Citrus Sinensis ID: 009529


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530--
MTLAHSPRGPSPMAAFPRSLSSILVSVGGLAMFLVFASLLLVSSPIGSTVRVYFTGFDKKLDLPISPNNWSFIDNDVLPLEPSLKDAEKSNSSSVDLSSGSRKEEEARNGSVAFSYAKDVEIGKGHLGSSENSGSIYIGSNNTNNLAKLAMPALPSPPPSNNNTQIDFVASGCDLYHGSWFYDSSGPVYTNNTCPVITQMQNCQGNGRPDKEYENWRWRPAECDLPRFDGKKFLELMRGKTLAFIGDSVARNQMESMLCLLWQVEVPKNRGNRRMQRWYFKSTSVTIVRIWSSWLVKKINEPFDFAPAGVDKLHLDAPDENFMEFVPSFDVIVLSSGHWFAKQSVYILNNEIVGGQLWWPDKSRPMKVNNVDAFGISVETIMTAIATHPNYTGLTIVRSYSPDHYEGGTWNTGGSCTGKEKPLAVGELVKNGFTEVMHEKQVAGFNNAIKKATNKSKLRLMDITEAFGYRHDGHPGPYRNPDPNKITKRGPDGRPPPQDCLHWCMPGPVDTWNELVLEIIRREFEGNQSSLS
ccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccEEcccccccccccHHHHHHHHcccEEEEEEccccHHHHHHHHHHHccccccccccccccEEEEEEEccEEEEEEEEEHHHcccccccccccccEEEEEccccccHHHHccccccEEEEccccccccccccccccEEEccEEEcccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccc
cccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccHHcEEEEcccccccccccHHHHHHHHcccEEEEEcccHcHcHHHHHHHHHHHcccccccccccEEEEEEEcccEEEEEEEccEEEEEcccccccccccEEEEEEcccHHHHHHHcccccEEEEEccEEEEcccEEEEccEEEccccccccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEEcHHHHHccccccccccccccccccHHHccccccccccccccccccccHHHHHHHHHHHHHHcccccccc
mtlahsprgpspmaafprSLSSILVSVGGLAMFLVFASLLLvsspigstvrVYFTgfdkkldlpispnnwsfidndvlplepslkdaeksnsssvdlssgsrkeeearngsvafsyakdveigkghlgssensgsiyigsnntnnlaklampalpspppsnnntqidfvasgcdlyhgswfydssgpvytnntcpvitqmqncqgngrpdkeyenwrwrpaecdlprfdgkKFLELMRGKTLAFIGDSVARNQMESMLCLLWqvevpknrgnrrmqrwyfkSTSVTIVRIWSSWLVKKinepfdfapagvdklhldapdenfmefvPSFDVIVLSSGHWFAKQSVYILNNeivggqlwwpdksrpmkvnnvdAFGISVETIMTAIathpnytgltivrsyspdhyeggtwntggsctgkekplavGELVKNGFTEVMHEKQVAGFNNAIKKATNKSKLRLMDITEafgyrhdghpgpyrnpdpnkitkrgpdgrpppqdclhwcmpgpvdtWNELVLEIIRREFegnqssls
mtlahsprgpspmaaFPRSLSSILVSVGGLAMFLVFASLLLVSSPIGSTVRVYFTGFDKKLDLPISPNNWSFIDNDVLPLEPslkdaeksnsssvdlssgsrkeeearngsvafsyAKDVEIGKghlgssensgsIYIGSNNTNNLAKLAMPALPSPPPSNNNTQIDFVASGCDLYHGSWFYDSSGPVYTNNTCPVITQMQNCQGNGRPDKEYENWRWRPAECDLPRFDGKKFLELMRGKTLAFIGDSVARNQMESMLCLLWQVevpknrgnrrmqrwyfkstsvtiVRIWSSWLVKKINEPFDFAPAGVDKLHLDAPDENFMEFVPSFDVIVLSSGHWFAKQSVYILNNEIVGGQLWWPDKSRPMKVNNVDAFGISVETIMTAIATHPNYTGLTIVRSYSPDHYEGGTWNTGGSCTGKEKPLAVGELVKNGFTEVMHekqvagfnnaiKKATNKSKLRLMDITEAfgyrhdghpgpyrnpdpnKITKRGPDGRPPPQDCLHWCMPGPVDTWNELVLEIIRRefegnqssls
MTLAHSPRGPSPMAAFPRslssilvsvgglamflvfaslllvsSPIGSTVRVYFTGFDKKLDLPISPNNWSFIDNDVLPLEPSLKDAEKsnsssvdlssgsRKEEEARNGSVAFSYAKDVEIGKGHLGSSENSGSIYIGSNNTNNlaklampalpspppsnnnTQIDFVASGCDLYHGSWFYDSSGPVYTNNTCPVITQMQNCQGNGRPDKEYENWRWRPAECDLPRFDGKKFLELMRGKTLAFIGDSVARNQMESMLCLLWQVEVPKNRGNRRMQRWYFKSTSVTIVRIWSSWLVKKINEPFDFAPAGVDKLHLDAPDENFMEFVPSFDVIVLSSGHWFAKQSVYILNNEIVGGQLWWPDKSRPMKVNNVDAFGISVETIMTAIATHPNYTGLTIVRSYSPDHYEGGTWNTGGSCTGKEKPLAVGELVKNGFTEVMHEKQVAGFNNAIKKATNKSKLRLMDITEAFGYRHDGHPGPYRNPDPNKITKRGPDGRPPPQDCLHWCMPGPVDTWNELVLEIIRREFEGNQSSLS
*******************LSSILVSVGGLAMFLVFASLLLVSSPIGSTVRVYFTGFDKKLDLPISPNNWSFIDNDVL***************************************************************************************IDFVASGCDLYHGSWFYDSSGPVYTNNTCPVITQMQNCQGNGRPDKEYENWRWRPAECDLPRFDGKKFLELMRGKTLAFIGDSVARNQMESMLCLLWQVEVPKNRGNRRMQRWYFKSTSVTIVRIWSSWLVKKINEPFDFAPAGVDKLHLDAPDENFMEFVPSFDVIVLSSGHWFAKQSVYILNNEIVGGQLWWPDKSRPMKVNNVDAFGISVETIMTAIATHPNYTGLTIVRSYSPDHYEGGTWNTGGSCTGKEKPLAVGELVKNGFTEVMHEKQVAGFNNAIKKATNKSKLRLMDITEAFGY*****************************DCLHWCMPGPVDTWNELVLEIIRRE*********
**************AFPRSLSSILVSVGGLAMFLVFASLLLVSSPIGSTVRV************************************************************************************************************************CDLYHGSWFYDSSGPVYTNNTCPVITQMQNCQGNGRPDKEYENWRWRPAECDLPRFDGKKFLELMRGKTLAFIGDSVARNQMESMLCLLWQVEVPKNRGNRRMQRWYFKSTSVTIVRIWSSWLVKKINE***FAPAGVDKLHLDAPDENFMEFVPSFDVIVLSSGHWFAKQSVYILNNEIVGGQLWWPDKSRPMKVNNVDAFGISVETIMTAIATHPNYTGLTIVRSYSPDHYEGGTWNTGGSCTGKEKPLAVGELVKNGFTEVMHEKQVAGFNNAIKKATNKSKLRLMDITEAFGYRHDGHPGPYRNPDPN***********PPQDCLHWCMPGPVDTWNELVL***************
************MAAFPRSLSSILVSVGGLAMFLVFASLLLVSSPIGSTVRVYFTGFDKKLDLPISPNNWSFIDNDVLPLEPSL*************************GSVAFSYAKDVEIGKGHLGSSENSGSIYIGSNNTNNLAKLAMPALPSPPPSNNNTQIDFVASGCDLYHGSWFYDSSGPVYTNNTCPVITQMQNCQGNGRPDKEYENWRWRPAECDLPRFDGKKFLELMRGKTLAFIGDSVARNQMESMLCLLWQVEVPKNRGNRRMQRWYFKSTSVTIVRIWSSWLVKKINEPFDFAPAGVDKLHLDAPDENFMEFVPSFDVIVLSSGHWFAKQSVYILNNEIVGGQLWWPDKSRPMKVNNVDAFGISVETIMTAIATHPNYTGLTIVRSYSPDHYEGGTWNTGGSCTGKEKPLAVGELVKNGFTEVMHEKQVAGFNNAIKKATNKSKLRLMDITEAFGYRHDGHPGPYRNPDPNKITKRGPDGRPPPQDCLHWCMPGPVDTWNELVLEIIRREF********
***********PMAAFPRSLSSILVSVGGLAMFLVFASLLLVSSPIG**VR***********************************************************************************************************************SGCDLYHGSWFYDSSGPVYTNNTCPVITQMQNCQGNGRPDKEYENWRWRPAECDLPRFDGKKFLELMRGKTLAFIGDSVARNQMESMLCLLWQVEVPKNRGNRRMQRWYFKSTSVTIVRIWSSWLVKKINEPFDFAPAGVDKLHLDAPDENFMEFVPSFDVIVLSSGHWFAKQSVYILNNEIVGGQLWWPDKSRPMKVNNVDAFGISVETIMTAIATHPNYTGLTIVRSYSPDHYEGGTWNTGGSCTGKEKPLAVGELVKNGFTEVMHEKQVAGFNNAIKKATNKSKLRLMDITEAFGYRHDGHPGPYRNPDPNKITKRGPDGRPPPQDCLHWCMPGPVDTWNELVLEIIRREF********
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTLAHSPRGPSPMAAFPRSLSSILVSVGGLAMFLVFASLLLVSSPIGSTVRVYFTGFDKKLDLPISPNNWSFIDNDVLPLEPSLKDAEKSNSSSVDLSSGSRKEEEARNGSVAFSYAKDVEIGKGHLGSSENSGSIYIGSNNTNNLAKLAMPALPSPPPSNNNTQIDFVASGCDLYHGSWFYDSSGPVYTNNTCPVITQMQNCQGNGRPDKEYENWRWRPAECDLPRFDGKKFLELMRGKTLAFIGDSVARNQMESMLCLLWQVEVPKNRGNRRMQRWYFKSTSVTIVRIWSSWLVKKINEPFDFAPAGVDKLHLDAPDENFMEFVPSFDVIVLSSGHWFAKQSVYILNNEIVGGQLWWPDKSRPMKVNNVDAFGISVETIMTAIATHPNYTGLTIVRSYSPDHYEGGTWNTGGSCTGKEKPLAVGELVKNGFTEVMHEKQVAGFNNAIKKATNKSKLRLMDITEAFGYRHDGHPGPYRNPDPNKITKRGPDGRPPPQDCLHWCMPGPVDTWNELVLEIIRREFEGNQSSLS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query532
225455567544 PREDICTED: uncharacterized protein LOC10 0.968 0.946 0.686 0.0
147782963539 hypothetical protein VITISV_014863 [Viti 0.960 0.948 0.687 0.0
255539685589 conserved hypothetical protein [Ricinus 0.988 0.893 0.635 0.0
356533731587 PREDICTED: uncharacterized protein LOC10 0.977 0.885 0.609 0.0
449435194571 PREDICTED: uncharacterized protein LOC10 0.953 0.887 0.618 0.0
356574791605 PREDICTED: uncharacterized protein LOC10 0.977 0.859 0.598 0.0
357504083580 hypothetical protein MTR_7g034610 [Medic 0.969 0.889 0.603 0.0
296084124542 unnamed protein product [Vitis vinifera] 0.793 0.778 0.745 0.0
224120202472 predicted protein [Populus trichocarpa] 0.672 0.758 0.828 0.0
297803586534 hypothetical protein ARALYDRAFT_914043 [ 0.937 0.934 0.606 0.0
>gi|225455567|ref|XP_002268776.1| PREDICTED: uncharacterized protein LOC100244660 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  756 bits (1952), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/555 (68%), Positives = 427/555 (76%), Gaps = 40/555 (7%)

Query: 1   MTLAHSPRGPSPMAAFPRSLSSILVSVGGLAMFLVFASLLLVSSPIGSTVRVYFTGFDK- 59
           MTLA SPRG   M+AFPRSLSSI VSVGGLA+FL+FAS LL+S PIGSTVR YF G D  
Sbjct: 1   MTLA-SPRGFPTMSAFPRSLSSIAVSVGGLALFLIFASCLLLSYPIGSTVRGYFYGDDSG 59

Query: 60  KLDLPISPNNWSFID----------NDVLPLEPSLK--------------DAEKSNSSSV 95
           K+ L    +N + ID          N  LP  PS K              D   +  + V
Sbjct: 60  KMALW---DNETIIDTRLVDNVDLVNKNLPANPSSKVPISSSGQLIDSGTDGLVNEPAKV 116

Query: 96  DLSSGSRKEEEARNGSVAFSYAKDVEIGKG-HLGSSENSGSIYIGSNNTNNLAKLAMPAL 154
            LSS +  +EE  +  V+ + A +VEI     +    NS     GSN T+       PA 
Sbjct: 117 PLSSSNITQEEEISSYVSSNIADNVEIASPLSMALKNNSDVTVAGSNPTS-------PAS 169

Query: 155 PSPPPSNNNTQIDFVASGCDLYHGSWFYDSSGPVYTNNTCPVITQMQNCQGNGRPDKEYE 214
           PS P     + +D   SGCDLYHGSWFYDSSGP YTNNTCPV+TQMQNCQGNGRPDKEYE
Sbjct: 170 PSLPEDVGTSLVD---SGCDLYHGSWFYDSSGPSYTNNTCPVLTQMQNCQGNGRPDKEYE 226

Query: 215 NWRWRPAECDLPRFDGKKFLELMRGKTLAFIGDSVARNQMESMLCLLWQVEVPKNRGNRR 274
           NWRW+P++CDLP+FD KKFLELMRGKTLAFIGDSVARNQMESMLCLLWQVEVPKNRGNR+
Sbjct: 227 NWRWKPSQCDLPKFDAKKFLELMRGKTLAFIGDSVARNQMESMLCLLWQVEVPKNRGNRK 286

Query: 275 MQRWYFKSTSVTIVRIWSSWLVKKINEPFDFAPAGVDKLHLDAPDENFMEFVPSFDVIVL 334
           MQRW+FKSTSV IVRIWSSWLV +  EP DFAP GV KLHLD PD  FME +P FDV+VL
Sbjct: 287 MQRWHFKSTSVMIVRIWSSWLVHQTTEPLDFAPEGVVKLHLDIPDNVFMEHIPKFDVVVL 346

Query: 335 SSGHWFAKQSVYILNNEIVGGQLWWPDKSRPMKVNNVDAFGISVETIMTAIATHPNYTGL 394
           SSGHWFAKQSVY+L NEIVGGQLWWPDKSR MK+NN++AFGISVET + A+ THPNYTGL
Sbjct: 347 SSGHWFAKQSVYVLKNEIVGGQLWWPDKSRSMKINNIEAFGISVETSLAALVTHPNYTGL 406

Query: 395 TIVRSYSPDHYEGGTWNTGGSCTGKEKPLAVGELVKNGFTEVMHEKQVAGFNNAIKKATN 454
           TIVRS+SPDHYEGG WNTGGSCTGK +P + G+LV+NGFT +MHEKQV GF+ AIKKATN
Sbjct: 407 TIVRSFSPDHYEGGAWNTGGSCTGKVRPASAGDLVENGFTNIMHEKQVMGFDRAIKKATN 466

Query: 455 KSKLRLMDITEAFGYRHDGHPGPYRNPDPNKITKRGPDGRPPPQDCLHWCMPGPVDTWNE 514
           KSKLRLMDITEAFGYRHDGHPGPYR+PDPNKIT+RGPDG+PPPQDCLHWCMPGPVDTWNE
Sbjct: 467 KSKLRLMDITEAFGYRHDGHPGPYRSPDPNKITQRGPDGKPPPQDCLHWCMPGPVDTWNE 526

Query: 515 LVLEIIRREFEGNQS 529
            VLE IRREF G +S
Sbjct: 527 FVLETIRREFNGKES 541




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147782963|emb|CAN70095.1| hypothetical protein VITISV_014863 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255539685|ref|XP_002510907.1| conserved hypothetical protein [Ricinus communis] gi|223550022|gb|EEF51509.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356533731|ref|XP_003535413.1| PREDICTED: uncharacterized protein LOC100777725 [Glycine max] Back     alignment and taxonomy information
>gi|449435194|ref|XP_004135380.1| PREDICTED: uncharacterized protein LOC101207313 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356574791|ref|XP_003555528.1| PREDICTED: uncharacterized protein LOC100788111 [Glycine max] Back     alignment and taxonomy information
>gi|357504083|ref|XP_003622330.1| hypothetical protein MTR_7g034610 [Medicago truncatula] gi|355497345|gb|AES78548.1| hypothetical protein MTR_7g034610 [Medicago truncatula] Back     alignment and taxonomy information
>gi|296084124|emb|CBI24512.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224120202|ref|XP_002318271.1| predicted protein [Populus trichocarpa] gi|222858944|gb|EEE96491.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297803586|ref|XP_002869677.1| hypothetical protein ARALYDRAFT_914043 [Arabidopsis lyrata subsp. lyrata] gi|297315513|gb|EFH45936.1| hypothetical protein ARALYDRAFT_914043 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query532
TAIR|locus:2153077501 YLS7 "AT5G51640" [Arabidopsis 0.691 0.734 0.776 9.8e-172
TAIR|locus:2138043533 TBL18 "AT4G25360" [Arabidopsis 0.659 0.658 0.801 3e-170
TAIR|locus:2136113432 TBL23 "AT4G11090" [Arabidopsis 0.654 0.805 0.379 2e-65
TAIR|locus:2128489430 TBL24 "AT4G23790" [Arabidopsis 0.654 0.809 0.371 1.1e-64
TAIR|locus:2020628416 TBL27 "TRICHOME BIREFRINGENCE- 0.622 0.795 0.392 2.9e-64
TAIR|locus:2035342456 TBL25 "AT1G01430" [Arabidopsis 0.656 0.765 0.366 1.6e-63
TAIR|locus:2146077426 TBL19 "AT5G15900" [Arabidopsis 0.633 0.791 0.375 5.4e-63
TAIR|locus:2146062526 TBL21 "AT5G15890" [Arabidopsis 0.622 0.629 0.378 2.3e-62
TAIR|locus:2125048442 TBL26 "AT4G01080" [Arabidopsis 0.642 0.773 0.366 3.9e-60
TAIR|locus:2091388414 TBL22 "AT3G28150" [Arabidopsis 0.631 0.811 0.344 5.9e-57
TAIR|locus:2153077 YLS7 "AT5G51640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1646 (584.5 bits), Expect = 9.8e-172, Sum P(2) = 9.8e-172
 Identities = 289/372 (77%), Positives = 328/372 (88%)

Query:   164 TQIDFVASGCDLYHGSWFYDSSGPVYTNNTCPVITQMQNCQGNGRPDKEYENWRWRPAEC 223
             TQ D V + CDLYHG+WFYD  GP+YTNN+CP++TQMQNCQGNGRPDK YENWRW+P++C
Sbjct:   130 TQ-DHVETECDLYHGNWFYDPMGPLYTNNSCPLLTQMQNCQGNGRPDKGYENWRWKPSQC 188

Query:   224 DLPRFDGKKFLELMRGKTLAFIGDSVARNQMESMLCLLWQVEVPKNRGNRRMQRWYFKST 283
             DLPRFD KKFLELMRGKTLAFIGDSVARNQMESM+CLLWQVE P NRGNR+MQRWYF+S+
Sbjct:   189 DLPRFDAKKFLELMRGKTLAFIGDSVARNQMESMMCLLWQVETPVNRGNRKMQRWYFRSS 248

Query:   284 SVTIVRIWSSWLVKKINEPFDFAPAGVDKLHLDAPDENFMEFVPSFDVIVLSSGHWFAKQ 343
             SV I R+WSSWLV + NEPF FA  GV KL LD PDE  +E +P+FDV+VLSSGHWFAKQ
Sbjct:   249 SVMIARMWSSWLVHQFNEPFGFATDGVTKLKLDQPDERIIEALPNFDVVVLSSGHWFAKQ 308

Query:   344 SVYILNNEIVGGQLWWPDKSRPMKVNNVDAFGISVETIMTAIATHPNYTGLTIVRSYSPD 403
             SVYILN++IVGGQLWWPDKS+P K+NNV+AFGISVETI+ A+A HPNYTGLTI+R++SPD
Sbjct:   309 SVYILNDQIVGGQLWWPDKSKPEKINNVEAFGISVETIIKAMAKHPNYTGLTILRTWSPD 368

Query:   404 HYEGGTWNTGGSCTGKEKPLAVGELVKNGFTEVMHEKQVAGFNNAIK--KATNKSK-LRL 460
             HYEGG WNTGGSCTGK +PL  G LV NGFTE+MHEKQ  GF+ A+   K  N+SK L+L
Sbjct:   369 HYEGGAWNTGGSCTGKVEPLPPGNLVTNGFTEIMHEKQATGFHRAVADDKLGNRSKKLKL 428

Query:   461 MDITEAFGYRHDGHPGPYRNPDPNKITKRGPDGRPPPQDCLHWCMPGPVDTWNELVLEII 520
             MDITEAFGYRHDGHPGPYR+PDP KITKRGPDG+PPPQDCLHWCMPGPVDTWNE+VLEII
Sbjct:   429 MDITEAFGYRHDGHPGPYRSPDPKKITKRGPDGQPPPQDCLHWCMPGPVDTWNEMVLEII 488

Query:   521 RREFEGNQSSLS 532
             RR+FEG QSS S
Sbjct:   489 RRDFEGRQSSPS 500


GO:0010150 "leaf senescence" evidence=IEP
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
GO:0006865 "amino acid transport" evidence=RCA
GO:0007165 "signal transduction" evidence=RCA
GO:0009414 "response to water deprivation" evidence=RCA
GO:0009611 "response to wounding" evidence=RCA
GO:0009723 "response to ethylene stimulus" evidence=RCA
GO:0009733 "response to auxin stimulus" evidence=RCA
GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA
GO:0009753 "response to jasmonic acid stimulus" evidence=RCA
GO:0010260 "organ senescence" evidence=RCA
GO:0035556 "intracellular signal transduction" evidence=RCA
GO:0042538 "hyperosmotic salinity response" evidence=RCA
TAIR|locus:2138043 TBL18 "AT4G25360" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2136113 TBL23 "AT4G11090" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2128489 TBL24 "AT4G23790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020628 TBL27 "TRICHOME BIREFRINGENCE-LIKE 27" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035342 TBL25 "AT1G01430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2146077 TBL19 "AT5G15900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2146062 TBL21 "AT5G15890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125048 TBL26 "AT4G01080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091388 TBL22 "AT3G28150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query532
pfam13839270 pfam13839, PC-Esterase, GDSL/SGNH-like Acyl-Estera 5e-97
PLN02629387 PLN02629, PLN02629, powdery mildew resistance 5 4e-41
pfam1441655 pfam14416, PMR5N, PMR5 N terminal Domain 3e-26
>gnl|CDD|222410 pfam13839, PC-Esterase, GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p Back     alignment and domain information
 Score =  294 bits (755), Expect = 5e-97
 Identities = 118/300 (39%), Positives = 164/300 (54%), Gaps = 34/300 (11%)

Query: 225 LPRFDGKKFLELMRGKTLAFIGDSVARNQMESMLCLLWQVEVPKNR---GNRRMQRWYFK 281
           LPRFD ++FLE +RGK + F+GDS++RNQ ES++CLL QVE PK +    + R+ R+ FK
Sbjct: 1   LPRFDAQQFLERLRGKRVVFVGDSLSRNQWESLVCLLSQVEPPKGKTLERDGRLFRFRFK 60

Query: 282 STSVTIVRIWSSWLVKKINEPFDFAPAGVDKLHLDAPDENFMEFVPSFDVIVLSSGHWFA 341
             +VTI   WS +LV+  N     A  G   L LD+ DE + +  P  DV+V +SGHW+ 
Sbjct: 61  DYNVTIEFYWSPFLVESDN-----AEEGKRVLKLDSIDEKWSKLWPGADVLVFNSGHWWL 115

Query: 342 KQSVYILNNEIVGGQLWWPDKSRPMKVNNVDAFGISVETIMTAI-ATHPNYTGLTIVRSY 400
            + VYI      G        S   ++  +DA+  ++ET    +    P        R++
Sbjct: 116 HRKVYI------GWDYCQK--SNYKEMGFLDAYRKALETWAKWVDVNLPPSKTRVFFRTF 167

Query: 401 SPDHYEGGTWNTGGSCTGKEKPLAVGELVKNGFTEVMHEKQVAGFNNAIKKATNKSKLRL 460
           SP H+EGG WNTGGSC  + +PL        G T  M +      N  + +A  K+ ++L
Sbjct: 168 SPVHFEGGEWNTGGSCY-ETEPL--LGSEYKGLTPEMIDIV----NEVLSRAAMKTPVKL 220

Query: 461 MDITEAFGYRHDGHPGPYRNPDPNKITKRGPDGRPPPQDCLHWCMPGPVDTWNELVLEII 520
           +DIT    YR DGHP  YR P P K            QDCLHWC+PG  DTWNEL+L ++
Sbjct: 221 LDITLLSQYRKDGHPSVYRKPGPPKKE----------QDCLHWCLPGVPDTWNELLLALL 270


The PC-Esterase family is comprised of Cas1p, the Homo sapiens C7orf58, Arabidopsis thaliana PMR5 and a group of plant freezing resistance/coldacclimatization proteins typified by Arabidopsis thaliana ESKIMO1, animal FAM55D proteins, and animal FAM113 proteins. The PC-Esterase family has features that are both similar and different from the canonical GDSL/SGNH superfamily. The members of this family are predicted to have Acyl esterase activity and predicted to modify cell-surface biopolymers such as glycans and glycoproteins. The Cas1p protein has a Cas1_AcylT domain, in addition, with the opposing acyltransferase activity. The C7orf58 family has a ATP-Grasp domain fused to the PC-Esterase and is the first identified secreted tubulin-tyrosine ligase like enzyme in eukaryotes. The plant family with PMR5, ESK1, TBL3 etc have a N-terminal C rich potential sugar binding domain followed by the PC-Esterase domain. Length = 270

>gnl|CDD|215338 PLN02629, PLN02629, powdery mildew resistance 5 Back     alignment and domain information
>gnl|CDD|206583 pfam14416, PMR5N, PMR5 N terminal Domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 532
PLN02629387 powdery mildew resistance 5 100.0
PF13839263 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family f 100.0
PF1441655 PMR5N: PMR5 N terminal Domain 99.94
cd01842183 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SG 96.91
>PLN02629 powdery mildew resistance 5 Back     alignment and domain information
Probab=100.00  E-value=1.2e-109  Score=868.62  Aligned_cols=326  Identities=31%  Similarity=0.590  Sum_probs=271.3

Q ss_pred             CCCCCcCccccEeeCCCCCCCCCCCCC-CcccccccccCCCCCCCCceeeecCCCCCCCCCCHHHHHHHHcCCcEEEEec
Q 009529          169 VASGCDLYHGSWFYDSSGPVYTNNTCP-VITQMQNCQGNGRPDKEYENWRWRPAECDLPRFDGKKFLELMRGKTLAFIGD  247 (532)
Q Consensus       169 ~~~~CDl~~G~WV~D~~~PlY~~~~Cp-~i~~~~nC~~nGRPD~~Yl~WRWQP~~C~LprFD~~~fLe~LRgKrl~FVGD  247 (532)
                      ..+.||+|+|+||+|+++|||++++|| ||+++|||++|||||++|++|||||++|+||||||.+||++|||||||||||
T Consensus        49 ~~~~CD~f~G~WV~D~s~PlY~~~~Cp~fi~~~~nC~knGRPD~~Yl~WRWqP~gC~LPRFda~~fLe~~RgKrl~FVGD  128 (387)
T PLN02629         49 NQSTCALFVGTWVRDDSYPLYQSSDCPGVIDPEFNCQMYGRPDSDYLKYRWQPLNCELPRFNGLEFLLKMKGKTVMFVGD  128 (387)
T ss_pred             CccccCCCCCeEecCCCCCCCCCCCCccccccccchhhcCCCCcchhhccccCCCCCCCCcCHHHHHHHhcCCeEEEecc
Confidence            467899999999999999999999999 9999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHhhhhcccccCCc----CccceeeEEEeecCEEEEEEEeccceeccCCCCCCCCCCceeEeecCCCchhh
Q 009529          248 SVARNQMESMLCLLWQVEVPKNR----GNRRMQRWYFKSTSVTIVRIWSSWLVKKINEPFDFAPAGVDKLHLDAPDENFM  323 (532)
Q Consensus       248 SL~Rnq~eSLlCLL~~~~~P~~~----~~~~~~r~~f~s~nvTV~f~WSPFLV~~~~~~~~~a~~g~~~L~LD~~d~~~a  323 (532)
                      ||+|||||||+|||+++ +|...    ....+.+|+|++||+||+|||+||||+.+.+.      +...|+||+++. ++
T Consensus       129 SL~RNQ~eSLvClL~~~-~p~~~~~~~~~~~~~~~~F~~yN~TV~~ywspfLV~~~~~~------~~~~l~LD~id~-~a  200 (387)
T PLN02629        129 SLGRNQWESLICLISSS-VPSTRTQMSRGDPLSTFKFLDYGVSISFYKAPYLVDIDAVQ------GKRVLKLEEISG-NA  200 (387)
T ss_pred             ccchhHHHHHHHHhhcc-CCCCceeeecCCceEEEEeccCCEEEEEEecceEEeeecCC------CceeEEecCcch-hh
Confidence            99999999999999886 44321    12346789999999999999999999976432      346799999875 58


Q ss_pred             hcCCCCcEEEEecCcccccceeEEecceEecceecCCCCCC-CCccchhhHHHHHHHHHHHHHHhCCCC-cceEEEEEec
Q 009529          324 EFVPSFDVIVLSSGHWFAKQSVYILNNEIVGGQLWWPDKSR-PMKVNNVDAFGISVETIMTAIATHPNY-TGLTIVRSYS  401 (532)
Q Consensus       324 ~~~~~~DVLVfNTGhWw~r~~~~~~~g~~vg~~~~~~~~~~-~~~~~~~~Ay~~al~T~~~wi~~~~~~-~~~vFfRT~S  401 (532)
                      +.|+++|||||||||||.+++.+.      |++.+ ..+.. ..+|+..+||++||+||++||+.+.+. +++|||||+|
T Consensus       201 ~~w~~~DvlVfntghWw~~~~~~~------~~~~~-~~g~~~~~~~~~~~A~r~al~T~~~wv~~~~~~~kt~vffrT~S  273 (387)
T PLN02629        201 NAWRDADVLIFNTGHWWSHQGSLQ------GWDYI-ESGGTYYQDMDRLVALEKALRTWAYWVDTNVDRSRTRVFFQSIS  273 (387)
T ss_pred             hhhccCCEEEEeCccccCCCCeeE------Eeeee-ccCCccccCccHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEecC
Confidence            999999999999999999986543      33322 22212 236788899999999999999887654 7789999999


Q ss_pred             CCCCCCCCCCCCC-----CCCCcceeCccCccccCCchhhhHHHHHHHHHHHHHHhcCCCceEEeecccccccCCCCCCC
Q 009529          402 PDHYEGGTWNTGG-----SCTGKEKPLAVGELVKNGFTEVMHEKQVAGFNNAIKKATNKSKLRLMDITEAFGYRHDGHPG  476 (532)
Q Consensus       402 P~Hfegg~Wn~GG-----~C~~~T~Pl~~ge~~~~~~~~~m~~~qv~e~~~al~~a~~~~~V~LLDIT~LS~lR~DGHPS  476 (532)
                      |+||+||+||+||     +|+++|+|+..+++ ..++..+|.  +++++.     +.++.+|+|||||+||+||||||||
T Consensus       274 P~Hfe~g~Wn~gg~~~~~~C~~et~P~~~~~~-~~~~~~~~~--~ve~v~-----~~~~~~v~lLDIT~ls~lR~DgHPs  345 (387)
T PLN02629        274 PTHYNPSEWSAGASTTTKNCYGETTPMSGMTY-PGAYPDQMR--VVDEVI-----RGMHNPAYLLDITLLSELRKDGHPS  345 (387)
T ss_pred             cccccCCCcCCCCCCCCCCCccCCccCcCccc-cCcchHHHH--HHHHHH-----HhcCCceEEEechhhhhcCCCCCcc
Confidence            9999999999874     69999999985544 344444443  344432     2356899999999999999999999


Q ss_pred             CCCCCCCCcccCCCCCCCCCCCCcccccCCCchhHHHHHHHHHHH
Q 009529          477 PYRNPDPNKITKRGPDGRPPPQDCLHWCMPGPVDTWNELVLEIIR  521 (532)
Q Consensus       477 ~Y~~~~~~~~t~~g~~~~~~~~DClHWCLPGvpDtWNeLLya~L~  521 (532)
                      +|++..    +.++...+..++||+||||||||||||||||++|+
T Consensus       346 ~Y~~~~----~~~~~~~p~~~~DC~HWCLPGvpDTWNelL~a~L~  386 (387)
T PLN02629        346 IYSGDL----SPSQRANPDRSADCSHWCLPGLPDTWNQLFYTALF  386 (387)
T ss_pred             cccCCC----chhhccCCCCCCCcccccCCCCCccHHHHHHHHHh
Confidence            997542    22233333457999999999999999999999986



>PF13839 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p Back     alignment and domain information
>PF14416 PMR5N: PMR5 N terminal Domain Back     alignment and domain information
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query532
d3dc7a1207 Uncharacterized protein Lp3323 {Lactobacillus plan 81.92
d3bzwa1248 Uncharacterized protein BT2961 {Bacteroides thetai 80.91
>d3dc7a1 c.23.10.9 (A:18-224) Uncharacterized protein Lp3323 {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: SGNH hydrolase
family: BT2961-like
domain: Uncharacterized protein Lp3323
species: Lactobacillus plantarum [TaxId: 1590]
Probab=81.92  E-value=0.2  Score=42.74  Aligned_cols=15  Identities=33%  Similarity=0.496  Sum_probs=12.8

Q ss_pred             HcCCcEEEEechhhH
Q 009529          237 MRGKTLAFIGDSVAR  251 (532)
Q Consensus       237 LRgKrl~FVGDSL~R  251 (532)
                      +..|||+|+|||++-
T Consensus         2 ~~~kri~~iGDSit~   16 (207)
T d3dc7a1           2 VSFKRPAWLGDSITA   16 (207)
T ss_dssp             BCCSSEEEEESTTTS
T ss_pred             CCCCEEEEEehHhhc
Confidence            357999999999984



>d3bzwa1 c.23.10.9 (A:38-285) Uncharacterized protein BT2961 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure