          291 NQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSA  370 (533)
Q Consensus       291 ~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~  370 (533)
                      ++++|+++|++++++||+||+|.++.|++. +..++.++. +     ...++|++.||||.+ ++||+|+||+++   ++
T Consensus       192 ~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~-~~~~~~~~~-~-----~~~~~i~~~S~SK~~-~~pG~RvG~~v~---~~  260 (418)
T d1w7la_         192 ELELVASLCQQHDVVCITDEVYQWMVYDGH-QHISIASLP-G-----MWERTLTIGSAGKTF-SATGWKVGWVLG---PD  260 (418)
T ss_dssp             HHHHHHHHHHHHTCEEEEECTTTTCBCTTC-CCCCGGGST-T-----TGGGEEEEEEHHHHT-TCGGGCCEEEEC---CH
T ss_pred             HHHHHHHHHHhcCCCchhhhhhHHhhcCCC-CCCCHHHcc-c-----cccccceecccCccc-cCCCCccccccc---ch
Confidence            999999999999999999999999999764 445554431 1     123689999999998 789999999998   99


Q ss_pred             HHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeE
Q 009517          371 EVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMY  449 (533)
Q Consensus       371 ~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~  449 (533)
                      +++..+.+... ...+++.+.|.++..+|.....   ......+++..+++.++++++.+.+.|+++ |+++.+|+||||
T Consensus       261 ~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~P~gg~f  336 (418)
T d1w7la_         261 HIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQL---LFRQPSSYFVQFPQAMQRCRDHMIRSLQSV-GLKPLIPQGSYF  336 (418)
T ss_dssp             HHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHH---TTTSTTSHHHHHHHHHHHHHHHHHHHHHTT-TCEEEECSBSSE
T ss_pred             hhhhhhccccccccccccchhhHHHHHHhhhccc---cccccccccccchhhhhhhhhhhhhhhhhc-CCcccCCCceeE
Confidence            99999988876 6788889999888877743210   001113456778889999999999999998 999999999999


Q ss_pred             EecccCCCHHHHHHHH----hcCCCChHHHHHHHHHccceEEEcCCCCCCC----CCCceEEEEecCCcCcHHHHHHHHH
Q 009517          450 LFPRIQLPEKAIKAAE----AEKTVPDAFYCRRLLNATGIVLVPGSGFGQV----PGTWHFRCTILPQEDKIPAIVTRLT  521 (533)
Q Consensus       450 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~----~g~~~iRis~~~~~e~i~~~~~~l~  521 (533)
                      +|++++  .. ..+..    ..+...+..++.++|+++||.++||+.|+..    .+.+|||||++.+++++++++++|+
T Consensus       337 ~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~~~~~iRis~~~~~~~l~~a~~rl~  413 (418)
T d1w7la_         337 LITDIS--DF-KRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQAMDEKLR  413 (418)
T ss_dssp             EEEECH--HH-HHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCCCHHHHHHHHHHHH
T ss_pred             EEEECc--cc-ccccchhccccccccHHHHHHHHHHHCCEEEEcchhhcCCCccCCCCCEEEEEEcCCHHHHHHHHHHHH
Confidence            997664  11 11110    0112346778899999999999999999742    3456999999988889999999998


Q ss_pred             HHH
Q 009517          522 DFH  524 (533)
Q Consensus       522 ~~l  524 (533)
                      ++.
T Consensus       414 ~~~  416 (418)
T d1w7la_         414 KWK  416 (418)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            764

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.1e-52  Score=428.28  Aligned_cols=351  Identities=22%  Similarity=0.327  Sum_probs=301.9

Q ss_pred             eeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHH
Q 009517           99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA  178 (533)
Q Consensus        99 ~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~  178 (533)
                      +|||++|.|++                      ++       |+.+.+++.+.+.+    ..++|++..|.++||++||+
T Consensus        28 ~i~l~~G~Pd~----------------------~~-------p~~i~~a~~~~~~~----~~~~Y~~~~G~~~LReaia~   74 (382)
T d1u08a_          28 AINLSQGFPDF----------------------DG-------PRYLQERLAHHVAQ----GANQYAPMTGVQALREAIAQ   74 (382)
T ss_dssp             CEECCCSSCSS----------------------CC-------CHHHHHHHHHHHHT----TCCSCCCTTCCHHHHHHHHH
T ss_pred             CEEccCCCCCC----------------------CC-------CHHHHHHHHHHHhc----CCCCCCCCcCCHHHHHHHHH
Confidence            99999999986                      32       67888888888876    36789999999999999999


Q ss_pred             HHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHH
Q 009517          179 GIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEV  257 (533)
Q Consensus       179 ~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l  257 (533)
                      ++++++|.+++++ +|++|+|+++++..++++++ ++||.|++++|+|+.+...+...|..+..++.+. .++.+|++++
T Consensus        75 ~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~-~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l  152 (382)
T d1u08a_          75 KTERLYGYQPDADSDITVTAGATEALYAAITALV-RNGDEVICFDPSYDSYAPAIALSGGIVKRMALQP-PHFRVDWQEF  152 (382)
T ss_dssp             HHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHC-CTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCT-TTCCCCHHHH
T ss_pred             HHHHHhCCCCCCCceEEeccchHHHHHHHHhhcc-cccceEEEecccccchhhhhhhccccceeccccc-ccccCCHHHH
Confidence            9999999988877 59999999999999999999 8999999999999999999999999988888765 4788999999


Q ss_pred             HHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCC
Q 009517          258 KKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE  337 (533)
Q Consensus       258 ~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~  337 (533)
                      ++.+++      +++++++++||||||.+++.+++++|+++|++++++++.|++|..+.+.+... .+.... ...    
T Consensus       153 ~~~~~~------~~~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~-~~~~~~-~~~----  220 (382)
T d1u08a_         153 AALLSE------RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGH-ASVLAH-PQL----  220 (382)
T ss_dssp             HHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCC-CCGGGS-HHH----
T ss_pred             hhhhcc------CccEEEECCCCcccccccccccchhhhhhhccccceeeeecchhhcccccccc-cccccc-ccc----
Confidence            988876      89999999999999999999999999999999999999999999988865432 222121 111    


Q ss_pred             CCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHH
Q 009517          338 KDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERD  416 (533)
Q Consensus       338 ~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~  416 (533)
                      . .++|++.|+||.+ ++||+|+||+++   ++++++.+.+... ..++++.+.|.++..+++.+.          ++++
T Consensus       221 ~-~~~i~~~s~SK~~-~~pG~RiG~~v~---~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~----------~~~~  285 (382)
T d1u08a_         221 R-ERAVAVSSFGKTY-HMTGWKVGYCVA---PAPISAEIRKVHQYLTFSVNTPAQLALADMLRAEP----------EHYL  285 (382)
T ss_dssp             H-TTEEEEEEHHHHT-TCGGGCCEEEEC---CHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCT----------HHHH
T ss_pred             c-CcEEEEeeccccc-cCCcccchhhhc---cchhHHHHHhhhcccccccccccccccccccccch----------HHHH
Confidence            1 2579999999999 799999999998   9999999988776 678899999999999886432          4567


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCC
Q 009517          417 GILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQV  496 (533)
Q Consensus       417 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~  496 (533)
                      .+++.|+++++.+.+.+... |+.++.|+||||+|++++..          +..++.+++.++|+++||.++||+.|+..
T Consensus       286 ~~~~~~~~~~~~l~~~~~~~-g~~~~~p~gg~~~~~~~~~~----------~~~d~~e~~~~ll~e~gV~v~PG~~F~~~  354 (382)
T d1u08a_         286 ALPDFYRQKRDILVNALNES-RLEILPCEGTYFLLVDYSAV----------STLDDVEFCQWLTQEHGVAAIPLSVFCAD  354 (382)
T ss_dssp             THHHHHHHHHHHHHHHTTSS-SCEECCCCBSSEEEEECTTT----------CCSCHHHHHHHHHHHSCEECEEGGGGCSS
T ss_pred             HHHHHHHhhhhhhhhhhccC-CcEEecCCceEEEEEecCCC----------CCCCHHHHHHHHHHHCCEEEEcchhhCCC
Confidence            78889999999999998876 99999999999999876521          12357778889999999999999999753


Q ss_pred             -CCCceEEEEecCCcCcHHHHHHHHHH
Q 009517          497 -PGTWHFRCTILPQEDKIPAIVTRLTD  522 (533)
Q Consensus       497 -~g~~~iRis~~~~~e~i~~~~~~l~~  522 (533)
                       .+.++||||++.++|+|+++++||++
T Consensus       355 ~~~~~~~Ris~~~~~e~l~~al~RL~~  381 (382)
T d1u08a_         355 PFPHKLIRLCFAKKESTLLAAAERLRQ  381 (382)
T ss_dssp             CCCSCEEEEECCSCHHHHHHHHHHHTT
T ss_pred             CCCCCEEEEEEeCCHHHHHHHHHHHhC
Confidence             45679999999888999999999875

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=100.00  E-value=6e-53  Score=432.05  Aligned_cols=359  Identities=17%  Similarity=0.230  Sum_probs=292.0

Q ss_pred             eeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHH
Q 009517           99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA  178 (533)
Q Consensus        99 ~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~  178 (533)
                      +|+|++|+|++                      ++       |+.+++++.+++.+    ..++|++  |.++||+++|+
T Consensus        33 vi~l~~g~pdf----------------------~~-------p~~v~~al~~~~~~----~~~~Y~~--g~~~Lr~aia~   77 (394)
T d1c7na_          33 VVPLSVADMEF----------------------KN-------PPELIEGLKKYLDE----TVLGYTG--PTEEYKKTVKK   77 (394)
T ss_dssp             CCCCCSSSCSS----------------------CC-------CHHHHHHHHHHHHH----CCCSSBC--CCHHHHHHHHH
T ss_pred             eEEccCCCCCC----------------------CC-------CHHHHHHHHHHHhC----CCcCCCC--CCHHHHHHHHH
Confidence            99999999986                      43       79999999998876    3567864  68899999999


Q ss_pred             HHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCC-CCCCCCHHHH
Q 009517          179 GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEA-TGWGLETSEV  257 (533)
Q Consensus       179 ~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~-~~~~ld~~~l  257 (533)
                      ++++++|+++++++|++|+|+++++..++++++ +|||+|++++|.|.++...+...|.+.+.++.... ..|.+|.+.+
T Consensus        78 ~~~~~~g~~~~~~~I~vt~G~~~al~~~~~~~~-~pgd~vi~~~p~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~d~~~~  156 (394)
T d1c7na_          78 WMKDRHQWDIQTDWIINTAGVVPAVFNAVREFT-KPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKL  156 (394)
T ss_dssp             HHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC-CTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHH
T ss_pred             HHHHhcCCCCCCcceEeeccchhhhhhhhcccc-ccccccccccCcccchhhHHhhhhhcccccccccccccccchhhhh
Confidence            999999999999999999999999999999999 89999999999999999999999999998886543 3566899998


Q ss_pred             HHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCC
Q 009517          258 KKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE  337 (533)
Q Consensus       258 ~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~  337 (533)
                      +..+..     +++++|++++||||||.+++.+++++|+++|++++++||+||+|.++.|++. .+.+......++    
T Consensus       157 ~~~~~~-----~~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~-~~~~~~~~~~~~----  226 (394)
T d1c7na_         157 EKLSKD-----KNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGY-EHTVFQSIDEQL----  226 (394)
T ss_dssp             HHHHTC-----TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTC-CCCCGGGSCHHH----
T ss_pred             hhhhcc-----ccceEEEecccccccceeccHHHhhhhhccccccceeEeccccccccccCCc-cccchhhhhccc----
Confidence            887754     2799999999999999999999999999999999999999999999999764 333333322222    


Q ss_pred             CCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHH
Q 009517          338 KDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERD  416 (533)
Q Consensus       338 ~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~  416 (533)
                       ..+++++.||||++ +++|+|+||+++  .++.+.+.+.+... ...++....+.++.....         ....++.+
T Consensus       227 -~~~~i~~~s~SK~~-~~~G~R~g~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~~~---------~~~~~~~~  293 (394)
T d1c7na_         227 -ADKTITFTAPSKTF-NIAGMGMSNIII--KNPDIRERFTKSRDATSGMPFTTLGYKACEICY---------KECGKWLD  293 (394)
T ss_dssp             -HTTEEEEECSHHHH-TCGGGCCEEEEC--CCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHH---------HHCHHHHH
T ss_pred             -ccceeecccccccc-cccccccccccc--cChhhhhhhhhhhhhccccccccccchhhhhhh---------cchhhhhc
Confidence             12578899999999 899999999988  36677777777665 333444443333332221         11234566


Q ss_pred             HHHHHHHHHHHHHHHHHhc-CCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCC
Q 009517          417 GILSSLARRAKTLEDAFNS-LEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ  495 (533)
Q Consensus       417 ~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~  495 (533)
                      ++++.++++++.+.+.|+. .+++.+..|+|+||+|++++..          + .++..++.++++++||.+.||+.|| 
T Consensus       294 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~g~~~~~~~~~~~----------~-~~~~~~~~~Ll~~~gV~v~pG~~Fg-  361 (394)
T d1c7na_         294 GCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRAL----------K-MDHKAMEEFMIHKAQIFFDEGYIFG-  361 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTSBCCCCSBSSEEEEECGGG----------C-CCHHHHHHHHHHTTCCCCEEGGGGC-
T ss_pred             ccccccchhhhhhhhhhhccccceeecCCCceeEEEEECCCC----------C-CCHHHHHHHHHHhCCEEEEcchhhC-
Confidence            7777888888888888876 3688889999999999876510          1 2456677888999999999999998 


Q ss_pred             CCCCceEEEEecCCcCcHHHHHHHHHHHHHHHH
Q 009517          496 VPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFM  528 (533)
Q Consensus       496 ~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~~  528 (533)
                      ..+.+|||||++.++++|++++++|++++++++
T Consensus       362 ~~~~~~iRis~~~~~e~i~eal~rl~~~l~~Lk  394 (394)
T d1c7na_         362 DGGIGFERINLAAPSSVIQESLERLNKALKDLK  394 (394)
T ss_dssp             GGGTTEEEEECCSCHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCEEEEEEeCCHHHHHHHHHHHHHHHHhcC
Confidence            466679999999888899999999999999863

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.3e-51  Score=425.92  Aligned_cols=390  Identities=19%  Similarity=0.264  Sum_probs=305.8

Q ss_pred             cCcccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCC
Q 009517           61 LNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLF  140 (533)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~  140 (533)
                      +++...+++++++.+++..+     .+++         +|+|+.|.|+.                            ..+
T Consensus        16 ~s~~~~~~~~s~ir~~~~~~-----~~~~---------~I~l~~G~Pd~----------------------------~~~   53 (420)
T d1vp4a_          16 ISKIGQNMKSSIIREILKFA-----ADKD---------AISFGGGVPDP----------------------------ETF   53 (420)
T ss_dssp             CCHHHHTCCCCCHHHHTTTT-----TSTT---------CEECCCCSCCG----------------------------GGS
T ss_pred             HhHHHHhCCCcHHHHHHHHh-----CCCC---------cEecCCcCCCC----------------------------ccC
Confidence            45555566677666554432     2334         99999999983                            223


Q ss_pred             CHHHHHHHH-HHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCC-CCCCCEEEcCChHHHHHHHHHHhccCCCCeE
Q 009517          141 SADSIERAW-QILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFP-ADPNDIFLTDGASPAVHMMMQLLIRSENDGI  218 (533)
Q Consensus       141 p~~v~~~~~-~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~-~~~~~i~~t~G~~~al~~~~~~l~~~~gd~V  218 (533)
                      |.+.+.++. +.+..... ....|++..|.++||++||+++.+++|.+ +++++|++|+|+++++..++.+++ ++||+|
T Consensus        54 P~~~~~~~~~~~~~~~~~-~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~-~~Gd~V  131 (420)
T d1vp4a_          54 PRKELAEIAKEIIEKEYH-YTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFL-DDESYC  131 (420)
T ss_dssp             CHHHHHHHHHHHHHHSHH-HHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHC-CTTCEE
T ss_pred             CHHHHHHHHHHHHhhCCc-cccCCCCCcCCHHHHHHHHHHHHHHhCCCCCCHHHeEeccchhhhHHHHHHhhh-cccccc
Confidence            655555544 44443221 34679999999999999999999999986 789999999999999999999998 899999


Q ss_pred             EEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcC--CCee-EEEEeCCCCCCccCCCHHHHHHH
Q 009517          219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKG--ITVR-ALVVINPGNPTGQVLAEENQRAI  295 (533)
Q Consensus       219 lv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g--~~~~-~iil~~p~NPtG~~~s~~~l~~i  295 (533)
                      ++++|+|+.|...++..|++++.++.++.   ++|++.++..+.......  .+++ ++++++||||||.+++.+++++|
T Consensus       132 lv~~P~y~~~~~~~~~~g~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i  208 (420)
T d1vp4a_         132 VLDDPAYLGAINAFRQYLANFVVVPLEDD---GMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKAL  208 (420)
T ss_dssp             EEEESCCHHHHHHHHTTTCEEEEEEEETT---EECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHH
T ss_pred             ccccccccchhHHHHHHhhhccccccccc---ccccchhhhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhh
Confidence            99999999999999999999999999865   789998888776543221  2344 44566999999999999999999


Q ss_pred             HHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHH
Q 009517          296 VDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQ  375 (533)
Q Consensus       296 ~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~  375 (533)
                      +++|++|+++||+||+|.++.|++. ...+....  .     ...++++++|+||.+  ++|+|+||+++   ++++++.
T Consensus       209 ~~~a~~~~i~ii~De~y~~l~~~~~-~~~~~~~~--~-----~~~~~i~~~s~sk~~--~~G~RiG~~~~---~~~~i~~  275 (420)
T d1vp4a_         209 VEIAEKYDLFIVEDDPYGALRYEGE-TVDPIFKI--G-----GPERVVLLNTFSKVL--APGLRIGMVAG---SKEFIRK  275 (420)
T ss_dssp             HHHHHHTTCEEEEECSSTTCBCSSC-CCCCHHHH--H-----CTTTEEEEEESTTTT--CGGGCEEEEEC---CHHHHHH
T ss_pred             hhhhhcccccccccchhhhccccCc-cccccccc--c-----cccceeEEecccccc--ccccccccccc---cchhhhh
Confidence            9999999999999999999999764 33343332  1     233678899999975  49999999998   9999999


Q ss_pred             HHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCceEecCCceeEE
Q 009517          376 IYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNS----LEGITCNKAEGAMYL  450 (533)
Q Consensus       376 l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~g~~~~~~~gg~~~  450 (533)
                      +.+... ...+++...|.+++.++....        +.++++.+++.|+++++.+.+.|.+    ++|+++..|+||||+
T Consensus       276 l~~~~~~~~~~~~~~~q~~~a~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~g~~~~~p~gg~f~  347 (420)
T d1vp4a_         276 IVQAKQSADLCSPAITHRLAARYLERYD--------LLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFI  347 (420)
T ss_dssp             HHHHHHHHHSSCCHHHHHHHHHHHHHSC--------HHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEE
T ss_pred             hhhhhhhccccCchhhhhhhhhhccccc--------ccccchhHHHHhhhhcccchhhhhhhhccCCCcEEecCCceEEE
Confidence            988776 567788999988888875432        4455677777888888887777765    478999999999999


Q ss_pred             ecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCC-CCCceEEEEec-CCcCcHHHHHHHHHHHHHHHH
Q 009517          451 FPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQV-PGTWHFRCTIL-PQEDKIPAIVTRLTDFHKNFM  528 (533)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~-~g~~~iRis~~-~~~e~i~~~~~~l~~~l~~~~  528 (533)
                      |++++  .+         .+ +..++ ++|+++||.+.||+.|+.. .+.++||||++ .++++|++++++|+++++++.
T Consensus       348 ~~~~~--~~---------~d-~~~~~-~~l~~~gV~v~PG~~F~~~~~~~~~iRls~~~~~~e~l~~a~~rL~~~l~~~~  414 (420)
T d1vp4a_         348 WLTLP--EG---------FD-TWEMF-EYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLREVVLEYG  414 (420)
T ss_dssp             EEECC--TT---------CC-TTTTH-HHHHHHTEECEEGGGGCTTCCCCSEEEEECSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEECC--CC---------CC-HHHHH-HHHHHCCeEEEechhhCCCCCCCCEEEEEeCcCCHHHHHHHHHHHHHHHHHhh
Confidence            97764  21         22 22333 5677899999999999843 34569999997 788899999999999999998


Q ss_pred             HHh
Q 009517          529 DKF  531 (533)
Q Consensus       529 ~~~  531 (533)
                      ++.
T Consensus       415 ~~~  417 (420)
T d1vp4a_         415 KEK  417 (420)
T ss_dssp             HHT
T ss_pred             Hhh
Confidence            763

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=100.00  E-value=9e-51  Score=420.54  Aligned_cols=347  Identities=19%  Similarity=0.314  Sum_probs=285.6

Q ss_pred             ccccCCCcccHHHHHHHHHHHHhhcC--CCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHH-hC
Q 009517          160 TGAYSHSQGIKGLRDTIAAGIEARDG--FPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL-HG  236 (533)
Q Consensus       160 ~~~Y~~~~G~~~lr~aia~~~~~~~g--~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~-~g  236 (533)
                      ...|++..|.++||+++|+++++++|  +++++++|++|+|+++++..++++++ +|||+|++++|+|+.+...+.. .|
T Consensus        77 ~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~l~-~pGd~Vlv~~P~y~~~~~~~~~~~g  155 (431)
T d1m7ya_          77 LALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLA-DPGEAVLIPTPYYPGFDRDLKWRTG  155 (431)
T ss_dssp             HHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHC-CTTCEEEEEESCCTTHHHHTTTTTC
T ss_pred             hcCCcCCcCcHHHHHHHHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHHHhc-CCCCEEEEeCCCchhHHHHHHHhcC
Confidence            34699999999999999999999887  45678999999999999999999998 8999999999999999888875 58


Q ss_pred             CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEcccccccc
Q 009517          237 GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENV  316 (533)
Q Consensus       237 ~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~  316 (533)
                      +++++++++++++|.+|++.+++++++..+.++++++++++|||||||.+++.+++++|+++|++||++||+||+|..+.
T Consensus       156 ~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~  235 (431)
T d1m7ya_         156 VEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTA  235 (431)
T ss_dssp             CEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGC
T ss_pred             ceeccccccchhcccccHHHhhhhhhhhhhccCcceEEEecCccccccccccccccccccccccccCcceeecccccccc
Confidence            99999999988899999999999999888888899999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCcccHHHHHhhcCCC---CCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhccccCChHHHHH
Q 009517          317 YVPEKKFHSFKKVSRSMGYG---EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQIL  393 (533)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~---~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a  393 (533)
                      |++ .++.++.++..+....   +...+++++.||||.+ |++|+|+||+++   +++++...........+.+...+.+
T Consensus       236 ~~~-~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~-~~~G~RiG~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~  310 (431)
T d1m7ya_         236 FSS-PSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDL-GLPGFRVGAIYS---NDDMVVAAATKMSSFGLVSSQTQHL  310 (431)
T ss_dssp             CSS-SCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSS-CCGGGCEEEEEE---SCHHHHHHHHHHGGGSCCCHHHHHH
T ss_pred             cCC-CCCCCHHHHhhhcccccccccCceEEEEecCcccc-cCCCCccceecc---chhhhHHHHHHHhccccccccccch
Confidence            976 3567776654432100   1123689999999999 899999999998   6666655544444445566666666


Q ss_pred             HHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChH
Q 009517          394 ASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDA  473 (533)
Q Consensus       394 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (533)
                      +.+.+.+       .....+++++++++++++++.+.+.|++. |+.+++|+||||+|++++....      .....++.
T Consensus       311 ~~a~l~~-------~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-gi~~~~p~gg~f~w~~l~~~~~------~~~~~~~~  376 (431)
T d1m7ya_         311 LSAMLSD-------KKLTKNYIAENHKRLKQRQKKLVSGLQKS-GISCLNGNAGLFCWVDMRHLLR------SNTFEAEM  376 (431)
T ss_dssp             HHHHHHC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCEECCCCSSSEEEEECGGGSS------SSSHHHHH
T ss_pred             hhhhhcc-------chhhhhhhhhhhhhhhhhhhhhhhhhhcC-CcEEecCCceeEEEEECccccc------cCcccCHH
Confidence            6665532       12234556778889999999999999986 9999999999999987652100      00011345


Q ss_pred             HHHHHHHHccceEEEcCCCCCCCCCCceEEEEec-CCcCcHHHHHHHHHHHHHHH
Q 009517          474 FYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       474 ~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~~~~l~~~l~~~  527 (533)
                      +++.++++++||.+.||+.|+. .+.+||||+++ .++++|+++++||+++++++
T Consensus       377 ~l~~~ll~~~gV~v~PG~~F~~-~~~~~~Ri~~a~~~e~~l~~al~rL~~~l~~~  430 (431)
T d1m7ya_         377 ELWKKIVYEVHLNISPGSSCHC-TEPGWFRVCFANLPERTLDLAMQRLKAFVGEY  430 (431)
T ss_dssp             HHHHHHHHTSCEECEEGGGGTC-SSTTEEEEECSSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCEEEEeccccCC-CCCCEEEEEeCcCCHHHHHHHHHHHHHHHHHh
Confidence            6788899999999999999984 45569999997 67778999999999999875

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=100.00  E-value=6.9e-51  Score=421.01  Aligned_cols=346  Identities=21%  Similarity=0.346  Sum_probs=283.6

Q ss_pred             ccccCCCcccHHHHHHHHHHHHhhcCC--CCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHH-hC
Q 009517          160 TGAYSHSQGIKGLRDTIAAGIEARDGF--PADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL-HG  236 (533)
Q Consensus       160 ~~~Y~~~~G~~~lr~aia~~~~~~~g~--~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~-~g  236 (533)
                      ...|++..|.++||++||+|+++++|.  ++++++|++|+|+++++..++.+++ ++||+|++++|+|+.|...+.. .|
T Consensus        76 ~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~~l~-~~Gd~Vlv~~P~y~~~~~~~~~~~g  154 (428)
T d1iaya_          76 IANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLA-DPGDAFLVPSPYYPAFNRDLRWRTG  154 (428)
T ss_dssp             HHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHC-CTTCEEEEESSCCTTHHHHTTTTTC
T ss_pred             hccCcCCcchHHHHHHHHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHHHHhC-CCCCEEEEccCCchHHHHHHHHhcC
Confidence            457999999999999999999998875  4678999999999999999999999 8999999999999999887775 48


Q ss_pred             CeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEcccccccc
Q 009517          237 GTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENV  316 (533)
Q Consensus       237 ~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~  316 (533)
                      +++++++++..++|.+|+++++.+++.....++++++|++++||||||.+++.+++++|+++|++||++||+||+|.++.
T Consensus       155 ~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~  234 (428)
T d1iaya_         155 VQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATV  234 (428)
T ss_dssp             CEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGC
T ss_pred             CeEEEeecccccccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccccc
Confidence            99999999998899999999999988877778899999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCcccHHHHHhhcCCC-CCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhccccCChHHHHHHH
Q 009517          317 YVPEKKFHSFKKVSRSMGYG-EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILAS  395 (533)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~-~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~  395 (533)
                      |++. ++.++.++....... ....+++++.||||.| +++|+|+||+++  .++.+++.+..... ....+...|.++.
T Consensus       235 ~~~~-~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~-~~~GlRiG~~~~--~~~~l~~~~~~~~~-~~~~~~~~~~~~~  309 (428)
T d1iaya_         235 FDTP-QFVSIAEILDEQEMTYCNKDLVHIVYSLSKDM-GLPGFRVGIIYS--FNDDVVNCARKMSS-FGLVSTQTQYFLA  309 (428)
T ss_dssp             CSSS-CCCCHHHHHTSGGGTTSCTTSEEEEEESTTTS-SCGGGCEEEEEE--SCHHHHHHHHHHHT-TSCCCHHHHHHHH
T ss_pred             cCcc-cccccccccchhhccccccceEEEEecCCCcc-cCCCcccccccc--cccchhhhhhhhhc-ccccccccccchh
Confidence            9763 567776654321100 1234689999999999 899999999997  35666666655543 3456677777766


Q ss_pred             HHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHH
Q 009517          396 LVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFY  475 (533)
Q Consensus       396 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (533)
                      +.+...       ....+++++.++.++++++.+.+.|+.. |+++.+|+||||+|++++....      .....++..+
T Consensus       310 a~l~~~-------~~~~~~~~~~~~~l~~r~~~~~~~L~~~-gi~~~~p~gg~f~w~~l~~~~~------~~~~~~~~~l  375 (428)
T d1iaya_         310 AMLSDE-------KFVDNFLRESAMRLGKRHKHFTNGLEVV-GIKCLKNNAGLFCWMDLRPLLR------ESTFDSEMSL  375 (428)
T ss_dssp             HHTTCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBCCCSSSSEEEEECGGGCS------SSSHHHHHHH
T ss_pred             hhhhhh-------ccccccccccccccchhHHHHHHHHHhC-CCEEecCCcceEEEEECccccc------cCCCCCHHHH
Confidence            666531       1223456778888999999999999886 9999999999999987651100      0011234567


Q ss_pred             HHHHHHccceEEEcCCCCCCCCCCceEEEEec-CCcCcHHHHHHHHHHHHHH
Q 009517          476 CRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-PQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       476 ~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~~~~l~~~l~~  526 (533)
                      +.++++++||.+.||..|+ ..+.+||||+++ .++++|+++++||++++..
T Consensus       376 ~~~Ll~~~gV~v~PG~~F~-~~~~g~~Ris~a~~~~~~l~~al~Rl~~~l~~  426 (428)
T d1iaya_         376 WRVIINDVKLNVSPGSSFE-CQEPGWFRVCFANMDDGTVDIALARIRRFVGV  426 (428)
T ss_dssp             HHHHHHTSCEECEEGGGGT-CSSSSEEEEECSSSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhCCEEEEcchhcC-CCCCCEEEEEeCCCCHHHHHHHHHHHHHHHhh
Confidence            7888999999999999998 455669999997 6667899999999998864

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=100.00  E-value=8.1e-51  Score=417.65  Aligned_cols=389  Identities=19%  Similarity=0.296  Sum_probs=305.5

Q ss_pred             cCcccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCC
Q 009517           61 LNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLF  140 (533)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~  140 (533)
                      +++++..++.+.++++...+.     .++         +|||++|+|+.                            ..+
T Consensus         7 ~~~~~~~~~~s~ire~~~~~~-----~~~---------~i~l~~G~P~~----------------------------~~~   44 (403)
T d1wsta1           7 FSEKAMLMKASEVRELLKLVE-----TSD---------VISLAGGLPAP----------------------------ETF   44 (403)
T ss_dssp             CCHHHHHCCCHHHHHHHHHHT-----SSS---------CEECCCCCCCG----------------------------GGS
T ss_pred             HHHHHhcCCCcHHHHHHHHhC-----CCC---------cEECCCCCCCc----------------------------ccc
Confidence            456777777776655544332     233         99999999972                            223


Q ss_pred             CHHHHHH-HHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEE
Q 009517          141 SADSIER-AWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGIL  219 (533)
Q Consensus       141 p~~v~~~-~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vl  219 (533)
                      |.+.+++ +.+.+..... ....|++..|.++||+++|+++++++|.++++++|++|+|+++++..++++++ ++||+|+
T Consensus        45 P~~~~~~~~~~~~~~~~~-~~~~Y~~~~G~~~lR~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~l~-~~gd~v~  122 (403)
T d1wsta1          45 PVETIKKIAVEVLEEHAD-KALQYGTTKGFTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFL-NPGDPIV  122 (403)
T ss_dssp             CHHHHHHHHHHHHHHSHH-HHHSCCCSSCCHHHHHHHHHHHHHHHCCCCTTCEEEEESSHHHHHHHHHHHHC-CTTCEEE
T ss_pred             CHHHHHHHHHHHHHhCcc-cccCCCCCcCCHHHHHHHHHHHHHHhCCCCChHHeeecccchHHHHHHHHHHh-hcCCccc
Confidence            6655555 4455544221 35679999999999999999999999999999999999999999999999998 8999999


Q ss_pred             EcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhc-CCCeeEEEEeCCCCCCccCCCHHHHHHHHHH
Q 009517          220 CPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAK-GITVRALVVINPGNPTGQVLAEENQRAIVDF  298 (533)
Q Consensus       220 v~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~-g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l  298 (533)
                      +++|+|..|...+..+|++++.++.++.   +.+...+.......... .+...++++++||||||.+++.+++++|+++
T Consensus       123 ~~~P~y~~~~~~~~~~g~~~~~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~  199 (403)
T d1wsta1         123 VEAPTYLAAIQAFKYYDPEFISIPLDDK---GMRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLEL  199 (403)
T ss_dssp             EEESCCHHHHHHHHTTCCEEEEEEEETT---EECHHHHHHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHH
T ss_pred             cCCCcchhhhHHHhhccccceeEeeccc---CCccccccccchhhhhccccccccccccccCCCCCccCCHHHHHHHHHH
Confidence            9999999999999999999999999875   34444444433332222 2345566777999999999999999999999


Q ss_pred             HHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHH
Q 009517          299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYK  378 (533)
Q Consensus       299 ~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~  378 (533)
                      |++||++||+||+|.++.|++. +..++...       +...++++++||||.+ + +|+|+||+++   ++++++.+..
T Consensus       200 a~~~~~~li~De~y~~l~~~~~-~~~~~~~~-------~~~~~~i~~~S~SK~~-~-~G~RiG~~i~---~~~~i~~~~~  266 (403)
T d1wsta1         200 ANEYDFLIVEDGPYSELRYSGE-PTPPIKHF-------DDYGRVIYLGTFSKIL-A-PGFRIGWVAA---HPHLIRKMEI  266 (403)
T ss_dssp             HHHTTCEEEEECTTTTCBCSSC-CCCCGGGG-------CSSSCEEEEEESTTTT-C-GGGCCEEEEE---CHHHHHHHHH
T ss_pred             HHhcCceeccccchhheecCCC-CCCccccc-------CCCCcEEEEcccccee-c-Cccccccccc---chHHHHHHHH
Confidence            9999999999999999999764 44444332       3445789999999987 5 8999999998   9999998887


Q ss_pred             hhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCceEecCCceeEEecccC
Q 009517          379 VAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL--EGITCNKAEGAMYLFPRIQ  455 (533)
Q Consensus       379 ~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~g~~~~~~~gg~~~~~~~~  455 (533)
                      ... ...+++...|.+...++...        ....+++++++.++++++.+.+.|.+.  .|+.+..|+||+|+|++++
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~p~gg~~~~~~~~  338 (403)
T d1wsta1         267 AKQSIDLCTNTFGQAIAWKYVENG--------YLDEHIPKIIEFYKPRRDAMLEALEEYMPEGVEWTKPEGGMFVRVTLP  338 (403)
T ss_dssp             HHHHHHSSCCHHHHHHHHHHHHTT--------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSBSSEEEEECC
T ss_pred             HHhhhccccccchhhhHHhhhhcc--------ccchhHHHHHHHHHHHHHHHHHHHHhhccCCeEEeCCCceeEEEEECC
Confidence            765 56778888888777766532        234556778888889999999999874  5789999999999997665


Q ss_pred             CCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCC-CCCCceEEEEec-CCcCcHHHHHHHHHHHHHHHHHH
Q 009517          456 LPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ-VPGTWHFRCTIL-PQEDKIPAIVTRLTDFHKNFMDK  530 (533)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~-~~g~~~iRis~~-~~~e~i~~~~~~l~~~l~~~~~~  530 (533)
                        .+         .+ ...+ .++|.++||.++||+.|+. ..+.++|||+++ .++++|++++++|++++++..++
T Consensus       339 --~~---------~~-~~~~-~~~l~~~gV~v~pg~~f~~~~~~~~~iRi~~~~~~~~~l~~al~rl~~~l~~~~k~  402 (403)
T d1wsta1         339 --EG---------ID-TKLM-MERAVAKGVAYVPGEAFFVHRDKKNTMRLNFTYVPEETIREGVRRLAETIKEEMKR  402 (403)
T ss_dssp             --TT---------CC-TTTT-HHHHHHTTEECEEGGGGSTTCCCCSEEEEECSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --CC---------CC-HHHH-HHHHHHCCEEEEechhhcCCCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhc
Confidence              21         12 2223 3556678999999999974 234569999997 78899999999999999988775

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=100.00  E-value=3.2e-51  Score=420.18  Aligned_cols=381  Identities=15%  Similarity=0.156  Sum_probs=300.9

Q ss_pred             ccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHH
Q 009517           64 KVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSAD  143 (533)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~  143 (533)
                      -+.++++.|.++|+..++.++++.        .+++|||++|.|.....+|+                        +++.
T Consensus         3 ~~~~~~~~p~d~i~~~~~~~~~d~--------~~~~InL~iG~~~d~~~~~~------------------------~~~~   50 (401)
T d7aata_           3 WWSHVEMGPPDPILGVTEAFKRDT--------NSKKMNLGVGAYRDDNGKPY------------------------VLNC   50 (401)
T ss_dssp             SSTTCCCCCCCHHHHHHHHHHHCC--------CTTCEECCCCSCCCTTSCCC------------------------CCHH
T ss_pred             ccccCCCCCCChHHHHHHHHhCCC--------CCCcEEccCCCCcCCCCCCC------------------------CCHH
Confidence            466778888888999998888733        34589999997654222221                        1355


Q ss_pred             HHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCCh-----HHHHHHHHHHhccCCCCeE
Q 009517          144 SIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGA-----SPAVHMMMQLLIRSENDGI  218 (533)
Q Consensus       144 v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~-----~~al~~~~~~l~~~~gd~V  218 (533)
                      |.++..+.+.+ .  ..++|+|..|.++||+++++++.++++..+.+++|+.+.|+     .+++..+++.++ +|||+|
T Consensus        51 V~~a~~~~~~~-~--~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~l~-~pGd~V  126 (401)
T d7aata_          51 VRKAEAMIAAK-K--MDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFF-KFSRDV  126 (401)
T ss_dssp             HHHHHHHHHHT-T--CCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHC-TTCCEE
T ss_pred             HHHHHHHHhhC-C--CCCCCCCCCCCHHHHHHHHHHHhccCCcccCcCceEEeccchHHHHHHHHHHhhHhhc-CCCceE
Confidence            55555554444 2  24689999999999999999999988877788888766543     357788888888 899999


Q ss_pred             EEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHH
Q 009517          219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF  298 (533)
Q Consensus       219 lv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l  298 (533)
                      ++++|+|++|..+++.+|++++.+|+.++++|.+|++.+++.+...   .++++++++++||||||.+++.+++++|+++
T Consensus       127 lv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~  203 (401)
T d7aata_         127 YLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKI---PEKSIILLHACAHNPTGVDPRQEQWKELASV  203 (401)
T ss_dssp             EEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHH
T ss_pred             EEecCCCcchhhHHHHcCCeEEEEeccccccccccHHHHHHHHhcC---CCceEEEEecCCCCCccccCCHHHHHHHHHH
Confidence            9999999999999999999999999988888999999999888642   3478999999999999999999999999999


Q ss_pred             HHHcCCEEEEccccccccccCCCCcccHH-HHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHH
Q 009517          299 CKKEGLVLLADEVYQENVYVPEKKFHSFK-KVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY  377 (533)
Q Consensus       299 ~~~~~~~lI~De~y~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~  377 (533)
                      |++|+++||+||+|.++.|++.. ..+.. .....     ...+++++.|+||.+ +++|||+||+++   +.++++.+.
T Consensus       204 a~~~~~~ii~De~Y~~l~~~~~~-~~~~~~~~~~~-----~~~~~~~~~s~sk~~-~~~G~RiG~~~~---~~~~~~~~~  273 (401)
T d7aata_         204 VKKRNLLAYFDMAYQGFASGDIN-RDAWALRHFIE-----QGIDVVLSQSYAKNM-GLYGERAGAFTV---ICRDAEEAK  273 (401)
T ss_dssp             HHHTTCEEEEEESCTTTTTSCHH-HHTHHHHHHHH-----TTCCCEEEEECTTTS-CCGGGCEEEEEE---ECSSHHHHH
T ss_pred             HhcceEEEEEeccchhhhcCCcc-cchhhhhhhhh-----hhcccceeEeccccc-eeeccccceeec---chHHHHHHH
Confidence            99999999999999999996532 11211 11122     233568899999998 899999999998   554444433


Q ss_pred             Hh-------h-hccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CceEecCCc
Q 009517          378 KV-------A-SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLE---GITCNKAEG  446 (533)
Q Consensus       378 ~~-------~-~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---g~~~~~~~g  446 (533)
                      +.       . ....+++.+.|.++...+.++    .....+..+.+.++++|+++|+.+.+.|+++.   .|.++.|+|
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~  349 (401)
T d7aata_         274 RVESQLKILIRPMYSNPPMNGARIASLILNTP----ELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQI  349 (401)
T ss_dssp             HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHCC
T ss_pred             HHHHHHHHHhhccccccchHHHHHHHHhcCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceECCCC
Confidence            32       1 245788899999998888753    34556677788999999999999999999871   267789999


Q ss_pred             eeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec-CCcCcHHHHHHHHHHHHH
Q 009517          447 AMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-PQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       447 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~~~~l~~~l~  525 (533)
                      |||+|++++                 .+++.+|++|+||++.||           +|||++ +++++|+.++++|+++++
T Consensus       350 G~F~~~~ls-----------------~e~~~~L~~e~gV~~~pg-----------~Ris~a~~~~~~i~~la~ai~~v~k  401 (401)
T d7aata_         350 GMFCFTGLK-----------------PEQVERLTKEFSIYMTKD-----------GRISVAGVASSNVGYLAHAIHQVTK  401 (401)
T ss_dssp             SSEEECCCC-----------------HHHHHHHHHHHCEECCTT-----------CEEEGGGCCTTTHHHHHHHHHHHHC
T ss_pred             eEEEecCCC-----------------HHHHHHHHHhCCEEECCC-----------cEEEeccCCHHHHHHHHHHHHHHhC
Confidence            999996543                 234778899999999985           299997 899999999999998864

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8.3e-51  Score=411.37  Aligned_cols=356  Identities=15%  Similarity=0.223  Sum_probs=288.7

Q ss_pred             eeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHH
Q 009517           99 ILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAA  178 (533)
Q Consensus        99 ~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~  178 (533)
                      +|+|++|+|++                      ++       |+.+.+++.+.+..    ...+|++..| .++|+++++
T Consensus         1 ~~~~~~~~~df----------------------~~-------p~~i~eal~~~~~~----~~~~Y~~~~g-~~lr~~ia~   46 (361)
T d1d2fa_           1 LLPFTISDMDF----------------------AT-------APCIIEALNQRLMH----GVFGYSRWKN-DEFLAAIAH   46 (361)
T ss_dssp             CEECCSSSCSS----------------------CC-------CHHHHHHHHHHHTT----CCCCCCCSCC-HHHHHHHHH
T ss_pred             CcCcCCCCCCC----------------------CC-------CHHHHHHHHHHHhC----CCCCCCCCCC-HHHHHHHHH
Confidence            58999999996                      44       78999999988875    3568999988 689999999


Q ss_pred             HHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCC-CCCCCCHHHH
Q 009517          179 GIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEA-TGWGLETSEV  257 (533)
Q Consensus       179 ~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~-~~~~ld~~~l  257 (533)
                      ++.+++|.++++++|++|+|+++++..++.+++ ++||+|++++|+|++|..+++..|.+++.++.+.. ++|.+|++.+
T Consensus        47 ~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l~-~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~~  125 (361)
T d1d2fa_          47 WFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWS-ETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKL  125 (361)
T ss_dssp             HHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSS-CTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHH
T ss_pred             HHHHHhCCCCCcceEEEeCCHHHHHHHHhhhcc-ccccccccccccccchhHHHHhhcceEEeecccccccccccccccc
Confidence            999999999999999999999999999999998 89999999999999999999999999999987653 4677999999


Q ss_pred             HHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCC
Q 009517          258 KKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGE  337 (533)
Q Consensus       258 ~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~  337 (533)
                      ++.+...     ++++|++++||||||.+++.+++++|+++|+++|++||+||+|.++.|++. ...++...       .
T Consensus       126 ~~~~~~~-----~~~~i~l~~p~NPTG~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~-~~~~~~~~-------~  192 (361)
T d1d2fa_         126 EAVLAKP-----ECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQ-PHIPWSNV-------A  192 (361)
T ss_dssp             HHHHTST-----TEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSS-CCCCGGGT-------C
T ss_pred             hhhcccC-----CceeEEecccccccccccchhhhhhhhhhhhhhheeeeecccccccccccc-cccccccc-------c
Confidence            9998653     899999999999999999999999999999999999999999999998654 33333222       2


Q ss_pred             CCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHH-HHhhh--ccccCChHHHHHHHHHcCCCCCCChhHHHHHHH
Q 009517          338 KDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQI-YKVAS--VNLCSNISGQILASLVMSPPKVGDESYESYCAE  414 (533)
Q Consensus       338 ~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l-~~~~~--~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~  414 (533)
                      + .+++++.|+||.+ +++|+|+||+.+  .++...... .....  ...+++...+.++...+.          ...++
T Consensus       193 ~-~~~v~~~s~SK~~-~~~g~R~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~----------~~~~~  258 (361)
T d1d2fa_         193 R-GDWALLTSGSKSF-NIPALTGAYGII--ENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQ----------QGAPW  258 (361)
T ss_dssp             C-SSEEEEECSHHHH-TCGGGCCEEEEE--CSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHH----------HCHHH
T ss_pred             c-ccccccccccccc-ccccccceeeec--chhHHHHHHhhhcccccccccchhhhHHHHHHHhh----------ccchh
Confidence            2 2578899999999 899999999987  234443333 33333  223344444444433332          12244


Q ss_pred             HHHHHHHHHHHHHHHHHHHhc-CCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCC
Q 009517          415 RDGILSSLARRAKTLEDAFNS-LEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGF  493 (533)
Q Consensus       415 ~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f  493 (533)
                      .++++..++++++.+.+.+.+ .+++.+..|+||||+|++++..           ..++..++.++++++||.+.||+.|
T Consensus       259 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~gg~~~~~~l~~~-----------~~~~~~~~~~Ll~~~gv~v~pG~~F  327 (361)
T d1d2fa_         259 LDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLDLRPL-----------NIDDNALQKALIEQEKVAIMPGYTY  327 (361)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSBCSEEEEECGGG-----------CCCHHHHHHHHHHTTCEECEEGGGG
T ss_pred             hhcccccchhhHHHHHHHhhhhcccccccccCceeEEEEEccCC-----------CCCHHHHHHHHHHhCCEEEEecccc
Confidence            567778888888888887765 4678889999999999876411           1246677888899999999999999


Q ss_pred             CCCCCCceEEEEecCCcCcHHHHHHHHHHHHHHHH
Q 009517          494 GQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKNFM  528 (533)
Q Consensus       494 ~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~~~~  528 (533)
                      + ..+.++||||++.++++|++++++|++++++++
T Consensus       328 ~-~~~~~~vRis~~~~~e~l~~al~rl~~~l~~lr  361 (361)
T d1d2fa_         328 G-EEGRGFVRLNAGCPRSKLEKGVAGLINAIRAVR  361 (361)
T ss_dssp             C-GGGTTEEEEECCSCHHHHHHHHHHHHHHHHHHC
T ss_pred             C-CCCCCEEEEEEcCCHHHHHHHHHHHHHHHHhcC
Confidence            8 456679999999888999999999999998863

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=3.2e-50  Score=408.17  Aligned_cols=363  Identities=22%  Similarity=0.351  Sum_probs=301.7

Q ss_pred             cCcccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCC
Q 009517           61 LNPKVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLF  140 (533)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~  140 (533)
                      ++++...++.+++..+...|++.     .         +|||++|+|++                      ++       
T Consensus         3 ~~~~~~~~~~~~~~~~~~la~~~-----~---------~I~ls~g~p~~----------------------~~-------   39 (368)
T d1v2da_           3 LHPRTEAAKESIFPRMSGLAQRL-----G---------AVNLGQGFPSN----------------------PP-------   39 (368)
T ss_dssp             CCGGGGGC---CHHHHHHHHHHH-----T---------CEECCCCSCSS----------------------CC-------
T ss_pred             CChhhhhcCCCHHHHHHHHhccC-----C---------CEEecCCCCCC----------------------CC-------
Confidence            46788888888776666555553     3         89999999985                      32       


Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      |+.+++++.+.+.+     ...|++..|.++||++||++++      +++++|++|+|+++++..++..++ .+||.|++
T Consensus        40 p~~i~~al~~~l~~-----~~~Y~~~~G~~elr~aiA~~~~------~~~~~Iiit~G~~~al~~~~~~l~-~~~d~v~~  107 (368)
T d1v2da_          40 PPFLLEAVRRALGR-----QDQYAPPAGLPALREALAEEFA------VEPESVVVTSGATEALYVLLQSLV-GPGDEVVV  107 (368)
T ss_dssp             CHHHHHHHHHHTTT-----SCSCCCTTCCHHHHHHHHHHHT------SCGGGEEEESSHHHHHHHHHHHHC-CTTCEEEE
T ss_pred             CHHHHHHHHHHhhc-----ccCCCCCcCCHHHHHHHHhhcc------cCCcceeeccchHHHHHHHhhccc-cccccccc
Confidence            78899998887764     4689999999999999999985      789999999999999999999998 89999999


Q ss_pred             cCCcCcchHHHHHHhCCeEEEEecCC-CCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHH
Q 009517          221 PIPQYPLYSASIALHGGTLVPYYLDE-ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC  299 (533)
Q Consensus       221 ~~p~~~~~~~~~~~~g~~~~~v~~~~-~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~  299 (533)
                      ++|+|+.+...+...|.+++.++++. .+++.+|++.+++++++      .++++++++||||||.+++.+++++|+++|
T Consensus       108 ~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~~~~p~NPtG~~~~~~~l~~l~~~a  181 (368)
T d1v2da_         108 LEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTP------RTRALLLNTPMNPTGLVFGERELEAIARLA  181 (368)
T ss_dssp             EESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHH
T ss_pred             cCCcchhhhhHHHhcCCccceeccccccccccCCHHHHHHhhcc------CceEEEEcCCCCcccccCCHHHHHHHHHHH
Confidence            99999999999999999999988754 34678999999999987      799999999999999999999999999999


Q ss_pred             HHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHh
Q 009517          300 KKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV  379 (533)
Q Consensus       300 ~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~  379 (533)
                      ++||+++|+||+|..+.+....  ......        ....++++.|+||.+ +++|+|+||+++   ++++++.+.+.
T Consensus       182 ~~~~i~ii~D~~~~~~~~~~~~--~~~~~~--------~~~~~~~~~~~sk~~-~~~G~R~g~~~~---~~~~~~~~~~~  247 (368)
T d1v2da_         182 RAHDLFLISDEVYDELYYGERP--RRLREF--------APERTFTVGSAGKRL-EATGYRVGWIVG---PKEFMPRLAGM  247 (368)
T ss_dssp             HHTTCEEEEECTTTTCBSSSCC--CCHHHH--------CTTTEEEEEEHHHHT-TCGGGCCEEEEC---CTTTHHHHHHH
T ss_pred             HHcCCeeeechhhhhhcccccc--cccccc--------cccccceeecccccc-cccccccccccc---cccccchhhhh
Confidence            9999999999999987665432  222111        122457789999988 899999999998   89999888887


Q ss_pred             hh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCH
Q 009517          380 AS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPE  458 (533)
Q Consensus       380 ~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~  458 (533)
                      .. ...+++.+.|.++..++..        ..+.++++.+++.++++++++.+.|+++ |+++..|+|++|+|++++  .
T Consensus       248 ~~~~~~~~~~~~q~~~~~~l~~--------~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~p~g~~~~~~~l~--~  316 (368)
T d1v2da_         248 RQWTSFSAPTPLQAGVAEALKL--------ARREGFYEALREGYRRRRDLLAGGLRAM-GLRVYVPEGTYFLMAELP--G  316 (368)
T ss_dssp             HHHHTSSCCHHHHHHHHHHHHH--------HHHTTHHHHHHHHHHHHHHHHHHHHHHT-TCCEECCSBSSEEEEECT--T
T ss_pred             hhcccccccccccccccccccc--------ccchhhHHHHHHHHHHhhhhhhhhHHhc-CcEEecCCceeEEEEeCC--c
Confidence            76 6688889999888887742        1233457788889999999999999998 999999999999997765  1


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCC-CCCCceEEEEecCCcCcHHHHHHHHHHHH
Q 009517          459 KAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ-VPGTWHFRCTILPQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~-~~g~~~iRis~~~~~e~i~~~~~~l~~~l  524 (533)
                                .  +   +.++|+++||.++||+.|+. ..+.++||||++.++|+|++++++|++++
T Consensus       317 ----------~--~---~~~ll~~~gI~v~pg~~F~~~~~~~~~iRis~~~~~e~i~~ai~rL~~~l  368 (368)
T d1v2da_         317 ----------W--D---AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGRVV  368 (368)
T ss_dssp             ----------C--C---HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCSCHHHHHHHHHHHHHHC
T ss_pred             ----------c--H---HHHHHHhCCEEEEechhhCCCCCCCCEEEEEecCCHHHHHHHHHHHHHhC
Confidence                      1  1   23578889999999999974 34567999999988899999999999874

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=100.00  E-value=9e-49  Score=402.96  Aligned_cols=388  Identities=16%  Similarity=0.158  Sum_probs=295.0

Q ss_pred             cccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHH
Q 009517           65 VLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADS  144 (533)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v  144 (533)
                      +..++..|.++|+..+++++++        +.+++|||++|.+...+.+|+                         +.++
T Consensus         5 ~~~~~~~~~d~i~~~~~~~~~d--------~~~~kInL~iG~~~d~~g~~~-------------------------~~~~   51 (412)
T d1yaaa_           5 FNNIELLPPDALFGIKQRYGQD--------QRATKVDLGIGAYRDDNGKPW-------------------------VLPS   51 (412)
T ss_dssp             TTTCCCCCCCTTHHHHHHHHTC--------CCSSCEECSSCCCBCTTSCBC-------------------------CCHH
T ss_pred             hhcCCcCCCChHHHHHHHHhcC--------CCCCcEEeecCCCcCCCCCCC-------------------------CcHH
Confidence            4446666666788999888863        334589999996543222221                         2345


Q ss_pred             HHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEc--CChHHHHHHHH--HHhccCCCCeEEE
Q 009517          145 IERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLT--DGASPAVHMMM--QLLIRSENDGILC  220 (533)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t--~G~~~al~~~~--~~l~~~~gd~Vlv  220 (533)
                      ++++.+.+..... ..++|+|..|.++||+++++++.++++.....+.++.+  .|+..++..++  .... .+||+|++
T Consensus        52 V~~A~~~l~~~~~-~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gd~Vli  129 (412)
T d1yaaa_          52 VKAAEKLIHNDSS-YNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKF-FPDKLVYL  129 (412)
T ss_dssp             HHHHHHHHHTCTT-CCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHH-CTTCCEEE
T ss_pred             HHHHHHHHHhCcc-cCCCCCCCCCCHHHHHHHHHHHhcccCccccccceeEEecccchhHHHHHHHHHhcc-CCCCEEec
Confidence            5556666654433 46789999999999999999999887765555555443  44555544443  3334 68999999


Q ss_pred             cCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHH
Q 009517          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (533)
Q Consensus       221 ~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~  300 (533)
                      ++|+|+.|...+..+|++++.+++..++++.+|.+.+++.+...   .++++++++++||||||.++|+++|++|+++|+
T Consensus       130 p~P~~~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~  206 (412)
T d1yaaa_         130 SKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKA---PEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIA  206 (412)
T ss_dssp             EESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHS---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHH
T ss_pred             ccccCchhHHHHHHcCCceecccccccccccccchhhhcccccC---CCceEEEEecCCCCCccccCCHHHHHHHHhhhc
Confidence            99999999999999999999999988888999999999988763   235778888899999999999999999999999


Q ss_pred             HcCCEEEEccccccccccCCCCcccHH--HHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCH----HHHH
Q 009517          301 KEGLVLLADEVYQENVYVPEKKFHSFK--KVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSA----EVRE  374 (533)
Q Consensus       301 ~~~~~lI~De~y~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~----~~~~  374 (533)
                      +++++||+||+|.+|.|++.. ..+..  ......   +...++|++.||||.+ +++|||+||+++.....    +..+
T Consensus       207 ~~~~~ii~De~Y~~l~~~~~~-~~~~~~~~~~~~~---~~~~~~i~~~s~SK~~-~~~G~RiG~~~~~~~~~~~~~~~~~  281 (412)
T d1yaaa_         207 SKNHIALFDTAYQGFATGDLD-KDAYAVRLGVEKL---STVSPVFVCQSFAKNA-GMYGERVGCFHLALTKQAQNKTIKP  281 (412)
T ss_dssp             HTTCEEEEEESCTTTSSSCHH-HHTHHHHHHHHHT---TTTCCEEEEEECTTTS-CCGGGCEEEEEEECCSCTTHHHHHH
T ss_pred             cCCEEEeecceeeecccCCcc-cchhhhhhhhhcc---ccCCCeEEEEecCCcc-ccCcCceEEEEEchhhhhhHHHHHH
Confidence            999999999999999997532 12211  111111   2344689999999999 89999999999832111    1111


Q ss_pred             ----HHHHhh-hccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CC-ceEecCCc
Q 009517          375 ----QIYKVA-SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL--EG-ITCNKAEG  446 (533)
Q Consensus       375 ----~l~~~~-~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~g-~~~~~~~g  446 (533)
                          .+.... .+..+++.++|.++..++.++    ..++++.++++.+++.|+++|+.+.+.|+++  ++ |.++.|+|
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~~~~g  357 (412)
T d1yaaa_         282 AVTSQLAKIIRSEVSNPPAYGAKIVAKLLETP----ELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQC  357 (412)
T ss_dssp             HHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCC
T ss_pred             HHHHHHHHHHHHHhcCCChHHHHHHHHHhcCh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceeCCCc
Confidence                111222 366889999999999998763    3566778889999999999999999999886  22 77889999


Q ss_pred             eeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec-CCcCcHHHHHHHHHHHHH
Q 009517          447 AMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-PQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       447 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~~~~l~~~l~  525 (533)
                      |||+|++++                 .+++++|++++||++.||.           |||++ +++++|+.++++|+++++
T Consensus       358 G~F~~~~ls-----------------~e~~~~L~~e~~V~~~~g~-----------Ris~~g~~~~~i~~l~~ai~~v~k  409 (412)
T d1yaaa_         358 GMFSFTGLT-----------------PQMVKRLEETHAVYLVASG-----------RASIAGLNQGNVEYVAKAIDEVVR  409 (412)
T ss_dssp             SSEEECCCC-----------------HHHHHHHHHHHCEECCTTS-----------EEEGGGCCTTTHHHHHHHHHHHHH
T ss_pred             eEEEecCcC-----------------HHHHHHHHHhCCEEECCCC-----------EEEeccCCHHHHHHHHHHHHHHHH
Confidence            999996543                 3357889999999999852           99996 899999999999999887


Q ss_pred             HH
Q 009517          526 NF  527 (533)
Q Consensus       526 ~~  527 (533)
                      .+
T Consensus       410 ~~  411 (412)
T d1yaaa_         410 FY  411 (412)
T ss_dssp             HC
T ss_pred             hh
Confidence            53

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.6e-50  Score=409.79  Aligned_cols=383  Identities=16%  Similarity=0.142  Sum_probs=298.3

Q ss_pred             cccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHH
Q 009517           65 VLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADS  144 (533)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v  144 (533)
                      +.++++.|.++|+...++++.+        |.+++|||++|.|.....+|+                         ..+.
T Consensus         2 ~~~~~~~~~dpi~~~~~~~~~d--------~~~~kInL~iG~~~d~~g~~p-------------------------~~~~   48 (397)
T d3tata_           2 FQKVDAYAGDPILTLMERFKED--------PRSDKVNLSIGLYYNEDGIIP-------------------------QLQA   48 (397)
T ss_dssp             CCCCCCCCCCTTTTHHHHHHHS--------CCSSCEECSCCSCCCTTSSCC-------------------------CCHH
T ss_pred             cccCCCCCCCcHHHHHHHHhcC--------CCCCcEEccCCCCcCCCCCCC-------------------------CcHH
Confidence            5678889999999999999863        334589999997654221111                         2344


Q ss_pred             HHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHH----HHHHHHHhccCCCCeEEE
Q 009517          145 IERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPA----VHMMMQLLIRSENDGILC  220 (533)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~a----l~~~~~~l~~~~gd~Vlv  220 (533)
                      ++++.+.+..... ..+.|+|..|+++||+++|+++.++++..+++++|+++.|++++    +.+++..+. ++||+|++
T Consensus        49 V~~A~~~l~~~~~-~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~-~pgd~Vlv  126 (397)
T d3tata_          49 VAEAEARLNAQPH-GASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRY-FPESGVWV  126 (397)
T ss_dssp             HHHHHHHHTTSCC-SSBCCCCTTCCHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHHHHHHHHHHHHHHH-CSSCCCEE
T ss_pred             HHHHHHHHHhCcc-cCCCCCCcccCHHHHHHHHHHHhhccCCcCCcCcEEEecCchhHHHHHHHHHHhhhc-CCCCccee
Confidence            4445555544333 46789999999999999999999988888889999988877664    555555666 89999999


Q ss_pred             cCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHH
Q 009517          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (533)
Q Consensus       221 ~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~  300 (533)
                      ++|+|++|..+++.+|++++.+|++.++++.+|.+.+.+.+...   .++++++++++||||||.++|.+++++|+++|+
T Consensus       127 ~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~  203 (397)
T d3tata_         127 SDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTL---PARSIVLLHPCCHNPTGADLTNDQWDAVIEILK  203 (397)
T ss_dssp             CSSCCTTHHHHHHTTTCCCEECCCCCTTTSSCCHHHHHHHHTTC---CSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHH
T ss_pred             cccCccccHHHHHHcCCEEEEEecchhhccccchHHHHHHhhhc---ccccEEEEecCCCCCCCeeCCHHHHHHHHHHHh
Confidence            99999999999999999999999999988999999988877643   336778888999999999999999999999999


Q ss_pred             HcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHH----
Q 009517          301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQI----  376 (533)
Q Consensus       301 ~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l----  376 (533)
                      +|+++||+||+|.++.|++.. ..+......+     ...++|++.||||++ +++|||+||+++.....+....+    
T Consensus       204 ~~~~~ii~De~Y~~l~~~~~~-~~~~~~~~~~-----~~~~~i~~~s~SK~~-~~~G~RiG~~~~~~~~~~~~~~~~~~~  276 (397)
T d3tata_         204 ARELIPFLDIAYQGFGAGMEE-DAYAIRAIAS-----AGLPALVSNSFSKIF-SLYGERVGGLSVMCEDAEAAGRVLGQL  276 (397)
T ss_dssp             HTTCCCEECBSCTTSSSCHHH-HHHHHHHHHT-----TTCCCEECBCCHHHH-TBTTTCCBCCEEECSSTTHHHHHHHHH
T ss_pred             hcCeeEEeehhhhhhccCCcc-cchhhhhhhh-----cCCceEEEecCcccc-cccCccccccccchhHHHHHHHHHHHH
Confidence            999999999999999996532 2222222222     233579999999999 89999999999843222222222    


Q ss_pred             HHhh-hccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CC-ceEecCCceeEEec
Q 009517          377 YKVA-SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL--EG-ITCNKAEGAMYLFP  452 (533)
Q Consensus       377 ~~~~-~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~g-~~~~~~~gg~~~~~  452 (533)
                      .... ....+++...|.++..++.++    ..+..+.++++.++++++++++.+.+.|.+.  +| |.++.+++|||+|+
T Consensus       277 ~~~~~~~~~~~~~~~q~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~  352 (397)
T d3tata_         277 KATVRRNYSSPPNFGAQVVAAVLNDE----ALKASWLAEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYT  352 (397)
T ss_dssp             HHHTTTTTSSCCSHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCTTSCTTHHHHCCSSBCCC
T ss_pred             HHHhhcccccccHHHHHHHHHhcCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEcCCCceEEec
Confidence            1122 255778888998888888653    3566777888899999999999999999886  22 77889999999996


Q ss_pred             ccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec-CCcCcHHHHHHHHHHHH
Q 009517          453 RIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-PQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~~~~l~~~l  524 (533)
                      +++                 .+++.+|++|+||++.||.           |||++ +++++|+.+.++|++++
T Consensus       353 ~ls-----------------~e~~~~L~~e~~V~l~~g~-----------Ri~~a~~~~~~i~~~~~ai~~v~  397 (397)
T d3tata_         353 GLS-----------------AAQVDRLREEFGVYLIASG-----------RMCVAGLNTANVQRVAKAFAAVM  397 (397)
T ss_dssp             CCC-----------------HHHHHHHTTTTCEECCSSS-----------CCBTTSCCTTTHHHHHHHHHHHC
T ss_pred             CcC-----------------HHHHHHHHHhCCEEeCCCC-----------EEEeccCCHHHHHHHHHHHHHhC
Confidence            543                 2346788899999999852           89996 89999999999998764

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=100.00  E-value=1.3e-48  Score=402.04  Aligned_cols=387  Identities=15%  Similarity=0.151  Sum_probs=291.4

Q ss_pred             ccccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHH
Q 009517           64 KVLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSAD  143 (533)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~  143 (533)
                      -+..+++.+..+++..+++++.+        |.+++|||++|.+....++|.                         +.+
T Consensus         5 ~~~~~~~~~~~~i~~l~~~~~~d--------~~~~~Inl~iG~~~d~~g~~~-------------------------~~~   51 (412)
T d1ajsa_           5 VFAEVPQAQPVLVFKLIADFRED--------PDPRKVNLGVGAYRTDDCQPW-------------------------VLP   51 (412)
T ss_dssp             TTTTCCCCCCCHHHHHHHHHHTC--------CCTTCEECCSCCCCCTTSCCC-------------------------CCH
T ss_pred             hhhhCCcCCCChHHHHHHHHhcC--------CCCCcEEeeCCCCcCCCCCCC-------------------------CcH
Confidence            35557777777899999999853        334589999996543222221                         233


Q ss_pred             HHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEE--EcCChHHHHHHHHHHh-------ccCC
Q 009517          144 SIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIF--LTDGASPAVHMMMQLL-------IRSE  214 (533)
Q Consensus       144 v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~--~t~G~~~al~~~~~~l-------~~~~  214 (533)
                      .++++.+.+..... ..++|+|..|.++||+++++++.+.++.++..++++  .|.|++.++..+...+       . +|
T Consensus        52 ~V~~a~~~~~~~~~-~~~~Y~p~~G~p~lreaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~p  129 (412)
T d1ajsa_          52 VVRKVEQRIANNSS-LNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTN-NK  129 (412)
T ss_dssp             HHHHHHHHHHTCTT-CCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSS-CC
T ss_pred             HHHHHHHHHHhCCC-cCCCCCCCCCCHHHHHHHHHHHhccCCcccccccceeecccchhhHHHHHHHHHHHHhhhcC-CC
Confidence            44555555544333 367899999999999999999998888777777654  4556665555554443       4 79


Q ss_pred             CCeEEEcCCcCcchHHHHHHhCCeEEEE-ecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHH
Q 009517          215 NDGILCPIPQYPLYSASIALHGGTLVPY-YLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQR  293 (533)
Q Consensus       215 gd~Vlv~~p~~~~~~~~~~~~g~~~~~v-~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~  293 (533)
                      ||+|++++|+|++|..+++.+|++++.+ +..++.++.+|++.+++.+...   .++++++++++||||||.++|+++++
T Consensus       130 Gd~Vlv~~P~y~~y~~~~~~~G~~~v~~~~~~~~~~~~~d~~~~~~~~~~~---~~~~~~il~~~P~NPTG~v~s~e~~~  206 (412)
T d1ajsa_         130 DTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENA---PEFSIFVLHACAHNPTGTDPTPEQWK  206 (412)
T ss_dssp             CSCEEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHH
T ss_pred             CCEEEEeCCcchhhHHHHHHcCCeEEEeecccccccccccHHHHHHHHHhc---cCCcEEEEecCCCCCcCCCCCHHHHH
Confidence            9999999999999999999999986654 4555567788999988887653   34788899999999999999999999


Q ss_pred             HHHHHHHHcCCEEEEccccccccccCCCCcccHHHH-HhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHH
Q 009517          294 AIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKV-SRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEV  372 (533)
Q Consensus       294 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~  372 (533)
                      +|+++|++||++||+||+|.++.|++.. ..++... ..+     ....++++.|+||.+ +++|||+||+++.....+.
T Consensus       207 ~i~~la~~~~~~ii~De~Y~~l~~~~~~-~~~~~~~~~~~-----~~~~~~~~~s~sk~~-~~~G~R~G~~~~~~~~~~~  279 (412)
T d1ajsa_         207 QIASVMKRRFLFPFFDSAYQGFASGNLE-KDAWAIRYFVS-----EGFELFCAQSFSKNF-GLYNERVGNLTVVAKEPDS  279 (412)
T ss_dssp             HHHHHHHHHTCEEEEEESCTTTTTSCHH-HHTHHHHHHHH-----TTCCEEEEEECTTTS-CCGGGCEEEEEEECSSHHH
T ss_pred             HHHHHHhhCCEEEEecHhhhhhhcCCcc-cchhhhhhhhh-----hcccccccccccccc-cCCCCCccccccchhHHHH
Confidence            9999999999999999999999997532 1121111 112     233578899999999 8999999999983222222


Q ss_pred             HHH----HHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CC-ceEecC
Q 009517          373 REQ----IYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL--EG-ITCNKA  444 (533)
Q Consensus       373 ~~~----l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~g-~~~~~~  444 (533)
                      +..    +..... ...+++.++|.++..++.+.    ..++.+.++++.++++|+++|+.+.+.|+++  ++ |.++.+
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~r~~l~~~L~~~~~~~~~~~i~~  355 (412)
T d1ajsa_         280 ILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDP----ELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITD  355 (412)
T ss_dssp             HHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHH
T ss_pred             HHHHHHHHHHHhhccccccchHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeecC
Confidence            222    222222 55778899999998888643    3456677888999999999999999999987  22 677889


Q ss_pred             CceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec-CCcCcHHHHHHHHHHH
Q 009517          445 EGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-PQEDKIPAIVTRLTDF  523 (533)
Q Consensus       445 ~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~~~~l~~~  523 (533)
                      ++|||+|++++                 .+++.++++++||+++||.           ||+++ .++++|+.++++|+++
T Consensus       356 ~~G~F~~~~ls-----------------~~~v~~L~~e~gV~~vpg~-----------Ri~~ag~~~~~i~~~a~aI~~a  407 (412)
T d1ajsa_         356 QIGMFSFTGLN-----------------PKQVEYLINQKHIYLLPSG-----------RINMCGLTTKNLDYVATSIHEA  407 (412)
T ss_dssp             CCSSEEECCCC-----------------HHHHHHHHHTTCEECCTTS-----------EEEGGGCCTTTHHHHHHHHHHH
T ss_pred             CCeEEEecCCC-----------------HHHHHHHHHhCCEEEeCCC-----------eEEeccCCHHHHHHHHHHHHHH
Confidence            99999996543                 2346788999999999852           99996 8999999999999999


Q ss_pred             HHHH
Q 009517          524 HKNF  527 (533)
Q Consensus       524 l~~~  527 (533)
                      ++++
T Consensus       408 v~~~  411 (412)
T d1ajsa_         408 VTKI  411 (412)
T ss_dssp             HHHC
T ss_pred             HHhc
Confidence            9874

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8.1e-48  Score=394.12  Aligned_cols=377  Identities=15%  Similarity=0.130  Sum_probs=278.4

Q ss_pred             cCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHH
Q 009517           67 KCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIE  146 (533)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~  146 (533)
                      .++..|.++|++.+++++++.        .+++|||++|.+.....+|+                        .++.|.+
T Consensus         4 ~~~~~p~d~i~~~~~~~~~d~--------~~~kInL~iG~~~d~~g~~p------------------------~~~~V~~   51 (396)
T d2q7wa1           4 NITAAPADPILGLADLFRADE--------RPGKINLGIGVYKDETGKTP------------------------VLTSVKK   51 (396)
T ss_dssp             TCCCCCC-------------------------CEESSCCSCCCTTSCCC------------------------CCHHHHH
T ss_pred             ccccCCCChHHHHHHHHhccC--------CCCcEEeeCCCccCCCCCCC------------------------CCHHHHH
Confidence            344556666777777776532        23489999997654222221                        1466777


Q ss_pred             HHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCE--EEcCChHHHHHHHHHH--hccCCCCeEEEcC
Q 009517          147 RAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDI--FLTDGASPAVHMMMQL--LIRSENDGILCPI  222 (533)
Q Consensus       147 ~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i--~~t~G~~~al~~~~~~--l~~~~gd~Vlv~~  222 (533)
                      +..+.+.+.   ..++|+|..|+++||+++++++.++++....++.+  ++|.|+..++.+++..  .. ++||.|++++
T Consensus        52 A~~~~~~~~---~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~gd~Vlvp~  127 (396)
T d2q7wa1          52 AEQYLLENE---TTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKN-TSVKRVWVSN  127 (396)
T ss_dssp             HHHHHHHHC---CCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHH-SCCCEEEEEE
T ss_pred             HHHHHhhCC---CCCCCCCCcCCHHHHHHHHHHHHhhcCCcccccceeeeccchHHHHHHHHHHHHhhc-ccceEEEEec
Confidence            766666552   25679999999999999999999888766666654  4566776666555543  35 7999999999


Q ss_pred             CcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHc
Q 009517          223 PQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKE  302 (533)
Q Consensus       223 p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~  302 (533)
                      |+|++|..++..+|++++.+++..+.++..+...+++.+...   .++++++++++||||||.++|.+++++|+++|++|
T Consensus       128 P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~  204 (396)
T d2q7wa1         128 PSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEA---QAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEK  204 (396)
T ss_dssp             SCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTC---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHH
T ss_pred             CCCccchHHHHHcCCeeEecccccccccccccchHHHHHHHh---ccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcC
Confidence            999999999999999999999998888888888888776543   34678888899999999999999999999999999


Q ss_pred             CCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHh---
Q 009517          303 GLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV---  379 (533)
Q Consensus       303 ~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~---  379 (533)
                      +++||+||+|.++.|++. ...+......+.     ...++++.|+||.+ +++|||+||+++   +...++.+...   
T Consensus       205 ~~~ii~De~Y~~l~~~~~-~~~~~~~~~~~~-----~~~~~~~~s~sk~~-~~~G~R~G~~~~---~~~~~~~~~~~~~~  274 (396)
T d2q7wa1         205 GWLPLFDFAYQGFARGLE-EDAEGLRAFAAM-----HKELIVASSYSKNF-GLYNERVGACTL---VAADSETVDRAFSQ  274 (396)
T ss_dssp             TCEEEEEESCTTSSSCHH-HHTHHHHHHHHH-----CSCEEEEEECTTTT-TCGGGCCEEEEE---ECSSHHHHHHHHHH
T ss_pred             CeEEEEeccccccccCCc-cCchHhhhhhhh-----cccccccccccccc-cccCCCcccccc---chhHHHHHHHhhhh
Confidence            999999999999999653 222222333332     22468889999999 899999999998   44444433322   


Q ss_pred             -----hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--C-CceEecCCceeEEe
Q 009517          380 -----ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL--E-GITCNKAEGAMYLF  451 (533)
Q Consensus       380 -----~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~-g~~~~~~~gg~~~~  451 (533)
                           .+...+++..+|.++..++.++    .....+.++++.++++++++++.+.+.|+++  + .|.++.+++|||+|
T Consensus       275 ~~~~~~~~~~~~~~~~q~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~  350 (396)
T d2q7wa1         275 MKAAIRANYSNPPAHGASVVATILSND----ALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSF  350 (396)
T ss_dssp             HHHHHHTTTSSCCHHHHHHHHHHHTSH----HHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEE
T ss_pred             hhhhhhccccCCCHHHHHHHHHHhcCc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceecCCCeEEEe
Confidence                 1245778889999998888753    3555677888999999999999999999997  1 16678899999999


Q ss_pred             cccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec-CCcCcHHHHHHHHHHHH
Q 009517          452 PRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-PQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~~~~l~~~l  524 (533)
                      ++++                 .+++.+|++++||+++||+           ||+++ +++++|++++++|++++
T Consensus       351 ~~l~-----------------~e~~~~L~~e~gV~~~~g~-----------Ri~~a~l~~~~i~~~~~ai~~v~  396 (396)
T d2q7wa1         351 SGLT-----------------KEQVLRLREEFGVYAVASG-----------RVNVAGMTPDNMAPLCEAIVAVL  396 (396)
T ss_dssp             CCCC-----------------HHHHHHHHHHHCEECCTTC-----------EEEGGGCCTTTHHHHHHHHHHHC
T ss_pred             eCCC-----------------HHHHHHHHHhCCEEECCCC-----------EEEecCCCHHHHHHHHHHHHHhC
Confidence            6543                 2347788999999999753           99997 89999999999998864

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=100.00  E-value=8.9e-47  Score=386.20  Aligned_cols=378  Identities=16%  Similarity=0.158  Sum_probs=290.4

Q ss_pred             cccCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHH
Q 009517           65 VLKCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADS  144 (533)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v  144 (533)
                      +.++++.+.++|++.+++++++        +.+++|||++|.+....++|+                        .++.|
T Consensus         2 ~~~~~~~~~d~i~~l~~~~~~d--------~~~~~InL~iG~~~d~~g~~~------------------------~~~~V   49 (394)
T d2ay1a_           2 LGNLKPQAPDKILALMGEFRAD--------PRQGKIDLGVGVYKDATGHTP------------------------IMRAV   49 (394)
T ss_dssp             GGGCCCCCCCSHHHHHHHHHHC--------CCTTCEECCCCSCCCTTSCCC------------------------CCHHH
T ss_pred             CCCCCCCCCChHHHHHHHHhCC--------CCCCCEEccCCCccCCCCCCC------------------------CCHHH
Confidence            4567888888999999999863        334589999998765333332                        14566


Q ss_pred             HHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCC-hHHHHHHHHHHhccCCCCeEEEcCC
Q 009517          145 IERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDG-ASPAVHMMMQLLIRSENDGILCPIP  223 (533)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G-~~~al~~~~~~l~~~~gd~Vlv~~p  223 (533)
                      .+++.+.+.+.   ..++|+|..|+++||+++++++.+..+.....+.+++++| +..++...+..+. ++||+|++++|
T Consensus        50 ~~A~~~~~~~~---~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~gd~V~~p~p  125 (394)
T d2ay1a_          50 HAAEQRMLETE---TTKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMA-NPDLRVFVSDP  125 (394)
T ss_dssp             HHHHHHHHHHC---CCCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHH-CTTCCEEEEES
T ss_pred             HHHHHHHhhCC---CCCCCCCCCCCHHHHHHHHHHHhccccccccccceeccCchHHHHHHHHHhhhc-CCceEEEEecc
Confidence            66666666542   2468999999999999999999887765544444444443 3444566666666 79999999999


Q ss_pred             cCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcC
Q 009517          224 QYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEG  303 (533)
Q Consensus       224 ~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~  303 (533)
                      +|++|..+++.+|.+++.+++..+.++..+.+.+++.....   .++++++++++||||||.++|.+++++|+++|++|+
T Consensus       126 ~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~  202 (394)
T d2ay1a_         126 TWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAA---KKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTG  202 (394)
T ss_dssp             CCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTC---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred             cccchHHHHHHcCCEEEEecccchhcccccchhHHHHHhhc---ccCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcce
Confidence            99999999999999999999988878888888888877653   235677777899999999999999999999999999


Q ss_pred             CEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHh----
Q 009517          304 LVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV----  379 (533)
Q Consensus       304 ~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~----  379 (533)
                      ++||+||+|.+|.|++. ...++......     .+..++++.|+||.+ +++|||+||+++   +...++...+.    
T Consensus       203 ~~ii~De~Y~~l~~~~~-~~~~~~~~~~~-----~~~~~~~~~s~sk~~-~~~G~R~G~~~~---~~~~~~~~~~~~~~~  272 (394)
T d2ay1a_         203 ALPLIDLAYQGFGDGLE-EDAAGTRLIAS-----RIPEVLIAASCSKNF-GIYRERTGCLLA---LCADAATRELAQGAM  272 (394)
T ss_dssp             CEEEEEECCTTSSSCHH-HHHHHHHHHHH-----HCSSEEEEEECTTTT-TCGGGCEEEEEE---ECSSHHHHHHHHHHH
T ss_pred             EEEEEeccchhhccccc-ccchhhhhhhh-----hcccccccccccccc-cCCcccccchhh---chhHHHHHHHhhhhh
Confidence            99999999999999653 22222222222     223478899999998 799999999998   44333333221    


Q ss_pred             ---h-hccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CC-ceEecCCceeEEec
Q 009517          380 ---A-SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL--EG-ITCNKAEGAMYLFP  452 (533)
Q Consensus       380 ---~-~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~g-~~~~~~~gg~~~~~  452 (533)
                         . ....+++...|+++...+.++    ...+.+.++++.++++++++|+.|.+.|+++  ++ |.++.|+||||+|+
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~  348 (394)
T d2ay1a_         273 AFLNRQTYSFPPFHGAKIVSTVLTTP----ELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRL  348 (394)
T ss_dssp             HHHHHTTTSSCCCHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHHHCCSSEEEC
T ss_pred             HhhhcccccchhHHHHHHHHHhcCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceeeECCCceeEEec
Confidence               1 245677888888888887653    3556677888999999999999999999886  22 77889999999996


Q ss_pred             ccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec-CCcCcHHHHHHHHHHH
Q 009517          453 RIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL-PQEDKIPAIVTRLTDF  523 (533)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~~~~l~~~  523 (533)
                      +++                 .+++++|++++||+++||           .|||++ +++++|+.+.++|.++
T Consensus       349 ~ls-----------------~~~~~~L~~~~~V~~~~g-----------~Ri~~a~l~~~~i~~l~~ai~~v  392 (394)
T d2ay1a_         349 GAT-----------------PEQVKRIKEEFGIYMVGD-----------SRINIAGLNDNTIPILARAIIEV  392 (394)
T ss_dssp             CCC-----------------HHHHHHHHHHHCEECCTT-----------CEEEGGGCCTTTHHHHHHHHHHH
T ss_pred             CcC-----------------HHHHHHHHHhCCEEecCC-----------CEEEecCCCHHHHHHHHHHHHHh
Confidence            543                 234678889999999985           299996 8999999999988875

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=1.1e-43  Score=357.97  Aligned_cols=318  Identities=18%  Similarity=0.238  Sum_probs=252.4

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      |+.+++++.+.+..     ...|++. |..+||+++|++++      +++++|++|+|+++++..++..+.   ++.+++
T Consensus        37 p~~~~~a~~~~~~~-----~~~Yp~~-~~~~Lr~aia~~~~------v~~~~I~~~~g~~~~~~~~~~~~~---~~~~~v  101 (355)
T d1lc5a_          37 PVSVKRALIDNLDC-----IERYPDA-DYFHLHQALARHHQ------VPASWILAGNGETESIFTVASGLK---PRRAMI  101 (355)
T ss_dssp             CHHHHHHHHHTGGG-----GGSCCCT-TCHHHHHHHHHHHT------SCGGGEEEESSHHHHHHHHHHHHC---CSEEEE
T ss_pred             CHHHHHHHHHHHHH-----hccCCCC-ChHHHHHHHHHHhC------CCHHHEEecccHHHHHHHHHhhhc---cccccc
Confidence            78888888877654     5679554 57899999999985      778999999999999998887663   556778


Q ss_pred             cCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHH
Q 009517          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (533)
Q Consensus       221 ~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~  300 (533)
                      ..|+|..|.......+..++.++++.+++|.++ +.+++++.+      ++++|++++||||||.+++.+++++|+++|+
T Consensus       102 ~~p~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~------~~~~v~l~nP~NPtG~~~~~e~l~~i~~~a~  174 (355)
T d1lc5a_         102 VTPGFAEYGRALAQSGCEIRRWSLREADGWQLT-DAILEALTP------DLDCLFLCTPNNPTGLLPERPLLQAIADRCK  174 (355)
T ss_dssp             EESCCTHHHHHHHHTTCEEEEEECCGGGTTCCC-TTHHHHCCT------TCCEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred             cCCccceeccccccccccceeeeeeccCCccce-eeeeecccc------ccceeeeecccCcccccchhhhhhhhhhhcc
Confidence            899999999999999999999999887777776 445555544      7999999999999999999999999999999


Q ss_pred             HcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHH-HHHHHHHh
Q 009517          301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAE-VREQIYKV  379 (533)
Q Consensus       301 ~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~-~~~~l~~~  379 (533)
                      +|++++|+||+|.+|.+.+... ..   . .     ....++|++.||||.+ |+||+|+||+++   +.+ +.+.+.+.
T Consensus       175 ~~~~~li~De~y~~~~~~~~~~-~~---~-~-----~~~~~~i~~~S~SK~~-~l~GlR~G~~i~---~~~~~~~~~~~~  240 (355)
T d1lc5a_         175 SLNINLILDEAFIDFIPHETGF-IP---A-L-----KDNPHIWVLRSLTKFY-AIPGLRLGYLVN---SDDAAMARMRRQ  240 (355)
T ss_dssp             HHTCEEEEECTTGGGSTTCCCS-GG---G-C-----TTCTTEEEEEESTTTT-TCTTTCCEEEEC---CCHHHHHHHHHH
T ss_pred             ccccccccccceeeeeeecccc-cc---c-c-----cccccceeeccccccc-ccccccccceec---cchhhhHHHHhh
Confidence            9999999999999987754321 11   1 1     1233689999999999 899999999997   655 44555443


Q ss_pred             hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHH
Q 009517          380 ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEK  459 (533)
Q Consensus       380 ~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~  459 (533)
                       ...++.+.++|.++..+|++           ..+....++.++++++++.+.|.+++|+.+ .|.+|+|+|++++.   
T Consensus       241 -~~~~~~~~~~~~~a~~~l~~-----------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~p~~~~f~~~~~~~---  304 (355)
T d1lc5a_         241 -QMPWSVNALAALAGEVALQD-----------SAWQQATWHWLREEGARFYQALCQLPLLTV-YPGRANYLLLRCER---  304 (355)
T ss_dssp             -SCTTCSCHHHHHHHHHGGGC-----------HHHHHHHHHHHHHHHHHHHHHHHTSTTEEE-CCCSSSEEEEEESC---
T ss_pred             -cCCccccccccccccccccc-----------cchhHHHHHHHHHHHHHHHHHHhhcCCcEE-CCCCCEEEEEECCC---
Confidence             34578889999999999864           244566778889999999999999978775 46778899977652   


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHH
Q 009517          460 AIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l  524 (533)
                                 ++..++ +.|.++||.++||..|+. .+.++||||++ +++++++++++|++++
T Consensus       305 -----------~~~~~~-~~L~~~gv~vr~~~~f~~-~~~~~iRis~~-~~~e~~~li~aL~~il  355 (355)
T d1lc5a_         305 -----------EDIDLQ-RRLLTQRILIRSCANYPG-LDSRYYRVAIR-SAAQNERLLAALRNVL  355 (355)
T ss_dssp             -----------TTCCHH-HHHHTTTEECEECTTSTT-CCTTEEEEECC-CHHHHHHHHHHHHHHC
T ss_pred             -----------CHHHHH-HHHHHCCcEEEeCccCCC-CCCCEEEEEeC-CHHHHHHHHHHHHHhC
Confidence                       123334 445678999999999963 44559999987 5677888888888764

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.1e-41  Score=339.68  Aligned_cols=300  Identities=19%  Similarity=0.287  Sum_probs=238.4

Q ss_pred             ccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCC-eEEEcCCcCcchHHHHHHhCCe
Q 009517          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND-GILCPIPQYPLYSASIALHGGT  238 (533)
Q Consensus       160 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd-~Vlv~~p~~~~~~~~~~~~g~~  238 (533)
                      ...|++.. ..+||+++|++++      +++++|++|+|+++++..++++++ ++|| .|+++.|+|..|...++..|.+
T Consensus        50 l~rYPd~~-~~~Lr~~ia~~~g------v~pe~I~it~Gs~eai~~~~~~~~-~pgd~~Vl~~~P~y~~~~~~~~~~g~~  121 (354)
T d1fg7a_          50 LNRYPECQ-PKAVIENYAQYAG------VKPEQVLVSRGADEGIELLIRAFC-EPGKDAILYCPPTYGMYSVSAETIGVE  121 (354)
T ss_dssp             TTSCCCSS-CHHHHHHHHHHHT------SCGGGEEEESHHHHHHHHHHHHHC-CTTTCEEEECSSSCTHHHHHHHHHTCE
T ss_pred             HhcCCCCc-HHHHHHHHHHHhC------CChHHeeeccCchHHHHHHHHHhh-ccccccccccccccccchhhhhccCce
Confidence            56797665 6899999999985      789999999999999999999998 8998 5888999999999999999999


Q ss_pred             EEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEcccccccccc
Q 009517          239 LVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYV  318 (533)
Q Consensus       239 ~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~  318 (533)
                      ++.++.++  +|++|+++++.++.       ++++|++++||||||.+++.++++.+.+.++ ++.++|+||+|.+|.+.
T Consensus       122 v~~~~~~~--~~~~d~~~l~~~~~-------~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~-~~~~~iidd~~~~f~~~  191 (354)
T d1fg7a_         122 CRTVPTLD--NWQLDLQGISDKLD-------GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQ  191 (354)
T ss_dssp             EEECCCCT--TSCCCHHHHHTSCT-------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGG
T ss_pred             eecccccc--ccccchhhhhhccc-------ccceeeccCCCccceeEeeeccccccccccc-ccccccccccchhhccc
Confidence            99888764  78999999988763       6999999999999999999999999888776 56788888888887654


Q ss_pred             CCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhccccCChHHHHHHHHHc
Q 009517          319 PEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVM  398 (533)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~~L  398 (533)
                      ...  ..   ..      ....+++++.||||.| |++|+|+||+++   ++++++.+.+... .++.+...|.++..++
T Consensus       192 ~~~--~~---~~------~~~~~~iv~~S~SK~~-~laGlRiGy~i~---~~~~i~~l~~~~~-~~~~~~~~~~~a~~~~  255 (354)
T d1fg7a_         192 ASL--AG---WL------AEYPHLAILRTLSKAF-ALAGLRCGFTLA---NEEVINLLMKVIA-PYPLSTPVADIAAQAL  255 (354)
T ss_dssp             GCS--GG---GT------TTCTTEEEEEESSSTT-CCGGGCCEEEEE---CHHHHHHHHHHSC-SSCSCHHHHHHHHHHT
T ss_pred             ccc--ch---hh------cccccceEEeCCcccc-CCCccccccccc---cchhhhhhhhhcC-ccchhhHHHHHHHHHH
Confidence            321  11   11      2234578899999999 899999999998   9999999987664 3566777777766665


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHH
Q 009517          399 SPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRR  478 (533)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (533)
                      .+         ....+.....+.+.++++.+.+.|.+++++..+.|.+++|+|++++               ++..+++ 
T Consensus       256 ~~---------~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~p~~~~f~~~~~~---------------~~~~~~~-  310 (354)
T d1fg7a_         256 SP---------QGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFK---------------ASSAVFK-  310 (354)
T ss_dssp             SH---------HHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEET---------------THHHHHH-
T ss_pred             hh---------hccccccccchhhhhHHHHHHHHHHhCCCcceeCCCCceEEEEeCC---------------CHHHHHH-
Confidence            42         1223345556678888899999999997777788899999997765               1333444 


Q ss_pred             HHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHH
Q 009517          479 LLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLT  521 (533)
Q Consensus       479 ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~  521 (533)
                      .|.++||+|++|..|...+  +|||||++ +++++++++++|+
T Consensus       311 ~L~~~gIlvr~~~~~~~~~--~~lRisig-t~ee~~~~l~aLk  350 (354)
T d1fg7a_         311 SLWDQGIILRDQNKQPSLS--GCLRITVG-TREESQRVIDALR  350 (354)
T ss_dssp             HHHHTTEECEECTTSTTCT--TEEEEECC-CHHHHHHHHHHHH
T ss_pred             HHHHCCcEEecCCCCCCCC--CEEEEEeC-CHHHHHHHHHHHh
Confidence            4567899999998885334  49999997 4456677777664

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.6e-41  Score=338.93  Aligned_cols=327  Identities=17%  Similarity=0.176  Sum_probs=249.8

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      +.+++.+++..++|         +|+|++|++.+                      +.       |+.+++++.+.+.. 
T Consensus         7 ~~~~~~~~~~~~~d---------~~~l~~~enp~----------------------~~-------p~~i~~~~~~~~~~-   47 (334)
T d2f8ja1           7 IAKRAYPYETEKRD---------KTYLALNENPF----------------------PF-------PEDLVDEVFRRLNS-   47 (334)
T ss_dssp             HHHHSCCCCCCCCC---------SEECSSCCCSS----------------------CC-------CHHHHHHHHHHCCT-
T ss_pred             HHHhcccccccCCC---------ceEEECCCCCC----------------------CC-------CHHHHHHHHHHhhc-
Confidence            44445455444445         99999997543                      32       78999998888865 


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHh
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALH  235 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~  235 (533)
                         ....|.|..|.++||+++|+++++. +  +++++|++|+|+++++.++++     +||+|++++|+|..|...++.+
T Consensus        48 ---~~~~~yp~~g~~~Lr~aia~~~~~~-~--v~~d~I~it~G~~~~l~~l~~-----~~d~v~i~~P~y~~~~~~~~~~  116 (334)
T d2f8ja1          48 ---DALRIYYDSPDEELIEKILSYLDTD-F--LSKNNVSVGNGADEIIYVMML-----MFDRSVFFPPTYSCYRIFAKAV  116 (334)
T ss_dssp             ---TGGGSCCCSSCHHHHHHHHHHHTCS-S--CCGGGEEEEEHHHHHHHHHHH-----HSSEEEECSSCCHHHHHHHHHH
T ss_pred             ---chhcCCCCCCcHHHHHHHHHHhccc-C--CCcceEEecCcchhHHHHHhh-----hccccccccccccccccchhcc
Confidence               2455557789999999999999753 3  678999999999999987654     4689999999999999999999


Q ss_pred             CCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccc
Q 009517          236 GGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQEN  315 (533)
Q Consensus       236 g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~  315 (533)
                      |++++.+|++++..+  +     +..      ..++++++++|||||||.+++.+++.+    +.++++++|+||+|.++
T Consensus       117 g~~~v~v~~~~~~~~--~-----~~~------~~~~~~l~l~nP~NPtG~~~s~~~l~~----~~~~~~~ii~Dd~~~~~  179 (334)
T d2f8ja1         117 GAKFLEVPLTKDLRI--P-----EVN------VGEGDVVFIPNPNNPTGHVFEREEIER----ILKTGAFVALDEAYYEF  179 (334)
T ss_dssp             TCCEEECCCCTTSCC--C-----CCC------CCTTEEEEEESSCTTTCCCCCHHHHHH----HHTTTCEEEEECTTGGG
T ss_pred             CCccccccccccccc--c-----ccc------cccceEEEecccccccceeecHHHhhc----cccceeEEeecccchhh
Confidence            999999999875322  1     111      127899999999999999999776655    35689999999999876


Q ss_pred             cccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhccccCChHHHHHHH
Q 009517          316 VYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILAS  395 (533)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~  395 (533)
                      .+....  ..     .     ....++|++.||||++ +++|+|+||+++   ++++++.+..... .++.+..+|.++.
T Consensus       180 ~~~~~~--~~-----~-----~~~~~~i~~~S~SK~~-~~~G~R~G~~~~---~~~~i~~l~~~~~-~~~~s~~~~~~a~  242 (334)
T d2f8ja1         180 HGESYV--DF-----L-----KKYENLAVIRTFSKAF-SLAAQRVGYVVA---SEKFIDAYNRVRL-PFNVSYVSQMFAK  242 (334)
T ss_dssp             TCCCCG--GG-----G-----GTCSSEEEEEESTTTS-SCTTTCEEEEEE---CHHHHHHHHHHSC-TTCSCHHHHHHHH
T ss_pred             cccccc--cc-----c-----ccCceEEEEecCcccc-chhhhhhhhccc---chHHHHHHHHhhc-ccccchhhhhhcc
Confidence            553321  11     1     1223689999999998 899999999998   9999999987764 4677888998888


Q ss_pred             HHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHH
Q 009517          396 LVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFY  475 (533)
Q Consensus       396 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (533)
                      +++.+           .++.+.+++.++++++.+.+.|+++ |+++++++|+ |+|+.++  ..           +...+
T Consensus       243 ~~l~~-----------~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~~~g~-f~~~~~~--~~-----------~~~~~  296 (334)
T d2f8ja1         243 VALDH-----------REIFEERTKFIVEERERMKSALREM-GYRITDSRGN-FVFVFME--KE-----------EKERL  296 (334)
T ss_dssp             HHHHT-----------HHHHHHHHHHHHHHHHHHHHHHHHH-TCEECCCCSS-EEEEECC--HH-----------HHHHH
T ss_pred             ccccc-----------ccchhhHHHHHHHHHHHHHHHHHHC-CCeECCCCce-EEEEECC--CC-----------CHHHH
Confidence            87742           3556777888999999999999999 9999999887 5775544  21           13344


Q ss_pred             HHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHH
Q 009517          476 CRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTD  522 (533)
Q Consensus       476 ~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~  522 (533)
                      + +.|.++||.++++      +  +|||||++. .+++++++++|++
T Consensus       297 ~-~~L~~~GI~vr~~------~--~~vRis~g~-~ee~~~l~~~l~~  333 (334)
T d2f8ja1         297 L-EHLRTKNVAVRSF------R--EGVRITIGK-REENDMILRELEV  333 (334)
T ss_dssp             H-HHHHHTTEECEEE------T--TEEEEECCC-HHHHHHHHHHHHH
T ss_pred             H-HHHHHCCCEECCC------C--CeEEEEcCC-HHHHHHHHHHHhc
Confidence            4 4556789999862      2  399999974 4567888887765

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=100.00  E-value=2.4e-38  Score=322.71  Aligned_cols=295  Identities=16%  Similarity=0.186  Sum_probs=224.7

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhc-------cCCCCeEEEcCCcCcchHHHHHHhCCeEEEE
Q 009517          170 KGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI-------RSENDGILCPIPQYPLYSASIALHGGTLVPY  242 (533)
Q Consensus       170 ~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-------~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v  242 (533)
                      ++|+++|+++.....+...+..+|++|+|++|++..++.+|.       ..|||+|+++.|+|+.|....+.++.+... 
T Consensus       103 ~~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~~~~~~~~~-  181 (425)
T d2hoxa1         103 FELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYV-  181 (425)
T ss_dssp             HHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEE-
T ss_pred             HHHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccccHHHHHHHcCCCCCc-
Confidence            899999999988776766666789999999999999999983       158899999999999999999998876544 


Q ss_pred             ecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCC
Q 009517          243 YLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKK  322 (533)
Q Consensus       243 ~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~  322 (533)
                             |.+|.+.+++++++      +++++++++||||||.+..          +..+++.+|.||+|.+..|.+-  
T Consensus       182 -------~~~D~~~~~~~~~~------~~~ii~l~sPnNPtG~l~~----------~v~~~~~~I~DEaY~~~~f~~~--  236 (425)
T d2hoxa1         182 -------WAGNAANYVNVSNP------EQYIEMVTSPNNPEGLLRH----------AVIKGCKSIYDMVYYWPHYTPI--  236 (425)
T ss_dssp             -------EEEEGGGGTTCSCG------GGEEEEEESSCTTTCCCCC----------CSSTTCEEEEECTTCSTTTSCC--
T ss_pred             -------cCCCHHHHHhhCCC------CceEEEEECCCCCCcchhh----------hhhhCCEEEEeccccCccccch--
Confidence                   44566777776665      7999999999999998742          2336899999999976444321  


Q ss_pred             cccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCC
Q 009517          323 FHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPP  401 (533)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~  401 (533)
                              .     ....++|++.||||+| |++|||+||+++  .++.+++.+.+... .+.+++.++|.++..+|+..
T Consensus       237 --------~-----~~~~~~Ivl~S~SK~f-glaGlRiGw~i~--~~~~i~~~~~~~~~~~~~~vs~~~Q~aa~~aL~~~  300 (425)
T d2hoxa1         237 --------K-----YKADEDILLFTMSKFT-GHSGSRFGWALI--KDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEV  300 (425)
T ss_dssp             --------C-----SCBCCSEEEEEHHHHT-SCGGGCCEEEEE--CCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHH
T ss_pred             --------h-----hhcCCeEEEEeCHHhc-cCcchheeeEEe--CCHHHHHHHHHhhccCcccCCHHHHHHHHHHhhcc
Confidence                    1     1223468999999999 899999999877  37788888888766 67899999999998887531


Q ss_pred             CCCChhHH----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCceE--------------ecCCceeEEecccCCCHHHHHH
Q 009517          402 KVGDESYE----SYCAERDGILSSLARRAKTLEDAFNSLEGITC--------------NKAEGAMYLFPRIQLPEKAIKA  463 (533)
Q Consensus       402 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~--------------~~~~gg~~~~~~~~~~~~~~~~  463 (533)
                      .   ..+.    ...+..+..++.++++++.+.+.|++.+++.+              ..+..+.|+|+++...      
T Consensus       301 ~---~~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~~------  371 (425)
T d2hoxa1         301 V---AMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWE------  371 (425)
T ss_dssp             H---HHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSG------
T ss_pred             H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeeccCCccceeeeeeccCCCcceeeeeCCCC------
Confidence            1   0000    01123456778889999999999988633322              2233344567655421      


Q ss_pred             HHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHH
Q 009517          464 AEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       464 ~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~  525 (533)
                              +..++.++|+++||.++||+.||..  .+|||||+..++|++++++++|+++++
T Consensus       372 --------~~~~~~~lL~e~gI~v~pGs~FG~~--~~yvRisl~~~~e~ld~~l~rL~~~v~  423 (425)
T d2hoxa1         372 --------EDKDCYQTFQNGRINTQNGVGFEAS--SRYVRLSLIKTQDDFDQLMYYLKDMVK  423 (425)
T ss_dssp             --------GGCSHHHHHHHTTEECEEGGGGTSC--TTEEEEECSSCHHHHHHHHHHHHHHHT
T ss_pred             --------hHHHHHHHHHhCCEEEEechhcCCC--CCEEEEEecCCHHHHHHHHHHHHHHHh
Confidence                    2223567889999999999999843  349999999999999999999999886

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.96  E-value=1e-28  Score=248.45  Aligned_cols=307  Identities=13%  Similarity=0.133  Sum_probs=209.4

Q ss_pred             CCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeE-EEc-CCcCcchHHHHHHhCCeEEE
Q 009517          164 SHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGI-LCP-IPQYPLYSASIALHGGTLVP  241 (533)
Q Consensus       164 ~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~V-lv~-~p~~~~~~~~~~~~g~~~~~  241 (533)
                      .+..+..++++..+++++.     ...+++++++|+++|+..++.++.  +++.| +++ .|+|..+...++..|++++.
T Consensus        47 ~~~~~~~~l~~~~~~~~~~-----~~~e~~~~~~~~~~a~~~~l~al~--~~~~vi~~~~~~~~~~~~~~~~l~g~~~v~  119 (366)
T d2aeua1          47 GSSYFAEKVNEYGLKHLGG-----DENDKCVGFNRTSSAILATILALK--PKKVIHYLPELPGHPSIERSCKIVNAKYFE  119 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHTC-----CTTEEEEEESSHHHHHHHHHHHHC--CSEEEEECSSSSCCTHHHHHHHHTTCEEEE
T ss_pred             CchhhHHHHHHHHHHHccC-----CCccEEEEeCCHHHHHHHHHHHhC--CCCEEEEecCCCcchhHHHHHHhcCCeEEC
Confidence            3445677888888888753     345789999999999999999875  56555 444 58999999999999998643


Q ss_pred             EecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCC
Q 009517          242 YYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEK  321 (533)
Q Consensus       242 v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~  321 (533)
                      .  +       |+++++++|++      ++++|++++|+||+  +++.+++++|+++|++||+++|+||+|..+.|....
T Consensus       120 ~--~-------d~e~l~~~i~~------~tk~i~~~~p~n~~--~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~  182 (366)
T d2aeua1         120 S--D-------KVGEILNKIDK------DTLVIITGSTMDLK--VIELENFKKVINTAKNKEAIVFVDDASGARVRLLFN  182 (366)
T ss_dssp             E--S-------CHHHHHTTCCT------TEEEEEECBCTTSC--BCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTT
T ss_pred             C--C-------CHHHHHHhcCC------CceEEEEEecCCCC--cCCHHHHHHHHHHhccCcEEEEEecCcccccccccc
Confidence            2  2       79999999987      89999999999986  467788999999999999999999999887764321


Q ss_pred             CcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCC
Q 009517          322 KFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSP  400 (533)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~  400 (533)
                       ......    +   ..+   +++.|+||++   +|||+||+++   ++++++.+..... .+++.+++.|+++...|+.
T Consensus       183 -~~~~~~----~---~~d---i~~~S~sK~~---~g~~~G~i~~---~~~~i~~~~~~~~~~g~~~~~~~~~a~~~aL~t  245 (366)
T d2aeua1         183 -QPPALK----L---GAD---LVVTSTDKLM---EGPRGGLLAG---KKELVDKIYIEGTKFGLEAQPPLLAGIYRALKN  245 (366)
T ss_dssp             -CCCHHH----H---TCS---EEEEETTSSS---SSCSCEEEEE---EHHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHH
T ss_pred             -CCCHhh----c---Cce---EEEecccccc---cccceeEEEe---cHHHHHHHHHHHhcccccCCHHHHHHHHHHHHh
Confidence             122112    1   234   7789999977   3999999998   9999999988775 6677888888888777642


Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--eEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHH
Q 009517          401 PKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGI--TCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRR  478 (533)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~--~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (533)
                      ..     ..+..++.+..++......+.+...+...++.  ....+.+++|+|.+....... .      ..++..++.+
T Consensus       246 l~-----~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~a~~  313 (366)
T d2aeua1         246 FN-----LERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDTI-N------IKKLIEIGFN  313 (366)
T ss_dssp             CC-----HHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEESSHHH-H------HHHHHHHHHH
T ss_pred             cc-----HHHHHHHHHHHHHHHHHHHhhhhccccccccccCcccccCccchhccCCCcceee-c------ccCHHHHHHH
Confidence            11     00111111111111111222333333333332  334556777777654322110 0      1135567889


Q ss_pred             HHHccceEEEcCCCCCCCCCCceEEEEecC-CcC--cHHHHHHHHHHHHH
Q 009517          479 LLNATGIVLVPGSGFGQVPGTWHFRCTILP-QED--KIPAIVTRLTDFHK  525 (533)
Q Consensus       479 ll~~~gV~v~pg~~f~~~~g~~~iRis~~~-~~e--~i~~~~~~l~~~l~  525 (533)
                      +++++||.+.||..|.  .+.+++|||++. +.+  +.++++++|.+.++
T Consensus       314 Ll~~~gV~~ip~~~~p--~~~~~lRis~~~~~~~~i~~d~l~~ai~~~lK  361 (366)
T d2aeua1         314 LLKNYGIITITVAGMP--GASKSLRIDLTSRDAERIDDNYIIKAIVESIK  361 (366)
T ss_dssp             HHHHHCEECSTTSSSC--SSCCSEEEETTSGGGGGSCHHHHHHHHHHHHH
T ss_pred             HHHhCCEEEEECCCCC--CCCCEEEEeccccchhhCCHHHHHHHHHHHHH
Confidence            9999999999998884  345599999973 222  34555565555444

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.94  E-value=1.1e-25  Score=225.83  Aligned_cols=302  Identities=13%  Similarity=0.142  Sum_probs=200.9

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCC
Q 009517          170 KGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATG  249 (533)
Q Consensus       170 ~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~  249 (533)
                      ..+++.+|++++        .|++++|+|+++|+..++.+++ ++||+|+++.++|......++..|++++.+|.++..+
T Consensus        50 ~~~~~~~A~~~g--------~e~~~~t~g~t~a~~~~~~al~-~~gd~Vi~~~~~h~s~~~~~~~~g~~v~~v~~~~~~~  120 (364)
T d2e7ja1          50 DFIHNQLPKFLG--------CDVARVTNGAREAKFAVMHSLA-KKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPD  120 (364)
T ss_dssp             HHHHTHHHHHTT--------SSEEEEESSHHHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTTT
T ss_pred             HHHHHHHHHHhC--------cCEEEEECcHHHHHHHHHHHHh-CCCcEEEeecccccccchHHHhccceEEEeeeccccc
Confidence            446777777753        5789999999999999999998 8999999999999988888999999999999988778


Q ss_pred             CCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHH
Q 009517          250 WGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKV  329 (533)
Q Consensus       250 ~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~  329 (533)
                      +.+|++++++++++..+. .++++|++++|+||||.+.+   +++|+++|++||+++|+|++|....+    + .+...+
T Consensus       121 ~~i~~~~l~~~i~~~~k~-~~~~lv~i~~~~n~tG~~~~---l~~I~~ia~~~~i~livD~a~~~g~~----~-~~~~~~  191 (364)
T d2e7ja1         121 YAITPENFAQTIEETKKR-GEVVLALITYPDGNYGNLPD---VKKIAKVCSEYDVPLLVNGAYAIGRM----P-VSLKEI  191 (364)
T ss_dssp             CCCCHHHHHHHHHHHTTT-SCEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTTBTTB----C-CCHHHH
T ss_pred             cccCHHHHHhhhhhhccc-CCceEEEeecCCCCCceeec---chhheeccccccchhhccccchhhhh----h-hccccc
Confidence            899999999999875332 25678899999999999998   88999999999999999999974322    1 222222


Q ss_pred             HhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhhc---------cccCChHHHHHHHHHcCC
Q 009517          330 SRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVASV---------NLCSNISGQILASLVMSP  400 (533)
Q Consensus       330 ~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~~---------~~~~~~~~q~a~~~~L~~  400 (533)
                             ..|   +++.|++|++ |.+| ++||+++   ++++++.+.+....         ..........++.+.+. 
T Consensus       192 -------g~D---~~~~S~~K~~-~~~g-~~g~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-  255 (364)
T d2e7ja1         192 -------GAD---FIVGSGHKSM-AASG-PIGVMGM---KEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFP-  255 (364)
T ss_dssp             -------TCS---EEEEEHHHHS-SCCS-SCEEEEE---CTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHH-
T ss_pred             -------ccc---eeeecccccc-CCCC-CEEEEEE---CHHHHHHHHhhccccCcccccccccccchhHHHHHHHHHH-
Confidence                   234   6788999998 6566 7999998   77766554322110         01112222233333221 


Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEec--CCceeEEecccCCCHHHHHHHHhcCCCChHHHHHH
Q 009517          401 PKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNK--AEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRR  478 (533)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~--~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (533)
                               ...+.++...+.+ +++.++.+.|.++ |+....  +......+...+  . ..+-....  .....+...
T Consensus       256 ---------~~~~~~~~~~~~~-~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~--~~~~~~~~~  319 (364)
T d2e7ja1         256 ---------HVRERIKRWDEEV-EKARRFAAEMEKL-GIKQLGDNPHNHDLMFFHAE--V-LYEISKKA--KGGRFFLYR  319 (364)
T ss_dssp             ---------HHHHHGGGHHHHH-HHHHHHHHHHHHT-TCEEESSSSCCSSEEEEECH--H-HHHHHHHS--SSGGGHHHH
T ss_pred             ---------HHHHHHHHHHHHH-HHHHHHHHHHHHc-CCeecCCCCCCcceEEEecc--c-hHHHHHHh--hccchHHHH
Confidence                     1122223333333 4555778888887 666543  222222222121  1 11111111  112223345


Q ss_pred             HHHccceEEEcCCCCCCCCCCceEEEEe-cCCcCcHHHHHHHHHHHHHHH
Q 009517          479 LLNATGIVLVPGSGFGQVPGTWHFRCTI-LPQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       479 ll~~~gV~v~pg~~f~~~~g~~~iRis~-~~~~e~i~~~~~~l~~~l~~~  527 (533)
                      .+.+.++....   .+   ....+|++. +.++++|++++++|+++++++
T Consensus       320 ~l~~~~~~~~~---~g---~~~~~~~~~~~~t~edid~~~~~l~ei~~~y  363 (364)
T d2e7ja1         320 ELKSRKIHGIK---PG---LTRYFKLSTYGLSDEEVDYVLNAFKEIIEKY  363 (364)
T ss_dssp             HHHHTTEECSC---TT---CCSEEEEECTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHhcCCceec---CC---CcceEEEeccCCCHHHHHHHHHHHHHHHHHh
Confidence            56667775331   12   112667775 588899999999999888764

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=99.93  E-value=4.3e-25  Score=223.26  Aligned_cols=320  Identities=18%  Similarity=0.198  Sum_probs=208.6

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcc----cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCC
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQG----IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND  216 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G----~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd  216 (533)
                      |..|++++.+.+..........|.....    +.++|+.+|++++      +++++|++|+|+++++..++..+..++||
T Consensus        20 p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~------~~~~~i~~~~g~t~a~~~~~~~l~~~~g~   93 (381)
T d1elua_          20 PTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFN------VDPNTITITDNVTTGCDIVLWGLDWHQGD   93 (381)
T ss_dssp             CHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTT------SCGGGEEEESSHHHHHHHHHHHSCCCTTC
T ss_pred             CHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHhC------CCcccEEEECChHHHhhhcchhhhhcCCc
Confidence            7788888877665321101112222111    3346666666654      67889999999999999999998547899


Q ss_pred             eEEEcCCcCcchHH----HHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHH
Q 009517          217 GILCPIPQYPLYSA----SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQ  292 (533)
Q Consensus       217 ~Vlv~~p~~~~~~~----~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l  292 (533)
                      +|+++++.|+....    ..+..|+++..+|.+.......+.+.+++++++      +++++++++++||||.+++   +
T Consensus        94 ~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~i~~------~t~~v~i~~~~n~tG~~~~---~  164 (381)
T d1elua_          94 EILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGP------KTRLVILSHLLWNTGQVLP---L  164 (381)
T ss_dssp             EEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCT------TEEEEEEESBCTTTCCBCC---H
T ss_pred             eEEEeccccceeeeccccccccccccccccccccccccchHHHHHHhhhcc------cccccccccccccccccch---h
Confidence            99999999986444    445579999999987543333335666666655      8999999999999999999   7


Q ss_pred             HHHHHHHHHc----CCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecC
Q 009517          293 RAIVDFCKKE----GLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGF  368 (533)
Q Consensus       293 ~~i~~l~~~~----~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~  368 (533)
                      ++|.++|+++    ++++++|.++.....    + ..+    .++   ..|   +++.|+.|.+.+..  ++|++.+   
T Consensus       165 ~~I~~l~~~~~~~~~~~~~vD~~~~~g~~----~-~~~----~~~---~~D---~~~~s~~K~~~~p~--G~g~l~~---  224 (381)
T d1elua_         165 AEIMAVCRRHQGNYPVRVLVDGAQSAGSL----P-LDF----SRL---EVD---YYAFTGHKWFAGPA--GVGGLYI---  224 (381)
T ss_dssp             HHHHHHHHHCCSSSCCEEEEECTTTBTTB----C-CCT----TTS---CCS---EEEEESSSTTCCCT--TCEEEEE---
T ss_pred             hHHHHHHhhcccccccccccccccccccc----c-ccc----ccc---ccc---cccccccccccccc--hhhHHHh---
Confidence            7888888885    689999999874221    1 111    111   234   77889999985433  4566665   


Q ss_pred             CHHHHHHHHHhh----------------------h-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 009517          369 SAEVREQIYKVA----------------------S-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR  425 (533)
Q Consensus       369 ~~~~~~~l~~~~----------------------~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (533)
                      .++..+.+....                      . ...+++.....++.++++.       . ......+...++.+++
T Consensus       225 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~-------~-~~~g~~~~~~~~~~~~  296 (381)
T d1elua_         225 HGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQL-------H-QRQGTAEERYQAICQR  296 (381)
T ss_dssp             CTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHH-------H-HHHCCHHHHHHHHHHH
T ss_pred             hHHHHHhcCcccccccccccccccccccccccccccccccccchhhhhhhhhhhh-------H-HHhcccccchhhhhhH
Confidence            665554432110                      0 1123444444444444420       0 0111123445677788


Q ss_pred             HHHHHHHHhcCCCceEec---CCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceE
Q 009517          426 AKTLEDAFNSLEGITCNK---AEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHF  502 (533)
Q Consensus       426 ~~~l~~~L~~~~g~~~~~---~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~i  502 (533)
                      ++++.+.|++++|++++.   +.++++.| .+..+            ...+. +.+.|+++||.++.   ++   +.+++
T Consensus       297 ~~~l~~~L~~~~~~~~~~~~~~~~~~vsf-~~~~~------------~~~~~-i~~~L~~~gi~v~~---~~---~~~~l  356 (381)
T d1elua_         297 SEFLWRGLNQLPHVHCLATSAPQAGLVSF-TVDSP------------LGHRA-IVQKLEEQRIYLRT---IA---DPDCI  356 (381)
T ss_dssp             HHHHHHHHHHSTTEEESCSSCCSSSEEEE-EECSS------------SCHHH-HHHHHHHTTEECEE---ET---TTTEE
T ss_pred             HHHHHHHHhcCCCeEecCCCCccccEEEE-EcCCC------------CCHHH-HHHHHHhCCcEEEe---cC---CCCEE
Confidence            899999999999988864   45665544 23311            12233 34677889999864   22   23389


Q ss_pred             EEEec--CCcCcHHHHHHHHHHH
Q 009517          503 RCTIL--PQEDKIPAIVTRLTDF  523 (533)
Q Consensus       503 Ris~~--~~~e~i~~~~~~l~~~  523 (533)
                      |||+.  +++++|++++++|+++
T Consensus       357 Ris~~~~nt~edid~ll~~l~e~  379 (381)
T d1elua_         357 RACCHYITDEEEINHLLARLADF  379 (381)
T ss_dssp             EEECCTTCCHHHHHHHHHHHTTC
T ss_pred             EEecCCCCCHHHHHHHHHHHHhh
Confidence            99996  6889999999998763

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=5.9e-23  Score=207.87  Aligned_cols=329  Identities=15%  Similarity=0.124  Sum_probs=231.8

Q ss_pred             CHHHHHHHHHHHhcCCCC---CccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCe
Q 009517          141 SADSIERAWQILDQIPGR---ATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDG  217 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~---~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~  217 (533)
                      +|++++++.+++.+....   ....++...-..+|.+.+|++++        .+.+++++++.+|...++..+. .++|.
T Consensus        61 hp~v~~a~~~a~~~~g~~~~~sr~~~g~~~~~~~lE~~lA~~~g--------~e~al~~~SG~~An~~~i~~l~-~~~d~  131 (401)
T d1fc4a_          61 HPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLG--------MEDAILYSSCFDANGGLFETLL-GAEDA  131 (401)
T ss_dssp             CHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHT--------CSEEEEESCHHHHHHTTHHHHC-CTTCE
T ss_pred             CHHHHHHHHHHHHHhCCCcccceeeccCcHHHHHHHHHHHHhhc--------CCceEEecchhhhhHHHHHHhc-CCCcE
Confidence            689999999988764220   00111122335578888888864        5789999999999999999998 78999


Q ss_pred             EEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHH
Q 009517          218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD  297 (533)
Q Consensus       218 Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~  297 (533)
                      |+.....|..+...+...++++..++.       .|.+++++.++..+..+....+|++....+..|.+.+   +++|.+
T Consensus       132 i~~d~~~h~s~~~G~~~~~a~~~~~~~-------~d~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~---L~~l~~  201 (401)
T d1fc4a_         132 IISDALNHASIIDGVRLCKAKRYRYAN-------NDMQELEARLKEAREAGARHVLIATDGVFSMDGVIAN---LKGVCD  201 (401)
T ss_dssp             EEEETTCCHHHHHHHHTSCSEEEEECT-------TCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC---HHHHHH
T ss_pred             EEeCCcchHHHHccccccCceEEEEcC-------CChHHHHHHHHHhhhcccCceEEEEcCCCCCCCchhh---hhHHHH
Confidence            999999999999888988998887763       3788888888777665656677777777777888877   999999


Q ss_pred             HHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHH
Q 009517          298 FCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY  377 (533)
Q Consensus       298 l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~  377 (533)
                      +|++||+++|+||+++.+.++....  ...... .+   .++ ..|++.||+|.+ |  |...|++.+   ++++++.+.
T Consensus       202 L~~~~~a~LivDeah~~g~~g~~G~--G~~~~~-~~---~~~-~dii~~tl~Ka~-g--g~~Gg~v~g---~~~~~~~l~  268 (401)
T d1fc4a_         202 LADKYDALVMVDDSHAVGFVGENGR--GSHEYC-DV---MGR-VDIITGTLGKAL-G--GASGGYTAA---RKEVVEWLR  268 (401)
T ss_dssp             HHHHTTEEEEEECTTTTTTSSTTSC--CHHHHT-TC---TTC-CSEEEEESSSTT-C--SSSCEEEEE---CHHHHHHHH
T ss_pred             HHhhcCcEEEehhhhccccccCCCC--ccchhc-cC---CCC-CeEEEeeccccc-c--cCCcccccC---CHHHHHHHH
Confidence            9999999999999999988854211  111211 11   122 237799999988 3  777799988   999999887


Q ss_pred             Hhhh---ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEeccc
Q 009517          378 KVAS---VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRI  454 (533)
Q Consensus       378 ~~~~---~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~  454 (533)
                      ....   .+...++....++...++           .....+++++++.++.+++++.+.+. |+.+...+..+... .+
T Consensus       269 ~~~~~~~~s~~l~p~~~~aa~~~l~-----------~~~~~~~~~~~l~~~~~~~~~~l~~~-g~~~~~~~~pIv~v-~~  335 (401)
T d1fc4a_         269 QRSRPYLFSNSLAPAIVAASIKVLE-----------MVEAGSELRDRLWANARQFREQMSAA-GFTLAGADHAIIPV-ML  335 (401)
T ss_dssp             HHCHHHHHSCCCCHHHHHHHHHHHH-----------HHHTCHHHHHHHHHHHHHHHHHHHHT-TCCBCCSSSSEEEE-EE
T ss_pred             cCChhhhhcCCCCHHHHHHHHhhhc-----------ccccCHHHHHHHHHHHHHHHhhhccc-CCccCCCCCCEEEE-EE
Confidence            5432   223334444444444442           22333567788888889999999887 77666555544321 12


Q ss_pred             CCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 009517          455 QLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~~  527 (533)
                      ..+..            ...+. +.|.++||++.+-.....+.+...+||++.  +|+|+|++++++|+++.+++
T Consensus       336 ~~~~~------------a~~~~-~~L~~~Gi~v~~i~~PtVp~g~~~lRi~~~a~hT~edId~~v~al~ev~~~l  397 (401)
T d1fc4a_         336 GDAVV------------AQKFA-RELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQL  397 (401)
T ss_dssp             ECHHH------------HHHHH-HHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHH------------HHHHH-HHHHHCCceEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence            21111            22334 445678999887433333456667999994  89999999999999998764

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=2.1e-23  Score=211.49  Aligned_cols=319  Identities=15%  Similarity=0.164  Sum_probs=208.8

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccC-CCc-----------ccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHH
Q 009517          141 SADSIERAWQILDQIPGRATGAYS-HSQ-----------GIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQ  208 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~-~~~-----------G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~  208 (533)
                      ++.|++++.+.+.+.     ..|+ |..           -+.++|+.+|++++      .++++|++|+|+++++..++.
T Consensus        15 ~~~v~ea~~~~~~~~-----~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg------~~~~~I~~~~~~t~~l~~~~~   83 (391)
T d1p3wa_          15 DPRVAEKMMQFMTMD-----GTFGNPASRSHRFGWQAEEAVDIARNQIADLVG------ADPREIVFTSGATESDNLAIK   83 (391)
T ss_dssp             CHHHHHHHHTTTSTT-----SCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHT------CCGGGEEEESSHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhc-----cccCCCchhhhHHHHHHHHHHHHHHHHHHHHcC------CCCCcEEEECCHHHHHHHHHh
Confidence            789999988877642     2222 211           13467888888876      678999999999999998887


Q ss_pred             Hhc---cCCCCeEEEcCCcCcchHHHHH---HhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCC
Q 009517          209 LLI---RSENDGILCPIPQYPLYSASIA---LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNP  282 (533)
Q Consensus       209 ~l~---~~~gd~Vlv~~p~~~~~~~~~~---~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NP  282 (533)
                      .+.   .++||+|++.++.|+.+...++   ..|+++..++.+.  ++.+|++.+++++++      +|++|++++++||
T Consensus        84 ~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~~~~~i~~------~T~lv~is~~~n~  155 (391)
T d1p3wa_          84 GAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQR--NGIIDLKELEAAMRD------DTILVSIMHVNNE  155 (391)
T ss_dssp             HHHHHHGGGCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCT--TSCCCHHHHHHHCCT------TEEEEECCSBCTT
T ss_pred             hhhhhhcCCCCEEEEeccccchHHHHHHHHHHcCCEEEEeCCCC--CCeEcHHHHHHhCCC------CcEEEEEECCCCC
Confidence            653   1589999999999998766554   4599999999875  347899999999987      8999999999999


Q ss_pred             CccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEE
Q 009517          283 TGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGY  362 (533)
Q Consensus       283 tG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~  362 (533)
                      ||.+++   +++|+++|+++|+++++|.+|......     .++    ..+   ..|   +++.|..|.+ |.+|.  |+
T Consensus       156 tG~~~~---~~~I~~~~~~~~~~~ivD~~~~~g~~~-----~d~----~~~---~~D---~~~~s~~k~~-g~~g~--g~  214 (391)
T d1p3wa_         156 IGVVQD---IAAIGEMCRARGIIYHVDATQSVGKLP-----IDL----SQL---KVD---LMSFSGHKIY-GPKGI--GA  214 (391)
T ss_dssp             TCCBCC---HHHHHHHHHHHTCEEEEECTTTBTTBC-----CCT----TTS---CCS---EEEEESTTTT-SCSSC--EE
T ss_pred             CeeECC---HHHHHHHhccCCcEEEEeeccccCCcc-----ccc----hhc---ccc---cccccccccc-CCCce--EE
Confidence            999999   889999999999999999999753221     111    111   234   6678999987 76665  66


Q ss_pred             EEEecCCHHHHHHHHHhh-------h-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009517          363 MEVTGFSAEVREQIYKVA-------S-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFN  434 (533)
Q Consensus       363 v~~~~~~~~~~~~l~~~~-------~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  434 (533)
                      +.+   .++....+....       . .....+.....++...+          ....+......+++++.++.+.+.|.
T Consensus       215 ~~~---~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~l~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~L~  281 (391)
T d1p3wa_         215 LYV---RRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAY----------RIAKEEMATEMERLRGLRNRLWNGIK  281 (391)
T ss_dssp             EEE---CBTTBCCCCCSSCSSCTTTTTSCSCCCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             EEE---ecchhcccCCcccCCccccCcccCcchhhhhhhhhhhh----------hHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            555   444332222111       0 11222333333322222          12223334445667777888888888


Q ss_pred             cCCCceEec--CCc--eeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCC-------------
Q 009517          435 SLEGITCNK--AEG--AMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVP-------------  497 (533)
Q Consensus       435 ~~~g~~~~~--~~g--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~-------------  497 (533)
                      ++++..+..  +..  ..+.+ .++.             .....+. ..|  +++.++.|..+....             
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~-~~~~-------------~~~~~~~-~~l--~~i~v~~G~~c~~~~~~~~~~l~~~g~~  344 (391)
T d1p3wa_         282 DIEEVYLNGDLEHGAPNILNV-SFNY-------------VEGESLI-MAL--KDLAVSSGSACTSASLEPSYVLRALGLN  344 (391)
T ss_dssp             TSTTEEECSCTTTSCTTEEEE-EETT-------------SCHHHHH-HHT--TTEECBCCCC------CCCHHHHHHTCC
T ss_pred             hhcCeeecccccccCceEEEE-EeCC-------------CChHHHH-HHh--CCCEEEccccccCCccchhHHHHHcCCC
Confidence            875544322  111  11111 1121             1123322 333  467777776542110             


Q ss_pred             ---CCceEEEEec--CCcCcHHHHHHHHHHHHHHHHH
Q 009517          498 ---GTWHFRCTIL--PQEDKIPAIVTRLTDFHKNFMD  529 (533)
Q Consensus       498 ---g~~~iRis~~--~~~e~i~~~~~~l~~~l~~~~~  529 (533)
                         ..+.||||+.  +|++||+.+++.|+++++++++
T Consensus       345 ~~~~~g~iRiS~~~~nt~edid~l~~~l~~~l~~lr~  381 (391)
T d1p3wa_         345 DELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRD  381 (391)
T ss_dssp             HHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence               1237999997  6889999999999999998764

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.9e-24  Score=217.61  Aligned_cols=356  Identities=11%  Similarity=0.059  Sum_probs=240.2

Q ss_pred             ccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHH
Q 009517           69 EYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERA  148 (533)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~  148 (533)
                      .+.|.+..+.++++...++.||++      +||+..|....                      ..+++    ++++++++
T Consensus        19 ~~~p~P~~i~~~~G~~l~D~dG~~------ylD~~~g~~~~----------------------~lGh~----~p~i~~Av   66 (404)
T d2byla1          19 NAHPLPVALERGKGIYLWDVEGRK------YFDFLSSISAV----------------------NQGHC----HPKIVNAL   66 (404)
T ss_dssp             CCCCEEEEEEEEEBTEEEETTCCE------EEESSHHHHTC----------------------TTCBT----CHHHHHHH
T ss_pred             CCCCCCceEEEeecCEEEECCCCE------EEEecCCHHHH----------------------hhcCC----CHHHHHHH
Confidence            445555567778887777778877      78876654322                      11222    68999999


Q ss_pred             HHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc--------C-CCCeEE
Q 009517          149 WQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR--------S-ENDGIL  219 (533)
Q Consensus       149 ~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--------~-~gd~Vl  219 (533)
                      .+++.+...  ...+....-..++.+.+++..        ..+.+++++++++|++.+++..+.        . ...+|+
T Consensus        67 ~~q~~~~~~--~~~~~~~~~~~~~~~~~~~~~--------~~~~v~~~~sGseA~e~Aik~ar~~~~~~~~~~~~~~~i~  136 (404)
T d2byla1          67 KSQVDKLTL--TSRAFYNNVLGEYEEYITKLF--------NYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIV  136 (404)
T ss_dssp             HHHHTTCCC--CCTTEEESSHHHHHHHHHHHH--------TCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEE
T ss_pred             HHHHhhCCC--cccccccchHHHHHHhhhhcc--------cccccccccCccccchhHHHHHHHHhhhcccccccccccc
Confidence            999987432  111111221334444444442        357899999999999999998741        1 235688


Q ss_pred             EcCCcCcchHHHHHHhCC-------------eEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCc-c
Q 009517          220 CPIPQYPLYSASIALHGG-------------TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTG-Q  285 (533)
Q Consensus       220 v~~p~~~~~~~~~~~~g~-------------~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG-~  285 (533)
                      ...-+|++..........             .+..+|.       -|++++++.+...     ++.+|+++..+...| .
T Consensus       137 ~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~-------~d~~~l~~~l~~~-----~iAaviiEPi~g~~G~~  204 (404)
T d2byla1         137 FAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY-------NDLPALERALQDP-----NVAAFMVEPIQGEAGVV  204 (404)
T ss_dssp             EETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECT-------TCHHHHHHHHTST-----TEEEEEECSSBTTTTSB
T ss_pred             ccCCCccccccceeccCCCcccccCCCCCCCCeeEecc-------cCHHHHHHhcCCC-----CeEEEEECCccCCCCCc
Confidence            788888875443332221             1223332       2789999988653     788888776566567 4


Q ss_pred             CCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCC-CeeEEEE
Q 009517          286 VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYME  364 (533)
Q Consensus       286 ~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G-~riG~v~  364 (533)
                      .++++.|++|.++|++||+++|+||++++|...|.  +..+.     ..++.||     +.+|+|.++  .| +++|.++
T Consensus       205 ~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~--~~a~~-----~~gv~PD-----i~~~gK~l~--gG~~p~~av~  270 (404)
T d2byla1         205 VPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGR--WLAVD-----YENVRPD-----IVLLGKALS--GGLYPVSAVL  270 (404)
T ss_dssp             CCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSGGG-----GGTCCCS-----EEEECGGGG--TTSSCCEEEE
T ss_pred             cCCHHHHHHHHHHHHhcCeEEEeeccccccccccc--cchhh-----hcCCCCC-----EEEECchhh--CCCccceeee
Confidence            67788899999999999999999999999866554  33322     2223688     558999994  36 8999999


Q ss_pred             EecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCceE
Q 009517          365 VTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL--EGITC  441 (533)
Q Consensus       365 ~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~g~~~  441 (533)
                      +   ++++++.+..... .|++.++++++++.+.|+           .+++ +.+.++.+++.+++.+.|+++  +.+.-
T Consensus       271 ~---~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~-----------~i~~-~~l~~~~~~~g~~l~~~l~~l~~~~i~~  335 (404)
T d2byla1         271 C---DDDIMLTIKPGEHFSTYGGNPLGCRVAIAALE-----------VLEE-ENLAENADKLGIILRNELMKLPSDVVTA  335 (404)
T ss_dssp             E---CHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHH-----------HHHH-TTHHHHHHHHHHHHHHHHHTSCTTTEEE
T ss_pred             e---chhhhhccCCCCCCcCCCcCHHHHHHHHHHHH-----------HHHh-cCchhhhhHhhHHHHHHHHhhcccccee
Confidence            8   8998877765543 778999999999999884           2221 445666777788888888886  33555


Q ss_pred             ecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHH
Q 009517          442 NKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTR  519 (533)
Q Consensus       442 ~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~  519 (533)
                      ++..|.|..+ .+..+..          .....++.+ +.++||++.|.       +.+.+|+++.  +++++|++++++
T Consensus       336 vRg~Gl~~~i-~~~~~~~----------~~~~~~~~~-l~~~Gvl~~~~-------~~~~i~l~PpL~it~~~id~~~~~  396 (404)
T d2byla1         336 VRGKGLLNAI-VIKETKD----------WDAWKVCLR-LRDNGLLAKPT-------HGDIIRFAPPLVIKEDELRESIEI  396 (404)
T ss_dssp             EEEETTEEEE-EECCCSS----------CCHHHHHHH-HHHTTEECEEE-------ETTEEEECCCTTCCHHHHHHHHHH
T ss_pred             eeecccEEEE-EEecCCc----------hhHHHHHHH-HHhCCeEEecC-------CCCEEEEECCcCCCHHHHHHHHHH
Confidence            6666766443 2322211          123334444 45689999862       2237999974  799999999999


Q ss_pred             HHHHHHH
Q 009517          520 LTDFHKN  526 (533)
Q Consensus       520 l~~~l~~  526 (533)
                      |++++++
T Consensus       397 l~~al~~  403 (404)
T d2byla1         397 INKTILS  403 (404)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHc
Confidence            9999875

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=1.6e-24  Score=221.59  Aligned_cols=373  Identities=12%  Similarity=0.038  Sum_probs=233.0

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      ++.++++...++.||++      +||+..|....                      ..+++    ++++++++.+++.+.
T Consensus        25 ~~~~~~G~~l~D~dG~~------ylD~~~g~~~~----------------------~lGh~----~p~i~~ai~~q~~~~   72 (425)
T d1sffa_          25 FADRAENCRVWDVEGRE------YLDFAGGIAVL----------------------NTGHL----HPKVVAAVEAQLKKL   72 (425)
T ss_dssp             EEEEEEBTEEEETTCCE------EEESSHHHHTC----------------------TTCBT----CHHHHHHHHHHTTTC
T ss_pred             eEEEEecCEEEeCCCCE------EEEcCcCHHhh----------------------cccCC----cHHHHHHHHHHHhhc
Confidence            55677777777777777      88887663221                      11222    699999999999873


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCC-CeEEEcCCcCcchHHHHHH
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN-DGILCPIPQYPLYSASIAL  234 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vlv~~p~~~~~~~~~~~  234 (533)
                      ..     ........+....+|+.+.+.... -..+.++++++|++|++.+++..+...| .+|+....+|++.......
T Consensus        73 ~~-----~~~~~~~~~~~~~la~~l~~~~p~-~~~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~  146 (425)
T d1sffa_          73 SH-----TCFQVLAYEPYLELCEIMNQKVPG-DFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLA  146 (425)
T ss_dssp             SC-----CCTTTEECHHHHHHHHHHHHHSSC-SSCEEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHH
T ss_pred             CC-----cccccccCcHHHHHHHHHHhhhhh-cccceeeeeccccchhhhHHHHhhhhhcccceEeecCCCcCccccchh
Confidence            21     111111234445566666654321 1135799999999999999998863233 6799999999987665544


Q ss_pred             h-CC-------------eEEEEec--CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCcc-CCCHHHHHHHHH
Q 009517          235 H-GG-------------TLVPYYL--DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ-VLAEENQRAIVD  297 (533)
Q Consensus       235 ~-g~-------------~~~~v~~--~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~-~~s~~~l~~i~~  297 (533)
                      . |.             .....+.  .....+..........+........++.+|+++..+...|. .++++.++.|.+
T Consensus       147 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~  226 (425)
T d1sffa_         147 LTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRA  226 (425)
T ss_dssp             HSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHH
T ss_pred             hcCCCCcccCCcccccCCccccCCccccccccchhhHHHHHHHHHhcccccceEEEEecCccCCCCcccCCHHHHHHHHH
Confidence            3 21             1111111  11111111111111122111122236778887766655665 678889999999


Q ss_pred             HHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHH
Q 009517          298 FCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY  377 (533)
Q Consensus       298 l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~  377 (533)
                      +|++||+++|+||+++++...|.  ...     .+..++.||     +.+++|.++  .|+++|.+++   ++++++.+.
T Consensus       227 lc~~~gillI~DEV~tG~gR~g~--~~a-----~~~~gv~PD-----i~~~gK~l~--gG~P~~av~~---~~~i~~~~~  289 (425)
T d1sffa_         227 LCDEHGIMLIADEVQSGAGRTGT--LFA-----MEQMGVAPD-----LTTFAKSIA--GGFPLAGVTG---RAEVMDAVA  289 (425)
T ss_dssp             HHHHHTCEEEEECTTTTTTTTSS--SSG-----GGGTTSCCS-----EEEECGGGG--TSSCCEEEEE---EHHHHTTSC
T ss_pred             HHHHcCceEEeccccccCCCcch--hhH-----HHhcCCCcc-----ceecccccC--CCcceEEEEE---cHHHHHhhC
Confidence            99999999999999999766553  222     222233788     667999995  4899999998   899988776


Q ss_pred             Hhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCCceEecCCceeEEec
Q 009517          378 KVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAF----NSLEGITCNKAEGAMYLFP  452 (533)
Q Consensus       378 ~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L----~~~~g~~~~~~~gg~~~~~  452 (533)
                      .... .|++.++++++++.+.|+           ..+ .+...++.++..+++.+.|    ++.+.+..++..|.++.+.
T Consensus       290 ~~~~~~T~~gnpl~~aaa~a~L~-----------~i~-~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~Gl~~~i~  357 (425)
T d1sffa_         290 PGGLGGTYAGNPIACVAALEVLK-----------VFE-QENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIE  357 (425)
T ss_dssp             TTSBCCSSSSCHHHHHHHHHHHH-----------HHH-HTTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEETTEEEEE
T ss_pred             CCCCCCCCCcCHHHHHHHHHHHH-----------HHH-HhhhhhhhhhhhhhhhhhhhhhHhhCCceEEEEccccEEEEE
Confidence            5443 789999999999999884           111 1234444455555555544    4445556677777665432


Q ss_pred             ccCCCHHHHHHHHhcCCCC---hHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 009517          453 RIQLPEKAIKAAEAEKTVP---DAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~~  527 (533)
                       +..+..       ....+   ...+..+ +.++||++.++..++     +.||+++.  +++++|++++++++++++++
T Consensus       358 -f~~~~~-------~~~~~~~~~~~~~~~-l~~~Gvl~~~~g~~~-----n~i~~~PpL~it~~eid~~l~~l~~al~ei  423 (425)
T d1sffa_         358 -LFEDGD-------HNKPDAKLTAEIVAR-ARDKGLILLSCGPYY-----NVLRILVPLTIEDAQIRQGLEIISQCFDEA  423 (425)
T ss_dssp             -EBGGGC-------TTSBCHHHHHHHHHH-HHHTTEECEEESTTS-----CEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             -EeccCc-------cCCccHHHHHHHHHH-HHHCCCEEeccCCCC-----CEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence             210000       00001   1233334 456899998754332     27899984  89999999999999999987


Q ss_pred             HH
Q 009517          528 MD  529 (533)
Q Consensus       528 ~~  529 (533)
                      +|
T Consensus       424 kk  425 (425)
T d1sffa_         424 KQ  425 (425)
T ss_dssp             CC
T ss_pred             cC
Confidence            53

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=99.91  E-value=5.6e-24  Score=214.31  Aligned_cols=346  Identities=12%  Similarity=0.111  Sum_probs=238.1

Q ss_pred             chHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhc
Q 009517           75 EIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQ  154 (533)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~  154 (533)
                      .++.++++...++.||++      +||+..|.-..                      ..+++    ++++++++.+++.+
T Consensus        21 ~~i~ra~G~~l~d~dG~~------ylD~~~g~~~~----------------------~lGh~----hp~v~~a~~~~~~~   68 (387)
T d1vefa1          21 LLIVRGQGARVWDAEGNE------YIDCVGGYGVA----------------------NLGHG----NPEVVEAVKRQAET   68 (387)
T ss_dssp             SCEEEEEBTEEEETTSCE------EEESSHHHHTC----------------------TTCBT----CHHHHHHHHHHHHH
T ss_pred             ceEEEeEcCEEEECCCCE------EEEcchhHHhh----------------------hhcCC----cHHHHHHHHHHHHh
Confidence            355666666666667776      78875543221                      11111    68999999999987


Q ss_pred             CCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCC-CCeEEEcCCcCcchHHHHH
Q 009517          155 IPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSE-NDGILCPIPQYPLYSASIA  233 (533)
Q Consensus       155 ~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~-gd~Vlv~~p~~~~~~~~~~  233 (533)
                      ...     .+... ..+.+..+++.+.....  ...+++.++++|++|++.+++.++... ..+|+....+|++....+.
T Consensus        69 ~~~-----~~~~~-~~~~~~~la~~l~~~~~--~~~~~v~f~~sGseA~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~  140 (387)
T d1vefa1          69 LMA-----MPQTL-PTPMRGEFYRTLTAILP--PELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSL  140 (387)
T ss_dssp             CCC-----CCTTS-CCHHHHHHHHHHHHTSC--TTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHH
T ss_pred             hcc-----ccccc-CCchHHHHHHHhhhhcc--ccceeeccccCchHHHHHHHHHHHhhcccceecccccCCCCCccceE
Confidence            321     11111 23455566666654322  334579999999999999999875323 3789999999998665444


Q ss_pred             HhCC-------------eEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCcc-CCCHHHHHHHHHHH
Q 009517          234 LHGG-------------TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ-VLAEENQRAIVDFC  299 (533)
Q Consensus       234 ~~g~-------------~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~-~~s~~~l~~i~~l~  299 (533)
                      ....             .+..+|.+       |++.|++.+.+      ++.+|+++..+...|. .++++.+++|.++|
T Consensus       141 ~~s~~~~~~~~~~p~~~~~~~~p~~-------d~~~l~~~~~~------~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc  207 (387)
T d1vefa1         141 SVTWEPKYREPFLPLVEPVEFIPYN-------DVEALKRAVDE------ETAAVILEPVQGEGGVRPATPEFLRAAREIT  207 (387)
T ss_dssp             HTCCCHHHHGGGCSCSSCEEEECTT-------CHHHHHHHCCT------TEEEEEECSEETTTTSEECCHHHHHHHHHHH
T ss_pred             eccCCccccCCCCCCCCCceEeCCC-------CHHHHHHhcCC------CeEEEEEECCCCCCCCccCCHHHHHHHHHHH
Confidence            4321             23344432       78899888865      7888887755555676 57888999999999


Q ss_pred             HHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHh
Q 009517          300 KKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV  379 (533)
Q Consensus       300 ~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~  379 (533)
                      ++||+++|+||++++|...|.  ......  .++   .||     +.+++|.++  .|+.++.+++   ..++++.+...
T Consensus       208 ~~~g~llI~DEV~tGfgR~G~--~~~~~~--~~v---~PD-----i~~~gK~l~--gG~~~~~~~~---~~~~~~~~~~~  270 (387)
T d1vefa1         208 QEKGALLILDEIQTGMGRTGK--RFAFEH--FGI---VPD-----ILTLAKALG--GGVPLGVAVM---REEVARSMPKG  270 (387)
T ss_dssp             HHHTCEEEEECTTTTTTTTSS--SSTHHH--HTC---CCS-----EEEECGGGG--TTSSCEEEEE---EHHHHHTSCTT
T ss_pred             HHcCceEEecccccccCccCC--Cccccc--CCc---CCc-----eeeecccCC--CCcccccccc---ceeeeeccccC
Confidence            999999999999999866653  233222  233   688     667899995  5899999988   78887776555


Q ss_pred             hh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCceEecCCceeEEecccCC
Q 009517          380 AS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL--EGITCNKAEGAMYLFPRIQL  456 (533)
Q Consensus       380 ~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~g~~~~~~~gg~~~~~~~~~  456 (533)
                      .. .|++.++++++++.+.|+           ..+ .....++.+++.+++.+.|+++  +.+.-++..|.++. +.+..
T Consensus       271 ~~g~T~~gnPla~aaa~a~L~-----------~l~-~~~~~~~v~~~g~~l~~~L~~l~~~~v~~vrg~Gl~~~-ie~~~  337 (387)
T d1vefa1         271 GHGTTFGGNPLAMAAGVAAIR-----------YLE-RTRLWERAAELGPWFMEKLRAIPSPKIREVRGMGLMVG-LELKE  337 (387)
T ss_dssp             SSCCSSTTCHHHHHHHHHHHH-----------HHH-HHTTHHHHHHHHHHHHHHHHTSCCTTEEEEEEETTEEE-EEESS
T ss_pred             CccccCCCCcchhhhcccchh-----------hcc-cccccchHhhhhHHHHHHHHhcCCCceEEEeecceEEE-EEEeC
Confidence            43 788999999999999884           222 2456677778888899999886  44555666665543 33432


Q ss_pred             CHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHH
Q 009517          457 PEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l  524 (533)
                      +              ....+.+++.++|+++.+       .+.+.+|+++.  +++++|++++++|++++
T Consensus       338 ~--------------~~~~~~~~~~~~g~l~~~-------~g~~~ir~~Ppl~it~~~ld~~~~~i~~aL  386 (387)
T d1vefa1         338 K--------------AAPYIARLEKEHRVLALQ-------AGPTVIRFLPPLVIEKEDLERVVEAVRAVL  386 (387)
T ss_dssp             C--------------SHHHHHHHHHHHCEECEE-------SSTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             C--------------chHHHHHHHHHCCCeEEe-------cCCCEEEEECCccCCHHHHHHHHHHHHHHh
Confidence            2              122234556678888775       23347899974  89999999999999886

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=7.7e-22  Score=198.45  Aligned_cols=320  Identities=13%  Similarity=0.067  Sum_probs=225.2

Q ss_pred             CHHHHHHHHHHHhcCCC---CCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCe
Q 009517          141 SADSIERAWQILDQIPG---RATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDG  217 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~---~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~  217 (533)
                      ++++++++.+++.+...   .+...++...-..+|.+.+|++++        .+..++++++..|...++.++. .++|.
T Consensus        54 ~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~~~g--------~e~al~~~SG~~an~~~i~al~-~~~d~  124 (383)
T d1bs0a_          54 HPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLG--------YSRALLFISGFAANQAVIAAMM-AKEDR  124 (383)
T ss_dssp             CHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHT--------CSEEEEESCHHHHHHHHHHHHC-CTTCE
T ss_pred             CHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHHHhcC--------CCceEEecccchhhHHHHHhhc-CCCce
Confidence            68899999998876421   122333444446788888888874        5688999999999999999998 79999


Q ss_pred             EEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHH
Q 009517          218 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVD  297 (533)
Q Consensus       218 Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~  297 (533)
                      |+.....|..+....+..+.+++.++.       .|++++++.+...   .+..++|+++.+.+++|.+.+   +++|.+
T Consensus       125 v~~d~~~h~si~~g~~~~~~~~~~~~h-------nd~~~le~~l~~~---~~~~~~vv~e~v~s~~G~i~p---l~~l~~  191 (383)
T d1bs0a_         125 IAADRLSHASLLEAASLSPSQLRRFAH-------NDVTHLARLLASP---CPGQQMVVTEGVFSMDGDSAP---LAEIQQ  191 (383)
T ss_dssp             EEEETTCCHHHHHHHHTSSSEEEEECT-------TCHHHHHHHHHSC---CSSCEEEEEESBCTTTCCBCC---HHHHHH
T ss_pred             EEeeccccHHHhhccccCCCcceEecc-------hHHHHHHHHhccc---CCCceEEEecCCCCCCCcccc---hhHHHH
Confidence            999999999999999888999888774       3899999988753   335677888899999999999   888889


Q ss_pred             HHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHH
Q 009517          298 FCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY  377 (533)
Q Consensus       298 l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~  377 (533)
                      +|++||+++|+||+++..+++....  ....   .. +..++   +++.||+|.+ |   ...|++.+   +.++++.++
T Consensus       192 l~~~~~~~livDeah~~gv~G~~g~--G~~~---~~-~~~~~---~~~~t~~ka~-g---~~Gg~v~~---~~~~~~~l~  255 (383)
T d1bs0a_         192 VTQQHNGWLMVDDAHGTGVIGEQGR--GSCW---LQ-KVKPE---LLVVTFGKGF-G---VSGAAVLC---SSTVADYLL  255 (383)
T ss_dssp             HHHHTTCEEEEECTTTTTTSSGGGC--CHHH---HT-TCCCS---EEEEESSSTT-S---SCCEEEEE---CHHHHHHHH
T ss_pred             HHHhcCcEEEeecceeeeecCCccc--chHH---Hc-CCccc---cccccccccc-c---cccccccc---chhHHHHHH
Confidence            9999999999999999877743211  1111   11 11233   5678999987 4   34588887   889998887


Q ss_pred             Hhhh---ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeE-Eecc
Q 009517          378 KVAS---VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMY-LFPR  453 (533)
Q Consensus       378 ~~~~---~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~-~~~~  453 (533)
                      ....   .+...++....++.+.++       ...  ....+..+.++.++..++.+.|.++ |+.+......+. ++  
T Consensus       256 ~~~~~~~~s~~~~p~~~aa~~~a~~-------~~~--~~~~~~~~~~l~~~~~~~~~~l~~~-g~~~~~~~s~Ii~v~--  323 (383)
T d1bs0a_         256 QFARHLIYSTSMPPAQAQALRASLA-------VIR--SDEGDARREKLAALITRFRAGVQDL-PFTLADSCSAIQPLI--  323 (383)
T ss_dssp             HHCHHHHSSBCCCHHHHHHHHHHHH-------HHH--SHHHHHHHHHHHHHHHHHHHHHTTS-SCEECSCCSSBCCEE--
T ss_pred             hhchhhhhcccccchHHHHHHHHHH-------HHH--hhhhHHHHHHHHHHHHHHHHHHHhc-CCccCCCCCCEEEEE--
Confidence            6543   222334444344444331       000  1223456667788888999999988 777665554332 22  


Q ss_pred             cCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHH
Q 009517          454 IQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDF  523 (533)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~  523 (533)
                      +..+..            ...+ .+.|.++||++.+......+.|...+||++.  +|+|+|+++++.|+.+
T Consensus       324 ~g~~~~------------a~~~-~~~L~~~Gi~v~~~~~PtVp~g~~~lRi~~~a~ht~edid~l~~~L~~~  382 (383)
T d1bs0a_         324 VGDNSR------------ALQL-AEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN  382 (383)
T ss_dssp             EESHHH------------HHHH-HHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred             ECCHHH------------HHHH-HHHHHHCCceEEEEcCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHhc
Confidence            221111            2233 3455678999987554444556668999995  8999999999988753

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=99.89  E-value=8.9e-24  Score=215.85  Aligned_cols=360  Identities=13%  Similarity=0.039  Sum_probs=224.6

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      ++.++++...++.+|++      +||+..|....                      ..+.+    +|++++++.+++.+.
T Consensus        37 ~i~~a~G~~l~D~~G~~------ylD~~~~~~~~----------------------~lGh~----hp~i~~ai~~~~~~~   84 (427)
T d2gsaa_          37 VFDRVKDAYAWDVDGNR------YIDYVGTWGPA----------------------ICGHA----HPEVIEALKVAMEKG   84 (427)
T ss_dssp             CEEEEEBTEEEETTSCE------EEESSGGGTTT----------------------TTCBT----CHHHHHHHHHHHTTC
T ss_pred             EEEEeecCEEEECCCCE------EEEechhHHHH----------------------hccCC----cHHHHHHHHHHHHhc
Confidence            45666666666777777      88886664322                      11222    689999999999762


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCC-CCeEEEcCCcCcchHHHHHH
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSE-NDGILCPIPQYPLYSASIAL  234 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~-gd~Vlv~~p~~~~~~~~~~~  234 (533)
                          .....+    ..+...+++.+....+   ..+.++++++|++|++.+++.++... ..+|+....+|++....+..
T Consensus        85 ----~~~~~~----~~~~~~la~~~~~~~~---~~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~  153 (427)
T d2gsaa_          85 ----TSFGAP----CALENVLAEMVNDAVP---SIEMVRFVNSGTEACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLV  153 (427)
T ss_dssp             ----SCCSSC----CHHHHHHHHHHHHHST---TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSCGGGCS
T ss_pred             ----Cccccc----hhHHHHHHHHHHhhCC---ccccccccCCcHHHHHHHHHHHHHhcCCCeEEEEecccccCcceeee
Confidence                222222    2345556666665432   34689999999999999999875223 36889899999875432211


Q ss_pred             --------hCC------------eEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCcc-CCCHHHHH
Q 009517          235 --------HGG------------TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ-VLAEENQR  293 (533)
Q Consensus       235 --------~g~------------~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~-~~s~~~l~  293 (533)
                              .+.            ....++       .-|++.+++.+++.   ..++.+||++..+.-.|. .++++.++
T Consensus       154 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-------~~~~~~le~~~~~~---~~~iaavi~Epi~g~~G~~~~~~~~l~  223 (427)
T d2gsaa_         154 KAGSGVATLGLPSSPGVPKKTTANTLTTP-------YNDLEAVKALFAEN---PGEIAGVILEPIVGNSGFIVPDAGFLE  223 (427)
T ss_dssp             SCCHHHHHTTCCSCSSSCHHHHTTEEEEC-------TTCHHHHHHHHTTS---TTTEEEEEECSSBCSSSCBCCCTTHHH
T ss_pred             ecCCcccccCCCCCCCCcccCccceeccC-------cchHHHHHHHHHhC---CCCeEEEEEcCCcCCCCCccCCHHHHH
Confidence                    111            111111       23789999998752   236778887755555565 66778899


Q ss_pred             HHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHH
Q 009517          294 AIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVR  373 (533)
Q Consensus       294 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~  373 (533)
                      +|.++|++||+++|+||++++| ..|.  ....     +..++.||     +.+++|.++  .|+.+|.+++   .++++
T Consensus       224 ~l~~lc~~~~~llI~DEv~tG~-r~g~--~~~~-----~~~gi~PD-----i~~~gK~lg--gG~p~~a~~~---~~~i~  285 (427)
T d2gsaa_         224 GLREITLEHDALLVFDEVMTGF-RIAY--GGVQ-----EKFGVTPD-----LTTLGKIIG--GGLPVGAYGG---KREIM  285 (427)
T ss_dssp             HHHHHHHHTTCEEEEECTTTBT-TTBT--TCHH-----HHTTCCCS-----EEEECGGGG--TTSCCEEEEE---CHHHH
T ss_pred             HHHHHHHHhceeeeeccccccc-eecc--cchH-----HhcCCCHH-----HHhhhhccC--CCcceeeeee---hHHHH
Confidence            9999999999999999999997 3342  2222     22233788     667899995  4899999988   89998


Q ss_pred             HHHHHh----hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCceEecCC
Q 009517          374 EQIYKV----ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL----EGITCNKAE  445 (533)
Q Consensus       374 ~~l~~~----~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~  445 (533)
                      +.+...    ...|++.++++++++.+.|+..           ++ +.+.+.++++.+++.+.|+++    +....+...
T Consensus       286 ~~~~~~~~~~~~~T~~gnpla~AAala~Le~i-----------~~-~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~~~  353 (427)
T d2gsaa_         286 QLVAPAGPMYQAGTLSGNPLAMTAGIKTLELL-----------RQ-PGTYEYLDQITKRLSDGLLAIAQETGHAACGGQV  353 (427)
T ss_dssp             TTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHH-----------TS-TTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             HHhcccCCCcCCCCCCCCchhhHHHHHhhHHh-----------hh-hhHHhhhhHHHHHHHHHHHHHHhhcCCCcEEccc
Confidence            877542    2267899999999999887421           11 234445555555555555443    221223333


Q ss_pred             ceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEecCCcCcHHHHHHHHHHHHH
Q 009517          446 GAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       446 gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~~~~l~~~l~  525 (533)
                      ++++.+.-...+....++....+......+...+ .++||++.|+. +.      .+-+++.+|+++|++++++++++++
T Consensus       354 ggm~~i~~~~~~v~~~~~~~~~d~~~~~~~~~~l-l~~Gv~l~p~~-~~------~~~~~l~~Te~dId~~l~al~~al~  425 (427)
T d2gsaa_         354 SGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGM-LEQGIYLAPSQ-FE------AGFTSLAHTEEDIDATLAAARTVMS  425 (427)
T ss_dssp             TTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHH-HHTTEECCSST-TS------CEECCTTCCHHHHHHHHHHHHHHHT
T ss_pred             CCeEEEEEeccCCCCHHHhhcccHHHHHHHHHHH-HHCCEEECCCC-Cc------ceeCCCCCCHHHHHHHHHHHHHHHH
Confidence            4443222122221111111111111112333344 46899998742 11      1235667999999999999999986


Q ss_pred             H
Q 009517          526 N  526 (533)
Q Consensus       526 ~  526 (533)
                      +
T Consensus       426 ~  426 (427)
T d2gsaa_         426 A  426 (427)
T ss_dssp             C
T ss_pred             h
Confidence            4

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=1.8e-22  Score=199.42  Aligned_cols=323  Identities=13%  Similarity=0.121  Sum_probs=213.5

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      +|++++|+.++..     ....|++.....+|++.+|++++        .+.+++++||++|+..+++++. .+||.+++
T Consensus        13 ~p~v~~A~~~a~~-----g~~~yg~~p~~~~le~~lA~~~G--------~~~~~~~~sGt~A~~~al~a~~-~~g~~~~~   78 (343)
T d1m6sa_          13 TEEMRKAMAQAEV-----GDDVYGEDPTINELERLAAETFG--------KEAALFVPSGTMGNQVSIMAHT-QRGDEVIL   78 (343)
T ss_dssp             CHHHHHHHHTCCC-----CCGGGTCCHHHHHHHHHHHHHTT--------CSEEEEESCHHHHHHHHHHHHC-CTTCEEEE
T ss_pred             CHHHHHHHHhhhc-----CCcccCCCHHHHHHHHHHHHHHC--------CCeEEEeCCHHHHHHHHHHHHh-ccCCceec
Confidence            4778887754422     24468877778999999999864        4578999999999999999998 78999999


Q ss_pred             cCCcCcchH---HHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEe-CCCCCCccCCCHHHHHHHH
Q 009517          221 PIPQYPLYS---ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVI-NPGNPTGQVLAEENQRAIV  296 (533)
Q Consensus       221 ~~p~~~~~~---~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~-~p~NPtG~~~s~~~l~~i~  296 (533)
                      ..+.+..+.   ......+..+..++...   +..|++.+++.+.......+++..+++. .++|++|.+++.+++++|+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~  155 (343)
T d1m6sa_          79 EADSHIFWYEVGAMAVLSGVMPHPVPGKN---GAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEIC  155 (343)
T ss_dssp             ETTCHHHHSSTTHHHHHTCCEEEEECEET---TEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHH
T ss_pred             cccccceeeecccccccccceeecccccc---CccCHHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHHHH
Confidence            998876543   34445566666666543   3679999999987654444566666666 6689999999999999999


Q ss_pred             HHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHH
Q 009517          297 DFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQI  376 (533)
Q Consensus       297 ~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l  376 (533)
                      ++|+++++++++|++|..+.....  .........     ...   ..+.+.+|..   .|.+.|+++.   ..+.+...
T Consensus       156 ~~~~~~g~~~~~D~a~~~~~~~~~--~~~~~~~~~-----~~~---~~~~~~~~~~---~g~~~~~~~~---~~~~~~~~  219 (343)
T d1m6sa_         156 TIAKEHGINVHIDGARIFNASIAS--GVPVKEYAG-----YAD---SVMFCLSKGL---CAPVGSVVVG---DRDFIERA  219 (343)
T ss_dssp             HHHHHHTCEEEEEETTHHHHHHHH--CCCHHHHHH-----TCS---EEEEESSSTT---CCSSCEEEEE---CHHHHHHH
T ss_pred             HHHHhcCeEEEecccccccccccc--ccchhhhcc-----ccc---cccccccccc---cccccccccc---cHHHHhhh
Confidence            999999999999999987655322  111111111     112   2234444433   4777888887   78877766


Q ss_pred             HHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccC
Q 009517          377 YKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQ  455 (533)
Q Consensus       377 ~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~  455 (533)
                      ..... ...+.+.....++.....            ........+...++...+.+.+.++.+.....+.++.++|++++
T Consensus       220 ~~~~~~~~~~~~~~~~~~a~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  287 (343)
T d1m6sa_         220 RKARKMLGGGMRQAGVLAAAGIIA------------LTKMVDRLKEDHENARFLALKLKEIGYSVNPEDVKTNMVILRTD  287 (343)
T ss_dssp             HHHHHHHTCCCSSTHHHHHHHHHH------------HHHSSTTHHHHHHHHHHHHHHHHHHTCBCCGGGCCSSEEEEECT
T ss_pred             HhhCcccccccchhHHHHHhhhhh------------hhhhHHHHHHHHHHHHHhhhHHHHhccCccCCCCCceEEEEEeC
Confidence            65543 323333333333322210            01111222334444555566665554555555666677886654


Q ss_pred             CCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 009517          456 LPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~~  527 (533)
                      .+.          . ....++ +.|.++||.+.|.       +.+++||++.  .++|+|++++++|+++++++
T Consensus       288 ~~~----------~-~a~~l~-~~L~~~Gi~v~~~-------~~~~iRi~~~~~~t~edid~~v~~l~~v~~~~  342 (343)
T d1m6sa_         288 NLK----------V-NAHGFI-EALRNSGVLANAV-------SDTEIRLVTHKDVSRNDIEEALNIFEKLFRKF  342 (343)
T ss_dssp             TSS----------S-CHHHHH-HHHHHHTEECEEE-------ETTEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCc----------c-cHHHHH-HHHHHCCCEEecC-------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            221          1 233444 4466789999873       2338999885  78999999999999999886

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.89  E-value=1e-20  Score=189.36  Aligned_cols=326  Identities=16%  Similarity=0.115  Sum_probs=220.9

Q ss_pred             CHHHHHHHHHHHhcCCC---CCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhc-cCCCC
Q 009517          141 SADSIERAWQILDQIPG---RATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI-RSEND  216 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~---~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-~~~gd  216 (533)
                      ++++++++.+.+.+...   .+...++...-..+|.+.+|++++        .+..++.++|..|...++.++. ..++|
T Consensus        61 ~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~lA~~~g--------~e~all~~sG~~An~~~i~~l~~~~~~d  132 (396)
T d2bwna1          61 HPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQ--------KEAALVFSSAYNANDATLSTLRVLFPGL  132 (396)
T ss_dssp             CHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTT--------CSEEEEESCHHHHHHHHHHHHHHHSTTC
T ss_pred             CHHHHHHHHHHHHHhCCCccccccccCCchHHHHHHHHHHHHhC--------CCceeeeecchHHHHHHHHHHhcccCCC
Confidence            68999999998886421   012222233324577777777754        5678888888888888888773 15788


Q ss_pred             eEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHH
Q 009517          217 GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIV  296 (533)
Q Consensus       217 ~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~  296 (533)
                      .|+...-.+......++..+++++.++..       |.+++++.++...  ..+.+.|++....+.+|.+.|   +++|+
T Consensus       133 ~i~~D~~~Hasi~~g~~ls~a~~~~f~Hn-------d~~~l~~l~~~~~--~~~~~~iv~egvySmdGd~ap---l~~l~  200 (396)
T d2bwna1         133 IIYSDSLNHASMIEGIKRNAGPKRIFRHN-------DVAHLRELIAADD--PAAPKLIAFESVYSMDGDFGP---IKEIC  200 (396)
T ss_dssp             EEEEETTCCHHHHHHHHHSCCCEEEECTT-------CHHHHHHHHHHSC--TTSCEEEEEESBCTTTCCBCC---HHHHH
T ss_pred             ceeehhhhhhccchhhhccccCceEeecc-------hHHHhhhHHhhhc--ccCceeEEEEeeccCcccccc---cHhHH
Confidence            88888888888999999999999887643       7888888776532  124567777788899999999   99999


Q ss_pred             HHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHH
Q 009517          297 DFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQI  376 (533)
Q Consensus       297 ~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l  376 (533)
                      ++|++||+++++||+++-.+++....  .+..   ..+  ..+...|+++||||+| |..   .||+.+   ++++++.+
T Consensus       201 ~L~~~y~~~L~vDeAHs~Gv~G~~G~--G~~~---~~~--~~~~~di~~gTlsKa~-g~~---Gg~v~~---~~~~i~~l  266 (396)
T d2bwna1         201 DIAEEFGALTYIDEVHAVGMYGPRGA--GVAE---RDG--LMHRIDIFNGTLAKAY-GVF---GGYIAA---SARMVDAV  266 (396)
T ss_dssp             HHHHHHTCEEEEECTTTTTTSSTTSC--CHHH---HHT--CGGGCSEEEEESSSTT-CSC---CEEEEE---CHHHHHHH
T ss_pred             HHhhhhcceeeeccceeeeeeccccc--cchh---hcC--Cceeeeeeeecccccc-ccc---ccccch---hHHHHHHH
Confidence            99999999999999999877753322  1111   111  1122348899999998 433   488887   99999998


Q ss_pred             HHhhh--ccccC-ChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecc
Q 009517          377 YKVAS--VNLCS-NISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPR  453 (533)
Q Consensus       377 ~~~~~--~~~~~-~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~  453 (533)
                      .....  ..+++ ++....++.+.++..         -.++.++.+..+..+.+++++.|.++ |+.+.........+ -
T Consensus       267 ~~~~~~~ifStalpp~~~aa~~~al~i~---------~~~~~~~~r~~l~~~~~~~~~~l~~~-g~~~~~~~spIvpv-~  335 (396)
T d2bwna1         267 RSYAPGFIFSTSLPPAIAAGAQASIAFL---------KTAEGQKLRDAQQMHAKVLKMRLKAL-GMPIIDHGSHIVPV-V  335 (396)
T ss_dssp             HHHCHHHHTSBCCCHHHHHHHHHHHHHH---------TSHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCSSSCEEE-E
T ss_pred             HhhcchhhhcccCcHHHHHHHHHHHHHh---------hcchHHHHHHHHHHHHHHHHHHHHhc-CCCcCCCCCCEEEE-E
Confidence            86543  22333 333333333333200         00223445666777888888888887 77665444433221 1


Q ss_pred             cCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHH
Q 009517          454 IQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDF  523 (533)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~  523 (533)
                      +..+..            ...+.+++|+++||++.+......+.+...+||++.  +|+++|++++++|+++
T Consensus       336 ig~~~~------------~~~~a~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~lsa~ht~edId~l~~~L~~i  395 (396)
T d2bwna1         336 IGDPVH------------TKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLL  395 (396)
T ss_dssp             CCCHHH------------HHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred             eCCHHH------------HHHHHHHHHHhCCEEEEEECCCcCCCCCeeEEEEeCccCCHHHHHHHHHHHHHh
Confidence            222221            234456778889999987655554556668999995  8999999999999875

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=5.4e-21  Score=194.27  Aligned_cols=326  Identities=14%  Similarity=0.135  Sum_probs=225.2

Q ss_pred             CCCHHHHHHHHHHHhcCCCCCc-cccCC----CcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHh---
Q 009517          139 LFSADSIERAWQILDQIPGRAT-GAYSH----SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL---  210 (533)
Q Consensus       139 ~~p~~v~~~~~~~~~~~~~~~~-~~Y~~----~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l---  210 (533)
                      +.|..+++++.+.+.+...+.. ..|..    ..-+.+.|+.+|++++.     ..+++|++|.|+++++..++..+   
T Consensus        33 ~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~-----~~~~~i~~~~~~T~~~~~~~~~~~~~  107 (405)
T d1jf9a_          33 QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINA-----RSAEELVFVRGTTEGINLVANSWGNS  107 (405)
T ss_dssp             CCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTC-----SCGGGEEEESSHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHcCC-----CCcccccccCcHHHHHHHHHhccccc
Confidence            3489999999888876332100 01110    11245667788888752     23579999999999999888762   


Q ss_pred             ccCCCCeEEEcCCcCcchHH----HHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccC
Q 009517          211 IRSENDGILCPIPQYPLYSA----SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV  286 (533)
Q Consensus       211 ~~~~gd~Vlv~~p~~~~~~~----~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~  286 (533)
                      ...+||+|++.+-.|+....    ..+..|+++..+|+++++  .+|++.+++++++      +|++|++.+.+|.||.+
T Consensus       108 ~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~~~g--~~~~~~~~~~i~~------~t~lv~~~~v~~~tG~~  179 (405)
T d1jf9a_         108 NVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDG--TLQLETLPTLFDE------KTRLLAITHVSNVLGTE  179 (405)
T ss_dssp             HCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTS--CBCGGGHHHHCCT------TEEEEEEESBCTTTCCB
T ss_pred             ccCCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCCCCC--cCCHHHHHHhccC------CcEEEEEecCCCccccc
Confidence            22689999999999987544    445679999999998653  6899999998877      89999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEe
Q 009517          287 LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVT  366 (533)
Q Consensus       287 ~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~  366 (533)
                      +|   +++|.++|+++|+++++|.+++-    |.. ..++..+       ..|   +++.|+.|.+ |++|  +|++.+ 
T Consensus       180 ~p---i~~i~~~~~~~g~~~~vD~~q~~----g~~-~id~~~~-------~~D---~~~~s~hK~~-Gp~G--~g~l~v-  237 (405)
T d1jf9a_         180 NP---LAEMITLAHQHGAKVLVDGAQAV----MHH-PVDVQAL-------DCD---FYVFSGHKLY-GPTG--IGILYV-  237 (405)
T ss_dssp             CC---HHHHHHHHHHTTCEEEEECTTTT----TTS-CCCHHHH-------TCS---EEEEEGGGTT-SCSS--CEEEEE-
T ss_pred             Cc---hHHhhhHHHHcCCeeecccceec----ccc-ccchhhc-------CCc---eeeccccccc-cCCC--ceeeee-
Confidence            99   99999999999999999999875    321 2233332       356   7789999987 7777  566666 


Q ss_pred             cCCHHHHHHHHHhh----------------------h-ccccCChHHHHHHHHHcCCCCCCChhHHHHHH-HHHHHHHHH
Q 009517          367 GFSAEVREQIYKVA----------------------S-VNLCSNISGQILASLVMSPPKVGDESYESYCA-ERDGILSSL  422 (533)
Q Consensus       367 ~~~~~~~~~l~~~~----------------------~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~-~~~~~~~~~  422 (533)
                        ++++++.+....                      . ...+.+..+..++..+++          .+.+ ..+.+.++.
T Consensus       238 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~----------~~~~~g~~~i~~~~  305 (405)
T d1jf9a_         238 --KEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALE----------YVSALGLNNIAEYE  305 (405)
T ss_dssp             --CHHHHTTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHH----------HHHHHCHHHHHHHH
T ss_pred             --chhhhcccCcccccccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHH----------HHHHhChHHHHHHH
Confidence              787765443211                      0 113455556666665552          1111 245666667


Q ss_pred             HHHHHHHHHHHhcCCCceEecCC--ceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCC-----
Q 009517          423 ARRAKTLEDAFNSLEGITCNKAE--GAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ-----  495 (533)
Q Consensus       423 ~~~~~~l~~~L~~~~g~~~~~~~--gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~-----  495 (533)
                      ....+++.+.++.++.+....|.  ++...+ .++  .          . .... +...|.++||.+..|+.+..     
T Consensus       306 ~~L~~~~~~~l~~~~~~~~~~~~~r~~ivsf-~~~--~----------~-~~~~-~~~~L~~~gI~v~~G~~c~~~~~~~  370 (405)
T d1jf9a_         306 QNLMHYALSQLESVPDLTLYGPQNRLGVIAF-NLG--K----------H-HAYD-VGSFLDNYGIAVRTGHHCAMPLMAY  370 (405)
T ss_dssp             HHHHHHHHHHHTTSTTEEEESCTTCCSEEEE-EET--T----------C-CHHH-HHHHHHHTTEECEEECTTCHHHHHH
T ss_pred             HHHHHHHHhhhhcCCcccccCCcCcCcEEEE-EcC--C----------C-CHHH-HHHHHHHCCcEEEccchhhhhHHHh
Confidence            77777888888888666665543  444443 232  1          1 1222 34567889999998876531     


Q ss_pred             CCCCceEEEEec--CCcCcHHHHHHHHHHHHHH
Q 009517          496 VPGTWHFRCTIL--PQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       496 ~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~  526 (533)
                      ....+.||||++  .+++||+.+++.|+++++-
T Consensus       371 ~~~~g~iRiS~~~ynt~eDid~l~~~l~~i~r~  403 (405)
T d1jf9a_         371 YNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRL  403 (405)
T ss_dssp             TTCSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence            112348999997  7889999999999888764

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.88  E-value=6.7e-22  Score=200.44  Aligned_cols=364  Identities=10%  Similarity=0.034  Sum_probs=222.8

Q ss_pred             cCccccccchHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHH
Q 009517           67 KCEYAVRGEIVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIE  146 (533)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~  146 (533)
                      ...|.|.+.++.++++...++.||++      +||+..|....                      ..+++    +|++++
T Consensus        15 ~~~y~p~P~~i~~a~G~~l~D~dG~~------ylD~~~g~~~~----------------------~lGh~----~p~v~~   62 (404)
T d1z7da1          15 AHNYDPIPVVLKRAKGVFVYDVNDKR------YYDFLSAYSSV----------------------NQGHC----HPNILN   62 (404)
T ss_dssp             CCCCCCEEEEEEEEEBTEEEETTCCE------EEESSHHHHTT----------------------TTCBT----CHHHHH
T ss_pred             CCCCCCCCceEEEeecCEEEECCCCE------EEEccccHHHH----------------------hhhcC----cHHHHH
Confidence            34455555566777777777777777      77776553221                      11212    689999


Q ss_pred             HHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc---------CCCCe
Q 009517          147 RAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR---------SENDG  217 (533)
Q Consensus       147 ~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~---------~~gd~  217 (533)
                      ++.+++.+...  .   .... .....+.+++.+....+    .+.+.++++++++.+.+++.++.         ....+
T Consensus        63 Ai~~q~~~~~~--~---~~~~-~~~~~~~~~~~~~~~~~----~~~v~~~~sgs~a~~~a~k~ar~~~~~~~~~~~~~~~  132 (404)
T d1z7da1          63 AMINQAKNLTI--C---SRAF-FSVPLGICERYLTNLLG----YDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAK  132 (404)
T ss_dssp             HHHHHHTTCSC--C---CTTS-EEHHHHHHHHHHHHHHT----CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCE
T ss_pred             HHHHHHHhCCC--c---cccc-chHHHHHHHHhhhhccc----cceeeeeccccchHHHHHHHHHHHHhhcccccccccc
Confidence            99999986321  1   1111 22223334444444323    56899999999999999987641         11246


Q ss_pred             EEEcCCcCcchHHHHHHhCCeEE----EEecCCCCCC---CCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCcc-CCCH
Q 009517          218 ILCPIPQYPLYSASIALHGGTLV----PYYLDEATGW---GLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ-VLAE  289 (533)
Q Consensus       218 Vlv~~p~~~~~~~~~~~~g~~~~----~v~~~~~~~~---~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~-~~s~  289 (533)
                      ++.....|++.............    ..|.... .+   .-+.+.++..+..     .++.+||++..+...|. .+++
T Consensus       133 ~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~-----~~iAavi~EPi~g~~G~~~~~~  206 (404)
T d1z7da1         133 IVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQ-FSKVPYDDLEALEEELKD-----PNVCAFIVEPIQGEAGVIVPSD  206 (404)
T ss_dssp             EEEETTC--------------------------C-EEEECTTCHHHHHHHHTS-----TTEEEEEECSSBSTTTSBCCCT
T ss_pred             cccccccCCCCcccccccccccccccCCCCCCcc-ccccccchHHHHHHHhcC-----CCEEEEEEEEEcCCCCCccCCH
Confidence            77788888775543333211100    1110000 00   1256777666644     26888887766666776 5677


Q ss_pred             HHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCC-CeeEEEEEecC
Q 009517          290 ENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGF  368 (533)
Q Consensus       290 ~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G-~riG~v~~~~~  368 (533)
                      +.+++|.++|++||+++|+||++++|...|.  ...+.     ..++.||     +.+++|.++|  | +++|.+++   
T Consensus       207 ~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~--~~~~e-----~~gv~PD-----ivt~gK~l~g--G~~p~~~v~~---  269 (404)
T d1z7da1         207 NYLQGVYDICKKYNVLFVADEVQTGLGRTGK--LLCVH-----HYNVKPD-----VILLGKALSG--GHYPISAVLA---  269 (404)
T ss_dssp             THHHHHHHHHHHTTCEEEEECTTTTTTTTSS--SSGGG-----GGTCCCS-----EEEECGGGGT--TSSCCEEEEE---
T ss_pred             HHHHHHHHHHHHcCCEEEEEcCccCCCcccc--ccccc-----ccCCCCC-----EEEEcccccC--CCCCcccccc---
Confidence            7899999999999999999999999766553  33322     2233788     5589999943  5 89999998   


Q ss_pred             CHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHH----HHHHHHHHhcCCCceEec
Q 009517          369 SAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARR----AKTLEDAFNSLEGITCNK  443 (533)
Q Consensus       369 ~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~L~~~~g~~~~~  443 (533)
                      .+++++.+..... .|+++++++++|+.+.|+.           .+ .+...+...++    .+.+.+.+++.+.+.-++
T Consensus       270 ~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~-----------~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~vr  337 (404)
T d1z7da1         270 NDDIMLVIKPGEHGSTYGGNPLAASICVEALNV-----------LI-NEKLCENAEKLGGPFLENLKRELKDSKIVRDVR  337 (404)
T ss_dssp             CHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHH-----------HH-HTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEE
T ss_pred             hHHHHccCCCCCcCcCCCCCcchhhhhhhhhhh-----------hh-cchhhhhhccchhHHHHHHHHHHhcCCCeEEEE
Confidence            8999877765543 7789999999999988741           11 12223333333    334445555556666677


Q ss_pred             CCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHH
Q 009517          444 AEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLT  521 (533)
Q Consensus       444 ~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~  521 (533)
                      ..|.|+.+ .+..+.           ....... ..+.++||++.|.       +.+.|||++.  +++++|++++++|+
T Consensus       338 g~Gl~~~i-~~~~~~-----------~~~~~~~-~~l~~~Gl~~~~~-------~~~~ir~~Ppl~it~~~id~~~~~l~  397 (404)
T d1z7da1         338 GKGLLCAI-EFKNEL-----------VNVLDIC-LKLKENGLITRDV-------HDKTIRLTPPLCITKEQLDECTEIIV  397 (404)
T ss_dssp             EETTEEEE-EECTTT-----------CCHHHHH-HHHHHTTEECCEE-------TTTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred             eeCcEEEE-EEcCCc-----------ccHHHHH-HHHHhCCeEEecC-------CCCEEEEECCcCCCHHHHHHHHHHHH
Confidence            77776553 333221           1122333 4456689998752       2337999874  89999999999999


Q ss_pred             HHHHHH
Q 009517          522 DFHKNF  527 (533)
Q Consensus       522 ~~l~~~  527 (533)
                      ++++++
T Consensus       398 ~alk~~  403 (404)
T d1z7da1         398 KTVKFF  403 (404)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            999875

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=1.9e-20  Score=190.65  Aligned_cols=326  Identities=13%  Similarity=0.097  Sum_probs=215.7

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc------CC
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR------SE  214 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~------~~  214 (533)
                      ++++++++.+++.+...  .. + ... ..+-...+++.+....+  ...+.+++++++++|++.+++..+.      .+
T Consensus        61 ~p~i~~Ai~~q~~~~~~--~~-~-~~~-~~~~~~~l~~~l~~~~~--~~~~~v~f~~sGseA~e~A~k~ar~~~~~~g~~  133 (429)
T d1s0aa_          61 HPQLNAAMKSQIDAMSH--VM-F-GGI-THAPAIELCRKLVAMTP--QPLECVFLADSGSVAVEVAMKMALQYWQAKGEA  133 (429)
T ss_dssp             CHHHHHHHHHHHHHCSC--CC-C-SSE-ECHHHHHHHHHHHHHSC--TTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             cHHHHHHHHHHHHhcCC--cc-c-CCc-cchHHHHHHHHHHhhhc--cCcceeeeccccccchhhhhhhhhheeeccccc
Confidence            79999999999987421  11 1 111 11222333444433322  3456899999999999999987741      23


Q ss_pred             CCeEEEcCCcCcchHHHHHHhCC--------------eEEEEecCCCC-CCC---CCHHHHHHHHHHHHhcCCCeeEEEE
Q 009517          215 NDGILCPIPQYPLYSASIALHGG--------------TLVPYYLDEAT-GWG---LETSEVKKQLEAAKAKGITVRALVV  276 (533)
Q Consensus       215 gd~Vlv~~p~~~~~~~~~~~~g~--------------~~~~v~~~~~~-~~~---ld~~~l~~~i~~~~~~g~~~~~iil  276 (533)
                      ..+|+....+|++..........              .....|..... ...   -+++.+++.+...   +.++.+|++
T Consensus       134 ~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~iaaviv  210 (429)
T d1s0aa_         134 RQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAH---RHEIAAVII  210 (429)
T ss_dssp             CCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHH---TTTEEEEEE
T ss_pred             ccEEEEecCCccccchhhhhhcCCccccccccCccccccccccccccccccccchhhhhhhhhhhhhc---CCccceeee
Confidence            46899999999986544433221              11222221110 111   2455565555543   447888887


Q ss_pred             eCC-CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCC
Q 009517          277 INP-GNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYG  354 (533)
Q Consensus       277 ~~p-~NPtG~-~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~g  354 (533)
                      +.. ++-.|. .++++.+++|.++|++||+++|+||++++|...|.  +.....  .++   .||     +.+++|.++|
T Consensus       211 EPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~--~~~~~~--~~v---~PD-----i~~~gK~l~g  278 (429)
T d1s0aa_         211 EPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGK--LFACEH--AEI---APD-----ILCLGKALTG  278 (429)
T ss_dssp             CSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSGGGG--GTC---CCS-----EEEECGGGGT
T ss_pred             cceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhcccccccccc--cccccc--cee---ccc-----cccccccccc
Confidence            755 465555 67899999999999999999999999999866653  232211  223   688     6678999943


Q ss_pred             CCCCeeEEEEEecCCHHHHHHHHHh------hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 009517          355 ECGKRGGYMEVTGFSAEVREQIYKV------ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKT  428 (533)
Q Consensus       355 l~G~riG~v~~~~~~~~~~~~l~~~------~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (533)
                       .+.++|++++   .+++++.+...      ...|++.++++++++.+.|+           ..+ .++..++.++..++
T Consensus       279 -G~~p~~av~~---~~~i~~~~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~-----------~i~-~~~~~~~~~~~g~~  342 (429)
T d1s0aa_         279 -GTMTLSATLT---TREVAETISNGEAGCFMHGPTFMGNPLACAAANASLA-----------ILE-SGDWQQQVADIEVQ  342 (429)
T ss_dssp             -SSSCCEEEEE---CHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHH-----------HHH-TCHHHHHHHHHHHH
T ss_pred             -ccccccchhh---HHHHHhccCCCCCcceeecCCCCCCcccchhhhcccc-----------ccc-cccccchhhHHHHH
Confidence             3489999998   99999888653      13678899999999999884           121 24466677777788


Q ss_pred             HHHHHhcC---CCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEE
Q 009517          429 LEDAFNSL---EGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCT  505 (533)
Q Consensus       429 l~~~L~~~---~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis  505 (533)
                      +.+.|+++   +.+.-++..|.|..+ ++..|.            .... +...+.++||++.|.   +     +.||++
T Consensus       343 l~~~L~~l~~~~~v~~vrg~Gl~~~~-e~~~~~------------~~~~-~~~~~~~~Gl~~~~~---g-----~~i~~~  400 (429)
T d1s0aa_         343 LREQLAPARDAEMVADVRVLGAIGVV-ETTHPV------------NMAA-LQKFFVEQGVWIRPF---G-----KLIYLM  400 (429)
T ss_dssp             HHHHHGGGGGCTTEEEEEEETTEEEE-EESSCB------------CHHH-HHHHHHHTTEECCCB---T-----TEEEEC
T ss_pred             HHHHHHHhccCCceEEEeecccEEEE-EecCcc------------cHHH-HHHHHHHCCcEEEec---C-----CEEEEe
Confidence            88888665   556667777766543 344332            1223 335556689998762   2     279999


Q ss_pred             ec--CCcCcHHHHHHHHHHHHHH
Q 009517          506 IL--PQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       506 ~~--~~~e~i~~~~~~l~~~l~~  526 (533)
                      +.  +++++|++++++|++++++
T Consensus       401 Ppl~it~~eid~~~~~l~~al~e  423 (429)
T d1s0aa_         401 PPYIILPQQLQRLTAAVNRAVQD  423 (429)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHTSS
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHh
Confidence            74  8999999999999998765

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=99.86  E-value=2.2e-20  Score=182.40  Aligned_cols=326  Identities=13%  Similarity=0.122  Sum_probs=200.9

Q ss_pred             cccCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCC
Q 009517          135 ETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSE  214 (533)
Q Consensus       135 ~~~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~  214 (533)
                      +|+.+.+|+|++++.+....    ....|++..+..++|+.+|++++      .++++|++|+|+++++..++..+. .+
T Consensus         7 d~~~g~~P~v~eAl~~~~~~----~~~~y~~~~~~~~lr~~ia~~~g------~~~~~v~~tsggtean~~a~~~~~-~~   75 (340)
T d1svva_           7 DYSVGMHPKILDLMARDNMT----QHAGYGQDSHCAKAARLIGELLE------RPDADVHFISGGTQTNLIACSLAL-RP   75 (340)
T ss_dssp             SCSSCCCHHHHHHHHHHTTC----CCCSTTCSHHHHHHHHHHHHHHT------CTTSEEEEESCHHHHHHHHHHHHC-CT
T ss_pred             CCCCCCCHHHHHHHHHHhhc----CCCCCCCCHHHHHHHHHHHHHhC------CCcceEEEcCCHHHHHHHHHHHHh-hh
Confidence            34555588999999887654    35678888878899999999986      567899999999999999999998 78


Q ss_pred             CCeEEEcCCcCcchHHHHHH--hCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHH
Q 009517          215 NDGILCPIPQYPLYSASIAL--HGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQ  292 (533)
Q Consensus       215 gd~Vlv~~p~~~~~~~~~~~--~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l  292 (533)
                      ++++++..+.+..+......  .+.........   ....+.+....+.............++++.+.|++|.+.+.+++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (340)
T d1svva_          76 WEAVIATQLGHISTHETGAIEATGHKVVTAPCP---DGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQEL  152 (340)
T ss_dssp             TEEEEEETTSHHHHSSTTHHHHTTCCEEEECCT---TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHH
T ss_pred             ccccccccccceeeeecccccccceeeeecccc---cccccchhHHHHhhhhhcccCCcceeeeecccccccccccHHHh
Confidence            99999888887765433222  33333333322   12345555555544422222234455555555567778888999


Q ss_pred             HHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHH
Q 009517          293 RAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEV  372 (533)
Q Consensus       293 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~  372 (533)
                      ..+.+.|++++.++++|++|....................     ..   +...+..|..   .+.+.++...   ....
T Consensus       153 ~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~-----~~---~~~~~~~~~~---~~~~~~~~~~---~~~~  218 (340)
T d1svva_         153 EDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARL-----TD---MFYIGATKAG---GMFGEALIIL---NDAL  218 (340)
T ss_dssp             HHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHH-----CS---EEEEECTTTT---CSSCEEEEEC---SGGG
T ss_pred             hhhhcccccccceeeeeccceeeeeccccccccccccccc-----ce---eeecCCcccc---cccccccccc---chhh
Confidence            9999999999999999999976444332222222222111     12   3344555543   3455555544   3333


Q ss_pred             HHHHHHhhh---ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeE
Q 009517          373 REQIYKVAS---VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMY  449 (533)
Q Consensus       373 ~~~l~~~~~---~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~  449 (533)
                      .........   .+........+++...+...            ......++...+++++.+.|+++ |+.+..|..+.+
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~p~~~~~  285 (340)
T d1svva_         219 KPNARHLIKQRGALMAKGWLLGIQFEVLMKDN------------LFFELGAHSNKMAAILKAGLEAC-GIRLAWPSASNQ  285 (340)
T ss_dssp             CTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTT------------HHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCCSSSE
T ss_pred             hhhhhhhcccccCccchhhHHHHHHHHHhhhh------------HHHHHHHHHHHHHhhhHHHHhcC-CCeeecCCCceE
Confidence            332222221   22222333334444444321            12334456677778888899887 998887777778


Q ss_pred             EecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHH
Q 009517          450 LFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTD  522 (533)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~  522 (533)
                      ++++++  .               ....+++++..+...+..    ..+.+.||||++  +|+++|++++++|++
T Consensus       286 v~~~~~--~---------------~~~~~l~~~~~~~~~~~~----~~~~~~vR~s~~~~~t~edid~~l~~l~~  339 (340)
T d1svva_         286 LFPILE--N---------------TMIAELNNDFDMYTVEPL----KDGTCIMRLCTSWATEEKECHRFVEVLKR  339 (340)
T ss_dssp             ECBEEE--H---------------HHHHHHTTTEECEEEEEE----TTTEEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred             EEEeCC--H---------------HHHHHHHHhhhhhccccc----CCCCcEEEEECCCCCCHHHHHHHHHHHhc
Confidence            886554  1               113344443222222211    344569999885  899999999999876

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=99.86  E-value=2.2e-19  Score=182.38  Aligned_cols=325  Identities=16%  Similarity=0.179  Sum_probs=223.3

Q ss_pred             CCHHHHHHHHHHHhcCCCCC-ccccCC----CcccHHHHHHHHHHHHhhcCCCCC-CCCEEEcCChHHHHHHHHHHh---
Q 009517          140 FSADSIERAWQILDQIPGRA-TGAYSH----SQGIKGLRDTIAAGIEARDGFPAD-PNDIFLTDGASPAVHMMMQLL---  210 (533)
Q Consensus       140 ~p~~v~~~~~~~~~~~~~~~-~~~Y~~----~~G~~~lr~aia~~~~~~~g~~~~-~~~i~~t~G~~~al~~~~~~l---  210 (533)
                      +|+.|++++.+.+.+...+. ...|..    ..-+.+.|+.++++++      .+ ++.|++++++++++..++..+   
T Consensus        34 ~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llg------a~~~~~i~~~~~tt~~~n~~~~~~~~~  107 (408)
T d1t3ia_          34 KPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFIN------ARSPREIVYTRNATEAINLVAYSWGMN  107 (408)
T ss_dssp             CCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTT------CSCGGGEEEESSHHHHHHHHHHHTHHH
T ss_pred             CCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhC------CCCcccEEeecchHHHHHHHHhhcccc
Confidence            38999999988887643210 001111    0123456777777765      54 577999999999998888652   


Q ss_pred             ccCCCCeEEEcCCcCcchHH----HHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccC
Q 009517          211 IRSENDGILCPIPQYPLYSA----SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV  286 (533)
Q Consensus       211 ~~~~gd~Vlv~~p~~~~~~~----~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~  286 (533)
                      ...+|++|++.+-.|+....    ..+..|.++..+|.+..  ...+.+.+++++++      ++++|.+.+.+|-||..
T Consensus       108 ~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~~--~~~~~~~l~~~~~~------~t~lv~i~~~~~~tG~~  179 (408)
T d1t3ia_         108 NLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQ--ESFDLEHFKTLLSE------KTKLVTVVHISNTLGCV  179 (408)
T ss_dssp             HCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTT--SSBCHHHHHHHCCT------TEEEEEEESBCTTTCBB
T ss_pred             ccCCCCEEEeecccchhhhhhhhhhhhccCceEeeeecccc--ccccHHHhhhccCC------CceEEEEeccccccccc
Confidence            22589999999988887544    34556999999988754  36789999998876      89999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEe
Q 009517          287 LAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVT  366 (533)
Q Consensus       287 ~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~  366 (533)
                      ++   +++|.++|+++|+++++|.++.-    |..+ .++..+       ..|   +++.|..|.+ |.+|  +|++.. 
T Consensus       180 ~p---~~~i~~~~~~~g~~~ivDa~q~~----g~~~-id~~~~-------~~D---~~~~s~hK~~-gp~G--~g~l~v-  237 (408)
T d1t3ia_         180 NP---AEEIAQLAHQAGAKVLVDACQSA----PHYP-LDVQLI-------DCD---WLVASGHKMC-APTG--IGFLYG-  237 (408)
T ss_dssp             CC---HHHHHHHHHHTTCEEEEECTTTT----TTSC-CCHHHH-------TCS---EEEEEGGGTT-SCTT--CEEEEE-
T ss_pred             Cc---HHHHhhhhhccCceeeeccceec----cccc-cccccc-------CCc---eEEecccccc-CCCC--cccccc-
Confidence            99   88899999999999999999875    3222 333332       345   7788999976 7566  566666 


Q ss_pred             cCCHHHHHHHHHhhh----------------------ccccCChHHHHHHHHHcCCCCCCChhHHHHHH-HHHHHHHHHH
Q 009517          367 GFSAEVREQIYKVAS----------------------VNLCSNISGQILASLVMSPPKVGDESYESYCA-ERDGILSSLA  423 (533)
Q Consensus       367 ~~~~~~~~~l~~~~~----------------------~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~-~~~~~~~~~~  423 (533)
                        .++....+.....                      ...+.+.....++..+++          .+.+ ..+++.++..
T Consensus       238 --~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~----------~~~~~g~~~i~~~~~  305 (408)
T d1t3ia_         238 --KEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVD----------YLTDLGMENIHNYEV  305 (408)
T ss_dssp             --CHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHH----------HHHHHCHHHHHHHHH
T ss_pred             --chhhhhcCCceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHH----------HHHHcCHHHHHHHHH
Confidence              7877655432110                      123445555555555552          1111 2466677777


Q ss_pred             HHHHHHHHHHhcCCCceEecCC------ceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCC--
Q 009517          424 RRAKTLEDAFNSLEGITCNKAE------GAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQ--  495 (533)
Q Consensus       424 ~~~~~l~~~L~~~~g~~~~~~~------gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~--  495 (533)
                      +..+++.+.+.+.+++.++.+.      ++...+ .++.            . +... +...|.++||.+..|..+..  
T Consensus       306 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~iv~f-~~~~------------~-~~~~-v~~~L~~~gI~v~~G~~c~~~~  370 (408)
T d1t3ia_         306 ELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASF-NVAG------------L-HASD-VATMVDQDGIAIRSGHHCTQPL  370 (408)
T ss_dssp             HHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEE-EETT------------B-CHHH-HHHHHHTTTEECBCSCTTCHHH
T ss_pred             HHHhHHhhhhccCccccccCCCccccCcceEEEE-EeCC------------C-CHHH-HHHHHhhCCcEEecCcccccHH
Confidence            8888899999988887766432      333332 1221            1 1223 33567889999998877631  


Q ss_pred             ---CCCCceEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 009517          496 ---VPGTWHFRCTIL--PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       496 ---~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~~  527 (533)
                         ....+.||||+.  .|++||+++++.|+++++.+
T Consensus       371 ~~~~~~~g~vRiS~~~ynt~~did~li~~L~~~~~~f  407 (408)
T d1t3ia_         371 HRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRFF  407 (408)
T ss_dssp             HHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHhhcCCccEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence               012348999997  79999999999999998764

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=99.85  E-value=1.1e-19  Score=185.65  Aligned_cols=340  Identities=12%  Similarity=0.045  Sum_probs=208.1

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCC-CCeEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSE-NDGIL  219 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~-gd~Vl  219 (533)
                      ++++++++.+++.+... ....+     ..+.+..+|+.+.+...  ...++++++++|++|++.+++.++... .++|+
T Consensus        59 ~p~v~~ai~~q~~~~~~-~~~~~-----~~~~~~~la~~L~~~~~--~~~~~v~f~~sGseA~e~Alk~Ar~~t~r~~i~  130 (431)
T d1zoda1          59 HPEIVSVIGEYAGKLDH-LFSEM-----LSRPVVDLATRLANITP--PGLDRALLLSTGAESNEAAIRMAKLVTGKYEIV  130 (431)
T ss_dssp             CHHHHHHHHHHHHHCCC-CCTTC-----CCHHHHHHHHHHHHHSC--TTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEE
T ss_pred             CHHHHHHHHHHHhhccc-ccccc-----ccHHHHHHHHHHHHhCC--cccceeeecccccchHHHHHHHHHHhcCCccee
Confidence            69999999999987432 11111     22333445665554432  235789999999999999999875323 37899


Q ss_pred             EcCCcCcchHHHHHHhCC------------eEEEEecCCCC--C-----CCCCHHHHHHHHHHHH-hcCCCeeEEEEeCC
Q 009517          220 CPIPQYPLYSASIALHGG------------TLVPYYLDEAT--G-----WGLETSEVKKQLEAAK-AKGITVRALVVINP  279 (533)
Q Consensus       220 v~~p~~~~~~~~~~~~g~------------~~~~v~~~~~~--~-----~~ld~~~l~~~i~~~~-~~g~~~~~iil~~p  279 (533)
                      ....+|++........+.            ....++.....  .     ...+.+.++....... ....++.+|+++..
T Consensus       131 ~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi  210 (431)
T d1zoda1         131 GFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPI  210 (431)
T ss_dssp             EETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSE
T ss_pred             ecccccccccchhhcccccccccccCCcccCceeeeeecccccccccccchhhhhhHHHHHHHHHHhccccccceeeccc
Confidence            999999987665544321            12222221110  0     0012333333332221 12236777777755


Q ss_pred             CCCCcc-CCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCC
Q 009517          280 GNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGK  358 (533)
Q Consensus       280 ~NPtG~-~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~  358 (533)
                      +.-.|. .+|++.+++|.++|++||+++|+||++++|...|.  +.....  .++   .||     +.+++|.++  .|+
T Consensus       211 ~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~--~~~~~~--~gv---~PD-----i~~~gK~l~--gG~  276 (431)
T d1zoda1         211 LSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGT--MFACQR--DGV---TPD-----ILTLSKTLG--AGL  276 (431)
T ss_dssp             ETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--SSTHHH--HTC---CCS-----EEEECHHHH--TTS
T ss_pred             cccCCccCCCHHHHHHHHHHHHhcCceEEecccccccccccc--cccccc--CCC---Ccc-----hhccccccc--ccc
Confidence            544555 67888999999999999999999999999766664  333222  223   688     667899995  489


Q ss_pred             eeEEEEEecCCHHHHHHHHHhh---hccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 009517          359 RGGYMEVTGFSAEVREQIYKVA---SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAF--  433 (533)
Q Consensus       359 riG~v~~~~~~~~~~~~l~~~~---~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L--  433 (533)
                      .++.+++   .++++.......   ..|++.++++++++.+.|+.           .+ .+...++..+..+++.+.|  
T Consensus       277 p~~av~~---~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~l~~-----------i~-~~~~~~~~~~~g~~l~~~l~~  341 (431)
T d1zoda1         277 PLAAIVT---SAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDV-----------VQ-RDGLVARANVMGDRLRRGLLD  341 (431)
T ss_dssp             SCEEEEE---CHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHH-----------HH-HTTHHHHHHHHHHHHHHHHHH
T ss_pred             ccceeee---eecchhhhhcccccccCCCCCCcchHHHHHHHHHH-----------hh-hhhhhHHHHHHHHHHhhhhhh
Confidence            9999988   888887765532   36788999999999888741           11 1233334444444444433  


Q ss_pred             --hcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCC-hHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--C
Q 009517          434 --NSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVP-DAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--P  508 (533)
Q Consensus       434 --~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~  508 (533)
                        .+.+-+.-++..|.|+.+- +..+...     ....+. ...+. +.+.++|+.+..-.   .....+.||+++.  +
T Consensus       342 ~~~~~~~i~~vrG~Glm~~ie-~~~~~~~-----~~~~~~~~~~i~-~~~~~~Gl~~~~~~---~~~~~~~i~l~Ppl~i  411 (431)
T d1zoda1         342 LMERFDCIGDVRGRGLLLGVE-IVKDRRT-----KEPADGLGAKIT-RECMNLGLSMNIVQ---LPGMGGVFRIAPPLTV  411 (431)
T ss_dssp             HHHHCTTEEEEEEETTEEEEE-EEEETTT-----TEECTTHHHHHH-HHHHHTTEECCEEC---CTTSCCEEEECCCTTC
T ss_pred             hhhcCCCeEEEeecceEEEEE-EecCCcc-----cCccHHHHHHHH-HHHHHhCcccCeee---ecCCCCEEEEECCCCC
Confidence              3445566677777765431 1100000     000011 12233 44556888632100   0223348999985  8


Q ss_pred             CcCcHHHHHHHHHHHHHHH
Q 009517          509 QEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       509 ~~e~i~~~~~~l~~~l~~~  527 (533)
                      ++++|++++++|++++++.
T Consensus       412 t~~eid~~~~~l~~al~~v  430 (431)
T d1zoda1         412 SEDEIDLGLSLLGQAIERA  430 (431)
T ss_dssp             CHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999875

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.85  E-value=4.4e-20  Score=185.69  Aligned_cols=319  Identities=15%  Similarity=0.184  Sum_probs=200.7

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCC----CcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHh---ccC
Q 009517          141 SADSIERAWQILDQIPGRATGAYSH----SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL---IRS  213 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~----~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l---~~~  213 (533)
                      |+.|++++.+.+.+...+....|..    ..-+.+.|+++|++++      +++++|++++|+++++..++..+   ...
T Consensus        14 p~~v~ea~~~~~~~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~~------~~~~~i~~~~~~T~~l~~~~~~~~~~~~~   87 (376)
T d1eg5a_          14 DDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLG------VSPSEIFFTSCATESINWILKTVAETFEK   87 (376)
T ss_dssp             CHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHT------SCGGGEEEESCHHHHHHHHHHHHHHHTTT
T ss_pred             CHHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHHHHHHHHcC------CCCCcEEEECCHHHHHHhhhhcccccccc
Confidence            7899999998887632211111111    1113456788888876      77899999999999999988653   225


Q ss_pred             CCCeEEEcCCcCcchHHHHH---HhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHH
Q 009517          214 ENDGILCPIPQYPLYSASIA---LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE  290 (533)
Q Consensus       214 ~gd~Vlv~~p~~~~~~~~~~---~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~  290 (533)
                      +|+.|++....|+.+...++   ..|.+++.+|++.  ++.+|+++++++|++      ++++|++++++|+||...+  
T Consensus        88 ~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~~--~~~id~~~l~~~i~~------~t~lv~is~v~~~tG~~~~--  157 (376)
T d1eg5a_          88 RKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDS--RGVVKLEELEKLVDE------DTFLVSIMAANNEVGTIQP--  157 (376)
T ss_dssp             TCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCT--TSCBCHHHHHHHCCT------TEEEEEEESBCTTTCBBCC--
T ss_pred             cCcccccccccchhhHHHHHHHHhcCCEEEEEcCCC--CCeECHHHHHHhcCC------CceEEEEECCccccceeee--
Confidence            67888888888887765554   4599999999885  458999999999987      8999999999999999999  


Q ss_pred             HHHHHHHHHHHc--CCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecC
Q 009517          291 NQRAIVDFCKKE--GLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGF  368 (533)
Q Consensus       291 ~l~~i~~l~~~~--~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~  368 (533)
                       ++++.++++.+  ++++++|.++.-    |..+ ..+    .++   ..|   +++.|++|.+ |.+|..+.|+.    
T Consensus       158 -~~~i~~~~~~~~~~~~~~vD~~q~~----g~~~-~d~----~~~---~~D---~~~~s~~K~~-gp~G~~~l~~~----  216 (376)
T d1eg5a_         158 -VEDVTRIVKKKNKETLVHVDAVQTI----GKIP-FSL----EKL---EVD---YASFSAHKFH-GPKGVGITYIR----  216 (376)
T ss_dssp             -HHHHHHHHHHHCTTCEEEEECTTTT----TTSC-CCC----TTT---CCS---EEEEEGGGGT-SCTTCEEEEEC----
T ss_pred             -ehhhhhhhhhcccCceeEEEeeecc----cccc-ccc----ccc---Ccc---ceecccceee-cCCCceeEEec----
Confidence             56666666444  899999998864    2211 111    111   234   7799999997 88998887763    


Q ss_pred             CHHHHHHHHHhh-------h-ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Q 009517          369 SAEVREQIYKVA-------S-VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGIT  440 (533)
Q Consensus       369 ~~~~~~~l~~~~-------~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~  440 (533)
                       ++.  .+....       . .....+......+.....          ..................++.+.|... ...
T Consensus       217 -~~~--~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~  282 (376)
T d1eg5a_         217 -KGV--PIRPLIHGGGQERGLRSGTQNVPGIVGAARAME----------IAVEELSEAAKHMEKLRSKLVSGLMNL-GAH  282 (376)
T ss_dssp             -TTS--CCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHH----------HHHHTHHHHHHHHHHHHHHHHHHHHTT-TCE
T ss_pred             -cCc--ccCCcccCCCCcccccCCcccchhhhhHHHHhh----------ccccchhhhhhhhhhhhhhhccccccc-ccc
Confidence             221  111111       1 112223344333333221          111222334444555666778888776 322


Q ss_pred             EecCC----ceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCC----------------CCc
Q 009517          441 CNKAE----GAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVP----------------GTW  500 (533)
Q Consensus       441 ~~~~~----gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~----------------g~~  500 (533)
                      .+.+.    .....+   .++.          . .... +...|.++||.+++|..+....                ..+
T Consensus       283 ~~~~~~~~~~~~~~~---~~~~----------~-~~~~-~~~~L~~~gI~vr~G~~c~~~~~~~~~~l~~~gi~~~~~~~  347 (376)
T d1eg5a_         283 IITPLEISLPNTLSV---SFPN----------I-RGST-LQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQG  347 (376)
T ss_dssp             ECSCTTSBCTTEEEE---ECTT----------C-CHHH-HHHHHHHTTEECBC------------CHHHHTTCCHHHHHH
T ss_pred             ccccccccccceeee---ccCC----------C-CHHH-HHHHHhhCCeEEeCcchhcCCccchhHHHHHcCCCcccCCC
Confidence            22221    111221   1111          1 1222 3466788999999887653110                123


Q ss_pred             eEEEEec--CCcCcHHHHHHHHHHHHH
Q 009517          501 HFRCTIL--PQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       501 ~iRis~~--~~~e~i~~~~~~l~~~l~  525 (533)
                      +||||++  .|++||+.+++.|++++.
T Consensus       348 ~iRiS~~~ynt~edid~l~~~L~~iv~  374 (376)
T d1eg5a_         348 AIRISLCKYNTEEEVDYFLKKIEEILS  374 (376)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             EEEEecCCCCCHHHHHHHHHHHHHHHh
Confidence            7999997  689999999999999876

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=99.85  E-value=1.6e-20  Score=184.95  Aligned_cols=324  Identities=13%  Similarity=0.104  Sum_probs=200.5

Q ss_pred             cCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCC
Q 009517          137 QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND  216 (533)
Q Consensus       137 ~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd  216 (533)
                      +.+.+|+|++++.++...    ....|.+.....++|+.+|++++      . ...+++|+||++|+..++..++ .+++
T Consensus        12 ~~g~~P~v~~A~~~a~~~----~~~~~~~~~~~~~l~~~la~~~g------~-~~~v~f~~sGt~An~~a~~~~~-~~~~   79 (345)
T d1v72a1          12 IAGASPEVAQALVKHSSG----QAGPYGTDELTAQVKRKFCEIFE------R-DVEVFLVPTGTAANALCLSAMT-PPWG   79 (345)
T ss_dssp             GCCCCHHHHHHHHHTTSS----CCCSTTCSHHHHHHHHHHHHHHT------S-CCEEEEESCHHHHHHHHHHTSC-CTTE
T ss_pred             CCCCCHHHHHHHHHHhcc----CccccCCCHHHHHHHHHHHHHHC------C-CcEEEECCchHHHHHHHHHHHH-hcCC
Confidence            444578999998775443    34567777778899999999985      2 2468999999999999999988 6777


Q ss_pred             eEEEcCCcCcchH---HHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeE-EEEeCCCCCCccCCCHHHH
Q 009517          217 GILCPIPQYPLYS---ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRA-LVVINPGNPTGQVLAEENQ  292 (533)
Q Consensus       217 ~Vlv~~p~~~~~~---~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~-iil~~p~NPtG~~~s~~~l  292 (533)
                      .+++....+..+.   ......+..+..++..  .+...+++.+++.+.........+.. ++...+.|++|...+.+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (345)
T d1v72a1          80 NIYCHPASHINNDECGAPEFFSNGAKLMTVDG--PAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEI  157 (345)
T ss_dssp             EEEECTTSHHHHSSTTHHHHHTTSCEEEECCC--GGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHH
T ss_pred             ccccccccceeeechhhHHHhcCccccccccc--ccccccHHHhhhhhcccccccccccceeeeeeccccccccccchhh
Confidence            7777665544332   2334456666555443  24468999999998764222223444 4444778899999999999


Q ss_pred             HHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHH
Q 009517          293 RAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEV  372 (533)
Q Consensus       293 ~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~  372 (533)
                      +++.++|++||+++++|+++.+..+.....  ++.....     ..+.. ....+..|..  +.+.+.  ...  .....
T Consensus       158 ~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~--~~~~~~~-----~~~~~-~~~~~~~~~~--~~~~~~--~~~--~~~~~  223 (345)
T d1v72a1         158 EAIGDVCKSSSLGLHMDGSRFANALVSLGC--SPAEMTW-----KAGVD-ALSFGATKNG--VLAAEA--IVL--FNTSL  223 (345)
T ss_dssp             HHHHHHHHHTTCEEEEEETTHHHHHHHHTC--CTTTTTG-----GGTCC-EEEECCGGGT--CSSCEE--EEE--SSGGG
T ss_pred             hhHHHHHHhcCceeeecccccceecccccc--CHHHhhc-----ccccc-ccccCccccc--cccccc--ccc--chhhh
Confidence            999999999999999999998754432211  1111000     12211 2233444432  122222  222  13333


Q ss_pred             HHHHHHhhh-ccccCChHHHH--HHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeE
Q 009517          373 REQIYKVAS-VNLCSNISGQI--LASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMY  449 (533)
Q Consensus       373 ~~~l~~~~~-~~~~~~~~~q~--a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~  449 (533)
                      ......... .....+.....  ++...+.+            ...........++...+.+.|.+++|+.+..|.++.+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~~~ni  291 (345)
T d1v72a1         224 ATEMSYRRKRAGHLSSKMRFLSAQIDAYLTD------------DLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANI  291 (345)
T ss_dssp             HHHHHHHHHHTTCCCSSTHHHHHHHHHHTST------------THHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSE
T ss_pred             hhhccccccccccccchhhHHhhhhHHHHHH------------hhhhhhccchhhHHHHHHHHHHhcCCcEeccCCCccE
Confidence            333222222 22222222222  22223321            1123334445566677888899999999888877777


Q ss_pred             EecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHHHHHHH
Q 009517          450 LFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVTRLTDF  523 (533)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~~l~~~  523 (533)
                      +|++++  .              . .+ +.|.++||.+.++     ..+.+.+||+++  +|+|+|+.++++|+++
T Consensus       292 v~~~~~--~--------------~-~~-~~L~~~gi~v~~~-----~~~~~~lR~~~~~~~T~edid~~le~lr~a  344 (345)
T d1v72a1         292 LFCRLD--S--------------A-MI-DALLKAGFGFYHD-----RWGPNVVRFVTSFATTAEDVDHLLNQVRLA  344 (345)
T ss_dssp             EEEEEC--H--------------H-HH-HHHHHTTCBCBCS-----SSSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred             EEEEcC--H--------------H-HH-HHHHHcCCCcccc-----CCCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            886553  2              1 23 3455679887543     223458999995  7899999999999874

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.83  E-value=1.3e-20  Score=193.76  Aligned_cols=364  Identities=13%  Similarity=0.090  Sum_probs=221.1

Q ss_pred             hHHHHHHHHHHhhcCCCCCCccceeeccCCCCcCCCCCCchHHHHHHhhcCCCCCCCcccccCCCCHHHHHHHHHHHhcC
Q 009517           76 IVSIAQRLQQELQTNPGSHSFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSILDRSETQGLFSADSIERAWQILDQI  155 (533)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~p~~v~~~~~~~~~~~  155 (533)
                      .+.++++...++.||++      +||+..|....                      ..+++    ++++++++.+++...
T Consensus        38 ~~~~g~G~~l~D~dG~~------ylD~~~g~~~~----------------------~lGh~----~p~v~~ai~~q~~~~   85 (461)
T d1ohwa_          38 NYEESRGNYLVDVDGNR------MLDLYSQISSI----------------------PIGYS----HPALVKLVQQPQNVS   85 (461)
T ss_dssp             CTTTCBBTEEEBTTSCE------EEESSHHHHTC----------------------SSCBT----CHHHHHHHHCGGGHH
T ss_pred             EEEEeecCEEEECCCCE------EEEcccCHHHH----------------------hhcCC----cHHHHHHHHHHHhhh
Confidence            55666666666667777      78876553221                      11111    588999888776542


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc-----------------------
Q 009517          156 PGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-----------------------  212 (533)
Q Consensus       156 ~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-----------------------  212 (533)
                      .......+. ......+.+.+++.+....+  ...++++++++|++|++.+++.++.                       
T Consensus        86 ~~~~~~~~~-~~~~~~~a~~lae~l~~~~~--~~~~~v~f~~sGseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~  162 (461)
T d1ohwa_          86 TFINRPALG-ILPPENFVEKLRESLLSVAP--KGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMIN  162 (461)
T ss_dssp             HHHCCCCTT-TSCBTTHHHHHHHTGGGGCC--TTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTT
T ss_pred             hhccccccc-ccchHHHHHHHHHHHHhhhc--cCcceeeeecchhhhhHHHHHHHHHHhhhcccCcccccchhhhhhhhc
Confidence            100001111 11133456667776654322  3456899999999999999987631                       


Q ss_pred             ----CCCCeEEEcCCcCcchHHHHHHhCCe--------------EEEEecCCCC-CC---------CCCHHHHHHHHHHH
Q 009517          213 ----SENDGILCPIPQYPLYSASIALHGGT--------------LVPYYLDEAT-GW---------GLETSEVKKQLEAA  264 (533)
Q Consensus       213 ----~~gd~Vlv~~p~~~~~~~~~~~~g~~--------------~~~v~~~~~~-~~---------~ld~~~l~~~i~~~  264 (533)
                          .+..+|+....+|++....+......              ..+.+..... .+         ..+.+.+++.+...
T Consensus       163 ~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  242 (461)
T d1ohwa_         163 QAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKY  242 (461)
T ss_dssp             CTTTSCCCEEEEETTCCCCSSHHHHHTCCSCHHHHTTCCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCceEEEecCCcCCCCcccccccCCcccccccccccCCcccccccccccccccccccchhhhhhHHHHHHHHHHH
Confidence                12347999999999865544443211              1111110000 00         01345667766655


Q ss_pred             HhcCCCeeEEEEeCCCCCCcc-CCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEE
Q 009517          265 KAKGITVRALVVINPGNPTGQ-VLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLV  343 (533)
Q Consensus       265 ~~~g~~~~~iil~~p~NPtG~-~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi  343 (533)
                      .....++.+|+++..+...|. .++++.|++|.++|++||+++|+||++++|..+|.  +..+..+  .+. ..||    
T Consensus       243 ~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG~--~~~~e~~--gi~-~~PD----  313 (461)
T d1ohwa_         243 RKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGK--FWAHEHW--GLD-DPAD----  313 (461)
T ss_dssp             HHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTSS--SSGGGGG--CCS-SCCS----
T ss_pred             HhCCCccceeeeccccccccccCchhhHHHHHHHHHHhhCcceeccccccccccccc--ccccccc--ccc-cCch----
Confidence            444557888888877666665 67888899999999999999999999999877664  3332221  110 0367    


Q ss_pred             EEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHh-hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHH
Q 009517          344 SFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV-ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSL  422 (533)
Q Consensus       344 ~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~  422 (533)
                       +.+++|.++   |   |++..   ...+. ..... ...|++.++++++++.+.|+           ..+ .+.+.++.
T Consensus       314 -iv~~gK~l~---~---g~~~~---~~~~~-~~~~~~~~~T~~g~p~~~aaa~a~l~-----------~i~-~~~l~~~~  370 (461)
T d1ohwa_         314 -VMTFSKKMM---T---GGFFH---KEEFR-PNAPYRIFNTWLGDPSKNLLLAEVIN-----------IIK-REDLLSNA  370 (461)
T ss_dssp             -EEEECGGGS---S---EEEEE---CGGGS-CSSTTSSCCSCSSCHHHHHHHHHHHH-----------HHH-HTTHHHHH
T ss_pred             -hhhhhhccc---c---ccccc---ccccc-cccccccccccccccccchhhcccch-----------hhh-hhhHHHHH
Confidence             457899883   2   34433   22221 11112 23678899999999988884           222 13455556


Q ss_pred             HHHHHHHHHHHhcC----CC-ceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCC
Q 009517          423 ARRAKTLEDAFNSL----EG-ITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVP  497 (533)
Q Consensus       423 ~~~~~~l~~~L~~~----~g-~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~  497 (533)
                      +++.++|.+.|+++    |. +.-++..|.|+.+   +++...          ....++ ..+.++||++.+.       
T Consensus       371 ~~~g~~l~~~l~~l~~~~~~~i~~vrG~Gl~~~i---e~~~~~----------~~~~i~-~~~~~~Gll~~~~-------  429 (461)
T d1ohwa_         371 AHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSF---DTPDES----------IRNKLI-SIARNKGVMLGGC-------  429 (461)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTTCEEEEEETTEEEE---ECSSHH----------HHHHHH-HHHHHTTEECEEE-------
T ss_pred             HHHHHHHHHHHHHHHhhCCCceEEeeeeeEEEEE---EcCCHH----------HHHHHH-HHHHHCCeEEeeC-------
Confidence            66666666666653    33 5557777766543   333221          012333 4555689999862       


Q ss_pred             CCceEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 009517          498 GTWHFRCTIL--PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       498 g~~~iRis~~--~~~e~i~~~~~~l~~~l~~~  527 (533)
                      +.+.|||.+.  +++++|++++++|+++++++
T Consensus       430 ~~~~ir~~PpL~it~~eid~~~~~l~~~l~ef  461 (461)
T d1ohwa_         430 GDKSIRFRPTLVFRDHHAHLFLNIFSDILADF  461 (461)
T ss_dssp             TTTEEECCCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEeCCcCCCHHHHHHHHHHHHHHHhcC
Confidence            2348999874  89999999999999998763

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=99.82  E-value=1e-17  Score=165.83  Aligned_cols=214  Identities=13%  Similarity=0.139  Sum_probs=167.1

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHH----hCCeEEEEec
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL----HGGTLVPYYL  244 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~----~g~~~~~v~~  244 (533)
                      ...|.+.+|++.+        .+..+++++|+.|+..++..++ ++||+|+++...|.+....++.    .|.++..++.
T Consensus        61 ~~~LE~~la~LEg--------~~~a~~~~SGmaAi~~~l~~l~-~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~~d~  131 (392)
T d1gc0a_          61 LNLLEARMASLEG--------GEAGLALASGMGAITSTLWTLL-RPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDM  131 (392)
T ss_dssp             HHHHHHHHHHHHT--------CSEEEEESSHHHHHHHHHHHHC-CTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECT
T ss_pred             HHHHHHHHHHHhC--------CcceeehhhHHHHHHHHHHhhc-cCCCeeecccccchhhhhhhhhhhccCCcccccCCc
Confidence            5677777777754        4678889999999999999998 8999999999999987666544    5888887753


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcc
Q 009517          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (533)
Q Consensus       245 ~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~  324 (533)
                             -|++++++++++      ++++|++++|.|||..+.+   +++|+++|+++|+++++|..|..-.+.  +|  
T Consensus       132 -------~d~~~~~~ai~~------~t~lv~~Esp~NP~l~v~D---i~~i~~ia~~~g~~~vvDnT~atP~~~--~P--  191 (392)
T d1gc0a_         132 -------ADLQALEAAMTP------ATRVIYFESPANPNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQ--RP--  191 (392)
T ss_dssp             -------TCHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHC--CG--
T ss_pred             -------cCHHHHHHhCCC------CCeEEEecccccceeeecc---hHHHHHHHHhcCCEEEEecCccCcccc--Ch--
Confidence                   378999999987      8999999999999999999   999999999999999999999753321  11  


Q ss_pred             cHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHH--Hhhh-ccccCChHHHHHHHHHcCCC
Q 009517          325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY--KVAS-VNLCSNISGQILASLVMSPP  401 (533)
Q Consensus       325 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~--~~~~-~~~~~~~~~q~a~~~~L~~~  401 (533)
                          +  ++   ..|   |++.|.+|.++|-...-.|.+++   +.+.+.+++  ..+. .....++..++.+..-|+. 
T Consensus       192 ----l--~~---GaD---ivihS~TKyi~Ghsd~~~G~v~~---~~~~~~~~r~~~~~~~~G~~~~p~da~ll~rgl~T-  255 (392)
T d1gc0a_         192 ----L--EL---GAD---LVVHSATKYLSGHGDITAGIVVG---SQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKT-  255 (392)
T ss_dssp             ----G--GG---TCS---EEEEETTTTTTCSSSCCCEEEEE---CHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTT-
T ss_pred             ----H--Hh---CCC---EEEEecceeecCCcccccccccc---hhHHHHHHHHHHHHHccCCcCChhhHHHHHhcccc-
Confidence                1  11   245   88999999997654577888887   787776553  3333 4677788888888777642 


Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Q 009517          402 KVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGIT  440 (533)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~  440 (533)
                                   +..+.++..++...+.+.|++.|.++
T Consensus       256 -------------L~lRm~~~~~nA~~lA~~L~~hp~V~  281 (392)
T d1gc0a_         256 -------------LNLRMDRHCANAQVLAEFLARQPQVE  281 (392)
T ss_dssp             -------------HHHHHHHHHHHHHHHHHHHHTCTTEE
T ss_pred             -------------HHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence                         44555666778888999998876554

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=99.81  E-value=4.8e-17  Score=161.02  Aligned_cols=282  Identities=15%  Similarity=0.165  Sum_probs=199.7

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHH----HHHhCCeEEEEec
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS----IALHGGTLVPYYL  244 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~----~~~~g~~~~~v~~  244 (533)
                      ...|.+.+|++.+        .+..+++++|+.|+..++..++ ++||+|+++...|.+-...    +...|.++..++.
T Consensus        65 ~~~LE~~la~LEg--------g~~a~~~sSGmaAi~~~l~~ll-~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~~vd~  135 (397)
T d1y4ia1          65 TDALEKKLAVLER--------GEAGLATASGISAITTTLLTLC-QQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDA  135 (397)
T ss_dssp             HHHHHHHHHHHHT--------CSEEEEESSHHHHHHHHHHHHC-CTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECT
T ss_pred             HHHHHHHHHHHhC--------CccceeehHHHHHHHHHHhhcc-CCCCeeeeecccccccchhhhcccCCCceEeeccCC
Confidence            4556666666643        4567889999999999999998 8999999999999875543    4567999988763


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcc
Q 009517          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (533)
Q Consensus       245 ~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~  324 (533)
                      .       |++.++++|++      ++++|++++|.|||..+.+   +++|+++|+++|+++++|..+..-.+-  .|  
T Consensus       136 ~-------d~~~~~~~i~~------~Tklv~~Esp~NP~l~v~D---i~~i~~iA~~~gi~~vvDnT~atP~~~--~P--  195 (397)
T d1y4ia1         136 G-------KPEEIRAAMRP------ETKVVYIETPANPTLSLVD---IETVAGIAHQQGALLVVDNTFMSPYCQ--QP--  195 (397)
T ss_dssp             T-------SHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTC--CG--
T ss_pred             C-------CHHHHHHhcCC------CCcEEEecCCcccceeecc---cHHHHHHhhcCCceEEecCcccCcccC--cc--
Confidence            3       78999999977      8999999999999999998   999999999999999999998753221  11  


Q ss_pred             cHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHH--Hhhh-ccccCChHHHHHHHHHcCCC
Q 009517          325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY--KVAS-VNLCSNISGQILASLVMSPP  401 (533)
Q Consensus       325 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~--~~~~-~~~~~~~~~q~a~~~~L~~~  401 (533)
                       +     ++   ..|   |++.|++|.++|-...=.|.+++   +.+.+.+++  ..+. ...+.++..++.+..-|+. 
T Consensus       196 -l-----~~---GaD---ivihS~TKyi~Ghsdvl~G~v~~---~~~~~~~~r~~~~~~~~G~~l~p~~a~l~~rgl~T-  259 (397)
T d1y4ia1         196 -L-----QL---GAD---IVVHSVTKYINGHGDVIGGIIVG---KQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKT-  259 (397)
T ss_dssp             -G-----GG---TCS---EEEEETTTTTTCSSCCCCEEEEE---CHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTT-
T ss_pred             -h-----hc---CCC---EEEEehhhhcCCCcceeeeccCC---CHHHHHHHHHHHHHhCcCCcCCHHHHHHHHcCcCc-
Confidence             1     11   245   88999999997755577788877   777766543  3343 4667788888888777642 


Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEe-cC-----------------CceeEEecccCCCHHHHHH
Q 009517          402 KVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCN-KA-----------------EGAMYLFPRIQLPEKAIKA  463 (533)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~-----------------~gg~~~~~~~~~~~~~~~~  463 (533)
                                   +..+.++..++...+.+.|++.|.++.+ -|                 .||++.|- +..       
T Consensus       260 -------------L~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf~-~~~-------  318 (397)
T d1y4ia1         260 -------------LGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFE-IAG-------  318 (397)
T ss_dssp             -------------HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHCSSCCSEEEEE-ETT-------
T ss_pred             -------------HHHHHHHHHHHHHHHHHHHHhCCCcCeEeCCCCCCCccccccccccCCCCeEEEEE-ecC-------
Confidence                         4445566777888899999988766432 12                 36766652 321       


Q ss_pred             HHhcCCCChHHHHHHHHHccceEEEcCCCCCCC------------------------CCCceEEEEecCCcCcHHHHHHH
Q 009517          464 AEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQV------------------------PGTWHFRCTILPQEDKIPAIVTR  519 (533)
Q Consensus       464 ~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~------------------------~g~~~iRis~~~~~e~i~~~~~~  519 (533)
                              +.+.+.+.++.-.+ +..+..+|..                        -..+.||||+++  |+.+.+++.
T Consensus       319 --------~~~~~~~f~~~L~l-~~~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~liRlsvGl--Ed~~DLi~D  387 (397)
T d1y4ia1         319 --------GLEAGRRMINSVEL-CLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGL--EDPEDIIND  387 (397)
T ss_dssp             --------HHHHHHHHHHTCSS-SEECSCCSCSSCEEECTTTTTTSSSCHHHHHHTTCCTTEEEEECCS--SCHHHHHHH
T ss_pred             --------CHHHHHHHHHcCCc-cceeeccCcccceeeCccccccccCCHHHHHHcCCCcCEEEEEecc--CCHHHHHHH
Confidence                    12222344443332 2222222210                        023489999995  667888899


Q ss_pred             HHHHHHHH
Q 009517          520 LTDFHKNF  527 (533)
Q Consensus       520 l~~~l~~~  527 (533)
                      |++++++.
T Consensus       388 l~~AL~~a  395 (397)
T d1y4ia1         388 LEHAIRKA  395 (397)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            98888753

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=4.5e-19  Score=178.93  Aligned_cols=325  Identities=13%  Similarity=0.113  Sum_probs=207.3

Q ss_pred             cCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCC-CCEEEcCChHHHHHHHHHHhccCCC
Q 009517          137 QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADP-NDIFLTDGASPAVHMMMQLLIRSEN  215 (533)
Q Consensus       137 ~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~~~g  215 (533)
                      |..+|++|++++....       ..+-.  ....++.+.+.+.+.+.+|  ++. ..|+++.|++++++.++..++ .+|
T Consensus        27 P~~~~~~Vl~am~~~~-------i~HRs--~~f~~i~~ea~~~l~~llg--~~~~~~ii~~gsgT~a~~~~i~~l~-~~~   94 (388)
T d1h0ca_          27 PSNLPPRIMAAGGLQM-------IGSMS--KDMYQIMDEIKEGIQYVFQ--TRNPLTLVISGSGHCALEAALVNVL-EPG   94 (388)
T ss_dssp             CCCCCHHHHHHHTCCC-------CCTTS--HHHHHHHHHHHHHHHHHHT--CCCSEEEEESSCHHHHHHHHHHHHC-CSS
T ss_pred             CCCCCHHHHHHhCcCC-------CCCCC--HHHHHHHHHHHHHHHHHhC--CCCCcEEEEcCcHHHHHHHHHHHhh-ccC
Confidence            4455788877653211       11111  1133444444444444445  333 358889999999999999998 789


Q ss_pred             CeEEEcCCcCcchHH--HHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHH
Q 009517          216 DGILCPIPQYPLYSA--SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQR  293 (533)
Q Consensus       216 d~Vlv~~p~~~~~~~--~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~  293 (533)
                      +++++....+.....  .....+..+..+....  +..+|.+.+++.+...     +++++++++.+|.||++.+   ++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-----~~~~v~~~~~~n~tG~i~p---i~  164 (388)
T d1h0ca_          95 DSFLVGANGIWGQRAVDIGERIGARVHPMTKDP--GGHYTLQEVEEGLAQH-----KPVLLFLTHGESSTGVLQP---LD  164 (388)
T ss_dssp             CCEEECBSSHHHHHHHHHHHHHC--CBCCBCCT--TCCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CT
T ss_pred             CceeeecccceeeeeccccccccccccccccCC--ccccchHHHHHHhccC-----CcceEEEeeeeeccccccC---HH
Confidence            999998888775433  3444566666665554  3478999998888776     8999999999999999999   99


Q ss_pred             HHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHH
Q 009517          294 AIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVR  373 (533)
Q Consensus       294 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~  373 (533)
                      +|.++|+++|+++++|.+++-...    + .++    .++   .-|   +++.|..|.+.|.+|.  |+++.   .+..+
T Consensus       165 ~i~~~~~~~g~~~~vD~~qs~g~~----~-~d~----~~~---~~D---~~~~s~~K~~~gp~g~--~~~~~---~~~~~  224 (388)
T d1h0ca_         165 GFGELCHRYKCLLLVDSVASLGGT----P-LYM----DRQ---GID---ILYSGSQKALNAPPGT--SLISF---SDKAK  224 (388)
T ss_dssp             THHHHHHTTTCEEEEECTTTTTTS----C-CCT----TTT---TCS---EEEEESSSTTCCCTTC--EEEEE---CHHHH
T ss_pred             HHHHHhhcccccceeccccccccc----c-ccc----ccc---ccc---eecccccccccCCCce--EEEee---cHHHH
Confidence            999999999999999999875222    1 111    111   123   6678888988655554  55555   77766


Q ss_pred             HHHHHhh-----------------------h-ccccCChHHHHHHHHHcCCCCCCChhHHHHHH-HHHHHHHHHHHHHHH
Q 009517          374 EQIYKVA-----------------------S-VNLCSNISGQILASLVMSPPKVGDESYESYCA-ERDGILSSLARRAKT  428 (533)
Q Consensus       374 ~~l~~~~-----------------------~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  428 (533)
                      +.+....                       . ....++.....+...++.          ...+ .++.+.++.++..++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~----------~~~~~g~~~~~~~~~~l~~~  294 (388)
T d1h0ca_         225 KKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLA----------LIAEQGLENSWRQHREAAAY  294 (388)
T ss_dssp             HHHTTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHH----------HHHHHCHHHHHHHHHHHHHH
T ss_pred             HhhhhccccccccccccchhhhhhhhccccccccccccHHHHHHHHHHHH----------HHHHhccccccccccchhHH
Confidence            6553210                       0 112233334344444331          1111 246667777788888


Q ss_pred             HHHHHhcCCCceEecCC-----ceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEE
Q 009517          429 LEDAFNSLEGITCNKAE-----GAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFR  503 (533)
Q Consensus       429 l~~~L~~~~g~~~~~~~-----gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iR  503 (533)
                      +++.+.+. |+....++     .++. .  +.+|.+         + +..++...+++++||.+..|....   ..+.||
T Consensus       295 l~~~~~~~-g~~~~~~~~~~rs~~i~-~--~~~p~~---------~-~~~~~~~~L~~~~gI~v~~G~~~~---~~~~iR  357 (388)
T d1h0ca_         295 LHGRLQAL-GLQLFVKDPALRLPTVT-T--VAVPAG---------Y-DWRDIVSYVIDHFDIEIMGGLGPS---TGKVLR  357 (388)
T ss_dssp             HHHHHHHH-TCCBSSCSGGGBCTTEE-E--EECCTT---------C-CHHHHHHHHHHHHCEECEECCGGG---TTTEEE
T ss_pred             HHHHHhhc-CcccccCCHHHcCCeEE-E--EECCCC---------C-CHHHHHHHHHhcCCEEEeCCchhh---cCCEEE
Confidence            88888876 54433222     1222 2  223322         1 345566777788899999886432   223899


Q ss_pred             EE-ec--CCcCcHHHHHHHHHHHHHHHHHH
Q 009517          504 CT-IL--PQEDKIPAIVTRLTDFHKNFMDK  530 (533)
Q Consensus       504 is-~~--~~~e~i~~~~~~l~~~l~~~~~~  530 (533)
                      || ++  .+.++|++++++|+++++++.++
T Consensus       358 is~~g~~~t~edid~li~aL~~~L~~l~k~  387 (388)
T d1h0ca_         358 IGLLGCNATRENVDRVTEALRAALQHCPKK  387 (388)
T ss_dssp             EECCGGGCSHHHHHHHHHHHHHHHHHSCCC
T ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHHHhccc
Confidence            99 64  67889999999999999987654

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=99.80  E-value=2.6e-18  Score=177.53  Aligned_cols=330  Identities=17%  Similarity=0.182  Sum_probs=204.2

Q ss_pred             ccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCC-------eEEEcCCcCcchHHHH
Q 009517          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND-------GILCPIPQYPLYSASI  232 (533)
Q Consensus       160 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd-------~Vlv~~p~~~~~~~~~  232 (533)
                      ...|....+..+|+++++++++        .+.++++++|++|...+++.++ ++|+       .++...+.|..+....
T Consensus        68 d~~y~~~~~~~~le~~~a~l~g--------~~~~~~~~sGt~A~~~a~~~~~-~~g~~~~~~~~~~i~~~~h~~t~~~~~  138 (465)
T d1ax4a_          68 DEAYAGSRNYYDLKDKAKELFN--------YDYIIPAHQGRGAENILFPVLL-KYKQKEGKAKNPVFISNFHFDTTAAHV  138 (465)
T ss_dssp             CCCSSSCHHHHHHHHHHHHHHC--------CCEEEEESSHHHHHHHHHHHHH-HHHHHTTCCSSCEEEESSCCHHHHHHH
T ss_pred             hhhhccChHHHHHHHHHHHHHC--------CCEEEECCCcHHHHHHHHHHHH-HHHHhcCCCCCeEEeccchhhhhHHHH
Confidence            4568888889999999999974        5789999999999999999987 4433       3555665565666667


Q ss_pred             HHhCCeEEEEecC--------CCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCc-cCCCHHHHHHHHHHHHHcC
Q 009517          233 ALHGGTLVPYYLD--------EATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTG-QVLAEENQRAIVDFCKKEG  303 (533)
Q Consensus       233 ~~~g~~~~~v~~~--------~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG-~~~s~~~l~~i~~l~~~~~  303 (533)
                      ...|..++.+...        ....+.+|++.++++|++...  ..+.+++++.++|..| .+++.+++++|.++|++||
T Consensus       139 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g  216 (465)
T d1ax4a_         139 ELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGA--DNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHG  216 (465)
T ss_dssp             HHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCG--GGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHT
T ss_pred             HHcCCeeecccccccCCCCCCCCccCccCHHHHHHHHHhhcc--ccccceeeccccccCceecCCHHHHHHHHHHHHHcC
Confidence            7789888766432        123456899999999987521  1455666667777654 6789999999999999999


Q ss_pred             CEEEEccccccccc------cCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHH
Q 009517          304 LVLLADEVYQENVY------VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIY  377 (533)
Q Consensus       304 ~~lI~De~y~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~  377 (533)
                      +++|+|+++.....      .+.....+......++.. ..+   ++..|.+|.+   +|++.|+++.. ....+.....
T Consensus       217 ~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~d---~~s~s~~k~~---~~~~~g~l~~~-~~~~~~~~~~  288 (465)
T d1ax4a_         217 IFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYK-YAD---ALTMSAKKDP---LLNIGGLVAIR-DNEEIFTLAR  288 (465)
T ss_dssp             CCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGG-GCS---EEEEETTSTT---CCSSCEEEEES-SCHHHHHHHH
T ss_pred             CEEEEECcchhhhhcccccccccccccchhhhcccccc-ccc---eeEeecccCc---ccccceeEeec-chHHHHHhhh
Confidence            99999999863211      011111223333333321 123   3444556654   57888988872 1223333322


Q ss_pred             Hhh----h-c-cccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEe
Q 009517          378 KVA----S-V-NLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLF  451 (533)
Q Consensus       378 ~~~----~-~-~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~  451 (533)
                      ...    . . ..+.......++...+..            ...+...++..++.++|.+.|+++ |+.++.+.++++++
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~e------------~~~~~~~~~~~~~~~~l~~~L~~~-g~~~v~~~~~~~~~  355 (465)
T d1ax4a_         289 QRCVPMEGFVTYGGLAGRDMAAMVQGLEE------------GTEEEYLHYRIGQVKYLGDRLREA-GIPIQYPTGGHAVF  355 (465)
T ss_dssp             HHHHHHTCSTTTTTCCHHHHHHHHHHHHH------------TTCHHHHHHHHHHHHHHHHHHHHT-TCCBCSSCCSSEEE
T ss_pred             ccccccccCCCcchhhHHHHHHHhhhhHH------------hhhHHHHHHHHHHHHHHHHHHHhh-cCccccCCCcceee
Confidence            211    1 1 112222222222222210            001223344455677899999998 88888888888777


Q ss_pred             cccCC--CHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCC--------C--CCCCCceEEEEec---CCcCcHHHH
Q 009517          452 PRIQL--PEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGF--------G--QVPGTWHFRCTIL---PQEDKIPAI  516 (533)
Q Consensus       452 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f--------~--~~~g~~~iRis~~---~~~e~i~~~  516 (533)
                      .+...  +..     ...+ .....+..+++.+.||...+....        +  .......+|+++.   .|+|+|+++
T Consensus       356 ~~~~~~~~~~-----~~~~-~~~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~~~~~~~~vRlalP~~~~T~eeiD~v  429 (465)
T d1ax4a_         356 VDCKKLVPQI-----PGDQ-FPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYI  429 (465)
T ss_dssp             EESTTTCTTS-----CGGG-CHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHH
T ss_pred             eehhhhcCCC-----cccc-chhHHHHHHHHHhcCceeccccccccccccccCCccCCCCCceEEeCCCCCCCHHHHHHH
Confidence            55431  110     0000 112344567778889876542211        0  0112237999863   588999999


Q ss_pred             HHHHHHHHHHH
Q 009517          517 VTRLTDFHKNF  527 (533)
Q Consensus       517 ~~~l~~~l~~~  527 (533)
                      +++|++++++.
T Consensus       430 v~~l~~v~~~~  440 (465)
T d1ax4a_         430 ADALIGLKEKF  440 (465)
T ss_dssp             HHHHHTTHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.79  E-value=2.6e-16  Score=155.91  Aligned_cols=215  Identities=14%  Similarity=0.147  Sum_probs=164.0

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHH----HhCCeEEEEec
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA----LHGGTLVPYYL  244 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~----~~g~~~~~v~~  244 (533)
                      ...|.+.+|++.+        .+..+++++|+.|+..++..++ ++||.|++....|.+....+.    ..|.++..++.
T Consensus        69 ~~~LE~~la~LEg--------g~~a~~~sSGMaAi~~~l~~l~-~~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~~~~  139 (398)
T d1qgna_          69 TVVLEEKISALEG--------AESTLLMASGMCASTVMLLALV-PAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDP  139 (398)
T ss_dssp             HHHHHHHHHHHHT--------CSEEEEESCHHHHHHHHHHHHS-CSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECS
T ss_pred             HHHHHHHHHHHhC--------CceEEEecCcchHHHHHHhhcc-cccccccccccccchhhhhhcccccccccccccccc
Confidence            4567777777653        4678999999999999999998 899999999999988665544    35777777753


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcc
Q 009517          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (533)
Q Consensus       245 ~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~  324 (533)
                             .+.+..++.+...     ++++|++++|.|||..+.+   +++|+++|+++|+++|+|..+..-.+-  .|  
T Consensus       140 -------~~~~~~~~~~~~~-----~t~~v~~EspsNP~l~v~D---i~~ia~ia~~~g~~~vVDnT~atP~~~--~P--  200 (398)
T d1qgna_         140 -------ADVGALELALNQK-----KVNLFFTESPTNPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLNQ--KA--  200 (398)
T ss_dssp             -------SCHHHHHHHHHHS-----CEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTC--CT--
T ss_pred             -------cchhhhhhhhccc-----cceEEEccCccccccccch---HHHHHHHHhhcCCEEEecceeeccccC--Cc--
Confidence                   2455555544332     8999999999999999999   999999999999999999999653221  11  


Q ss_pred             cHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCC
Q 009517          325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKV  403 (533)
Q Consensus       325 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~  403 (533)
                          +  ++   ..|   |++.|++|.++|-...-.|.+..   +++++..+..... .....++..+..+..-|+    
T Consensus       201 ----l--~~---GaD---iVihS~TKy~~Ghsdv~~G~v~~---~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~----  261 (398)
T d1qgna_         201 ----L--AL---GAD---LVLHSATKFLGGHNDVLAGCISG---PLKLVSEIRNLHHILGGALNPNAAYLIIRGMK----  261 (398)
T ss_dssp             ----T--TT---TCS---EEEECTTTTTTCSSSCCCEEEEE---CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGG----
T ss_pred             ----h--hh---CCC---EEEEechhhcCcccceeehhhcc---hhhhhhhhhhhcccCCCcCCHHHHHHHHhcch----
Confidence                1  11   245   88999999997655566787776   8888888877765 556778888888777664    


Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Q 009517          404 GDESYESYCAERDGILSSLARRAKTLEDAFNSLEGIT  440 (533)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~  440 (533)
                                .+..+.++..++...+.+.|++.|.++
T Consensus       262 ----------TL~lRm~~~~~nA~~lA~~L~~hp~V~  288 (398)
T d1qgna_         262 ----------TLHLRVQQQNSTALRMAEILEAHPKVR  288 (398)
T ss_dssp             ----------GHHHHHHHHHHHHHHHHHHHHTCTTEE
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence                      245556667788888999999876654

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=8.5e-17  Score=158.90  Aligned_cols=215  Identities=13%  Similarity=0.139  Sum_probs=163.7

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHH----hCCeEEEEec
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL----HGGTLVPYYL  244 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~----~g~~~~~v~~  244 (533)
                      ...|.+.+|++-+        .+..+++++|+.|+..++..++ ++||.|+++...|.+....+..    .|..+..+. 
T Consensus        52 ~~~le~~la~LEg--------g~~a~~~sSGMaAi~~~l~~l~-~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~d-  121 (384)
T d1cs1a_          52 RDVVQRALAELEG--------GAGAVLTNTGMSAIHLVTTVFL-KPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVD-  121 (384)
T ss_dssp             HHHHHHHHHHHHT--------CSEEEEESSHHHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEEC-
T ss_pred             HHHHHHHHHHHhC--------CCceEEecChHHHHHHHHhhcc-cccceecccccccchhhhhhhhhhccccccccccc-
Confidence            5667777777753        4678999999999999999998 8999999999999876444433    466666554 


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcc
Q 009517          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (533)
Q Consensus       245 ~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~  324 (533)
                            ..|.+.+++++++      ++++|++++|.|||..+.+   +++|+++|+++|+++|+|..+..-.+.  .|  
T Consensus       122 ------~~d~~~~~~~~~~------~t~~v~~EspsNP~l~v~D---i~~i~~ia~~~g~~~vVDNT~atP~~~--~P--  182 (384)
T d1cs1a_         122 ------QGDEQALRAALAE------KPKLVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPALQ--NP--  182 (384)
T ss_dssp             ------TTCHHHHHHHHHT------CCSEEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTC--CG--
T ss_pred             ------CCCHHHHHhhccc------cccEEEEeccccccceecc---HHHHhhhhhhcCcEEEEeccccCcccc--cc--
Confidence                  2378999999987      8999999999999999999   999999999999999999999543221  11  


Q ss_pred             cHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCC
Q 009517          325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKV  403 (533)
Q Consensus       325 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~  403 (533)
                          +  ++   ..|   |++.|.+|.++|-...=.|.++.  .++++.+.+..... .....++..++.+..-|+.   
T Consensus       183 ----l--~~---GaD---iVvhS~TKyi~Ghsdv~~G~vv~--~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgL~T---  245 (384)
T d1cs1a_         183 ----L--AL---GAD---LVLHSCTKYLNGHSDVVAGVVIA--KDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRT---  245 (384)
T ss_dssp             ----G--GG---TCS---EEEEETTTTTTCSSCCCCEEEEE--SSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTT---
T ss_pred             ----c--cc---CCC---EEEEccccccccCCCcccccccC--CchhhhhhhhhhhhhhhhccccccHHHHhhccch---
Confidence                1  11   245   88999999997654476787776  36666666665554 5567788888887777642   


Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Q 009517          404 GDESYESYCAERDGILSSLARRAKTLEDAFNSLEGIT  440 (533)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~  440 (533)
                                 +....++..++...+.+.|++.|.+.
T Consensus       246 -----------L~lRm~~~~~nA~~lA~~L~~hp~V~  271 (384)
T d1cs1a_         246 -----------LVPRMELAQRNAQAIVKYLQTQPLVK  271 (384)
T ss_dssp             -----------HHHHHHHHHHHHHHHHHHHTTCTTEE
T ss_pred             -----------hHHHHHHHHHHHHHHHHhcccCCcee
Confidence                       44455666778888999999876654

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.79  E-value=6.2e-17  Score=159.88  Aligned_cols=214  Identities=14%  Similarity=0.157  Sum_probs=162.9

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHH----hCCeEEEEec
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL----HGGTLVPYYL  244 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~----~g~~~~~v~~  244 (533)
                      ...|.+.+|.+-+        .+..+++++|+.|+..+ ..++ ++||.|++..+.|.+....++.    .|.++..+..
T Consensus        51 ~~~le~~la~LE~--------~~~a~~fsSGMaAisal-l~ll-~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~  120 (380)
T d1ibja_          51 RDALESLLAKLDK--------ADRAFCFTSGMAALSAV-THLI-KNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNT  120 (380)
T ss_dssp             HHHHHHHHHHHHT--------CSEEEEESSHHHHHHHH-HTTS-CTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECT
T ss_pred             HHHHHHHHHHHcC--------CceEEehhhHHHHHHHH-HHhh-CCCCEEEEEecccccccchhhhhhccccccccccCc
Confidence            4567777777653        45678899999999754 4566 7999999999999987766654    5777777653


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcc
Q 009517          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (533)
Q Consensus       245 ~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~  324 (533)
                             .|.+++++++++      ++++|+++.|.|||..+.+   +++|+++|+++|+++|+|..+..-.+.  .|  
T Consensus       121 -------~~~~~~~~ai~~------~t~li~~EtpsNP~l~v~D---i~~i~~iA~~~g~~~vVDnT~atP~~~--~P--  180 (380)
T d1ibja_         121 -------TKLDEVAAAIGP------QTKLVWLESPTNPRQQISD---IRKISEMAHAQGALVLVDNSIMSPVLS--RP--  180 (380)
T ss_dssp             -------TSHHHHHHHCCS------SEEEEEECSSCTTTCCCCC---HHHHHHHHHTTTCEEEEECTTTCTTTC--CG--
T ss_pred             -------chHHHHHHHhcc------CccEEEecccccccccccc---HHHHHHHHHHcCCeEEeeccccccccc--cc--
Confidence                   378999998876      8999999999999999999   999999999999999999999753321  11  


Q ss_pred             cHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCC
Q 009517          325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKV  403 (533)
Q Consensus       325 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~  403 (533)
                          +  ++   ..|   |++.|++|.++|-...-.|.++.  .+.++.+.+..... .....++..+..+..-|+.   
T Consensus       181 ----l--~~---GaD---iVvhS~TKyi~GhsDv~~G~v~~--~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~T---  243 (380)
T d1ibja_         181 ----L--EL---GAD---IVMHSATKFIAGHSDVMAGVLAV--KGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKT---  243 (380)
T ss_dssp             ----G--GT---TCS---EEEEETTTTTTCSSCCCCEEEEE--CSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHHTT---
T ss_pred             ----c--cc---CCC---EEEecccceeccccCcccccccc--chhhHHHHHHhhccccCCcCCHHHHHHHHhcchh---
Confidence                1  11   245   88999999997755567888776  35677777776655 5567788888888777742   


Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Q 009517          404 GDESYESYCAERDGILSSLARRAKTLEDAFNSLEGIT  440 (533)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~  440 (533)
                                 +..+.++..++...+.+.|++.|.++
T Consensus       244 -----------l~lRm~~~~~nA~~lA~~L~~hp~V~  269 (380)
T d1ibja_         244 -----------MALRIEKQQENARKIAMYLSSHPRVK  269 (380)
T ss_dssp             -----------HHHHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred             -----------hhhhHHHHHHHHHHHHHHHHhCCCee
Confidence                       45556667788888999999876544

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=99.78  E-value=2.3e-17  Score=168.89  Aligned_cols=327  Identities=15%  Similarity=0.131  Sum_probs=209.6

Q ss_pred             ccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeE
Q 009517          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTL  239 (533)
Q Consensus       160 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~  239 (533)
                      ...|.......+|.+.+|++++        .+.++++++|+.|+.+++++++ ++||+|+.... |......+...|+.+
T Consensus        68 Dd~Y~~dpt~~~lE~~~a~l~G--------~e~al~~~SGt~An~~a~~~l~-~~Gd~Vi~~~~-f~~~~~~i~~~g~~~  137 (456)
T d1c7ga_          68 DEAYAGSENFYHLEKTVKELFG--------FKHIVPTHQGRGAENLLSQLAI-KPGQYVAGNMY-FTTTRFHQEKNGATF  137 (456)
T ss_dssp             CCCSSSCHHHHHHHHHHHHHHC--------CSEEEEESSHHHHHHHHHHHHC-CTTEEEEESSC-CHHHHHHHHHTTEEE
T ss_pred             chhccCCchHHHHHHHHHHHhC--------CCeEEECCCHHHHHHHHHHHhc-CCCCeEecCcc-hHHHHHHHHHcCcee
Confidence            3468888888999999999975        5678999999999999999998 89998876554 444555567778888


Q ss_pred             EEEecCC--------CCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCC-ccCCCHHHHHHHHHHHHHcCCEEEEcc
Q 009517          240 VPYYLDE--------ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT-GQVLAEENQRAIVDFCKKEGLVLLADE  310 (533)
Q Consensus       240 ~~v~~~~--------~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPt-G~~~s~~~l~~i~~l~~~~~~~lI~De  310 (533)
                      +.+..+.        ...+.+|++.|++.|++...  ..+.++++++++|+. |.+++.+++++|.++|++||+.++.|+
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~--~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~  215 (456)
T d1c7ga_         138 VDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGA--ENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDA  215 (456)
T ss_dssp             EECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCG--GGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred             eeccccccccccccCCccccCCHHHHHHHhhhcCC--ccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEc
Confidence            7665432        12456899999999998522  156788899999976 678999999999999999999999999


Q ss_pred             cccccc--c----cCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh---
Q 009517          311 VYQENV--Y----VPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS---  381 (533)
Q Consensus       311 ~y~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~---  381 (533)
                      +.....  +    .......++..+..+++. .-|   ++..|++|.+ +  +-..|+++.  .++++.++++....   
T Consensus       216 a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~-~ad---~~s~s~~K~~-~--~~~GG~i~~--~~~~l~~~~r~~~~~~~  286 (456)
T d1c7ga_         216 TRCVENAYFIKEQEAGYENVSIKDIVHEMFS-YAD---GCTMSGKKDC-L--VNIGGFLCM--NDEEMFSAAKELVVVYE  286 (456)
T ss_dssp             TTHHHHHHHHHHHSTTCTTSCHHHHHHHHHT-TCS---EEEEETTTTT-C--CSSCEEEEE--SCHHHHHHHHHHHHHHT
T ss_pred             chhhcchhhhcccccccCCCChhhhcccccc-ccc---cEEEeccccc-c--ccceeEEEc--CCHHHHHHHHHhccccC
Confidence            864210  0    011122344454444422 234   4566899987 4  223467766  36777777655431   


Q ss_pred             --c-cccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCceeEEecccC--C
Q 009517          382 --V-NLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQ--L  456 (533)
Q Consensus       382 --~-~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~gg~~~~~~~~--~  456 (533)
                        . ....+.....++...+..          ..  .....++-.++.++|.+.|.+. |+.++.|.++...+++..  +
T Consensus       287 g~~~~g~~~~~~~~a~a~~l~e----------~~--~~~~l~~r~~~~~~L~e~L~~~-g~~vv~p~g~~~v~vda~~~~  353 (456)
T d1c7ga_         287 GMPSYGGLAGRDMEAMAIGLRE----------AM--QYEYIEHRVKQVRYLGDKLREA-GVPIVEPTGGHAVFLDARRFC  353 (456)
T ss_dssp             CCTTTTTCCHHHHHHHHHHHHH----------HT--CHHHHHHHHHHHHHHHHHHHHT-TCCBCSSCCSSEEEEEHHHHC
T ss_pred             CCcccchhhHHHHHHHHHHHHH----------hc--CHHHHHHHHHHHHHHHHHHHhc-cCCcccCCCCcceeEechhhc
Confidence              1 122222222332222210          00  0112222344557888999998 888888888877765422  1


Q ss_pred             CHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCC--CC--C------CCCceEEEEec---CCcCcHHHHHHHHHHH
Q 009517          457 PEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGF--GQ--V------PGTWHFRCTIL---PQEDKIPAIVTRLTDF  523 (533)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f--~~--~------~g~~~iRis~~---~~~e~i~~~~~~l~~~  523 (533)
                      |.-.     .. ......++..++.+.||...+...+  +.  .      +....+|+++.   .|+++|++++++|+++
T Consensus       354 ~~i~-----~~-~~~~~~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~~~~~~~e~vRLaip~~~~T~e~iD~Vae~i~~v  427 (456)
T d1c7ga_         354 PHLT-----QD-QFPAQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIKL  427 (456)
T ss_dssp             TTSC-----GG-GCHHHHHHHHHHHHHSEECEEESHHHHCBCSSSCCBCCCSCCEEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred             cCCC-----cc-cccHHHHHHHHHHHhCeeecccCccccccCCcccCccCCccceEEEecCcccCCHHHHHHHHHHHHHH
Confidence            1000     00 0113344566777889976542111  10  0      11236999985   4888999999999987


Q ss_pred             HHH
Q 009517          524 HKN  526 (533)
Q Consensus       524 l~~  526 (533)
                      .++
T Consensus       428 ~~~  430 (456)
T d1c7ga_         428 YQH  430 (456)
T ss_dssp             HTT
T ss_pred             Hhh
Confidence            753

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=6.8e-17  Score=165.81  Aligned_cols=325  Identities=11%  Similarity=0.081  Sum_probs=193.5

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChH-HHHHHHHHHhc--cCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecC
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGAS-PAVHMMMQLLI--RSENDGILCPIPQYPLYSASIALHGGTLVPYYLD  245 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~-~al~~~~~~l~--~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~  245 (533)
                      ...+...+.+++.+.+|.+.... .++++|++ .++.+++.++.  ..+++.|+++...|..+..++..+|.+++.+...
T Consensus        92 ~~~le~~~~~~~~~l~g~~~~~~-~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~~~g~~~~~v~~~  170 (445)
T d3bc8a1          92 LNKITNSLVLNVIKLAGVHSVAS-CFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENV  170 (445)
T ss_dssp             HHHHHHHHHHHHHHHHTCTTCCE-EEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECCE
T ss_pred             HHHHHHHHHHHHHHHhCCCcccC-ccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHHHcCCeeEEEEee
Confidence            45677778888877777554333 44555555 45544444442  1456899999999999999999999998888643


Q ss_pred             -CCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcc
Q 009517          246 -EATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (533)
Q Consensus       246 -~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~  324 (533)
                       .++++.+|+++|+++|++...  .++.+|++++|+|++|.+-+   +++|+++|++||+++++|++|........    
T Consensus       171 ~~~~~~~id~~~l~~~i~~~~~--~~~~~v~~~~~~~~~G~~~~---~~~i~~~~~~~~~~l~vD~a~~~~~~~~~----  241 (445)
T d3bc8a1         171 LEGDELRTDLKAVEAKIQELGP--EHILCLHSTTACFAPRVPDR---LEELAVICANYDIPHVVNNAYGLQSSKCM----  241 (445)
T ss_dssp             EETTEEECCHHHHHHHHHHHCG--GGEEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHHH----
T ss_pred             ccCcccccCHHHHHHHHHhccc--cCeEEEEEeCCCCCCeeehh---HHHHHHHHHHhCCcEEEEccchhhhhhcc----
Confidence             234678999999999987522  25888999999999999987   99999999999999999999975332110    


Q ss_pred             cHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCC
Q 009517          325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKV  403 (533)
Q Consensus       325 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~  403 (533)
                      ........++  .-|   ++..|.+|++.+  +...|+++.  .+..+.+.+..... .....+.+.+.+....+.    
T Consensus       242 ~~~~~~~~~~--~vd---~~~~s~hK~~~~--p~g~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----  308 (445)
T d3bc8a1         242 HLIQQGARVG--RID---AFVQSLDKNFMV--PVGGAIIAG--FNEPFIQDISKMYPGRASASPSLDVLITLLSLG----  308 (445)
T ss_dssp             HHHHHHHHHS--CCC---EEEEEHHHHHSC--CSSCEEEEE--SCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHH----
T ss_pred             ccchhccCcC--Ccc---eEEecCcccccc--CCCCceeee--CChHHHHHHHHHHhhcccCcchHHHHHHHHHHh----
Confidence            1111112221  123   557788998743  344566665  46777776655433 222333333333332221    


Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCceEec-CCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHH
Q 009517          404 GDESYESYCAERDGILSSLARRAKTLEDAFNSL---EGITCNK-AEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRL  479 (533)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~g~~~~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  479 (533)
                              .+......+...++.+++.+.|.++   .+..+.. +......+..+......       ...+...+. ..
T Consensus       309 --------~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~-------~~~~~~~l~-~~  372 (445)
T d3bc8a1         309 --------CSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGH-------HDKAVTQLG-SM  372 (445)
T ss_dssp             --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSS-------SSCHHHHHH-HH
T ss_pred             --------hhcchhhHHHHHHHHHHHHHHHHHHHhhcCceeecCCCCCcceEEEeeecccc-------CCCCHHHHH-HH
Confidence                    1222333444444555555555443   1333322 22223333222211100       001112222 34


Q ss_pred             HHccceEE----EcCC----------CCCC---CCCCceEEEEec--CCcCcHHHHHHHHHHHHHHHHHHhc
Q 009517          480 LNATGIVL----VPGS----------GFGQ---VPGTWHFRCTIL--PQEDKIPAIVTRLTDFHKNFMDKFR  532 (533)
Q Consensus       480 l~~~gV~v----~pg~----------~f~~---~~g~~~iRis~~--~~~e~i~~~~~~l~~~l~~~~~~~~  532 (533)
                      |.+.||..    .++.          .|+.   .....++|+++.  .+++||+.++++|++++++++++.+
T Consensus       373 L~~~gI~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~i~i~~~~~~T~eDID~~v~~L~kilk~~rk~~~  444 (445)
T d3bc8a1         373 LFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRKEQT  444 (445)
T ss_dssp             HHHTTCCSCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHcCCCcceeeccccccchhhhhhhhcCCCCccCCCCeEEEeCcCCCCHHHHHHHHHHHHHHHHHHHhhhc
Confidence            55566621    1111          1111   112237999886  7889999999999999999988643

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.75  E-value=2.3e-16  Score=158.00  Aligned_cols=313  Identities=14%  Similarity=0.121  Sum_probs=203.9

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHh-ccCCCCeEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL-IRSENDGIL  219 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~~gd~Vl  219 (533)
                      +.+.++++.+.+.+    +.  |+.-....+|.+.+|++++        .+.++.+++|+.|+.++++++ + ++||+|+
T Consensus        11 ~~~~~~~~~~~~~~----~~--~~~G~~v~~~E~~la~~~g--------~~~ai~~~sgt~Al~~al~al~~-~~gdeVi   75 (376)
T d1mdoa_          11 GAEELAAVKTVLDS----GW--ITTGPKNQELEAAFCRLTG--------NQYAVAVSSATAGMHIALMALGI-GEGDEVI   75 (376)
T ss_dssp             CHHHHHHHHHHHHH----TC--CSSSHHHHHHHHHHHHHHC--------CSEEEEESCHHHHHHHHHHHTTC-CTTCEEE
T ss_pred             CHHHHHHHHHHHhc----CC--CcCCHHHHHHHHHHHHHHC--------cCeEEEeCCHHHHHHHHHHHhCC-CCCCEEE
Confidence            57778888888876    22  3332336789999999975        357888899999999999998 5 7999999


Q ss_pred             EcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHH
Q 009517          220 CPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC  299 (533)
Q Consensus       220 v~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~  299 (533)
                      ++..+|.....++..+|++++.++++.+ ++.+|++.|++++++      +|++|+++|   ..|...+   +++|.++|
T Consensus        76 ~~~~~~~~~~~ai~~~g~~pv~~d~~~~-~~~~d~~~l~~~i~~------~tkaIi~~h---~~G~~~~---~~~i~~i~  142 (376)
T d1mdoa_          76 TPSMTWVSTLNMIVLLGANPVMVDVDRD-TLMVTPEHIEAAITP------QTKAIIPVH---YAGAPAD---LDAIYALG  142 (376)
T ss_dssp             EESSSCHHHHHHHHHTTCEEEEECBCTT-TCCBCHHHHHHHCCT------TEEEECCBC---GGGCCCC---HHHHHHHH
T ss_pred             Eecccccccccchhccccceeeeccccc-ccCCCHHHHHHhcCC------CCeEEEEeC---CCCCccc---hhHHHHHH
Confidence            9999999999999999999999999875 778999999999987      899998765   5677766   88899999


Q ss_pred             HHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecC--CccCCCCCCCeeEEEEEecCCHHHHHHHH
Q 009517          300 KKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSV--SKGYYGECGKRGGYMEVTGFSAEVREQIY  377 (533)
Q Consensus       300 ~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~--SK~~~gl~G~riG~v~~~~~~~~~~~~l~  377 (533)
                      +++|++||+|++++....-.+..          .   ...+.  .+.||  +|.+ + +| ..|.++.  .++++.+.+.
T Consensus       143 ~~~~i~vIeD~a~a~g~~~~~~~----------~---g~~g~--~~~Sf~~~K~l-~-~g-~GG~i~t--~~~~l~~~~~  202 (376)
T d1mdoa_         143 ERYGIPVIEDAAHATGTSYKGRH----------I---GARGT--AIFSFHAIKNI-T-CA-EGGIVVT--DNPQFADKLR  202 (376)
T ss_dssp             HHHTCCBCEECTTCTTCEETTEE----------T---TSSSE--EEEECCTTSSS-C-SS-SCEEEEE--SCHHHHHHHH
T ss_pred             HhcCceEEeccchhccCeeCCee----------c---ccccC--ccccCCCcCCC-C-CC-CCCEEEE--echhHHHHHH
Confidence            99999999999997533211111          0   01112  24455  5877 3 33 4677776  4777877776


Q ss_pred             Hhhhcc-----------------------c--cCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009517          378 KVASVN-----------------------L--CSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDA  432 (533)
Q Consensus       378 ~~~~~~-----------------------~--~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  432 (533)
                      .+....                       +  ..+.+..+++..-|              ..++...++.++.++++.+.
T Consensus       203 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aai~~~qL--------------~~~~~~~~~r~~~~~~~~~~  268 (376)
T d1mdoa_         203 SLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQL--------------QKLDALNARRAAIAAQYHQA  268 (376)
T ss_dssp             HHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHH--------------HTHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccCCcccccccccccccccccchhcccccccchhhhhhhhhhh--------------hhhhHHHHHHhhhhhhhhhh
Confidence            654211                       1  11222222222222              23444555566677788888


Q ss_pred             HhcCCCceEecCCc----eeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCC---------CCCC-
Q 009517          433 FNSLEGITCNKAEG----AMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFG---------QVPG-  498 (533)
Q Consensus       433 L~~~~g~~~~~~~g----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~---------~~~g-  498 (533)
                      |++++++.......    .++.++. ..+...      .+.. ...+. +.|+++||.+.+...--         ...+ 
T Consensus       269 L~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~-Rd~l~-~~L~~~gI~~~~~y~~~~~~~~~~~~~~~~~  339 (376)
T d1mdoa_         269 MADLPFQPLSLPSWEHIHAWHLFII-RVDEAR------CGIT-RDALM-ASLKTKGIGTGLHFRAAHTQKYYRERFPTLT  339 (376)
T ss_dssp             HHTSSCEECCCCSSCEECCCSCEEE-ECCHHH------HSSC-HHHHH-HHHHHTTBCCBCCCCCGGGSHHHHHHSTTCC
T ss_pred             ccccccccccccccccccccccccc-cccccc------chhh-HHHHH-HHHHHCCCCeeeECcchhcCHHHHhhCCCCC
Confidence            88875544333221    1111111 111110      0111 12333 55678899887532100         0001 


Q ss_pred             --------CceEEEEec--CCcCcHHHHHHHHHHHH
Q 009517          499 --------TWHFRCTIL--PQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       499 --------~~~iRis~~--~~~e~i~~~~~~l~~~l  524 (533)
                              .+.|.|-+.  .+++++++.++.|++++
T Consensus       340 ~p~a~~~~~~~i~LP~~~~lt~~ei~~I~~~i~~i~  375 (376)
T d1mdoa_         340 LPDTEWNSERICSLPLFPDMTESDFDRVITALHQIA  375 (376)
T ss_dssp             CHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHh
Confidence                    224666443  68899999999988864

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=99.75  E-value=1.5e-17  Score=168.51  Aligned_cols=317  Identities=13%  Similarity=0.085  Sum_probs=188.5

Q ss_pred             CHHHHHHHHHHHhcCCCCCcccc--CC--CcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhc-----
Q 009517          141 SADSIERAWQILDQIPGRATGAY--SH--SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI-----  211 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y--~~--~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-----  211 (533)
                      |..+++++.+.+.+.........  ..  ..-..+.|+.+|++++      +++++|++|.++++++..++....     
T Consensus        40 p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~llg------a~~~ei~~~~~~T~~~~~~~~~~~~~~~~  113 (404)
T d1qz9a_          40 PVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIG------ARDGEVVVTDTTSINLFKVLSAALRVQAT  113 (404)
T ss_dssp             BTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTT------CCTTSEEECSCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHhC------CCCCcEEEecCchHHHHHHhhhhhhhhcc
Confidence            78899999888865322111111  00  1113456777777765      789999999999999988765321     


Q ss_pred             cCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHH
Q 009517          212 RSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEEN  291 (533)
Q Consensus       212 ~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~  291 (533)
                      ..+++.|++.+-.++.....+...+.++..++.+..  ..++++.++++|++      +|++|++.+.+|.||.+++   
T Consensus       114 ~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~------~T~lV~i~~v~~~tG~~~p---  182 (404)
T d1qz9a_         114 RSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLR--LVDSPEELPQAIDQ------DTAVVMLTHVNYKTGYMHD---  182 (404)
T ss_dssp             HSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEE--EESSGGGHHHHCST------TEEEEEEESBCTTTCBBCC---
T ss_pred             cCCCcEEEEeccccchHHHHHHhhhheeeeeceecc--ccccchhHHHhcCC------CceEEEEecccccccceec---
Confidence            147888888887766544444333333222222211  14567888888877      8999999999999999999   


Q ss_pred             HHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHH
Q 009517          292 QRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAE  371 (533)
Q Consensus       292 l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~  371 (533)
                      +++|+++|+++++++++|.++.-...    + ..+..    +   ..|   +++.|..|.+.+ +..-+|++..   +.+
T Consensus       183 v~~i~~~~~~~~~~~~vD~~q~~g~~----~-~~~~~----~---~~d---~~~~s~~K~~~~-~~g~~g~~~~---~~~  243 (404)
T d1qz9a_         183 MQALTALSHECGALAIWDLAHSAGAV----P-VDLHQ----A---GAD---YAIGCTYKYLNG-GPGSQAFVWV---SPQ  243 (404)
T ss_dssp             HHHHHHHHHHHTCEEEEECTTTTTTS----C-CCHHH----H---TCS---EEEECSSSTTCC-CTTCCCEEEE---CTT
T ss_pred             HHHHhccccccccceeEEeecccccc----c-ccccc----c---cce---EEEEechhhccc-CCceEEEEEe---chh
Confidence            99999999999999999999875222    2 22222    2   344   667788897733 2233566665   554


Q ss_pred             HHHHHHHhh-----------------------h-ccccCChHHHHHHH---HHcCCCCCCChhHHHHHHHHHHHHHHHHH
Q 009517          372 VREQIYKVA-----------------------S-VNLCSNISGQILAS---LVMSPPKVGDESYESYCAERDGILSSLAR  424 (533)
Q Consensus       372 ~~~~l~~~~-----------------------~-~~~~~~~~~q~a~~---~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (533)
                      ..+.+....                       . .....+..+.....   ..+....         ....++.......
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~i~~~~~~~~~  314 (404)
T d1qz9a_         244 LCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTD---------MASLRRKSLALTD  314 (404)
T ss_dssp             TTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSC---------HHHHHHHHHHHHH
T ss_pred             hhhhCCccccccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHHHHhh---------HHHHHHHHHHhHH
Confidence            443322110                       0 01222333332222   2222111         1112222222333


Q ss_pred             HHHHHHHHHhcCCCceEecCC-----ceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCC
Q 009517          425 RAKTLEDAFNSLEGITCNKAE-----GAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGT  499 (533)
Q Consensus       425 ~~~~l~~~L~~~~g~~~~~~~-----gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~  499 (533)
                      ....+.+.+...+|++++.|.     +++..+   ..+.             ... +.+.|.++||.+..    . .+  
T Consensus       315 ~~~~l~~~~~~~~~~~i~~p~~~~~r~~~vsf---~~~~-------------~~~-v~~~L~~~gi~~~~----r-~~--  370 (404)
T d1qz9a_         315 LFIELVEQRCAAHELTLVTPREHAKRGSHVSF---EHPE-------------GYA-VIQALIDRGVIGDY----R-EP--  370 (404)
T ss_dssp             HHHHHHHHHHTTSCCEECSCSSGGGBCSEEEE---ECTT-------------HHH-HHHHHHTTTEECEE----E-TT--
T ss_pred             HHHHHHHhhccCCCEEEECCCCccceeeEEEE---ecCC-------------HHH-HHHHHHHCCCEEee----c-CC--
Confidence            333344455555788887653     454433   2221             223 33557789997531    0 12  


Q ss_pred             ceEEEEec---CCcCcHHHHHHHHHHHHHH
Q 009517          500 WHFRCTIL---PQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       500 ~~iRis~~---~~~e~i~~~~~~l~~~l~~  526 (533)
                      +.||||++   +|++||++++++|++++++
T Consensus       371 ~~lRiS~~h~ynt~~did~~~~~L~~vl~~  400 (404)
T d1qz9a_         371 RIMRFGFTPLYTTFTEVWDAVQILGEILDR  400 (404)
T ss_dssp             TEEEEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCCHHHHHHHHHHHHHHHHh
Confidence            38999984   6889999999999998875

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.75  E-value=2.3e-17  Score=168.77  Aligned_cols=303  Identities=12%  Similarity=0.092  Sum_probs=186.6

Q ss_pred             HHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhcc-CCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCC-CCC
Q 009517          172 LRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-SENDGILCPIPQYPLYSASIALHGGTLVPYYLDE-ATG  249 (533)
Q Consensus       172 lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~-~~~  249 (533)
                      +...+..++.+..|.  +.....+..|+++++..++.++.. .++++|+++.-.|+.+...+...|..++.++... +.+
T Consensus       114 ~~~~~~~~~~~~~g~--~~~~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~k~~~~~g~~~~~v~~~~~~~~  191 (434)
T d2z67a1         114 LTNKILESFFKQLGL--NVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDR  191 (434)
T ss_dssp             HHHHHHHHHHHHTTC--CCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTE
T ss_pred             HHHHHHHHHHHhcCC--CcceeecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHHHHHHHhCCcceEEEeecCCCc
Confidence            333444444455553  334456667777777777766531 2678999999999999999999999988886432 335


Q ss_pred             CCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEcccccccc-ccCCCCcccHHH
Q 009517          250 WGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENV-YVPEKKFHSFKK  328 (533)
Q Consensus       250 ~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~-~~~~~~~~~~~~  328 (533)
                      +.+|+++|+++|++....+ ++.+|++.+|++++|.+.+   +++|+++|++||+++++|++|..+. +.++     ...
T Consensus       192 ~~~d~~~l~~~i~~~~~~~-~~~~v~~~~~~~~~g~~~~---l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~-----~~~  262 (434)
T d2z67a1         192 VYVPVEDIENAIKKEIELG-NRPCVLSTLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQNNYYLE-----KLK  262 (434)
T ss_dssp             EECCHHHHHHHHHHHHHTT-CCEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHHHH-----HHH
T ss_pred             cCCCHHHHHHHHHhhhhcC-CceEEEeccCcCCCccccC---HHHHHHHHHHhCCeEEEeccchhhhhhccc-----ccc
Confidence            6799999999998865444 6778888899999999987   9999999999999999999997532 1110     001


Q ss_pred             HHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCCCCCChh
Q 009517          329 VSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPPKVGDES  407 (533)
Q Consensus       329 ~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~~~~~~~  407 (533)
                      ...+.   .-|   +++.|++|++.++.|  .|++..  .++.+++.+..... .+...+.....+....+.        
T Consensus       263 ~~~~~---~~D---~~~~s~hK~l~~~~g--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~--------  324 (434)
T d2z67a1         263 KAFKY---RVD---AVVSSSDKNLLTPIG--GGLVYS--TDAEFIKEISLSYPGRASATPVVNTLVSLLSMG--------  324 (434)
T ss_dssp             HHHTS---CCS---EEEEEHHHHHCCCSS--CEEEEE--SCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHH--------
T ss_pred             ccccC---Ccc---eEEEcCccccccCCC--cccccc--CcHHHHHHHHhhcccccccchHHHHHHHHHHHH--------
Confidence            11111   234   668899998854333  455554  47777777765543 222233333333333321        


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccc
Q 009517          408 YESYCAERDGILSSLARRAKTLEDAFNSL---EGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATG  484 (533)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g  484 (533)
                          .+..+.+.++..+..+++.+.|+++   .|..+..........+.+...              ...+ ...|.+.|
T Consensus       325 ----~~g~~~~~~~~~~~a~~l~~~L~~l~~~~g~~ll~~~~~~~~~~~~~~~--------------~~~l-~~~L~~~g  385 (434)
T d2z67a1         325 ----SKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVNSD--------------PVEI-AAKLYNLR  385 (434)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCCCSSEEEEECSSC--------------HHHH-HHHHHHTT
T ss_pred             ----HhcchhHHHHHHHHHHHHHHHHHHhhhhcCceecCCCCCceeeeecCCC--------------HHHH-HHHHHHcC
Confidence                1223445555566666777776654   355554433222222212211              2222 34566788


Q ss_pred             eEEE----cCCCCC----CCCCCceEEEEec--CCcCcHHHHHHHHHH
Q 009517          485 IVLV----PGSGFG----QVPGTWHFRCTIL--PQEDKIPAIVTRLTD  522 (533)
Q Consensus       485 V~v~----pg~~f~----~~~g~~~iRis~~--~~~e~i~~~~~~l~~  522 (533)
                      |...    +...++    ......++|++++  .|+|+|+.++++|++
T Consensus       386 I~g~~v~~~l~~~g~~~~~~~~~~~l~~~~s~~~T~edID~~i~~L~k  433 (434)
T d2z67a1         386 VTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEK  433 (434)
T ss_dssp             EESCEEECTTCHHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHT
T ss_pred             CeeeehhhhccccCeeeecccCCCeEEEecCCCCCHHHHHHHHHHHhc
Confidence            8532    222111    0111348999986  799999999999876

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.75  E-value=1.1e-16  Score=159.33  Aligned_cols=295  Identities=14%  Similarity=0.108  Sum_probs=182.2

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCC--EEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcc--hHHHHHHhCCeEEEEec
Q 009517          169 IKGLRDTIAAGIEARDGFPADPND--IFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPL--YSASIALHGGTLVPYYL  244 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~--i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~--~~~~~~~~g~~~~~v~~  244 (533)
                      ..+.|+.++++++      +++++  +++|+|+|++++.++..+. .+++.+++....+..  ........+.....+..
T Consensus        35 ~~~~r~~l~~l~~------~~~~~~~i~~t~s~T~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (361)
T d1m32a_          35 VEQIRQQLTALAT------ASEGYTSVLLQGSGSYAVEAVLGSAL-GPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDC  107 (361)
T ss_dssp             HHHHHHHHHHHHC------SSSSEEEEEEESCHHHHHHHHHHHSC-CTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEEC
T ss_pred             HHHHHHHHHHHhC------CCCCCEEEEECCCHHHHHHHHHHHhh-hhccccceeeehhhhhhHHHHhhhhhcccccccc
Confidence            6788888888875      44554  7788899999999999998 577666666554433  33344555666666655


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcc
Q 009517          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFH  324 (533)
Q Consensus       245 ~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~  324 (533)
                      ........+.+......      ..+++.+.+++.+|-||...+   +++|.++|++||+++++|.+++-...    + .
T Consensus       108 ~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~tG~~~~---i~~i~~~~~~~g~~~~vDa~qs~G~~----~-~  173 (361)
T d1m32a_         108 GEVARPDVQAIDAILNA------DPTISHIAMVHSETTTGMLNP---IDEVGALAHRYGKTYIVDAMSSFGGI----P-M  173 (361)
T ss_dssp             CTTSCCCHHHHHHHHHH------CTTCCEEEEESEETTTTEECC---HHHHHHHHHHHTCEEEEECTTTTTTS----C-C
T ss_pred             cccCCccchhhHHHHHh------ccCccceEEEeeecccccchh---hhhhhhhhcccceeeEeecccccCcc----c-c
Confidence            54322222222222322      238999999999999999999   89999999999999999999985222    1 1


Q ss_pred             cHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHh------------------hh-cccc
Q 009517          325 SFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV------------------AS-VNLC  385 (533)
Q Consensus       325 ~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~------------------~~-~~~~  385 (533)
                      .+..    +   ..|   +++.|..|.+.|.+|  +|++.+   .++..+++...                  .. ...+
T Consensus       174 d~~~----~---~~D---~~~~s~~K~l~gp~G--~g~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t  238 (361)
T d1m32a_         174 DIAA----L---HID---YLISSANKCIQGVPG--FAFVIA---REQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFT  238 (361)
T ss_dssp             CTTT----T---TCS---EEEEESSSTTCCCSS--EEEEEE---EHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSC
T ss_pred             cccc----c---ccc---eEEeeecccccCCCC--ceEEEe---chhhhhhhccccccccccchhhhccccccccccCCC
Confidence            1111    1   233   778888998866667  566665   55544332211                  11 2244


Q ss_pred             CChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCC----ceeEEecccCCCHHHH
Q 009517          386 SNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAE----GAMYLFPRIQLPEKAI  461 (533)
Q Consensus       386 ~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~----gg~~~~~~~~~~~~~~  461 (533)
                      ++.....+....+..      ..  .....+...++.+...+.+.+.++.. |+....+.    .++..+   ..|.+. 
T Consensus       239 ~~~~~~~~~~~~l~~------~~--~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~~~~rs~~v~~~---~~p~~~-  305 (361)
T d1m32a_         239 SPTHTVLAFAQALKE------LA--KEGGVAARHQRYQQNQRSLVAGMRAL-GFNTLLDDELHSPIITAF---YSPEDP-  305 (361)
T ss_dssp             CCHHHHHHHHHHHHH------HH--HHTHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEE---ECCCCT-
T ss_pred             CCchhhhHHHHHHHH------HH--HhcchhhhHHHHHHHHHHHHHHHhhc-CCcccCChhhcCCcEEEE---ECCCCC-
Confidence            555555555554421      00  01113344455666677788888776 54443221    122222   222210 


Q ss_pred             HHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEe-c-CCcCcHHHHHHHHHHHH
Q 009517          462 KAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTI-L-PQEDKIPAIVTRLTDFH  524 (533)
Q Consensus       462 ~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~-~-~~~e~i~~~~~~l~~~l  524 (533)
                            +. +...+ ...|.++||.+.+|....  .  +.||||. . .++++|++++++|+++|
T Consensus       306 ------~~-~~~~~-~~~l~~~gi~i~~G~~~~--~--~~~Ris~~g~~~~~di~~lv~al~~~L  358 (361)
T d1m32a_         306 ------QY-RFSEF-YRRLKEQGFVIYPGKVSQ--S--DCFRIGNIGEVYAADITALLTAIRTAM  358 (361)
T ss_dssp             ------TC-CHHHH-HHHHHHTTEECEECCCSS--S--CEEEEECCSSCCHHHHHHHHHHHHHHC
T ss_pred             ------CC-CHHHH-HHHHHHCCcEEECCCcCC--C--CEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence                  01 22333 356778999999885432  2  3899996 3 78889999999998875

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=1.1e-15  Score=151.47  Aligned_cols=215  Identities=16%  Similarity=0.132  Sum_probs=161.5

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHH----HhCCeEEEEec
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIA----LHGGTLVPYYL  244 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~----~~g~~~~~v~~  244 (533)
                      ...|.+.++++-+        .+..+++++|+.|+..++..++ .+||.|+++...|.+....++    ..|.++..+..
T Consensus        60 ~~~le~~la~LEg--------~~~a~~~~SGMaAi~~~l~~l~-~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~~d~  130 (391)
T d1cl1a_          60 HFSLQQAMCELEG--------GAGCVLFPCGAAAVANSILAFI-EQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDP  130 (391)
T ss_dssp             HHHHHHHHHHHHT--------CSEEEEESSHHHHHHHHHHHHC-CTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECT
T ss_pred             HHHHHHHHHHHhC--------CccEEEeccccceeeehhhccc-CCCCeEEEecccccchhhhhhhcccccccccccccC
Confidence            4556666666543        4678999999999999999998 899999999999998666554    35778777653


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHc--CCEEEEccccccccccCCCC
Q 009517          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKE--GLVLLADEVYQENVYVPEKK  322 (533)
Q Consensus       245 ~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~--~~~lI~De~y~~~~~~~~~~  322 (533)
                      .       |.+++++++++      ++++|++++|.||+..+.+   +++|+++|+++  |+++|+|..+....+-  .|
T Consensus       131 ~-------d~~~~~~~i~~------~t~~i~~EtpsNP~l~v~D---i~~i~~~a~~~~~g~~~vVDnT~atP~~~--~P  192 (391)
T d1cl1a_         131 L-------IGADIVKHLQP------NTKIVFLESPGSITMEVHD---VPAIVAAVRSVVPDAIIMIDNTWAAGVLF--KA  192 (391)
T ss_dssp             T-------CGGGGGGTCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCTTCEEEEECTTTTTTSS--CG
T ss_pred             c-------ccccccccccc------ccceeeecccCcccccccc---cHHHHHHHHhccCCcEEEEeccccchhhh--cc
Confidence            2       57788888876      8999999999999999998   88888888764  9999999999763331  11


Q ss_pred             cccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcCCC
Q 009517          323 FHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMSPP  401 (533)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~~~  401 (533)
                         + .    +   ..|   |++.|.+|.++|-...=.|.++.   ++++...+..... ...+.++..++.+..-|+  
T Consensus       193 ---l-~----~---GaD---ivvhS~TKy~~GhsdvlgG~vv~---~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgl~--  253 (391)
T d1cl1a_         193 ---L-D----F---GID---VSIQAATKYLVGHSDAMIGTAVC---NARCWEQLRENAYLMGQMVDADTAYITSRGLR--  253 (391)
T ss_dssp             ---G-G----G---TCS---EEEEETTTTTTCSSSCCCEEEEE---CTTTHHHHHHHHHHTTCCCCHHHHHHHHHHHT--
T ss_pred             ---c-c----c---ccc---eEEeecchhccccccccccceec---cccccccchhhhhcccccCCchhhhhhhccch--
Confidence               1 1    1   245   88999999997655566788776   7777777666554 556667777777766654  


Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceE
Q 009517          402 KVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITC  441 (533)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~  441 (533)
                                  .+..+.++..++...+.+.|++.|.+..
T Consensus       254 ------------TL~lR~~~~~~nA~~vA~~L~~hp~V~~  281 (391)
T d1cl1a_         254 ------------TLGVRLRQHHESSLKVAEWLAEHPQVAR  281 (391)
T ss_dssp             ------------THHHHHHHHHHHHHHHHHHHHTCTTEEE
T ss_pred             ------------hHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence                        2445556677788889999998866553

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=99.74  E-value=4.8e-16  Score=151.15  Aligned_cols=212  Identities=14%  Similarity=0.167  Sum_probs=158.9

Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHH----HHHHhCCeEEEEecCC
Q 009517          171 GLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA----SIALHGGTLVPYYLDE  246 (533)
Q Consensus       171 ~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~----~~~~~g~~~~~v~~~~  246 (533)
                      .|.+.+|++.+        .+..+++++|+.|+..++..++ ++||+|+++.+.|.+-..    .+...|.++..++.. 
T Consensus         2 aLE~~la~Leg--------~~~a~~~sSGMaAi~~~l~~ll-~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~~-   71 (331)
T d1pffa_           2 ALEGKIAKLEH--------AEACAATASGMGAIAASVWTFL-KAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMA-   71 (331)
T ss_dssp             HHHHHHHHHHT--------CSEEEEESSHHHHHHHHHHHHC-CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-
T ss_pred             HHHHHHHHHhC--------CCeEEEECCHHHHHHHHHHHHh-CCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEeccc-
Confidence            46777888754        4678999999999999999988 899999999999977443    456689998887643 


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHH-HHcCCEEEEccccccccccCCCCccc
Q 009517          247 ATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFC-KKEGLVLLADEVYQENVYVPEKKFHS  325 (533)
Q Consensus       247 ~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~-~~~~~~lI~De~y~~~~~~~~~~~~~  325 (533)
                            |++.+++++++      ++++|+++.|.||+..+.+   ++++++++ +++|+++|+|..+....+-.  |   
T Consensus        72 ------d~~~~~~~i~~------~t~~i~~Es~~np~~~v~d---~~~~~~~~a~~~~~~~vVDnT~atp~~~~--p---  131 (331)
T d1pffa_          72 ------VPGNIEKHLKP------NTRIVYFETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILTN--P---  131 (331)
T ss_dssp             ------STTHHHHTCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHCC--G---
T ss_pred             ------chhhHhhhccc------ccceeeeeccccccccccc---chhhhhhhhcccCceEEeecccccccccc--c---
Confidence                  67889998877      8999999999999999998   77777764 56899999999997533311  1   


Q ss_pred             HHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHh--hh-ccccCChHHHHHHHHHcCCCC
Q 009517          326 FKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV--AS-VNLCSNISGQILASLVMSPPK  402 (533)
Q Consensus       326 ~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~--~~-~~~~~~~~~q~a~~~~L~~~~  402 (533)
                         +  ++   ..|   |++.|++|.++|-...-.|+++.   +++........  .. .....++..+..+..-|    
T Consensus       132 ---l--~~---GaD---iVv~S~TKy~~Gh~d~~~G~v~~---~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl----  193 (331)
T d1pffa_         132 ---L--DL---GVD---IVVHSATKYINGHTDVVAGLVCS---RADIIAKVKSQGIKDITGAIISPHDAWLITRGT----  193 (331)
T ss_dssp             ---G--GG---TCS---EEEEETTTTTSSSSSCCCEEEEE---CHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHH----
T ss_pred             ---c--cc---CCC---EEEecchhhcCCCCccccccccc---cccchhhhhhhhhhhccCCCCCHHHHHHHHHHH----
Confidence               1  11   245   88999999997755577788887   76665554332  22 34556677766666554    


Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Q 009517          403 VGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGIT  440 (533)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~  440 (533)
                                +.+..+.++..++...+.+.|++.|.++
T Consensus       194 ----------~Tl~~Rm~~~~~nA~~lA~~L~~hp~V~  221 (331)
T d1pffa_         194 ----------LTLDMRVKRAAENAQKVAEFLHEHKAVK  221 (331)
T ss_dssp             ----------HHHHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHhhhhCCcEE
Confidence                      4456666777888888999998876653

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=99.74  E-value=2.5e-15  Score=149.13  Aligned_cols=284  Identities=15%  Similarity=0.166  Sum_probs=197.1

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHH----HHHHhCCeEEEEec
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA----SIALHGGTLVPYYL  244 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~----~~~~~g~~~~~v~~  244 (533)
                      ...|.+.++++-+        .+..+++++|+.|+..++..++ .+||.|++.+..|.+...    .+...|..+..++.
T Consensus        61 ~~~le~~la~LEg--------~~~a~~~sSGmaAi~~~~l~l~-~~gd~vv~~~~~yg~t~~~~~~~~~~~gi~~~~~d~  131 (394)
T d1e5ea_          61 VSNLEGKIAFLEK--------TEACVATSSGMGAIAATVLTIL-KAGDHLISDECLYGCTHALFEHALTKFGIQVDFINT  131 (394)
T ss_dssp             HHHHHHHHHHHHT--------CSEEEEESSHHHHHHHHHHHHC-CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT
T ss_pred             HHHHHHHHHHHhC--------CcceeeeccchHHHHHHHHhhc-ccccccccccceeehhhHhHHHHhhccceeeeccCC
Confidence            3456666666543        4678889999999999998888 899999999999976443    45667899888875


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHH-cCCEEEEccccccccccCCCCc
Q 009517          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKK-EGLVLLADEVYQENVYVPEKKF  323 (533)
Q Consensus       245 ~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~-~~~~lI~De~y~~~~~~~~~~~  323 (533)
                      .       |++++++++++      ++++|+++.|.|||..+.+   ++++++.+++ +|+++|+|..+..-.+-  .| 
T Consensus       132 ~-------d~~~~~~~i~~------~t~lv~~Etp~NP~l~v~D---i~~~~~~~~~~~g~~vvvDnT~atP~~~--~P-  192 (394)
T d1e5ea_         132 A-------IPGEVKKHMKP------NTKIVYFETPANPTLKIID---MERVCKDAHSQEGVLVIADNTFCSPMIT--NP-  192 (394)
T ss_dssp             T-------STTHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHTSTTCEEEEECTTTCTTTC--CG-
T ss_pred             C-------CHHHHHHhhcc------cccEEEEeccCCcceeeeh---hhhhhhccccccCeEEEecCcccCcccC--Cc-
Confidence            4       56788999877      8999999999999999998   7788876664 68999999999653321  11 


Q ss_pred             ccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHh--hh-ccccCChHHHHHHHHHcCC
Q 009517          324 HSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKV--AS-VNLCSNISGQILASLVMSP  400 (533)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~--~~-~~~~~~~~~q~a~~~~L~~  400 (533)
                        + .    +   ..|   |++.|.+|.++|-...-.|.+++   +.+.+...+..  +. .....++..++.+..-|+.
T Consensus       193 --l-~----~---GaD---iVvhS~TKy~~GhsDv~~G~v~~---~~~~~~~~~~~~~~~~~G~~lsp~~a~ll~rgl~T  256 (394)
T d1e5ea_         193 --V-D----F---GVD---VVVHSATKYINGHTDVVAGLICG---KADLLQQIRMVGIKDITGSVISPHDAWLITRGLST  256 (394)
T ss_dssp             --G-G----G---TCS---EEEEETTTTTTCSSCCCCEEEEE---CHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTT
T ss_pred             --h-h----c---CCC---EEEechhhhcCCCcccccccccc---hhhHHHHHHHHHHHHhhCCCCChHHHHHHHhhchh
Confidence              1 1    1   245   88999999997755577888877   77777655432  22 4556778888877776642


Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEe-c-----------------CCceeEEecccCCCHHHHH
Q 009517          401 PKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCN-K-----------------AEGAMYLFPRIQLPEKAIK  462 (533)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~-----------------~~gg~~~~~~~~~~~~~~~  462 (533)
                                    +..+.++..++...+.+.|++.|.++.+ -                 .-|+++.|. +..      
T Consensus       257 --------------L~lRm~r~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~G~~~sf~-~~~------  315 (394)
T d1e5ea_         257 --------------LNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFI-LKS------  315 (394)
T ss_dssp             --------------HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEE-ETT------
T ss_pred             --------------HHHHHHHHHHHHHHHHHHHhhcCCccEEeCCCcccccchhhhhcccccCCCeeeee-ccC------
Confidence                          4555666778888999999998765432 1                 226666552 221      


Q ss_pred             HHHhcCCCChHHHHHHHHHccceEEEcCCCCCCC------------------------CCCceEEEEecCCcCcHHHHHH
Q 009517          463 AAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQV------------------------PGTWHFRCTILPQEDKIPAIVT  518 (533)
Q Consensus       463 ~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~------------------------~g~~~iRis~~~~~e~i~~~~~  518 (533)
                               +.+.+.+.++.-.+ +..+..+|..                        -.++.||||+++  |+++.+++
T Consensus       316 ---------~~~~a~~f~~~l~l-~~~a~SlGg~eSLi~~p~~~th~~~~~~~r~~~Gi~~~liRlSVGl--Ed~eDLi~  383 (394)
T d1e5ea_         316 ---------GFEGAKKLLDNLKL-ITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI--EDADELIA  383 (394)
T ss_dssp             ---------HHHHHHHHHHTCSS-SEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS--SCHHHHHH
T ss_pred             ---------CHHHHHHHHHhCCc-cceeeccCCccceeECccccccccCCHHHHHhcCCCcCEEEEEecc--CCHHHHHH
Confidence                     11222344444333 2333333310                        013489999996  66888999


Q ss_pred             HHHHHHHHHHH
Q 009517          519 RLTDFHKNFMD  529 (533)
Q Consensus       519 ~l~~~l~~~~~  529 (533)
                      .|+++++.+.+
T Consensus       384 Dl~qAl~~l~~  394 (394)
T d1e5ea_         384 DFKQGLDALLR  394 (394)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHhhC
Confidence            99999987753

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=2.7e-16  Score=157.91  Aligned_cols=328  Identities=10%  Similarity=0.041  Sum_probs=203.4

Q ss_pred             cCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCC--CCCCCEEEcCChHHHHHHHHHHhcc--
Q 009517          137 QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFP--ADPNDIFLTDGASPAVHMMMQLLIR--  212 (533)
Q Consensus       137 ~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~--~~~~~i~~t~G~~~al~~~~~~l~~--  212 (533)
                      |..+|+.|++++    ...   ...++.+.  ..++.+.+.+.+.+.++..  .+++.|++|.|+|++++.++..+..  
T Consensus        11 P~~v~~~V~~Am----~~~---~~~hr~~~--f~~~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~~   81 (382)
T d2bkwa1          11 PIILSGAVQKAL----DVP---SLGHTSPE--FVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSK   81 (382)
T ss_dssp             SCCCCHHHHHTT----SCC---CCCTTSHH--HHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTT
T ss_pred             CCCCCHHHHHHh----Ccc---cCCCCcHH--HHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHHhc
Confidence            444577776654    221   12233321  3344444445555544432  3566799999999999999999852  


Q ss_pred             CCCCeEEEcCCcCcch--HHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHH
Q 009517          213 SENDGILCPIPQYPLY--SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE  290 (533)
Q Consensus       213 ~~gd~Vlv~~p~~~~~--~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~  290 (533)
                      ++||+|++..-.++..  ...++..|.....+...+. +...+.+.+++.+...     +++++++++.+|.||...+  
T Consensus        82 ~~gd~vlv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~tg~~~~--  153 (382)
T d2bkwa1          82 APNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKI-GESVPLELITEKLSQN-----SYGAVTVTHVDTSTAVLSD--  153 (382)
T ss_dssp             CSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCSST-TSCCCHHHHHHHHHHS-----CCSEEEEESEETTTTEECC--
T ss_pred             CCCCceEEEEechhhhhhhhhccccccccccccccCC-CCccchhHHHHHhhhc-----cchheeeeecccccccccc--
Confidence            4789999988766553  3455667887776654432 4467899999888774     7899999999999999999  


Q ss_pred             HHHHHHHHHHHc--CCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecC
Q 009517          291 NQRAIVDFCKKE--GLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGF  368 (533)
Q Consensus       291 ~l~~i~~l~~~~--~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~  368 (533)
                       ++++.+.|+++  ++++++|.+++-    |..+ .++    ..+   .-|   +++.|-.|++.|++|  +|++++   
T Consensus       154 -~~~~~~~~~~~~~~~~~~vDa~qs~----g~~p-id~----~~~---giD---~~~~s~~K~l~gP~G--~g~l~v---  212 (382)
T d2bkwa1         154 -LKAISQAIKQTSPETFFVVDAVCSI----GCEE-FEF----DEW---GVD---FALTASQKAIGAPAG--LSISLC---  212 (382)
T ss_dssp             -HHHHHHHHHHHCTTSEEEEECTTTT----TTSC-CCT----TTT---TCS---EEEEESSSTTCCCSC--EEEEEE---
T ss_pred             -chhhhhhccccccceeeeeeccccc----cccc-ccc----ccc---Cee---EEeecccccCcCCCc--hhhhhc---
Confidence             67777777766  599999999975    2222 111    111   123   678888999877777  577766   


Q ss_pred             CHHHHHHHHHhh--------------------------h-ccccCChHHHHHHHHHcCCCCCCChhHHHHHH-HHHHHHH
Q 009517          369 SAEVREQIYKVA--------------------------S-VNLCSNISGQILASLVMSPPKVGDESYESYCA-ERDGILS  420 (533)
Q Consensus       369 ~~~~~~~l~~~~--------------------------~-~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~-~~~~~~~  420 (533)
                      .+++++.+....                          . ...+++....+++..+|+          ...+ ..+...+
T Consensus       213 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~----------~~~~~g~~~~~~  282 (382)
T d2bkwa1         213 SSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALK----------EILEEGLHKRWD  282 (382)
T ss_dssp             CHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHH----------HHHHHCHHHHHH
T ss_pred             cHHHHhhhhhcccCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHHH----------HHHHhhhhhhHH
Confidence            887776553211                          0 123455555566666653          1111 2455566


Q ss_pred             HHHHHHHHHHHHHhcCCCceEec---CCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCC
Q 009517          421 SLARRAKTLEDAFNSLEGITCNK---AEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVP  497 (533)
Q Consensus       421 ~~~~~~~~l~~~L~~~~g~~~~~---~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~  497 (533)
                      +.++.++++++.+.+..++....   ........+.+..|.             ... +...|+++||.+..|..-  ..
T Consensus       283 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~s~~v~~~~~~~-------------~~~-~~~~L~~~gi~i~~G~~~--~~  346 (382)
T d2bkwa1         283 LHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVAD-------------PPD-VIAFLKSHGVVIAGGIHK--DI  346 (382)
T ss_dssp             HHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEECSC-------------HHH-HHHHHHHTTEECBCCCCT--TT
T ss_pred             HHHHHHHHHHHHhhhcccccccccCchhccCCcEEEEcCCC-------------HHH-HHHHHHHCCeEEECCCCh--hh
Confidence            66777888888887654544332   111111111123232             222 346678899999987542  22


Q ss_pred             CCceEEEE-ec--CCcCcHHHHHHHHHHHHHHHH
Q 009517          498 GTWHFRCT-IL--PQEDKIPAIVTRLTDFHKNFM  528 (533)
Q Consensus       498 g~~~iRis-~~--~~~e~i~~~~~~l~~~l~~~~  528 (533)
                      +.+.|||+ ++  .++++++.+++.|+.+.+.++
T Consensus       347 ~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~~~L~  380 (382)
T d2bkwa1         347 GPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQ  380 (382)
T ss_dssp             GGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTT
T ss_pred             cCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHHHC
Confidence            33489999 55  456777888877766555443

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=99.73  E-value=2.5e-15  Score=149.74  Aligned_cols=217  Identities=14%  Similarity=0.064  Sum_probs=154.1

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHH----HHHhCCeEEEEec
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSAS----IALHGGTLVPYYL  244 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~----~~~~g~~~~~v~~  244 (533)
                      ...|.++++++-+        .+..+++++|+.|+..++..++ ++||+|+++...|.+....    +...|..+..+..
T Consensus        60 ~~~LE~~la~LE~--------~~~a~~~~SGmaAi~~~~~~l~-~~gd~il~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~  130 (421)
T d2ctza1          60 VDVLEKRLAALEG--------GKAALATASGHAAQFLALTTLA-QAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSR  130 (421)
T ss_dssp             HHHHHHHHHHHHT--------CSEEEEESSHHHHHHHHHHHHC-CTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCT
T ss_pred             HHHHHHHHHHHhC--------CCeEEEecChHHHHHHHHHhhc-ccccceeecCCcCCchhHHHHHHHhhccccceeccc
Confidence            3456666666643        4678899999999999999998 8999999999999876554    4557888887654


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccc-c-ccccCCCC
Q 009517          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQ-E-NVYVPEKK  322 (533)
Q Consensus       245 ~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~-~-~~~~~~~~  322 (533)
                      ..      +.+..+..+++      ++++|++++|.|||..+.+   +++|+++|+++|+++|+|..+. . +.+.   |
T Consensus       131 ~~------~~~~~~~~~~~------~t~li~~EtpsNP~l~v~D---i~~i~~iA~~~g~~~vvDnT~a~tP~~~~---P  192 (421)
T d2ctza1         131 EE------RPEEFLALTDE------KTRAWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFGMGGYLLR---P  192 (421)
T ss_dssp             TC------CHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGGGGTSCC---G
T ss_pred             cc------CcchhccccCC------CceEEEEcCCCcceeEecc---hHHHHHHHHhcCCceEecccccccceecc---c
Confidence            32      34555666655      8999999999999999998   9999999999999999999986 2 2211   1


Q ss_pred             cccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCC----------------------------HHHHH
Q 009517          323 FHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFS----------------------------AEVRE  374 (533)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~----------------------------~~~~~  374 (533)
                            +  ++   ..|   |++.|.+|.++|-...=.|.++.....                            ..++.
T Consensus       193 ------l--~~---GaD---iVvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (421)
T d2ctza1         193 ------L--AW---GAA---LVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIV  258 (421)
T ss_dssp             ------G--GG---TCS---EEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHH
T ss_pred             ------c--cc---CCc---EEEEechhhccCCCCeEEEEEEcCCcchhhhcccccccCCchhhhhhHHHHHhccHHHHH
Confidence                  1  11   245   889999999976544667777752100                            01111


Q ss_pred             HHH-Hh-hhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Q 009517          375 QIY-KV-ASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGIT  440 (533)
Q Consensus       375 ~l~-~~-~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~  440 (533)
                      ++. .. .....+.++..+..+..-|+.              +..+.++..++...+.+.|++.|.++
T Consensus       259 ~~~~~~~~~~G~~~sP~~a~l~~rgl~T--------------L~lRm~~~~~nA~~vA~~L~~hp~V~  312 (421)
T d2ctza1         259 KARVDGLRDQGQALGPFEAWVVLLGMET--------------LSLRAERHVENTLHLAHWLLEQPQVA  312 (421)
T ss_dssp             HHHHTHHHHHCCCCCHHHHHHHHHHHTT--------------HHHHHHHHHHHHHHHHHHHHTCTTEE
T ss_pred             HHHHHHHHhccCCCCHHHHHHHhcCCcc--------------hhhHHHHHHHHHHHHHhhhccCCCee
Confidence            111 11 124566788888877776642              45556667778888999999886653

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=99.72  E-value=7.8e-16  Score=154.74  Aligned_cols=325  Identities=10%  Similarity=0.053  Sum_probs=195.9

Q ss_pred             cCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHhccCCC
Q 009517          137 QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLIRSEN  215 (533)
Q Consensus       137 ~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~g  215 (533)
                      |..+|++|++++    ...   ...++...  ..++.+.+.+.+.+.+|  ++.. .|+++.|++.+++.++..+. .+|
T Consensus        25 P~~~~~~V~~Am----~~~---~~~hr~~e--f~~i~~~~r~~L~~ll~--~~~~~~i~~~gsgT~a~ea~~~~l~-~~~   92 (388)
T d2ch1a1          25 PSNCSKRVLTAM----TNT---VLSNFHAE--LFRTMDEVKDGLRYIFQ--TENRATMCVSGSAHAGMEAMLSNLL-EEG   92 (388)
T ss_dssp             SCCCCHHHHHHT----TSC---CCCTTCHH--HHHHHHHHHHHHHHHHT--CCCSCEEEESSCHHHHHHHHHHHHC-CTT
T ss_pred             CCCCCHHHHHHh----CcC---CCCCCCHH--HHHHHHHHHHHHHHHhC--CCCCeEEEEcCcHHHHHHHHHHHhc-ccc
Confidence            555688887764    221   12233321  33344444444444444  3334 45667789999999999998 789


Q ss_pred             CeEEEcCCcCcch--HHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHH
Q 009517          216 DGILCPIPQYPLY--SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQR  293 (533)
Q Consensus       216 d~Vlv~~p~~~~~--~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~  293 (533)
                      ++|++..-.+.+.  ...+..++...+.+...+..  ..+.+.+++.+...     +++++++++-+|.||...+   ++
T Consensus        93 ~~vl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-----~~~~v~~~~~~t~tG~~~~---~~  162 (388)
T d2ch1a1          93 DRVLIAVNGIWAERAVEMSERYGADVRTIEGPPDR--PFSLETLARAIELH-----QPKCLFLTHGDSSSGLLQP---LE  162 (388)
T ss_dssp             CEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTS--CCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CT
T ss_pred             ccccccccccccccchhhhhhhccccccccccccc--ccchhhhhhhhccC-----Ccceeeeeecccccccccc---hh
Confidence            9988887666553  34456678888887776543  56888888887765     8999999999999999999   88


Q ss_pred             HHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHH
Q 009517          294 AIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVR  373 (533)
Q Consensus       294 ~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~  373 (533)
                      +|.++|+++|.++++|.+++-..    .+ ..+    .      .....+++.|-.|.+.|++|.  |++..   .++.+
T Consensus       163 ~i~~~~~~~~~~~~vD~~ss~g~----~p-id~----~------~~~~d~~~~s~~K~~~gp~G~--g~~~~---~~~~~  222 (388)
T d2ch1a1         163 GVGQICHQHDCLLIVDAVASLCG----VP-FYM----D------KWEIDAVYTGAQKVLGAPPGI--TPISI---SPKAL  222 (388)
T ss_dssp             THHHHHHHTTCEEEEECTTTBTT----BC-CCT----T------TTTCCEEECCCC-CCCCCSSC--EEEEE---CHHHH
T ss_pred             hhcchhccccceeeeeeeecccc----cc-cch----h------ccCceEEEEccccccCCCCeE--EEEec---cHHHH
Confidence            88899999999999999998522    11 111    1      111236678888988666664  55554   77766


Q ss_pred             HHHHHhhh------------------------ccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 009517          374 EQIYKVAS------------------------VNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTL  429 (533)
Q Consensus       374 ~~l~~~~~------------------------~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  429 (533)
                      +.+.....                        ....++.....++...++.         ...........+.+......
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~---------~~~~~~~~~~~~~~~~~~~~  293 (388)
T d2ch1a1         223 DVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQ---------IAEEGLENQIKRRIECAQIL  293 (388)
T ss_dssp             HHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHH---------HHHHCHHHHHHHHHHHHHHH
T ss_pred             HhhhcccCccccccccchhhhhhhcccccccccCccchHHHHHHHHHHHHH---------HHHhhhHHHHHHHHHHHHHH
Confidence            65542110                        1122333333333333310         00111222333333444444


Q ss_pred             HHHHhcCCCceEecCC----ceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEE
Q 009517          430 EDAFNSLEGITCNKAE----GAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCT  505 (533)
Q Consensus       430 ~~~L~~~~g~~~~~~~----gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis  505 (533)
                      ...+... ++....+.    ....+.  +.+|.+         + +..++...+++++||.+.+|.+..   ..+.||||
T Consensus       294 ~~~~~~~-~~~~~~~~~~~rs~~v~~--~~~p~g---------~-~~~~l~~~l~~~~gI~v~~G~~~~---~~~~~RIs  357 (388)
T d2ch1a1         294 YEGLGKM-GLDIFVKDPRHRLPTVTG--IMIPKG---------V-DWWKVSQYAMNNFSLEVQGGLGPT---FGKAWRVG  357 (388)
T ss_dssp             HHHHHHH-TCCBSSCSGGGBCTTEEE--EECCTT---------C-CHHHHHHHHHHHHCBCCBCCCGGG---TTTEEEEE
T ss_pred             Hhhhhhc-ccccccCCHHHhCCeEEE--EECCCC---------C-CHHHHHHHHhhcCCEEEeCCCccc---cCCEEEEc
Confidence            5555443 22222111    111122  233322         2 234556677788899999986532   12389999


Q ss_pred             -ec--CCcCcHHHHHHHHHHHHHHHH
Q 009517          506 -IL--PQEDKIPAIVTRLTDFHKNFM  528 (533)
Q Consensus       506 -~~--~~~e~i~~~~~~l~~~l~~~~  528 (533)
                       ++  .+.|+|+.++++|+++|+...
T Consensus       358 ~~g~~~t~edI~~ll~alke~L~~~~  383 (388)
T d2ch1a1         358 IMGECSTVQKIQFYLYGFKESLKATH  383 (388)
T ss_dssp             CCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred             CCcCCCCHHHHHHHHHHHHHHHHhhC
Confidence             65  467899999999999998753

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=99.71  E-value=4.5e-15  Score=148.80  Aligned_cols=316  Identities=14%  Similarity=0.127  Sum_probs=204.5

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILC  220 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv  220 (533)
                      ..+.++++.+.+...    ...+..-.-..+|.+.+|++++        .+.++.+++|+.|+.++++++-.++||+|++
T Consensus        12 ~~~~~~~~~~~l~~g----~~~~~~g~~v~~fE~~~a~~~g--------~~~~v~~~SGt~Al~lal~~l~~~~gdeVi~   79 (384)
T d1b9ha_          12 DDAERNGLVRALEQG----QWWRMGGDEVNSFEREFAAHHG--------AAHALAVTNGTHALELALQVMGVGPGTEVIV   79 (384)
T ss_dssp             CHHHHHHHHHHHHTS----CCBTTTCSHHHHHHHHHHHHTT--------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEE
T ss_pred             CHHHHHHHHHHHHcC----CeeecCCHHHHHHHHHHHHHHC--------cCeEEEeCCHHHHHHHHHHHcCCCCCCEEEE
Confidence            567788888888862    2112222226788899998864        5578999999999999999873278999999


Q ss_pred             cCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHH
Q 009517          221 PIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK  300 (533)
Q Consensus       221 ~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~  300 (533)
                      |..+|.....++...|++++.++.++. ++.+|++.+++.+.+      ++++|++.+   ..|....   +.+|.++|+
T Consensus        80 p~~t~~a~~~ai~~~g~~p~~~d~~~~-~~~~d~~~~~~~i~~------~tk~i~~~~---~~g~~~d---~~~i~~~~~  146 (384)
T d1b9ha_          80 PAFTFISSSQAAQRLGAVTVPVDVDAA-TYNLDPEAVAAAVTP------RTKVIMPVH---MAGLMAD---MDALAKISA  146 (384)
T ss_dssp             ESSSCTHHHHHHHHTTCEEEEECBCTT-TCCBCHHHHHHHCCT------TEEEECCBC---GGGCCCC---HHHHHHHHH
T ss_pred             ecccccccccccccccccccccccccc-ccccchhhhcccccc------ccccccccc---ccccccc---cccchhhhh
Confidence            999999999999999999999998754 788999999999877      899987554   4455555   889999999


Q ss_pred             HcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecC--CccCCCCCCCeeEEEEEecCCHHHHHHHHH
Q 009517          301 KEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSV--SKGYYGECGKRGGYMEVTGFSAEVREQIYK  378 (533)
Q Consensus       301 ~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~--SK~~~gl~G~riG~v~~~~~~~~~~~~l~~  378 (533)
                      ++++++|+|.+++....-.+.+..   .        ..+   +.+.||  +|.+ +  .-..|.+++  .++++.+.+..
T Consensus       147 ~~~i~lieD~a~a~ga~~~g~~~g---~--------~g~---~~~~Sf~~~K~i-~--~g~GG~i~t--~~~~~~~~~~~  207 (384)
T d1b9ha_         147 DTGVPLLQDAAHAHGARWQGKRVG---E--------LDS---IATFSFQNGKLM-T--AGEGGAVVF--PDGETEKYETA  207 (384)
T ss_dssp             HHTCCBCEECTTCTTCEETTEEGG---G--------SSS---CEEEECCTTSSS-C--SSSCEEEEE--CTTCHHHHHHH
T ss_pred             hhhhhhhhhhceecccccCCEecC---c--------ccc---cceecccccccc-c--ccccchhhh--hhHHHHHHHHH
Confidence            999999999999764432221111   1        123   334454  7877 3  335787776  36777777665


Q ss_pred             hhhc------------------cccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Q 009517          379 VASV------------------NLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGIT  440 (533)
Q Consensus       379 ~~~~------------------~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~  440 (533)
                      +...                  .+..+.+.++++...|+              .+++..++-+++.+++.+.|++++++.
T Consensus       208 ~~~~g~~~~~~~~~~~~~~~G~n~rms~l~Aaig~~qL~--------------~ld~~~~~R~~~~~~y~~~L~~~~~i~  273 (384)
T d1b9ha_         208 FLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLA--------------RLDEQIAVRDERWTLLSRLLGAIDGVV  273 (384)
T ss_dssp             HHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHT--------------THHHHHHHHHHHHHHHHHHHHTSTTCE
T ss_pred             HHhcCCCCccccccccccccccccccccchhhhhhhhhh--------------hcccchhhhhhhhhhhhhhhhcccccc
Confidence            5321                  12234444444444443              233344444556677888888887765


Q ss_pred             EecC----C-ce--eEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCC----------CCCC-C-----
Q 009517          441 CNKA----E-GA--MYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSG----------FGQV-P-----  497 (533)
Q Consensus       441 ~~~~----~-gg--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~----------f~~~-~-----  497 (533)
                      ....    . ..  ++.+ .+.....           .....+.+.|+++||.+.+...          ++.. .     
T Consensus       274 ~~~~~~~~~~~~~~~~~~-~~~~~~~-----------~~Rd~l~~~L~~~GI~~~~~y~plh~~~~~~~~~~~~~~~~~~  341 (384)
T d1b9ha_         274 PQGGDVRADRNSHYMAMF-RIPGLTE-----------ERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAI  341 (384)
T ss_dssp             ECCCCTTCCBCCCSEEEE-ECTTCCH-----------HHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHH
T ss_pred             cccccccccccccccccc-eeccccc-----------ccHHHHHHHHHHCCCCeeeeCcchhcCHHHHhcCCCccccccc
Confidence            4321    1 11  2222 1221110           0111233556789998876422          0100 0     


Q ss_pred             ----------CCceEEEEec--CC-cCcHHHHHHHHHHHHHH
Q 009517          498 ----------GTWHFRCTIL--PQ-EDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       498 ----------g~~~iRis~~--~~-~e~i~~~~~~l~~~l~~  526 (533)
                                ..+.|.|-+.  ++ +++++..++.|++++++
T Consensus       342 ~~~~Pna~~l~~~~l~LP~~~~Lt~e~ei~~I~~~i~~~l~~  383 (384)
T d1b9ha_         342 ARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAVAR  383 (384)
T ss_dssp             HHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHhCEEEccCCCCCCCHHHHHHHHHHHHHHHhh
Confidence                      0124666653  56 46899999999988764

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.71  E-value=9.4e-15  Score=149.77  Aligned_cols=339  Identities=12%  Similarity=0.043  Sum_probs=219.6

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCC-------CCCEEEcCChHHHHHHHHHHhcc-
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPAD-------PNDIFLTDGASPAVHMMMQLLIR-  212 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~-------~~~i~~t~G~~~al~~~~~~l~~-  212 (533)
                      ++.++..+...+-+..   ...|.......++.+.+.+|+.+.+|.+-.       ...-++|+||++++..++.+.+. 
T Consensus        86 ~~~~l~~~~~~~~n~n---~~~~~~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~  162 (476)
T d1js3a_          86 YPAMLADMLCGAIGCI---GFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTK  162 (476)
T ss_dssp             HHHHHHHHHHHHHCCC---CSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccc---ccchhhhhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHH
Confidence            4556665555444422   233444444678999999999998886421       12458999999999999877641 


Q ss_pred             --------CCC---------CeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEE
Q 009517          213 --------SEN---------DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALV  275 (533)
Q Consensus       213 --------~~g---------d~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~ii  275 (533)
                              ..|         -.|++++-+|.....++...|..++.+|+++  ++.+|+++|++.|++....|..+-+|+
T Consensus       163 ~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H~Si~ka~~~lGl~~~~v~~d~--~~~md~~~L~~~i~~~~~~g~~p~~Vv  240 (476)
T d1js3a_         163 VVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDG--KFAMRASALQEALERDKAAGLIPFFVV  240 (476)
T ss_dssp             HHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECCCT--TSCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHhhcccccCcccccccCceEEEecccccHHHHHHHHhcCceEEEeccCC--CCCcCHHHHHHHHHHHHhcCCCcEEEe
Confidence                    011         1478888999999999999999999999865  569999999999999877777777888


Q ss_pred             EeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCC
Q 009517          276 VINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGE  355 (533)
Q Consensus       276 l~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl  355 (533)
                      .+..++.||.+=+   +++|+++|++||+|+.+|.+|.++..-... .   ......+.  ..|   -+..+++|.+ +.
T Consensus       241 ataGtt~~G~iDp---l~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~-~---~~~~~gi~--~aD---Sit~d~HK~l-~~  307 (476)
T d1js3a_         241 ATLGTTSCCSFDN---LLEVGPICHEEDIWLHVDAAYAGSAFICPE-F---RHLLNGVE--FAD---SFNFNPHKWL-LV  307 (476)
T ss_dssp             EEBSCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTGGGGGGSTT-T---GGGGTTGG--GCS---EEEECHHHHS-SC
T ss_pred             ecCCCccceeecc---HHHHHHHHHhcCcEEEEecccchhhhhhcc-h---hhhhcCCc--ccc---eeeecCcccc-cc
Confidence            8889999999988   999999999999999999999886542221 1   12222221  123   3355789987 43


Q ss_pred             CCCeeEEEEEecCCHHHHHHHHH--------hhh----------cc-ccC---ChHHHHHHHHHcCCCCCCChhHHHHHH
Q 009517          356 CGKRGGYMEVTGFSAEVREQIYK--------VAS----------VN-LCS---NISGQILASLVMSPPKVGDESYESYCA  413 (533)
Q Consensus       356 ~G~riG~v~~~~~~~~~~~~l~~--------~~~----------~~-~~~---~~~~q~a~~~~L~~~~~~~~~~~~~~~  413 (533)
                      | ...|+++.  .++........        ...          .+ .++   ..+...++...+            -.+
T Consensus       308 P-~~~g~~l~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~al~lw~~l~~~------------G~~  372 (476)
T d1js3a_         308 N-FDCSAMWV--KRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMY------------GVK  372 (476)
T ss_dssp             C-SSCEEEEE--SCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHH------------HHH
T ss_pred             C-Ccceeecc--cchHHHHHHHhcChhhhccccccccccccccccccccchhhHHHHHHHHHHHH------------hHh
Confidence            3 45777766  34443321100        000          00 011   122222222222            223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCceEec-CCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCC
Q 009517          414 ERDGILSSLARRAKTLEDAFNSLEGITCNK-AEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSG  492 (533)
Q Consensus       414 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~  492 (533)
                      .++++.++..+..+++.+.|++.|++++.. |.-+..+| ++..+...           ...+.+++.++-.+++.+.. 
T Consensus       373 g~~~~i~~~~~lA~~l~~~l~~~~~fel~~~p~l~iV~F-r~~~~d~~-----------n~~l~~~l~~~G~~~~s~t~-  439 (476)
T d1js3a_         373 GLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCF-RLKGSDGL-----------NEALLERINSARKIHLVPCR-  439 (476)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSSEEEE-EESSCHHH-----------HHHHHHHHHHHTSCBCEEEE-
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCceEEEEE-EccCChHH-----------HHHHHHHHHhcCCEEEeeee-
Confidence            456677777788889999999998998874 44444333 33322211           12334444433335555422 


Q ss_pred             CCCCCCCceEEEEec---CCcCcHHHHHHHHHHHHHHHH
Q 009517          493 FGQVPGTWHFRCTIL---PQEDKIPAIVTRLTDFHKNFM  528 (533)
Q Consensus       493 f~~~~g~~~iRis~~---~~~e~i~~~~~~l~~~l~~~~  528 (533)
                         -.|..++|+++.   .++++|+.+++.|++..+++.
T Consensus       440 ---~~g~~~lR~~i~n~~Tt~~did~~~~~i~~~a~~ll  475 (476)
T d1js3a_         440 ---LRGQFVLRFAICSRKVESGHVRLAWEHIRGLAAELL  475 (476)
T ss_dssp             ---ETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ---ECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence               234458999985   567789999999999888764

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=99.70  E-value=9.7e-16  Score=153.34  Aligned_cols=323  Identities=14%  Similarity=0.138  Sum_probs=196.5

Q ss_pred             cCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCC
Q 009517          137 QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND  216 (533)
Q Consensus       137 ~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd  216 (533)
                      |..+|+.|++++    ...   ..+++...  ..++.+.+.+.+.+.+|.+ +...|+++.|++++++.++..+. .+|+
T Consensus        26 P~~v~~~Vl~am----~~~---~~~hr~~e--f~~i~~~~r~~l~~ll~~~-~~~~i~~~g~gT~~~~~~~~~~~-~~~~   94 (377)
T d1vjoa_          26 PSNAHPSVLQAM----NVS---PVGHLDPA--FLALMDEIQSLLRYVWQTE-NPLTIAVSGTGTAAMEATIANAV-EPGD   94 (377)
T ss_dssp             CCCCCHHHHHHH----SSC---CCCTTSHH--HHHHHHHHHHHHHHHHTCC-CSCEEEESSCHHHHHHHHHHHHC-CTTC
T ss_pred             CCCCCHHHHHHh----CcC---CCCCCCHH--HHHHHHHHHHHHHHHhCCC-CCeEEEEcCcHHHHHHHHHHhcc-cccc
Confidence            556688887664    221   12233321  3334444444444444422 23467778889999999999998 7889


Q ss_pred             eEEEcCCcCcch--HHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHH
Q 009517          217 GILCPIPQYPLY--SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRA  294 (533)
Q Consensus       217 ~Vlv~~p~~~~~--~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~  294 (533)
                      ++++..-.+...  .......+.....+.....  -..+.+..+......     +++.+.+++.+|.||+..+   +++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~tg~~~~---i~~  164 (377)
T d1vjoa_          95 VVLIGVAGYFGNRLVDMAGRYGADVRTISKPWG--EVFSLEELRTALETH-----RPAILALVHAETSTGARQP---LEG  164 (377)
T ss_dssp             EEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT--CCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTT
T ss_pred             ccceeeechhhhhhhhhhhhhcccccccccCCC--CcccchhhhhhhhcC-----cceeeeeeeeeccceeeec---hhh
Confidence            888877666543  3344445666666555443  245666666666554     7889999999999999999   999


Q ss_pred             HHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHH
Q 009517          295 IVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVRE  374 (533)
Q Consensus       295 i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~  374 (533)
                      |.++|+++|.++++|.+++-...    + .++    .++   ..+   +++.|..|.+.|.+|  +|++..   .+..++
T Consensus       165 i~~~~~~~g~~~~vDa~~~~g~~----~-~~~----~~~---~~d---~~~~s~~K~~~gp~g--~~~~~~---~~~~~~  224 (377)
T d1vjoa_         165 VGELCREFGTLLLVDTVTSLGGV----P-IFL----DAW---GVD---LAYSCSQKGLGCSPG--ASPFTM---SSRAIE  224 (377)
T ss_dssp             HHHHHHHHTCEEEEECTTTTTTS----C-CCT----TTT---TCS---EEECCSSSTTCSCSS--CEEEEE---CHHHHH
T ss_pred             hhhhhhhccceEEEecchhhhhh----h-hcc----ccc---ccc---eeeecccccccCCCE--EEEecc---hhhHHh
Confidence            99999999999999999964221    1 111    111   233   667888898855444  455555   777766


Q ss_pred             HHHHhhh--------------------ccc-cCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009517          375 QIYKVAS--------------------VNL-CSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAF  433 (533)
Q Consensus       375 ~l~~~~~--------------------~~~-~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L  433 (533)
                      .......                    .+. .++.....++..++.         .......+.+.++.+++.+++++.|
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~g~~~~~~~~~~~~~~l~~~l  295 (377)
T d1vjoa_         225 KLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALR---------LIAQEGLANCWQRHQKNVEYLWERL  295 (377)
T ss_dssp             HHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHH---------HHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhccCCCCcceeeccchhhhccCcccccccccceechhhhHHHHh---------hhhhcCchHHHHHHHHHhhhhhhhh
Confidence            5543211                    111 122222222222221         0111224566667778888899999


Q ss_pred             hcCCCceEecCC---ceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEe-c--
Q 009517          434 NSLEGITCNKAE---GAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTI-L--  507 (533)
Q Consensus       434 ~~~~g~~~~~~~---gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~-~--  507 (533)
                      .+. ++..+.+.   ....+.  +.+|++         + +...++..+++++||.+..|....   ..+.||||. +  
T Consensus       296 ~~~-~~~~~~~~~~rs~~v~~--~~~p~~---------~-~~~~l~~~L~~~~gI~v~~G~~~~---~~~~~Ris~~g~~  359 (377)
T d1vjoa_         296 EDI-GLSLHVEKEYRLPTLTT--VCIPDG---------V-DGKAVARRLLNEHNIEVGGGLGEL---AGKVWRVGLMGFN  359 (377)
T ss_dssp             HHT-TCCBSSCGGGBCSSEEE--EECCTT---------C-CHHHHHHHHHHHHCEECEECCGGG---TTTEEEEECCGGG
T ss_pred             hcc-CceeecChHhcCCeEEE--EECCCC---------C-CHHHHHHHHHhcCCEEEecCcccc---cCCEEEEecCcCC
Confidence            876 55443221   111122  122221         1 245566677788899999886542   223899994 5  


Q ss_pred             CCcCcHHHHHHHHHHHHH
Q 009517          508 PQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       508 ~~~e~i~~~~~~l~~~l~  525 (533)
                      .+.|+|++++++|+++++
T Consensus       360 ~t~edi~~lv~al~~~l~  377 (377)
T d1vjoa_         360 SRKESVDQLIPALEQVLR  377 (377)
T ss_dssp             CSHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHhC
Confidence            567889999999998874

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.70  E-value=8e-16  Score=151.94  Aligned_cols=319  Identities=13%  Similarity=0.093  Sum_probs=199.7

Q ss_pred             cCCCCHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCC
Q 009517          137 QGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEND  216 (533)
Q Consensus       137 ~~~~p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd  216 (533)
                      |..+|++|++++.+..-       .++.+  -..++.+.+.+.+.+.++  .+.+.++++.|++.+++.++..++ .+|+
T Consensus         8 P~~v~~~V~~am~~~~~-------~hr~~--~f~~i~~~~~~~l~~ll~--~~~~~i~~~gsgT~a~e~~~~nl~-~~g~   75 (348)
T d1iuga_           8 PVRLHPKALEALARPQL-------HHRTE--AAREVFLKARGLLREAFR--TEGEVLILTGSGTLAMEALVKNLF-APGE   75 (348)
T ss_dssp             SCCCCHHHHHHHHSCCC-------CTTSH--HHHHHHHHHHHHHHHHHT--CSSEEEEEESCHHHHHHHHHHHHC-CTTC
T ss_pred             CCCCCHHHHHHhcCCCC-------CCCCH--HHHHHHHHHHHHHHHHhC--CCCCEEEEeCchHHHHHHHHHhcc-cccc
Confidence            44457888777643221       11221  144455555555555555  455678889999999999999998 7899


Q ss_pred             eEEEcCCcCcc--hHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHH
Q 009517          217 GILCPIPQYPL--YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRA  294 (533)
Q Consensus       217 ~Vlv~~p~~~~--~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~  294 (533)
                      +|++..-.+.+  +...++.+|..+..+......  .++++.+.         ..+++.+++++..+.||+..+   +++
T Consensus        76 ~vlv~~~G~f~~~~~~~a~~~~~~~~~~~~~~g~--~~~~~~~~---------~~~~~~v~~~h~eTstG~~~~---i~~  141 (348)
T d1iuga_          76 RVLVPVYGKFSERFYEIALEAGLVVERLDYPYGD--TPRPEDVA---------KEGYAGLLLVHSETSTGALAD---LPA  141 (348)
T ss_dssp             EEEEEECSHHHHHHHHHHHHTTCEEEEEECCTTC--CCCTTTSC---------CSSCSEEEEESEETTTTEECC---HHH
T ss_pred             cceeecchHHHHHHHHHHHhcCcccccccccCCC--cccccccc---------ccCCCeeEEEecchhhhhhcc---HHH
Confidence            88887766443  456777889888888776543  33433321         127889999999999999999   888


Q ss_pred             HHHHHHHcC--CEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHH
Q 009517          295 IVDFCKKEG--LVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEV  372 (533)
Q Consensus       295 i~~l~~~~~--~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~  372 (533)
                      |.++|++++  .++++|.+.+-...    + .++    ..+   .-|   +++.|-.|++.|+||+  |++++   +++.
T Consensus       142 i~~~~~~~~~~~l~~vDavss~g~~----~-i~~----d~~---~iD---~~~~~sqK~l~gppG~--~~v~~---s~~~  201 (348)
T d1iuga_         142 LARAFKEKNPEGLVGADMVTSLLVG----E-VAL----EAM---GVD---AAASGSQKGLMCPPGL--GFVAL---SPRA  201 (348)
T ss_dssp             HHHHHHHHCTTCEEEEECTTTBTTB----C-CCS----GGG---TCS---EEEEESSSTTCCCSCE--EEEEE---CHHH
T ss_pred             HHHHHHhhhccceeechhhhccccc----c-ccc----ccc---cCC---EEEeccccceecCCce--eeeee---chHH
Confidence            888998874  78899998874221    1 111    111   123   6677889999788875  67766   7776


Q ss_pred             HHHHHH------------hh---hccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 009517          373 REQIYK------------VA---SVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLE  437 (533)
Q Consensus       373 ~~~l~~------------~~---~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  437 (533)
                      ++.++.            ..   ...++++....+++..+|+.          ..++..+..+..+..+..+++.+++. 
T Consensus       202 le~~~~~~~~~dl~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~-  270 (348)
T d1iuga_         202 LERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEE----------VLPRLEEHLALKAWQNALLYGVGEEG-  270 (348)
T ss_dssp             HHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHH----------HGGGHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             HhhhcccccccchhhhhhhhccCcccccccchHHHHHHHHHHH----------HHHHHhHHHHHHHHHHHHHhhhhhhh-
Confidence            654321            11   13355666666677666631          11112222222333344566665665 


Q ss_pred             CceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEe-c-CCcCcHHH
Q 009517          438 GITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTI-L-PQEDKIPA  515 (533)
Q Consensus       438 g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~-~-~~~e~i~~  515 (533)
                      |+...+..-.. ..+-+.+|.+         + +...+ ...|+++||.+.+|..-   -....|||+. + .+.++++.
T Consensus       271 gl~~~~~~~s~-~v~~~~~P~g---------~-~~~~~-~~~l~~~gi~i~~G~~~---l~~~~~RIg~mG~~~~~d~~~  335 (348)
T d1iuga_         271 GLRPVPKRFSP-AVAAFYLPEG---------V-PYARV-KEAFAQRGAVIAGGQGP---LKGKVFRLSLMGAYDRYEALG  335 (348)
T ss_dssp             TCEESCSSBCT-TCEEEECCTT---------C-CHHHH-HHHHHTTTEECEECCGG---GTTTEEEECCCSSCCHHHHHH
T ss_pred             hhccChhhcCC-eEEEEECCCC---------C-CHHHH-HHHHHHCCeEEEcCccc---cCCCEEEEeCCCCCCHHHHHH
Confidence            77765432111 1111344432         2 23333 46678899999988532   2223899987 3 78889999


Q ss_pred             HHHHHHHHHHHH
Q 009517          516 IVTRLTDFHKNF  527 (533)
Q Consensus       516 ~~~~l~~~l~~~  527 (533)
                      +++.|+++++++
T Consensus       336 ~~~~l~~~l~~~  347 (348)
T d1iuga_         336 VAGMFREVLEEI  347 (348)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999999875

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.68  E-value=1.5e-14  Score=141.05  Aligned_cols=328  Identities=13%  Similarity=0.082  Sum_probs=211.5

Q ss_pred             CHHHHHHHHHHHhcCCCCC---ccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCe
Q 009517          141 SADSIERAWQILDQIPGRA---TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDG  217 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~---~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~  217 (533)
                      ++.|.++....+.+.+...   ...|.-..-+.++.+...+...+.||  ...-+|-.. +++.|...++.+++ +|||+
T Consensus        36 S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~--a~~anVqp~-SGs~An~av~~all-~pGD~  111 (405)
T d1kl1a_          36 SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFG--AEHANVQPH-SGAQANMAVYFTVL-EHGDT  111 (405)
T ss_dssp             CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHC--CSEEECCCS-SHHHHHHHHHHHHC-CTTCE
T ss_pred             CHHHHHHhcCcccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHHhC--CCcceeecc-CchHHHHHHHHHhc-CCCCE
Confidence            5777777766665432110   11133333344455445566666666  333345544 45677888888888 89999


Q ss_pred             EEEcCCcCcchHH-----HHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHH
Q 009517          218 ILCPIPQYPLYSA-----SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQ  292 (533)
Q Consensus       218 Vlv~~p~~~~~~~-----~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l  292 (533)
                      |+..++...+|..     .+.....+.+.|+++++ ++.+|.+++++.++..     ++++|++-.-.+|--  ++   +
T Consensus       112 im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~-~~~ID~d~l~~~a~~~-----kPklIi~G~S~y~r~--~d---~  180 (405)
T d1kl1a_         112 VLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPE-THVIDYDDVREKARLH-----RPKLIVAAASAYPRI--ID---F  180 (405)
T ss_dssp             EEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCTT-TCSBCHHHHHHHHHHH-----CCSEEEECCSSCCSC--CC---H
T ss_pred             EEEeecccccccccCccccccceEEEEEEeccchh-cccccHHHHHHHHHhh-----CcceEEecccccccc--cC---h
Confidence            9999987776542     22334578888898865 6789999999999997     899888765555533  33   8


Q ss_pred             HHHHHHHHHcCCEEEEcccc-ccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHH
Q 009517          293 RAIVDFCKKEGLVLLADEVY-QENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAE  371 (533)
Q Consensus       293 ~~i~~l~~~~~~~lI~De~y-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~  371 (533)
                      +++.++|++.|.+++.|-++ .+++-+|.  +++...        +.|   |+..|..|+|   +|-|.|.+.+   +.+
T Consensus       181 ~~~reIad~vga~l~~D~aH~~GLIa~g~--~~~P~~--------~aD---vvt~tThKtl---rGPrgg~I~~---~~~  241 (405)
T d1kl1a_         181 AKFREIADEVGAYLMVDMAHIAGLVAAGL--HPNPVP--------YAH---FVTTTTHKTL---RGPRGGMILC---QEQ  241 (405)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTHHHHHTTS--SCCSTT--------TCS---EEEEESSSTT---CCCSCEEEEE---CHH
T ss_pred             HHHHHHHhhhCCEEecchhhHhhhhhhhh--cCChhh--------hhh---heeccccccc---cCCCCceEEe---cch
Confidence            99999999999999999997 55555442  222111        245   6688999998   3889999988   888


Q ss_pred             HHHHHHHhhhccccCChHH-H-HHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecC-Ccee
Q 009517          372 VREQIYKVASVNLCSNISG-Q-ILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKA-EGAM  448 (533)
Q Consensus       372 ~~~~l~~~~~~~~~~~~~~-q-~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~-~gg~  448 (533)
                      +.+.+.+..-....++++. . ++.+.++.         +.+..+.+.-.++..++++.|.+.|.+. |++++.. .-..
T Consensus       242 ~~~~i~~avfPg~qggp~~~~iAa~Aval~---------Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~-G~~vv~ggTd~H  311 (405)
T d1kl1a_         242 FAKQIDKAIFPGIQGGPLMHVIAAKAVAFG---------EALQDDFKAYAKRVVDNAKRLASALQNE-GFTLVSGGTDNH  311 (405)
T ss_dssp             HHHHHHHHHTTTTCSSCCHHHHHHHHHHHH---------HHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSS
T ss_pred             hHHHHHhhhCcccccCcchhHHHHHHHHHH---------HHhChHHHHHHHHHHHHHHHHHHHHhcC-CceeecCCCccc
Confidence            8888776543223233222 2 22222221         1122344556667788888999999998 9998753 3344


Q ss_pred             EEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEE----cCCCCCCCCCCceEEEEec------CCcCcHHHHHH
Q 009517          449 YLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLV----PGSGFGQVPGTWHFRCTIL------PQEDKIPAIVT  518 (533)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~----pg~~f~~~~g~~~iRis~~------~~~e~i~~~~~  518 (533)
                      .+|+++..          .+.  .-..+.++|++.||.+.    |+..-. +-....|||...      ..+++++++.+
T Consensus       312 ~vlvdl~~----------~~~--~g~~ae~~Le~agI~~Nkn~iP~d~~~-~~~~SGiRiGT~a~TtrG~~e~dm~~ia~  378 (405)
T d1kl1a_         312 LLLVDLRP----------QQL--TGKTAEKVLDEVGITVNKNTIPYDPES-PFVTSGIRIGTAAVTTRGFGLEEMDEIAA  378 (405)
T ss_dssp             EEEEECGG----------GTC--CHHHHHHHHHHHTEECEECCCTTCSSC-TTTCSEEEEECHHHHHTTCCHHHHHHHHH
T ss_pred             eeeccccc----------cCC--cHHHHHHHHHHcCeEEcCCcCCCCCCC-CCCCCceeecCHHHHhCCCCHHHHHHHHH
Confidence            56665541          112  22335678999999886    432110 111236999982      67788999999


Q ss_pred             HHHHHHH
Q 009517          519 RLTDFHK  525 (533)
Q Consensus       519 ~l~~~l~  525 (533)
                      -|.++++
T Consensus       379 ~I~~~l~  385 (405)
T d1kl1a_         379 IIGLVLK  385 (405)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9988884

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=3.8e-15  Score=151.85  Aligned_cols=345  Identities=10%  Similarity=-0.056  Sum_probs=218.0

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCC---CEEEcCChHHHHHHHHHHhcc-----
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPN---DIFLTDGASPAVHMMMQLLIR-----  212 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~---~i~~t~G~~~al~~~~~~l~~-----  212 (533)
                      ++++.+.+.+.+.+.    ...+.......++.+.+.+++.+.+|.+....   .=.+|+|+++|+.+++.++..     
T Consensus        67 ~~~~~~l~~~~~~~N----~~~~~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~  142 (450)
T d1pmma_          67 DENVHKLMDLSINKN----WIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKR  142 (450)
T ss_dssp             CHHHHHHHHHTTTCB----TTCTTTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhcC----CCCcccCccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHHHH
Confidence            677776666666552    22222223357888889999988888653322   248999999999998887641     


Q ss_pred             ------CCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccC
Q 009517          213 ------SENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV  286 (533)
Q Consensus       213 ------~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~  286 (533)
                            .....++++...+..+..+++..|++++.++.++. ++.+|+++|++++++      ++.+|+.+.++|.||.+
T Consensus       143 ~~~~g~~~~~~~~~~~~~H~s~~Kaa~~~gi~~~~v~~~~~-~~~~d~~~L~~~i~~------~t~~Vv~t~gtt~tG~~  215 (450)
T d1pmma_         143 MEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIPMRPG-QLFMDPKRMIEACDE------NTIGVVPTFGVTYTGNY  215 (450)
T ss_dssp             HHHHTCCCSCCEEEESSCCHHHHHHHHHTTCEEEECCCBTT-BCSCCHHHHHHHCCT------TEEEEECBBSCTTTCBB
T ss_pred             hhhcCCCCCCceEEecccHHHHHHHHHHcCCCceEeeecCC-CCcCcHHHHHHHhhh------CceEEEeeeeeccCCCc
Confidence                  12245888888898999999999999999998864 689999999999987      79999988999999999


Q ss_pred             CCHHHHHHHHH---HHHHcCCEEEEcccccccc--ccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeE
Q 009517          287 LAEENQRAIVD---FCKKEGLVLLADEVYQENV--YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGG  361 (533)
Q Consensus       287 ~s~~~l~~i~~---l~~~~~~~lI~De~y~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG  361 (533)
                      -+.+.+.+|++   +|+++|+++.+|.+|.++.  |........     ..    .+... -+..|.+|.+.  .-..+|
T Consensus       216 dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~~~-----~~----~~~aD-Si~~s~HK~~~--~p~g~g  283 (450)
T d1pmma_         216 EFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWD-----FR----LPRVK-SISASGHKFGL--APLGCG  283 (450)
T ss_dssp             CCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCS-----TT----STTEE-EEEEETTTTTC--CCSSCE
T ss_pred             cccchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhhhhh-----hc----cccee-EeecChhhccC--CCCCee
Confidence            99776555544   4677899999999998754  222111110     01    12322 44678899753  346689


Q ss_pred             EEEEecCCHHHHHHHHHhh---------hccccCC-hHHHHH-HHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 009517          362 YMEVTGFSAEVREQIYKVA---------SVNLCSN-ISGQIL-ASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLE  430 (533)
Q Consensus       362 ~v~~~~~~~~~~~~l~~~~---------~~~~~~~-~~~q~a-~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  430 (533)
                      |++.  .+++.........         ..+...+ +..+.+ ....+.         ..-.+..+++.++..+..+++.
T Consensus       284 ~l~~--r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l~---------~~G~~G~~~~~~~~~~la~~l~  352 (450)
T d1pmma_         284 WVIW--RDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFL---------RLGREGYTKVQNASYQVAAYLA  352 (450)
T ss_dssp             EEEE--SSGGGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEe--cChhhhhhhcccccCcCCCCcCCCcccCccchHHHHHHHHHHh---------hhhHHHHHHHHHHHHHHHHHHH
Confidence            9887  3444322111100         0111111 111211 111111         0122346677788888899999


Q ss_pred             HHHhcCCCceEecC---Cc--eeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCC-CCCCCCceEEE
Q 009517          431 DAFNSLEGITCNKA---EG--AMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGF-GQVPGTWHFRC  504 (533)
Q Consensus       431 ~~L~~~~g~~~~~~---~g--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f-~~~~g~~~iRi  504 (533)
                      +.|++.+++.++.+   ..  ....| ++..+.       ..++ +... +...|.++|..|.. ..+ ....+...+|+
T Consensus       353 ~~L~~~~~~el~~~~~p~~~l~~V~F-r~~~~~-------~~~~-~~~~-l~~~L~~~Gw~v~~-~~~p~~~~~~~~lRv  421 (450)
T d1pmma_         353 DEIAKLGPYEFICTGRPDEGIPAVCF-KLKDGE-------DPGY-TLYD-LSERLRLRGWQVPA-FTLGGEATDIVVMRI  421 (450)
T ss_dssp             HHHHTTSCEEEEEECCTTTBSSEEEE-EECTTC-------CCSS-CHHH-HHHHHHTTTCBCCE-EECCTTCTTCEEEEE
T ss_pred             HHHHhCCCeEEEeCCCCCCceEEEEE-ecCCcc-------cCCC-CHHH-HHHHHHHcCCeeec-cCcCCCcCCcEEEEE
Confidence            99999988887642   22  22332 222110       0011 1223 34667788975531 111 11123347999


Q ss_pred             Eec--CCcCcHHHHHHHHHHHHHHHHHH
Q 009517          505 TIL--PQEDKIPAIVTRLTDFHKNFMDK  530 (533)
Q Consensus       505 s~~--~~~e~i~~~~~~l~~~l~~~~~~  530 (533)
                      .+.  .+.+.++++++.|+++++.++++
T Consensus       422 vv~~~~t~e~~d~lv~dl~~~v~~l~~~  449 (450)
T d1pmma_         422 MCRRGFEMDFAELLLEDYKASLKYLSDH  449 (450)
T ss_dssp             ECCTTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EccCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            995  78888999999999999998763

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=4.4e-14  Score=139.84  Aligned_cols=209  Identities=12%  Similarity=0.100  Sum_probs=151.1

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHH----hCCeEEEEec
Q 009517          169 IKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIAL----HGGTLVPYYL  244 (533)
Q Consensus       169 ~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~----~g~~~~~v~~  244 (533)
                      ...|.++++++-    |    .+..+++++|+.|+..++ .++ .+||.|++....|.+....+..    .|.++..+. 
T Consensus        57 ~~~lE~~la~LE----~----~~~a~~~sSGmaAi~~~l-~~l-~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~~~~~-  125 (393)
T d1n8pa_          57 RENLERAVAALE----N----AQYGLAFSSGSATTATIL-QSL-PQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTN-  125 (393)
T ss_dssp             HHHHHHHHHHHT----T----CSEEEEESCHHHHHHHHH-HTS-CSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEES-
T ss_pred             HHHHHHHHHHHh----C----CceEEEecCchhHHHhhh-hcc-cCCCeeeeeeeecccchhhhhhhhhcccceeEEee-
Confidence            345555555553    2    456788888899997665 455 6899999999999886665554    466655543 


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHH----HcCCEEEEccccccccccCC
Q 009517          245 DEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCK----KEGLVLLADEVYQENVYVPE  320 (533)
Q Consensus       245 ~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~----~~~~~lI~De~y~~~~~~~~  320 (533)
                             .+.+++++++++      ++++|+++.|.||+..+.+   +++|+++|+    ++|+++|+|..+..-.+.  
T Consensus       126 -------~~~~~~~~~i~~------~t~lv~~EspsNP~l~v~D---i~~ia~~a~~~~~~~g~~lvVDnT~atP~~~--  187 (393)
T d1n8pa_         126 -------DLLNDLPQLIKE------NTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPYIS--  187 (393)
T ss_dssp             -------SHHHHHHHHSCS------SEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHHHC--
T ss_pred             -------cchHHHHHHhhh------hcceeEecCcchhhhhccc---hhhhhhhhhhhcccCCceEEEecCccCcccC--
Confidence                   246788888876      8999999999999999999   888888888    678999999999653321  


Q ss_pred             CCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-ccccCChHHHHHHHHHcC
Q 009517          321 KKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQIYKVAS-VNLCSNISGQILASLVMS  399 (533)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~~L~  399 (533)
                      .|      +  ++   ..|   |++.|++|.++|-...-.|.++.  .++++.+.++..+. .....++..+..+..-|+
T Consensus       188 ~P------l--~~---GAD---iVvhS~TKyi~GhsDv~~G~v~~--~~~~~~~~l~~~~~~~G~~~~p~~a~ll~rgl~  251 (393)
T d1n8pa_         188 NP------L--NF---GAD---IVVHSATKYINGHSDVVLGVLAT--NNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLK  251 (393)
T ss_dssp             CG------G--GG---TCS---EEEEETTTTTTCSSCCCCEEEEE--SCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT
T ss_pred             Cc------h--hh---CCC---EEEEccccccCCCCccccceeee--cchhHHHHHHHHHhhcCCCCChHHHHHHHhCCc
Confidence            11      1  11   245   88999999997765688888776  36777777876665 556678888777777664


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 009517          400 PPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL  436 (533)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  436 (533)
                      .              +..+.++..++...+.+.|+..
T Consensus       252 T--------------l~lR~~~~~~nA~~lA~~L~~~  274 (393)
T d1n8pa_         252 T--------------LHLRVRQAALSANKIAEFLAAD  274 (393)
T ss_dssp             T--------------HHHHHHHHHHHHHHHHHHHTSC
T ss_pred             c--------------hhhHHHHHHHHHHHHHHHHHhc
Confidence            2              3445556667777888888653

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=5e-15  Score=152.62  Aligned_cols=328  Identities=16%  Similarity=0.171  Sum_probs=195.7

Q ss_pred             ccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCe---------EEEcCCcCcchHH
Q 009517          160 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDG---------ILCPIPQYPLYSA  230 (533)
Q Consensus       160 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~---------Vlv~~p~~~~~~~  230 (533)
                      ...|.......+|+++++++++        .+.++++++|++|+..++++++ .+|+.         +......|.....
T Consensus        67 d~~Y~~~~~~~~le~~~a~l~G--------~~~~~~~~sGt~A~~~a~~~~~-~~g~~~~~~~~~~~i~~~~~~~~~~~~  137 (467)
T d2v1pa1          67 DEAFSGSRSYYALAESVKNIFG--------YQYTIPTHQGRGAEQIYIPVLI-KKREQEKGLDRSKMVAFSNYFFDTTQG  137 (467)
T ss_dssp             CCCSSSCHHHHHHHHHHHHHTC--------CSEEEEECSSTTTHHHHHHHHH-HHHHHHHCCCTTTCEEEESSCCHHHHH
T ss_pred             chhhcCCchHHHHHHHHHHHHC--------CCEEEECCCCHHHHHHHHHHHh-hccceEecCCCCcEEEEecccccccHH
Confidence            3468877778899999999864        5678999999999999999987 44443         4455555555666


Q ss_pred             HHHHhCCeEEEEecCCCC--------CCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCC-ccCCCHHHHHHHHHHHHH
Q 009517          231 SIALHGGTLVPYYLDEAT--------GWGLETSEVKKQLEAAKAKGITVRALVVINPGNPT-GQVLAEENQRAIVDFCKK  301 (533)
Q Consensus       231 ~~~~~g~~~~~v~~~~~~--------~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPt-G~~~s~~~l~~i~~l~~~  301 (533)
                      .....|..++.++.+...        ...+|++.+++.+++...  ..++++++.+.+|.. |.+++.+++++|.++|++
T Consensus       138 ~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~--~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~  215 (467)
T d2v1pa1         138 HSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGP--NNVPYIVATITSNSAGGQPVSLANLKAMYSIAKK  215 (467)
T ss_dssp             HHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCG--GGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHH
T ss_pred             HHHHcCCeeeecccccccccccccccccCCCHHHHHHHHhhcCc--cccceeeecceeeccccccCCHHHHHHHHHHHHH
Confidence            778889999888766421        345799999999987522  146778888887754 678899999999999999


Q ss_pred             cCCEEEEcccccccc-cc-----CCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHHHHHH
Q 009517          302 EGLVLLADEVYQENV-YV-----PEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAEVREQ  375 (533)
Q Consensus       302 ~~~~lI~De~y~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~~~~~  375 (533)
                      ||+++|+|+++.... +.     ......++.....++.. +.+   ++..|.+|.+   .|...|++..  .++.+...
T Consensus       216 ~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~d---~~s~s~~K~~---~~~~gg~i~~--~~~~~~~~  286 (467)
T d2v1pa1         216 YDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYK-YAD---MLAMSAKKDA---MVPMGGLLCM--KDDSFFDV  286 (467)
T ss_dssp             TTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGG-GCS---EEEEESSSTT---CCSSCEEEEE--CSGGGHHH
T ss_pred             cCCEEEEechhhhccccccccccccccCCcccccchhhcc-cCC---EEEecCCCCC---CCCCceeEEe--cchhhhhH
Confidence            999999999974210 00     00112233333333321 234   4456778876   3556677766  23333333


Q ss_pred             HHHhh------h--ccc-cCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecCCc
Q 009517          376 IYKVA------S--VNL-CSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEG  446 (533)
Q Consensus       376 l~~~~------~--~~~-~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~g  446 (533)
                      .....      .  .+. +.......++...+..            .......++..++.+++.+.|.+. ++.+.++.+
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~------------~~~~~~~~~~~~~~~~l~~~L~~~-~~~v~~~~~  353 (467)
T d2v1pa1         287 YTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYD------------GMNLDWLAYRIAQVQYLVDGLEEI-GVVCQQAGG  353 (467)
T ss_dssp             HHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHH------------TTCHHHHHHHHHHHHHHHHHHHHT-TCCEEEECS
T ss_pred             HHhhcccccccccCcchhhhHHHHHHHHHHHhHH------------hhhHHHHHHHHHHHHHHHHHHHhc-CCcccCCCc
Confidence            22211      1  111 2222333333322211            111233344456677888999887 555444333


Q ss_pred             eeEEe-cccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCC----------CCCCCCceEEEEec---CCcCc
Q 009517          447 AMYLF-PRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGF----------GQVPGTWHFRCTIL---PQEDK  512 (533)
Q Consensus       447 g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f----------~~~~g~~~iRis~~---~~~e~  512 (533)
                      ....+ ...-++...     .. .......+.+++.+.||.......+          ........+|+++.   .|+|+
T Consensus       354 ~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~ll~~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vRlaip~~~~T~ee  427 (467)
T d2v1pa1         354 HAAFVDAGKLLPHIP-----AD-QFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTH  427 (467)
T ss_dssp             SCEEEEHHHHSTTSC-----GG-GCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTCCHHH
T ss_pred             cceeecchhhcCCcc-----hh-hhhhHHHHHHHHHHcCCeeecccccccccccccCCccCCCcceEEEecCCCCCCHHH
Confidence            22221 111111100     00 0112334557778889865422111          11223347999873   58899


Q ss_pred             HHHHHHHHHHHHHH
Q 009517          513 IPAIVTRLTDFHKN  526 (533)
Q Consensus       513 i~~~~~~l~~~l~~  526 (533)
                      |++++++|++++++
T Consensus       428 iD~vv~~l~~v~~~  441 (467)
T d2v1pa1         428 MDFIIEAFKHVKEN  441 (467)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998764

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=1.8e-13  Score=134.05  Aligned_cols=331  Identities=14%  Similarity=0.093  Sum_probs=207.2

Q ss_pred             CHHHHHHHHHHHhcCCCCC---ccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCe
Q 009517          141 SADSIERAWQILDQIPGRA---TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDG  217 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~---~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~  217 (533)
                      ++.|.++....+.+....+   ...|.-.+-+.++.+...+...+.||  ...-+|-. .+++.|...++.+++ +|||+
T Consensus        39 S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~--a~~anVqp-~SGs~AN~av~~All-~pGD~  114 (416)
T d1dfoa_          39 SPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFG--ADYANVQP-HSGSQANFAVYTALL-EPGDT  114 (416)
T ss_dssp             CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT--CSEEECCC-SSHHHHHHHHHHHHC-CTTCE
T ss_pred             CHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHHhC--CCcceeec-ccCccHHHHHHHHhc-CCCCe
Confidence            5777777666665432210   11233333234444444455555666  33334444 556688888888898 89999


Q ss_pred             EEEcCCcCcchHH-----HHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHH
Q 009517          218 ILCPIPQYPLYSA-----SIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQ  292 (533)
Q Consensus       218 Vlv~~p~~~~~~~-----~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l  292 (533)
                      |+..+....+|..     .+.....+.++++++.  +..+|.+++++.++..     ++|+|++-.-.+|  ..++   +
T Consensus       115 Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~--~~~IDyd~l~~~a~~~-----kPklIi~G~S~y~--r~~d---~  182 (416)
T d1dfoa_         115 VLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDA--TGHIDYADLEKQAKEH-----KPKMIIGGFSAYS--GVVD---W  182 (416)
T ss_dssp             EEEECTTTTCCGGGTCTTSHHHHHSEEEEECBCS--SSSBCHHHHHHHHHHH-----CCSEEEEECSSCC--SCCC---H
T ss_pred             eeeccccccccccccccccccCceEEEEecccCC--ccCccHHHHHHHHHHh-----ccceEEecccccc--cccC---H
Confidence            9999988887643     2222345777888774  3369999999999987     8999987754544  3444   8


Q ss_pred             HHHHHHHHHcCCEEEEcccc-ccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCHH
Q 009517          293 RAIVDFCKKEGLVLLADEVY-QENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSAE  371 (533)
Q Consensus       293 ~~i~~l~~~~~~~lI~De~y-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~~  371 (533)
                      +++.++|++.|.++++|.++ .+|+-++.  +.+...        +.|   |+..|.+|+|   +|-|.|.+......++
T Consensus       183 ~~~reiad~vga~l~~D~aH~~GLIa~g~--~~sP~~--------~aD---vvt~tThKtl---rGPrggiI~~~~~~~~  246 (416)
T d1dfoa_         183 AKMREIADSIGAYLFVDMAHVAGLVAAGV--YPNPVP--------HAH---VVTTTTHKTL---AGPRGGLILAKGGSEE  246 (416)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTHHHHHHTS--SCCCTT--------TSS---EEEEESSSTT---CCCSCEEEEESSCCHH
T ss_pred             HHHHHHHHhcCceEEcchhhhhcceeccc--cCCccc--------ccc---eeeeehhhcc---cCCCceEEEeccchHh
Confidence            99999999999999999998 45554432  222111        234   7788999998   3889999987322467


Q ss_pred             HHHHHHHhhh-ccccCChHHHHH-HHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEecC-Ccee
Q 009517          372 VREQIYKVAS-VNLCSNISGQIL-ASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKA-EGAM  448 (533)
Q Consensus       372 ~~~~l~~~~~-~~~~~~~~~q~a-~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~-~gg~  448 (533)
                      +.+.+.+..- ...+.+.....+ .+.++...         ...+.+.-.++..++.+.|.+.|.+. |++++.. ....
T Consensus       247 ~~~~i~~avfPg~qggp~~~~iaa~Aval~Ea---------~~~~fk~Y~~qvv~NA~~La~~L~~~-G~~iv~ggTdnH  316 (416)
T d1dfoa_         247 LYKKLNSAVFPGGQGGPLMHVIAGKAVALKEA---------MEPEFKTYQQQVAKNAKAMVEVFLER-GYKVVSGGTDNH  316 (416)
T ss_dssp             HHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHT---------TSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSS
T ss_pred             HHHHHHhhhCcccccCccHHHHHHHHHHHHHH---------cCHHHHHHHHHHHHHHHHHHHHHHhC-CcccccCCCCCc
Confidence            7777765443 222222222222 22223210         11223445566778888999999998 9998753 3344


Q ss_pred             EEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEE----cCCCCCCCCCCceEEEEec------CCcCcHHHHHH
Q 009517          449 YLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLV----PGSGFGQVPGTWHFRCTIL------PQEDKIPAIVT  518 (533)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~----pg~~f~~~~g~~~iRis~~------~~~e~i~~~~~  518 (533)
                      .+++++. +         .+.  +-..+..+|++.||.+.    |+..-. +-....|||+..      ..+++++++.+
T Consensus       317 lvlvdl~-~---------~~~--~G~~a~~~Le~~gI~~Nkn~iP~d~~~-~~~~SGiRiGT~a~TtrG~~e~d~~~iA~  383 (416)
T d1dfoa_         317 LFLVDLV-D---------KNL--TGKEADAALGRANITVNKNSVPNDPKS-PFVTSGIRVGTPAITRRGFKEAEAKELAG  383 (416)
T ss_dssp             EEEEECG-G---------GTC--CHHHHHHHHHHTTEECEECCCTTCSSC-TTTCSEEEEECHHHHHTTCCHHHHHHHHH
T ss_pred             eeEEEec-c---------cCC--CHHHHHHHHHHcCeEEeCCcCCCCCCC-CCCCCceEeCCHHHHhCCCCHHHHHHHHH
Confidence            5566553 1         112  22335678999999875    332100 111236999982      56788999999


Q ss_pred             HHHHHHHH
Q 009517          519 RLTDFHKN  526 (533)
Q Consensus       519 ~l~~~l~~  526 (533)
                      -|.++++.
T Consensus       384 ~I~~~l~~  391 (416)
T d1dfoa_         384 WMCDVLDS  391 (416)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHc
Confidence            88888753

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=99.63  E-value=5.7e-14  Score=140.12  Aligned_cols=315  Identities=13%  Similarity=0.100  Sum_probs=203.0

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCC--CeE
Q 009517          141 SADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEN--DGI  218 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g--d~V  218 (533)
                      ..+-++++.+.+..    .....++  -..+|.+.++++++        .+.++.+++|+.|+.++++++...+|  ++|
T Consensus        11 ~~~~~~~v~~~l~~----~~~~~G~--~v~~fE~~~~~~~g--------~k~ai~~~Sgt~Al~~al~al~~~~~~~~eV   76 (371)
T d2fnua1          11 DKEDKKAVLEVLNS----KQLTQGK--RSLLFEEALCEFLG--------VKHALVFNSATSALLTLYRNFSEFSADRNEI   76 (371)
T ss_dssp             CHHHHHHHHHHHTS----SCCSSSH--HHHHHHHHHHHHHT--------CSEEEEESCHHHHHHHHHHHSSCCCTTSCEE
T ss_pred             CHHHHHHHHHHHcC----CCccCCH--HHHHHHHHHHHHHC--------cCeEEEEecHHHHHHHHHHHhcccCCCCCee
Confidence            57778888888865    2322232  26788889999875        45789999999999999999853344  489


Q ss_pred             EEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHH
Q 009517          219 LCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDF  298 (533)
Q Consensus       219 lv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l  298 (533)
                      ++|.-+|.....++...|++++.++++.+ + .++.+++++.+++      ++++|++.|.   -|...+   +++|.++
T Consensus        77 i~p~~t~~a~~~ai~~~G~~pv~vDi~~~-~-~~~~~~~~~~~~~------~t~avi~vh~---~G~~~~---~~~i~~~  142 (371)
T d2fnua1          77 ITTPISFVATANMLLESGYTPVFAGIKND-G-NIDELALEKLINE------RTKAIVSVDY---AGKSVE---VESVQKL  142 (371)
T ss_dssp             EECSSSCTHHHHHHHHTTCEEEECCBCTT-S-SBCGGGSGGGCCT------TEEEEEEECG---GGCCCC---HHHHHHH
T ss_pred             ecccccccccceeeeccCccccccccccc-c-cccchhhhhhccc------hhhccccccc---cccccc---ccccccc
Confidence            99999999999999999999999998865 3 4566778777766      8999997764   466666   7889999


Q ss_pred             HHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecC--CccCCCCCCCeeEEEEEecCCHHHHHHH
Q 009517          299 CKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSV--SKGYYGECGKRGGYMEVTGFSAEVREQI  376 (533)
Q Consensus       299 ~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~--SK~~~gl~G~riG~v~~~~~~~~~~~~l  376 (533)
                      |+++++++|+|.+++....-.+....+           ..+   +.+.||  +|.+.  +|- .|.++.  .++++.+.+
T Consensus       143 ~~~~~i~lIEDaaqa~Ga~~~~~~~G~-----------~g~---~~~~Sf~~~K~l~--~g~-GG~i~t--~~~~~~~~~  203 (371)
T d2fnua1         143 CKKHSLSFLSDSSHALGSEYQNKKVGG-----------FAL---ASVFSFHAIKPIT--TAE-GGAVVT--NDSELHEKM  203 (371)
T ss_dssp             HHHHTCEEEEECTTCTTCEETTEETTS-----------SSS---EEEEECCTTSSSC--CSS-CEEEEE--SCHHHHHHH
T ss_pred             ccccchhhccchhhccCceeccccCCc-----------ccc---ccccccccccccc--ccc-ceEEEe--echhhhhhc
Confidence            999999999999997643322211100           123   445566  79873  343 688777  478888888


Q ss_pred             HHhhhcc-----------------ccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 009517          377 YKVASVN-----------------LCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGI  439 (533)
Q Consensus       377 ~~~~~~~-----------------~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~  439 (533)
                      ..+....                 +..+.+.++++..-|+              .++...++-++..+++.+.|++.+++
T Consensus       204 ~~~~~~g~~~~~~~~~~~~~~G~n~r~sel~Aaigl~qL~--------------~l~~~~~~R~~~~~~y~~~l~~~~~~  269 (371)
T d2fnua1         204 KLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLK--------------KAPFLMQKREEAALTYDRIFKDNPYF  269 (371)
T ss_dssp             HHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHT--------------THHHHHHHHHHHHHHHHHHHTTCSSE
T ss_pred             ccccccccccccccccccccccccccccchhhhhhhhhhh--------------hccchhhhhhhhhhhhcccccccccc
Confidence            7764211                 1234444444444443              12333333344556677788887776


Q ss_pred             eEecCC----ceeEEe-cccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCC-------CC--CCC-------
Q 009517          440 TCNKAE----GAMYLF-PRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGF-------GQ--VPG-------  498 (533)
Q Consensus       440 ~~~~~~----gg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f-------~~--~~g-------  498 (533)
                      ....+.    ...+.+ +-+..+..          ..... +.+.|+++||.+.+....       ..  ..+       
T Consensus       270 ~~~~~~~~~~~~~~~~~i~~~~~~~----------~~r~~-~~~~L~~~gI~~~~~y~pl~~~~~~~~~~~~~~~pnae~  338 (371)
T d2fnua1         270 TPLHPLLKDKSSNHLYPILMHQKFF----------TCKKL-ILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAED  338 (371)
T ss_dssp             EESGGGCSSCCCCSCEEEEECGGGG----------GGHHH-HHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHH
T ss_pred             cccccccccccccccccccccccch----------hHHHH-HHHHHHHCCCCcceeCcccccCHHHHhccccCCCHHHHH
Confidence            654321    111111 11221100          01123 345667899998765321       00  011       


Q ss_pred             --CceEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 009517          499 --TWHFRCTIL--PQEDKIPAIVTRLTDFHKNF  527 (533)
Q Consensus       499 --~~~iRis~~--~~~e~i~~~~~~l~~~l~~~  527 (533)
                        ...|.|-+.  ++++++++.++.|.++++++
T Consensus       339 ~~~~~l~LP~~~~lt~~di~~I~~~i~~~~~~~  371 (371)
T d2fnua1         339 FYHAEISLPCHANLNLESVQNIAHSVLKTFESF  371 (371)
T ss_dssp             HHHHEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCeEECcCCCCCCHHHHHHHHHHHHHHHHcC
Confidence              124555443  78899999999998888764

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=99.57  E-value=1.1e-14  Score=149.77  Aligned_cols=184  Identities=17%  Similarity=0.132  Sum_probs=109.3

Q ss_pred             CCCcccHHHHHHHHHHHHhhcCCCCCCCCEEE-cCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHh-CCeEEE
Q 009517          164 SHSQGIKGLRDTIAAGIEARDGFPADPNDIFL-TDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALH-GGTLVP  241 (533)
Q Consensus       164 ~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~-t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~-g~~~~~  241 (533)
                      .|..-+.++++.+|++++        .++.++ ++|++.++..++.+++ ++||+|+++..+|....+.+... +..++.
T Consensus        63 ~~~~~i~eae~~~A~~~g--------a~~a~f~~~Gtt~~n~a~i~a~~-~~gd~Vi~~~~~H~Sv~~~~~~l~~~~~~~  133 (462)
T d1c4ka2          63 IHEGPAVAAEKHAARVYN--------ADKTYFVLGGSSNANNTVTSALV-SNGDLVLFDRNNHKSVYNSALAMAGGRPVY  133 (462)
T ss_dssp             TTBTHHHHHHHHHHHHTT--------CSEEEEESSHHHHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHTTTTCCEEEE
T ss_pred             CCCHHHHHHHHHHHHHhC--------CCeEEEECCchHHHHHHHHHHhc-CCCCeEEecccchHHHHHHHHHHhcCCcee
Confidence            333336788888888864        455555 5666777777788888 89999999999998877655443 444443


Q ss_pred             E--ecCCCCC-C-----CCCHHHHHHHHHH---HHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEcc
Q 009517          242 Y--YLDEATG-W-----GLETSEVKKQLEA---AKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADE  310 (533)
Q Consensus       242 v--~~~~~~~-~-----~ld~~~l~~~i~~---~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De  310 (533)
                      .  +.++... .     .++.+.+++.+..   ......++..+++.+.+|-+|.+.+   +++|+++|+++|+++++|+
T Consensus       134 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~d---l~~I~~ia~~~g~~l~vD~  210 (462)
T d1c4ka2         134 LQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYN---AHEVVKRIGHLCDYIEFDS  210 (462)
T ss_dssp             ECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEEC---HHHHHHHHGGGBSEEEEEC
T ss_pred             eecccccccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhh---HHHHHHHHHHcCCEEEEec
Confidence            3  3332210 0     1233333332211   1112235566666666677999988   9999999999999999999


Q ss_pred             cccccc-ccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEE
Q 009517          311 VYQENV-YVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV  365 (533)
Q Consensus       311 ~y~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~  365 (533)
                      ++.... +.+..+ .+......+..  ......+++.|++|++ |  +...|.++.
T Consensus       211 A~~~~~~~~~~~~-~~~~~~g~~~~--~~~~~D~~~~S~HK~l-g--~~~~g~ll~  260 (462)
T d1c4ka2         211 AWVGYEQFIPMMR-NSSPLLIDDLG--PEDPGIIVVQSVHKQQ-A--GFSQTSQIH  260 (462)
T ss_dssp             TTCCGGGSSGGGG-GGCTTSCCCCC--TTSCEEEEEECHHHHS-S--CCTTCEEEE
T ss_pred             hhhccccccCcCC-cchhhcccccc--ccCCccEEEEecCccc-c--cccceEEEE
Confidence            996532 211101 01000000000  0112357899999998 4  333455544

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.54  E-value=7.6e-12  Score=124.23  Aligned_cols=334  Identities=12%  Similarity=0.023  Sum_probs=209.6

Q ss_pred             CHHHHHHHHHHHhcCCCCC---ccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEE-cCChHHHHHHHHHHhccCCCC
Q 009517          141 SADSIERAWQILDQIPGRA---TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFL-TDGASPAVHMMMQLLIRSEND  216 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~---~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~-t~G~~~al~~~~~~l~~~~gd  216 (533)
                      ++.|.+++...+.+....+   ...|.-..-+.++.....+...+.||.+.+...+-+ ..+++.|...++.+++ +|||
T Consensus        44 S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~SGs~An~av~~all-~pgD  122 (470)
T d1rv3a_          44 SRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALV-EPHG  122 (470)
T ss_dssp             CHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHT-CTTC
T ss_pred             CHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCChhhccccccccCCccHHHHHHHHhc-CCCC
Confidence            5777777766665432110   122444443556666666777777775433333322 3467788888888998 8999


Q ss_pred             eEEEcCCcCcchHHH----------HHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccC
Q 009517          217 GILCPIPQYPLYSAS----------IALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQV  286 (533)
Q Consensus       217 ~Vlv~~p~~~~~~~~----------~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~  286 (533)
                      +|+..+....+|..-          +.....+.+.|+++++ +..+|.+++++..+..     ++++|++-.-.+|-  .
T Consensus       123 ~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~~~-~~~IDyd~l~~~a~~~-----kPklIi~G~S~y~r--~  194 (470)
T d1rv3a_         123 RIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPD-TGYIDYDRLEENARLF-----HPKLIIAGTSCYSR--N  194 (470)
T ss_dssp             EEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTT-TCSBCHHHHHHHHHHH-----CCSEEEECCSSCCS--C
T ss_pred             eEeeeccccCCcccccccccCCCcccccceeEeeEEEEecc-cCcccHHHHHHHHHhh-----CcceEeechhhccc--c
Confidence            999988766655321          1222357888888875 5579999999999987     89988866555553  3


Q ss_pred             CCHHHHHHHHHHHHHcCCEEEEcccc-ccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEE
Q 009517          287 LAEENQRAIVDFCKKEGLVLLADEVY-QENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV  365 (533)
Q Consensus       287 ~s~~~l~~i~~l~~~~~~~lI~De~y-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~  365 (533)
                      ++   ++++.++|++.|.+++.|-++ .+|+-+|.  +.+...        +.|   |+..|..|+|   +|-|.|.|..
T Consensus       195 ~d---~~~~reIad~vga~l~~D~aH~aGLIA~g~--~~sPl~--------~aD---vvt~tTHKtl---rGPrgGiI~~  255 (470)
T d1rv3a_         195 LD---YGRLRKIADENGAYLMADMAHISGLVVAGV--VPSPFE--------HCH---VVTTTTHKTL---RGCRAGMIFY  255 (470)
T ss_dssp             CC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTS--SCCGGG--------TCS---EEEEESSGGG---CCCSCEEEEE
T ss_pred             CC---HHHHHHHHhccCCeEEecchhhhhhccccc--cCChhh--------eee---eeeeehhhhc---cCCcceEEEE
Confidence            34   899999999999999999998 55555443  233212        235   7789999998   3888899887


Q ss_pred             ecC----C--------HHHHHHHHHhhh-ccccCChHHH-HHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009517          366 TGF----S--------AEVREQIYKVAS-VNLCSNISGQ-ILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLED  431 (533)
Q Consensus       366 ~~~----~--------~~~~~~l~~~~~-~~~~~~~~~q-~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  431 (533)
                      ...    +        .++.+.+.+..- ...+.+...+ ++.+.++.         +....+.+.-.+++.++.+.|.+
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~---------ea~~~~fk~Ya~qvv~NAk~La~  326 (470)
T d1rv3a_         256 RRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALK---------QAMTPEFKEYQRQVVANCRALSA  326 (470)
T ss_dssp             ECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHH---------HHTSHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccchhHHHHHHHHhhhcCccccccchhhHHHHHHHHHH---------HhcChHHHHHHHHHHHHHHHHHH
Confidence            211    0        136666665432 2222222222 22222221         11112345556667788888999


Q ss_pred             HHhcCCCceEec-CCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEE----cCCCCCCCCCCceEEEEe
Q 009517          432 AFNSLEGITCNK-AEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLV----PGSGFGQVPGTWHFRCTI  506 (533)
Q Consensus       432 ~L~~~~g~~~~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~----pg~~f~~~~g~~~iRis~  506 (533)
                      .|.+. |+.++. ......+++++..          .+++  -..+.+.|++.||.+.    |+..-  +-....|||..
T Consensus       327 ~L~~~-G~~v~~ggTdnHlvlvdl~~----------~g~~--g~~ae~~Le~~gI~~Nkn~iP~D~~--~~~~sGiRiGT  391 (470)
T d1rv3a_         327 ALVEL-GYKIVTGGSDNHLILVDLRS----------KGTD--GGRAEKVLEACSIACNKNTCPGDKS--ALRPSGLRLGT  391 (470)
T ss_dssp             HHHHT-TCEEGGGSCSSSEEEEEGGG----------GTCC--HHHHHHHHHHTTEECEEECCSSCSC--TTSCCEEEEEC
T ss_pred             HHHhC-CceeccCCCCCceEEEeecc----------cCCc--HHHHHHHHHHcCcEECCCcCCCCCC--CCCCCeeEecC
Confidence            99988 988864 3334455655531          1222  2235678999999875    44321  11123699998


Q ss_pred             ------cCCcCcHHHHHHHHHHHHHH
Q 009517          507 ------LPQEDKIPAIVTRLTDFHKN  526 (533)
Q Consensus       507 ------~~~~e~i~~~~~~l~~~l~~  526 (533)
                            +..+++++++.+-|.++++.
T Consensus       392 ~alTtrG~~e~dm~~iA~~I~~~l~~  417 (470)
T d1rv3a_         392 PALTSRGLLEKDFQKVAHFIHRGIEL  417 (470)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence                  26778899999999888853

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.51  E-value=2.9e-12  Score=127.59  Aligned_cols=193  Identities=15%  Similarity=0.113  Sum_probs=134.2

Q ss_pred             HHHHHHHHhcCCCCCccccCCCcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCc
Q 009517          145 IERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQ  224 (533)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~  224 (533)
                      ++.+.+.+++.   ...+.++.  ...|.+.++++++        .+.++.+++||.|+.++++++-..+||+|++|.-+
T Consensus         4 ~~~~~~~l~~~---~~~~~G~~--~~~fE~~~~~~~~--------~~~~~~~~SgT~Al~lal~~l~~~~gdeVi~p~~t   70 (374)
T d1o69a_           4 LKYIEEVFKSN---YIAPLGEF--VNRFEQSVKDYSK--------SENALALNSATAALHLALRVAGVKQDDIVLASSFT   70 (374)
T ss_dssp             HHHHHHHHHHT---TTSCTTHH--HHHHHHHHHHHHC--------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSS
T ss_pred             HHHHHHHHhcC---CcCCCCHH--HHHHHHHHHHHHC--------cCeEEEeCCHHHHHHHHHHHcCCCCcCEEEeCCcc
Confidence            56667777651   11123333  6789999999875        35789999999999999999832789999999999


Q ss_pred             CcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCC
Q 009517          225 YPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGL  304 (533)
Q Consensus       225 ~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~  304 (533)
                      |......+..+|++++.+++++. .+..+.+..+.....    .+++++|++.+..   |....   +++|.++|+++|+
T Consensus        71 ~~a~~~~~~~~g~~pv~~Di~~~-~~~~~~~~~~~~~~~----~~~~~aii~~~~~---G~~~d---~~~i~~~~~~~~i  139 (374)
T d1o69a_          71 FIASVAPICYLKAKPVFIDCDET-YNIDVDLLKLAIKEC----EKKPKALILTHLY---GNAAK---MDEIVEICKENDI  139 (374)
T ss_dssp             CGGGTHHHHHTTCEEEEECBCTT-SSBCHHHHHHHHHHC----SSCCCEEEEECGG---GCCCC---HHHHHHHHHHTTC
T ss_pred             hHhhHHHHhhccceeEecccccc-cccccccccccchhc----ccccccccccccc---cchhh---hHHHHHHhhccCc
Confidence            99999999999999999999853 333333333322111    2378899977663   45555   8999999999999


Q ss_pred             EEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCC--ccCCCCCCCeeEEEEEecCCHHHHHHHHHhh
Q 009517          305 VLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVS--KGYYGECGKRGGYMEVTGFSAEVREQIYKVA  380 (533)
Q Consensus       305 ~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~S--K~~~gl~G~riG~v~~~~~~~~~~~~l~~~~  380 (533)
                      +||+|.+++....-.+.+..+           ..|   +.+.||.  |.+ + +| -.|.++.  .++++.+.+..+.
T Consensus       140 ~vIED~a~a~g~~~~~~~~G~-----------~gd---~~~fSf~~~K~l-~-tg-eGG~i~t--nn~~~~~~~~~~~  198 (374)
T d1o69a_         140 VLIEDAAEALGSFYKNKALGT-----------FGE---FGVYSYNGNKII-T-TS-GGGMLIG--KNKEKIEKARFYS  198 (374)
T ss_dssp             EEEEECTTCTTCEETTEETTS-----------SSS---EEEEECCTTSSS-C-CS-SCEEEEE--SCHHHHHHHHHHT
T ss_pred             chhhhhhhhhcceECCeecCC-----------CCc---eEEEeccCcccc-c-cc-cceeehh--hhHHHHHhhcccc
Confidence            999999997533222211111           123   5566775  887 3 34 3577776  4788888887653

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=99.51  E-value=7.1e-12  Score=124.01  Aligned_cols=329  Identities=14%  Similarity=0.088  Sum_probs=191.2

Q ss_pred             CHHHHHHHHHHHhcCCCCC---ccccCCCcccHHHHHHHHHHHHhhcCCCCCCC--CEEEcCChHHHHHHHHHHhccCCC
Q 009517          141 SADSIERAWQILDQIPGRA---TGAYSHSQGIKGLRDTIAAGIEARDGFPADPN--DIFLTDGASPAVHMMMQLLIRSEN  215 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~---~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~--~i~~t~G~~~al~~~~~~l~~~~g  215 (533)
                      ++.|.+++...+.+.....   ...|.-..-+.++.....+...+.|+.+....  +|-. .+++.|...++.+++ +||
T Consensus        40 S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~a~w~vNVqp-~SGs~An~av~~all-~pg  117 (463)
T d2a7va1          40 SRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQP-YSGSPANLAVYTALL-QPH  117 (463)
T ss_dssp             CHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCC-SSHHHHHHHHHHHHC-CSC
T ss_pred             CHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCchhccCCccc-cccHHHHHHHHHHHc-CCC
Confidence            5777777666665432210   11233333355666555666666677443221  3444 446688888888888 899


Q ss_pred             CeEEEcCCcCcchHHH--------HHHhCC--eEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCcc
Q 009517          216 DGILCPIPQYPLYSAS--------IALHGG--TLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQ  285 (533)
Q Consensus       216 d~Vlv~~p~~~~~~~~--------~~~~g~--~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~  285 (533)
                      |+|+..++...+|..-        ....|.  +..+|.++++ +..+|.+++++..+..     ++++|++-.-.+|-- 
T Consensus       118 D~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~-~~~IDyd~~~~~a~~~-----kPklIi~G~S~y~r~-  190 (463)
T d2a7va1         118 DRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPK-TGLIDYNQLALTARLF-----RPRLIIAGTSAYARL-  190 (463)
T ss_dssp             EECCC-------------------------------CCBCTT-TCSBCHHHHHHHHHHH-----CCSEEEECCSSCCSC-
T ss_pred             ceEEeeccCcCcccccccccccccccceeeEeeeeeeeccCC-CCcCcHHHHHHHHhhc-----CCceEEecccccccc-
Confidence            9999988877766421        122232  4455555544 5579999999999997     899988765555533 


Q ss_pred             CCCHHHHHHHHHHHHHcCCEEEEcccc-ccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEE
Q 009517          286 VLAEENQRAIVDFCKKEGLVLLADEVY-QENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYME  364 (533)
Q Consensus       286 ~~s~~~l~~i~~l~~~~~~~lI~De~y-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~  364 (533)
                       ++   ++++.++|++.|.+++.|-++ .+|+-+|.  +.+...        +.|   |+..|..|+|   +|-|.|.|.
T Consensus       191 -~d---~~~~reIad~vga~l~~D~aH~aGLIA~g~--~~sP~~--------~aD---vvt~tTHKTl---rGPrgGiIl  250 (463)
T d2a7va1         191 -ID---YARMREVCDEVKAHLLADMAHISGLVAAKV--IPSPFK--------HAD---IVTTTTHKTL---RGARSGLIF  250 (463)
T ss_dssp             -CC---HHHHHHHHHHTTCEEEEECGGGHHHHHTTS--SCCGGG--------TCS---EEEEESSGGG---CSCSCEEEE
T ss_pred             -cC---HHHHHHHhhcccceEEechhhhhHHhhhhh--hcChhh--------hhh---hhhchhhhhh---cCCCceEEE
Confidence             33   899999999999999999998 55554442  333222        245   7788999998   488989888


Q ss_pred             EecCCH---------------HHHHHHHHhhhccc-cCChHHHHHH-HHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 009517          365 VTGFSA---------------EVREQIYKVASVNL-CSNISGQILA-SLVMSPPKVGDESYESYCAERDGILSSLARRAK  427 (533)
Q Consensus       365 ~~~~~~---------------~~~~~l~~~~~~~~-~~~~~~q~a~-~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (533)
                      +   ++               ++.+.+...--... +.+.....++ +.++.         +....+.+.-.++..++.+
T Consensus       251 ~---~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~---------ea~~~~fk~Ya~qVv~NAk  318 (463)
T d2a7va1         251 Y---RKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALK---------QACTPMFREYSLQVLKNAR  318 (463)
T ss_dssp             E---ECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHH---------HHHSHHHHHHHHHHHHHHH
T ss_pred             E---cccccccccccCccchhHHHHHhhhhcCcccchhhhhhhHHHHHHHHH---------HhcCchHHHHHHHHHHHHH
Confidence            7   33               56666665432222 2222222222 22221         1111234455566777888


Q ss_pred             HHHHHHhcCCCceEecC-CceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEE----cCCCCCCCCCCceE
Q 009517          428 TLEDAFNSLEGITCNKA-EGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLV----PGSGFGQVPGTWHF  502 (533)
Q Consensus       428 ~l~~~L~~~~g~~~~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~----pg~~f~~~~g~~~i  502 (533)
                      .|.+.|.+. |++++.. .....+++++...          +.  +-..+...|++.||.+.    |+..-  +.....|
T Consensus       319 ~La~~L~~~-G~~vv~ggTdnHlvlvdl~~~----------~~--~G~~ae~~Le~~gI~~Nkn~iP~D~~--~~~~sGi  383 (463)
T d2a7va1         319 AMADALLER-GYSLVSGGTDNHLVLVDLRPK----------GL--DGARAERVLELVSITANKNTCPGDRS--AITPGGL  383 (463)
T ss_dssp             HHHHHHHHT-TCEEGGGSCSSSEEEEECTTT----------TC--CHHHHHHHHHHTTEECEEECCTTCCC--SSSCSEE
T ss_pred             HHHHHHHhC-CCeeecCCCCCceeeeecccc----------CC--CHHHHHHHHHhccCccCCccCCCCCC--CCCCCce
Confidence            999999988 9988753 3445566665411          11  22235678899999875    33321  1112369


Q ss_pred             EEEec------CCcCcHHHHHHHHHHHHH
Q 009517          503 RCTIL------PQEDKIPAIVTRLTDFHK  525 (533)
Q Consensus       503 Ris~~------~~~e~i~~~~~~l~~~l~  525 (533)
                      ||...      ..+++++++.+-|.++++
T Consensus       384 RiGT~a~TtrG~~e~dm~~iA~~I~~~l~  412 (463)
T d2a7va1         384 RLGAPALTSRQFREDDFRRVVDFIDEGVN  412 (463)
T ss_dssp             EEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             EeCCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            99982      566889999999988875

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=99.41  E-value=1.4e-12  Score=129.33  Aligned_cols=325  Identities=14%  Similarity=0.128  Sum_probs=175.7

Q ss_pred             cCCCCHHHHHHHHHHHhcCCCC--CccccCC-CcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHH-HHHHHHhcc
Q 009517          137 QGLFSADSIERAWQILDQIPGR--ATGAYSH-SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAV-HMMMQLLIR  212 (533)
Q Consensus       137 ~~~~p~~v~~~~~~~~~~~~~~--~~~~Y~~-~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al-~~~~~~l~~  212 (533)
                      |..+|++|++++.+.+.+..+.  +...... ..-..++.+.+.+.+...++.+ +...|++++|++.+. ..++..+. 
T Consensus        11 P~~vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~-~~~~i~~~~gs~t~~~ea~~~~l~-   88 (361)
T d2c0ra1          11 PAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNP-TGYKVLFIQGGASTQFAMIPMNFL-   88 (361)
T ss_dssp             SCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCC-SSEEEEEESSHHHHHHHHHHHHHC-
T ss_pred             CcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCC-CCCEEEEECCCchHHHHHHHhccc-
Confidence            3444899999998877653211  1111111 1124556566666666666643 233688877776555 45555555 


Q ss_pred             CCCCeEEEcCCcCcc--hHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHH
Q 009517          213 SENDGILCPIPQYPL--YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE  290 (533)
Q Consensus       213 ~~gd~Vlv~~p~~~~--~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~  290 (533)
                      .+|+++++..-....  +..+++..|..+..+..+...  .++++.+++.+..      .. .   .+.+|.||...+  
T Consensus        89 ~~~~~~l~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~------~~-~---~~v~~~tg~~~~--  154 (361)
T d2c0ra1          89 KEGQTANYVMTGSWASKALKEAKLIGDTHVAASSEASN--YMTLPKLQEIQLQ------DN-A---AYLHLTSNETIE--  154 (361)
T ss_dssp             CTTCEEEEEECSHHHHHHHHHHHHHSCEEEEEECGGGT--TCSCCCGGGCCCC------TT-E---EEEEEESEETTT--
T ss_pred             cCCCceEEEeechhhhhhhhhhhhcCceeeeecccccc--ccchhhhhhhccc------Cc-c---eEEEEeccccee--
Confidence            678887765533322  455677789988888876543  4566666665543      22 2   233567888887  


Q ss_pred             HHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecCCH
Q 009517          291 NQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFSA  370 (533)
Q Consensus       291 ~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~~~  370 (533)
                       +.+|.++|+++|+++++|.+.+.    +..+ ..+    .+     -|   +.+.|.+|.+ +++|.-.+++.    ..
T Consensus       155 -~~~i~~~~~~~~al~~vDavss~----g~~~-id~----~~-----~d---i~~~s~~k~~-~~~~~~~~~~~----~~  211 (361)
T d2c0ra1         155 -GAQFKAFPDTGSVPLIGDMSSDI----LSRP-FDL----NQ-----FG---LVYAGAQKNL-GPSGVTVVIVR----ED  211 (361)
T ss_dssp             -TEECSSCCCCTTSCEEEECTTTT----TSSC-CCG----GG-----CS---EEEEETTTTT-CCSSCEEEEEE----GG
T ss_pred             -cceEEEeeccCCceEEEEeeccc----cccc-ccc----cc-----ce---eEEEeccccc-ccccCcEEEEE----hH
Confidence             66788899999999999999975    3222 221    11     23   4466789998 66664443332    22


Q ss_pred             HHH------------HHHHHhhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 009517          371 EVR------------EQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEG  438 (533)
Q Consensus       371 ~~~------------~~l~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  438 (533)
                      .+.            ............+++....++...+.        ..........+..+.+.++..+.........
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (361)
T d2c0ra1         212 LVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLK--------WIEERGGLEGVQQANRKKASLIYDAIDQSGG  283 (361)
T ss_dssp             GSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHH--------HHHHTTHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred             HhhhCccccccccccccccccccccccccceeeehhhhHHH--------hhhhccchHHHHHHHHHHHHHhhhhhhhccc
Confidence            111            11111111112222222222221110        0001111233444444455555555544312


Q ss_pred             -ceEecCC---ceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCc
Q 009517          439 -ITCNKAE---GAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDK  512 (533)
Q Consensus       439 -~~~~~~~---gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~  512 (533)
                       .......   ....+.  +.+|.+.          +... +...|+++||.+..|...   -+  .||||+.  ++.|+
T Consensus       284 ~~~~~~~~~~rS~~~~~--~~~~~~~----------~~~~-~~~~L~~~GI~~~~G~~~---~g--~~RIs~~~~~~~ed  345 (361)
T d2c0ra1         284 FYRGCVDVDSRSDMNIT--FRLASEE----------LEKE-FVKASEQEGFVGLKGHRS---VG--GLRASIYNAVPYES  345 (361)
T ss_dssp             SSEESSCGGGBCSSEEE--EECSCHH----------HHHH-HHHHHHHTTEESCBCCTT---TC--SEEEECCTTSCHHH
T ss_pred             ccccCCChhhccceEEE--EECCCcc----------cHHH-HHHHHHHCCCEEecCCCc---CC--eEEEEecCCCCHHH
Confidence             2221111   111122  2233321          1223 457778999999987532   22  3999995  78999


Q ss_pred             HHHHHHHHHHHHHH
Q 009517          513 IPAIVTRLTDFHKN  526 (533)
Q Consensus       513 i~~~~~~l~~~l~~  526 (533)
                      |+++++.|+++.++
T Consensus       346 v~~Lv~~l~~~~~~  359 (361)
T d2c0ra1         346 CEALVQFMEHFKRS  359 (361)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999998887654

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=99.24  E-value=1.6e-11  Score=120.93  Aligned_cols=320  Identities=14%  Similarity=0.059  Sum_probs=163.5

Q ss_pred             CCCHHHHHHHHHHHhcCCCC--CccccCC-Ccc----cHHHHHHHHHHHHhhcCCCCC-CCCEEEcCChHHHHHHHHHHh
Q 009517          139 LFSADSIERAWQILDQIPGR--ATGAYSH-SQG----IKGLRDTIAAGIEARDGFPAD-PNDIFLTDGASPAVHMMMQLL  210 (533)
Q Consensus       139 ~~p~~v~~~~~~~~~~~~~~--~~~~Y~~-~~G----~~~lr~aia~~~~~~~g~~~~-~~~i~~t~G~~~al~~~~~~l  210 (533)
                      .+|++|++++.+.+.+..+.  +...... ..-    +.+.|+.+++++    +  .+ ...|++++|++++...+....
T Consensus        11 ~~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~----~--~~~~~~v~~~~gs~t~~~~a~~~~   84 (360)
T d1bjna_          11 MLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLL----N--VPSNYKVLFCHGGGRGQFAAVPLN   84 (360)
T ss_dssp             CCCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHH----T--CCTTEEEEEESSHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHh----C--CCCCCEEEEECCchHHHHhhhhhc
Confidence            34899999998877642110  0111111 111    344555555555    4  33 346888888877766665554


Q ss_pred             ccCCCCeEEEcCCcCcch--HHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCC
Q 009517          211 IRSENDGILCPIPQYPLY--SASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLA  288 (533)
Q Consensus       211 ~~~~gd~Vlv~~p~~~~~--~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s  288 (533)
                      ...+++.+++..-.+...  ....+..|...+.+......  .++.+.+++.+..      +++++++.+.+|-||...+
T Consensus        85 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~------~~~~v~v~~~~~~t~~~~~  156 (360)
T d1bjna_          85 ILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFDAKVTVD--GLRAVKPMREWQL------SDNAAYMHYCPNETIDGIA  156 (360)
T ss_dssp             HCTTCCEEEEEESSHHHHHHHHHHTTTSEEEEEECEEEET--TEEEECCGGGCCC------CSSCSCEEECSEETTTTEE
T ss_pred             ccccccccceecccchhhhhHHHHhhcCccceeeccccCC--Ccchhhhhhhhcc------CCceeEEEecccccccCcc
Confidence            425667777766555442  33334445555555443322  3344444444443      7888888888999998766


Q ss_pred             HHHHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCCCCeeEEEEEecC
Q 009517          289 EENQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGF  368 (533)
Q Consensus       289 ~~~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~G~riG~v~~~~~  368 (533)
                      .   +.+  .++.+++++++|.+.+....    + ...    .     .-|   +.+.|.+|.+ ++++- .+.++.   
T Consensus       157 ~---~~i--~~~~~~~~v~vDa~~~~~~~----~-vd~----~-----~~d---v~~~ss~k~~-~~~~~-~~~~~~---  209 (360)
T d1bjna_         157 I---DET--PDFGADVVVAADFSSTILSR----P-IDV----S-----RYG---VIYAGAQKNI-GPAGL-TIVIVR---  209 (360)
T ss_dssp             C---CCC--CCCCTTCCEEEECTTTTTSS----C-CCG----G-----GCS---EEEEETTTTT-SSTTC-EEEEEE---
T ss_pred             c---cce--ecccccceeeeeeeccccce----e-eee----c-----cce---eEEEEccccc-ccCCC-ceeEee---
Confidence            3   333  34567899999988764221    1 111    1     123   6678889998 54443 333333   


Q ss_pred             CHHHH------------HHHHHhhhccccCChHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 009517          369 SAEVR------------EQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSL  436 (533)
Q Consensus       369 ~~~~~------------~~l~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  436 (533)
                      .+...            ............++......+.....        ........+...++..+...++...+...
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (360)
T d1bjna_         210 EDLLGKANIACPSILDYSILNDNGSMFNTPPTFAWYLSGLVFK--------WLKANGGVAEMDKINQQKAELLYGVIDNS  281 (360)
T ss_dssp             GGGCSCCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHH--------HHHHTTHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ehhhhhccccCCcchhhHHHHhhhhhccccccchHHHHHHHHH--------HHhhhhhHHHHHHHHHHHHHHHHHhhhcc
Confidence            22111            11111111112222222222211110        00011112333444444455555555554


Q ss_pred             CCceEecCC----ceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCc
Q 009517          437 EGITCNKAE----GAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQE  510 (533)
Q Consensus       437 ~g~~~~~~~----gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~  510 (533)
                      .+..+....    -+...   +.+|.+.          .... +..+|+++||.+..|..   ..|  .||||+.  +++
T Consensus       282 ~~~~~~~~~~~rs~~v~~---f~~~~~~----------~~~~-~~~~l~~~Gi~~~~G~~---~~g--~~Ris~~~~~t~  342 (360)
T d1bjna_         282 DFYRNDVAKRNRSRMNVP---FQLADSA----------LDKL-FLEESFAAGLHALKGHR---VVG--GMRASIYNAMPL  342 (360)
T ss_dssp             SSEECCBCGGGBCSSEEE---EEESSGG----------GHHH-HHHHHHHTTEECCBCCT---TTC--SEEEECCTTSCH
T ss_pred             ccccccCCcccccceEEE---EEcCCcc----------cHHH-HHHHHHHCCCEeecCCC---ccC--eEEEEecCCCCH
Confidence            222222211    12111   2223221          1233 34667889999988742   122  4999995  788


Q ss_pred             CcHHHHHHHHHHHHHH
Q 009517          511 DKIPAIVTRLTDFHKN  526 (533)
Q Consensus       511 e~i~~~~~~l~~~l~~  526 (533)
                      |+|+++++.|+++.++
T Consensus       343 edV~~li~~l~e~~~~  358 (360)
T d1bjna_         343 EGVKALTDFMVEFERR  358 (360)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999998888876543

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=99.15  E-value=2.9e-10  Score=111.96  Aligned_cols=154  Identities=11%  Similarity=0.019  Sum_probs=92.4

Q ss_pred             CCHHHHHHHHHHHhcCCCCC--ccccCC-C----cccHHHHHHHHHHHHhhcCCCCCCC-CEEEcCChHHHHHHHHHHhc
Q 009517          140 FSADSIERAWQILDQIPGRA--TGAYSH-S----QGIKGLRDTIAAGIEARDGFPADPN-DIFLTDGASPAVHMMMQLLI  211 (533)
Q Consensus       140 ~p~~v~~~~~~~~~~~~~~~--~~~Y~~-~----~G~~~lr~aia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~  211 (533)
                      +|++|++++.+.+.+..+..  ....+. .    .=+.+.|+.++++++      .+.+ .|++++|++++...+.....
T Consensus        14 ~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~------~~~~~~i~~~~gt~~~~~~~~~~~~   87 (360)
T d1w23a_          14 LPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQ------IPNDYQILFLQGGASLQFTMLPMNL   87 (360)
T ss_dssp             CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHT------CCTTEEEEEESSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhC------CCCCCEEEEeCCcHHHHHHHHHhhh
Confidence            38999999998776532210  000111 0    113455666666664      4344 68888888887776666555


Q ss_pred             cCCCCeEEEcCCcCcc--hHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCH
Q 009517          212 RSENDGILCPIPQYPL--YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAE  289 (533)
Q Consensus       212 ~~~gd~Vlv~~p~~~~--~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~  289 (533)
                      ..+++.|++....+.+  +...+...+...+........  ..+++.++..+.          .+-+.+..|-||++.+ 
T Consensus        88 ~~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----------~~~~~~~~~~tg~~~~-  154 (360)
T d1w23a_          88 LTKGTIGNYVLTGSWSEKALKEAKLLGETHIAASTKANS--YQSIPDFSEFQL----------NENDAYLHITSNNTIY-  154 (360)
T ss_dssp             CCTTCEEEEEECSHHHHHHHHHHHTTSEEEEEEECGGGT--SCSCCCGGGCCC----------CTTEEEEEEESEETTT-
T ss_pred             cccCcccceeeccchhhhhHHHHHHhhhcceeecccccc--ccchhhhhhccc----------ccccceeEecCCcccc-
Confidence            3567888777655443  334445556665555544322  222333333221          1222344567898888 


Q ss_pred             HHHHHHHHHHHHcCCEEEEcccccc
Q 009517          290 ENQRAIVDFCKKEGLVLLADEVYQE  314 (533)
Q Consensus       290 ~~l~~i~~l~~~~~~~lI~De~y~~  314 (533)
                        +.+|.++|+++|+++|+|.+.+-
T Consensus       155 --~~~i~~~~~~~g~l~ivDavqs~  177 (360)
T d1w23a_         155 --GTQYQNFPEINHAPLIADMSSDI  177 (360)
T ss_dssp             --TEECSSCCCCCSSCEEEECTTTT
T ss_pred             --ceeeeeccccceeeEEeeccccc
Confidence              77888999999999999999985

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=98.96  E-value=8.1e-08  Score=95.35  Aligned_cols=302  Identities=16%  Similarity=0.137  Sum_probs=173.5

Q ss_pred             ccccCC--CcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHH----HHH
Q 009517          160 TGAYSH--SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA----SIA  233 (533)
Q Consensus       160 ~~~Y~~--~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~----~~~  233 (533)
                      .+.|.|  .+|..++.-.+..++.+.-|.+  .-+.-+-.|++.....++.+......++++++.-.++.+..    .++
T Consensus        95 ytPyqpE~sQG~Lq~l~e~q~~l~eltGmd--~~n~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~~~p~~~~v~~t~a~  172 (437)
T d1wyua1          95 YTPYQPEVSQGVLQATFEYQTMIAELAGLE--IANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLE  172 (437)
T ss_dssp             CSCCSGGGCHHHHHHHHHHHHHHHHHHTSS--EECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHhhCCC--ccccCchHHHHHHHHHHHHHHhhhcccccccccccChHHhhhhhhhcc
Confidence            334554  5777777667777777666633  33444456666666555544432245789998888876544    345


Q ss_pred             HhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEccccc
Q 009517          234 LHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVDFCKKEGLVLLADEVYQ  313 (533)
Q Consensus       234 ~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~~l~~i~~l~~~~~~~lI~De~y~  313 (533)
                      ..|.+++.++.++.   +.+.++    +.+      ++.+|++.+||. .|..-.   +++|.+++++.|.+++.|..-.
T Consensus       173 ~~g~~vv~v~~~~~---~~~~~~----~~~------~~Aavmi~~Pnt-~G~~ed---~~~i~~~~h~~G~l~~~~ad~~  235 (437)
T d1wyua1         173 AVGAKLLTLPLEGG---RTPLPE----VGE------EVGAVVVQNPNF-LGALED---LGPFAEAAHGAGALFVAVADPL  235 (437)
T ss_dssp             HTTCEEEEECCBTT---BCCCCC----CCT------TEEEEEEESSCT-TSBCCC---HHHHHHHHHHTTCEEEEECCTT
T ss_pred             cceeeEEeeecccc---cchhhh----hcc------ceeEEEEccccc-cccccc---hHHHHHHhhhccceEEeeechh
Confidence            67999999998754   222222    222      799999999965 687743   8999999999999888774322


Q ss_pred             cccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCC---CCeeEEEEEecCCHHHHHHHH-------------
Q 009517          314 ENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGEC---GKRGGYMEVTGFSAEVREQIY-------------  377 (533)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~---G~riG~v~~~~~~~~~~~~l~-------------  377 (533)
                        ...+-   .+...+       .-|   |++++ +|.|+...   |--.|++.+   .++++..+-             
T Consensus       236 --al~~l---~~Pg~~-------GaD---i~~g~-~q~fg~p~g~GGP~~G~~a~---~~~l~r~lPgrivg~s~d~~G~  296 (437)
T d1wyua1         236 --SLGVL---KPPGAY-------GAD---IAVGD-GQSLGLPMGFGGPHFGFLAT---KKAFVRQLPGRLVSETVDVEGR  296 (437)
T ss_dssp             --GGGTB---CCHHHH-------TCS---EEEEE-CTTTTCCCGGGCSCCEEEEE---CGGGGGGCCSCCEEEEEBTTSC
T ss_pred             --hhhcc---cccccc-------ccc---eEeec-cceeccccCCCcCccccccc---cchhhccccccccccccccCCc
Confidence              23221   121222       245   55555 66552222   233577777   555543321             


Q ss_pred             ---------------Hhhh-ccccCChHHHHH-HHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Q 009517          378 ---------------KVAS-VNLCSNISGQIL-ASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGIT  440 (533)
Q Consensus       378 ---------------~~~~-~~~~~~~~~q~a-~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~  440 (533)
                                     +-+. ...|.+....+. +...+.        + .-.+-++++.+....+..++.+.|.+++|+.
T Consensus       297 ~~~~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~--------~-lG~~GL~~ia~~a~~~A~yl~~~L~~~~g~~  367 (437)
T d1wyua1         297 RGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLA--------A-LGPEGLREVALKSVEMAHKLHALLLEVPGVR  367 (437)
T ss_dssp             EEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHH--------H-HHHHHHHHHHHHHHHHHHHHHHHHTTSTTCE
T ss_pred             ccceeecccccccccccccccchhhHHHHHHHHHHHHhh--------h-cCcccHHHHHHHHHHHHHHHHHHhhhcCCee
Confidence                           1111 112333222221 111110        0 0123477888888899999999999988888


Q ss_pred             EecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEec--CCcCcHHHHHH
Q 009517          441 CNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTIL--PQEDKIPAIVT  518 (533)
Q Consensus       441 ~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~~~  518 (533)
                      .+.+..-|.-|+ ++.+.            +..+. .+.|.++|+.. |-..|. ..+.+.+.|++.  .+.++|+++++
T Consensus       368 ~~~~~~~f~ef~-v~~~~------------~~~~i-~k~L~d~G~~~-~~~~~~-~~~~~~lli~~TE~~tkeeiD~~v~  431 (437)
T d1wyua1         368 PFTPKPFFNEFA-LALPK------------DPEAV-RRALAERGFHG-ATPVPR-EYGENLALFAATELHEEEDLLALRE  431 (437)
T ss_dssp             ECSCSSBCSEEE-EECSS------------CHHHH-HHHHHHTTCCC-CEECCT-TSCSSEEEEECCTTCCHHHHHHHHH
T ss_pred             ccCCCCeeeEEE-EECCC------------CHHHH-HHHHHhCCCCC-Cccccc-CCCCCeEEEecCCCCCHHHHHHHHH
Confidence            655443332221 22221            12333 35566788842 111111 122347888886  77888999998


Q ss_pred             HHHHHH
Q 009517          519 RLTDFH  524 (533)
Q Consensus       519 ~l~~~l  524 (533)
                      +|++++
T Consensus       432 al~eil  437 (437)
T d1wyua1         432 ALKEVL  437 (437)
T ss_dssp             HHHHHC
T ss_pred             HHHHhC
Confidence            888763

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=98.94  E-value=7.4e-08  Score=96.88  Aligned_cols=328  Identities=15%  Similarity=0.080  Sum_probs=183.7

Q ss_pred             CHHHHHHHHHHHhcCCCCCccccCC---CcccHHHHHHHHHHHHhhcCCCCCCCCEEEcCChHHHHHHHHHHhc--cCCC
Q 009517          141 SADSIERAWQILDQIPGRATGAYSH---SQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI--RSEN  215 (533)
Q Consensus       141 p~~v~~~~~~~~~~~~~~~~~~Y~~---~~G~~~lr~aia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~--~~~g  215 (533)
                      ++.+++.+.+...     ..+-|.|   ++|.-+..=....++.+.-|.++  -|.-+-.|++.+.+.++.+..  .+.+
T Consensus        78 ~P~v~~~~~~~~T-----aYTPYQPaEiSQG~LQalfEfQtmi~eLTGMdv--aNaS~yDGatA~aeA~~ma~r~~~~~~  150 (471)
T d1wyub1          78 NPKLHEEAARLFA-----DLHPYQDPRTAQGALRLMWELGEYLKALTGMDA--ITLEPAAGAHGELTGILIIRAYHEDRG  150 (471)
T ss_dssp             CCHHHHHHHHTTS-----SCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSE--EECCCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred             CcchhhhHHHHHh-----ccCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCc--cccccchHHHHHHHHHHHHHHHhhhcc
Confidence            5667776654322     3677887   67765555455555555445332  233334555544443333221  0111


Q ss_pred             ----CeEEEcCCcCcc-hHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCCeeEEEEeCCCCCCccCCCHH
Q 009517          216 ----DGILCPIPQYPL-YSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEE  290 (533)
Q Consensus       216 ----d~Vlv~~p~~~~-~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~~~~iil~~p~NPtG~~~s~~  290 (533)
                          ..+.+..+.+.. +.......+..++.++.+..  ...|.+.++.....      ++.++++.+|++..+..-.  
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~------~~a~v~v~~p~~~g~~e~~--  220 (471)
T d1wyub1         151 EGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGPE--GEVDLEALKRELGP------HVAALMLTNPNTLGLFERR--  220 (471)
T ss_dssp             CTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBCTT--SSBCHHHHHHHCST------TEEEEEECSSCTTSCCCTT--
T ss_pred             cccccccccCCcccccceeeeeecccceeeccccccc--ccccchhhhhhhhc------cccceeeccCCCcccccch--
Confidence                234555555544 45555666788888886643  36788888877655      7889999999987665533  


Q ss_pred             HHHHHHHHHHHcCCEEEEccccccccccCCCCcccHHHHHhhcCCCCCCceEEEEecCCccCCCCC----CCeeEEEEEe
Q 009517          291 NQRAIVDFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGEKDISLVSFQSVSKGYYGEC----GKRGGYMEVT  366 (533)
Q Consensus       291 ~l~~i~~l~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~gl~----G~riG~v~~~  366 (533)
                       .+++.+++++++..+++|-+--.... +-.+   .    .+.   ..+   +++.+.++.| |.|    |--+|++.+ 
T Consensus       221 -~~~~~~~~h~~g~~~~~~~~~~~~~~-~l~~---p----~~~---g~d---iv~vg~~q~~-G~P~~~GGP~~G~~a~-  283 (471)
T d1wyub1         221 -ILEISRLCKEAGVQLYYDGANLNAIM-GWAR---P----GDM---GFD---VVHLNLHKTF-TVPHGGGGPGSGPVGV-  283 (471)
T ss_dssp             -HHHHHHHHHHHTCEEEEEGGGGGGTT-TTCC---H----HHH---TCS---EEECCTTTTT-CCCCTTSCCCCCCEEE-
T ss_pred             -hhhhHHHHHhccccccccccchhhhh-hccc---c----Ccc---ccc---cccccccccc-ccccccccccccceee-
Confidence             77888899999988887755433222 1111   0    111   123   4445666765 333    344788887 


Q ss_pred             cCCHHHHHHHHHh----------------h---hccccCChHHHH-HHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 009517          367 GFSAEVREQIYKV----------------A---SVNLCSNISGQI-LASLVMSPPKVGDESYESYCAERDGILSSLARRA  426 (533)
Q Consensus       367 ~~~~~~~~~l~~~----------------~---~~~~~~~~~~q~-a~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (533)
                        .++++.++-..                +   ....|.+....+ ++...+.        + .-.+-++++.+...++.
T Consensus       284 --~~~~~R~~PGRiV~~~~~~~~~~~~REqhIrRe~actnqaL~al~A~vYls--------l-lG~~GL~elA~~~~~~A  352 (471)
T d1wyub1         284 --KAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIR--------T-LGLEGLKKAAALAVLNA  352 (471)
T ss_dssp             --CGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHH--------H-HHHHHHHHHHHHHHHHH
T ss_pred             --hhhhhccCCCceecCCCccccccCCCcccccchhhhhhhHHHHHHHHHHHH--------H-hCchhHHHHHHHHHHHH
Confidence              77776554210                0   111243422222 2211221        0 12345788888889999


Q ss_pred             HHHHHHHhcCCCceEecCCceeEEecccCCCHHHHHHHHhcCCCChHHHHHHHHHccceEEEcCCCCCCCCCCceEEEEe
Q 009517          427 KTLEDAFNSLEGITCNKAEGAMYLFPRIQLPEKAIKAAEAEKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTI  506 (533)
Q Consensus       427 ~~l~~~L~~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~g~~~iRis~  506 (533)
                      .++.+.|++ +|++... .+-||--.-+..+.+         . +.++..+++ .++|+.- |...|. ..+++.+-|++
T Consensus       353 ~Yla~~L~~-~G~~~~~-~~~ff~EFvv~~~~~---------~-~~~~i~k~L-~~~G~~~-~~~~~p-~~~~~~llv~v  417 (471)
T d1wyub1         353 RYLKELLKE-KGYRVPY-DGPSMHEFVAQPPEG---------F-RALDLAKGL-LELGFHP-PTVYFP-LIVKEALMVEP  417 (471)
T ss_dssp             HHHHHHHHH-TTCBCSS-CSSCCSCEEEBCSTT---------C-CHHHHHHHH-HHTTCCC-CEESCS-TTSTTCEEECC
T ss_pred             HHHHHHHhh-cCceecc-CcceeeEEeecCCCC---------C-CHHHHHHHH-HHcCCCC-CcccCc-CCCCCeEEEec
Confidence            999999977 4888643 333321111333321         1 233344444 4678843 323332 23344677888


Q ss_pred             c--CCcCcHHHHHHHHHHHHHHHH
Q 009517          507 L--PQEDKIPAIVTRLTDFHKNFM  528 (533)
Q Consensus       507 ~--~~~e~i~~~~~~l~~~l~~~~  528 (533)
                      .  .|.++|+.++++|++++++..
T Consensus       418 TE~~tkedID~lv~aL~~i~~e~~  441 (471)
T d1wyub1         418 TETEAKETLEAFAEAMGALLKKPK  441 (471)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHTSCH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhhH
Confidence            5  788899999999999887654

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=83.58  E-value=5.4  Score=34.73  Aligned_cols=105  Identities=14%  Similarity=0.059  Sum_probs=63.5

Q ss_pred             CCCCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHH----HHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHH
Q 009517          188 ADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSA----SIALHGGTLVPYYLDEATGWGLETSEVKKQLEA  263 (533)
Q Consensus       188 ~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~----~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~  263 (533)
                      ++-..+++|.|+...-..+.+.|. +.|-+|++..-.-.....    ..+..|.++..+..|-.     |.+++++.++.
T Consensus         7 l~gK~alITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~-----~~~~v~~~~~~   80 (260)
T d1h5qa_           7 FVNKTIIVTGGNRGIGLAFTRAVA-AAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVS-----NTDIVTKTIQQ   80 (260)
T ss_dssp             CTTEEEEEETTTSHHHHHHHHHHH-HTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTT-----CHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCC-----CHHHHHHHHHH
Confidence            334456666655555555556666 678777776655444333    33456888888887643     78888888876


Q ss_pred             HHhcCCCeeEEEEeCC-CCCCc--cCCCHHHHHHHHHHH
Q 009517          264 AKAKGITVRALVVINP-GNPTG--QVLAEENQRAIVDFC  299 (533)
Q Consensus       264 ~~~~g~~~~~iil~~p-~NPtG--~~~s~~~l~~i~~l~  299 (533)
                      ..+.-.+...++ +|. .++.+  ..++.++|+++.++-
T Consensus        81 ~~~~~g~iDilV-nnAg~~~~~~~~~~~~~~~~~~~~~N  118 (260)
T d1h5qa_          81 IDADLGPISGLI-ANAGVSVVKPATELTHEDFAFVYDVN  118 (260)
T ss_dssp             HHHHSCSEEEEE-ECCCCCCCSCGGGCCHHHHHHHHHHH
T ss_pred             HHHHhCCCcEec-ccccccccCCHHHhcccccccccccc
Confidence            644333566554 544 23222  356888888877653

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.04  E-value=3.1  Score=36.15  Aligned_cols=101  Identities=16%  Similarity=0.029  Sum_probs=58.6

Q ss_pred             CCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCC
Q 009517          191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT  270 (533)
Q Consensus       191 ~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~  270 (533)
                      ..+++|.|+...-..+.+.|. +.|-+|++..-.-.......+..+.+...+..|-     -|.+.+++.++...+...+
T Consensus         7 K~alITGas~GIG~aia~~la-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv-----~~~~~v~~~~~~~~~~~g~   80 (244)
T d1nffa_           7 KVALVSGGARGMGASHVRAMV-AEGAKVVFGDILDEEGKAMAAELADAARYVHLDV-----TQPAQWKAAVDTAVTAFGG   80 (244)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCT-----TCHHHHHHHHHHHHHHHSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHhhCcceEEEeec-----CCHHHHHHHHHHHHHHhCC
Confidence            345555444444444455565 6788888765443344555566677777777763     3778888777665433224


Q ss_pred             eeEEEEeCC-CCCCcc--CCCHHHHHHHHHH
Q 009517          271 VRALVVINP-GNPTGQ--VLAEENQRAIVDF  298 (533)
Q Consensus       271 ~~~iil~~p-~NPtG~--~~s~~~l~~i~~l  298 (533)
                      ...+ ++|. ..+.+.  .++.++|++..++
T Consensus        81 idil-innAG~~~~~~~~~~~~~~~~~~~~v  110 (244)
T d1nffa_          81 LHVL-VNNAGILNIGTIEDYALTEWQRILDV  110 (244)
T ss_dssp             CCEE-EECCCCCCCBCTTTSCHHHHHHHHHH
T ss_pred             CeEE-EECCcccCCCchhhCCHHHHhHHhhc
Confidence            5544 4544 333332  4577778877654

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=82.88  E-value=3.6  Score=35.58  Aligned_cols=101  Identities=14%  Similarity=0.090  Sum_probs=59.6

Q ss_pred             CCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCC
Q 009517          191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT  270 (533)
Q Consensus       191 ~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~  270 (533)
                      ..+++|.|+...-..+.+.|. +.|-+|++..-.-.......+..+.+...+.+|-.     |.+++++.++...+.-.+
T Consensus         5 K~alITGas~GIG~a~a~~l~-~~G~~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~-----~~~~v~~~~~~~~~~~g~   78 (243)
T d1q7ba_           5 KIALVTGASRGIGRAIAETLA-ARGAKVIGTATSENGAQAISDYLGANGKGLMLNVT-----DPASIESVLEKIRAEFGE   78 (243)
T ss_dssp             CEEEESSCSSHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTT-----CHHHHHHHHHHHHHHTCS
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHHHHHhCCCCcEEEEEec-----CHHHhhhhhhhhhcccCC
Confidence            345555555444444555565 67888887664434445555666777777776632     678888777766443335


Q ss_pred             eeEEEEeCC-CCCCc--cCCCHHHHHHHHHH
Q 009517          271 VRALVVINP-GNPTG--QVLAEENQRAIVDF  298 (533)
Q Consensus       271 ~~~iil~~p-~NPtG--~~~s~~~l~~i~~l  298 (533)
                      ...++ +|. ..+.+  ...+.++|+++.++
T Consensus        79 iDilV-nnAg~~~~~~~~~~~~~~~~~~~~v  108 (243)
T d1q7ba_          79 VDILV-NNAGITRDNLLMRMKDEEWNDIIET  108 (243)
T ss_dssp             CSEEE-ECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred             cceeh-hhhhhccccccccccccccccccce
Confidence            65554 554 22222  25577777776653

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=82.81  E-value=2.1  Score=37.09  Aligned_cols=104  Identities=13%  Similarity=0.093  Sum_probs=62.4

Q ss_pred             CCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCC
Q 009517          190 PNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGI  269 (533)
Q Consensus       190 ~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~  269 (533)
                      -..+++|.|+...-..+.+.|. +.|-+|++..-.-.......+..|.++..+..|-.     |.+.+++.++...+.-.
T Consensus         5 gK~alItGas~GIG~aia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls-----~~~~i~~~~~~i~~~~g   78 (241)
T d2a4ka1           5 GKTILVTGAASGIGRAALDLFA-REGASLVAVDREERLLAEAVAALEAEAIAVVADVS-----DPKAVEAVFAEALEEFG   78 (241)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTT-----SHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHcCCceEEEEecCC-----CHHHHHHHHHHHHHHhC
Confidence            3456666666656666666776 68888887665444455566777888888887643     67888877776543323


Q ss_pred             CeeEEEEeCCCCCCcc--CCCHHHHHHHHHHH
Q 009517          270 TVRALVVINPGNPTGQ--VLAEENQRAIVDFC  299 (533)
Q Consensus       270 ~~~~iil~~p~NPtG~--~~s~~~l~~i~~l~  299 (533)
                      +...++-+...++.+.  ..+.++|++..++.
T Consensus        79 ~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n  110 (241)
T d2a4ka1          79 RLHGVAHFAGVAHSALSWNLPLEAWEKVLRVN  110 (241)
T ss_dssp             CCCEEEEGGGGTTTTC----CHHHHHHHHHHH
T ss_pred             CccEeccccccccccchhhhhccccccccccc
Confidence            5555544322333332  45666676655543

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=82.65  E-value=2.4  Score=37.13  Aligned_cols=101  Identities=12%  Similarity=0.074  Sum_probs=61.9

Q ss_pred             CCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCC
Q 009517          191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT  270 (533)
Q Consensus       191 ~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~  270 (533)
                      ..+++|.|++..-..+.+.|. +.|-+|++..-.-.......+..|.++..+++|-.     |.+++++.++...+.-.+
T Consensus         6 K~alVTGas~GIG~aia~~la-~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt-----~~~~v~~~~~~~~~~~g~   79 (256)
T d1k2wa_           6 KTALITGSARGIGRAFAEAYV-REGARVAIADINLEAARATAAEIGPAACAIALDVT-----DQASIDRCVAELLDRWGS   79 (256)
T ss_dssp             EEEEEETCSSHHHHHHHHHHH-HTTEEEEEEESCHHHHHHHHHHHCTTEEEEECCTT-----CHHHHHHHHHHHHHHHSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHhCCceEEEEeeCC-----CHHHHHHHHHHHHHHhCC
Confidence            345666655555555555665 67877777654434455666777888888887743     778888877765333225


Q ss_pred             eeEEEEeCC-CCCCc--cCCCHHHHHHHHHH
Q 009517          271 VRALVVINP-GNPTG--QVLAEENQRAIVDF  298 (533)
Q Consensus       271 ~~~iil~~p-~NPtG--~~~s~~~l~~i~~l  298 (533)
                      ...+ ++|. ..+.+  ..++.++|+++.++
T Consensus        80 iDil-VnnAg~~~~~~~~~~~~~~~~~~~~v  109 (256)
T d1k2wa_          80 IDIL-VNNAALFDLAPIVEITRESYDRLFAI  109 (256)
T ss_dssp             CCEE-EECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred             ccEE-EeecccccccccccCCHHHHHhhhce
Confidence            5544 4544 22222  25577888877664

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=81.90  E-value=4.3  Score=35.33  Aligned_cols=101  Identities=17%  Similarity=0.050  Sum_probs=59.1

Q ss_pred             CCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCCC
Q 009517          191 NDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGIT  270 (533)
Q Consensus       191 ~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~~  270 (533)
                      ..+++|.|+...-..+.+.|. ..|-+|++.+-.-.......+..+.+...+..|-     -|.+++++.++...+.-.+
T Consensus         7 K~alITGas~GIG~aia~~la-~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv-----~~~~~~~~~~~~~~~~~g~   80 (253)
T d1hxha_           7 KVALVTGGASGVGLEVVKLLL-GEGAKVAFSDINEAAGQQLAAELGERSMFVRHDV-----SSEADWTLVMAAVQRRLGT   80 (253)
T ss_dssp             CEEEETTTTSHHHHHHHHHHH-HTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCT-----TCHHHHHHHHHHHHHHHCS
T ss_pred             CEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHhCCCeEEEEeec-----CCHHHHHHHHHHHHHHhCC
Confidence            345555444444444455555 6788888876544445556666788888877663     3677777777665333224


Q ss_pred             eeEEEEeCC-CCCCcc--CCCHHHHHHHHHH
Q 009517          271 VRALVVINP-GNPTGQ--VLAEENQRAIVDF  298 (533)
Q Consensus       271 ~~~iil~~p-~NPtG~--~~s~~~l~~i~~l  298 (533)
                      ...+ ++|. ....+.  .++.++|++..++
T Consensus        81 iDil-VnnAG~~~~~~~~~~~~~~~~~~~~v  110 (253)
T d1hxha_          81 LNVL-VNNAGILLPGDMETGRLEDFSRLLKI  110 (253)
T ss_dssp             CCEE-EECCCCCCCBCTTTCCHHHHHHHHHH
T ss_pred             CCeE-EecccccCCCCcccCCHHHHHHHHHH
Confidence            5544 4544 232232  5677788877664

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=81.55  E-value=3.3  Score=36.20  Aligned_cols=102  Identities=16%  Similarity=0.088  Sum_probs=60.2

Q ss_pred             CCCEEEcCChHHHHHHHHHHhccCCCCeEEEcCCcCcchHHHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHhcCC
Q 009517          190 PNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGI  269 (533)
Q Consensus       190 ~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~~g~  269 (533)
                      -..+++|.|+...-..+.+.|. +.|-+|++..-.-.......+..|.++..+.+|-.     |.+++++.++...+.-.
T Consensus         5 gK~alVTGas~GIG~aia~~la-~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~-----~~~~v~~~~~~~~~~~g   78 (254)
T d1hdca_           5 GKTVIITGGARGLGAEAARQAV-AAGARVVLADVLDEEGAATARELGDAARYQHLDVT-----IEEDWQRVVAYAREEFG   78 (254)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTT-----CHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCcCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHhCCceEEEEcccC-----CHHHHHHHHHHHHHHcC
Confidence            3445666555544445555565 67888887764444455566667777888877643     67888877766533222


Q ss_pred             CeeEEEEeCCC-CCCc--cCCCHHHHHHHHHH
Q 009517          270 TVRALVVINPG-NPTG--QVLAEENQRAIVDF  298 (533)
Q Consensus       270 ~~~~iil~~p~-NPtG--~~~s~~~l~~i~~l  298 (533)
                      +...+ ++|.. .+.+  ...+.++|+++.++
T Consensus        79 ~iDil-VnnAg~~~~~~~~~~~~~~~~~~~~v  109 (254)
T d1hdca_          79 SVDGL-VNNAGISTGMFLETESVERFRKVVEI  109 (254)
T ss_dssp             CCCEE-EECCCCCCCSCGGGSCHHHHHHHHHH
T ss_pred             CccEE-EecCccccccccccccccccchhhhH
Confidence            45544 45542 2222  35677777776554

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=80.83  E-value=6.1  Score=34.20  Aligned_cols=102  Identities=14%  Similarity=0.149  Sum_probs=58.2

Q ss_pred             CCEEEcCChHHHHHH-HHHHhccCCCCeEEEcCCcCcchH---HHHHHhCCeEEEEecCCCCCCCCCHHHHHHHHHHHHh
Q 009517          191 NDIFLTDGASPAVHM-MMQLLIRSENDGILCPIPQYPLYS---ASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKA  266 (533)
Q Consensus       191 ~~i~~t~G~~~al~~-~~~~l~~~~gd~Vlv~~p~~~~~~---~~~~~~g~~~~~v~~~~~~~~~ld~~~l~~~i~~~~~  266 (533)
                      +.|++.+|++.+|-. +.+.|. +.|.+|++..-.-....   ..++..|.++..+..|-.     |.+++++.++...+
T Consensus        10 nKvalITGas~GIG~a~a~~la-~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt-----~~~~v~~~~~~~~~   83 (251)
T d2c07a1          10 NKVALVTGAGRGIGREIAKMLA-KSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVS-----KKEEISEVINKILT   83 (251)
T ss_dssp             SCEEEEESTTSHHHHHHHHHHT-TTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTT-----CHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCC-----CHHHHHHHHHHHHH
Confidence            345555555555554 444555 77888877654322222   233446778888887643     78888888777544


Q ss_pred             cCCCeeEEEEeCCCCCCc--cCCCHHHHHHHHHH
Q 009517          267 KGITVRALVVINPGNPTG--QVLAEENQRAIVDF  298 (533)
Q Consensus       267 ~g~~~~~iil~~p~NPtG--~~~s~~~l~~i~~l  298 (533)
                      ...+...++-+....+.+  ...+.++|+++.++
T Consensus        84 ~~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~v  117 (251)
T d2c07a1          84 EHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRT  117 (251)
T ss_dssp             HCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred             hcCCceeeeeccccccccccccccHHHHhhhhee
Confidence            333565554433222222  24566777776654