Citrus Sinensis ID: 009539
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 532 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SKR2 | 541 | Synaptotagmin-1 OS=Arabid | yes | no | 1.0 | 0.983 | 0.764 | 0.0 | |
| B6ETT4 | 537 | Synaptotagmin-2 OS=Arabid | no | no | 0.996 | 0.986 | 0.717 | 0.0 | |
| Q7XA06 | 540 | Synaptotagmin-3 OS=Arabid | no | no | 0.998 | 0.983 | 0.534 | 1e-163 | |
| Q8L706 | 560 | Synaptotagmin-5 OS=Arabid | no | no | 0.953 | 0.905 | 0.297 | 2e-63 | |
| A0JJX5 | 569 | Synaptotagmin-4 OS=Arabid | no | no | 0.969 | 0.906 | 0.293 | 9e-57 | |
| Q3TZZ7 | 845 | Extended synaptotagmin-2 | yes | no | 0.840 | 0.528 | 0.244 | 5e-30 | |
| A0FGR8 | 921 | Extended synaptotagmin-2 | yes | no | 0.840 | 0.485 | 0.238 | 3e-29 | |
| Q3U7R1 | 1092 | Extended synaptotagmin-1 | no | no | 0.909 | 0.443 | 0.248 | 4e-29 | |
| Q5RAG2 | 1104 | Extended synaptotagmin-1 | yes | no | 0.924 | 0.445 | 0.245 | 5e-29 | |
| Q9Z1X1 | 1088 | Extended synaptotagmin-1 | no | no | 0.909 | 0.444 | 0.246 | 3e-28 |
| >sp|Q9SKR2|SYT1_ARATH Synaptotagmin-1 OS=Arabidopsis thaliana GN=SYT1 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 869 bits (2246), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/540 (76%), Positives = 475/540 (87%), Gaps = 8/540 (1%)
Query: 1 MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIP 60
MG STI GFCGFGVGIS GLVIGY LF+Y P DVK+PEIR + ++D + + +MLPEIP
Sbjct: 1 MGFFSTILGFCGFGVGISLGLVIGYVLFVYLLPNDVKDPEIRSIADQDPKAMLRMLPEIP 60
Query: 61 LWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTL 120
LWVK PD+DRVDW+N+FLE MWPYLDKAICKTAKNIAKPII EQIPKYKI+SVEFETLTL
Sbjct: 61 LWVKNPDFDRVDWINRFLEYMWPYLDKAICKTAKNIAKPIIEEQIPKYKIDSVEFETLTL 120
Query: 121 GTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRI 180
G+LPPTFQGMKVY+TDEKELIMEPCLKWAANPN+ + +KAFGLKATVQVVDLQVFAQPRI
Sbjct: 121 GSLPPTFQGMKVYLTDEKELIMEPCLKWAANPNILVAIKAFGLKATVQVVDLQVFAQPRI 180
Query: 181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFV------QVANMYLW 234
TLKPLVP+FPCFANIYVSLMEKPHVDFGLKL GADLMSIPGLYRFV QVANMYLW
Sbjct: 181 TLKPLVPSFPCFANIYVSLMEKPHVDFGLKLGGADLMSIPGLYRFVQEQIKDQVANMYLW 240
Query: 235 PKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTT 294
PKTL VPILDP+KA+RRPVGI+HVKVV+A+ L+KKDL+G +DP+VK+K++EDK+PSKKTT
Sbjct: 241 PKTLVVPILDPAKAFRRPVGIVHVKVVRAVGLRKKDLMGGADPFVKIKLSEDKIPSKKTT 300
Query: 295 VKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK 354
VKHKNLNPEWNEE+ F+VRDP++Q +E +VYDWEQVG +KMGMNV+ LKE+ P+E
Sbjct: 301 VKHKNLNPEWNEEFKFSVRDPQTQVLEFSVYDWEQVGNPEKMGMNVLALKEMVPDEHKAF 360
Query: 355 TLDLLKNMDLN-DGQ-NEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGG 412
TL+L K +D DGQ +K RG+L VE +YKPF EE++PK FEE+Q VQKAPE TPA GG
Sbjct: 361 TLELRKTLDGGEDGQPPDKYRGKLEVELLYKPFTEEEMPKGFEETQAVQKAPEGTPAAGG 420
Query: 413 LLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDR 472
+LVVIVH A+DVEGKHHTNPY RI F+GEERKTKHVKKNRDPRW EEF FMLEEPP ++
Sbjct: 421 MLVVIVHSAEDVEGKHHTNPYVRIYFKGEERKTKHVKKNRDPRWNEEFTFMLEEPPVREK 480
Query: 473 LHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQWRTA 532
LHVEV S SSRIGLLHPKETLGY+DI + DVV+NKR+N+K+HLIDSKNG+IQIEL+WRTA
Sbjct: 481 LHVEVLSTSSRIGLLHPKETLGYVDIPVVDVVNNKRMNQKFHLIDSKNGKIQIELEWRTA 540
|
Plays an important role in maintaining plasma membrane integrity during freezing and osmotic stresses. May function in membrane resealing during calcium-dependent freezing tolerance. May regulate endocytosis and endosome recycling at the plasma membrane and cell-to-cell trafficking of cabbage leaf curl virus (CaLCuV) and tobacco mosaic virus (TMV) movement proteins via plasmodesmata. Arabidopsis thaliana (taxid: 3702) |
| >sp|B6ETT4|SYT2_ARATH Synaptotagmin-2 OS=Arabidopsis thaliana GN=SYT2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 819 bits (2115), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/538 (71%), Positives = 463/538 (86%), Gaps = 8/538 (1%)
Query: 1 MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIP 60
MG+ISTI G GFG G + G+VIGY+LFIYFQ TDV++PEI+PLVE DSET+ M PEIP
Sbjct: 1 MGIISTILGVIGFGFGTTIGIVIGYYLFIYFQSTDVEDPEIKPLVELDSETIATMFPEIP 60
Query: 61 LWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTL 120
+WVK PD+DR+DWLNK + MWPY+DKAICK AK+IAKPIIAEQIP YKI+SVEFE LTL
Sbjct: 61 MWVKNPDFDRIDWLNKLIGHMWPYMDKAICKMAKSIAKPIIAEQIPNYKIDSVEFEMLTL 120
Query: 121 GTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRI 180
G+LPP+FQGMKVY TD+KE+IME +KWA NPN+ + KAFGLKATVQV+DLQV+A PRI
Sbjct: 121 GSLPPSFQGMKVYATDDKEIIMELSVKWAGNPNIIVVAKAFGLKATVQVIDLQVYATPRI 180
Query: 181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQ------VANMYLW 234
TLKPLVP+FPCFANI+VSLM+KP VDFGLKL+GAD+M+IPGLYRFVQ VANMYLW
Sbjct: 181 TLKPLVPSFPCFANIFVSLMDKPQVDFGLKLLGADVMAIPGLYRFVQEIIKDQVANMYLW 240
Query: 235 PKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTT 294
PKTL V I+DPSKA ++PVG+L VKV+KA+ LKKKDLLG SDPYVKL ++ DK+P KKT
Sbjct: 241 PKTLNVQIMDPSKAMKKPVGLLSVKVIKAIKLKKKDLLGGSDPYVKLTLSGDKVPGKKTV 300
Query: 295 VKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK 354
VKH NLNPEWNEE++ V++PESQ ++L VYDWEQVGKHDK+GMNV+ LK+LTPEEP +
Sbjct: 301 VKHSNLNPEWNEEFDLVVKEPESQELQLIVYDWEQVGKHDKIGMNVIQLKDLTPEEPKLM 360
Query: 355 TLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLL 414
TL+LLK+M+ + +EKSRGQLVVE YKPFK++D+P++ ++ V+KAPE TP+ GGLL
Sbjct: 361 TLELLKSMEPKEPVSEKSRGQLVVEVEYKPFKDDDIPENIDDPNAVEKAPEGTPSTGGLL 420
Query: 415 VVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLH 474
VVIVHEA+D+EGK+HTNP R+LFRGEERKTK VKKNR+PRW+E+FQF L+EPP ND+LH
Sbjct: 421 VVIVHEAEDLEGKYHTNPSVRLLFRGEERKTKRVKKNREPRWDEDFQFPLDEPPINDKLH 480
Query: 475 VEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQWRTA 532
VEV S SSR L+HPKETLGY+ INL DVVSN+RIN+KYHLIDSKNGRIQIELQWR +
Sbjct: 481 VEVISSSSR--LIHPKETLGYVVINLGDVVSNRRINDKYHLIDSKNGRIQIELQWRNS 536
|
May play an important role in regulating an unconventional protein trafficking from the cytosol to the extracelluar matrix. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7XA06|SYT3_ARATH Synaptotagmin-3 OS=Arabidopsis thaliana GN=SYT3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 577 bits (1486), Expect = e-163, Method: Compositional matrix adjust.
Identities = 289/541 (53%), Positives = 388/541 (71%), Gaps = 10/541 (1%)
Query: 1 MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIP 60
MG +++ G GF +GI GL++G+F+ IY QP+ + P RPLVE L +LP+IP
Sbjct: 1 MGFFTSVLGIIGFVIGIPIGLILGFFVLIYSQPSHQEYPPARPLVETSISVLLDLLPDIP 60
Query: 61 LWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTL 120
LW+K PDY+RVDW NKF+ MWPYLDKA+C ++ +P+ A+ I + IES+EFE L+L
Sbjct: 61 LWMKNPDYERVDWFNKFISYMWPYLDKAVCGIIRSSVQPLFADYIGTFCIESIEFENLSL 120
Query: 121 GTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRI 180
GTLPPT G+K Y T+EKEL+ EP +KWA NPN+ + +K L+ VQ+VDLQ FA R+
Sbjct: 121 GTLPPTVHGVKFYETNEKELLFEPSIKWAGNPNIVLVLKVLSLRIRVQLVDLQFFAIVRV 180
Query: 181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFV------QVANMYLW 234
LKPL+P FPCF + VSLMEKPHVDFGLK++G DLMSIPGLYR+V QV++MY W
Sbjct: 181 ALKPLLPTFPCFGMVVVSLMEKPHVDFGLKVLGGDLMSIPGLYRYVQETIKRQVSSMYHW 240
Query: 235 PKTLEVPILDPSKA-YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKT 293
P+ LE+PILD S A ++PVG+LHV +++A NL KKDLLG SDPYVKL +T +KLP+KKT
Sbjct: 241 PQVLEIPILDSSTASVKKPVGLLHVSILRARNLLKKDLLGTSDPYVKLSLTGEKLPAKKT 300
Query: 294 TVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSV 353
T+K +NLNPEWNE + V+DP SQ ++L V+DW++VG HD++GM ++PL+++ P E
Sbjct: 301 TIKKRNLNPEWNEHFKLIVKDPNSQVLQLEVFDWDKVGGHDRLGMQMIPLQKINPGERKE 360
Query: 354 KTLDLLKNMD-LNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGG 412
LDL+KN + + D ++K RG+L V+ Y PF+EE + + E + ++ + G
Sbjct: 361 FNLDLIKNSNVVMDSGDKKKRGRLEVDLRYVPFREESIKRRKESREEKSSEDDDFLSQAG 420
Query: 413 LLVVIVHEAQDVEG-KHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTND 471
LL V V A+DVEG K H+NPYA +LFRGE++KTK +KK RDPRW EEFQF LEEPP +
Sbjct: 421 LLSVAVQSAKDVEGKKKHSNPYAVVLFRGEKKKTKMLKKTRDPRWNEEFQFTLEEPPVKE 480
Query: 472 RLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQWRT 531
+ VEV S + KE LG++DINL DVV N RIN+KYHLI+S+NG I IE++W T
Sbjct: 481 SIRVEVMSKGTGFH-FRSKEELGHVDINLDDVVDNGRINQKYHLINSRNGIIHIEIRWTT 539
Query: 532 A 532
+
Sbjct: 540 S 540
|
May be involved in membrane trafficking. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8L706|SYT5_ARATH Synaptotagmin-5 OS=Arabidopsis thaliana GN=SYT5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 244 bits (622), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 167/561 (29%), Positives = 279/561 (49%), Gaps = 54/561 (9%)
Query: 12 GFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPE----------IPL 61
GF VG+ GL++G + I F + ++R + +M E P
Sbjct: 2 GFIVGVVIGLLVGIAIIIGFVKLENSRSKLRSELANTVAAFARMTVEDSRKLLPPEFYPS 61
Query: 62 WVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTLG 121
WV + ++ WLN L +WPY+D+A + K +P++ + P + S+ F LTLG
Sbjct: 62 WVVFSERQKLTWLNHHLTKIWPYVDEAASELIKASVEPVLEQYRPAI-VASLTFSKLTLG 120
Query: 122 TLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAF-GLKATVQVVDLQVFAQPRI 180
T+ P F G+ V D+ + +E ++W NPN+ +GVK G+ +QV ++ R+
Sbjct: 121 TVAPQFTGVSVIDGDKNGITLELDMQWDGNPNIVLGVKTLVGVSLPIQVKNIGFTGVFRL 180
Query: 181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQ------VANMYLW 234
+PLV FPCF + VSL EK +DF LK+VG D+ +IPGL ++ V + W
Sbjct: 181 IFRPLVEDFPCFGAVSVSLREKKKLDFTLKVVGGDISAIPGLSEAIEETIRDAVEDSITW 240
Query: 235 PKTLEVPIL--DPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKK 292
P +PI+ D S +PVG+L VK+V+A NL KDL+G SDP+ K+ I + +K+
Sbjct: 241 PVRKVIPIIPGDYSDLELKPVGMLEVKLVQAKNLTNKDLVGKSDPFAKMFIRPLREKTKR 300
Query: 293 TTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPS 352
+ + +LNP WNE + F V D +Q + + +YD E V + +G + L EL P +
Sbjct: 301 SKTINNDLNPIWNEHFEFVVEDASTQHLVVRIYDDEGVQASELIGCAQIRLCELEPGKVK 360
Query: 353 VKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFK-----------------EEDLPKSFE 395
L L+K++++ ++ K+RG++ +E +Y P+ E L
Sbjct: 361 DVWLKLVKDLEIQ--RDTKNRGEVHLELLYIPYGSGNGIVNPFVTSSMTSLERVLKNDTT 418
Query: 396 ESQTVQKAPENTPAGGGLLVVIVHEA-----QDVEGKHHTNPYARILFR--GEERKTKHV 448
+ + G+L V V A QD+ GK +PY + + G + KT+ V
Sbjct: 419 DEENASSRKRKDVIVRGVLSVTVISAEEIPIQDLMGK--ADPYVVLSMKKSGAKSKTRVV 476
Query: 449 KKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKR 508
+ +P W + F F++E+ +D L +EV + K+ +G + L+ V+ +
Sbjct: 477 NDSLNPVWNQTFDFVVED-GLHDMLVLEVWDHDT-----FGKDYIGRCILTLTRVIMEEE 530
Query: 509 INEKYHLIDSKNGRIQIELQW 529
+ Y L +SK G++Q+ L+W
Sbjct: 531 YKDWYPLDESKTGKLQLHLKW 551
|
May be involved in membrane trafficking. Arabidopsis thaliana (taxid: 3702) |
| >sp|A0JJX5|SYT4_ARATH Synaptotagmin-4 OS=Arabidopsis thaliana GN=SYT4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 221 bits (564), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 168/572 (29%), Positives = 284/572 (49%), Gaps = 56/572 (9%)
Query: 1 MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKN--PEIRPLVERDSETLQQMLPE 58
MG + +F G+ +S GLV+ + + + T + I + +++LP
Sbjct: 1 MGFLFGLF----IGIAVSFGLVVAFARYSSVRSTRRADLAKTIAAFARMTVQDSRKLLPG 56
Query: 59 --IPLWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFE 116
P WV +++WLN LE +WPY+++A + K+ +P++ + P + S++F
Sbjct: 57 DFYPSWVVFSQRQKLNWLNLELEKIWPYVNEAASELIKSSVEPVLEQYTPAM-LASLKFS 115
Query: 117 TLTLGTLPPTFQGMKVYVTDE--KELIMEPCLKWAANPNVTIGVKAF-GLKATVQVVDLQ 173
TLGT+ P F G+ + ++ + ME ++W NP + + VK G+ ++V ++
Sbjct: 116 KFTLGTVAPQFTGVSILESESGPNGITMELEMQWDGNPKIVLDVKTLLGVSLPIEVKNIG 175
Query: 174 VFAQPRITLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQ------ 227
R+ KPLV FPCF + SL EK +DF LK++G +L SIPG+ ++
Sbjct: 176 FTGVFRLIFKPLVDEFPCFGALSYSLREKKGLDFTLKVIGGELTSIPGISDAIEETIRDA 235
Query: 228 VANMYLWPKTLEVPIL--DPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITE 285
+ + WP +PIL D S +PVG L VKVV+A +L KD++G SDPY + I
Sbjct: 236 IEDSITWPVRKIIPILPGDYSDLELKPVGKLDVKVVQAKDLANKDMIGKSDPYAIVFIRP 295
Query: 286 DKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKE 345
+KKT +LNP WNE + F V D +Q + + V+D E VG +G VPL E
Sbjct: 296 LPDRTKKTKTISNSLNPIWNEHFEFIVEDVSTQHLTVRVFDDEGVGSSQLIGAAQVPLNE 355
Query: 346 LTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF-KEEDLPKSF--EESQTVQK 402
L P + L L+K++++ ++ K+RGQ+ +E +Y P KE L F + S T+ +
Sbjct: 356 LVPGKVKDIWLKLVKDLEIQ--RDTKNRGQVQLELLYCPLGKEGGLKNPFNPDYSLTILE 413
Query: 403 ---APENTPAGG-----------------GLLVVIVHEAQD---VEGKHHTNPYARILFR 439
PE+ + G+L V V A+D V+ + + I +
Sbjct: 414 KVLKPESEDSDATDMKKLVTSKKKDVIVRGVLSVTVVAAEDLPAVDFMGKADAFVVITLK 473
Query: 440 GEE--RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYID 497
E KT+ V + +P W + F F++E+ +D L +EV + G K+ +G +
Sbjct: 474 KSETKSKTRVVPDSLNPVWNQTFDFVVED-ALHDLLTLEVWD-HDKFG----KDKIGRVI 527
Query: 498 INLSDVVSNKRINEKYHLIDSKNGRIQIELQW 529
+ L+ V+ E + L +K+G++ + L+W
Sbjct: 528 MTLTRVMLEGEFQEWFELDGAKSGKLCVHLKW 559
|
May be involved in membrane trafficking. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3TZZ7|ESYT2_MOUSE Extended synaptotagmin-2 OS=Mus musculus GN=Esyt2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 132 bits (333), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 122/498 (24%), Positives = 237/498 (47%), Gaps = 51/498 (10%)
Query: 58 EIPLWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFET 117
++P WV PD +R +WLNK ++ MWP++ + I K + +P A + + + F
Sbjct: 106 DLPAWVHFPDTERAEWLNKTVKHMWPFICQFIEKLFRETIEP--AVRGANAHLSTFSFTK 163
Query: 118 LTLGTLPPTFQGMKVYV--TDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVF 175
+ +G P G+KVY D++++I++ + + N + + +K + +A V+ + Q+
Sbjct: 164 VDVGQQPLRVNGVKVYTENVDKRQIILDLQISFVGNCEIDLEIKRYFCRAGVKSI--QIH 221
Query: 176 AQPRITLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQ------VA 229
R+ L+PL+ P + + + KP ++ + +L+ IPGL ++
Sbjct: 222 GTMRVILEPLIGDMPLVGALSIFFLRKPLLEINWTGL-TNLLDIPGLNGLSDTIILDIIS 280
Query: 230 NMYLWPKTLEVPILDPSKAYRR----PVGILHVKVVKAMNLKKKD------LLGASDPYV 279
N + P + VP++ + + P G+L + ++A +L+ KD + G SDPY
Sbjct: 281 NYLVLPNRITVPLVSEVQIAQLRFPIPKGVLRIHFIEAQDLQGKDTYLKGLVKGKSDPYG 340
Query: 280 KLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMN 339
+++ SK V +NL+P+WNE Y V + Q +E+ ++D E K D +G
Sbjct: 341 IIRVGNQIFQSK---VIKENLSPKWNEVYEALVYEHPGQELEIELFD-EDPDKDDFLGSL 396
Query: 340 VVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQT 399
++ L E+ E + LD +D + K + L +E++ +L K + +
Sbjct: 397 MIDLIEVEKE----RLLDEWFTLD----EVPKGKLHLKLEWLTLMPDAANLDKVLADIRA 448
Query: 400 VQKAPENTPAGGGLLVVIVHEAQDV-EGK---HHTNPYARILFRGEERKTKHVKKNRDPR 455
K + LL++ + A+++ GK + NP ++ + +++K K +P
Sbjct: 449 -DKDQASDGLSSALLILYLDSARNLPSGKKINSNPNPLVQMSVGHKAQESKIRYKTSEPV 507
Query: 456 WEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVS--NKRINEKY 513
WEE F F + P D L VEV + +LG + I LS +++ N IN+++
Sbjct: 508 WEENFTFFIHNPRRQD-LEVEVKDEQHQC-------SLGSLRIPLSQLLTSDNMTINQRF 559
Query: 514 HLIDSK-NGRIQIELQWR 530
L +S N +++++ R
Sbjct: 560 QLSNSGPNSTLKMKIALR 577
|
May play a role as calcium-regulated intrinsic membrane protein. Mus musculus (taxid: 10090) |
| >sp|A0FGR8|ESYT2_HUMAN Extended synaptotagmin-2 OS=Homo sapiens GN=ESYT2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 130 bits (326), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 119/498 (23%), Positives = 239/498 (47%), Gaps = 51/498 (10%)
Query: 58 EIPLWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFET 117
++P WV PD +R +WLNK ++ MWP++ + I K + +P + + + + F
Sbjct: 182 DLPAWVHFPDTERAEWLNKTVKHMWPFICQFIEKLFRETIEPAV--RGANTHLSTFSFTK 239
Query: 118 LTLGTLPPTFQGMKVYV--TDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVF 175
+ +G P G+KVY D++++I++ + + N + + +K + +A V+ + Q+
Sbjct: 240 VDVGQQPLRINGVKVYTENVDKRQIILDLQISFVGNCEIDLEIKRYFCRAGVKSI--QIH 297
Query: 176 AQPRITLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQ------VA 229
R+ L+PL+ P + + + KP ++ + +L+ +PGL ++
Sbjct: 298 GTMRVILEPLIGDMPLVGALSIFFLRKPLLEINWTGL-TNLLDVPGLNGLSDTIILDIIS 356
Query: 230 NMYLWPKTLEVPILDPSK--AYRRPV--GILHVKVVKAMNLKKKD------LLGASDPYV 279
N + P + VP++ + R PV G+L + ++A +L+ KD + G SDPY
Sbjct: 357 NYLVLPNRITVPLVSEVQIAQLRFPVPKGVLRIHFIEAQDLQGKDTYLKGLVKGKSDPYG 416
Query: 280 KLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMN 339
+++ S+ V +NL+P+WNE Y V + Q +E+ ++D E K D +G
Sbjct: 417 IIRVGNQIFQSR---VIKENLSPKWNEVYEALVYEHPGQELEIELFD-EDPDKDDFLGSL 472
Query: 340 VVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQT 399
++ L E+ E + LD +D + K + L +E++ +L K + +
Sbjct: 473 MIDLIEVEKE----RLLDEWFTLD----EVPKGKLHLRLEWLTLMPNASNLDKVLTDIK- 523
Query: 400 VQKAPENTPAGGGLLVVIVHEAQDV-EGK---HHTNPYARILFRGEERKTKHVKKNRDPR 455
K N LL++ + A+++ GK + NP ++ + +++K K +P
Sbjct: 524 ADKDQANDGLSSALLILYLDSARNLPSGKKISSNPNPVVQMSVGHKAQESKIRYKTNEPV 583
Query: 456 WEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNK--RINEKY 513
WEE F F + P D L VEV + +LG + + LS +++++ +++++
Sbjct: 584 WEENFTFFIHNPKRQD-LEVEVRDEQHQC-------SLGNLKVPLSQLLTSEDMTVSQRF 635
Query: 514 HLIDSK-NGRIQIELQWR 530
L +S N I++++ R
Sbjct: 636 QLSNSGPNSTIKMKIALR 653
|
May play a role as calcium-regulated intrinsic membrane protein. Homo sapiens (taxid: 9606) |
| >sp|Q3U7R1|ESYT1_MOUSE Extended synaptotagmin-1 OS=Mus musculus GN=Esyt1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 129 bits (325), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 137/551 (24%), Positives = 246/551 (44%), Gaps = 67/551 (12%)
Query: 18 SSGLVIGYFLF---IYFQPTDVKNPEIRPLV---------ER-DSETLQQMLPEIPLWVK 64
++GL +G+ LF +Y V++ + R L ER +ETL E+P WV
Sbjct: 63 AAGLSVGFVLFGLALYLGWRRVRDGKERSLRAARQLLDDEERITAETLYMSHRELPAWVS 122
Query: 65 CPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTLGTLP 124
PD ++ +WLNK + +WP+L + + K P + P +++ F + LG P
Sbjct: 123 FPDVEKAEWLNKIVAQVWPFLGQYMEKLLAETVAPAVRGANP--HLQTFTFTRVELGEKP 180
Query: 125 PTFQGMKVYVTDEK-ELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRITLK 183
G+KV+ + K +++++ + + + + + VK + KA V+ +Q+ R+ L+
Sbjct: 181 LRIIGVKVHPSQRKDQILLDLNVSYVGDVQIDVEVKKYFCKAGVK--GMQLHGVLRVILE 238
Query: 184 PLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFV------QVANMYLWPKT 237
PL P + + +++P +D + +L+ IPGL +A + P
Sbjct: 239 PLTGDLPIVGAVSMFFIKRPTLDINWTGM-TNLLDIPGLSSLSDTMIMDSIAAFLVLPNR 297
Query: 238 LEVPI---LDPSKAYRRPV--GILHVKVVKAMNLKKKD------LLGASDPYVKLKITED 286
L VP+ L R P+ GI+ + ++ A L KD + G SDPY +++
Sbjct: 298 LLVPLVPDLQDVAQLRSPLPRGIIRIHLLAARGLSSKDKYVKGLIEGKSDPYALVRVGTQ 357
Query: 287 KLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKEL 346
S+ V + LNP W E Y V + Q +E+ V+ DK L +
Sbjct: 358 TFCSR---VIDEELNPHWGETYEVIVHEVPGQEIEVEVF--------DKDPDKDDFLGRM 406
Query: 347 TPEEPSVKTLDLLKN-MDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPE 405
+ V +L N L GQ + L +E++ E L + + ++ + PE
Sbjct: 407 KLDVGKVLQAGVLDNWYPLQGGQGQV---HLRLEWLSLLPDAEKLDQVLQWNRGITSRPE 463
Query: 406 NTPAGGGLLVVIVHEAQDV---EGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQF 462
P +LVV + AQD+ +G NP ++ + R++K P WEE F+F
Sbjct: 464 --PPSAAILVVYLDRAQDLPLKKGNKEPNPMVQLSVQDVTRESKATYSTNSPVWEEAFRF 521
Query: 463 MLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVV--SNKRINEKYHLIDSK- 519
L++P + + L V+V S + TLG + + L+ ++ S +++ + L S
Sbjct: 522 FLQDPRSQE-LDVQVKDDSRAL-------TLGALTLPLARLLTASELTLDQWFQLSSSGP 573
Query: 520 NGRIQIELQWR 530
N R+ ++L R
Sbjct: 574 NSRLYMKLVMR 584
|
May play a role as calcium-regulated intrinsic membrane protein. Mus musculus (taxid: 10090) |
| >sp|Q5RAG2|ESYT1_PONAB Extended synaptotagmin-1 OS=Pongo abelii GN=ESYT1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 129 bits (325), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 136/555 (24%), Positives = 246/555 (44%), Gaps = 63/555 (11%)
Query: 10 FCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLV----------ERDSETLQQMLPEI 59
+ VG+S G V+ + L +Y V++ + R L + ++TL E+
Sbjct: 69 YLAGAVGLSVGFVL-FGLALYLGWRRVRDEKERSLRAARQLLDDEEQLTAKTLYMSHREL 127
Query: 60 PLWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLT 119
P WV PD ++ +WLNK + +WP+L + + K P + P +++ F +
Sbjct: 128 PAWVSFPDVEKAEWLNKIVAQVWPFLGQYMEKLLAETVAPAVRGSNP--HLQTFTFTRVE 185
Query: 120 LGTLPPTFQGMKVYVTDEKE-LIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQP 178
LG P G+KV+ KE ++++ + + + + + VK + KA V+ +Q+
Sbjct: 186 LGEKPLRIIGVKVHPGQRKEQILLDLNISYVGDVQIDVEVKKYFCKAGVK--GMQLHGVL 243
Query: 179 RITLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFV------QVANMY 232
R+ L+PL+ P + + + +P +D + +L+ IPGL +A
Sbjct: 244 RVILEPLIGDLPIVGAVSMFFIRRPTLDINWTGM-TNLLDIPGLSSLSDTMIMDSIAAFL 302
Query: 233 LWPKTLEVPI---LDPSKAYRRPV--GILHVKVVKAMNLKKKD------LLGASDPYVKL 281
+ P L VP+ L R P+ GI+ + ++ A L KD + G SDPY +
Sbjct: 303 VLPNRLLVPLVPDLQDVAQLRSPLPRGIIRIHLLAARGLTSKDKYVKGLIEGKSDPYALV 362
Query: 282 KITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVV 341
++ S+ V + LNP+W E Y V + Q +E+ V+D + M +
Sbjct: 363 RLGTQTFCSR---VIDEELNPQWGETYEVMVHEVPGQEIEVEVFDKDPDKDDFLGRMKLD 419
Query: 342 PLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQ 401
K L LD D Q + + L +E++ E L + + +Q V
Sbjct: 420 VGKVL-----QAGVLD-----DWFPLQGGQGQVHLRLEWLSLLSDAEKLEQVLQWNQGVS 469
Query: 402 KAPENTPAGGGLLVVIVHEAQDV---EGKHHTNPYARILFRGEERKTKHVKKNRDPRWEE 458
PE P +LVV + AQD+ +G NP ++ + +++K V P WEE
Sbjct: 470 SRPE--PPSAAILVVYLDRAQDLPLKKGNKEPNPMVQLSIQDVTQESKAVYSTNCPVWEE 527
Query: 459 EFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKR--INEKYHLI 516
F+F L++P + + L V+V S + TLG + + L+ +++ +++ + L
Sbjct: 528 AFRFFLQDPQSQE-LDVQVKDDSRAL-------TLGALTLPLARLLTAPELILDQWFQLS 579
Query: 517 DSK-NGRIQIELQWR 530
S N R+ ++L R
Sbjct: 580 SSGPNSRLYMKLVMR 594
|
May play a role as calcium-regulated intrinsic membrane protein. Pongo abelii (taxid: 9601) |
| >sp|Q9Z1X1|ESYT1_RAT Extended synaptotagmin-1 OS=Rattus norvegicus GN=Esyt1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 127 bits (318), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 136/551 (24%), Positives = 247/551 (44%), Gaps = 67/551 (12%)
Query: 18 SSGLVIGYFLF---IYFQPTDVKNPEIRPLV---------ER-DSETLQQMLPEIPLWVK 64
++GL +G+ LF +Y V++ + R L ER +ETL E+P WV
Sbjct: 65 AAGLSVGFVLFGLALYLGWRRVRDGKERSLRAARQLLDDEERITAETLYMSHRELPAWVS 124
Query: 65 CPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTLGTLP 124
PD ++ +WLNK + +WP+L + + K P + P +++ F + LG P
Sbjct: 125 FPDVEKAEWLNKIVVQVWPFLGQYMEKLLAETVAPAVRGANP--HLQTFTFTRVELGEKP 182
Query: 125 PTFQGMKVYVTDEK-ELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRITLK 183
G+KV+ + K +++++ + + + + + VK + KA V+ +Q+ R+ L+
Sbjct: 183 VRIIGVKVHPSQRKDQILLDLNVSYVGDLQIDVEVKKYFCKAGVK--GMQLHGVLRVILE 240
Query: 184 PLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFV------QVANMYLWPKT 237
PL+ P + + +++P +D + +L+ IPGL +A + P
Sbjct: 241 PLIGDLPIVGAVSMFFIKRPTLDINWTGM-TNLLDIPGLSSLSDTMIMDSIAAFLVLPNR 299
Query: 238 LEVPI---LDPSKAYRRPV--GILHVKVVKAMNLKKKD------LLGASDPYVKLKITED 286
L VP+ L R P+ GI+ + ++ A L KD + G SDPY +++
Sbjct: 300 LLVPLVPDLQDVAQLRSPLPRGIIRIHLLAARGLSSKDKYVKGLIEGKSDPYALVRVGTQ 359
Query: 287 KLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKEL 346
S+ V + LNP W E Y V + Q +E+ V+ DK L +
Sbjct: 360 TFCSR---VIDEELNPHWGETYEVIVHEVPGQEIEVEVF--------DKDPDKDDFLGRM 408
Query: 347 TPEEPSVKTLDLLKN-MDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPE 405
+ V +L N L GQ + L +E++ E L + + ++ + PE
Sbjct: 409 KLDVGKVLQAGVLDNWYPLQGGQGQV---HLRLEWLSLLPDAEKLDQVLQWNRGITSRPE 465
Query: 406 NTPAGGGLLVVIVHEAQDV---EGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQF 462
P +LVV + AQD+ +G NP ++ + +++K P WEE F+F
Sbjct: 466 --PPSAAILVVYLDRAQDLPLKKGNKEPNPMVQLSVQDVTQESKATYSTNCPVWEEAFRF 523
Query: 463 MLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVV--SNKRINEKYHLIDSK- 519
L++P + + L V+V S + TLG + + L+ ++ S +++ + L S
Sbjct: 524 FLQDPRSQE-LDVQVKDDSRAL-------TLGALTLPLARLLTASELTLDQWFQLSSSGP 575
Query: 520 NGRIQIELQWR 530
N R+ ++L R
Sbjct: 576 NSRLYMKLVMR 586
|
May play a role as calcium-regulated intrinsic membrane protein. Rattus norvegicus (taxid: 10116) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 532 | ||||||
| 225457921 | 539 | PREDICTED: extended synaptotagmin-2 isof | 1.0 | 0.987 | 0.819 | 0.0 | |
| 224080620 | 538 | plant synaptotagmin [Populus trichocarpa | 0.998 | 0.986 | 0.819 | 0.0 | |
| 359492268 | 538 | PREDICTED: extended synaptotagmin-2 isof | 0.998 | 0.986 | 0.808 | 0.0 | |
| 356538638 | 539 | PREDICTED: extended synaptotagmin-3-like | 0.996 | 0.983 | 0.819 | 0.0 | |
| 224103201 | 523 | plant synaptotagmin [Populus trichocarpa | 0.969 | 0.986 | 0.814 | 0.0 | |
| 356544874 | 539 | PREDICTED: extended synaptotagmin-2-B-li | 0.998 | 0.985 | 0.812 | 0.0 | |
| 449469877 | 539 | PREDICTED: synaptotagmin-2-like [Cucumis | 1.0 | 0.987 | 0.786 | 0.0 | |
| 147816784 | 539 | hypothetical protein VITISV_031706 [Viti | 1.0 | 0.987 | 0.812 | 0.0 | |
| 224061983 | 538 | predicted protein [Populus trichocarpa] | 1.0 | 0.988 | 0.793 | 0.0 | |
| 356564373 | 538 | PREDICTED: extended synaptotagmin-2-like | 0.998 | 0.986 | 0.787 | 0.0 |
| >gi|225457921|ref|XP_002272757.1| PREDICTED: extended synaptotagmin-2 isoform 1 [Vitis vinifera] gi|302142694|emb|CBI19897.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 938 bits (2425), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/538 (81%), Positives = 496/538 (92%), Gaps = 6/538 (1%)
Query: 1 MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIP 60
MG++STI GFCGFGVGIS GL IGY+LFIYFQPTDVK+P +RPLVE+DS+TLQ++LPEIP
Sbjct: 1 MGIVSTILGFCGFGVGISIGLFIGYYLFIYFQPTDVKDPIVRPLVEQDSKTLQRLLPEIP 60
Query: 61 LWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTL 120
WVK PDYDRVDWLNKF+E MWPYLDKAICKTAKNIAKPIIAEQIPKYKI+SVEFE LTL
Sbjct: 61 QWVKNPDYDRVDWLNKFIENMWPYLDKAICKTAKNIAKPIIAEQIPKYKIDSVEFEALTL 120
Query: 121 GTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRI 180
G+LPPTFQGMKVY TDEKELIME +KWA NPN+T+ VKAFGL+ATVQVVDLQVFA PRI
Sbjct: 121 GSLPPTFQGMKVYATDEKELIMELSMKWAGNPNITVAVKAFGLRATVQVVDLQVFAAPRI 180
Query: 181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQ------VANMYLW 234
TLKPLVP+FPCFANI+VSLMEKPHVDFGLKL+GAD+M+IPGLYR VQ VANMYLW
Sbjct: 181 TLKPLVPSFPCFANIFVSLMEKPHVDFGLKLLGADVMAIPGLYRLVQELIKDQVANMYLW 240
Query: 235 PKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTT 294
PKTLEVPI+DP+KA ++PVGIL VKVV+AM LKKKD++GASDPYVK+K++EDKLPSKKTT
Sbjct: 241 PKTLEVPIMDPAKAMKKPVGILSVKVVRAMKLKKKDIMGASDPYVKMKLSEDKLPSKKTT 300
Query: 295 VKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK 354
VKHKNLNPEWNEE+N V+DPESQA+E+ VYDWEQVGKHDKMGMNV+PLKELTP+EP V
Sbjct: 301 VKHKNLNPEWNEEFNMVVKDPESQALEVIVYDWEQVGKHDKMGMNVIPLKELTPDEPKVL 360
Query: 355 TLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLL 414
TLDLLKNMD ND QNEKSRGQ+V+E +YKPFK+ ++PK E+ ++KAPE TPAGGGLL
Sbjct: 361 TLDLLKNMDPNDVQNEKSRGQIVLEALYKPFKDTEIPKDLEDPNAIEKAPEGTPAGGGLL 420
Query: 415 VVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLH 474
V+IVHEAQ+VEGKHHTNPY R+LFRGEERKTK+VKKNRDPRWEEEFQFMLEEPPTNDR+H
Sbjct: 421 VIIVHEAQEVEGKHHTNPYVRLLFRGEERKTKYVKKNRDPRWEEEFQFMLEEPPTNDRIH 480
Query: 475 VEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQWRTA 532
VEV S SSR+GLLHPKETLGY+DINLSDVVSNKRINEKYHLIDSKNG+IQIELQWRT+
Sbjct: 481 VEVVSTSSRMGLLHPKETLGYVDINLSDVVSNKRINEKYHLIDSKNGKIQIELQWRTS 538
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224080620|ref|XP_002306182.1| plant synaptotagmin [Populus trichocarpa] gi|222849146|gb|EEE86693.1| plant synaptotagmin [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 930 bits (2404), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/538 (81%), Positives = 495/538 (92%), Gaps = 7/538 (1%)
Query: 1 MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIP 60
MG STI GFCGFGVGIS+GL IGY+LFIYFQP+DVK+PE+RPLVE DSETLQ+MLPEIP
Sbjct: 1 MGFFSTILGFCGFGVGISTGLTIGYYLFIYFQPSDVKDPEVRPLVEHDSETLQRMLPEIP 60
Query: 61 LWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTL 120
LWVK PD+DR+DWLN+F++LMWPYLDKAICKTA+NIAKPIIAEQIPKYKI++VEFETLTL
Sbjct: 61 LWVKNPDHDRIDWLNRFIQLMWPYLDKAICKTAENIAKPIIAEQIPKYKIDAVEFETLTL 120
Query: 121 GTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRI 180
GTLPPTF GMKVYVTDEKELIMEPC+KWA NPNVT+ VKAFGLKAT QVVDLQVFA PRI
Sbjct: 121 GTLPPTFHGMKVYVTDEKELIMEPCIKWAGNPNVTVAVKAFGLKATAQVVDLQVFASPRI 180
Query: 181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFV------QVANMYLW 234
TLKPLVP+FPCFANIYVSLMEKPHVDFGLKL+GADLMSIPGLYR V QVANMYLW
Sbjct: 181 TLKPLVPSFPCFANIYVSLMEKPHVDFGLKLLGADLMSIPGLYRVVQEIIKDQVANMYLW 240
Query: 235 PKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTT 294
PKTLEVPILDP+KA +RPVGIL VKV++AM LKKKDL+GA+DPYVK+K+TEDKLP+KKTT
Sbjct: 241 PKTLEVPILDPAKAMKRPVGILSVKVLRAMKLKKKDLMGAADPYVKVKLTEDKLPAKKTT 300
Query: 295 VKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK 354
VKHKNLNPEWNEE++ V+DPESQA+EL VYDWEQVGKHDKMGMNVVPLKELTPEEP +
Sbjct: 301 VKHKNLNPEWNEEFHVVVKDPESQALELRVYDWEQVGKHDKMGMNVVPLKELTPEEPKIM 360
Query: 355 TLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLL 414
TL+LLKNMDLND QNEKSRGQL+VE YKPFKE+D+ SF+E Q QKAPE TPAGGGLL
Sbjct: 361 TLELLKNMDLNDPQNEKSRGQLMVELTYKPFKEDDVNLSFKE-QVEQKAPEGTPAGGGLL 419
Query: 415 VVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLH 474
+VIVHEAQDVEGKHHTNPY R+LFRGEE++TKHVKKNRDPRWE+EFQ+ L++PP+N++LH
Sbjct: 420 LVIVHEAQDVEGKHHTNPYVRLLFRGEEKRTKHVKKNRDPRWEDEFQYTLDKPPSNEKLH 479
Query: 475 VEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQWRTA 532
VEV S SS IGLLHPKE+LGY+DINL+DVV+N+R N KYHLIDSKNG+IQIELQWR A
Sbjct: 480 VEVISTSSGIGLLHPKESLGYVDINLTDVVNNRRTNGKYHLIDSKNGQIQIELQWRPA 537
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359492268|ref|XP_003634391.1| PREDICTED: extended synaptotagmin-2 isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 921 bits (2380), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/538 (80%), Positives = 490/538 (91%), Gaps = 7/538 (1%)
Query: 1 MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIP 60
MG++STI GFCGFGVGIS GL IGY+LFIYFQPTDVK+P +RPLVE+DS+TLQ++LPEIP
Sbjct: 1 MGIVSTILGFCGFGVGISIGLFIGYYLFIYFQPTDVKDPIVRPLVEQDSKTLQRLLPEIP 60
Query: 61 LWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTL 120
WVK PDYDRVDWLNKF+E MWPYLDKAICKTAKNIAKPIIAEQIPKYKI+SVEFE LTL
Sbjct: 61 QWVKNPDYDRVDWLNKFIENMWPYLDKAICKTAKNIAKPIIAEQIPKYKIDSVEFEALTL 120
Query: 121 GTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRI 180
G+LPPTFQGMKVY TDEKELIME +KWA NPN+T+ VKAFGL+ATVQVVDLQVFA PRI
Sbjct: 121 GSLPPTFQGMKVYATDEKELIMELSMKWAGNPNITVAVKAFGLRATVQVVDLQVFAAPRI 180
Query: 181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQ------VANMYLW 234
TLKPLVP+FPCFANI+VSLMEKPHVDFGLKL+GAD+M+IPGLYR VQ VANMYLW
Sbjct: 181 TLKPLVPSFPCFANIFVSLMEKPHVDFGLKLLGADVMAIPGLYRLVQELIKDQVANMYLW 240
Query: 235 PKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTT 294
PKTLEVPI+DP+KA ++PVGIL VKVV+AM LKKKD++GASDPYVK+K++EDKLPSKKTT
Sbjct: 241 PKTLEVPIMDPAKAMKKPVGILSVKVVRAMKLKKKDIMGASDPYVKMKLSEDKLPSKKTT 300
Query: 295 VKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK 354
VKHKNLNPEWNEE+N V+DPESQA+E+ VYDWEQVGKHDKMGMNV+PLKELTP+EP V
Sbjct: 301 VKHKNLNPEWNEEFNMVVKDPESQALEVIVYDWEQVGKHDKMGMNVIPLKELTPDEPKVL 360
Query: 355 TLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLL 414
TLDLLKNMD ND QNEKSRGQ+V+E +YKPFK+ ++PK E+ ++KAPE TPAGGGLL
Sbjct: 361 TLDLLKNMDPNDVQNEKSRGQIVLEALYKPFKDTEIPKDLEDPNAIEKAPEGTPAGGGLL 420
Query: 415 VVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLH 474
V+IVHEAQ+VEGKHHTNPY R+LFRGEERKTK+VKKNRDPRWEEEFQFMLEEPPTNDR+H
Sbjct: 421 VIIVHEAQEVEGKHHTNPYVRLLFRGEERKTKYVKKNRDPRWEEEFQFMLEEPPTNDRIH 480
Query: 475 VEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQWRTA 532
VEV S SS H +ETLGY+DINLSDVVSNKRINEKYHLIDSKNG+IQIELQWRT+
Sbjct: 481 VEVVSTSSSF-FFHKQETLGYVDINLSDVVSNKRINEKYHLIDSKNGKIQIELQWRTS 537
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356538638|ref|XP_003537808.1| PREDICTED: extended synaptotagmin-3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 912 bits (2358), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/537 (81%), Positives = 485/537 (90%), Gaps = 7/537 (1%)
Query: 1 MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIP 60
MG TI GF GFGVGIS GLV GYFLFIYFQPT+V++PEI+PL E++ ETLQ+M PEIP
Sbjct: 1 MGFFGTILGFLGFGVGISIGLVAGYFLFIYFQPTNVEDPEIKPLAEQEQETLQRMFPEIP 60
Query: 61 LWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTL 120
LW+K PD+DR+DWLNKF+E MWPYLDKAICKTAKNIAKPIIAEQIPKYKI+SVEFETLTL
Sbjct: 61 LWIKNPDFDRLDWLNKFVEYMWPYLDKAICKTAKNIAKPIIAEQIPKYKIDSVEFETLTL 120
Query: 121 GTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRI 180
G+LPPTFQGMKVYVTDEKELIMEP +KWAANPNVT+ VKAFGLKATVQVVDLQVF PRI
Sbjct: 121 GSLPPTFQGMKVYVTDEKELIMEPSVKWAANPNVTVSVKAFGLKATVQVVDLQVFLLPRI 180
Query: 181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQ------VANMYLW 234
TLKPLVP+FPCFANIYVSLMEKPHVDFGLKL+GADLMSIPG+YR VQ VANMYLW
Sbjct: 181 TLKPLVPSFPCFANIYVSLMEKPHVDFGLKLIGADLMSIPGVYRIVQELIKDQVANMYLW 240
Query: 235 PKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTT 294
PKTLEV +LD SKA +RPVGILHVKV++A+ LKKKDLLGASDPYVKLK+TEDKLPSKKTT
Sbjct: 241 PKTLEVQVLDMSKALKRPVGILHVKVLQAIKLKKKDLLGASDPYVKLKLTEDKLPSKKTT 300
Query: 295 VKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK 354
VKHKNLNPEWNEE+N V+DP+SQ +E+ VYDWEQVGKHDKMGMNV+PLKE++PEE
Sbjct: 301 VKHKNLNPEWNEEFNMVVKDPDSQVLEINVYDWEQVGKHDKMGMNVIPLKEVSPEETKRF 360
Query: 355 TLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLL 414
+LDLLKNMD ND QNEKSRGQ+VVE YKPFKEEDL K FEE+QTV KAPE TPAGGGLL
Sbjct: 361 SLDLLKNMDPNDVQNEKSRGQIVVELTYKPFKEEDLGKGFEETQTVPKAPEGTPAGGGLL 420
Query: 415 VVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLH 474
VVIVHEAQDVEGK+HTNP+ R++FRGEE+KTK +KKNRDPRWE+EFQFM+EEPPTNDRLH
Sbjct: 421 VVIVHEAQDVEGKYHTNPHVRLIFRGEEKKTKRIKKNRDPRWEDEFQFMVEEPPTNDRLH 480
Query: 475 VEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQWRT 531
VEV S SSR LLH KE LGYIDINL DVV+NKRINEKYHLIDSKNGR+QIELQWRT
Sbjct: 481 VEVVSTSSR-NLLHQKEPLGYIDINLGDVVANKRINEKYHLIDSKNGRLQIELQWRT 536
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224103201|ref|XP_002312964.1| plant synaptotagmin [Populus trichocarpa] gi|222849372|gb|EEE86919.1| plant synaptotagmin [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 912 bits (2356), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/538 (81%), Positives = 481/538 (89%), Gaps = 22/538 (4%)
Query: 1 MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIP 60
MG +STI GFCGFGVG+S+GL IGY+LFIYFQPTDVK+PE+RPL E+DSETLQ++LPEIP
Sbjct: 1 MGFLSTISGFCGFGVGLSTGLTIGYYLFIYFQPTDVKDPEVRPLAEQDSETLQRILPEIP 60
Query: 61 LWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTL 120
LWVK PDYDR+DWLN+F++LMWPYLDKAICKT KNIAKPIIAEQIPKYKI++VEFETLTL
Sbjct: 61 LWVKNPDYDRIDWLNRFIQLMWPYLDKAICKTVKNIAKPIIAEQIPKYKIDAVEFETLTL 120
Query: 121 GTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRI 180
GTLPPTF GMKVYVTDEKELIMEPC+KWA NPNVT+ VKAFGLKAT QVVDLQVFA PRI
Sbjct: 121 GTLPPTFHGMKVYVTDEKELIMEPCIKWAGNPNVTVAVKAFGLKATAQVVDLQVFASPRI 180
Query: 181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFV------QVANMYLW 234
TLKPLVP+FPCFANIYVSLMEKPHVDFGLKL+GADLMSIPGLYR V QVANMYLW
Sbjct: 181 TLKPLVPSFPCFANIYVSLMEKPHVDFGLKLLGADLMSIPGLYRVVQEIIKDQVANMYLW 240
Query: 235 PKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTT 294
PKTLEVPILDP+ KAM LKKKDL+GASDPYVK+K+TEDKLP+KKTT
Sbjct: 241 PKTLEVPILDPA---------------KAMKLKKKDLMGASDPYVKIKLTEDKLPAKKTT 285
Query: 295 VKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK 354
VKHKNLNPEWNEE+N V+DPESQA+EL VYDWEQVGKHD+MGMNVVPLK+LTPEEP V
Sbjct: 286 VKHKNLNPEWNEEFNLVVKDPESQALELRVYDWEQVGKHDRMGMNVVPLKDLTPEEPKVM 345
Query: 355 TLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLL 414
TLDLLKNMDLND QNEKSRGQL+VE YKPFKE+DL KSF++ + QKAPE TPAGGGLL
Sbjct: 346 TLDLLKNMDLNDPQNEKSRGQLMVELTYKPFKEDDLNKSFKD-EVEQKAPEGTPAGGGLL 404
Query: 415 VVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLH 474
VV +HEAQDVEGKHHTNPY R+LFRGEE KTK VKKNRDPRWEEEFQF LEEPP N +LH
Sbjct: 405 VVTIHEAQDVEGKHHTNPYVRLLFRGEEMKTKRVKKNRDPRWEEEFQFTLEEPPVNAKLH 464
Query: 475 VEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQWRTA 532
VEV S SSRIGLLHPKE+LGY++INLSDVVSN+RINE+YHLIDSKNG+IQIELQWR A
Sbjct: 465 VEVVSTSSRIGLLHPKESLGYVEINLSDVVSNRRINERYHLIDSKNGKIQIELQWRPA 522
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356544874|ref|XP_003540872.1| PREDICTED: extended synaptotagmin-2-B-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 910 bits (2353), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/538 (81%), Positives = 485/538 (90%), Gaps = 7/538 (1%)
Query: 1 MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIP 60
MG TI GF GFGVGIS GLV GYFLFIYFQPT+V++PEI+PL E++ ETLQ+M PEIP
Sbjct: 1 MGFFGTILGFLGFGVGISIGLVSGYFLFIYFQPTNVEDPEIKPLSEQEQETLQRMFPEIP 60
Query: 61 LWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTL 120
LW+K PD+DR+DWLNKF+E MWPYLDKAICKTAKNIAKPIIAEQIPKYKI+SVEFETLTL
Sbjct: 61 LWIKNPDFDRLDWLNKFVEYMWPYLDKAICKTAKNIAKPIIAEQIPKYKIDSVEFETLTL 120
Query: 121 GTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRI 180
G+LPPTFQGMKV+VTDEKELIMEP +KWA NPNVT+ VKAFGLKATVQVVDLQVF PRI
Sbjct: 121 GSLPPTFQGMKVFVTDEKELIMEPSVKWAGNPNVTVSVKAFGLKATVQVVDLQVFLLPRI 180
Query: 181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQ------VANMYLW 234
TLKPLVP+FPCFANIYVSLMEKPHVDFGLKL+GADLMSIPG+YR VQ VANMYLW
Sbjct: 181 TLKPLVPSFPCFANIYVSLMEKPHVDFGLKLIGADLMSIPGVYRIVQELIKDQVANMYLW 240
Query: 235 PKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTT 294
PKTLEV +LD SKA +RPVGILHVKV++AM LKKKDLLGASDPYVKLK+TEDKLPSKKTT
Sbjct: 241 PKTLEVQVLDMSKALKRPVGILHVKVLQAMKLKKKDLLGASDPYVKLKLTEDKLPSKKTT 300
Query: 295 VKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK 354
VKH NLNPEWNEE+N V+DP+SQ +E+ VYDWEQVGK DKMGMNV+PLKE++PEEP
Sbjct: 301 VKHNNLNPEWNEEFNIVVKDPDSQVLEINVYDWEQVGKRDKMGMNVIPLKEVSPEEPKRF 360
Query: 355 TLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLL 414
TLDLLKNMD ND QNEKSRGQ+VVE YKPFKEEDL K FEE+QTV KAPE TPAGGGLL
Sbjct: 361 TLDLLKNMDPNDAQNEKSRGQIVVELTYKPFKEEDLGKGFEETQTVPKAPEGTPAGGGLL 420
Query: 415 VVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLH 474
VVIVHEAQDVEGK+HTNP+ R++FRG+E+KTK +KKNRDPRWE+EFQFM++EPPTNDRLH
Sbjct: 421 VVIVHEAQDVEGKYHTNPHVRLIFRGDEKKTKRIKKNRDPRWEDEFQFMVDEPPTNDRLH 480
Query: 475 VEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQWRTA 532
VEV S SSR LLH KE+LGYIDINL DVV+NKRINEKYHLIDSKNGR+QIELQWRT+
Sbjct: 481 VEVVSTSSR-NLLHQKESLGYIDINLGDVVANKRINEKYHLIDSKNGRLQIELQWRTS 537
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449469877|ref|XP_004152645.1| PREDICTED: synaptotagmin-2-like [Cucumis sativus] gi|449503958|ref|XP_004162238.1| PREDICTED: synaptotagmin-2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 906 bits (2341), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/538 (78%), Positives = 487/538 (90%), Gaps = 6/538 (1%)
Query: 1 MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIP 60
MG++S+I GF GFG+G S GLV GY++FIYFQP+DVK+P +RPLVE+DS +L +M+PEIP
Sbjct: 1 MGLLSSILGFFGFGLGTSIGLVAGYYMFIYFQPSDVKDPVVRPLVEQDSASLLRMMPEIP 60
Query: 61 LWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTL 120
LWVK PDYDRVDWLNKFLE+MWPYLDKAICKT +NIAKPIIAEQIPKYKI++VEF+TLTL
Sbjct: 61 LWVKNPDYDRVDWLNKFLEIMWPYLDKAICKTVRNIAKPIIAEQIPKYKIDAVEFDTLTL 120
Query: 121 GTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRI 180
G LPPT QGMKVY+TD+KELIMEPC+KWA NPNVT+ VKAFGLKATVQVVDLQVFA PRI
Sbjct: 121 GCLPPTLQGMKVYMTDDKELIMEPCMKWAGNPNVTVSVKAFGLKATVQVVDLQVFAIPRI 180
Query: 181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQ------VANMYLW 234
TLKPLVP+FPCFA I+VSLMEKPHVDFGLKL+GAD MSIPGLYRFVQ VANMYLW
Sbjct: 181 TLKPLVPSFPCFAKIFVSLMEKPHVDFGLKLLGADAMSIPGLYRFVQELIKDQVANMYLW 240
Query: 235 PKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTT 294
PKTLEV I+DP+ A ++PVGILHVKV++A+ LKKKDL GASDPY+KLK+TEDKLPSKKTT
Sbjct: 241 PKTLEVQIMDPANAMKKPVGILHVKVLRALKLKKKDLFGASDPYLKLKLTEDKLPSKKTT 300
Query: 295 VKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK 354
VKH NLNP WNEE+ F V+DPESQA+E+ +YDWEQVGKHDKMGMNVVPLKELTPEE
Sbjct: 301 VKHTNLNPVWNEEFTFVVKDPESQALEMILYDWEQVGKHDKMGMNVVPLKELTPEESKEF 360
Query: 355 TLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLL 414
TLD+LKNMD ND QNEKSRGQ+VVE +YKPFK+++ KS ++++ VQKAP+ TPAGGGLL
Sbjct: 361 TLDVLKNMDPNDTQNEKSRGQIVVEMLYKPFKDDEALKSVDDAEAVQKAPDGTPAGGGLL 420
Query: 415 VVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLH 474
V+++H+A+DVEGKHHTNPY R+LFRGEE++TKHVKKNRDPRW+EEFQF LEEPP ND++H
Sbjct: 421 VIMIHQAEDVEGKHHTNPYVRLLFRGEEKRTKHVKKNRDPRWDEEFQFTLEEPPVNDKIH 480
Query: 475 VEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQWRTA 532
VEV S SSRIGLLHPKETLGY+DINL+DVVSNKRIN KYHLIDSKNGRIQIELQWRT+
Sbjct: 481 VEVLSASSRIGLLHPKETLGYVDINLADVVSNKRINAKYHLIDSKNGRIQIELQWRTS 538
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147816784|emb|CAN71066.1| hypothetical protein VITISV_031706 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 902 bits (2332), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/538 (81%), Positives = 489/538 (90%), Gaps = 6/538 (1%)
Query: 1 MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIP 60
MG++STI GFCGFGVGIS GL IGY+LFIYFQPTDVK+P +RPLVE+DS+TLQ++LPEIP
Sbjct: 1 MGIVSTILGFCGFGVGISIGLFIGYYLFIYFQPTDVKDPIVRPLVEQDSKTLQRLLPEIP 60
Query: 61 LWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTL 120
WVK PDYDRVDWLNKF+E MWPYLDKAICKTAKNIAKPIIAEQIPKYKI+SVEFE LTL
Sbjct: 61 QWVKNPDYDRVDWLNKFIENMWPYLDKAICKTAKNIAKPIIAEQIPKYKIDSVEFEALTL 120
Query: 121 GTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRI 180
G+LPPTFQGMKVY TDEKELIME +KWA NPN+T+ VKAFGL+ATVQVVDLQVFA PRI
Sbjct: 121 GSLPPTFQGMKVYATDEKELIMELSMKWAGNPNITVAVKAFGLRATVQVVDLQVFAAPRI 180
Query: 181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQ------VANMYLW 234
TLKPLVP+FPCFANI+VSLMEKPHVDFGLKL+GAD+M+IPGLYR VQ VANMYLW
Sbjct: 181 TLKPLVPSFPCFANIFVSLMEKPHVDFGLKLLGADVMAIPGLYRLVQELIKDQVANMYLW 240
Query: 235 PKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTT 294
PKTLEVPI+DP+KA ++PVGIL VKVV+AM LKKKDL+GASDPYVK+K+ EDKLPSKKTT
Sbjct: 241 PKTLEVPIMDPAKAMKKPVGILSVKVVRAMKLKKKDLMGASDPYVKMKLXEDKLPSKKTT 300
Query: 295 VKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK 354
VK KNLNPEWNEE+N V+DPESQA+E+ VYDWEQVGKHDKMGMNV+PLKELTP+EP V
Sbjct: 301 VKXKNLNPEWNEEFNMVVKDPESQALEVXVYDWEQVGKHDKMGMNVIPLKELTPDEPKVL 360
Query: 355 TLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLL 414
TLDLLKN D ND QNEKSRGQ+V+E +YKPFK+ ++PK E+ ++KAP TPAGGGLL
Sbjct: 361 TLDLLKNXDPNDVQNEKSRGQIVLEALYKPFKDTEIPKDLEDPNAIEKAPXGTPAGGGLL 420
Query: 415 VVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLH 474
V IVHEAQ+VEGKHHTNPY R+LFRGEERKTK+ KKNRDPRWEEEF FMLEEPPTNDR+H
Sbjct: 421 VXIVHEAQEVEGKHHTNPYVRLLFRGEERKTKYXKKNRDPRWEEEFXFMLEEPPTNDRIH 480
Query: 475 VEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQWRTA 532
VEV S SSR+GLLHPKETLGY+DINLSDVVSNKRINEKYHLIDSKNG+IQIELQWRT+
Sbjct: 481 VEVVSTSSRMGLLHPKETLGYVDINLSDVVSNKRINEKYHLIDSKNGKIQIELQWRTS 538
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224061983|ref|XP_002300696.1| predicted protein [Populus trichocarpa] gi|222842422|gb|EEE79969.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 902 bits (2330), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/538 (79%), Positives = 485/538 (90%), Gaps = 6/538 (1%)
Query: 1 MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIP 60
MG++S+I GFCGFG+G S G+VIGY++FIYFQPTDVK+P +RPL+E+DS+TL ++LPEIP
Sbjct: 1 MGILSSILGFCGFGIGTSIGIVIGYYMFIYFQPTDVKDPVLRPLIEQDSKTLLRLLPEIP 60
Query: 61 LWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTL 120
WVK PDYDRVDWLNK +E MWPY++ AICKTA+NIAKPIIAEQIPKYKI+SVEFETLTL
Sbjct: 61 QWVKNPDYDRVDWLNKLIENMWPYINTAICKTARNIAKPIIAEQIPKYKIDSVEFETLTL 120
Query: 121 GTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRI 180
G+LPP F GMKVYVTDEKELIMEP LKWA NP++TI VKAFGLKATVQVVDLQVFA PRI
Sbjct: 121 GSLPPNFPGMKVYVTDEKELIMEPVLKWAGNPDITIAVKAFGLKATVQVVDLQVFAAPRI 180
Query: 181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQ------VANMYLW 234
TLKPL+P FPCFANIYVSL+EKPHVDFGLKL+GAD MSIPGLY+FVQ VANMYLW
Sbjct: 181 TLKPLLPVFPCFANIYVSLLEKPHVDFGLKLLGADAMSIPGLYKFVQELIKDQVANMYLW 240
Query: 235 PKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTT 294
PK L VPI+DPSKA +RPVGIL VKV++AM LKKKDLLGASDPYVKLK+TEDK S KTT
Sbjct: 241 PKCLVVPIMDPSKAMKRPVGILTVKVLRAMKLKKKDLLGASDPYVKLKLTEDKHHSNKTT 300
Query: 295 VKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK 354
VKHKNLNPEWNEE+N TV+DPESQA+E+ VYDWEQVGKHDKMGMNV+PLKELTP++P V
Sbjct: 301 VKHKNLNPEWNEEFNITVKDPESQALEVLVYDWEQVGKHDKMGMNVIPLKELTPDDPKVL 360
Query: 355 TLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLL 414
TLDLLKNMD ND QNEKSRGQ+VVE +YKPFKE+++PK ++ V KAPE TPAGGGL
Sbjct: 361 TLDLLKNMDPNDVQNEKSRGQIVVELVYKPFKEDEIPKDIDDPNAVAKAPEGTPAGGGLF 420
Query: 415 VVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLH 474
VVIVHEAQDVEGKHHTNPYAR+LF+GEE++TK VKK+RDPRWEEEFQF+LEE PTN+RLH
Sbjct: 421 VVIVHEAQDVEGKHHTNPYARLLFKGEEKRTKQVKKSRDPRWEEEFQFVLEEAPTNERLH 480
Query: 475 VEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQWRTA 532
VEV S SSR+GLLHPKE LGY+ INL+DVV+NKRINEKYHLIDSKNGRIQ+ELQWRT+
Sbjct: 481 VEVVSSSSRMGLLHPKENLGYVVINLADVVNNKRINEKYHLIDSKNGRIQVELQWRTS 538
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356564373|ref|XP_003550429.1| PREDICTED: extended synaptotagmin-2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 895 bits (2313), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/537 (78%), Positives = 483/537 (89%), Gaps = 6/537 (1%)
Query: 1 MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIP 60
MG++STI F GFGVG S GLVIGY+LFIYFQPTDVK+P I+PLVE+D++TLQ +LPEIP
Sbjct: 1 MGILSTIASFFGFGVGTSIGLVIGYYLFIYFQPTDVKDPVIQPLVEQDAKTLQLLLPEIP 60
Query: 61 LWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTL 120
W+K PDYDR+DWLNKF+ MWPYLDKAICKTA++IAKPIIAEQIPKYKI+SVEFE L+L
Sbjct: 61 TWIKNPDYDRLDWLNKFILYMWPYLDKAICKTARSIAKPIIAEQIPKYKIDSVEFEELSL 120
Query: 121 GTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRI 180
G+LPPTFQGMKVYVTDEKELIMEP +KWA NPN+ + +KAFGL+ATVQVVDLQVFA PRI
Sbjct: 121 GSLPPTFQGMKVYVTDEKELIMEPSVKWAGNPNIIVAIKAFGLRATVQVVDLQVFAAPRI 180
Query: 181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQ------VANMYLW 234
TLKPLVP+FPCFANIY+SLMEKPHVDFGLKL+GAD MSIPGLYR VQ VANMYLW
Sbjct: 181 TLKPLVPSFPCFANIYMSLMEKPHVDFGLKLLGADAMSIPGLYRIVQEIIKDQVANMYLW 240
Query: 235 PKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTT 294
PK LEV I+DP+KA + PVGILHVKVV+A LKKKDLLGASDPYVKLK+TE+KLPSKKTT
Sbjct: 241 PKALEVQIMDPTKAMKVPVGILHVKVVRAEKLKKKDLLGASDPYVKLKLTEEKLPSKKTT 300
Query: 295 VKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK 354
VK+KNLNPEWNEE+N V+DPESQ +EL VYDWEQ+GKHDKMGMNV+PLKE+TP+EP V
Sbjct: 301 VKYKNLNPEWNEEFNVVVKDPESQVLELTVYDWEQIGKHDKMGMNVIPLKEITPDEPKVV 360
Query: 355 TLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLL 414
TL+LLK MD ND +NEK RGQL VE +YKPFKE++LP+S E+S ++KAPE TPA GGLL
Sbjct: 361 TLNLLKTMDPNDPENEKLRGQLTVEVLYKPFKEDELPQSTEDSNAIEKAPEGTPASGGLL 420
Query: 415 VVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLH 474
V+IVHEA+DVEGKHHTNPY R+LF+GEERKTKHVKKNRDPRW E FQFMLEEPPTN+RL+
Sbjct: 421 VIIVHEAEDVEGKHHTNPYVRLLFKGEERKTKHVKKNRDPRWGESFQFMLEEPPTNERLY 480
Query: 475 VEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQWRT 531
VEV S SS++GLLHPKE+LGY+DI LSDVV+NKRINEKYHLIDS+NGRIQIELQWRT
Sbjct: 481 VEVQSASSKLGLLHPKESLGYVDIKLSDVVTNKRINEKYHLIDSRNGRIQIELQWRT 537
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 532 | ||||||
| TAIR|locus:2198581 | 537 | SYTB "AT1G20080" [Arabidopsis | 0.996 | 0.986 | 0.717 | 8.2e-218 | |
| TAIR|locus:2146688 | 540 | SYTC "AT5G04220" [Arabidopsis | 0.998 | 0.983 | 0.534 | 2.8e-160 | |
| TAIR|locus:2047027 | 256 | AT2G21010 "AT2G21010" [Arabido | 0.477 | 0.992 | 0.660 | 1.4e-94 | |
| TAIR|locus:2184931 | 569 | SYTD "AT5G11100" [Arabidopsis | 0.719 | 0.673 | 0.325 | 2.9e-60 | |
| TAIR|locus:2201036 | 560 | NTMC2T2.1 "AT1G05500" [Arabido | 0.635 | 0.603 | 0.353 | 8e-53 | |
| TAIR|locus:2100992 | 510 | NTMC2T4 [Arabidopsis thaliana | 0.757 | 0.790 | 0.308 | 7.2e-52 | |
| FB|FBgn0039208 | 849 | Esyt2 [Drosophila melanogaster | 0.851 | 0.533 | 0.250 | 3.6e-36 | |
| TAIR|locus:2047132 | 261 | AT2G21040 "AT2G21040" [Arabido | 0.163 | 0.333 | 0.735 | 4e-33 | |
| WB|WBGene00020443 | 713 | esyt-2 [Caenorhabditis elegans | 0.838 | 0.625 | 0.246 | 3.5e-32 | |
| MGI|MGI:1261845 | 845 | Esyt2 "extended synaptotagmin- | 0.838 | 0.527 | 0.248 | 7.7e-32 |
| TAIR|locus:2198581 SYTB "AT1G20080" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2104 (745.7 bits), Expect = 8.2e-218, P = 8.2e-218
Identities = 386/538 (71%), Positives = 463/538 (86%)
Query: 1 MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIP 60
MG+ISTI G GFG G + G+VIGY+LFIYFQ TDV++PEI+PLVE DSET+ M PEIP
Sbjct: 1 MGIISTILGVIGFGFGTTIGIVIGYYLFIYFQSTDVEDPEIKPLVELDSETIATMFPEIP 60
Query: 61 LWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTL 120
+WVK PD+DR+DWLNK + MWPY+DKAICK AK+IAKPIIAEQIP YKI+SVEFE LTL
Sbjct: 61 MWVKNPDFDRIDWLNKLIGHMWPYMDKAICKMAKSIAKPIIAEQIPNYKIDSVEFEMLTL 120
Query: 121 GTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRI 180
G+LPP+FQGMKVY TD+KE+IME +KWA NPN+ + KAFGLKATVQV+DLQV+A PRI
Sbjct: 121 GSLPPSFQGMKVYATDDKEIIMELSVKWAGNPNIIVVAKAFGLKATVQVIDLQVYATPRI 180
Query: 181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQ------VANMYLW 234
TLKPLVP+FPCFANI+VSLM+KP VDFGLKL+GAD+M+IPGLYRFVQ VANMYLW
Sbjct: 181 TLKPLVPSFPCFANIFVSLMDKPQVDFGLKLLGADVMAIPGLYRFVQEIIKDQVANMYLW 240
Query: 235 PKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTT 294
PKTL V I+DPSKA ++PVG+L VKV+KA+ LKKKDLLG SDPYVKL ++ DK+P KKT
Sbjct: 241 PKTLNVQIMDPSKAMKKPVGLLSVKVIKAIKLKKKDLLGGSDPYVKLTLSGDKVPGKKTV 300
Query: 295 VKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK 354
VKH NLNPEWNEE++ V++PESQ ++L VYDWEQVGKHDK+GMNV+ LK+LTPEEP +
Sbjct: 301 VKHSNLNPEWNEEFDLVVKEPESQELQLIVYDWEQVGKHDKIGMNVIQLKDLTPEEPKLM 360
Query: 355 TLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLL 414
TL+LLK+M+ + +EKSRGQLVVE YKPFK++D+P++ ++ V+KAPE TP+ GGLL
Sbjct: 361 TLELLKSMEPKEPVSEKSRGQLVVEVEYKPFKDDDIPENIDDPNAVEKAPEGTPSTGGLL 420
Query: 415 VVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLH 474
VVIVHEA+D+EGK+HTNP R+LFRGEERKTK VKKNR+PRW+E+FQF L+EPP ND+LH
Sbjct: 421 VVIVHEAEDLEGKYHTNPSVRLLFRGEERKTKRVKKNREPRWDEDFQFPLDEPPINDKLH 480
Query: 475 VEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQWRTA 532
VEV S SSR L+HPKETLGY+ INL DVVSN+RIN+KYHLIDSKNGRIQIELQWR +
Sbjct: 481 VEVISSSSR--LIHPKETLGYVVINLGDVVSNRRINDKYHLIDSKNGRIQIELQWRNS 536
|
|
| TAIR|locus:2146688 SYTC "AT5G04220" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1561 (554.6 bits), Expect = 2.8e-160, P = 2.8e-160
Identities = 289/541 (53%), Positives = 388/541 (71%)
Query: 1 MGVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPEIP 60
MG +++ G GF +GI GL++G+F+ IY QP+ + P RPLVE L +LP+IP
Sbjct: 1 MGFFTSVLGIIGFVIGIPIGLILGFFVLIYSQPSHQEYPPARPLVETSISVLLDLLPDIP 60
Query: 61 LWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTL 120
LW+K PDY+RVDW NKF+ MWPYLDKA+C ++ +P+ A+ I + IES+EFE L+L
Sbjct: 61 LWMKNPDYERVDWFNKFISYMWPYLDKAVCGIIRSSVQPLFADYIGTFCIESIEFENLSL 120
Query: 121 GTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQPRI 180
GTLPPT G+K Y T+EKEL+ EP +KWA NPN+ + +K L+ VQ+VDLQ FA R+
Sbjct: 121 GTLPPTVHGVKFYETNEKELLFEPSIKWAGNPNIVLVLKVLSLRIRVQLVDLQFFAIVRV 180
Query: 181 TLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQ------VANMYLW 234
LKPL+P FPCF + VSLMEKPHVDFGLK++G DLMSIPGLYR+VQ V++MY W
Sbjct: 181 ALKPLLPTFPCFGMVVVSLMEKPHVDFGLKVLGGDLMSIPGLYRYVQETIKRQVSSMYHW 240
Query: 235 PKTLEVPILDPSKA-YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKT 293
P+ LE+PILD S A ++PVG+LHV +++A NL KKDLLG SDPYVKL +T +KLP+KKT
Sbjct: 241 PQVLEIPILDSSTASVKKPVGLLHVSILRARNLLKKDLLGTSDPYVKLSLTGEKLPAKKT 300
Query: 294 TVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSV 353
T+K +NLNPEWNE + V+DP SQ ++L V+DW++VG HD++GM ++PL+++ P E
Sbjct: 301 TIKKRNLNPEWNEHFKLIVKDPNSQVLQLEVFDWDKVGGHDRLGMQMIPLQKINPGERKE 360
Query: 354 KTLDLLKNMDL-NDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGG 412
LDL+KN ++ D ++K RG+L V+ Y PF+EE + + E + ++ + G
Sbjct: 361 FNLDLIKNSNVVMDSGDKKKRGRLEVDLRYVPFREESIKRRKESREEKSSEDDDFLSQAG 420
Query: 413 LLVVIVHEAQDVEGKH-HTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTND 471
LL V V A+DVEGK H+NPYA +LFRGE++KTK +KK RDPRW EEFQF LEEPP +
Sbjct: 421 LLSVAVQSAKDVEGKKKHSNPYAVVLFRGEKKKTKMLKKTRDPRWNEEFQFTLEEPPVKE 480
Query: 472 RLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQWRT 531
+ VEV S + KE LG++DINL DVV N RIN+KYHLI+S+NG I IE++W T
Sbjct: 481 SIRVEVMSKGTGFHF-RSKEELGHVDINLDDVVDNGRINQKYHLINSRNGIIHIEIRWTT 539
Query: 532 A 532
+
Sbjct: 540 S 540
|
|
| TAIR|locus:2047027 AT2G21010 "AT2G21010" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 941 (336.3 bits), Expect = 1.4e-94, P = 1.4e-94
Identities = 173/262 (66%), Positives = 214/262 (81%)
Query: 272 LGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVG 331
+G +PYV+++++EDK+ SKKTTVKHKNLNPEWNEE+ F+VRDP++Q +E VY WE++G
Sbjct: 1 MGMINPYVQIELSEDKISSKKTTVKHKNLNPEWNEEFKFSVRDPKTQVLEFNVYGWEKIG 60
Query: 332 KHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLND-GQNEKSRGQLVVEFIYKPFKEEDL 390
KHDKMGMNV+ LKEL P+E TL+L K +D + GQ K RG+L VE +YKPF EE++
Sbjct: 61 KHDKMGMNVLALKELAPDERKAFTLELRKTLDGGEEGQPGKYRGKLEVELLYKPFTEEEM 120
Query: 391 PKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKK 450
Q VQKAPE TP GG+LVVIVH A+DVEGKHHTNPY I F+GEERKTK+VKK
Sbjct: 121 -------QAVQKAPEGTPVAGGMLVVIVHSAEDVEGKHHTNPYVHIYFKGEERKTKNVKK 173
Query: 451 NRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRIN 510
N+DP+W EEF FMLEEPP +++LHVEV S SSRIGLLHPKETLGY+DI + DVV+NKR+N
Sbjct: 174 NKDPKWNEEFSFMLEEPPVHEKLHVEVFSTSSRIGLLHPKETLGYVDIPVVDVVNNKRMN 233
Query: 511 EKYHLIDSKNGRIQIELQWRTA 532
+K+HLIDSKNG+IQIEL W+TA
Sbjct: 234 QKFHLIDSKNGKIQIELDWQTA 255
|
|
| TAIR|locus:2184931 SYTD "AT5G11100" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 534 (193.0 bits), Expect = 2.9e-60, Sum P(2) = 2.9e-60
Identities = 132/405 (32%), Positives = 213/405 (52%)
Query: 7 IFGFCGFGVGISSGLVIGYFLFIYFQPT---DVKNPEIRPLVERDSETLQQMLPE--IPL 61
+FG G+ +S GLV+ + + + T D+ I + +++LP P
Sbjct: 4 LFGLF-IGIAVSFGLVVAFARYSSVRSTRRADLAKT-IAAFARMTVQDSRKLLPGDFYPS 61
Query: 62 WVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTLG 121
WV +++WLN LE +WPY+++A + K+ +P++ + P + S++F TLG
Sbjct: 62 WVVFSQRQKLNWLNLELEKIWPYVNEAASELIKSSVEPVLEQYTPAM-LASLKFSKFTLG 120
Query: 122 TLPPTFQGMKVYVTDE--KELIMEPCLKWAANPNVTIGVKAF-GLKATVQVVDLQVFAQP 178
T+ P F G+ + ++ + ME ++W NP + + VK G+ ++V ++
Sbjct: 121 TVAPQFTGVSILESESGPNGITMELEMQWDGNPKIVLDVKTLLGVSLPIEVKNIGFTGVF 180
Query: 179 RITLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQ------VANMY 232
R+ KPLV FPCF + SL EK +DF LK++G +L SIPG+ ++ + +
Sbjct: 181 RLIFKPLVDEFPCFGALSYSLREKKGLDFTLKVIGGELTSIPGISDAIEETIRDAIEDSI 240
Query: 233 LWPKTLEVPIL--DPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPS 290
WP +PIL D S +PVG L VKVV+A +L KD++G SDPY + I +
Sbjct: 241 TWPVRKIIPILPGDYSDLELKPVGKLDVKVVQAKDLANKDMIGKSDPYAIVFIRPLPDRT 300
Query: 291 KKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEE 350
KKT +LNP WNE + F V D +Q + + V+D E VG +G VPL EL P +
Sbjct: 301 KKTKTISNSLNPIWNEHFEFIVEDVSTQHLTVRVFDDEGVGSSQLIGAAQVPLNELVPGK 360
Query: 351 PSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF-KEEDLPKSF 394
L L+K++++ ++ K+RGQ+ +E +Y P KE L F
Sbjct: 361 VKDIWLKLVKDLEIQ--RDTKNRGQVQLELLYCPLGKEGGLKNPF 403
|
|
| TAIR|locus:2201036 NTMC2T2.1 "AT1G05500" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
Identities = 125/354 (35%), Positives = 199/354 (56%)
Query: 42 RPLVERDSETLQQMLPEI-PLWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPI 100
R VE DS L + PE P WV + ++ WLN L +WPY+D+A + K +P+
Sbjct: 44 RMTVE-DSRKL--LPPEFYPSWVVFSERQKLTWLNHHLTKIWPYVDEAASELIKASVEPV 100
Query: 101 IAEQIPKYKIESVEFETLTLGTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKA 160
+ + P + S+ F LTLGT+ P F G+ V D+ + +E ++W NPN+ +GVK
Sbjct: 101 LEQYRPAI-VASLTFSKLTLGTVAPQFTGVSVIDGDKNGITLELDMQWDGNPNIVLGVKT 159
Query: 161 F-GLKATVQVVDLQVFAQPRITLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLMSI 219
G+ +QV ++ R+ +PLV FPCF + VSL EK +DF LK+VG D+ +I
Sbjct: 160 LVGVSLPIQVKNIGFTGVFRLIFRPLVEDFPCFGAVSVSLREKKKLDFTLKVVGGDISAI 219
Query: 220 PGLYRFVQ------VANMYLWPKTLEVPIL--DPSKAYRRPVGILHVKVVKAMNLKKKDL 271
PGL ++ V + WP +PI+ D S +PVG+L VK+V+A NL KDL
Sbjct: 220 PGLSEAIEETIRDAVEDSITWPVRKVIPIIPGDYSDLELKPVGMLEVKLVQAKNLTNKDL 279
Query: 272 LGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVG 331
+G SDP+ K+ I + +K++ + +LNP WNE + F V D +Q + + +YD E V
Sbjct: 280 VGKSDPFAKMFIRPLREKTKRSKTINNDLNPIWNEHFEFVVEDASTQHLVVRIYDDEGVQ 339
Query: 332 KHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF 385
+ +G + L EL P + L L+K++++ ++ K+RG++ +E +Y P+
Sbjct: 340 ASELIGCAQIRLCELEPGKVKDVWLKLVKDLEIQ--RDTKNRGEVHLELLYIPY 391
|
|
| TAIR|locus:2100992 NTMC2T4 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
Identities = 131/425 (30%), Positives = 220/425 (51%)
Query: 1 MGVISTI-FGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVERDSETLQQMLPE- 58
MG+IS I FG FGV + +G + K +++ L + L+++ +
Sbjct: 1 MGLISGILFGII-FGVALMAGW--SRMMTHRSSKRVAKAVDMKLLGSLSRDDLKKICGDN 57
Query: 59 IPLWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETL 118
P W+ P +++V WLNK L MWPY+ +A ++ +P++ + P I S++F L
Sbjct: 58 FPQWISFPAFEQVKWLNKLLSKMWPYIAEAATMVIRDSVEPLLEDYRPP-GITSLKFSKL 116
Query: 119 TLGTLPPTFQGMKVYVTDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVFAQP 178
TLG + P +G++V E ++ M+ L+W +PN+ +GV A +Q+ DLQVF
Sbjct: 117 TLGNVAPKIEGIRVQSFKEGQVTMDVDLRWGGDPNIVLGVTALVASIPIQLKDLQVFTVA 176
Query: 179 RITLKPLVPAFPCFANIYVSLME--KPHVDFGLKLVGADLMSIPGLYRFVQ------VAN 230
R+ + L PC + + V+L+ KP +D+ LK VG L +IPGL + V +
Sbjct: 177 RVIFQ-LADEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTAIPGLSDMIDDTVDTIVKD 235
Query: 231 MYLWPKTLEVPI----LDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED 286
M WP + VPI +D S +P G L V VVKA NLK K+L+G SDPY + I
Sbjct: 236 MLQWPHRIVVPIGGIPVDLSDLELKPQGKLIVTVVKATNLKNKELIGKSDPYATIYIRP- 294
Query: 287 KLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKEL 346
+ KT NLNP W++ + D E+Q++ + V+D + VG+ +++G+ +PL L
Sbjct: 295 -VFKYKTKAIENNLNPVWDQTFELIAEDKETQSLTVEVFD-KDVGQDERLGLVKLPLSSL 352
Query: 347 TPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPEN 406
L+LL ++D +++K RG + ++ Y F +E+ + E+ + + + +
Sbjct: 353 EAGVTKELELNLLSSLDTLKVKDKKDRGSITLKVHYHEFNKEEQMAALEDEKKIMEERKR 412
Query: 407 TPAGG 411
G
Sbjct: 413 LKEAG 417
|
|
| FB|FBgn0039208 Esyt2 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 399 (145.5 bits), Expect = 3.6e-36, P = 3.6e-36
Identities = 126/503 (25%), Positives = 234/503 (46%)
Query: 1 MGVISTIF--GFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPL--VERDSETLQQML 56
+ ++ +I+ G+ G+ V VI T K +I + + + + +
Sbjct: 84 VAIVGSIYLVGYMGWSVAWLIAPVILSVARDQLAKTSEKKRDIAKASALASEKDVILARI 143
Query: 57 PEIPLWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFE 116
E+P WV PD +R +WLNK L+ +WP + K +P +A + YK+ F+
Sbjct: 144 DELPAWVYFPDVERCEWLNKILKQVWPNANHFARTLVKETIEPNVALALANYKMHGFRFD 203
Query: 117 TLTLGTLPPTFQGMKVYV--TDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQV 174
+ LGT+PP G+K+Y D E+IM+ L +A++ ++ + G+K ++ D Q+
Sbjct: 204 RIILGTIPPRIGGVKIYDKNVDRNEIIMDLDLFYASDCDINFYLG--GMKGGIK--DFQI 259
Query: 175 FAQPRITLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGA-DLMSIPGLY----RFV--Q 227
R+ +KPL+ + P + + + P++DF L VG D M +PGL R + Q
Sbjct: 260 HGWVRVVMKPLIRSMPLVGGLQIFFLNNPNIDFNL--VGVIDFMDMPGLSDLLRRIIVEQ 317
Query: 228 VANMYLWPKTLEVPILDPSKAYR----RPVGILHVKVVKAMNLKKKDLL----GASDPYV 279
+ N+ + P L + + + A P GIL + VV+A +L KKD+ G SDPY
Sbjct: 318 IGNVMVLPNKLPISLSEEVSAVALKMPEPEGILRIHVVEAKDLMKKDISVLGKGKSDPYA 377
Query: 280 KLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMN 339
+ + + KT + N+NP+W+ TV Q VE+ + D + K + +G
Sbjct: 378 IINVGAQEF---KTQIIDNNVNPKWDYWCEATVFIEMGQFVEIQLKDSDDSKKDENLGRA 434
Query: 340 VVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFI-YKPFKE-EDLPKSFEES 397
+ + + + +D + L D ++ G L V YK + DL + E+
Sbjct: 435 SIDIASVIKKG----VVDSW--LTLEDAKH----GLLHVRLQWYKLTADPNDLQQILLET 484
Query: 398 QTVQKAPENTPAGGGLLVVIVHEAQDVEGKHHTN---PYARILFRGEERKTKHVKKNRDP 454
Q ++ T +L V + A+ ++ ++ PY ++++T + ++ P
Sbjct: 485 QLLRV----TSMSSAVLSVFIDSARHLKQARSSSKPDPYLVCSVNKQKQQTAMIMRDDSP 540
Query: 455 RWEEEFQFMLEEPPTNDRLHVEV 477
WE+ F F++ P N+ L++++
Sbjct: 541 VWEQGFTFLVSNPD-NESLNIKI 562
|
|
| TAIR|locus:2047132 AT2G21040 "AT2G21040" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 362 (132.5 bits), Expect = 4.0e-33, P = 4.0e-33
Identities = 64/87 (73%), Positives = 74/87 (85%)
Query: 398 QTVQKAPENTPAGGGLLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWE 457
Q VQKAPE TPA GG+ VVIVH A+DVEGKHHTNPY I F+GEERKTKHVKKN+DP+W
Sbjct: 2 QAVQKAPEGTPAAGGMFVVIVHSAEDVEGKHHTNPYVHIYFKGEERKTKHVKKNKDPKWN 61
Query: 458 EEFQFMLEEPPTNDRLHVEVCSVSSRI 484
EEF FMLEEPP ++++HV+V S SSRI
Sbjct: 62 EEFSFMLEEPPIHEKMHVKVFSTSSRI 88
|
|
| WB|WBGene00020443 esyt-2 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 373 (136.4 bits), Expect = 3.5e-32, P = 3.5e-32
Identities = 123/498 (24%), Positives = 238/498 (47%)
Query: 41 IRPLVERDSETLQQMLPEIPLWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKN-IAKP 99
+R R+ E + L ++P WV+ PD +RV+WLNK + +WPY+ + KT N P
Sbjct: 57 LRATALREREVIMAQLQDLPAWVQFPDTERVEWLNKVIHQLWPYVGE-YTKTFMNDFIIP 115
Query: 100 IIAEQIPKYKIESVEFETLTLGTLPPTFQGMKVYVTD--EKELIMEPCLKWAANPNVTIG 157
+ Q+P ++ +F + +G +P G+KVY T+ +I++ + +A + + T+
Sbjct: 116 QVKAQMPGM-FKNFKFTKMDMGDIPCRVGGIKVYTTNVGRDRIIVDMDVAYAGDADFTVS 174
Query: 158 VKAFGLKATVQVVDLQVFAQPRITLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGADLM 217
F T + ++Q + R LKPL+P P + + +E P +DF L +G +++
Sbjct: 175 CCGF----TGGMNNIQFSGKLRAILKPLLPYPPMVGGVSGTFLEMPKMDFNLTGMG-EMV 229
Query: 218 SIPGLY---RFV---QVANMYLWPKTLEVPI---LDPSKAY-RRPVGILHVKVVKAMNLK 267
+PGL R V Q+A + + P + VP+ +D ++ Y P G++ +K+++A NL+
Sbjct: 230 ELPGLIDAIRSVINSQIAALCVLPNEIVVPLAPDVDVTQLYFPEPDGVVRLKIIEAKNLE 289
Query: 268 KKDLL----GASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELA 323
+D+ G SDPY ++++ KT +LNP WNE + V + Q + +
Sbjct: 290 NRDISFIKKGKSDPYAEIQVGSQFF---KTRTIDDDLNPIWNEYFEAVVDQADGQKLRIE 346
Query: 324 VYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 383
++D +Q GK +++G V LK + + T+D K L ++ G L ++ +
Sbjct: 347 LFDEDQ-GKDEELGRLSVDLKLVQAKG----TID--KWYPLEGCKH----GDLHIKATWM 395
Query: 384 PFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDV---EGKHHTNPYARILFRG 440
E L ++ + + P LL+V + D+ + K +P+ +
Sbjct: 396 NLSTE-LRHLEKQEWEAEWGQADKPIHSALLMVYIDSVADLPYPKSKLEPSPFVEVSLGK 454
Query: 441 EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINL 500
E ++T K +P ++ +F F + + L E +R +LG ++I L
Sbjct: 455 ETQRTPVKVKTVNPLFQSKFLFFVRHLEGQE-LKFEAVDDGTR-------RSLGSLNIPL 506
Query: 501 SDVVSNKRI--NEKYHLI 516
+ ++ + N++ H++
Sbjct: 507 TTLLKEPNLEQNQQMHML 524
|
|
| MGI|MGI:1261845 Esyt2 "extended synaptotagmin-like protein 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 372 (136.0 bits), Expect = 7.7e-32, P = 7.7e-32
Identities = 124/499 (24%), Positives = 239/499 (47%)
Query: 58 EIPLWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFET 117
++P WV PD +R +WLNK ++ MWP++ + I K + +P + + + F
Sbjct: 106 DLPAWVHFPDTERAEWLNKTVKHMWPFICQFIEKLFRETIEPAVRGA--NAHLSTFSFTK 163
Query: 118 LTLGTLPPTFQGMKVYV--TDEKELIMEPCLKWAANPNVTIGVKAFGLKATVQVVDLQVF 175
+ +G P G+KVY D++++I++ + + N + + +K + +A V+ +Q+
Sbjct: 164 VDVGQQPLRVNGVKVYTENVDKRQIILDLQISFVGNCEIDLEIKRYFCRAGVK--SIQIH 221
Query: 176 AQPRITLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVG-ADLMSIPGLYRFVQ------V 228
R+ L+PL+ P + + + KP ++ + G +L+ IPGL +
Sbjct: 222 GTMRVILEPLIGDMPLVGALSIFFLRKPLLE--INWTGLTNLLDIPGLNGLSDTIILDII 279
Query: 229 ANMYLWPKTLEVPILDPSK-AYRR---PVGILHVKVVKAMNLKKKD------LLGASDPY 278
+N + P + VP++ + A R P G+L + ++A +L+ KD + G SDPY
Sbjct: 280 SNYLVLPNRITVPLVSEVQIAQLRFPIPKGVLRIHFIEAQDLQGKDTYLKGLVKGKSDPY 339
Query: 279 VKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGM 338
+++ SK +K +NL+P+WNE Y V + Q +E+ ++D E K D +G
Sbjct: 340 GIIRVGNQIFQSK--VIK-ENLSPKWNEVYEALVYEHPGQELEIELFD-EDPDKDDFLGS 395
Query: 339 NVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQ 398
++ L E+ E + LD +D + K + L +E++ +L K + +
Sbjct: 396 LMIDLIEVEKE----RLLDEWFTLD----EVPKGKLHLKLEWLTLMPDAANLDKVLADIR 447
Query: 399 TVQKAPENTPAGGGLLVVIVHEAQDV-EGKH---HTNPYARILFRGEERKTKHVKKNRDP 454
K + LL++ + A+++ GK + NP ++ + +++K K +P
Sbjct: 448 A-DKDQASDGLSSALLILYLDSARNLPSGKKINSNPNPLVQMSVGHKAQESKIRYKTSEP 506
Query: 455 RWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVS--NKRINEK 512
WEE F F + P D L VEV + +LG + I LS +++ N IN++
Sbjct: 507 VWEENFTFFIHNPRRQD-LEVEVKDEQHQC-------SLGSLRIPLSQLLTSDNMTINQR 558
Query: 513 YHLIDS-KNGRIQIELQWR 530
+ L +S N +++++ R
Sbjct: 559 FQLSNSGPNSTLKMKIALR 577
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B6ETT4 | SYT2_ARATH | No assigned EC number | 0.7174 | 0.9962 | 0.9869 | no | no |
| Q9SKR2 | SYT1_ARATH | No assigned EC number | 0.7648 | 1.0 | 0.9833 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 532 | |||
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 1e-41 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 4e-26 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 8e-26 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 9e-26 | |
| cd04040 | 115 | cd04040, C2D_Tricalbin-like, C2 domain fourth repe | 2e-20 | |
| cd04033 | 133 | cd04033, C2_NEDD4_NEDD4L, C2 domain present in the | 9e-19 | |
| cd08402 | 136 | cd08402, C2B_Synaptotagmin-1, C2 domain second rep | 3e-18 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 4e-18 | |
| cd04035 | 123 | cd04035, C2A_Rabphilin_Doc2, C2 domain first repea | 7e-16 | |
| cd08384 | 133 | cd08384, C2B_Rabphilin_Doc2, C2 domain second repe | 1e-15 | |
| cd08386 | 125 | cd08386, C2A_Synaptotagmin-7, C2A domain first rep | 2e-15 | |
| cd08385 | 124 | cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain | 3e-15 | |
| cd08387 | 124 | cd08387, C2A_Synaptotagmin-8, C2A domain first rep | 4e-15 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 4e-15 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 6e-15 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 2e-14 | |
| cd00276 | 134 | cd00276, C2B_Synaptotagmin, C2 domain second repea | 2e-14 | |
| cd08405 | 136 | cd08405, C2B_Synaptotagmin-7, C2 domain second rep | 3e-14 | |
| cd04025 | 123 | cd04025, C2B_RasA1_RasA4, C2 domain second repeat | 3e-14 | |
| cd04026 | 131 | cd04026, C2_PKC_alpha_gamma, C2 domain in Protein | 4e-14 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 5e-14 | |
| cd08403 | 134 | cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s | 8e-14 | |
| cd04042 | 121 | cd04042, C2A_MCTP_PRT, C2 domain first repeat foun | 1e-13 | |
| cd04030 | 127 | cd04030, C2C_KIAA1228, C2 domain third repeat pres | 2e-13 | |
| cd04037 | 124 | cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer | 3e-13 | |
| cd04036 | 119 | cd04036, C2_cPLA2, C2 domain present in cytosolic | 5e-13 | |
| cd08376 | 116 | cd08376, C2B_MCTP_PRT, C2 domain second repeat fou | 5e-13 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 4e-12 | |
| cd04043 | 126 | cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma | 9e-12 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 1e-11 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 1e-11 | |
| cd08404 | 136 | cd08404, C2B_Synaptotagmin-4, C2 domain second rep | 2e-11 | |
| cd04047 | 110 | cd04047, C2B_Copine, C2 domain second repeat in Co | 2e-11 | |
| cd08676 | 153 | cd08676, C2A_Munc13-like, C2 domain first repeat i | 3e-11 | |
| cd04046 | 126 | cd04046, C2_Calpain, C2 domain present in Calpain | 7e-11 | |
| cd04050 | 105 | cd04050, C2B_Synaptotagmin-like, C2 domain second | 1e-10 | |
| cd08390 | 123 | cd08390, C2A_Synaptotagmin-15-17, C2A domain first | 1e-10 | |
| cd08373 | 127 | cd08373, C2A_Ferlin, C2 domain first repeat in Fer | 2e-10 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 3e-10 | |
| cd08675 | 137 | cd08675, C2B_RasGAP, C2 domain second repeat of Ra | 3e-10 | |
| cd08382 | 123 | cd08382, C2_Smurf-like, C2 domain present in Smad | 4e-10 | |
| cd00275 | 128 | cd00275, C2_PLC_like, C2 domain present in Phospho | 4e-10 | |
| cd08373 | 127 | cd08373, C2A_Ferlin, C2 domain first repeat in Fer | 6e-10 | |
| cd04044 | 124 | cd04044, C2A_Tricalbin-like, C2 domain first repea | 8e-10 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 4e-09 | |
| cd04030 | 127 | cd04030, C2C_KIAA1228, C2 domain third repeat pres | 4e-09 | |
| cd04020 | 162 | cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat | 1e-08 | |
| cd04027 | 127 | cd04027, C2B_Munc13, C2 domain second repeat in Mu | 2e-08 | |
| cd04009 | 133 | cd04009, C2B_Munc13-like, C2 domain second repeat | 3e-08 | |
| cd08521 | 123 | cd08521, C2A_SLP, C2 domain first repeat present i | 3e-08 | |
| cd04021 | 125 | cd04021, C2_E3_ubiquitin_ligase, C2 domain present | 4e-08 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 5e-08 | |
| cd04050 | 105 | cd04050, C2B_Synaptotagmin-like, C2 domain second | 1e-07 | |
| cd04054 | 121 | cd04054, C2A_Rasal1_RasA4, C2 domain first repeat | 1e-07 | |
| cd04041 | 111 | cd04041, C2A_fungal, C2 domain first repeat; funga | 1e-07 | |
| cd04052 | 111 | cd04052, C2B_Tricalbin-like, C2 domain second repe | 1e-07 | |
| cd04049 | 124 | cd04049, C2_putative_Elicitor-responsive_gene, C2 | 2e-07 | |
| cd08410 | 135 | cd08410, C2B_Synaptotagmin-17, C2 domain second re | 2e-07 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 3e-07 | |
| cd04031 | 125 | cd04031, C2A_RIM1alpha, C2 domain first repeat con | 3e-07 | |
| cd04045 | 120 | cd04045, C2C_Tricalbin-like, C2 domain third repea | 3e-07 | |
| cd08678 | 126 | cd08678, C2_C21orf25-like, C2 domain found in the | 4e-07 | |
| cd08682 | 126 | cd08682, C2_Rab11-FIP_classI, C2 domain found in R | 4e-07 | |
| cd08681 | 118 | cd08681, C2_fungal_Inn1p-like, C2 domain found in | 5e-07 | |
| cd04039 | 108 | cd04039, C2_PSD, C2 domain present in Phosphatidyl | 5e-07 | |
| cd08682 | 126 | cd08682, C2_Rab11-FIP_classI, C2 domain found in R | 1e-06 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 2e-06 | |
| cd08393 | 125 | cd08393, C2A_SLP-1_2, C2 domain first repeat prese | 2e-06 | |
| cd04014 | 132 | cd04014, C2_PKC_epsilon, C2 domain in Protein Kina | 2e-06 | |
| cd08406 | 136 | cd08406, C2B_Synaptotagmin-12, C2 domain second re | 2e-06 | |
| cd04018 | 151 | cd04018, C2C_Ferlin, C2 domain third repeat in Fer | 2e-06 | |
| cd08381 | 122 | cd08381, C2B_PI3K_class_II, C2 domain second repea | 3e-06 | |
| cd04018 | 151 | cd04018, C2C_Ferlin, C2 domain third repeat in Fer | 4e-06 | |
| cd04048 | 120 | cd04048, C2A_Copine, C2 domain first repeat in Cop | 5e-06 | |
| cd04025 | 123 | cd04025, C2B_RasA1_RasA4, C2 domain second repeat | 7e-06 | |
| cd04011 | 111 | cd04011, C2B_Ferlin, C2 domain second repeat in Fe | 2e-05 | |
| cd08388 | 128 | cd08388, C2A_Synaptotagmin-4-11, C2A domain first | 2e-05 | |
| cd08389 | 124 | cd08389, C2A_Synaptotagmin-14_16, C2A domain first | 3e-05 | |
| cd04010 | 148 | cd04010, C2B_RasA3, C2 domain second repeat presen | 3e-05 | |
| cd08681 | 118 | cd08681, C2_fungal_Inn1p-like, C2 domain found in | 5e-05 | |
| cd08408 | 138 | cd08408, C2B_Synaptotagmin-14_16, C2 domain second | 5e-05 | |
| cd08688 | 110 | cd08688, C2_KIAA0528-like, C2 domain found in the | 8e-05 | |
| cd08675 | 137 | cd08675, C2B_RasGAP, C2 domain second repeat of Ra | 1e-04 | |
| cd04051 | 125 | cd04051, C2_SRC2_like, C2 domain present in Soybea | 1e-04 | |
| cd08378 | 121 | cd08378, C2B_MCTP_PRT_plant, C2 domain second repe | 2e-04 | |
| cd04029 | 125 | cd04029, C2A_SLP-4_5, C2 domain first repeat prese | 2e-04 | |
| cd08409 | 137 | cd08409, C2B_Synaptotagmin-15, C2 domain second re | 5e-04 | |
| cd04052 | 111 | cd04052, C2B_Tricalbin-like, C2 domain second repe | 7e-04 | |
| PLN02952 | 599 | PLN02952, PLN02952, phosphoinositide phospholipase | 7e-04 | |
| cd04032 | 127 | cd04032, C2_Perforin, C2 domain of Perforin | 7e-04 | |
| cd08383 | 117 | cd08383, C2A_RasGAP, C2 domain (first repeat) of R | 9e-04 | |
| cd08395 | 120 | cd08395, C2C_Munc13, C2 domain third repeat in Mun | 0.001 | |
| cd04026 | 131 | cd04026, C2_PKC_alpha_gamma, C2 domain in Protein | 0.002 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 0.002 | |
| cd04049 | 124 | cd04049, C2_putative_Elicitor-responsive_gene, C2 | 0.002 | |
| cd04045 | 120 | cd04045, C2C_Tricalbin-like, C2 domain third repea | 0.002 | |
| cd08400 | 126 | cd08400, C2_Ras_p21A1, C2 domain present in RAS p2 | 0.002 | |
| cd04019 | 150 | cd04019, C2C_MCTP_PRT_plant, C2 domain third repea | 0.002 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 0.003 | |
| PLN02223 | 537 | PLN02223, PLN02223, phosphoinositide phospholipase | 0.003 | |
| cd04032 | 127 | cd04032, C2_Perforin, C2 domain of Perforin | 0.004 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 159 bits (405), Expect = 1e-41
Identities = 117/503 (23%), Positives = 204/503 (40%), Gaps = 69/503 (13%)
Query: 2 GVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVK-NPEIRPLVERDSETLQQMLPEIP 60
V S IFG+ GF S I ++ + IR LV++ E ++ L
Sbjct: 165 SVASWIFGYLGFSFA--SLFFIILVTMYVYRTCIKRVRRNIRDLVQQ--ELSEEKLEN-- 218
Query: 61 LWVKCPDYDRVDWLNKFLELMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTL 120
DY+ V+WLN FL+ WP ++ +I + + +AE IP + I+++ + TL
Sbjct: 219 ------DYESVEWLNTFLQKFWPIIEPSISQQVVDQVNQQLAEAIPSF-IDALALDEFTL 271
Query: 121 GTLPPTFQGMKVYV-TDEKELIMEPCLKWAANPN-------------------VTIGVKA 160
G+ PP G++ Y T+ ++M+ + + V G
Sbjct: 272 GSKPPRIDGIRSYPSTESDTVVMDVDFSFTPHDISDVTATSARASVNPKISLVVKKGKSF 331
Query: 161 FGLKATVQVVDLQVFAQPRITLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVG-----AD 215
+ V DL + R+ ++ L+ +P + L+E P DF L +G D
Sbjct: 332 GSFTLPILVEDLFFKGRVRVRVE-LMSKYPFIKTVSFQLLEVPEFDFILVPLGGDFFGVD 390
Query: 216 LMSIPGLYRFVQ------VANMYLWPKTLEVPILDPSKAYR-RPVGILHVKVVKAMNLKK 268
+ +IPGL RF+Q + M L P +L + I +G++ VK+ A LKK
Sbjct: 391 IFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGDSGTAIGVVEVKIKSAEGLKK 450
Query: 269 KDLL--GASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYD 326
D G DPY+ + D++ KT VK LNP WN E + + + + + L++YD
Sbjct: 451 SDSTINGTVDPYITVT-FSDRVIG-KTRVKKNTLNPVWN-ETFYILLNSFTDPLNLSLYD 507
Query: 327 WEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFK 386
+ +G + L L + P KN +N K+ G+L + + P
Sbjct: 508 FNSFKSDKVVGSTQLDLALLH-QNPVK------KNELYEFLRNTKNVGRLTYDLRFFPVI 560
Query: 387 EEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGKHHTNPYAR---ILFRGEER 443
E+ E + + E++ G+L V + E + ++ E
Sbjct: 561 EDKK-----ELKGSVEPLEDSNT--GILKVTLREVKALDELSSKKDNKSAELYTNAKEVY 613
Query: 444 KTKHVKKNRDPRWEEEFQFMLEE 466
T +K P W ++ ++ +
Sbjct: 614 STGKLKFTNHPSWNLQYNVLVTD 636
|
Length = 1227 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 4e-26
Identities = 38/83 (45%), Positives = 49/83 (59%)
Query: 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 315
L V V+ A NL KDL G SDPYVK+ + K +KKT V LNP WNE + F V P
Sbjct: 1 LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60
Query: 316 ESQAVELAVYDWEQVGKHDKMGM 338
E + + VYD+++ GK D +G
Sbjct: 61 ELAELRIEVYDYDRFGKDDFIGE 83
|
Length = 85 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 8e-26
Identities = 41/100 (41%), Positives = 54/100 (54%)
Query: 255 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD 314
L VK++ A NL KD G SDPYVK+ + D KKT V LNP WNE + F V
Sbjct: 1 TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60
Query: 315 PESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK 354
PE +E+ VYD ++ G+ D +G +PL +L K
Sbjct: 61 PELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHEK 100
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 9e-26
Identities = 42/104 (40%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
Query: 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 315
L V V++A NL KDL G SDPYVK+ + KT V LNP WNE + F V DP
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPYVKVSL--GGKQKFKTKVVKNTLNPVWNETFEFPVLDP 58
Query: 316 ESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPE-EPSVKTLDL 358
ES + + V+D ++ K D +G +PL EL + L L
Sbjct: 59 ESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 2e-20
Identities = 40/103 (38%), Positives = 55/103 (53%), Gaps = 2/103 (1%)
Query: 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 315
L V V+ A NL D G SDP+VK + +K+ KT K LNP WNE + V
Sbjct: 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKV--FKTKTIKKTLNPVWNESFEVPVPSR 58
Query: 316 ESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 358
+++ VYDW++ GK D +G + L +L PEE + TL L
Sbjct: 59 VRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPL 101
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115 |
| >gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 9e-19
Identities = 40/101 (39%), Positives = 58/101 (57%), Gaps = 5/101 (4%)
Query: 255 ILHVKVVKAMNLKKKDLLGASDPYVKLKI----TEDKLPSKKTTVKHKNLNPEWNEEYNF 310
IL VKV+ ++L KKD+ GASDPYVK+ + ++ S +T K LNP+WNEE+ F
Sbjct: 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFF 60
Query: 311 TVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEP 351
V +P + V+D ++ + D +G VPL L E P
Sbjct: 61 RV-NPREHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETP 100
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133 |
| >gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 3e-18
Identities = 40/97 (41%), Positives = 62/97 (63%), Gaps = 4/97 (4%)
Query: 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNE 306
Y G L V +++A NLKK D+ G SDPYVK+ + ++ +L KKTT+K + LNP +NE
Sbjct: 10 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNE 69
Query: 307 EYNFTVRDPESQAVEL--AVYDWEQVGKHDKMGMNVV 341
++F V + Q V L V D++++GK+D +G V+
Sbjct: 70 SFSFEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVL 106
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 4e-18
Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 5/85 (5%)
Query: 253 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTV 312
+G+L V+VV+ NL +D SDPYV L + K+ KT V KNLNP WNEE +V
Sbjct: 1 LGLLKVRVVRGTNLAVRDFTS-SDPYVVLTLGNQKV---KTRVIKKNLNPVWNEELTLSV 56
Query: 313 RDPESQAVELAVYDWEQVGKHDKMG 337
+P + ++L V+D + K D MG
Sbjct: 57 PNPMAP-LKLEVFDKDTFSKDDSMG 80
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 7e-16
Identities = 37/100 (37%), Positives = 53/100 (53%), Gaps = 6/100 (6%)
Query: 256 LHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKLPSKKTTVKHKNLNPEWNEE---YNF 310
LH +++A LK D G SDPYVKL + K +T HK NPE+NE Y
Sbjct: 17 LHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGI 76
Query: 311 TVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEE 350
T D + + + L V D ++ G +D +G +PLK+L P +
Sbjct: 77 TEEDIQRKTLRLLVLDEDRFG-NDFLGETRIPLKKLKPNQ 115
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 1e-15
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKL-PSK-KTTVKHKNLNPEWNE 306
Y L V +++ +NL D G SDP+VKL + D SK KT VK K LNPE+NE
Sbjct: 8 YNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNE 67
Query: 307 EYNFTVRDPE--SQAVELAVYDWEQVGKHD 334
E+ + ++ + + +E+ V+D + GK +
Sbjct: 68 EFFYDIKHSDLAKKTLEITVWDKDI-GKSN 96
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133 |
| >gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 2e-15
Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 3/116 (2%)
Query: 246 SKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWN 305
S +Y L +K++KA+ L KD G SDP+VK+ + DK +T VK KNLNP WN
Sbjct: 8 SVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWN 67
Query: 306 EEYNF---TVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 358
E + F + + + L V D+++ ++D +G +PL ++ E DL
Sbjct: 68 ETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDL 123
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 3e-15
Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 6/92 (6%)
Query: 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKK--TTVKHKNLNPEWNEEYNFTVR 313
L V +++A +L D+ G SDPYVK+ + DK KK T V K LNP +NE + F V
Sbjct: 18 LTVGIIQAADLPAMDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFNETFTFKVP 75
Query: 314 DPESQAVEL--AVYDWEQVGKHDKMGMNVVPL 343
E L +VYD+++ KHD +G VPL
Sbjct: 76 YSELGNKTLVFSVYDFDRFSKHDLIGEVRVPL 107
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 4e-15
Identities = 39/124 (31%), Positives = 74/124 (59%), Gaps = 6/124 (4%)
Query: 241 PILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNL 300
L S Y + +GIL+VK+++A NL+ +D G +DPY K+++ D+ +K++ + K L
Sbjct: 3 GELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTL 62
Query: 301 NPEWNEEYNFTVR--DPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 358
NPE++E + F V + + +E+ +YD++Q + + +G+ +PL E+ E LDL
Sbjct: 63 NPEFDESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEK----LDL 118
Query: 359 LKNM 362
+ +
Sbjct: 119 WRKI 122
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 4e-15
Identities = 38/129 (29%), Positives = 66/129 (51%), Gaps = 11/129 (8%)
Query: 254 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVR 313
G L VKV++A L D+ G SDP+ L++ +L +T +K LNPEWN+ + F ++
Sbjct: 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARL---QTHTIYKTLNPEWNKIFTFPIK 57
Query: 314 DPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSR 373
D +E+ VYD ++ K + +G +PL + E LK+ L +++
Sbjct: 58 DIHD-VLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGERKWYA---LKDKKLRT----RAK 109
Query: 374 GQLVVEFIY 382
G +++E
Sbjct: 110 GSILLEMDV 118
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 6e-15
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 10/98 (10%)
Query: 254 GILHVKVVKAMNLKKKDLL------GASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEE 307
G+L + V++A +L KD G SDPYV +++ K+ V +NLNP+WNE
Sbjct: 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTF---KSKVIKENLNPKWNEV 57
Query: 308 YNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKE 345
Y V + Q +E+ ++D E K D +G + L
Sbjct: 58 YEAVVDEVPGQELEIELFD-EDPDKDDFLGRLSIDLGS 94
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 2e-14
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 254 GILHVKVVKAMNLKKKDL--LGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFT 311
G+L V VV+A +L KD G SDPY L + + KT LNP+WN F
Sbjct: 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRF---KTQTIPNTLNPKWNYWCEFP 57
Query: 312 VRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKEL 346
+ ++Q ++L ++D ++ D +G + L+E+
Sbjct: 58 IFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEV 92
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 2e-14
Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 4/86 (4%)
Query: 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVR 313
L V V+KA NL D G SDPYVK+ + + KL KKT+VK LNP +NE ++F V
Sbjct: 16 LTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVP 75
Query: 314 DPESQAV--ELAVYDWEQVGKHDKMG 337
+ + V + V D + VG+++ +G
Sbjct: 76 AEQLEEVSLVITVVDKDSVGRNEVIG 101
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 3e-14
Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 10/99 (10%)
Query: 246 SKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVK--LKITEDKLPSKKTTVKHKNLNPE 303
S Y + V ++KA NLK D+ G SDPYVK L + ++ KKT +K + LNP
Sbjct: 7 SLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPV 66
Query: 304 WNEEYNFTV-----RDPESQAVELAVYDWEQVGKHDKMG 337
+NE + F + R+ + + V D +++ ++D +G
Sbjct: 67 FNESFIFNIPLERLRE---TTLIITVMDKDRLSRNDLIG 102
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 3e-14
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 315
L V++A +L KD G SDP+V++ + +T+V K+ P WNE + F + +
Sbjct: 2 LRCHVLEARDLAPKDRNGTSDPFVRVFY---NGQTLETSVVKKSCYPRWNEVFEFELMEG 58
Query: 316 ESQAVELAVYDWEQVGKHDKMGMNVVPLKEL 346
+ + V+DW+ V K+D +G V ++ L
Sbjct: 59 ADSPLSVEVWDWDLVSKNDFLGKVVFSIQTL 89
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123 |
| >gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 4e-14
Identities = 37/95 (38%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 256 LHVKVVKAMNLKKKDLLGASDPYVKLK-ITEDKLPSK-KTTVKHKNLNPEWNEEYNFTVR 313
L V+V +A NL D G SDPYVKLK I + K +K KT K LNP WNE + F ++
Sbjct: 15 LTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLK 74
Query: 314 DP-ESQAVELAVYDWEQVGKHDKMGMNVVPLKELT 347
+ + + + V+DW++ ++D MG + EL
Sbjct: 75 PADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELI 109
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 5e-14
Identities = 45/170 (26%), Positives = 65/170 (38%), Gaps = 13/170 (7%)
Query: 252 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFT 311
G L + + NL D G SDP+VKL + E + KT V K LNP WNEE+
Sbjct: 1038 NSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSV--YKTKVVKKTLNPVWNEEFTIE 1095
Query: 312 VRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEK 371
V + + + V DW+ K+D +G + L +L P + N+ L+
Sbjct: 1096 VLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTT------NSNIPLDGKTFIV 1149
Query: 372 SRGQLVVEFIYKPFKEEDLPKSFE--ESQTVQKAPENTPAGGGLLVVIVH 419
G L F ++ K E +K T G V
Sbjct: 1150 LDGTLHPGFNFRS-KYALNVSRKEGILGDIAKKV--GTGLKAGSTTVGSV 1196
|
Length = 1227 |
| >gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 8e-14
Identities = 38/97 (39%), Positives = 55/97 (56%), Gaps = 4/97 (4%)
Query: 246 SKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPE 303
S Y G L + ++KA NLK D+ G SDPYVK+ + + +L KKT+VK LNP
Sbjct: 6 SLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPT 65
Query: 304 WNEEYNFTVRDPESQAVEL--AVYDWEQVGKHDKMGM 338
+NE F V V L AV D+++VG ++ +G+
Sbjct: 66 YNEALVFDVPPENVDNVSLIIAVVDYDRVGHNELIGV 102
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 1e-13
Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 315
L + + + NL +D G SDPYVK K K K T+ +KNLNP W+E++ + D
Sbjct: 2 LDIHLKEGRNLAARDRGGTSDPYVKFKY-GGKTVYKSKTI-YKNLNPVWDEKFTLPIEDV 59
Query: 316 ESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 358
+Q + + V+D+++ D MG V L L +P+ L L
Sbjct: 60 -TQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKL 101
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121 |
| >gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 2e-13
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 11/111 (9%)
Query: 414 LVVIVHEAQDVEGKHHTN---PYARILF-----RGEERKTKHVKKNRDPRWEEEFQFMLE 465
L+V VH+ +++ ++ PY R+ + RKT K N +P ++E F+F +
Sbjct: 18 LIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVS 77
Query: 466 EPPTNDR-LHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHL 515
R L V V + S + K+ LG + I+LSD+ +K + Y L
Sbjct: 78 LEELKRRTLDVAVKNSKSFLS--REKKLLGQVLIDLSDLDLSKGFTQWYDL 126
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127 |
| >gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 66.0 bits (162), Expect = 3e-13
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 258 VKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPES 317
V VV+A NL+ KD G SDPY+K+K+ + K+ + + LNP + + + P +
Sbjct: 4 VYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIP-NTLNPVFGKMFELEATLPGN 62
Query: 318 QAVELAVYDWEQVGKHDKMGMNVVPL 343
++++V D++ +G D +G V+ L
Sbjct: 63 SILKISVMDYDLLGSDDLIGETVIDL 88
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124 |
| >gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 5e-13
Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 21/130 (16%)
Query: 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPS-----KKTTVKHKNLNPEWNEEYNF 310
L V+V++A N+ K DLL D YV+L LP+ K+T ++NP WNE + F
Sbjct: 2 LTVRVLRATNITKGDLLSTPDCYVEL-----WLPTASDEKKRTKTIKNSINPVWNETFEF 56
Query: 311 TVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNE 370
++ +EL V D E D +G + + +L E T L N
Sbjct: 57 RIQSQVKNVLELTVMD-EDYVMDDHLGTVLFDVSKLKLGEKVRVTFSL----------NP 105
Query: 371 KSRGQLVVEF 380
+ + +L VEF
Sbjct: 106 QGKEELEVEF 115
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119 |
| >gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 5e-13
Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 14/123 (11%)
Query: 255 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD 314
++ + +V+ NL D G SDPYVK ++ +K SK V K LNP+W E+++ + D
Sbjct: 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSK---VCSKTLNPQWLEQFDLHLFD 57
Query: 315 PESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRG 374
+SQ +E+ V+D + K + +G + L L E+ L+L E G
Sbjct: 58 DQSQILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELEL-----------EDGEG 106
Query: 375 QLV 377
L+
Sbjct: 107 SLL 109
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 4e-12
Identities = 31/74 (41%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 315
L V+VV A +L KD G+S YV+L K K+T K K+LNP WNE+ F V DP
Sbjct: 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQK---KRTRTKPKDLNPVWNEKLVFNVSDP 58
Query: 316 E---SQAVELAVYD 326
+ +E+ VY+
Sbjct: 59 SRLSNLVLEVYVYN 72
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 9e-12
Identities = 32/80 (40%), Positives = 41/80 (51%)
Query: 258 VKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPES 317
+++V+A NLK G SDPYV L T K KT + LNP W+EE+ V E
Sbjct: 5 IRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEP 64
Query: 318 QAVELAVYDWEQVGKHDKMG 337
+ V+D VGKHD G
Sbjct: 65 LWISATVWDRSFVGKHDLCG 84
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 1e-11
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 414 LVVIVHEAQD---VEGKHHTNPYARILFRGEE---RKTKHVKKNRDPRWEEEFQFMLEEP 467
L V V A++ + ++PY ++ G++ +KTK VK +P W E F F + P
Sbjct: 1 LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60
Query: 468 PTNDRLHVEV 477
L +EV
Sbjct: 61 EL-AELRIEV 69
|
Length = 85 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 1e-11
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 9/107 (8%)
Query: 414 LVVIVHEAQDVEGKH---HTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPT 469
L V V EA+++ K ++PY ++ G++ KTK VK +P W E F+F + +P
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPE- 59
Query: 470 NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLI 516
+D L VEV + LG ++I LS+++ + + E + +
Sbjct: 60 SDTLTVEVWDKDR----FSKDDFLGEVEIPLSELLDSGKEGELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 2e-11
Identities = 35/96 (36%), Positives = 55/96 (57%), Gaps = 4/96 (4%)
Query: 246 SKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKLPSKKTTVKHKNLNPE 303
S Y+ L V V+KA +L K D+ G +DPYVK+ + + ++ KKT VK LNP
Sbjct: 7 SLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPV 66
Query: 304 WNEEYNFTVRDPESQ--AVELAVYDWEQVGKHDKMG 337
+NE + F + E + +VE V D ++V K++ +G
Sbjct: 67 FNESFVFDIPSEELEDISVEFLVLDSDRVTKNEVIG 102
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176012 cd04047, C2B_Copine, C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 2e-11
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 14/106 (13%)
Query: 261 VKAMNLKKKDLLGASDPYVKL-KITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVR---- 313
L KKD G SDP++++ + +ED + +T V LNP W FT+
Sbjct: 7 FSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWKP---FTIPLQKL 63
Query: 314 ---DPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTL 356
D + +++ VYD++ GKHD +G L EL P L
Sbjct: 64 CNGDYDRP-IKIEVYDYDSSGKHDLIGEFETTLDELLKSSPLEFEL 108
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 110 |
| >gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 3e-11
Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 34/136 (25%)
Query: 242 ILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKI-------TEDKLPSKK-- 292
+L+ + P+ +L V V++A L KD+ G SDPY L I +K +K
Sbjct: 16 LLERVREAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSH 75
Query: 293 -----------------TTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDK 335
T VK + LNP WNE + F V D + + L ++D HD
Sbjct: 76 RKKAVLKDTVPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWD------HDD 129
Query: 336 --MGMNVVPLKELTPE 349
+G +PLK+L
Sbjct: 130 DFLGCVNIPLKDLPSC 145
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153 |
| >gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 7e-11
Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 10/128 (7%)
Query: 252 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFT 311
P + V V A L K+D G +DPYV +K + + ++ V+ L+PE++ + F
Sbjct: 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESV---RSPVQKDTLSPEFDTQAIFY 57
Query: 312 VRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEK 371
+ P S QV + + + L+ + +TL L +
Sbjct: 58 RKKPRSPIK-------IQVWNSNLLCDEFLGQATLSADPNDSQTLRTLPLRKRGRDAAGE 110
Query: 372 SRGQLVVE 379
G + V+
Sbjct: 111 VPGTISVK 118
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 1e-10
Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 8/97 (8%)
Query: 255 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD 314
+L V + A NL PYV+L + + ++K+ VK + NP W E + F VR+
Sbjct: 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKT---TQKSKVKERTNNPVWEEGFTFLVRN 57
Query: 315 PESQAVELAVYDWEQVGKHDK-MGMNVVPLKELTPEE 350
PE+Q +E+ V D K K +G +PL EL E
Sbjct: 58 PENQELEIEVKD----DKTGKSLGSLTLPLSELLKEP 90
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105 |
| >gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 1e-10
Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Query: 256 LHVKVVKAMNLKKKDLLGA-SDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD 314
L V ++KA NL + A DP+VK+ + D+ S ++ VK K NP ++E + F V
Sbjct: 16 LTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSF 75
Query: 315 PESQA--VELAVYDWEQVGKHDKMGMNVVPLKELTP 348
E Q + L+VYD ++ +H +G + PLK+L
Sbjct: 76 KELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDL 111
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 2e-10
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 432 PYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPP-TNDRLHVEVCSVSSRIGLLHPK 490
A++ FRG ++KT+ ++ +P W E F++ L P ++ L + V ++G
Sbjct: 17 RIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDY-EKVG---RN 72
Query: 491 ETLGYIDINLSDVVSNKRINEKYHLIDSKN 520
+G ++L D+VS + L+DS
Sbjct: 73 RLIGSATVSLQDLVSEGLLEVTEPLLDSNG 102
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 3e-10
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 11/103 (10%)
Query: 413 LLVVIVHEAQDVEGK---HHTNPYARILFRGEE---RKTKHVKKNRDPRWEEEFQFMLEE 466
L V + A+++ K ++PY ++ G+ +KTK VK +P W E F+F +
Sbjct: 1 TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEV-P 59
Query: 467 PPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRI 509
PP L +EV + +G + I LSD++ R
Sbjct: 60 PPELAELEIEVYDKDR----FGRDDFIGQVTIPLSDLLLGGRH 98
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 3e-10
Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 17/107 (15%)
Query: 256 LHVKVVKAMNLKKKDLLGASDPYVKLK-ITEDKLPSKKTTVKHKNLNPEWNEEYNFTVR- 313
L V+V++ +L K G DP+ ++ K +K+T VK K NP ++E + F +
Sbjct: 1 LSVRVLECRDLALKSN-GTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTI 59
Query: 314 --------------DPESQAVELAVYDWEQVGKHDKMGMNVVPLKEL 346
D E + + ++ V D +G +PL+ L
Sbjct: 60 GFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGL 106
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137 |
| >gnl|CDD|176028 cd08382, C2_Smurf-like, C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 4e-10
Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 8/127 (6%)
Query: 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 315
+ + V+ A L K+DL DP+ + + D + T V K L+P+WNE ++ TV
Sbjct: 2 VRLTVLCADGLAKRDLFRLPDPFAVITV--DGGQTHSTDVAKKTLDPKWNEHFDLTVGP- 58
Query: 316 ESQAVELAVYDWEQVGKHDK--MGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSR 373
S + + V+D ++ K D+ +G + + P + + L+ L N R
Sbjct: 59 -SSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLR--KLKKSDNLSVR 115
Query: 374 GQLVVEF 380
G++VV
Sbjct: 116 GKIVVSL 122
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have type-II topology. Length = 123 |
| >gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 4e-10
Identities = 33/98 (33%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Query: 255 ILHVKVVKAMNLKKKDLLGAS--DPYVKLKIT---EDKLPSKKTTVKHKN-LNPEWNEEY 308
L +K++ L K S DPYV+++I D KT V N NP WNE +
Sbjct: 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETF 62
Query: 309 NFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKEL 346
F V PE + VYD + G D +G +PL L
Sbjct: 63 EFDVTVPELAFLRFVVYDED-SGDDDFLGQACLPLDSL 99
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128 |
| >gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 6e-10
Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 15/128 (11%)
Query: 260 VVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVR---DPE 316
VV NL L G D K+ K KKT V LNP WNE + + + DP+
Sbjct: 2 VVSLKNLPG--LKGKGDRIAKVTFRGVK---KKTRVLENELNPVWNETFEWPLAGSPDPD 56
Query: 317 SQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQL 376
+E+ V D+E+VG++ +G V L++L V L L D + +
Sbjct: 57 ES-LEIVVKDYEKVGRNRLIGSATVSLQDL------VSEGLLEVTEPLLDSNGRPTGATI 109
Query: 377 VVEFIYKP 384
+E Y+P
Sbjct: 110 SLEVSYQP 117
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 8e-10
Identities = 38/127 (29%), Positives = 57/127 (44%), Gaps = 14/127 (11%)
Query: 253 VGILHVKVVKAMNLKKKDLLGAS-DPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFT 311
+G+L V + A LK D++G + DPYV I+ + +T VK NP WNE
Sbjct: 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRE-LARTKVKKDTSNPVWNETKYIL 59
Query: 312 VRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK--TLDLLKNMDLNDGQN 369
V ++ + L VYD+ K +G L L + P + T +LL+ N
Sbjct: 60 VNS-LTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLL-QNPEQENLTKNLLR--------N 109
Query: 370 EKSRGQL 376
K G+L
Sbjct: 110 GKPVGEL 116
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 4e-09
Identities = 36/132 (27%), Positives = 65/132 (49%), Gaps = 25/132 (18%)
Query: 412 GLLVVIVHEAQDVEGKHH---------TNPYARILFRGEERKTKHVKKNRDPRWEEEFQF 462
G+L + V EAQD+ K ++PY + + K+K +K+N +P+W E ++
Sbjct: 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEA 60
Query: 463 MLEEPPTNDRLHVEVCSVSSRIGLLHPKET-----LGYIDINLSDVVSNKRINEKYHLID 517
+++E P + L +E L ++ LG + I+L V I+E L D
Sbjct: 61 VVDEVPGQE-LEIE----------LFDEDPDKDDFLGRLSIDLGSVEKKGFIDEWLPLED 109
Query: 518 SKNGRIQIELQW 529
K+GR+ ++L+W
Sbjct: 110 VKSGRLHLKLEW 121
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 4e-09
Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
Query: 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKL--PSKKTTVKHKNLNPEWNE--EYNFT 311
L V V K NL D DPYV+L + DK +KT+VK NLNP ++E E+ +
Sbjct: 18 LIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVS 77
Query: 312 VRDPESQAVELAVYDWEQVGKHDK--MGMNVVPLKELTPEEPSVKTLDL 358
+ + + + +++AV + + +K +G ++ L +L + + DL
Sbjct: 78 LEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127 |
| >gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 1e-08
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 254 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPS--KKTTVKHKNLNPEWNE--EYN 309
G LHV V +A NL G SD +VK + DK +KT V K++NP WN Y+
Sbjct: 27 GELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYD 86
Query: 310 -FTVRDPESQAVELAVYDWEQVGKHDKMG 337
+ D +EL V+D +++ +D +G
Sbjct: 87 GVSPEDLSQACLELTVWDHDKLSSNDFLG 115
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162 |
| >gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 2e-08
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 315
+ + VV A L KD G SDPYV +++ + K K+T +NLNP WNE+++F +
Sbjct: 3 ISITVVCAQGLIAKDKTGTSDPYVTVQVGKTK---KRTKTIPQNLNPVWNEKFHFECHN- 58
Query: 316 ESQAVELAVYD 326
S +++ V+D
Sbjct: 59 SSDRIKVRVWD 69
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127 |
| >gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 3e-08
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 8/106 (7%)
Query: 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED----KLPSKKTTVKHKNLNPEW 304
YR L V+++ A NL D G+SDP+VK+++ +P+ KT VK K L P +
Sbjct: 11 YRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLF 70
Query: 305 NEEYNFTVRDPESQA----VELAVYDWEQVGKHDKMGMNVVPLKEL 346
+E + F V + + V D++ +G +D G +PL ++
Sbjct: 71 DESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDI 116
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133 |
| >gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 3e-08
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 13/105 (12%)
Query: 248 AYRRPVGILHVKVVKAMNL-----KKKDLLGASDPYVKLKITEDKLPS--KKTTVKHKNL 300
+Y G L V + + NL KKK S+PYVK+ + DK +KT+VK
Sbjct: 8 SYNYKTGSLEVHIKECRNLAYADEKKK----RSNPYVKVYLLPDKSKQSKRKTSVKKNTT 63
Query: 301 NPEWNEE--YNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPL 343
NP +NE Y+ + E++ ++L+V+ ++ G++ +G +PL
Sbjct: 64 NPVFNETLKYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPL 108
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 4e-08
Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 315
L + V A LK DPYV+ +T D P KKT V K NP+WNE FTV
Sbjct: 4 LQITVESA-KLKSNSKSFKPDPYVE--VTVDGQPPKKTEVSKKTSNPKWNEH--FTVLVT 58
Query: 316 ESQAVELAVYD 326
+E V+
Sbjct: 59 PQSTLEFKVWS 69
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 5e-08
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Query: 253 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTV 312
+G L V +V+ +LK + G SDPY ++ + KT V LNP+WN F V
Sbjct: 14 IGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQ---EHKTKVVSDTLNPKWNSSMQFFV 70
Query: 313 RDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEE-----PSVKTLDL 358
+D E + + V+D + D +G + + ++ E P K L L
Sbjct: 71 KDLEQDVLCITVFDRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLL 121
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 1e-07
Identities = 26/111 (23%), Positives = 52/111 (46%), Gaps = 13/111 (11%)
Query: 413 LLVVIVHEAQD---VEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPT 469
LL V + A++ + +PY + +K+K ++ +P WEE F F L P
Sbjct: 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTF-LVRNPE 59
Query: 470 NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVS--NKRINEKYHLIDS 518
N L +EV + ++LG + + LS+++ + +++ + L +S
Sbjct: 60 NQELEIEVKDDKT-------GKSLGSLTLPLSELLKEPDLTLDQPFPLDNS 103
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105 |
| >gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 1e-07
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 315
L++++V+ NL KD+ G+SDPY +K+ D +T K LNP W EEY TV P
Sbjct: 2 LYIRIVEGKNLPAKDITGSSDPYCIVKV--DNEVIIRTATVWKTLNPFWGEEY--TVHLP 57
Query: 316 ES-QAVELAVYDWEQVGKHDKMG 337
V V D + + + D +G
Sbjct: 58 PGFHTVSFYVLDEDTLSRDDVIG 80
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121 |
| >gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 1e-07
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 254 GILHVKVVKAMNLKKKDL-LGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTV 312
G+L V + +A +L K D G+SDPYV + P T + K+LNP W E + V
Sbjct: 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLV 60
Query: 313 RDPESQAVE---LAVYDWEQVGKHDKMGMNVVPLKEL 346
E +A E ++D ++ D++G + LKEL
Sbjct: 61 TPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKEL 97
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111 |
| >gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 1e-07
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 431 NPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 489
+PYA + G+ T+ KK +P W +F++ + R+ V V R
Sbjct: 14 SPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDR-RKSRVTVVV--KDDR---DRH 67
Query: 490 KETLGYIDINLSDVVSNKRINEKYH-LIDSKNGRIQIELQWR 530
LG + I+L+D++ + +++ L + GRI+I W+
Sbjct: 68 DPVLGSVSISLNDLIDATSVGQQWFPLSGNGQGRIRISALWK 109
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-07
Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Query: 254 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTV-KHKNLNPEWNEEYNFTV 312
G L V ++ A L+ D LG DPYV I + + +K+ V K NPEWNE++ FTV
Sbjct: 1 GTLEVLLISAKGLQDTDFLGKIDPYV---IIQCRTQERKSKVAKGDGRNPEWNEKFKFTV 57
Query: 313 RDPESQAV---ELAVYDWEQVGKHDKMGMNVVPLKEL 346
P L + D + D +G + LK L
Sbjct: 58 EYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGL 94
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124 |
| >gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 2e-07
Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLK-ITEDKL-PSKKTTVKHKNLNPEWNE 306
Y G L+V +++A L + D+ SDP+VK++ + KL +KKT+ ++P +NE
Sbjct: 9 YLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNE 68
Query: 307 EYNFTVRDPESQAVEL--AVYDWEQVGKHDKMGMNVV 341
++F V E + V L VY +D +G V+
Sbjct: 69 SFSFKVPQEELENVSLVFTVYGHNVKSSNDFIGRIVI 105
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 3e-07
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 18/128 (14%)
Query: 412 GLLVVIVHEA----QDVEGKHHTNPYARI-LFRGEERKTKHVKKNRDPRWEEEFQFMLEE 466
G L V + Q + TN + ++ L G R+TK V + P W+E F + +
Sbjct: 1980 GSLTVTIKRGNNLKQSMGN---TNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDS 2036
Query: 467 PPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLID--SKNG--- 521
PP +LH+ C + G K +LG + I + VV + +Y L +K+G
Sbjct: 2037 PPKGQKLHI-SCKSKNTFG----KSSLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSR 2091
Query: 522 RIQIELQW 529
++IE QW
Sbjct: 2092 TLEIEFQW 2099
|
Length = 2102 |
| >gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 3e-07
Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKK--TTVKHKNLNPEWNE 306
Y + L V V++A +L +D +PYVK+ + D+ K T K LNPEWN+
Sbjct: 11 YDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQ 70
Query: 307 --EY-NFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPL 343
EY N + + +E+ V+D+++ G++D +G V+ L
Sbjct: 71 TFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDL 110
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125 |
| >gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 3e-07
Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 15/121 (12%)
Query: 254 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVR 313
G+L + + KA +LK + +G DPYV ++ + + +T LNP W+E V
Sbjct: 1 GVLRLHIRKANDLKNLEGVGKIDPYV--RVLVNGIVKGRTVTISNTLNPVWDEVLYVPVT 58
Query: 314 DPESQAVELAVYDWEQVGKHDKMGMNVVPLKEL------------TPEEPSVKTLDLLKN 361
P +Q + L V D+E+VGK +G + + +L EE +K L LK
Sbjct: 59 SP-NQKITLEVMDYEKVGKDRSLGSVEINVSDLIKKNEDGKYVEYDDEEERLKRLLSLKG 117
Query: 362 M 362
+
Sbjct: 118 V 118
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120 |
| >gnl|CDD|176060 cd08678, C2_C21orf25-like, C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 4e-07
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 10/128 (7%)
Query: 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSK-KTTVKHKNLNPEWNEEYNFTVRD 314
L VK +KA L + G+S+PY L++ D+ P K +++ + NP W+E + F +
Sbjct: 1 LLVKNIKANGLSEA--AGSSNPYCVLEM--DEPPQKYQSSTQKNTSNPFWDEHFLFEL-S 55
Query: 315 PESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRG 374
P S+ + VYD + +G+ +VP EL + L + + G
Sbjct: 56 PNSKELLFEVYDNGKKSDSKFLGLAIVPFDELRKNPSGRQIFPLQG----RPYEGDSVSG 111
Query: 375 QLVVEFIY 382
+ VEF++
Sbjct: 112 SITVEFLF 119
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 4e-07
Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 14/117 (11%)
Query: 415 VVIVHEAQD--VEGKHHTN-PYARILFRGEERKTKHVKKNRDPRWEEEFQF----MLEEP 467
V V +A+ +GK TN Y I E+ T +K P W+EE F +L
Sbjct: 2 QVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGN 61
Query: 468 PTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDV--VSNKRINEKYHLIDSKNGR 522
L + V + LL + LG + I L+D+ +R + L +SK G+
Sbjct: 62 GNRATLQLTVMHRN----LLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKL-ESKPGK 113
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 5e-07
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 13/130 (10%)
Query: 254 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHK-NLNPEWNEEYNFTV 312
G L V V+KA NL K L DPY L+I +KKT + +PEW+EE F +
Sbjct: 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGG---VTKKTKTDFRGGQHPEWDEELRFEI 57
Query: 313 RDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKS 372
+ + +++AV+D + K D +G V L E +L +
Sbjct: 58 TEDKKPILKVAVFD-DDKRKPDLIGDTEVDLSPALKEGEFDDWYEL--------TLKGRY 108
Query: 373 RGQLVVEFIY 382
G++ +E +
Sbjct: 109 AGEVYLELTF 118
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118 |
| >gnl|CDD|176004 cd04039, C2_PSD, C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 5e-07
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 292 KTTVKHKNLNPEWNEEYNFTVRDPESQ-AVELAVYDWEQVGKHDKMGMNVVPLKELTPEE 350
+T+ + LNP +NE F V E ++ V D ++ +D + + ++EL
Sbjct: 40 RTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFSFNDYVATGSLSVQELLNAA 99
Query: 351 PSVK 354
P
Sbjct: 100 PQPD 103
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 108 |
| >gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-06
Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 14/131 (10%)
Query: 257 HVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFT----- 311
V V++A L K G +D YV +++ ++K T+VK K +P W EE +F
Sbjct: 2 QVTVLQARGLLCKGKSGTNDAYVIIQLGKEKY---STSVKEKTTSPVWKEECSFELPGLL 58
Query: 312 VRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTP--EEPSVKTLDLLKNMDLNDGQN 369
+ ++L V +G +G +PL +L + L + G++
Sbjct: 59 SGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKL----ESKPGKD 114
Query: 370 EKSRGQLVVEF 380
+K RG++ V+
Sbjct: 115 DKERGEIEVDI 125
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 2e-06
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 414 LVVIVHEAQDV---EGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTN 470
LVV V +AQD+ +G+ ++ Y + F G++++T+ K+ +P W E+ F + +P
Sbjct: 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRL 61
Query: 471 DRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVS 505
L +EV V + + LG + I+ + V
Sbjct: 62 SNLVLEV-YVYNDRRSGRRRSFLGRVRISGTSFVP 95
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176039 cd08393, C2A_SLP-1_2, C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-06
Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 256 LHVKVVKAMNLKKKDL-LGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTV 312
LHV V++ +L D SDPYVK + DK +KT+VK K LNP +NE + V
Sbjct: 17 LHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKV 76
Query: 313 RDPESQAVELAVYDWEQVGKHDKMGMNV 340
E L + W D +G N
Sbjct: 77 EREELPTRVLNLSVWH----RDSLGRNS 100
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|175981 cd04014, C2_PKC_epsilon, C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-06
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 20/85 (23%)
Query: 254 GILHVKVVKAMNLK-------------KKDLLGASDPYVKLKITEDKLPSKKTTVKHKNL 300
G L +K+ +A++LK LL DPYV + + + + KT+ K K
Sbjct: 4 GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLL---DPYVSIDVDDTHI--GKTSTKPKTN 58
Query: 301 NPEWNEEYNFTVRDPESQAVELAVY 325
+P WNEE FT + +EL V+
Sbjct: 59 SPVWNEE--FTTEVHNGRNLELTVF 81
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 132 |
| >gnl|CDD|176051 cd08406, C2B_Synaptotagmin-12, C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-06
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVR 313
L V VVKA NL + +DP+VK+ + +D K+ KKT+VK + NP +NE F+V
Sbjct: 17 LTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVP 76
Query: 314 DPESQAVELAV 324
Q + L V
Sbjct: 77 AIVLQDLSLRV 87
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-06
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 7/77 (9%)
Query: 268 KKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE-SQAVELAVYD 326
KK+L+ DPYV++ K+ KT+VK + NPEWNE+ F P + +++ + D
Sbjct: 31 KKELV---DPYVEVSFAGQKV---KTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQIRD 84
Query: 327 WEQVGKHDKMGMNVVPL 343
W++VG D +G + + L
Sbjct: 85 WDRVGNDDVIGTHFIDL 101
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151 |
| >gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 3e-06
Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 8/111 (7%)
Query: 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNE 306
Y+ G L V V+ A NL D DPYVK + D K +KT V K NP +NE
Sbjct: 10 YKN--GTLFVMVMHAKNLPLLDG-SDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNE 66
Query: 307 E--YN-FTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK 354
Y+ V D + + ++++V+ + + +++ +G +PLK+L + + K
Sbjct: 67 MLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEK 117
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122 |
| >gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 4e-06
Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 17/98 (17%)
Query: 380 FIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGKHHTNPYARILFR 439
FI+K ++ EDLP+ ++ + + E +++ +PY + F
Sbjct: 2 FIFKIYRAEDLPQM------------DSGIMANVKKAFLGEKKEL-----VDPYVEVSFA 44
Query: 440 GEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEV 477
G++ KT K + +P W E+ F PP +R+ +++
Sbjct: 45 GQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQI 82
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151 |
| >gnl|CDD|176013 cd04048, C2A_Copine, C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 5e-06
Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 26/126 (20%)
Query: 261 VKAMNLKKKDLLGASDPYVKLKITEDKLPSKK------TTVKHKNLNPEWNE----EYNF 310
+ NL KD+L SDP+V + + S + T V NLNP++ +Y F
Sbjct: 7 ISCRNLLDKDVLSKSDPFVVVYVKTG--GSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYF 64
Query: 311 TVRDPESQAVELAVYD----WEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLND 366
E Q + VYD + + HD +G L E+ V + + L
Sbjct: 65 ----EEVQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEI------VSSPGQKLTLPLKG 114
Query: 367 GQNEKS 372
G+ + +
Sbjct: 115 GKGKGT 120
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 120 |
| >gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 7e-06
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 418 VHEAQDVEGKHH---TNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLH 474
V EA+D+ K ++P+ R+ + G+ +T VKK+ PRW E F+F L E + L
Sbjct: 6 VLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGA-DSPLS 64
Query: 475 VEV 477
VEV
Sbjct: 65 VEV 67
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123 |
| >gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 2e-05
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 13/86 (15%)
Query: 257 HVKVVKAMNLKKKDLLGA-SDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 315
V+V++A + L+G DP VK+++ K K T+VK P +NE + F +
Sbjct: 7 RVRVIEA-----RQLVGGNIDPVVKVEVGGQK---KYTSVKKGTNCPFYNEYFFFNFHES 58
Query: 316 ES----QAVELAVYDWEQVGKHDKMG 337
+ ++++VYD + +G
Sbjct: 59 PDELFDKIIKISVYDSRSLRSDTLIG 84
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-05
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 256 LHVKVVKAMNLKKKDL-LGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNF 310
L V +++ +L D G SDPYVKL++ +K KT V K NP ++E + F
Sbjct: 18 LLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTF 73
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|176035 cd08389, C2A_Synaptotagmin-14_16, C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 3e-05
Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 12/115 (10%)
Query: 243 LDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSK----KTTVKHK 298
LD + Y L V V++A ++ KD GAS V L + LPSK KT V+
Sbjct: 5 LDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVL----LPSKKQRAKTKVQRG 60
Query: 299 NLNPEWNEEYNFTVRDPE---SQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEE 350
NP +NE + F+ +PE + A+ +Y E++ K +G VVPL +L E
Sbjct: 61 P-NPVFNETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEG 114
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|175977 cd04010, C2B_RasA3, C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-05
Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 12/102 (11%)
Query: 256 LHVKVVKAMNLKKKDLLGASDPY--VKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVR 313
L V+V++ +L K+ G DPY V L + K +K+T VK K NP+++E + F V
Sbjct: 2 LSVRVIECSDLALKN--GTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVT 59
Query: 314 DPESQAVELAVYDWEQVGK--------HDKMGMNVVPLKELT 347
S + E K H MG V L E+
Sbjct: 60 IDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLGEVR 101
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 148 |
| >gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 5e-05
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 16/125 (12%)
Query: 412 GLLVVIVHEAQDVEGKHH---TNPYARILFRGEERKTKHVKK-NRDPRWEEEFQFML--E 465
G LVV+V +A+++ K +PY + G +KTK + + P W+EE +F + +
Sbjct: 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITED 60
Query: 466 EPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHL-IDSKN-GRI 523
+ P L V V R L +G +++LS + ++ Y L + + G +
Sbjct: 61 KKPI---LKVAVFDDDKRKPDL-----IGDTEVDLSPALKEGEFDDWYELTLKGRYAGEV 112
Query: 524 QIELQ 528
+EL
Sbjct: 113 YLELT 117
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118 |
| >gnl|CDD|176053 cd08408, C2B_Synaptotagmin-14_16, C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 5e-05
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 240 VPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKLPSK-KTTVK 296
VP L Y G L V+V+K N K + A D YVKL + ++ + SK KT+++
Sbjct: 1 VPELLLGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIR 60
Query: 297 HKNLNPEWNEEYNFTVRDPESQAVEL--AVYDWEQVGKHDKMG 337
+PE+ E + F V + V L +VY+ ++ + + +G
Sbjct: 61 RGQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRKMKRKEMIG 103
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 138 |
| >gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 8e-05
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Query: 256 LHVKVVKAMNLKKKD-LLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWN-EEYNFTVR 313
L V+VV A +L D +D +V++K + KT V K+LNP WN E + F V
Sbjct: 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGST---TYKTDVVKKSLNPVWNSEWFRFEVD 57
Query: 314 DPESQ--AVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPS 352
D E Q +++ V D + +D +G + L L ++
Sbjct: 58 DEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSV 98
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110 |
| >gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 1e-04
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 414 LVVIVHEAQDVEGKHH--TNPYARI----LFRGEERKTKHVKKNRDPRWEEEFQFMLEEP 467
L V V E +D+ K + +P+AR+ + + ++TK KK +PR++E F F L
Sbjct: 1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIG 60
Query: 468 PTNDRLHVEVCS 479
+ ++ +V
Sbjct: 61 FSYEKKSFKVEE 72
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137 |
| >gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 1e-04
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 9/98 (9%)
Query: 255 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTV-KHKNLNPEWNEEYNFTVR 313
L + ++ A +LK +L G Y + I D + T V + NP WNE F +
Sbjct: 1 TLEITIISAEDLKNVNLFGKMKVYAVVWI--DPSHKQSTPVDRDGGTNPTWNETLRFPLD 58
Query: 314 DPESQ----AVELAVYDWEQVGKHDK-MGMNVVPLKEL 346
+ Q A+ + VY E+ DK +G VPLK+L
Sbjct: 59 ERLLQQGRLALTIEVYC-ERPSLGDKLIGEVRVPLKDL 95
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125 |
| >gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 2e-04
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 315
L+V+VVKA L ++DP V++K+ K +K + NPEWN+ + F+
Sbjct: 2 LYVRVVKARGLP----ANSNDPVVEVKLGNYKGSTKAIE---RTSNPEWNQVFAFSKDRL 54
Query: 316 ESQAVELAVYD 326
+ +E++V+D
Sbjct: 55 QGSTLEVSVWD 65
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121 |
| >gnl|CDD|175995 cd04029, C2A_SLP-4_5, C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 2e-04
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 9/105 (8%)
Query: 246 SKAYRRPVGILHVKVVKAMNLKKKD-LLGASDPYVKLKITEDKLPS--KKTTVKHKNLNP 302
S +Y L+V V + NL D S+PYVK + DK +KT++K NP
Sbjct: 7 SLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNP 66
Query: 303 EWNEEYNFTVRDPESQ----AVELAVYDWEQVGKHDKMGMNVVPL 343
+NE +++ SQ ++L+V+ +++ G++ +G +PL
Sbjct: 67 VYNETLKYSI--SHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPL 109
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|176054 cd08409, C2B_Synaptotagmin-15, C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 5e-04
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 256 LHVKVVKAMNLKKKDLLGASDPYVK--LKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVR 313
L V V++A L++ D + YVK L I + +KKT V +P +NE ++F V
Sbjct: 17 LTVVVLRARGLRQLDH-AHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVT 75
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 137 |
| >gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 7e-04
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 5/81 (6%)
Query: 267 KKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYD 326
+ G PY +L + + T VK K NP WN F V D V + V D
Sbjct: 5 TSESKTGLLSPYAELYLNGKLV--YTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKD 62
Query: 327 WEQVGKHDK-MGMNVVPLKEL 346
+HD +G + L +L
Sbjct: 63 --DRDRHDPVLGSVSISLNDL 81
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|178538 PLN02952, PLN02952, phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 7e-04
Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 10/93 (10%)
Query: 291 KKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEE 350
KKT + N P WNEE++F + PE + + V +++ K D G +P+ EL P
Sbjct: 515 KKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVREYDMSEKDDFGGQTCLPVSELRPG- 573
Query: 351 PSVKTLDLLKNMDLNDGQNEKSRG-QLVVEFIY 382
++++ L+D + EK + +L++ FI+
Sbjct: 574 --------IRSVPLHDKKGEKLKNVRLLMRFIF 598
|
Length = 599 |
| >gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 7e-04
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 250 RRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYN 309
RR + L V V++A L D ++D YVK+ K+T V N NP WN ++
Sbjct: 24 RRGLATLTVTVLRATGLWG-DYFTSTDGYVKVF---FGGQEKRTEVIWNNNNPRWNATFD 79
Query: 310 F-TVRDPESQAVELAVYD 326
F +V + V+D
Sbjct: 80 FGSVELSPGGKLRFEVWD 97
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127 |
| >gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 9e-04
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 315
L +++++A NL K G DPY + + + ++ +T K LNP W EE+ F P
Sbjct: 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEV--ARTKTVEK-LNPFWGEEFVFDDPPP 55
Query: 316 ESQAVELAVYDWEQVGKHDKMGMNVVPLKELT 347
+ L+ Y+ ++ K + + V L +L
Sbjct: 56 DVTFFTLSFYNKDKRSKDRDIVIGKVALSKLD 87
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117 |
| >gnl|CDD|176041 cd08395, C2C_Munc13, C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.001
Identities = 32/117 (27%), Positives = 60/117 (51%), Gaps = 10/117 (8%)
Query: 258 VKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKK----TTVKHKNLNPEWNEEYNFTV- 312
VKVV A +LK + G P+V++ + L KK T K+ N +P++NE + F +
Sbjct: 4 VKVVAANDLKWQTT-GMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILG 62
Query: 313 --RDPESQAVELAVYDWEQVGKHDKM-GMNVVPLKELTPEEPSVKTLDLLKNMDLND 366
DPES + + V D+ + D++ G+ V+ L+++ L L + + +++
Sbjct: 63 NEDDPESYELHICVKDY-CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRRIHMDE 118
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins.C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120 |
| >gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.002
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 12/77 (15%)
Query: 411 GGLLVVIVHEAQ-----DVEGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEF 460
L V V EA+ D G ++PY ++ ++KTK +KK +P W E F
Sbjct: 12 DNKLTVEVREAKNLIPMDPNG--LSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETF 69
Query: 461 QFMLEEPPTNDRLHVEV 477
F L+ + RL +EV
Sbjct: 70 TFDLKPADKDRRLSIEV 86
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.002
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 12/100 (12%)
Query: 409 AGGGLLVVIVHEAQDVE-----GKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFM 463
+G G L+V++ E +D++ GK +PY + +E KTK V +P+W QF
Sbjct: 12 SGIGRLMVVIVEGRDLKPCNSNGKS--DPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFF 69
Query: 464 LEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDV 503
+++ V +V R P + LG +I ++D+
Sbjct: 70 VKDL----EQDVLCITVFDR-DFFSPDDFLGRTEIRVADI 104
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.002
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 11/71 (15%)
Query: 411 GGLLVVIVHEAQDVEGKHHTN------PYARILFRGEERKTKHVK-KNRDPRWEEEFQFM 463
G L V+++ +G T+ PY I R +ERK+K K R+P W E+F+F
Sbjct: 1 GTLEVLLIS----AKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFT 56
Query: 464 LEEPPTNDRLH 474
+E P
Sbjct: 57 VEYPGWGGDTK 67
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124 |
| >gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.002
Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 13/121 (10%)
Query: 412 GLLVVIVHEAQDVEGKHHT---NPYARILFRGEER-KTKHVKKNRDPRWEEEFQFMLEEP 467
G+L + + +A D++ +PY R+L G + +T + +P W+E + P
Sbjct: 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP 60
Query: 468 PTNDRLHVEVCSVSSRIGLLHPKE-TLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIE 526
N ++ +EV +G K+ +LG ++IN+SD++ K + KY D + R++
Sbjct: 61 --NQKITLEVMDYEK-VG----KDRSLGSVEINVSDLI-KKNEDGKYVEYDDEEERLKRL 112
Query: 527 L 527
L
Sbjct: 113 L 113
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120 |
| >gnl|CDD|176045 cd08400, C2_Ras_p21A1, C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.002
Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 9/105 (8%)
Query: 414 LVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEE-PPTNDR 472
L + V EA + KH +PY I + V++ +P W EE F+ ++ PP +
Sbjct: 6 LQLNVLEAHKLPVKHVPHPYCVISLNEVKVARTKVREGPNPVWSEE--FVFDDLPPDVNS 63
Query: 473 LHVEVCSVSSRIGLLHPKET-LGYIDINLSDVVSNKRINEKYHLI 516
+ + + + R K++ + + + LS + + + +E Y L
Sbjct: 64 FTISLSNKAKR-----SKDSEIAEVTVQLSKLQNGQETDEWYPLS 103
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 126 |
| >gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.002
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 315
L V V++A +L D + +VK ++ L ++ + +N NP WNEE F +P
Sbjct: 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTR--PSQTRNGNPSWNEELMFVAAEP 59
Query: 316 ESQAVELAVYDWEQVGKHDKMGMNVVPLKELTP 348
+ L+V D K + +G V+PL ++
Sbjct: 60 FEDHLILSVEDRVGPNKDEPLGRAVIPLNDIER 92
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 248 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEE 307
Y P+G + V V KA +L+ + G SDPY + + L +T LNP WNE
Sbjct: 705 VYDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVN--NLVKYRTIYGSSTLNPIWNEI 762
Query: 308 YNFTVRDPESQAVELAVYDWEQVGK 332
V +Q + L D+E+ G
Sbjct: 763 LYVPVTSK-NQRLTLECMDYEESGD 786
|
Length = 1227 |
| >gnl|CDD|165867 PLN02223, PLN02223, phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.003
Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
Query: 253 VGILHVKVVKA----MNLKKK-DLLGASDPYVKLKITEDKLPSK--KTTVKHKNLNPEWN 305
V IL VK+ ++ KK+ L D YV++ I K KTTVK+ P W
Sbjct: 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWG 467
Query: 306 EEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKEL 346
EE+ F + P+ + VYD+E G +P+ EL
Sbjct: 468 EEFTFPLTYPDLALISFEVYDYEVSTADAFCGQTCLPVSEL 508
|
Length = 537 |
| >gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 0.004
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 409 AGGGLLVVIVHEAQDVEGKH--HTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEE 466
G L V V A + G + T+ Y ++ F G+E++T+ + N +PRW F F E
Sbjct: 25 RGLATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVE 84
Query: 467 PPTNDRLHVEV 477
+L EV
Sbjct: 85 LSPGGKLRFEV 95
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 532 | |||
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 100.0 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.97 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 99.9 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.88 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.84 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.84 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.84 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.83 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.83 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 99.83 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.83 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.83 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.83 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.83 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.83 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.82 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.81 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.81 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.8 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.8 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.8 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.8 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.8 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.8 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.8 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.8 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.8 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.8 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.8 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.79 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.79 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.79 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.79 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.79 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.79 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.78 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.78 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.78 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.78 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.78 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.78 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.78 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.78 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.78 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.77 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.77 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.77 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.77 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.77 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.77 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.77 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.76 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.76 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.76 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.76 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.76 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.76 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.76 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.76 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.76 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.75 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.75 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.75 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.75 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.75 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.75 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.75 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.75 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.74 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.74 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.74 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.74 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.74 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.73 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.73 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.73 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.73 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.73 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.73 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.73 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.73 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.73 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.73 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.73 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.73 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.73 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.72 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.72 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.72 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.72 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.72 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.72 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.72 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.71 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.71 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.71 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.71 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.71 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.71 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.7 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.7 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.7 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.7 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.7 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.7 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.7 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.7 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.7 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.7 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.7 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.7 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.7 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.7 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.69 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.69 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.69 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.69 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.69 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.69 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.68 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.68 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.68 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.68 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.68 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.68 | |
| PLN03008 | 868 | Phospholipase D delta | 99.68 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.67 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.67 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.67 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.67 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.67 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.67 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.67 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.67 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.66 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.66 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.66 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.66 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.66 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.66 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.65 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.65 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.65 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.65 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.65 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.65 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.65 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.65 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.65 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.65 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.64 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.64 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.64 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.64 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.63 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.63 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.63 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.63 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.63 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.63 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.63 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.62 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.62 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.62 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.61 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.61 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.61 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.61 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.6 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.6 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.6 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.6 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.6 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.59 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.59 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.59 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.58 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 99.58 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.57 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.56 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.55 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.55 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.55 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.54 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.53 | |
| PLN03008 | 868 | Phospholipase D delta | 99.53 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.52 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.52 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.51 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.5 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.5 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.48 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.48 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.44 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 99.35 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.35 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 99.34 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 99.34 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 99.33 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 99.29 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 99.28 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.27 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 99.26 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 99.23 | |
| PLN02270 | 808 | phospholipase D alpha | 99.2 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 99.19 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 99.17 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 99.14 | |
| PLN02270 | 808 | phospholipase D alpha | 99.14 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 99.14 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 99.13 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 99.12 | |
| PF10296 | 91 | DUF2404: Putative integral membrane protein conser | 99.11 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 99.09 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 99.09 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 99.02 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 98.98 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 98.93 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 98.9 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 98.9 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 98.83 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 98.81 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 98.78 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 98.75 | |
| PLN02352 | 758 | phospholipase D epsilon | 98.67 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 98.66 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 98.66 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 98.65 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.65 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.64 | |
| PLN02352 | 758 | phospholipase D epsilon | 98.52 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 98.51 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 98.49 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 98.48 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 98.4 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 98.32 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 98.29 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 98.17 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 98.13 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 98.03 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 97.78 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 97.73 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 97.59 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 97.58 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 97.55 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 97.33 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 96.97 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 96.97 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 96.95 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 96.95 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 96.82 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 96.64 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 96.33 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 96.28 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 95.86 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 95.84 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 95.66 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 95.43 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 95.38 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 95.28 | |
| cd08687 | 98 | C2_PKN-like C2 domain in Protein kinase C-like (PK | 94.81 | |
| KOG1452 | 442 | consensus Predicted Rho GTPase-activating protein | 94.8 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 94.51 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 94.42 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 94.4 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 94.31 | |
| KOG3532 | 1051 | consensus Predicted protein kinase [General functi | 94.25 | |
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 93.77 | |
| cd08687 | 98 | C2_PKN-like C2 domain in Protein kinase C-like (PK | 93.7 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 93.17 | |
| PF15625 | 168 | CC2D2AN-C2: CC2D2A N-terminal C2 domain | 92.99 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 92.68 | |
| cd08695 | 189 | C2_Dock-B C2 domains found in Dedicator Of CytoKin | 92.44 | |
| PF15625 | 168 | CC2D2AN-C2: CC2D2A N-terminal C2 domain | 92.15 | |
| KOG1452 | 442 | consensus Predicted Rho GTPase-activating protein | 91.9 | |
| PF14429 | 184 | DOCK-C2: C2 domain in Dock180 and Zizimin proteins | 90.98 | |
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 90.14 | |
| cd08694 | 196 | C2_Dock-A C2 domains found in Dedicator Of CytoKin | 89.75 | |
| smart00142 | 100 | PI3K_C2 Phosphoinositide 3-kinase, region postulat | 89.47 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 88.79 | |
| cd08697 | 185 | C2_Dock-D C2 domains found in Dedicator Of CytoKin | 87.88 | |
| PTZ00447 | 508 | apical membrane antigen 1-like protein; Provisiona | 84.05 | |
| PF11618 | 107 | DUF3250: Protein of unknown function (DUF3250); In | 82.36 | |
| PF14429 | 184 | DOCK-C2: C2 domain in Dock180 and Zizimin proteins | 80.83 |
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-67 Score=558.40 Aligned_cols=489 Identities=26% Similarity=0.506 Sum_probs=411.0
Q ss_pred cccchhhhhcccchhhhhHhHhheeeeeEEecCCCCCcccccccc--CCHHHHHhhcCCCCCceeCCCCcchHHHHHHHH
Q 009539 2 GVISTIFGFCGFGVGISSGLVIGYFLFIYFQPTDVKNPEIRPLVE--RDSETLQQMLPEIPLWVKCPDYDRVDWLNKFLE 79 (532)
Q Consensus 2 ~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~p~w~~~~d~E~~~WlN~~l~ 79 (532)
|++||++|++||+++.++.+++.. +++|++..++.++.+|.+++ +..++++ .|+|++||||.+|+
T Consensus 165 ~v~Swifg~~~fs~~slffii~~~-~~vY~~~~~rv~rnird~v~~~~~~ek~~------------nd~ESveWLNtfL~ 231 (1227)
T COG5038 165 SVASWIFGYLGFSFASLFFIILVT-MYVYRTCIKRVRRNIRDLVQQELSEEKLE------------NDYESVEWLNTFLQ 231 (1227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------cchhHHHHHHHHHH
Confidence 679999999999998777665443 56677777666677777653 3344444 79999999999999
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHhcCCCceeeeEEEeEeeCCCCCCeEeeEEEEec-CCceEEEEeeeeEeC--------
Q 009539 80 LMWPYLDKAICKTAKNIAKPIIAEQIPKYKIESVEFETLTLGTLPPTFQGMKVYVT-DEKELIMEPCLKWAA-------- 150 (532)
Q Consensus 80 ~~Wp~~~~~~~~~i~~~~~~~l~~~~p~~~i~~~~~~~~~lG~~~p~i~~v~~~~~-~~~~~~ld~~~~~~~-------- 150 (532)
++||.++|.+++.|.+++|+.|+++.|+| |+++++++||||++||||.+||.|+. ..|.+.||++++|..
T Consensus 232 KfW~i~eP~iSqqV~dqvn~~la~~iPsF-I~~l~l~efTLGsk~PrI~~Irsyp~te~dtv~mD~~~sftP~d~sD~t~ 310 (1227)
T COG5038 232 KFWPIIEPSISQQVVDQVNQQLAEAIPSF-IDALALDEFTLGSKPPRIDGIRSYPSTESDTVVMDVDFSFTPHDISDVTA 310 (1227)
T ss_pred hheeccChHHHHHHHHHHHHHHHhhcchh-hhhhhhhhcccCCCCCceeeeeecCCCCCceEEEEeeeccCccchhhhhh
Confidence 99999999999999999999999999999 99999999999999999999999985 778999999999952
Q ss_pred -------CCceEEEEEE---ee-eEEEEEEEEEEEEEEeEEEecCCCCCCCeeeEEEEEccCCceEEEEEEEcc-----c
Q 009539 151 -------NPNVTIGVKA---FG-LKATVQVVDLQVFAQPRITLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVG-----A 214 (532)
Q Consensus 151 -------~~~i~l~~~~---~~-~~~~v~v~~~~~~g~~rv~l~pl~~~~P~~~~v~~sf~~~P~id~~~~~~g-----~ 214 (532)
|++|.|.++. +| +++||.|+|+.|.|++|++++ |++++|++..|+++|++.|.+||.++|+| .
T Consensus 311 ~~~r~~vn~kIsL~v~~Gk~~~~~~lPI~Vedl~f~g~~Rvr~~-L~~~~PfiktV~~~Lle~Pe~df~l~Plg~~~~g~ 389 (1227)
T COG5038 311 TSARASVNPKISLVVKKGKSFGSFTLPILVEDLFFKGRVRVRVE-LMSKYPFIKTVSFQLLEVPEFDFILVPLGGDFFGV 389 (1227)
T ss_pred HHHhhhcCcceeEEEEeeeeeeEEeccEEEEeeeeeEEEEEEEE-ecCCCcceeEEEEEEecCcceeEEEEEcCCCccce
Confidence 5678888765 45 899999999999999999999 99999999999999999999999999987 4
Q ss_pred cccCCchhhhhhh------ccceeeeCCcccccCCCCCcc-CCCCeEEEEEEEEEcCCCCcCC--CCCCCCcEEEEEEeC
Q 009539 215 DLMSIPGLYRFVQ------VANMYLWPKTLEVPILDPSKA-YRRPVGILHVKVVKAMNLKKKD--LLGASDPYVKLKITE 285 (532)
Q Consensus 215 ~~~~~P~l~~~i~------~~~~~v~P~~~~~~l~~~~~~-~~~~~g~L~V~v~~A~~L~~~d--~~g~~dpyv~v~~~~ 285 (532)
|++.+|||++|++ +.+|+++|+.+.+++.+.... ...+.|+|.|+|.+|++|...+ ..+..|||+++...+
T Consensus 390 dI~~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m~~~s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~ 469 (1227)
T COG5038 390 DIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGDSGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSD 469 (1227)
T ss_pred eEecCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhhccccCCeeEEEEEEEeeccCcccccccccCCCCceEEEEecc
Confidence 7999999999998 788999999999998543333 7789999999999999999988 568999999999765
Q ss_pred CcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCCeeEEEEEeCccCCCCCCeEE-EEeccccccc
Q 009539 286 DKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK-TLDLLKNMDL 364 (532)
Q Consensus 286 ~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~-~l~l~~~~~~ 364 (532)
... .||++++++.||+|||+|++.+... ++.|.++|||.+...+|+.+|.+.++|..|.....+.. ...+.
T Consensus 470 r~~--gkT~v~~nt~nPvwNEt~Yi~lns~-~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~----- 541 (1227)
T COG5038 470 RVI--GKTRVKKNTLNPVWNETFYILLNSF-TDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFL----- 541 (1227)
T ss_pred ccC--CccceeeccCCccccceEEEEeccc-CCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeee-----
Confidence 443 4999999999999999999999764 78999999999999999999999999999987754433 23332
Q ss_pred CCCCCCccccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC-C-CCCCEEEEEEcCee
Q 009539 365 NDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK-H-HTNPYARILFRGEE 442 (532)
Q Consensus 365 ~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~-~-~~dpyv~v~~~~~~ 442 (532)
.+.+..|+|+.++.|+|..++....... ..+....++|++.++++++++|... + ....+++++.+.+.
T Consensus 542 ---~~~k~vGrL~yDl~ffp~~e~k~~~~~s-------~e~~ed~n~GI~k~tl~~~~~l~~~~~~~~~~~a~l~~~~ke 611 (1227)
T COG5038 542 ---RNTKNVGRLTYDLRFFPVIEDKKELKGS-------VEPLEDSNTGILKVTLREVKALDELSSKKDNKSAELYTNAKE 611 (1227)
T ss_pred ---ccCccceEEEEeeeeecccCCccccccc-------cCCcccCCcceeEEEeeccccccCccccccceeEEEEecceE
Confidence 2578999999999999987764322111 0011123579999999999999753 2 33344899998887
Q ss_pred E-EEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCCCCceeEEEEEechhhhccc-eeceEEEeCCCCC
Q 009539 443 R-KTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNK-RINEKYHLIDSKN 520 (532)
Q Consensus 443 ~-kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~-~~~~~~~L~~~~~ 520 (532)
. .|+..+.+.+|.||+.++-.+.+. ....+.+.+.|... .+.+|+...+|.+++... .--.||++. +++
T Consensus 612 V~st~~~k~t~~~~wn~~~~~~v~~~-~ns~~~~~~~d~~~-------g~~i~~~~~~l~~li~~t~dt~~~f~~~-~~k 682 (1227)
T COG5038 612 VYSTGKLKFTNHPSWNLQYNVLVTDR-KNSSIKVVTFDVQS-------GKVIATEGSTLPDLIDRTLDTFLVFPLR-NPK 682 (1227)
T ss_pred EeccceeeeccCCceeeecceEeccC-cceeEEEEeccccc-------CceeccccccchHhhhccccceEEEEcC-CCc
Confidence 6 558999999999999999999886 55678888888752 489999999999998864 446899986 679
Q ss_pred eEEEEEEEEEeC
Q 009539 521 GRIQIELQWRTA 532 (532)
Q Consensus 521 G~i~l~~~w~p~ 532 (532)
|+|.++..|+|.
T Consensus 683 g~I~~t~~W~Pi 694 (1227)
T COG5038 683 GRIFITNYWKPI 694 (1227)
T ss_pred ceEEEEecccee
Confidence 999999999994
|
|
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=267.86 Aligned_cols=222 Identities=29% Similarity=0.474 Sum_probs=190.8
Q ss_pred cCCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeC--CCCCEEEEEEE
Q 009539 248 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD--PESQAVELAVY 325 (532)
Q Consensus 248 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~v~ 325 (532)
.|+.....|.|+|++|++|+.+|..|.+||||++++.+.+..+.+|++.++|+||+|||+|.|.+.. .....|.+.||
T Consensus 161 ~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~ 240 (421)
T KOG1028|consen 161 QYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVY 240 (421)
T ss_pred EecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEE
Confidence 5777888999999999999999976789999999999988777899999999999999999999653 34789999999
Q ss_pred EccCCCCCCeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEEccCCCCCcccccccccccCCC
Q 009539 326 DWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPE 405 (532)
Q Consensus 326 d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~ 405 (532)
|+|++++|++||++.++|..+........|.++.+..... ....|+|.++++|.|.
T Consensus 241 ~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~----~~~~gel~~sL~Y~p~-------------------- 296 (421)
T KOG1028|consen 241 DFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDS----EELAGELLLSLCYLPT-------------------- 296 (421)
T ss_pred ecCCcccccEEEEEEecCccccccccceeeeccccccCCc----ccccceEEEEEEeecC--------------------
Confidence 9999999999999999999998887778898886543221 2223899999999984
Q ss_pred CCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEcC-----eeEEEeeecCCCCCcccceEEEEecCCCCCC-eEEEE
Q 009539 406 NTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEEPPTND-RLHVE 476 (532)
Q Consensus 406 ~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~-~l~v~ 476 (532)
.|.|+|.|.+|+||... +..||||++++.. +++||.+++++.||+|||+|.|.++.....+ .+.|+
T Consensus 297 -----~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~ 371 (421)
T KOG1028|consen 297 -----AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELT 371 (421)
T ss_pred -----CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEE
Confidence 79999999999999863 6789999999843 2459999999999999999999887543333 79999
Q ss_pred EEEccccccCCCCCceeEEEEEechh
Q 009539 477 VCSVSSRIGLLHPKETLGYIDINLSD 502 (532)
Q Consensus 477 V~d~~~~~~~~~~d~~lG~~~i~L~~ 502 (532)
|||++. ++.+++||++.+....
T Consensus 372 V~d~d~----~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 372 VWDHDT----LGSNDLIGRCILGSDS 393 (421)
T ss_pred EEEccc----ccccceeeEEEecCCC
Confidence 999986 7788899999998775
|
|
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.6e-23 Score=210.69 Aligned_cols=242 Identities=19% Similarity=0.299 Sum_probs=193.6
Q ss_pred EEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCC
Q 009539 254 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKH 333 (532)
Q Consensus 254 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d 333 (532)
..|.|+|.+|+||+..+..|.+||||.+.++...+ +||.++.+++.|.|.|+|+|.++.. -..|.|-|||.| +++|
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v--~RT~tv~ksL~PF~gEe~~~~iP~~-F~~l~fYv~D~d-~~~D 80 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEV--CRTATVEKSLCPFFGEEFYFEIPRT-FRYLSFYVWDRD-LKRD 80 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhh--hhhhhhhhhcCCccccceEEecCcc-eeeEEEEEeccc-cccc
Confidence 46899999999999999999999999999997665 6999999999999999999999753 578999999999 9999
Q ss_pred CeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceE
Q 009539 334 DKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGL 413 (532)
Q Consensus 334 ~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 413 (532)
+.||.+.|.-++|....+.+.|+.|.+ .++ +....|++++++.+.+.... .-
T Consensus 81 ~~IGKvai~re~l~~~~~~d~W~~L~~-VD~----dsEVQG~v~l~l~~~e~~~~-----------------------~~ 132 (800)
T KOG2059|consen 81 DIIGKVAIKREDLHMYPGKDTWFSLQP-VDP----DSEVQGKVHLELALTEAIQS-----------------------SG 132 (800)
T ss_pred cccceeeeeHHHHhhCCCCccceeccc-cCC----ChhhceeEEEEEEeccccCC-----------------------Cc
Confidence 999999999999998888888998743 332 57899999999999875332 11
Q ss_pred EEEEEeeeecC-CC-CCCCCCEEEEEEcCee----EEEeeecCCCCCcccceEEEEecCC-----------C---CCCeE
Q 009539 414 LVVIVHEAQDV-EG-KHHTNPYARILFRGEE----RKTKHVKKNRDPRWEEEFQFMLEEP-----------P---TNDRL 473 (532)
Q Consensus 414 L~v~i~~a~~L-~~-~~~~dpyv~v~~~~~~----~kT~vv~~t~nP~w~e~f~f~v~~~-----------~---~~~~l 473 (532)
+...+.+++++ |. ++.+|||+++...+.. ++|+++++|.+|.|+|.|.|.+... + ..-.|
T Consensus 133 ~~c~~L~~r~~~P~~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~i 212 (800)
T KOG2059|consen 133 LVCHVLKTRQGLPIINGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEI 212 (800)
T ss_pred chhhhhhhcccCceeCCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeE
Confidence 12223334444 33 4679999999987654 4999999999999999999998753 1 12268
Q ss_pred EEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCC----------CCeEEEEEEEEE
Q 009539 474 HVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS----------KNGRIQIELQWR 530 (532)
Q Consensus 474 ~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~----------~~G~i~l~~~w~ 530 (532)
.+++|++... ...+.++|++.+++..+........||.|... .-|.+++.+.+.
T Consensus 213 rv~lW~~~~~---~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~ 276 (800)
T KOG2059|consen 213 RVDLWNDLNL---VINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYT 276 (800)
T ss_pred EEeeccchhh---hhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEee
Confidence 8889985432 44599999999999988866677899999532 137888877664
|
|
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.4e-22 Score=167.76 Aligned_cols=119 Identities=21% Similarity=0.375 Sum_probs=102.2
Q ss_pred eEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCC-CCCceeecEEEEEeeCCCCCEEEEEEEEccCCC
Q 009539 253 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHK-NLNPEWNEEYNFTVRDPESQAVELAVYDWEQVG 331 (532)
Q Consensus 253 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~-t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~ 331 (532)
.|.|.|+|++|++++..+ .|++||||++.+++++. +|+++.+ +.||+|||+|.|.+.+. ...|.|+|||+|.++
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~---kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~ 75 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVY---ETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFT 75 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEE---EeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCc
Confidence 489999999999998877 79999999999987653 8998865 89999999999999764 478999999999999
Q ss_pred CCCeeEEEEEeCc-cCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEE
Q 009539 332 KHDKMGMNVVPLK-ELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 382 (532)
Q Consensus 332 ~d~~iG~~~i~l~-~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~ 382 (532)
+|++||++.+++. .+..++..+.|++|.+. ++....|+|+|+++|
T Consensus 76 ~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~------~~~~~~g~i~l~l~y 121 (121)
T cd04016 76 MDERIAWTHITIPESVFNGETLDDWYSLSGK------QGEDKEGMINLVFSY 121 (121)
T ss_pred CCceEEEEEEECchhccCCCCccccEeCcCc------cCCCCceEEEEEEeC
Confidence 9999999999996 57777778889988531 234578999999987
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.1e-20 Score=159.52 Aligned_cols=121 Identities=29% Similarity=0.487 Sum_probs=106.6
Q ss_pred EEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCC
Q 009539 255 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHD 334 (532)
Q Consensus 255 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~ 334 (532)
.|+|+|++|++|+..|..|.+||||++++++.. .++|+++.++.||+|||+|.|.+.++ .+.|.|+|||++..++|+
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~--~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~ 77 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKT--VYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDD 77 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEE--EEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCc
Confidence 489999999999999988999999999997633 36899999999999999999998765 578999999999998999
Q ss_pred eeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEE
Q 009539 335 KMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 384 (532)
Q Consensus 335 ~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p 384 (532)
+||++.++++++..+...+.|++|... ++.+..|+|++.++|.|
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~~~~L~~~------~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 78 FMGSAFVDLSTLELNKPTEVKLKLEDP------NSDEDLGYISLVVTLTP 121 (121)
T ss_pred ceEEEEEEHHHcCCCCCeEEEEECCCC------CCccCceEEEEEEEECC
Confidence 999999999999998889999988431 22468999999999875
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-20 Score=161.03 Aligned_cols=119 Identities=27% Similarity=0.481 Sum_probs=100.9
Q ss_pred EEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeC-----CCCCEEEEEEEEccCC
Q 009539 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD-----PESQAVELAVYDWEQV 330 (532)
Q Consensus 256 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~-----~~~~~L~v~v~d~d~~ 330 (532)
++|+|++|+||+.++..|.+||||++++++.+ ++|++++++.||+|||+|.|.+.. +....|.++|||++.+
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~---~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~ 77 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEK---YSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL 77 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCee---eeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence 57999999999999988999999999998644 489999999999999999999976 3467899999999998
Q ss_pred CCCCeeEEEEEeCccCC--CCCCeEEEEecccccccCCCCCCccccEEEEEEE
Q 009539 331 GKHDKMGMNVVPLKELT--PEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFI 381 (532)
Q Consensus 331 ~~d~~iG~~~i~l~~l~--~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~ 381 (532)
++|++||++.++++++. .+.....|++|.... .+..+.+|+|+++++
T Consensus 78 ~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~----~~~~~~~Gei~l~~~ 126 (126)
T cd08682 78 GLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKP----GKDDKERGEIEVDIQ 126 (126)
T ss_pred CCCceeEEEEEEHHHhhccCCCcccEEEECcCCC----CCCccccceEEEEeC
Confidence 89999999999999987 555677888885321 123567899999873
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-20 Score=159.19 Aligned_cols=117 Identities=30% Similarity=0.443 Sum_probs=101.0
Q ss_pred EEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeC-CCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCC
Q 009539 254 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKH-KNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGK 332 (532)
Q Consensus 254 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~ 332 (532)
|.|+|+|++|++|+..+..|++||||++++++.. ++|+++. ++.||+|||+|.|.+.....+.|.|+|||++..+
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~---~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~- 76 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVT---KKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK- 76 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCc---cccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-
Confidence 6899999999999999988999999999998744 4788764 5899999999999998766789999999998776
Q ss_pred CCeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEE
Q 009539 333 HDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 382 (532)
Q Consensus 333 d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~ 382 (532)
|++||++.+++.++..+.....|++|.. .++..|+|+++++|
T Consensus 77 ~~~iG~~~~~l~~~~~~~~~~~w~~L~~--------~~~~~G~i~l~l~f 118 (118)
T cd08681 77 PDLIGDTEVDLSPALKEGEFDDWYELTL--------KGRYAGEVYLELTF 118 (118)
T ss_pred CcceEEEEEecHHHhhcCCCCCcEEecc--------CCcEeeEEEEEEEC
Confidence 9999999999999877666677887743 24689999999986
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.4e-20 Score=155.48 Aligned_cols=112 Identities=23% Similarity=0.441 Sum_probs=97.6
Q ss_pred eEEEEEEeeeecCCCC--CCCCCEEEEEEcCeeEEEeeecC-CCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCC
Q 009539 412 GLLVVIVHEAQDVEGK--HHTNPYARILFRGEERKTKHVKK-NRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLH 488 (532)
Q Consensus 412 g~L~v~i~~a~~L~~~--~~~dpyv~v~~~~~~~kT~vv~~-t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~ 488 (532)
|.|.|+|++|++++.. +.+||||++.+++++.+|+++++ +.||+|||+|+|.+... ...+.|+|||++. ++
T Consensus 2 g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~--~~~l~~~V~d~d~----~~ 75 (121)
T cd04016 2 GRLSITVVQAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEG--VDSIYIEIFDERA----FT 75 (121)
T ss_pred cEEEEEEEEccCCCcCCCCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCC--CcEEEEEEEeCCC----Cc
Confidence 7899999999988653 78999999999999999999876 79999999999999753 3579999999986 67
Q ss_pred CCceeEEEEEech-hhhccceeceEEEeCC----CCCeEEEEEEEE
Q 009539 489 PKETLGYIDINLS-DVVSNKRINEKYHLID----SKNGRIQIELQW 529 (532)
Q Consensus 489 ~d~~lG~~~i~L~-~l~~~~~~~~~~~L~~----~~~G~i~l~~~w 529 (532)
.|++||++.+++. .+..++..+.||+|.+ ...|+|+|++.|
T Consensus 76 ~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 76 MDERIAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred CCceEEEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence 8999999999996 4666667899999976 346999999875
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.2e-20 Score=156.38 Aligned_cols=116 Identities=31% Similarity=0.509 Sum_probs=102.3
Q ss_pred EEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCCe
Q 009539 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDK 335 (532)
Q Consensus 256 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~ 335 (532)
|+|+|++|++|++.+..|.+||||++++.+.....++|++++++.||+|||+|.|.+.....+.|.|+|||++.. +|++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 789999999999998889999999999975433456999999999999999999999766567899999999988 8999
Q ss_pred eEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEE
Q 009539 336 MGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 382 (532)
Q Consensus 336 iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~ 382 (532)
||++.+++.++..+.....|+++. .+..|+|++++.+
T Consensus 81 iG~~~~~l~~l~~g~~~~~~~~L~----------~~~~g~l~~~~~~ 117 (119)
T cd04036 81 LGTVLFDVSKLKLGEKVRVTFSLN----------PQGKEELEVEFLL 117 (119)
T ss_pred cEEEEEEHHHCCCCCcEEEEEECC----------CCCCceEEEEEEe
Confidence 999999999999988889999882 3468999998865
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-19 Score=193.36 Aligned_cols=275 Identities=23% Similarity=0.388 Sum_probs=206.0
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEcc
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWE 328 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d 328 (532)
++.+.|.++|+|..|.+|.+....|++|||+++.+++.. ++||-....+.||.|||..+.++..+ .+.+.++++|++
T Consensus 706 ~~~pIg~irv~v~~andl~n~i~g~~~dPya~v~~n~~~--k~rti~~~~~~npiw~~i~Yv~v~sk-~~r~~l~~~~~~ 782 (1227)
T COG5038 706 YDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVNNLV--KYRTIYGSSTLNPIWNEILYVPVTSK-NQRLTLECMDYE 782 (1227)
T ss_pred ecCccceEEEEeehhhcccccccCcccccceEEEeccee--EEEEecccCccccceeeeEEEEecCC-ccEEeeeeecch
Confidence 678999999999999999988888999999999998643 47999999999999999999999876 577999999999
Q ss_pred CCCCCCeeEEEEEeCccCCCCCCeE---EEEecccccccCCCCCCccccEEEEEEEEEEccCCCCC--------------
Q 009539 329 QVGKHDKMGMNVVPLKELTPEEPSV---KTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLP-------------- 391 (532)
Q Consensus 329 ~~~~d~~iG~~~i~l~~l~~~~~~~---~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~-------------- 391 (532)
..+.|..+|++.++++++....... .+..-.....+-...+....|++.+.+.|+|..-.-..
T Consensus 783 ~sgddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~~ 862 (1227)
T COG5038 783 ESGDDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEKR 862 (1227)
T ss_pred hccccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccCCcceeEEEEEEEEeecccCChHHhcchhhhhhHHH
Confidence 9999999999999999987632211 11111000111111136788999999999996321000
Q ss_pred ----------c----------------------c---------c-------------------------------cc-cc
Q 009539 392 ----------K----------------------S---------F-------------------------------EE-SQ 398 (532)
Q Consensus 392 ----------~----------------------~---------~-------------------------------~~-~~ 398 (532)
+ + . ++ ..
T Consensus 863 ~~~~~~~~l~ek~~~~~D~~~~~~e~~~v~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd~~~ 942 (1227)
T COG5038 863 KSEKRKSALDEKTISLVDKEDSVEESIEVEELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIFFDDASH 942 (1227)
T ss_pred HhhhhhcccCccccchhccccchhcceeeccccchhhcchhhhhhhhhcccCCceEEEEEEeecCCcceEEEEEecCCCC
Confidence 0 0 0 00 00
Q ss_pred c---cc------------------------------c-CCCC--------------------------------------
Q 009539 399 T---VQ------------------------------K-APEN-------------------------------------- 406 (532)
Q Consensus 399 ~---~~------------------------------~-~~~~-------------------------------------- 406 (532)
. .. + ++..
T Consensus 943 ~~i~s~~~~t~~~~~~~~g~~~ireL~~s~~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v~~~ 1022 (1227)
T COG5038 943 PQIVSSKAPTRGERNGESGDTFIRELEYSETTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLVQVS 1022 (1227)
T ss_pred ceeeccCCcccccccchhhhhhhhhhccceEEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecCCCceEEEEEE
Confidence 0 00 0 0000
Q ss_pred ------------CCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEcCe-eEEEeeecCCCCCcccceEEEEecCCCCC
Q 009539 407 ------------TPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGE-ERKTKHVKKNRDPRWEEEFQFMLEEPPTN 470 (532)
Q Consensus 407 ------------~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~~-~~kT~vv~~t~nP~w~e~f~f~v~~~~~~ 470 (532)
.-.++|.|.|.+.+|.||+.. +.+||||++.++++ .++|+++++++||+|||.|+..+.+. ..
T Consensus 1023 ~tPv~~~l~~~emv~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r-~~ 1101 (1227)
T COG5038 1023 YTPVPVKLPPVEMVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNR-VK 1101 (1227)
T ss_pred EeecccccCcceeecccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeecc-cc
Confidence 012578899999999999873 56999999999998 57999999999999999999999876 56
Q ss_pred CeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCC----CeEEEEEEEEEe
Q 009539 471 DRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK----NGRIQIELQWRT 531 (532)
Q Consensus 471 ~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~----~G~i~l~~~w~p 531 (532)
+.+.+.|+|++.. .+++.||.+.++|+.+..+...+...+|.+.. +|.++....++|
T Consensus 1102 D~~~i~v~Dwd~~----~knd~lg~~~idL~~l~~~~~~n~~i~ldgk~~~~~~g~~~~~~~~r~ 1162 (1227)
T COG5038 1102 DVLTINVNDWDSG----EKNDLLGTAEIDLSKLEPGGTTNSNIPLDGKTFIVLDGTLHPGFNFRS 1162 (1227)
T ss_pred ceEEEEEeecccC----CCccccccccccHhhcCcCCccceeeeccCcceEecccEeecceecch
Confidence 7899999999863 67999999999999998877766666776543 466666666654
|
|
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.5e-20 Score=159.07 Aligned_cols=121 Identities=30% Similarity=0.496 Sum_probs=103.3
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEcc
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWE 328 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d 328 (532)
.....|.|+|+|++|++|+..|..|.+||||+++++... .+|++++++.||.|||+|.|.+.++..+.|.++|||++
T Consensus 10 ~~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~---~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d 86 (136)
T cd08375 10 RASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQE---HKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRD 86 (136)
T ss_pred CCCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEe---eeccccCCCCCCccCceEEEEecCccCCEEEEEEEECC
Confidence 455789999999999999999988999999999997544 59999999999999999999998776789999999999
Q ss_pred CCCCCCeeEEEEEeCccCCCCC-----CeEEEEecccccccCCCCCCccccEEEEEEEE
Q 009539 329 QVGKHDKMGMNVVPLKELTPEE-----PSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 382 (532)
Q Consensus 329 ~~~~d~~iG~~~i~l~~l~~~~-----~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~ 382 (532)
..++|++||++.+++.++.... ....++.+ .....|+|++++.+
T Consensus 87 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~----------~~~~~g~i~l~~~~ 135 (136)
T cd08375 87 FFSPDDFLGRTEIRVADILKETKESKGPITKRLLL----------HEVPTGEVVVKLDL 135 (136)
T ss_pred CCCCCCeeEEEEEEHHHhccccccCCCcEEEEecc----------ccccceeEEEEEEe
Confidence 9999999999999999998622 12233332 36788999999976
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.4e-20 Score=155.65 Aligned_cols=115 Identities=30% Similarity=0.510 Sum_probs=103.0
Q ss_pred EEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCC
Q 009539 255 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHD 334 (532)
Q Consensus 255 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~ 334 (532)
+++|+|++|++|+..+..|.+||||++++++.. .+|+++++|.||.|||+|.|.+.+...+.|.++|||++..++|+
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~ 77 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEK---YKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDE 77 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEe---EecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 478999999999999988999999999997543 58999999999999999999998766789999999999988999
Q ss_pred eeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEE
Q 009539 335 KMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 383 (532)
Q Consensus 335 ~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~ 383 (532)
+||++.+++.++..+.....|++|. ...|+|++.+.|.
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~w~~L~-----------~~~G~~~~~~~~~ 115 (116)
T cd08376 78 FIGRCEIDLSALPREQTHSLELELE-----------DGEGSLLLLLTLT 115 (116)
T ss_pred eEEEEEEeHHHCCCCCceEEEEEcc-----------CCCcEEEEEEEec
Confidence 9999999999999988899999882 2369999998773
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.9e-20 Score=154.33 Aligned_cols=107 Identities=27% Similarity=0.443 Sum_probs=92.2
Q ss_pred EEEEEEEcCCCCcCCCCCCCCcEEEEEEeC----CcCCceeeEeeCCCCCceeecEEEEEeeC---CCCCEEEEEEEEcc
Q 009539 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITE----DKLPSKKTTVKHKNLNPEWNEEYNFTVRD---PESQAVELAVYDWE 328 (532)
Q Consensus 256 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~----~~~~~~~T~v~~~t~nP~Wne~f~f~v~~---~~~~~L~v~v~d~d 328 (532)
|+|+|++|++|+..+ .|.+||||++++.+ .+.++++|+++++|+||+|||+|.|.+.. +....|.|.|||+|
T Consensus 2 L~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 2 VTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred EEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 899999999999988 49999999999853 33334689999999999999999999974 23467999999999
Q ss_pred CCCCCCeeEEEEEeCccCCCCCCeEEEEecccccc
Q 009539 329 QVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMD 363 (532)
Q Consensus 329 ~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~ 363 (532)
..++|++||++.++++++..++....|++|.+...
T Consensus 81 ~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~~~ 115 (120)
T cd08395 81 FARDDRLVGVTVLQLRDIAQAGSCACWLPLGRRIH 115 (120)
T ss_pred ccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCccc
Confidence 88889999999999999999988889999865443
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.3e-20 Score=154.94 Aligned_cols=107 Identities=18% Similarity=0.325 Sum_probs=90.1
Q ss_pred cCCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeC-CcCCceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEEEE
Q 009539 248 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITE-DKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAV 324 (532)
Q Consensus 248 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~-~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v 324 (532)
.|+...|.|+|+|++|++|+ . .|.+||||++++.+ .+..+++|+++++|+||+|||+|.|.+... ....|.|+|
T Consensus 8 ~Y~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V 84 (118)
T cd08677 8 SYDKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTL 84 (118)
T ss_pred EEcCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEE
Confidence 35566799999999999998 3 36799999999975 344567999999999999999999998643 367899999
Q ss_pred EEccCCCCCCeeEEEEEeCccCCCCCCeEEEEe
Q 009539 325 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLD 357 (532)
Q Consensus 325 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~ 357 (532)
||+|+++++++||++.++++++..+...++|.+
T Consensus 85 ~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~ 117 (118)
T cd08677 85 RCCDRFSRHSTLGELRLKLADVSMMLGAAQWVD 117 (118)
T ss_pred EeCCCCCCCceEEEEEEccccccCCccccchhc
Confidence 999999999999999999998866655556654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.8e-20 Score=153.49 Aligned_cols=113 Identities=22% Similarity=0.249 Sum_probs=96.5
Q ss_pred cEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCCCCCCCEEEEEEcC----eeEEEeeec
Q 009539 374 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGKHHTNPYARILFRG----EERKTKHVK 449 (532)
Q Consensus 374 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~~~~dpyv~v~~~~----~~~kT~vv~ 449 (532)
|+|+++++|.|. .+.|+|+|++|+||+..+.+||||++++.. .+++|++.+
T Consensus 1 ~~l~fsL~Y~~~-------------------------~~~L~V~vikA~~L~~~g~sDPYVKv~L~~~~k~~k~kT~v~r 55 (118)
T cd08677 1 PKLHYSLSYDKQ-------------------------KAELHVNILEAENISVDAGCECYISGCVSVSEGQKEAQTALKK 55 (118)
T ss_pred CeEEEEEEEcCc-------------------------CCEEEEEEEEecCCCCCCCCCeEEEEEEcCCcCccEEEcceec
Confidence 579999999874 789999999999999777899999999964 356999999
Q ss_pred CCCCCcccceEEEEecCCCC-CCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEe
Q 009539 450 KNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHL 515 (532)
Q Consensus 450 ~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L 515 (532)
+|.||+|||+|.|.+..... ...|.++|||+|+ ++++++||++.++|+++.......+|-+|
T Consensus 56 ktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Dr----fs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 56 LALHTQWEEELVFPLPEEESLDGTLTLTLRCCDR----FSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred CCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCC----CCCCceEEEEEEccccccCCccccchhcC
Confidence 99999999999999876433 2379999999997 78999999999999987555555677654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-19 Score=153.98 Aligned_cols=116 Identities=28% Similarity=0.421 Sum_probs=99.0
Q ss_pred EEEEEEEEcCC---CCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCC
Q 009539 255 ILHVKVVKAMN---LKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVG 331 (532)
Q Consensus 255 ~L~V~v~~A~~---L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~ 331 (532)
.|+|+|++|++ |+.+|..|.+||||++++++++. ||++++++.||+|||+|.|.+.++ ...|.|+|||++..+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~---rTk~~~~~~nP~WnE~f~f~v~~~-~~~l~v~V~d~d~~~ 76 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWV---RTRTVEDSSNPRWNEQYTWPVYDP-CTVLTVGVFDNSQSH 76 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEe---EcCcccCCCCCcceeEEEEEecCC-CCEEEEEEEECCCcc
Confidence 38999999999 88899999999999999987653 899999999999999999999875 468999999998763
Q ss_pred ------CCCeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEE
Q 009539 332 ------KHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVV 378 (532)
Q Consensus 332 ------~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l 378 (532)
+|++||++.++++++..+.....|++|... + .++.+..|+|+.
T Consensus 77 ~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~-~---~~~~~~~g~l~~ 125 (126)
T cd08379 77 WKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSL-N---PSGVKKMGELEC 125 (126)
T ss_pred ccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeC-C---CCCccCCcEEEe
Confidence 899999999999999988888889988532 1 123567788764
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.4e-20 Score=158.06 Aligned_cols=99 Identities=46% Similarity=0.751 Sum_probs=91.6
Q ss_pred CCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCC
Q 009539 251 RPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQV 330 (532)
Q Consensus 251 ~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~ 330 (532)
...|.|+|+|++|.||..+|..+++||||.+.+++++. +|+++++++||+|||+|.|.+.++ ...|++.|||+|.+
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~l---kT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~f 78 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKL---KTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTF 78 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeee---eeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCC
Confidence 46799999999999999999889999999999998876 899999999999999999999987 68999999999999
Q ss_pred CCCCeeEEEEEeCccCCCCCCeE
Q 009539 331 GKHDKMGMNVVPLKELTPEEPSV 353 (532)
Q Consensus 331 ~~d~~iG~~~i~l~~l~~~~~~~ 353 (532)
++||+||.|+|+|..+.......
T Consensus 79 s~dD~mG~A~I~l~p~~~~~~~~ 101 (168)
T KOG1030|consen 79 SSDDFMGEATIPLKPLLEAQKMD 101 (168)
T ss_pred CcccccceeeeccHHHHHHhhhh
Confidence 99999999999999998765444
|
|
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.6e-19 Score=157.82 Aligned_cols=129 Identities=22% Similarity=0.318 Sum_probs=106.2
Q ss_pred EEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCC-CCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCC
Q 009539 255 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHK-NLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKH 333 (532)
Q Consensus 255 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~-t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d 333 (532)
.|+|+|++|++|+..+..|.+||||+++++++. .+|+++.+ +.||+|||+|.|.+.++..+.|.|+|||++..++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~---~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~d 77 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQV---LRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKD 77 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEE---eeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCC
Confidence 389999999999999999999999999998744 48888866 69999999999999876667999999999988889
Q ss_pred CeeEEEEEeCccCCCC----CCeEEEEeccccccc-CCCCCCccccEEEEEEEEEEcc
Q 009539 334 DKMGMNVVPLKELTPE----EPSVKTLDLLKNMDL-NDGQNEKSRGQLVVEFIYKPFK 386 (532)
Q Consensus 334 ~~iG~~~i~l~~l~~~----~~~~~~l~l~~~~~~-~~~~~~~~~G~l~l~l~~~p~~ 386 (532)
++||++.++|+++..+ .....|++|...... .+++..+.+|+|+|+++|.+..
T Consensus 78 d~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~ 135 (150)
T cd04019 78 EPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGY 135 (150)
T ss_pred CeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcc
Confidence 9999999999998753 345788888654211 1123457789999999998643
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.80 E-value=5e-19 Score=152.49 Aligned_cols=122 Identities=26% Similarity=0.475 Sum_probs=104.5
Q ss_pred EEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCC
Q 009539 255 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHD 334 (532)
Q Consensus 255 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~ 334 (532)
.|+|+|++|++|+..+..|.+||||++++++.. .+|++++++.||+|||+|.|.+.......|.|+|||++..++++
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~ 77 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQT---LETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKND 77 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEE---EeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 389999999999999988899999999997544 58999999999999999999998766678999999999999999
Q ss_pred eeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEE
Q 009539 335 KMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEF 380 (532)
Q Consensus 335 ~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l 380 (532)
+||++.+++.++..+.....|+++.+... .....++..|.|++.+
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~w~~L~~~~~-~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 78 FLGKVVFSIQTLQQAKQEEGWFRLLPDPR-AEEESGGNLGSLRLKV 122 (123)
T ss_pred EeEEEEEEHHHcccCCCCCCEEECCCCCC-CCccccCceEEEEEEe
Confidence 99999999999987766778888865432 2233577899998876
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.4e-19 Score=151.42 Aligned_cols=112 Identities=30% Similarity=0.553 Sum_probs=100.8
Q ss_pred eEEEEEEeeeecCCCC---------CCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccc
Q 009539 412 GLLVVIVHEAQDVEGK---------HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSS 482 (532)
Q Consensus 412 g~L~v~i~~a~~L~~~---------~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~ 482 (532)
|+|+|+|++|+||+.. +.+||||+++++++..+|++++++.||.|||.|+|.+... ..+.+.++|||++.
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~-~~~~l~i~v~d~~~ 79 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEV-PGQELEIELFDEDP 79 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCC-CCCEEEEEEEecCC
Confidence 6799999999999853 4689999999999889999999999999999999999764 45689999999975
Q ss_pred cccCCCCCceeEEEEEechhhhccceeceEEEeCCCCCeEEEEEEEE
Q 009539 483 RIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQW 529 (532)
Q Consensus 483 ~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~w 529 (532)
. .+++||++.++|+++..+....+||+|.+..+|+|+|+++|
T Consensus 80 ----~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~~~~~~~ 121 (121)
T cd08391 80 ----D-KDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW 121 (121)
T ss_pred ----C-CCCcEEEEEEEHHHhcccCccceEEECcCCCCceEEEEEeC
Confidence 3 78999999999999988777889999998789999999998
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.7e-19 Score=151.99 Aligned_cols=122 Identities=31% Similarity=0.497 Sum_probs=101.3
Q ss_pred eEEEEEEEEEcCCCCcCCC-CCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCC
Q 009539 253 VGILHVKVVKAMNLKKKDL-LGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVG 331 (532)
Q Consensus 253 ~g~L~V~v~~A~~L~~~d~-~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~ 331 (532)
.|.|+|+|++|++|+..+. .+.+||||++++++. ...++|++++++.||.|||.|.|.+. ...+.|.|+|||++..+
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~-~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~~ 78 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR-RELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFNDKR 78 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCC-CcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCCCC
Confidence 4899999999999997653 467899999999873 23469999999999999999999987 34789999999999888
Q ss_pred CCCeeEEEEEeCccCCCCCCeE-EEEecccccccCCCCCCccccEEEEEEEEEE
Q 009539 332 KHDKMGMNVVPLKELTPEEPSV-KTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 384 (532)
Q Consensus 332 ~d~~iG~~~i~l~~l~~~~~~~-~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p 384 (532)
+|++||++.+++.++....... .+..+. .+++..|+|+++++|.|
T Consensus 79 ~d~~iG~~~~~l~~l~~~~~~~~~~~~~~--------~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 79 KDKLIGTAEFDLSSLLQNPEQENLTKNLL--------RNGKPVGELNYDLRFFP 124 (124)
T ss_pred CCceeEEEEEEHHHhccCccccCcchhhh--------cCCccceEEEEEEEeCC
Confidence 9999999999999999775543 222221 14667899999999986
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.4e-19 Score=149.82 Aligned_cols=119 Identities=17% Similarity=0.283 Sum_probs=100.9
Q ss_pred EEEEEEEcCCCCcCC-CCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCC
Q 009539 256 LHVKVVKAMNLKKKD-LLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHD 334 (532)
Q Consensus 256 L~V~v~~A~~L~~~d-~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~ 334 (532)
|.|+|++|+||+..+ ..|.+||||+++++++. .++|+++++|.||+|||+|.|.+.+. ...|.|.|||++..++|+
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~--~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~ 78 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEE--VFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDS 78 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCcc--EEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCc
Confidence 689999999999874 45789999999997543 36899999999999999999999753 479999999999999999
Q ss_pred eeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEE
Q 009539 335 KMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 382 (532)
Q Consensus 335 ~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~ 382 (532)
+||++.++++++..+...+.|++|.+.. ...+..|+|+++++|
T Consensus 79 ~iG~~~i~l~~l~~~~~~~~w~~L~~~~-----~~~~~~G~i~l~~~~ 121 (121)
T cd08401 79 VIGKVAIKKEDLHKYYGKDTWFPLQPVD-----ADSEVQGKVHLELRL 121 (121)
T ss_pred eEEEEEEEHHHccCCCCcEeeEEEEccC-----CCCcccEEEEEEEEC
Confidence 9999999999999887788899885431 124468999999864
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.4e-19 Score=153.11 Aligned_cols=120 Identities=34% Similarity=0.527 Sum_probs=101.3
Q ss_pred EEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCC---CCEEEEEEEEccCCC-
Q 009539 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE---SQAVELAVYDWEQVG- 331 (532)
Q Consensus 256 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~---~~~L~v~v~d~d~~~- 331 (532)
|+|+|++|++|+..+..|.+||||+++++++. ++|++++++.||+|||+|.|.+.++. ...|.|+|||++..+
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~---~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~ 78 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQK---KRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGR 78 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEEEECCEE---ecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcC
Confidence 89999999999999988999999999998754 48999999999999999999987543 368999999998876
Q ss_pred CCCeeEEEEEeCccCC-CCCCeEEEEecccccccCCCCCCccccEEEEEEEEE
Q 009539 332 KHDKMGMNVVPLKELT-PEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 383 (532)
Q Consensus 332 ~d~~iG~~~i~l~~l~-~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~ 383 (532)
++++||++.++++++. .+.....|++|.+. ...++.+|+|++++.+.
T Consensus 79 ~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~-----~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 79 RRSFLGRVRISGTSFVPPSEAVVQRYPLEKR-----GLFSRVRGEIGLKVYIT 126 (127)
T ss_pred CCCeeeEEEEcHHHcCCCCCccceEeEeeeC-----CCCCCccEEEEEEEEEc
Confidence 8999999999999998 45666788887432 11245799999999764
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.5e-19 Score=152.96 Aligned_cols=123 Identities=29% Similarity=0.476 Sum_probs=103.5
Q ss_pred EEEEEEEEEcCCCCcCCC--CCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCC
Q 009539 254 GILHVKVVKAMNLKKKDL--LGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVG 331 (532)
Q Consensus 254 g~L~V~v~~A~~L~~~d~--~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~ 331 (532)
|+|+|+|++|++|+..+. .|.+||||++++++.. .+|++++++.||.|||+|.|.+.++..+.|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~---~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~ 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQR---FKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA 77 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEE---EecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC
Confidence 689999999999999988 8899999999997543 58999999999999999999998766789999999999888
Q ss_pred CCCeeEEEEEeCccCCC---CCCeEEEEecccccccCCCCCCccccEEEEEEEE
Q 009539 332 KHDKMGMNVVPLKELTP---EEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 382 (532)
Q Consensus 332 ~d~~iG~~~i~l~~l~~---~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~ 382 (532)
++++||++.+++.++.. ......|+.|.... ..+.....|+|+++++|
T Consensus 78 ~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~---~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 78 GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTR---PGKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCCcceEEEEEHHHhhcccccCccceeEEccCcc---cCccccccceEEEEEEC
Confidence 99999999999999973 23456788774321 11345689999999875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.6e-19 Score=153.18 Aligned_cols=110 Identities=27% Similarity=0.454 Sum_probs=95.4
Q ss_pred eEEEEEEEEEcCCCCcCC-CCCCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEE-Ecc
Q 009539 253 VGILHVKVVKAMNLKKKD-LLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVY-DWE 328 (532)
Q Consensus 253 ~g~L~V~v~~A~~L~~~d-~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~-d~d 328 (532)
.|.|.|+|++|+||+..+ ..|.+||||++++.+.. ..++||+++++|+||+|||+|.|.+. .....|.++|| |++
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~~ 106 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDYG 106 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCCC
Confidence 589999999999999864 56889999999997654 34679999999999999999999997 56789999999 678
Q ss_pred CCCCCCeeEEEEEeCccCCCCCCeEEEEecccccc
Q 009539 329 QVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMD 363 (532)
Q Consensus 329 ~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~ 363 (532)
..+++++||++.|+|+++..+.....|++|.+...
T Consensus 107 ~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~~ 141 (146)
T cd04028 107 RMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTSS 141 (146)
T ss_pred CCCCCceEEEEEEEcccccCCCCceeEEecCCccc
Confidence 88899999999999999987777788998866433
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-18 Score=149.48 Aligned_cols=122 Identities=22% Similarity=0.341 Sum_probs=102.0
Q ss_pred eEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCC
Q 009539 253 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGK 332 (532)
Q Consensus 253 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~ 332 (532)
...|+|+|++|+||+.. +.+||||++++++.. ..+|+++ ++.||.|||+|.|.+..+....+.|.|||++..++
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~--~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~ 76 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVK--VARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSK 76 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEe--EEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCC
Confidence 35799999999999875 468999999997643 2578874 68999999999998765544689999999999999
Q ss_pred CCeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEE
Q 009539 333 HDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 384 (532)
Q Consensus 333 d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p 384 (532)
|++||++.++|.++..+...+.|+++.+.. ....+..|+|+++++|.+
T Consensus 77 d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~----~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 77 DSEIAEVTVQLSKLQNGQETDEWYPLSSAS----PLKGGEWGSLRIRARYSH 124 (126)
T ss_pred CCeEEEEEEEHhHccCCCcccEeEEcccCC----CCCCCcCcEEEEEEEEEc
Confidence 999999999999999888888899886531 123567899999999986
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.5e-19 Score=152.05 Aligned_cols=105 Identities=30% Similarity=0.414 Sum_probs=92.0
Q ss_pred eEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEe-e--CCCCCEEEEEEEEc
Q 009539 253 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTV-R--DPESQAVELAVYDW 327 (532)
Q Consensus 253 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v-~--~~~~~~L~v~v~d~ 327 (532)
.+.|.|+|++|++|+..+ .|.+||||++++.+.. ..+++|++++++.||+|||+|.|.+ . +.....|.++|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 578999999999999999 8999999999998643 3457999999999999999999987 2 33467899999999
Q ss_pred cCCCCCCeeEEEEEeCccCCCCCCeEEEEec
Q 009539 328 EQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 358 (532)
Q Consensus 328 d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l 358 (532)
+..+++++||++.++|+++..++....|++|
T Consensus 91 d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 91 DSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 9999999999999999999987767777765
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-18 Score=149.72 Aligned_cols=122 Identities=25% Similarity=0.460 Sum_probs=103.3
Q ss_pred EEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCCe
Q 009539 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDK 335 (532)
Q Consensus 256 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~ 335 (532)
|.|+|++|+||+. ..|.+||||+++++.. ...++|++++++.||+|||+|.|.+.. ..+.|.|+|||++..++|++
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~-~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~ 76 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEP-PQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKF 76 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCC-CcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCce
Confidence 5799999999988 5689999999999742 234699999999999999999999854 46789999999999989999
Q ss_pred eEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEEc
Q 009539 336 MGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF 385 (532)
Q Consensus 336 iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 385 (532)
||++.++++++..+.....|+++.... ..+....|+|++++.|.+.
T Consensus 77 lG~~~i~l~~l~~~~~~~~~~~L~~~~----~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 77 LGLAIVPFDELRKNPSGRQIFPLQGRP----YEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred EEEEEEeHHHhccCCceeEEEEecCCC----CCCCCcceEEEEEEEEecc
Confidence 999999999999887777888874321 1235689999999999864
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.6e-19 Score=151.31 Aligned_cols=111 Identities=25% Similarity=0.375 Sum_probs=95.2
Q ss_pred EEEEEeeeecCCCC---CCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCC----CCCCeEEEEEEEccccccC
Q 009539 414 LVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEP----PTNDRLHVEVCSVSSRIGL 486 (532)
Q Consensus 414 L~v~i~~a~~L~~~---~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~----~~~~~l~v~V~d~~~~~~~ 486 (532)
++|+|++|+||+.. +.+||||+++++++++||++++++.||+|||.|+|.+... .....|.++|||++.
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~---- 76 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL---- 76 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc----
Confidence 47999999999853 5799999999999999999999999999999999999762 234689999999985
Q ss_pred CCCCceeEEEEEechhhh--ccceeceEEEeCCC------CCeEEEEEEE
Q 009539 487 LHPKETLGYIDINLSDVV--SNKRINEKYHLIDS------KNGRIQIELQ 528 (532)
Q Consensus 487 ~~~d~~lG~~~i~L~~l~--~~~~~~~~~~L~~~------~~G~i~l~~~ 528 (532)
++.|++||++.++|+++. .+....+||+|.+. ..|+|+|+++
T Consensus 77 ~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 77 LGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred cCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 678999999999999998 45567899999743 2599999875
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.6e-19 Score=150.60 Aligned_cols=115 Identities=30% Similarity=0.503 Sum_probs=100.6
Q ss_pred EEEEEEEEEcCCCCcCCC------CCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEc
Q 009539 254 GILHVKVVKAMNLKKKDL------LGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDW 327 (532)
Q Consensus 254 g~L~V~v~~A~~L~~~d~------~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~ 327 (532)
|+|+|+|++|++|+..+. .|.+||||++++++. .++|++++++.||+|||+|.|.+.+...+.|.++|||+
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~---~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~ 77 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQ---TFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDE 77 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCE---eEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEec
Confidence 689999999999998875 368999999999863 36999999999999999999999876678999999999
Q ss_pred cCCCCCCeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEE
Q 009539 328 EQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 382 (532)
Q Consensus 328 d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~ 382 (532)
+.. ++++||++.++++++..+.....|++|. ....|+|+++++|
T Consensus 78 ~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~----------~~~~G~~~~~~~~ 121 (121)
T cd08391 78 DPD-KDDFLGRLSIDLGSVEKKGFIDEWLPLE----------DVKSGRLHLKLEW 121 (121)
T ss_pred CCC-CCCcEEEEEEEHHHhcccCccceEEECc----------CCCCceEEEEEeC
Confidence 987 8999999999999998877778899872 3368999998865
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-18 Score=149.51 Aligned_cols=115 Identities=19% Similarity=0.312 Sum_probs=98.8
Q ss_pred ccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC----CCCCCEEEEEEcC-----eeE
Q 009539 373 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK----HHTNPYARILFRG-----EER 443 (532)
Q Consensus 373 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~----~~~dpyv~v~~~~-----~~~ 443 (532)
.|+|++++.|.+. .+.|.|+|++|+||+.. +.+||||++++.. .++
T Consensus 1 ~G~i~~sl~y~~~-------------------------~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~ 55 (125)
T cd04029 1 SGEILFSLSYDYK-------------------------TQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKR 55 (125)
T ss_pred CcEEEEEEEEECC-------------------------CCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccce
Confidence 5999999999853 78899999999999752 5799999999952 346
Q ss_pred EEeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeC
Q 009539 444 KTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLI 516 (532)
Q Consensus 444 kT~vv~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 516 (532)
||++++++.||+|||+|.|.+..... ...|.++|||++. ++++++||++.++|.++..++....||+|.
T Consensus 56 kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~----~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 56 KTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDR----FGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred EeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC----CCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 99999999999999999999875322 3479999999975 678999999999999998888889999983
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.3e-18 Score=153.23 Aligned_cols=123 Identities=28% Similarity=0.463 Sum_probs=103.6
Q ss_pred eEEEEEEEEEcCCCCcCC------------------------------CCCCCCcEEEEEEeCCcCCceeeEeeCCCCCc
Q 009539 253 VGILHVKVVKAMNLKKKD------------------------------LLGASDPYVKLKITEDKLPSKKTTVKHKNLNP 302 (532)
Q Consensus 253 ~g~L~V~v~~A~~L~~~d------------------------------~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP 302 (532)
.|+|.|+|.+|++|+++| ..|.+||||++++++.+. .+|++++++.||
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~--~rT~v~~~~~nP 83 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARV--ARTRVIENSENP 83 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEe--eEEEEeCCCCCC
Confidence 589999999999999987 246789999999986543 589999999999
Q ss_pred eeecEEEEEeeCCCCCEEEEEEEEccCCCCCCeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEE
Q 009539 303 EWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 382 (532)
Q Consensus 303 ~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~ 382 (532)
+|||+|.|.+.+. .+.|.|+|||+|..+ +++||++.++++++..+...+.|+++... ..+..+..|+|+++++|
T Consensus 84 ~WnE~F~~~~~~~-~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~----~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 84 VWNESFHIYCAHY-ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDS----NGKPPKPGAKIRVSLQF 157 (158)
T ss_pred ccceEEEEEccCC-CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCC----CCCCCCCCCEEEEEEEE
Confidence 9999999998765 578999999999775 68999999999999988888899998542 11234567899999998
Q ss_pred E
Q 009539 383 K 383 (532)
Q Consensus 383 ~ 383 (532)
.
T Consensus 158 ~ 158 (158)
T cd04015 158 T 158 (158)
T ss_pred C
Confidence 3
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-18 Score=148.37 Aligned_cols=112 Identities=27% Similarity=0.507 Sum_probs=97.4
Q ss_pred eEEEEEEeeeecCCCC---CCCCCEEEEEEcCeeEEEeeecC-CCCCcccceEEEEecCCCCCCeEEEEEEEccccccCC
Q 009539 412 GLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKK-NRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 487 (532)
Q Consensus 412 g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~~~~kT~vv~~-t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~ 487 (532)
|.|+|+|++|+||+.. +.+||||++++++...+|+++++ +.||+|||.|.|.+... ..+.|.++|||++. .
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~-~~~~l~i~v~d~~~----~ 75 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITED-KKPILKVAVFDDDK----R 75 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCC-CCCEEEEEEEeCCC----C
Confidence 6899999999999863 58999999999998889998765 78999999999999874 45689999999875 3
Q ss_pred CCCceeEEEEEechhhhccceeceEEEeCCCC--CeEEEEEEEE
Q 009539 488 HPKETLGYIDINLSDVVSNKRINEKYHLIDSK--NGRIQIELQW 529 (532)
Q Consensus 488 ~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~--~G~i~l~~~w 529 (532)
+ |++||++.++++++..+....+||+|...+ .|+|+|+++|
T Consensus 76 ~-~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i~l~l~f 118 (118)
T cd08681 76 K-PDLIGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELTF 118 (118)
T ss_pred C-CcceEEEEEecHHHhhcCCCCCcEEeccCCcEeeEEEEEEEC
Confidence 4 899999999999998876778999997653 6999999986
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.6e-18 Score=147.60 Aligned_cols=123 Identities=21% Similarity=0.346 Sum_probs=101.7
Q ss_pred CeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCC
Q 009539 252 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVG 331 (532)
Q Consensus 252 ~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~ 331 (532)
|.++|+|+|++|++|+..+..|.+||||++.++++. .+|++++++.||+|||.|.|.+.+. ...|.|+|||++..
T Consensus 1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~- 75 (126)
T cd04046 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGES---VRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLL- 75 (126)
T ss_pred CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEE---EEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCC-
Confidence 467999999999999999988999999999998764 4999999999999999999988764 67899999999876
Q ss_pred CCCeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEE
Q 009539 332 KHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 384 (532)
Q Consensus 332 ~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p 384 (532)
+|++||++.+++.++......+ ++|.... ....++..|+|.+++.+.+
T Consensus 76 ~d~~lG~~~~~l~~~~~~~~~~--~~l~~~~---~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 76 CDEFLGQATLSADPNDSQTLRT--LPLRKRG---RDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred CCCceEEEEEecccCCCcCceE--EEcccCC---CCCCCCCCCEEEEEEEEcc
Confidence 4899999999999876554444 4442211 1245789999999998765
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.3e-19 Score=150.91 Aligned_cols=110 Identities=30% Similarity=0.437 Sum_probs=94.7
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCC-CCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEeeC--CCCCEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLL-GASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRD--PESQAVELA 323 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~-g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~ 323 (532)
+....+.|.|+|++|+||+.++.. |.+||||++++.+.. ...++|++++++.||+|||+|.|.+.. .....|.++
T Consensus 10 y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~ 89 (125)
T cd08393 10 YDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLS 89 (125)
T ss_pred EECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEE
Confidence 444568999999999999999875 899999999997543 334699999999999999999999864 235789999
Q ss_pred EEEccCCCCCCeeEEEEEeCccCCCCCCeEEEEec
Q 009539 324 VYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 358 (532)
Q Consensus 324 v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l 358 (532)
|||++..+++++||++.++|.++........|++|
T Consensus 90 V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 90 VWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred EEeCCCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence 99999999999999999999999877777778765
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-18 Score=148.88 Aligned_cols=112 Identities=29% Similarity=0.399 Sum_probs=95.9
Q ss_pred ccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCC--CCCCCCEEEEEEcC-----eeEEE
Q 009539 373 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEG--KHHTNPYARILFRG-----EERKT 445 (532)
Q Consensus 373 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~--~~~~dpyv~v~~~~-----~~~kT 445 (532)
.|+|++++.|. .+.|.|.|++|+||+. .+.+||||++++.+ .++||
T Consensus 1 ~G~l~~~l~y~---------------------------~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT 53 (122)
T cd08381 1 GGQVKLSISYK---------------------------NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKT 53 (122)
T ss_pred CCeEEEEEEEe---------------------------CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeC
Confidence 48999999996 3689999999999976 46899999999963 35699
Q ss_pred eeecCCCCCcccceEEEEe-cCC-CCCCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEe
Q 009539 446 KHVKKNRDPRWEEEFQFML-EEP-PTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHL 515 (532)
Q Consensus 446 ~vv~~t~nP~w~e~f~f~v-~~~-~~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L 515 (532)
++++++.||+|||+|+|.+ ... .....|.++|||++. ++++++||++.++|+++..++....||+|
T Consensus 54 ~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~----~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 54 KVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDS----LVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCC----CcCCcEEEEEEEeccccccCCCccceEEC
Confidence 9999999999999999987 221 134589999999986 57899999999999999887777899997
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-18 Score=149.76 Aligned_cols=110 Identities=27% Similarity=0.479 Sum_probs=95.6
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCC-CCCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDL-LGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELA 323 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~-~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~ 323 (532)
+....|.|.|+|++|+||+..+. .|.+||||++++.+.. ...+||++++++.||+|||+|.|.+... ....|.|+
T Consensus 10 y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~ 89 (125)
T cd04029 10 YDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLS 89 (125)
T ss_pred EECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 45677899999999999998875 4789999999997543 3457999999999999999999998642 35689999
Q ss_pred EEEccCCCCCCeeEEEEEeCccCCCCCCeEEEEec
Q 009539 324 VYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 358 (532)
Q Consensus 324 v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l 358 (532)
|||++..+++++||++.+++.++........|++|
T Consensus 90 V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 90 VWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred EEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 99999999999999999999999988888888876
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.2e-18 Score=145.99 Aligned_cols=115 Identities=22% Similarity=0.369 Sum_probs=98.6
Q ss_pred ceEEEEEEeeeecCCCCCCCCCEEEEEEcCee-EEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCCC
Q 009539 411 GGLLVVIVHEAQDVEGKHHTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 489 (532)
Q Consensus 411 ~g~L~v~i~~a~~L~~~~~~dpyv~v~~~~~~-~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~ 489 (532)
...|+|+|++|+||+..+.+||||++++++.. .||++ +++.||.|||.|.|.+..+ ..+.+.|.|+|++. +++
T Consensus 3 ~~~L~V~Vi~A~~L~~~~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~-~~~~l~v~v~d~~~----~~~ 76 (126)
T cd08400 3 VRSLQLNVLEAHKLPVKHVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPP-DVNSFTISLSNKAK----RSK 76 (126)
T ss_pred eeEEEEEEEEeeCCCCCCCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCC-CcCEEEEEEEECCC----CCC
Confidence 45799999999999998889999999998855 58887 5689999999999987553 33579999999875 578
Q ss_pred CceeEEEEEechhhhccceeceEEEeCCC------CCeEEEEEEEEEe
Q 009539 490 KETLGYIDINLSDVVSNKRINEKYHLIDS------KNGRIQIELQWRT 531 (532)
Q Consensus 490 d~~lG~~~i~L~~l~~~~~~~~~~~L~~~------~~G~i~l~~~w~p 531 (532)
|++||++.++|+++..+...+.||+|... ..|+|+++++|.+
T Consensus 77 d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 77 DSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred CCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 99999999999999888778899999753 2499999999986
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.1e-18 Score=146.58 Aligned_cols=115 Identities=26% Similarity=0.430 Sum_probs=96.8
Q ss_pred EEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCC
Q 009539 255 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHD 334 (532)
Q Consensus 255 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~ 334 (532)
.|.|+|++|+||+.. .+||||++++++.. .+|++++++.||+|||+|.|.+..+....|.++|||++.. +++
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~---~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~ 72 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYK---GSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDD 72 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECCcc---ccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCc
Confidence 389999999999887 68999999998643 5999999999999999999998776678999999999976 799
Q ss_pred eeEEEEEeCccCCCCC-----CeEEEEecccccccCCCCCCccccEEEEEEEEE
Q 009539 335 KMGMNVVPLKELTPEE-----PSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 383 (532)
Q Consensus 335 ~iG~~~i~l~~l~~~~-----~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~ 383 (532)
+||++.++++++.... ....|++|... .+.+.+|+|++++.|-
T Consensus 73 ~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~------~~~~~~G~i~l~~~~~ 120 (121)
T cd08378 73 FLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDK------KGGRVGGELMLAVWFG 120 (121)
T ss_pred eeeeEEEEhHhCcCCCCCCCCCCcceEEccCC------CCCccceEEEEEEEec
Confidence 9999999999987532 24578887442 1257899999999873
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-18 Score=149.28 Aligned_cols=115 Identities=23% Similarity=0.334 Sum_probs=98.0
Q ss_pred ccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC----CCCCCEEEEEEcC-----eeE
Q 009539 373 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK----HHTNPYARILFRG-----EER 443 (532)
Q Consensus 373 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~----~~~dpyv~v~~~~-----~~~ 443 (532)
+|+|++++.|.+. .+.|.|+|++|+||+.. +.+||||++++.. .++
T Consensus 1 ~G~i~~sl~y~~~-------------------------~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~ 55 (125)
T cd08393 1 QGSVQFALDYDPK-------------------------LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKR 55 (125)
T ss_pred CcEEEEEEEEECC-------------------------CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccc
Confidence 5999999999863 67899999999999763 5799999999952 346
Q ss_pred EEeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeC
Q 009539 444 KTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLI 516 (532)
Q Consensus 444 kT~vv~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 516 (532)
||++++++.||+|||.|.|.+..... ...|.++|||++. ++++++||++.++|.++..++....||+|.
T Consensus 56 kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~----~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 56 KTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDS----LGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred cCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCCC----CCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 99999999999999999999864322 3489999999985 678999999999999997777778999984
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.9e-18 Score=149.37 Aligned_cols=116 Identities=26% Similarity=0.368 Sum_probs=98.5
Q ss_pred CccccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC----CCCCCEEEEEEcCe----
Q 009539 370 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK----HHTNPYARILFRGE---- 441 (532)
Q Consensus 370 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~----~~~dpyv~v~~~~~---- 441 (532)
....|+|.+++.|. .|.|.|+|++|+||+.. +.+||||++++...
T Consensus 14 ~~~~G~l~lsl~y~---------------------------~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~ 66 (146)
T cd04028 14 SPSMGDIQLGLYDK---------------------------KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCI 66 (146)
T ss_pred CCCcceEEEEEEeC---------------------------CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccc
Confidence 56789999999983 47899999999999752 57899999999532
Q ss_pred -eEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEE-ccccccCCCCCceeEEEEEechhhhccceeceEEEeCCC
Q 009539 442 -ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCS-VSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS 518 (532)
Q Consensus 442 -~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d-~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 518 (532)
++||++++++.||+|||+|+|.+. . ....|.++||+ ++. ++++++||++.++|+++..+.....||+|...
T Consensus 67 ~k~KT~v~kktlnPvfNE~F~f~v~-l-~~~~L~v~V~~d~~~----~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 67 AKKKTKIARKTLDPLYQQQLVFDVS-P-TGKTLQVIVWGDYGR----MDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred cceeceecCCCCCCccCCeEEEEEc-C-CCCEEEEEEEeCCCC----CCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 569999999999999999999998 2 56689999995 443 57899999999999998767777899999764
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-18 Score=149.32 Aligned_cols=110 Identities=31% Similarity=0.621 Sum_probs=96.9
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYD 326 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d 326 (532)
+....|.|.|+|++|++|+..+..|.+||||++++.+.....++|++++++.||+|||+|.|.+... ....|.++|||
T Consensus 11 y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d 90 (124)
T cd08387 11 YDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYD 90 (124)
T ss_pred ECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEE
Confidence 4556789999999999999999889999999999965444457999999999999999999998643 25689999999
Q ss_pred ccCCCCCCeeEEEEEeCccCCCCCCeEEEEec
Q 009539 327 WEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 358 (532)
Q Consensus 327 ~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l 358 (532)
++..+++++||++.++++++..+.....|++|
T Consensus 91 ~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08387 91 FDQFSRDECIGVVELPLAEVDLSEKLDLWRKI 122 (124)
T ss_pred CCCCCCCceeEEEEEecccccCCCCcceEEEC
Confidence 99999999999999999999987788888876
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.6e-18 Score=144.92 Aligned_cols=112 Identities=21% Similarity=0.399 Sum_probs=99.9
Q ss_pred EEEEEEeeeecCCCC---CCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCCC
Q 009539 413 LLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 489 (532)
Q Consensus 413 ~L~v~i~~a~~L~~~---~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~ 489 (532)
+++|+|++|+||+.. +.+||||+++++++..+|++++++.||.|||.|.|.+... ..+.+.++|||++. ++.
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~~l~v~v~d~~~----~~~ 75 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDD-QSQILEIEVWDKDT----GKK 75 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCC-CCCEEEEEEEECCC----CCC
Confidence 478999999999874 5799999999999999999999999999999999999864 45789999999985 568
Q ss_pred CceeEEEEEechhhhccceeceEEEeCCCCCeEEEEEEEEE
Q 009539 490 KETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQWR 530 (532)
Q Consensus 490 d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~w~ 530 (532)
+++||++.++|+++..+.....||+|.+. .|+|++.+.|.
T Consensus 76 ~~~iG~~~~~l~~l~~~~~~~~w~~L~~~-~G~~~~~~~~~ 115 (116)
T cd08376 76 DEFIGRCEIDLSALPREQTHSLELELEDG-EGSLLLLLTLT 115 (116)
T ss_pred CCeEEEEEEeHHHCCCCCceEEEEEccCC-CcEEEEEEEec
Confidence 99999999999999888888899999764 79999998874
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.2e-18 Score=147.82 Aligned_cols=113 Identities=26% Similarity=0.458 Sum_probs=98.9
Q ss_pred eEEEEEEeeeecCCC-----CCCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccC
Q 009539 412 GLLVVIVHEAQDVEG-----KHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGL 486 (532)
Q Consensus 412 g~L~v~i~~a~~L~~-----~~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~ 486 (532)
|.|+|+|++|+||+. .+.+||||++++++++.+|++++++.||.|||.|+|.+... ..+.|.|+|||++.
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~-~~~~l~i~v~d~~~---- 75 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSA-QNQLLKLILWDKDR---- 75 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCC-CCCEEEEEEEECCC----
Confidence 689999999999975 35789999999999999999999999999999999999873 45789999999985
Q ss_pred CCCCceeEEEEEechhhhc---cceeceEEEeCCC-------CCeEEEEEEEE
Q 009539 487 LHPKETLGYIDINLSDVVS---NKRINEKYHLIDS-------KNGRIQIELQW 529 (532)
Q Consensus 487 ~~~d~~lG~~~i~L~~l~~---~~~~~~~~~L~~~-------~~G~i~l~~~w 529 (532)
++.+++||++.++|.++.. .....+||+|.+. .+|+|+|++.|
T Consensus 76 ~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 76 FAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCCCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 5678999999999999983 3446799999765 37999999998
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.6e-18 Score=145.03 Aligned_cols=113 Identities=23% Similarity=0.405 Sum_probs=99.7
Q ss_pred EEEEEEeeeecCCCC---CCCCCEEEEEEcC-eeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCC
Q 009539 413 LLVVIVHEAQDVEGK---HHTNPYARILFRG-EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLH 488 (532)
Q Consensus 413 ~L~v~i~~a~~L~~~---~~~dpyv~v~~~~-~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~ 488 (532)
.|+|+|++|++|+.. +.+||||++++++ ...+|++++++.||+|||.|.|.+.+. .+.+.++|||++. ++
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~--~~~l~~~v~D~d~----~~ 74 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDV--TQPLYIKVFDYDR----GL 74 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCC--CCeEEEEEEeCCC----CC
Confidence 378999999999863 6899999999988 456999999999999999999998764 4689999999986 56
Q ss_pred CCceeEEEEEechhhhccceeceEEEeCCCC----CeEEEEEEEEEe
Q 009539 489 PKETLGYIDINLSDVVSNKRINEKYHLIDSK----NGRIQIELQWRT 531 (532)
Q Consensus 489 ~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~----~G~i~l~~~w~p 531 (532)
+|++||++.++|+++..+.....|++|.+.+ .|+|.+.+++.|
T Consensus 75 ~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 75 TDDFMGSAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLTP 121 (121)
T ss_pred CCcceEEEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEECC
Confidence 8999999999999999888888999997554 499999999987
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.8e-18 Score=147.97 Aligned_cols=123 Identities=36% Similarity=0.620 Sum_probs=101.6
Q ss_pred EEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc----CCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCC
Q 009539 255 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK----LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQV 330 (532)
Q Consensus 255 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~----~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~ 330 (532)
.|+|+|++|++|+..+..|.+||||++++.+.. ....+|++++++.||.|||+|.|.+... ...|.++|||++..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~ 79 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRL 79 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCC
Confidence 489999999999999988999999999998652 2245899999999999999999998653 57899999999999
Q ss_pred CCCCeeEEEEEeCccCCCCCC------eEEEEecccccccCCCCCCccccEEEEEEEEE
Q 009539 331 GKHDKMGMNVVPLKELTPEEP------SVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 383 (532)
Q Consensus 331 ~~d~~iG~~~i~l~~l~~~~~------~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~ 383 (532)
+++++||++.+++.++..... ...|++|.+. ...++..|+|++++.|.
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPR-----SSKSRVKGHLRLYMAYL 133 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeeeec-----CCCCcceeEEEEEEeeC
Confidence 999999999999999986532 3466666431 11356899999999883
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.6e-18 Score=145.45 Aligned_cols=111 Identities=23% Similarity=0.419 Sum_probs=92.9
Q ss_pred EEEEEEeeeec---CCC---CCCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccc--
Q 009539 413 LLVVIVHEAQD---VEG---KHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRI-- 484 (532)
Q Consensus 413 ~L~v~i~~a~~---L~~---~~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~-- 484 (532)
+|.|+|++|++ |+. .|.+||||++++++++.||++++++.||+|||+|.|.+.+. ...|.++|||++...
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~--~~~l~v~V~d~d~~~~~ 78 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDP--CTVLTVGVFDNSQSHWK 78 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCC--CCEEEEEEEECCCcccc
Confidence 48899999999 654 37899999999999999999999999999999999999864 358999999987510
Q ss_pred cCCCCCceeEEEEEechhhhccceeceEEEeCCC------CCeEEEE
Q 009539 485 GLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS------KNGRIQI 525 (532)
Q Consensus 485 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~------~~G~i~l 525 (532)
+-+.+|++||++.++|+++..+....+||+|.+. +.|+|++
T Consensus 79 ~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 79 EAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred ccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 0013799999999999999988888999999743 3577764
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.3e-18 Score=147.59 Aligned_cols=110 Identities=34% Similarity=0.516 Sum_probs=96.8
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYD 326 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d 326 (532)
+....+.|.|+|++|+||+..+..|.+||||++++.+.....++|++++++.||+|||+|.|.+... ....|.|+|||
T Consensus 11 y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d 90 (124)
T cd08385 11 YDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYD 90 (124)
T ss_pred EeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEe
Confidence 4556789999999999999999889999999999986554567999999999999999999998642 35689999999
Q ss_pred ccCCCCCCeeEEEEEeCccCCCCCCeEEEEec
Q 009539 327 WEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 358 (532)
Q Consensus 327 ~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l 358 (532)
++..+++++||++.++++++..+.....|+++
T Consensus 91 ~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08385 91 FDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDL 122 (124)
T ss_pred CCCCCCCceeEEEEEecCcccCCCCcceEEEc
Confidence 99999999999999999999887777888876
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-17 Score=145.98 Aligned_cols=116 Identities=25% Similarity=0.524 Sum_probs=101.5
Q ss_pred CCceEEEEEEeeeecCCCC---CCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccccc
Q 009539 409 AGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIG 485 (532)
Q Consensus 409 ~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~ 485 (532)
...|.|+|+|++|++|+.. +.+||||+++++++..+|++++++.||.|||.|+|.+.+. ..+.+.++|||++.
T Consensus 12 ~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~-~~~~l~i~V~D~d~--- 87 (136)
T cd08375 12 SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDL-EQDVLCITVFDRDF--- 87 (136)
T ss_pred CCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCc-cCCEEEEEEEECCC---
Confidence 3579999999999999763 6899999999999999999999999999999999999764 45689999999985
Q ss_pred CCCCCceeEEEEEechhhhc-----cceeceEEEeCCCCCeEEEEEEEE
Q 009539 486 LLHPKETLGYIDINLSDVVS-----NKRINEKYHLIDSKNGRIQIELQW 529 (532)
Q Consensus 486 ~~~~d~~lG~~~i~L~~l~~-----~~~~~~~~~L~~~~~G~i~l~~~w 529 (532)
++.|++||++.++|.++.. +....+|.+|.+...|+|++++.+
T Consensus 88 -~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~ 135 (136)
T cd08375 88 -FSPDDFLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDL 135 (136)
T ss_pred -CCCCCeeEEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEe
Confidence 5789999999999999987 334567888877778999999986
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.4e-18 Score=145.14 Aligned_cols=111 Identities=22% Similarity=0.382 Sum_probs=96.7
Q ss_pred EEEEEEeeeecCCCCCCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCCCCce
Q 009539 413 LLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKET 492 (532)
Q Consensus 413 ~L~v~i~~a~~L~~~~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~d~~ 492 (532)
.|.|+|++|+||+.. .+||||+++++++..||++++++.||+|||+|+|.+... ....|.++|||++. + .+++
T Consensus 1 ~L~V~Vi~a~~L~~~-~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~-~~~~L~~~v~d~d~----~-~~~~ 73 (121)
T cd08378 1 YLYVRVVKARGLPAN-SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRL-QGSTLEVSVWDKDK----A-KDDF 73 (121)
T ss_pred CEEEEEEEecCCCcc-cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCC-cCCEEEEEEEeCCC----C-cCce
Confidence 378999999999987 899999999999889999999999999999999998764 45689999999975 3 6899
Q ss_pred eEEEEEechhhhccc-----eeceEEEeCCCC----CeEEEEEEEEE
Q 009539 493 LGYIDINLSDVVSNK-----RINEKYHLIDSK----NGRIQIELQWR 530 (532)
Q Consensus 493 lG~~~i~L~~l~~~~-----~~~~~~~L~~~~----~G~i~l~~~w~ 530 (532)
||++.++|+++..+. ...+||+|.+.. .|+|++++.|-
T Consensus 74 lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~~ 120 (121)
T cd08378 74 LGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWFG 120 (121)
T ss_pred eeeEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEec
Confidence 999999999987643 246899998754 59999999873
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.8e-18 Score=144.18 Aligned_cols=118 Identities=31% Similarity=0.546 Sum_probs=100.0
Q ss_pred EEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCC
Q 009539 254 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKH 333 (532)
Q Consensus 254 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d 333 (532)
|.|.|+|++|++|+..+..+.+||||++++++.. .+|++++++.||.|||+|.|.+.+. .+.+.|+|||++..+++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~---~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~ 76 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNAR---LQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKP 76 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEe---eecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCC
Confidence 6899999999999999988999999999997654 4899999999999999999998654 57899999999988899
Q ss_pred CeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEE
Q 009539 334 DKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 382 (532)
Q Consensus 334 ~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~ 382 (532)
++||++.+++.++..+.. .|+.+... ....+..|+|.+++.+
T Consensus 77 ~~iG~~~~~l~~~~~~~~--~~~~l~~~-----~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 77 EFLGKVAIPLLSIKNGER--KWYALKDK-----KLRTRAKGSILLEMDV 118 (119)
T ss_pred ceeeEEEEEHHHCCCCCc--eEEECccc-----CCCCceeeEEEEEEEe
Confidence 999999999999986644 46665332 1134579999999876
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.6e-18 Score=148.97 Aligned_cols=114 Identities=25% Similarity=0.352 Sum_probs=97.0
Q ss_pred EEEEEEeeeecCCCC---CCCCCEEEEEEcCeeEEEeeecC-CCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCC
Q 009539 413 LLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKK-NRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLH 488 (532)
Q Consensus 413 ~L~v~i~~a~~L~~~---~~~dpyv~v~~~~~~~kT~vv~~-t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~ 488 (532)
.|.|+|++|+||+.. +.+||||+++++++..+|+++.+ +.||+|||.|+|.+.++ ..+.+.++|+|++. ++
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~-~~~~l~v~V~d~~~----~~ 75 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEP-FEDHLILSVEDRVG----PN 75 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCc-cCCeEEEEEEEecC----CC
Confidence 478999999999763 68999999999999999999976 69999999999999764 45689999999875 46
Q ss_pred CCceeEEEEEechhhhcc----ceeceEEEeCCCC-----------CeEEEEEEEEEe
Q 009539 489 PKETLGYIDINLSDVVSN----KRINEKYHLIDSK-----------NGRIQIELQWRT 531 (532)
Q Consensus 489 ~d~~lG~~~i~L~~l~~~----~~~~~~~~L~~~~-----------~G~i~l~~~w~p 531 (532)
+|++||++.++|+++..+ ....+||+|.+.+ +|+|+|++.+.+
T Consensus 76 ~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~ 133 (150)
T cd04019 76 KDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG 133 (150)
T ss_pred CCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence 789999999999998753 3468999998653 399999998754
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.7e-18 Score=144.88 Aligned_cols=95 Identities=31% Similarity=0.508 Sum_probs=84.7
Q ss_pred EEEEEEEEEcCCCCcCCCC-CCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCC---CCCEEEEEEEEccC
Q 009539 254 GILHVKVVKAMNLKKKDLL-GASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP---ESQAVELAVYDWEQ 329 (532)
Q Consensus 254 g~L~V~v~~A~~L~~~d~~-g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~---~~~~L~v~v~d~d~ 329 (532)
|+|+|+|++|++|+..+.. |.+||||++++.+......+|++++++.||+|||+|.|.+... ..+.|.++|||+|.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 7899999999999999987 8999999999975443457999999999999999999987653 35689999999999
Q ss_pred CCCCCeeEEEEEeCccCCC
Q 009539 330 VGKHDKMGMNVVPLKELTP 348 (532)
Q Consensus 330 ~~~d~~iG~~~i~l~~l~~ 348 (532)
.++|++||++.+++.++..
T Consensus 81 ~~~dd~lG~~~i~l~~l~~ 99 (111)
T cd04041 81 FTADDRLGRVEIDLKELIE 99 (111)
T ss_pred CCCCCcceEEEEEHHHHhc
Confidence 9999999999999999983
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.2e-18 Score=146.75 Aligned_cols=110 Identities=26% Similarity=0.421 Sum_probs=92.3
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCC-CCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEE-eeC--CCCCEEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLL-GASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFT-VRD--PESQAVELAV 324 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~-g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~-v~~--~~~~~L~v~v 324 (532)
+....+.|.|+|++|+||+..+.. |.+||||++++.+...+..||++++++.||+|||+|.|. +.. .....|.++|
T Consensus 11 y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V 90 (128)
T cd08388 11 YNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAV 90 (128)
T ss_pred EECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEE
Confidence 455678999999999999998876 889999999998655555799999999999999999993 432 2245799999
Q ss_pred EEccCCCCCCeeEEEEEeCccCCCC--CCeEEEEec
Q 009539 325 YDWEQVGKHDKMGMNVVPLKELTPE--EPSVKTLDL 358 (532)
Q Consensus 325 ~d~d~~~~d~~iG~~~i~l~~l~~~--~~~~~~l~l 358 (532)
||+|..++|++||++.++|+++... .....|+++
T Consensus 91 ~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~ 126 (128)
T cd08388 91 LSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREI 126 (128)
T ss_pred EEcCCCCCCceeEEEEEeccccCCCCCceEEEEEec
Confidence 9999999999999999999999765 455677765
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.76 E-value=6e-18 Score=145.99 Aligned_cols=115 Identities=20% Similarity=0.288 Sum_probs=96.7
Q ss_pred ccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC----CCCCCEEEEEEcC-----eeE
Q 009539 373 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK----HHTNPYARILFRG-----EER 443 (532)
Q Consensus 373 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~----~~~dpyv~v~~~~-----~~~ 443 (532)
.|+|.+++.|.+. .+.|.|+|++|+||+.. +.+||||++++.. .++
T Consensus 1 ~G~i~~sl~Y~~~-------------------------~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~ 55 (128)
T cd08392 1 TGEIEFALHYNFR-------------------------TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKR 55 (128)
T ss_pred CcEEEEEEEEeCC-------------------------CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCccccee
Confidence 4899999999863 67999999999999752 6789999999953 256
Q ss_pred EEeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEccccccCCCCCceeEEEEEechhhhcc---ceeceEEEeC
Q 009539 444 KTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSN---KRINEKYHLI 516 (532)
Q Consensus 444 kT~vv~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~---~~~~~~~~L~ 516 (532)
||++++++.||+|||+|.|.+..... ...|.+.|||.+. ++++++||++.|+|+++... +...+||+|.
T Consensus 56 kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~----~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 56 KTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRT----LKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred ecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCC----CcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 99999999999999999999865323 3489999999975 57899999999999998543 3678999984
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.7e-18 Score=148.44 Aligned_cols=123 Identities=24% Similarity=0.377 Sum_probs=96.7
Q ss_pred EEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEee---------------CCCCC
Q 009539 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVR---------------DPESQ 318 (532)
Q Consensus 256 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~---------------~~~~~ 318 (532)
|.|+|++|+||+. ..|.+||||++++.+.. ...++|+++++|.||+|||+|.|.+. +....
T Consensus 2 L~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T cd04010 2 LSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL 79 (148)
T ss_pred EEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence 7899999999998 45899999999998632 23468999999999999999999985 11235
Q ss_pred EEEEEEEEccCCCCCCeeEEEEEeCccCCCC-CCeEEEEecccccccCC-----CCCCccccEEEEEE
Q 009539 319 AVELAVYDWEQVGKHDKMGMNVVPLKELTPE-EPSVKTLDLLKNMDLND-----GQNEKSRGQLVVEF 380 (532)
Q Consensus 319 ~L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~-~~~~~~l~l~~~~~~~~-----~~~~~~~G~l~l~l 380 (532)
.|.|.|||++..++|++||++.+++.++..+ .....|++|.+.....+ ..+....|.|++.+
T Consensus 80 ~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T cd04010 80 ELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLKI 147 (148)
T ss_pred EEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcccccCCCCCcccccCCcccEEEec
Confidence 7999999999888999999999999999987 56678888855433221 12234567777654
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.7e-18 Score=144.38 Aligned_cols=102 Identities=26% Similarity=0.373 Sum_probs=86.2
Q ss_pred ceEEEEEEeeeecCCCC--CCCCCEEEEEEcC-----eeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccc
Q 009539 411 GGLLVVIVHEAQDVEGK--HHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSR 483 (532)
Q Consensus 411 ~g~L~v~i~~a~~L~~~--~~~dpyv~v~~~~-----~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~ 483 (532)
.+.|.|+|++|+||+.. +.+||||++++.. .++||++++++.||+|||+|.|.+........+.++|||++..
T Consensus 11 ~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~ 90 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSK 90 (119)
T ss_pred CCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCC
Confidence 57899999999999764 6789999999964 2559999999999999999999987543445799999998752
Q ss_pred ccCCCCCceeEEEEEechhhhccceeceEEEe
Q 009539 484 IGLLHPKETLGYIDINLSDVVSNKRINEKYHL 515 (532)
Q Consensus 484 ~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L 515 (532)
..++++||++.++|.++..++...+||.|
T Consensus 91 ---~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 91 ---SRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred ---cCCCEEEEEEEecHHHhccCccccceEeC
Confidence 23578999999999999877778999986
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-17 Score=145.15 Aligned_cols=116 Identities=28% Similarity=0.482 Sum_probs=100.9
Q ss_pred eEEEEEEEEEcCCCCcCCCC----------CCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEE
Q 009539 253 VGILHVKVVKAMNLKKKDLL----------GASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVEL 322 (532)
Q Consensus 253 ~g~L~V~v~~A~~L~~~d~~----------g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v 322 (532)
.|.|+|+|++|++|+..+.. |.+||||++.++++.. .+|+++.++.||.|||+|.|.+.+ ...|.|
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~--~kT~~~~~t~~P~Wne~f~~~v~~--~~~l~~ 78 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHI--GKTSTKPKTNSPVWNEEFTTEVHN--GRNLEL 78 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEE--eEEeEcCCCCCCCcceeEEEEcCC--CCEEEE
Confidence 58999999999999988862 5789999999986543 589999999999999999999963 578999
Q ss_pred EEEEccCCCCCCeeEEEEEeCccCCC--CCCeEEEEecccccccCCCCCCccccEEEEEEEEEE
Q 009539 323 AVYDWEQVGKHDKMGMNVVPLKELTP--EEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 384 (532)
Q Consensus 323 ~v~d~d~~~~d~~iG~~~i~l~~l~~--~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p 384 (532)
.|||++..+++++||++.++|.++.. +...+.|++|. ..|+|+++++|..
T Consensus 79 ~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~------------~~G~l~l~~~~~~ 130 (132)
T cd04014 79 TVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE------------PQGKLHVKIELKG 130 (132)
T ss_pred EEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc------------CCcEEEEEEEEec
Confidence 99999988899999999999999987 56678888872 4699999999874
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.2e-18 Score=145.63 Aligned_cols=110 Identities=16% Similarity=0.197 Sum_probs=93.1
Q ss_pred cCCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc---CCceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEE
Q 009539 248 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK---LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVEL 322 (532)
Q Consensus 248 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~---~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v 322 (532)
.|+...+.|.|+|++|+||+..+..|.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ....|.+
T Consensus 8 ~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~ 87 (124)
T cd08680 8 RYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQV 87 (124)
T ss_pred EECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEE
Confidence 3556778999999999999999888899999999998755 2467999999999999999999998643 3679999
Q ss_pred EEEEccCCCCCCeeEEEEEeCccCCCCC-CeEEEEe
Q 009539 323 AVYDWEQVGKHDKMGMNVVPLKELTPEE-PSVKTLD 357 (532)
Q Consensus 323 ~v~d~d~~~~d~~iG~~~i~l~~l~~~~-~~~~~l~ 357 (532)
+|||++..+++++||++.++|.++.... ....|+.
T Consensus 88 ~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~ 123 (124)
T cd08680 88 DVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYN 123 (124)
T ss_pred EEEeCCCCCceeEEEEEEEEhhhccCCCcccccccc
Confidence 9999999999999999999999996543 3444543
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-17 Score=143.05 Aligned_cols=118 Identities=33% Similarity=0.461 Sum_probs=100.4
Q ss_pred EEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCC
Q 009539 255 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHD 334 (532)
Q Consensus 255 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~ 334 (532)
.|+|+|++|++|+..+..|.+||||++.+.+.....++|++++++.||.|||+|.|.+.....+.|.|+|||++..++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 58999999999999998899999999998754334569999999999999999999997755689999999999888999
Q ss_pred eeEEEEEeCccCCC---CCCeEEEEecccccccCCCCCCccccEEEEEEEEEE
Q 009539 335 KMGMNVVPLKELTP---EEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 384 (532)
Q Consensus 335 ~iG~~~i~l~~l~~---~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p 384 (532)
+||++.+++.++.. +.....|+++. ..|++++.+.+.-
T Consensus 82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~------------~~g~i~l~~~~~~ 122 (126)
T cd04043 82 LCGRASLKLDPKRFGDDGLPREIWLDLD------------TQGRLLLRVSMEG 122 (126)
T ss_pred eEEEEEEecCHHHcCCCCCCceEEEEcC------------CCCeEEEEEEEee
Confidence 99999999987643 34567888872 3689999988864
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.7e-17 Score=142.34 Aligned_cols=118 Identities=25% Similarity=0.441 Sum_probs=99.2
Q ss_pred EEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCCe
Q 009539 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDK 335 (532)
Q Consensus 256 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~ 335 (532)
|.|+|++|++|+..+..|.+||||++.+++.. ..+|++++++.||+|||.|.|.+... .+.|.|+|||++..++|++
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~--~~kT~v~~~t~nP~Wne~f~~~~~~~-~~~l~v~v~d~~~~~~d~~ 78 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEV--IIRTATVWKTLNPFWGEEYTVHLPPG-FHTVSFYVLDEDTLSRDDV 78 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEe--eeeeeeEcCCCCCcccceEEEeeCCC-CCEEEEEEEECCCCCCCCE
Confidence 78999999999999999999999999997643 35999999999999999999998653 4799999999999999999
Q ss_pred eEEEEEeCccCCCC-CCeEEEEecccccccCCCCCCccccEEEEEEE
Q 009539 336 MGMNVVPLKELTPE-EPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFI 381 (532)
Q Consensus 336 iG~~~i~l~~l~~~-~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~ 381 (532)
||++.++++++... ...+.|++|.+. ..+....|+|++.++
T Consensus 79 iG~~~~~~~~~~~~~~~~~~W~~L~~~-----~~~~~~~G~i~l~~~ 120 (121)
T cd04054 79 IGKVSLTREVISAHPRGIDGWMNLTEV-----DPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEEEcHHHhccCCCCCCcEEECeee-----CCCCccccEEEEEEE
Confidence 99999999988754 236678887432 123557899998874
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-17 Score=144.19 Aligned_cols=116 Identities=20% Similarity=0.400 Sum_probs=99.5
Q ss_pred cccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEc---CeeEEE
Q 009539 372 SRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR---GEERKT 445 (532)
Q Consensus 372 ~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~---~~~~kT 445 (532)
.+|+|++++.|.|. .|.|.|+|++|+||+.. +.+||||++++. .+.++|
T Consensus 1 ~~G~l~~sl~y~~~-------------------------~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT 55 (124)
T cd08387 1 TRGELHFSLEYDKD-------------------------MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQS 55 (124)
T ss_pred CCCEEEEEEEECCC-------------------------CCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeC
Confidence 37999999999863 68999999999999863 679999999994 335799
Q ss_pred eeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeC
Q 009539 446 KHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLI 516 (532)
Q Consensus 446 ~vv~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 516 (532)
++++++.||+|||.|.|.+..... ...|.++|||++. ++++++||++.++|+++..++..+.||+|.
T Consensus 56 ~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~----~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 56 KIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQ----FSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred ceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCC----CCCCceeEEEEEecccccCCCCcceEEECc
Confidence 999999999999999999875322 3479999999975 678999999999999998777889999985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-17 Score=142.26 Aligned_cols=110 Identities=19% Similarity=0.401 Sum_probs=96.8
Q ss_pred EEEEEeeeecCCCC---CCCCCEEEEEEcC---eeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCC
Q 009539 414 LVVIVHEAQDVEGK---HHTNPYARILFRG---EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 487 (532)
Q Consensus 414 L~v~i~~a~~L~~~---~~~dpyv~v~~~~---~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~ 487 (532)
|+|+|++|++|+.. +.+||||++++++ ..++|++++++.||+|||+|+|.+... ..+.|.|+|||++. +
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~-~~~~l~v~v~d~d~----~ 76 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQ-VKNVLELTVMDEDY----V 76 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcc-cCCEEEEEEEECCC----C
Confidence 78999999999864 5799999999964 456999999999999999999999764 44579999999975 4
Q ss_pred CCCceeEEEEEechhhhccceeceEEEeCCCCCeEEEEEEEE
Q 009539 488 HPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQW 529 (532)
Q Consensus 488 ~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~w 529 (532)
+|++||++.++++++..+.....||+|...+.|++++++.+
T Consensus 77 -~~~~iG~~~~~l~~l~~g~~~~~~~~L~~~~~g~l~~~~~~ 117 (119)
T cd04036 77 -MDDHLGTVLFDVSKLKLGEKVRVTFSLNPQGKEELEVEFLL 117 (119)
T ss_pred -CCcccEEEEEEHHHCCCCCcEEEEEECCCCCCceEEEEEEe
Confidence 78999999999999988888899999998888999988865
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-17 Score=144.34 Aligned_cols=114 Identities=25% Similarity=0.423 Sum_probs=96.8
Q ss_pred EEEEEEeeeecCCC---CCCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCCC--CCeEEEEEEEccccccCC
Q 009539 413 LLVVIVHEAQDVEG---KHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPT--NDRLHVEVCSVSSRIGLL 487 (532)
Q Consensus 413 ~L~v~i~~a~~L~~---~~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~--~~~l~v~V~d~~~~~~~~ 487 (532)
.|+|+|++|++|+. .+.+||||++++++++++|++++++.||+|||.|.|.+..+.. ...|.++|||++. +
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~----~ 76 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR----S 76 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCC----C
Confidence 37899999999975 3679999999999999999999999999999999999976421 2479999999875 4
Q ss_pred C-CCceeEEEEEechhhh-ccceeceEEEeCCC-----CCeEEEEEEEEE
Q 009539 488 H-PKETLGYIDINLSDVV-SNKRINEKYHLIDS-----KNGRIQIELQWR 530 (532)
Q Consensus 488 ~-~d~~lG~~~i~L~~l~-~~~~~~~~~~L~~~-----~~G~i~l~~~w~ 530 (532)
+ .+++||++.++++++. .+....+||+|... .+|+|.|++.+.
T Consensus 77 ~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 77 GRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred cCCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 4 7899999999999998 35566899999754 379999998764
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.3e-18 Score=145.47 Aligned_cols=110 Identities=25% Similarity=0.376 Sum_probs=91.9
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCC-CCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLL-GASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELA 323 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~-g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~ 323 (532)
+....+.|.|+|++|+||+.++.. |.+||||++++.+.. ..++||++++++.||+|||+|.|.+... ....|.+.
T Consensus 10 Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~ 89 (128)
T cd08392 10 YNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVS 89 (128)
T ss_pred EeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEE
Confidence 455678999999999999999875 899999999998654 3356999999999999999999998643 25699999
Q ss_pred EEEccCCCCCCeeEEEEEeCccCCCCC---CeEEEEec
Q 009539 324 VYDWEQVGKHDKMGMNVVPLKELTPEE---PSVKTLDL 358 (532)
Q Consensus 324 v~d~d~~~~d~~iG~~~i~l~~l~~~~---~~~~~l~l 358 (532)
|||.+..+++++||++.|+|+++.... ....|++|
T Consensus 90 V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 90 VWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred EEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 999999999999999999999996543 33455554
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.7e-17 Score=143.92 Aligned_cols=120 Identities=25% Similarity=0.450 Sum_probs=99.0
Q ss_pred EEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCC---------CCCEEEEEEE
Q 009539 255 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP---------ESQAVELAVY 325 (532)
Q Consensus 255 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~---------~~~~L~v~v~ 325 (532)
.|+|+|++|++|+.+|..|.+||||++++++.. ++|+++++|.||+|||+|.|.+... ....|.++||
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~---~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~ 78 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQS---QETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELF 78 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCee---eEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEE
Confidence 589999999999999999999999999997543 5899999999999999999975432 1257999999
Q ss_pred EccCCCCCCeeEEEEE-eCccCCC---CCCeEEEEecccccccCCCCCCccccEEEEEEEEEEc
Q 009539 326 DWEQVGKHDKMGMNVV-PLKELTP---EEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF 385 (532)
Q Consensus 326 d~d~~~~d~~iG~~~i-~l~~l~~---~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 385 (532)
|+|..++|++||++.+ ++..+.. ......|++|.+ .+...|+|.+++++.+.
T Consensus 79 d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~--------~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 79 DQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYK--------GGQSAGELLAAFELIEV 134 (135)
T ss_pred eCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeec--------CCCchhheeEEeEEEEe
Confidence 9999999999999987 4444442 356678888743 25689999999999874
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.1e-17 Score=141.03 Aligned_cols=113 Identities=20% Similarity=0.346 Sum_probs=97.7
Q ss_pred EEEEEeeeecCCC-CCCCCCEEEEEEcC--eeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCCCC
Q 009539 414 LVVIVHEAQDVEG-KHHTNPYARILFRG--EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPK 490 (532)
Q Consensus 414 L~v~i~~a~~L~~-~~~~dpyv~v~~~~--~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~d 490 (532)
|.|+|++|+||+. .+.+||||++++++ ++++|++++++.||+|||.|.|.+.. ....+.|+|||++. .++|
T Consensus 1 l~v~v~~A~~L~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~--~~~~l~~~v~d~~~----~~~~ 74 (126)
T cd08678 1 LLVKNIKANGLSEAAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSP--NSKELLFEVYDNGK----KSDS 74 (126)
T ss_pred CEEEEEEecCCCCCCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCC--CCCEEEEEEEECCC----CCCC
Confidence 5789999999976 35899999999974 56799999999999999999999964 35689999999986 4679
Q ss_pred ceeEEEEEechhhhccceeceEEEeCCC------CCeEEEEEEEEEeC
Q 009539 491 ETLGYIDINLSDVVSNKRINEKYHLIDS------KNGRIQIELQWRTA 532 (532)
Q Consensus 491 ~~lG~~~i~L~~l~~~~~~~~~~~L~~~------~~G~i~l~~~w~p~ 532 (532)
++||++.++++++.......+||+|... ..|+|++++.|.+.
T Consensus 75 ~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 75 KFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred ceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence 9999999999999987777899999744 37999999999763
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-17 Score=143.53 Aligned_cols=110 Identities=35% Similarity=0.547 Sum_probs=95.2
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeC---CCCCEEEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD---PESQAVELAVY 325 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~---~~~~~L~v~v~ 325 (532)
+....+.|.|+|++|++|+..+..|.+||||++++.+......+|++++++.||+|||+|.|.+.. .....|.++||
T Consensus 11 y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~ 90 (125)
T cd08386 11 YDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVL 90 (125)
T ss_pred ECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEE
Confidence 455678999999999999999988999999999996544445799999999999999999997532 23468999999
Q ss_pred EccCCCCCCeeEEEEEeCccCCCCCCeEEEEec
Q 009539 326 DWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 358 (532)
Q Consensus 326 d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l 358 (532)
|++..+++++||++.++++++..+.....|+.|
T Consensus 91 d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l 123 (125)
T cd08386 91 DYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDL 123 (125)
T ss_pred eCCCCcCCcEeeEEEEecccccCCCCcceEEec
Confidence 999999999999999999999988888888876
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.2e-18 Score=140.38 Aligned_cols=94 Identities=20% Similarity=0.344 Sum_probs=81.9
Q ss_pred EEEEEEEEEcCCCCcCCCC----CCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCC-CCEEEEEEEEcc
Q 009539 254 GILHVKVVKAMNLKKKDLL----GASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE-SQAVELAVYDWE 328 (532)
Q Consensus 254 g~L~V~v~~A~~L~~~d~~----g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~L~v~v~d~d 328 (532)
|+|.|+|++|++|+..+.. +.+||||+++++++. +||++++++.||+|||+|.|.+.+.. ...|.|+|||++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~---~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d 77 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRV---FRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKD 77 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEe---EeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECC
Confidence 7899999999999987642 358999999997543 58999999999999999999986543 458999999999
Q ss_pred CCCCCCeeEEEEEeCccCCCCC
Q 009539 329 QVGKHDKMGMNVVPLKELTPEE 350 (532)
Q Consensus 329 ~~~~d~~iG~~~i~l~~l~~~~ 350 (532)
..++|++||++.++|+++..+.
T Consensus 78 ~~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 78 KFSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCCCCcceEEEEEEHHHHHhhC
Confidence 9999999999999999998664
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.6e-17 Score=141.72 Aligned_cols=117 Identities=31% Similarity=0.488 Sum_probs=100.3
Q ss_pred EEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEEEEEEccCCCCCCeeE
Q 009539 260 VVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYDWEQVGKHDKMG 337 (532)
Q Consensus 260 v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d~d~~~~d~~iG 337 (532)
|++|++|+. ..|.+||||++++++.. ++|++++++.||+|||+|.|.+... ..+.|.++|||++..++|++||
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~---~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG 76 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVK---KKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIG 76 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEe---eecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEE
Confidence 689999998 67899999999997654 4899999999999999999999754 4689999999999988999999
Q ss_pred EEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEEccC
Q 009539 338 MNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKE 387 (532)
Q Consensus 338 ~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~ 387 (532)
++.++++++..+.....|++|... ++....|+|+++++|.|...
T Consensus 77 ~~~~~l~~l~~~~~~~~~~~L~~~------~~~~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 77 SATVSLQDLVSEGLLEVTEPLLDS------NGRPTGATISLEVSYQPPDG 120 (127)
T ss_pred EEEEEhhHcccCCceEEEEeCcCC------CCCcccEEEEEEEEEeCCCC
Confidence 999999999988888888888432 12345799999999998643
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.8e-17 Score=141.39 Aligned_cols=118 Identities=28% Similarity=0.502 Sum_probs=96.1
Q ss_pred EEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCC--C
Q 009539 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGK--H 333 (532)
Q Consensus 256 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~--d 333 (532)
|+|+|++|++|+..+..|.+||||++++++. ..++|++++++.||.|||+|.|.+.. .+.|.++|||++..++ |
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~--~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d 77 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGG--QTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQ 77 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCc--cceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCC
Confidence 7899999999999998899999999999753 24699999999999999999999965 6899999999998765 5
Q ss_pred CeeEEEEEeCccCCCCC-CeEEEEecccccccCCCCCCccccEEEEEE
Q 009539 334 DKMGMNVVPLKELTPEE-PSVKTLDLLKNMDLNDGQNEKSRGQLVVEF 380 (532)
Q Consensus 334 ~~iG~~~i~l~~l~~~~-~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l 380 (532)
++||++.+++.++.... ....|+++.+. .. ...+...|+|.+++
T Consensus 78 ~~lG~~~i~l~~l~~~~~~~~~~~~l~~~-~~--~~~~~~~G~v~~~~ 122 (123)
T cd08382 78 GFLGCVRIRANAVLPLKDTGYQRLDLRKL-KK--SDNLSVRGKIVVSL 122 (123)
T ss_pred ceEeEEEEEHHHccccCCCccceeEeecC-CC--CCCceEeeEEEEEe
Confidence 79999999999997654 33567766332 11 12456689988876
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.7e-17 Score=141.89 Aligned_cols=115 Identities=21% Similarity=0.288 Sum_probs=98.7
Q ss_pred ccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEcC---eeEEEe
Q 009539 373 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG---EERKTK 446 (532)
Q Consensus 373 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~---~~~kT~ 446 (532)
.|+|.+++.|.+. .+.|.|+|++|+||+.. +.+||||++++.+ +.++|+
T Consensus 2 ~G~l~~~l~y~~~-------------------------~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~ 56 (124)
T cd08385 2 LGKLQFSLDYDFQ-------------------------SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETK 56 (124)
T ss_pred ccEEEEEEEEeCC-------------------------CCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecc
Confidence 6999999999863 68999999999999863 5799999999853 356999
Q ss_pred eecCCCCCcccceEEEEecCCCC-CCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeC
Q 009539 447 HVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLI 516 (532)
Q Consensus 447 vv~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 516 (532)
+++++.||+|||.|.|.+..... ...|.++|||++. ++.+++||++.++|+++..+....+||+|.
T Consensus 57 v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~----~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 57 VHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDR----FSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred cCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCC----CCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 99999999999999999865322 3589999999975 578999999999999997777788999985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.3e-17 Score=140.37 Aligned_cols=112 Identities=21% Similarity=0.392 Sum_probs=98.0
Q ss_pred ceEEEEEEeeeecCCCC-------------CCCCCEEEEEEcCee-EEEeeecCCCCCcccceEEEEecCCCCCCeEEEE
Q 009539 411 GGLLVVIVHEAQDVEGK-------------HHTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVE 476 (532)
Q Consensus 411 ~g~L~v~i~~a~~L~~~-------------~~~dpyv~v~~~~~~-~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~ 476 (532)
.|.|+|+|++|++|... +.+||||+++++++. .+|++++++.||.|||+|+|.+.+ ...+.+.
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~---~~~l~~~ 79 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN---GRNLELT 79 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC---CCEEEEE
Confidence 68999999999999752 358999999999876 599999999999999999999964 3689999
Q ss_pred EEEccccccCCCCCceeEEEEEechhhhc--cceeceEEEeCCCCCeEEEEEEEEEe
Q 009539 477 VCSVSSRIGLLHPKETLGYIDINLSDVVS--NKRINEKYHLIDSKNGRIQIELQWRT 531 (532)
Q Consensus 477 V~d~~~~~~~~~~d~~lG~~~i~L~~l~~--~~~~~~~~~L~~~~~G~i~l~~~w~p 531 (532)
|+|++. ++.+++||++.++|+++.. +.....||+|. ++|+|+|++.|+.
T Consensus 80 v~d~~~----~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--~~G~l~l~~~~~~ 130 (132)
T cd04014 80 VFHDAA----IGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--PQGKLHVKIELKG 130 (132)
T ss_pred EEeCCC----CCCCceEEEEEEEhHHhcccCCCcccEEEEcc--CCcEEEEEEEEec
Confidence 999875 5678999999999999987 45678999997 5899999999985
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-17 Score=142.56 Aligned_cols=110 Identities=32% Similarity=0.430 Sum_probs=95.9
Q ss_pred cCCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEE-eeC--CCCCEEEEEE
Q 009539 248 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFT-VRD--PESQAVELAV 324 (532)
Q Consensus 248 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~-v~~--~~~~~L~v~v 324 (532)
.+....+.|.|+|++|+||+..+..|.+||||++.+.+.....++|+++++ .||+|||+|.|. +.. .....|.++|
T Consensus 10 ~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V 88 (124)
T cd08389 10 EYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRL 88 (124)
T ss_pred EECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEE
Confidence 355667899999999999999998889999999998766555679999888 999999999998 542 2367899999
Q ss_pred EEccCCCCCCeeEEEEEeCccCCCCCCeEEEEec
Q 009539 325 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 358 (532)
Q Consensus 325 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l 358 (532)
||++..+++++||++.++|+++..+.....|++|
T Consensus 89 ~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L 122 (124)
T cd08389 89 YGVERMRKERLIGEKVVPLSQLNLEGETTVWLTL 122 (124)
T ss_pred EECCCcccCceEEEEEEeccccCCCCCceEEEeC
Confidence 9999999999999999999999888888888876
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.9e-17 Score=142.31 Aligned_cols=118 Identities=27% Similarity=0.407 Sum_probs=99.0
Q ss_pred cccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEc-----CeeE
Q 009539 372 SRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR-----GEER 443 (532)
Q Consensus 372 ~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~-----~~~~ 443 (532)
+.|+|.+++.|.+. .+.|.|+|++|+||+.. +.+||||++++. ..++
T Consensus 1 ~~G~l~~~l~y~~~-------------------------~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~ 55 (127)
T cd04030 1 PLGRIQLTIRYSSQ-------------------------RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRR 55 (127)
T ss_pred CCeEEEEEEEEeCC-------------------------CCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceE
Confidence 47999999999863 68999999999999863 689999999995 3467
Q ss_pred EEeeecCCCCCcccceEEEEecCCC-CCCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeC
Q 009539 444 KTKHVKKNRDPRWEEEFQFMLEEPP-TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLI 516 (532)
Q Consensus 444 kT~vv~~t~nP~w~e~f~f~v~~~~-~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 516 (532)
||++++++.||+|||+|.|.+.... ....+.+.|||++... .+.+++||++.++|.++..++....||+|.
T Consensus 56 kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~~~--~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 56 KTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSFL--SREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred ecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCccc--CCCCceEEEEEEecccccccCCccceEECc
Confidence 9999999999999999999986432 2358999999987510 157899999999999998777788999984
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.9e-17 Score=137.80 Aligned_cols=97 Identities=23% Similarity=0.293 Sum_probs=85.9
Q ss_pred eEEEEEEeeeecCCCCCCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCCCCc
Q 009539 412 GLLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKE 491 (532)
Q Consensus 412 g~L~v~i~~a~~L~~~~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~d~ 491 (532)
+.|.|+|++|++|+..+..||||++.+++++.+|+++++ .||.|||.|.|.+.+. ++.|.|+|||++. ..|+
T Consensus 2 ~~L~V~Vv~Ar~L~~~~~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~--~~~L~v~V~dkd~-----~~DD 73 (127)
T cd08394 2 SLLCVLVKKAKLDGAPDKFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRL--DLGLVIELWNKGL-----IWDT 73 (127)
T ss_pred ceEEEEEEEeeCCCCCCCCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCC--CCEEEEEEEeCCC-----cCCC
Confidence 689999999999998888899999999998889999988 5999999999999764 3459999999873 3899
Q ss_pred eeEEEEEechhhhcccee--ceEEEeC
Q 009539 492 TLGYIDINLSDVVSNKRI--NEKYHLI 516 (532)
Q Consensus 492 ~lG~~~i~L~~l~~~~~~--~~~~~L~ 516 (532)
+||++.++|+++..+... .+||+|.
T Consensus 74 ~lG~v~i~L~~v~~~~~~~~~~Wy~L~ 100 (127)
T cd08394 74 LVGTVWIPLSTIRQSNEEGPGEWLTLD 100 (127)
T ss_pred ceEEEEEEhHHcccCCCCCCCccEecC
Confidence 999999999999876543 7999996
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.73 E-value=7e-17 Score=138.23 Aligned_cols=110 Identities=20% Similarity=0.310 Sum_probs=94.9
Q ss_pred EEEEEeeeecCCCC----CCCCCEEEEEEcCe-eEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCC
Q 009539 414 LVVIVHEAQDVEGK----HHTNPYARILFRGE-ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLH 488 (532)
Q Consensus 414 L~v~i~~a~~L~~~----~~~dpyv~v~~~~~-~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~ 488 (532)
|.|.|.+|+||+.. +.+||||+++++++ ..||+++++|.||.|||+|+|.+.+. ...+.+.|||++. ++
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~--~~~l~~~v~d~~~----~~ 75 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRT--FRHLSFYIYDRDV----LR 75 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCC--CCEEEEEEEECCC----CC
Confidence 67899999999863 47899999999776 46999999999999999999999753 3589999999985 67
Q ss_pred CCceeEEEEEechhhhccceeceEEEeCCC-----CCeEEEEEEEE
Q 009539 489 PKETLGYIDINLSDVVSNKRINEKYHLIDS-----KNGRIQIELQW 529 (532)
Q Consensus 489 ~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~-----~~G~i~l~~~w 529 (532)
+|++||++.++++++..+...+.||+|... ..|+|+|++.+
T Consensus 76 ~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 76 RDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred CCceEEEEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 899999999999999887777899999742 26999998864
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.7e-17 Score=141.24 Aligned_cols=114 Identities=25% Similarity=0.444 Sum_probs=94.4
Q ss_pred ccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEcC-----eeEE
Q 009539 373 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERK 444 (532)
Q Consensus 373 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~-----~~~k 444 (532)
.|+|++++.|.+. .+.|.|+|++|+||+.. +.+||||++++.+ ..+|
T Consensus 2 ~G~l~~~l~~~~~-------------------------~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~k 56 (125)
T cd04031 2 TGRIQIQLWYDKV-------------------------TSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRR 56 (125)
T ss_pred cEEEEEEEEEeCC-------------------------CCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCcccccc
Confidence 6999999999863 68999999999999763 5799999999965 4569
Q ss_pred EeeecCCCCCcccceEEEEecCCC--CCCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeC
Q 009539 445 TKHVKKNRDPRWEEEFQFMLEEPP--TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLI 516 (532)
Q Consensus 445 T~vv~~t~nP~w~e~f~f~v~~~~--~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 516 (532)
|++++++.||+|||.|.|.+.... ....|.++|||++. ++.+++||++.++|++.. .....+||+|+
T Consensus 57 T~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~----~~~~~~iG~~~i~l~~~~-~~~~~~W~~L~ 125 (125)
T cd04031 57 TKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDR----DGENDFLGEVVIDLADAL-LDDEPHWYPLQ 125 (125)
T ss_pred ccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCC----CCCCcEeeEEEEeccccc-ccCCcceEECc
Confidence 999999999999999999864321 23589999999985 567999999999999933 33346899984
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.3e-17 Score=139.66 Aligned_cols=105 Identities=26% Similarity=0.390 Sum_probs=87.9
Q ss_pred ccCCCCCc-cCCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeC-CCC
Q 009539 240 VPILDPSK-AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD-PES 317 (532)
Q Consensus 240 ~~l~~~~~-~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~-~~~ 317 (532)
-|++++.. ......|.|+|+|++|++|+. +..|.+||||++++++. .++|++++++.||+|||+|.|.... ...
T Consensus 13 ~~~~~~~~~~~~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~---~~kT~vi~~t~nPvWNE~F~f~~~~~~~~ 88 (127)
T cd04032 13 SPNVNSNCCPTRRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQ---EKRTEVIWNNNNPRWNATFDFGSVELSPG 88 (127)
T ss_pred CCCcCCCcCcCcCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCc---cccCceecCCCCCcCCCEEEEecccCCCC
Confidence 34554443 346678999999999999984 66788999999999865 3599999999999999999997533 346
Q ss_pred CEEEEEEEEccCCCCCCeeEEEEEeCccCCC
Q 009539 318 QAVELAVYDWEQVGKHDKMGMNVVPLKELTP 348 (532)
Q Consensus 318 ~~L~v~v~d~d~~~~d~~iG~~~i~l~~l~~ 348 (532)
+.|+|+|||++..++|++||++.+++.....
T Consensus 89 ~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 89 GKLRFEVWDRDNGWDDDLLGTCSVVPEAGVH 119 (127)
T ss_pred CEEEEEEEeCCCCCCCCeeEEEEEEecCCce
Confidence 8999999999999999999999999997764
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.5e-17 Score=146.47 Aligned_cols=128 Identities=23% Similarity=0.330 Sum_probs=101.3
Q ss_pred ccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEc-----CeeEE
Q 009539 373 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR-----GEERK 444 (532)
Q Consensus 373 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~-----~~~~k 444 (532)
+|+|.++++|.|...+.. +.......|.|.|+|++|+||+.. +.+||||++++. ...+|
T Consensus 1 ~G~l~~~l~y~~~~~~~~-------------~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~k 67 (162)
T cd04020 1 RGELKVALKYVPPESEGA-------------LKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQK 67 (162)
T ss_pred CceEEEEEEecCcccccc-------------ccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCccee
Confidence 599999999999754321 122334689999999999999864 579999999983 24579
Q ss_pred EeeecCCCCCcccceEEEEecCC-C-CCCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCC
Q 009539 445 TKHVKKNRDPRWEEEFQFMLEEP-P-TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLID 517 (532)
Q Consensus 445 T~vv~~t~nP~w~e~f~f~v~~~-~-~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~ 517 (532)
|++++++.||.|||.|.|.+... . .+..|.|+|||++. ++++++||++.++++++........||.+.+
T Consensus 68 T~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~----~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~ 138 (162)
T cd04020 68 TPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDK----LSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG 138 (162)
T ss_pred CCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCC----CCCCceEEEEEEeCCccccCCCccccccCCh
Confidence 99999999999999999986422 1 23479999999986 5789999999999999876666677777753
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.3e-17 Score=142.12 Aligned_cols=110 Identities=27% Similarity=0.479 Sum_probs=93.5
Q ss_pred CCCCeEEEEEEEEEcCCCCcCC-CCCCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKD-LLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELA 323 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d-~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~ 323 (532)
++...+.|.|+|++|+||+..+ ..|.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ....|.++
T Consensus 9 y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~ 88 (123)
T cd08521 9 YNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLS 88 (123)
T ss_pred EeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEE
Confidence 4556789999999999999988 67899999999996442 2357999999999999999999998643 25689999
Q ss_pred EEEccCCCCCCeeEEEEEeCccCCCCCCeEEEEec
Q 009539 324 VYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 358 (532)
Q Consensus 324 v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l 358 (532)
|||++..+++++||++.++++++..+.....|++|
T Consensus 89 v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 89 VWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 99999999999999999999999776666777654
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.5e-17 Score=136.03 Aligned_cols=98 Identities=26% Similarity=0.537 Sum_probs=86.9
Q ss_pred EEEEEEeeeecCCCC---CCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCCC
Q 009539 413 LLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 489 (532)
Q Consensus 413 ~L~v~i~~a~~L~~~---~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~ 489 (532)
.|.|+|++|+||+.. +.+||||+++++++.++|++++++.||+|||.|+|.+.++ ..+.+.|+|+|++.
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~~l~v~v~d~~~------- 72 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNP-ENQELEIEVKDDKT------- 72 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCC-CCCEEEEEEEECCC-------
Confidence 378999999999863 6899999999999999999999999999999999999875 45689999999862
Q ss_pred CceeEEEEEechhhhccc--eeceEEEeCCC
Q 009539 490 KETLGYIDINLSDVVSNK--RINEKYHLIDS 518 (532)
Q Consensus 490 d~~lG~~~i~L~~l~~~~--~~~~~~~L~~~ 518 (532)
+++||++.++|.++.... ..++||+|.++
T Consensus 73 ~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~ 103 (105)
T cd04050 73 GKSLGSLTLPLSELLKEPDLTLDQPFPLDNS 103 (105)
T ss_pred CCccEEEEEEHHHhhccccceeeeeEecCCC
Confidence 789999999999998754 57899999864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.6e-17 Score=141.63 Aligned_cols=106 Identities=20% Similarity=0.324 Sum_probs=88.5
Q ss_pred CeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEeeCCC-CCEEEEEEEEcc
Q 009539 252 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPE-SQAVELAVYDWE 328 (532)
Q Consensus 252 ~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~L~v~v~d~d 328 (532)
..+.|.|+|++|+||+..+ .|.+||||++++.+.. ...+||++++++.||+|||+|.|.+.... ...|.++|||++
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~ 88 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL 88 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence 3578999999999999998 7899999999998643 23468999999999999999999986432 357899999998
Q ss_pred CCC-CCCeeEEEEEeCccCCCCCCeEEEEec
Q 009539 329 QVG-KHDKMGMNVVPLKELTPEEPSVKTLDL 358 (532)
Q Consensus 329 ~~~-~d~~iG~~~i~l~~l~~~~~~~~~l~l 358 (532)
... ++++||.+.+++.++..+.....|+.|
T Consensus 89 ~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 89 SKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 765 478999999999999876666667643
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.4e-17 Score=141.94 Aligned_cols=110 Identities=30% Similarity=0.428 Sum_probs=94.4
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAV 324 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v 324 (532)
+....+.|+|+|++|+||+..+..+.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ....|.+.|
T Consensus 11 y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v 90 (127)
T cd04030 11 YSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAV 90 (127)
T ss_pred EeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEE
Confidence 445678999999999999999988999999999997543 3457999999999999999999998542 357899999
Q ss_pred EEccCC--CCCCeeEEEEEeCccCCCCCCeEEEEec
Q 009539 325 YDWEQV--GKHDKMGMNVVPLKELTPEEPSVKTLDL 358 (532)
Q Consensus 325 ~d~d~~--~~d~~iG~~~i~l~~l~~~~~~~~~l~l 358 (532)
||++.. +++++||++.+++.++..+.....|++|
T Consensus 91 ~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 91 KNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred EECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 999875 6899999999999999877777778765
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.8e-17 Score=140.59 Aligned_cols=112 Identities=24% Similarity=0.379 Sum_probs=93.6
Q ss_pred EEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCC---CCCCCCEEEEEEcC------eeEEE
Q 009539 375 QLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEG---KHHTNPYARILFRG------EERKT 445 (532)
Q Consensus 375 ~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~---~~~~dpyv~v~~~~------~~~kT 445 (532)
+|.+++.|.|. .+.|.|+|++|+||+. .+.+||||++++.. .++||
T Consensus 2 ~i~~sL~Y~~~-------------------------~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT 56 (124)
T cd08680 2 QVQIGLRYDSG-------------------------DSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRT 56 (124)
T ss_pred eEEEEEEECCC-------------------------CCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEc
Confidence 58889999863 7889999999999976 36799999999842 35699
Q ss_pred eeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEccccccCCCCCceeEEEEEechhhhcc-ceeceEEEe
Q 009539 446 KHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSN-KRINEKYHL 515 (532)
Q Consensus 446 ~vv~~t~nP~w~e~f~f~v~~~~~~-~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~-~~~~~~~~L 515 (532)
++++++.||+|||+|+|.+...... ..|.++||+.+. ++++++||.+.++|+++... ....+||.|
T Consensus 57 ~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~----~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 57 KALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVGP----DQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred CccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCCC----CCceeEEEEEEEEhhhccCCCccccccccC
Confidence 9999999999999999998754233 489999999975 57899999999999999554 457789976
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.4e-17 Score=139.80 Aligned_cols=111 Identities=32% Similarity=0.468 Sum_probs=96.4
Q ss_pred cCCCCeEEEEEEEEEcCCCCcCC-CCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCC--CCEEEEEE
Q 009539 248 AYRRPVGILHVKVVKAMNLKKKD-LLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE--SQAVELAV 324 (532)
Q Consensus 248 ~~~~~~g~L~V~v~~A~~L~~~d-~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~v 324 (532)
.++...+.|.|+|++|++|+..+ ..+.+||||++++.+.....++|++++++.||+|||+|.|.+.... ...|.|+|
T Consensus 8 ~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v 87 (123)
T cd08390 8 QYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSV 87 (123)
T ss_pred EECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEE
Confidence 35567789999999999999998 6788999999999654444578999999999999999999986532 45899999
Q ss_pred EEccCCCCCCeeEEEEEeCccCCCCCCeEEEEec
Q 009539 325 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 358 (532)
Q Consensus 325 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l 358 (532)
||++..+++++||++.++|+++........|++|
T Consensus 88 ~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L 121 (123)
T cd08390 88 YDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDL 121 (123)
T ss_pred EECCcCCCCcEEEEEEEeccceecCCCceEEEeC
Confidence 9999888899999999999999988888888876
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.6e-17 Score=137.46 Aligned_cols=99 Identities=32% Similarity=0.507 Sum_probs=87.3
Q ss_pred EEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCC
Q 009539 255 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHD 334 (532)
Q Consensus 255 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~ 334 (532)
.|.|+|++|++|+..+..|.+||||+++++++ .++|++++++.||+|||+|.|.+.++..+.|.|+|||++. ++
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~---~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~ 74 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKT---TQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GK 74 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCE---EEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CC
Confidence 38899999999999988899999999999874 3589999999999999999999988777899999999875 88
Q ss_pred eeEEEEEeCccCCCCC--CeEEEEecc
Q 009539 335 KMGMNVVPLKELTPEE--PSVKTLDLL 359 (532)
Q Consensus 335 ~iG~~~i~l~~l~~~~--~~~~~l~l~ 359 (532)
+||++.++|.++.... ....|++|.
T Consensus 75 ~iG~~~i~l~~l~~~~~~~~~~w~~L~ 101 (105)
T cd04050 75 SLGSLTLPLSELLKEPDLTLDQPFPLD 101 (105)
T ss_pred ccEEEEEEHHHhhccccceeeeeEecC
Confidence 9999999999998654 456788773
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.8e-17 Score=136.74 Aligned_cols=114 Identities=37% Similarity=0.589 Sum_probs=98.4
Q ss_pred EEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCCe
Q 009539 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDK 335 (532)
Q Consensus 256 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~ 335 (532)
|+|+|++|++|+..+..|.+||||++.+.+.. .++|+++.++.||.|||+|.|.+.....+.+.|+|||++..+++++
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~--~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~ 78 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEK--VFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDL 78 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCc--ceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCc
Confidence 57999999999999888899999999997643 3699999999999999999999977667899999999998889999
Q ss_pred eEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEE
Q 009539 336 MGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVV 378 (532)
Q Consensus 336 iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l 378 (532)
||++.+++.++..+.....|++|.+ +++...|.|.+
T Consensus 79 iG~~~~~l~~l~~~~~~~~~~~L~~-------~g~~~~~~~~~ 114 (115)
T cd04040 79 LGSAYIDLSDLEPEETTELTLPLDG-------QGGGKLGAVFL 114 (115)
T ss_pred eEEEEEEHHHcCCCCcEEEEEECcC-------CCCccCceEEc
Confidence 9999999999998888888998853 24556666643
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.6e-17 Score=136.03 Aligned_cols=100 Identities=24% Similarity=0.470 Sum_probs=88.1
Q ss_pred CCCCCCEEEEEEcCe-eEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCCCCceeEEEEEechhhhc
Q 009539 427 KHHTNPYARILFRGE-ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVS 505 (532)
Q Consensus 427 ~~~~dpyv~v~~~~~-~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~ 505 (532)
.|.+||||+++++++ ..+|++++++.||.|||.|+|.+.+. ..+.|.|+|+|++. + +|++||++.++|++++.
T Consensus 10 ~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~~l~i~v~d~~~----~-~d~~iG~~~v~L~~l~~ 83 (111)
T cd04052 10 TGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDR-RKSRVTVVVKDDRD----R-HDPVLGSVSISLNDLID 83 (111)
T ss_pred CCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCc-CCCEEEEEEEECCC----C-CCCeEEEEEecHHHHHh
Confidence 367999999999886 46999999999999999999999875 45689999999985 5 79999999999999976
Q ss_pred c-ceeceEEEeCCCCCeEEEEEEEEEeC
Q 009539 506 N-KRINEKYHLIDSKNGRIQIELQWRTA 532 (532)
Q Consensus 506 ~-~~~~~~~~L~~~~~G~i~l~~~w~p~ 532 (532)
. ....+||+|.+.++|+|+++++|+|+
T Consensus 84 ~~~~~~~w~~L~~~~~G~i~~~~~~~p~ 111 (111)
T cd04052 84 ATSVGQQWFPLSGNGQGRIRISALWKPV 111 (111)
T ss_pred hhhccceeEECCCCCCCEEEEEEEEecC
Confidence 4 44689999998789999999999996
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-17 Score=144.34 Aligned_cols=115 Identities=20% Similarity=0.353 Sum_probs=93.5
Q ss_pred ccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC-----CCCCCEEEEEEcCe-----e
Q 009539 373 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK-----HHTNPYARILFRGE-----E 442 (532)
Q Consensus 373 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~-----~~~dpyv~v~~~~~-----~ 442 (532)
.|+|.++++|.|. .+.|.|.|++|+||+.. +.+||||++++... +
T Consensus 1 ~Gel~~sL~Y~~~-------------------------~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~k 55 (138)
T cd08407 1 TGEVLLSISYLPA-------------------------ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKK 55 (138)
T ss_pred CCEEEEEEEEeCC-------------------------CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccce
Confidence 4999999999974 78899999999999763 34899999998652 4
Q ss_pred EEEeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCC
Q 009539 443 RKTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS 518 (532)
Q Consensus 443 ~kT~vv~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 518 (532)
+||++++++.||+|||.|.|.+..... +..|.++|||++. ++++++||++.+++.. .+....+|.++..+
T Consensus 56 kkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~----~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~~ 126 (138)
T cd08407 56 KQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQDS----PGQSLPLGRCSLGLHT--SGTERQHWEEMLDN 126 (138)
T ss_pred eccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCCC----CcCcceeceEEecCcC--CCcHHHHHHHHHhC
Confidence 599999999999999999999976433 3479999999986 6789999999999975 33344566665444
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.8e-17 Score=140.56 Aligned_cols=109 Identities=27% Similarity=0.497 Sum_probs=89.8
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEeeCC---CCCEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP---ESQAVELA 323 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~---~~~~L~v~ 323 (532)
++...+.|.|+|++|++|+..+..+.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ....|.|+
T Consensus 11 ~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~ 90 (125)
T cd04031 11 YDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVT 90 (125)
T ss_pred EeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEE
Confidence 444568999999999999999988999999999997532 2346899999999999999999986442 35789999
Q ss_pred EEEccCCCCCCeeEEEEEeCccCCCCCCeEEEEec
Q 009539 324 VYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 358 (532)
Q Consensus 324 v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l 358 (532)
|||++..+++++||++.++|++... .....|++|
T Consensus 91 V~d~~~~~~~~~iG~~~i~l~~~~~-~~~~~W~~L 124 (125)
T cd04031 91 VWDYDRDGENDFLGEVVIDLADALL-DDEPHWYPL 124 (125)
T ss_pred EEeCCCCCCCcEeeEEEEecccccc-cCCcceEEC
Confidence 9999998899999999999998332 334566665
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.4e-17 Score=144.79 Aligned_cols=108 Identities=34% Similarity=0.532 Sum_probs=91.8
Q ss_pred CccCCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcC--------------------------CceeeEeeCCC
Q 009539 246 SKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKL--------------------------PSKKTTVKHKN 299 (532)
Q Consensus 246 ~~~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~--------------------------~~~~T~v~~~t 299 (532)
......+.+.|.|+|++|++|...|..|.+||||++.+.+... ..++|++++++
T Consensus 20 ~~~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~t 99 (153)
T cd08676 20 VREAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQT 99 (153)
T ss_pred HHhcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCC
Confidence 3456778999999999999999999999999999999964311 23689999999
Q ss_pred CCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCCeeEEEEEeCccCCCCCCeEEEEec
Q 009539 300 LNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 358 (532)
Q Consensus 300 ~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l 358 (532)
.||+|||+|.|.+..+..+.|.|+|||++ +++||++.++++++.. .....|++|
T Consensus 100 lnP~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 100 LNPVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred CCCccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 99999999999998766789999999997 8999999999999983 345666653
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-16 Score=137.47 Aligned_cols=111 Identities=24% Similarity=0.494 Sum_probs=97.5
Q ss_pred EeeeecCCC-CCCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCC-CCCeEEEEEEEccccccCCCCCceeEE
Q 009539 418 VHEAQDVEG-KHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPP-TNDRLHVEVCSVSSRIGLLHPKETLGY 495 (532)
Q Consensus 418 i~~a~~L~~-~~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~-~~~~l~v~V~d~~~~~~~~~~d~~lG~ 495 (532)
|++|+||+. .+.+||||++++++.+++|++++++.||+|||.|.|.+.... ..+.+.++|||++. ++.|++||+
T Consensus 2 vi~a~~L~~~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~----~~~d~~iG~ 77 (127)
T cd08373 2 VVSLKNLPGLKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEK----VGRNRLIGS 77 (127)
T ss_pred eEEeeCCcccCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCC----CCCCceEEE
Confidence 678999987 468999999999999999999999999999999999997642 34689999999975 567899999
Q ss_pred EEEechhhhccceeceEEEeCCCC----CeEEEEEEEEEeC
Q 009539 496 IDINLSDVVSNKRINEKYHLIDSK----NGRIQIELQWRTA 532 (532)
Q Consensus 496 ~~i~L~~l~~~~~~~~~~~L~~~~----~G~i~l~~~w~p~ 532 (532)
+.++|+++..+.....|++|.+.+ .|+|++++.|.|+
T Consensus 78 ~~~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~ 118 (127)
T cd08373 78 ATVSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQPP 118 (127)
T ss_pred EEEEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEeCC
Confidence 999999999888888999996442 5999999999985
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-16 Score=135.80 Aligned_cols=101 Identities=23% Similarity=0.308 Sum_probs=85.3
Q ss_pred EEEEEEeeeecCCCC--CCCCCEEEEEEcC-------eeEEEeeecCCCCCcccceEEEEecCC--CCCCeEEEEEEEcc
Q 009539 413 LLVVIVHEAQDVEGK--HHTNPYARILFRG-------EERKTKHVKKNRDPRWEEEFQFMLEEP--PTNDRLHVEVCSVS 481 (532)
Q Consensus 413 ~L~v~i~~a~~L~~~--~~~dpyv~v~~~~-------~~~kT~vv~~t~nP~w~e~f~f~v~~~--~~~~~l~v~V~d~~ 481 (532)
.|+|+|++|+||+.. |.+||||+|++.+ ++++|+++.++.||+|||+|+|.+... .....|.+.|+|++
T Consensus 1 kL~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 1 KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred CEEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 378999999999874 6899999999842 245899999999999999999999753 12246999999987
Q ss_pred ccccCCCCCceeEEEEEechhhhccceeceEEEeCC
Q 009539 482 SRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLID 517 (532)
Q Consensus 482 ~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~ 517 (532)
. .+.+++||++.++|+++..++....|++|..
T Consensus 81 ~----~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~ 112 (120)
T cd08395 81 F----ARDDRLVGVTVLQLRDIAQAGSCACWLPLGR 112 (120)
T ss_pred c----cCCCCEEEEEEEEHHHCcCCCcEEEEEECcC
Confidence 4 4678999999999999998888889999964
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-16 Score=137.13 Aligned_cols=114 Identities=20% Similarity=0.426 Sum_probs=96.4
Q ss_pred eEEEEEEeeeecCCCC----CCCCCEEEEEEcC--eeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccccc
Q 009539 412 GLLVVIVHEAQDVEGK----HHTNPYARILFRG--EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIG 485 (532)
Q Consensus 412 g~L~v~i~~a~~L~~~----~~~dpyv~v~~~~--~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~ 485 (532)
|.|.|+|++|+||+.. +.+||||++++++ +..+|++++++.||.|||.|.|.+.. ..+.|.++|||++.
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~--~~~~l~~~v~d~~~--- 76 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNS--LTEPLNLTVYDFND--- 76 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCC--CCCEEEEEEEecCC---
Confidence 7899999999999852 4689999999988 67899999999999999999999873 45789999999985
Q ss_pred CCCCCceeEEEEEechhhhccceece-EEEeC--CCCCeEEEEEEEEEe
Q 009539 486 LLHPKETLGYIDINLSDVVSNKRINE-KYHLI--DSKNGRIQIELQWRT 531 (532)
Q Consensus 486 ~~~~d~~lG~~~i~L~~l~~~~~~~~-~~~L~--~~~~G~i~l~~~w~p 531 (532)
.+.|++||++.++|.++........ ++.+. +...|+|+++++|.|
T Consensus 77 -~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 77 -KRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRFFP 124 (124)
T ss_pred -CCCCceeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEeCC
Confidence 4679999999999999998765543 34443 334799999999987
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.6e-17 Score=139.67 Aligned_cols=115 Identities=25% Similarity=0.387 Sum_probs=95.8
Q ss_pred EEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeC-CCCCceeecEEEEEeeCCC----CCEEEEEEEEccC
Q 009539 255 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKH-KNLNPEWNEEYNFTVRDPE----SQAVELAVYDWEQ 329 (532)
Q Consensus 255 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~~----~~~L~v~v~d~d~ 329 (532)
+|+|+|++|++|+..+..+.+||||++++++.. .++|++.. ++.||.|||+|.|.+.... ...|.|+|||++.
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~--~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~ 78 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSH--KQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP 78 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCc--ccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC
Confidence 489999999999999988999999999998722 24888864 6899999999999997763 6889999999998
Q ss_pred CCCCCeeEEEEEeCccCCCCCC-----eEEEEecccccccCCCCCCccccEEEE
Q 009539 330 VGKHDKMGMNVVPLKELTPEEP-----SVKTLDLLKNMDLNDGQNEKSRGQLVV 378 (532)
Q Consensus 330 ~~~d~~iG~~~i~l~~l~~~~~-----~~~~l~l~~~~~~~~~~~~~~~G~l~l 378 (532)
.++|++||++.+++.++..+.. ...|+.+... +++.+|.|++
T Consensus 79 ~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~-------~g~~~G~~~~ 125 (125)
T cd04051 79 SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRP-------SGKPQGVLNF 125 (125)
T ss_pred CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECC-------CCCcCeEEeC
Confidence 8899999999999999987654 3567776431 4778888874
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-16 Score=136.29 Aligned_cols=110 Identities=27% Similarity=0.480 Sum_probs=95.0
Q ss_pred EEEEEEeeeecCCCC---CCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCCC
Q 009539 413 LLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 489 (532)
Q Consensus 413 ~L~v~i~~a~~L~~~---~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~ 489 (532)
+|+|+|++|++|+.. +.+||||++++++...+|++++++.||.|||+|.|.+... ....|.|+|||++. ++.
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~~l~~~v~d~~~----~~~ 75 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEG-ADSPLSVEVWDWDL----VSK 75 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCC-CCCEEEEEEEECCC----CCC
Confidence 488999999999763 5789999999999889999999999999999999999875 35689999999975 567
Q ss_pred CceeEEEEEechhhhccceeceEEEeCCC---------CCeEEEEEE
Q 009539 490 KETLGYIDINLSDVVSNKRINEKYHLIDS---------KNGRIQIEL 527 (532)
Q Consensus 490 d~~lG~~~i~L~~l~~~~~~~~~~~L~~~---------~~G~i~l~~ 527 (532)
+++||++.++|+++........||.|... ..|.|++.+
T Consensus 76 ~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 76 NDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred CcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 89999999999999876667899999742 248888876
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.7e-17 Score=139.85 Aligned_cols=104 Identities=33% Similarity=0.556 Sum_probs=90.8
Q ss_pred EEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeC-CCCCceeecEEEEEeeCC---CCCEEEEEEEEccC
Q 009539 254 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKH-KNLNPEWNEEYNFTVRDP---ESQAVELAVYDWEQ 329 (532)
Q Consensus 254 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~---~~~~L~v~v~d~d~ 329 (532)
|.|.|+|++|++|++.+..+.+||||+++++++. ++|++.. ++.||.|||+|.|.+..+ ..+.|.|+|||++.
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~---~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQE---RKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN 77 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEe---eeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence 6899999999999999888999999999997643 4777777 489999999999999876 35789999999999
Q ss_pred CCCCCeeEEEEEeCccCCCCCCeEEEEeccc
Q 009539 330 VGKHDKMGMNVVPLKELTPEEPSVKTLDLLK 360 (532)
Q Consensus 330 ~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~ 360 (532)
.++|++||++.+++.++..+.....|+.+.+
T Consensus 78 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 78 FSDDDFIGEATIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred CCCCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence 8899999999999999988777777877643
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.4e-16 Score=138.12 Aligned_cols=124 Identities=19% Similarity=0.288 Sum_probs=97.4
Q ss_pred EEEEEEEEEcCCCCcCCCCCCCCcEEEEEE--eCCcCCceeeEeeCCCCCceeecEEEEEeeCCC--------CCEEEEE
Q 009539 254 GILHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE--------SQAVELA 323 (532)
Q Consensus 254 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~--~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--------~~~L~v~ 323 (532)
|.|.|....+.+|+..+..+.+||||++++ .+......||+++++|+||+|||+|.|.+.... ...|.++
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 444444444444778877789999999997 323445679999999999999999999996431 4579999
Q ss_pred EEEccCC-CCCCeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEE
Q 009539 324 VYDWEQV-GKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 384 (532)
Q Consensus 324 v~d~d~~-~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p 384 (532)
|||++.+ ++|++||++.++|+.+........+++|... .....|+|++.+....
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~-------~k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDG-------RKATGGKLEVKVRLRE 138 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhC-------CCCcCCEEEEEEEecC
Confidence 9999876 5799999999999999887766778887532 3467889999998764
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-16 Score=137.48 Aligned_cols=113 Identities=22% Similarity=0.390 Sum_probs=95.8
Q ss_pred cEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCC----CCCCCCEEEEEEcC-----eeEE
Q 009539 374 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEG----KHHTNPYARILFRG-----EERK 444 (532)
Q Consensus 374 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~----~~~~dpyv~v~~~~-----~~~k 444 (532)
|+|++++.|.+ ..+.|.|+|++|+||+. .+.+||||++++.+ .+.+
T Consensus 1 G~i~~~l~y~~-------------------------~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~k 55 (123)
T cd08521 1 GEIEFSLSYNY-------------------------KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRK 55 (123)
T ss_pred CeEEEEEEEeC-------------------------CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceee
Confidence 88999999975 36899999999999975 35799999999842 3469
Q ss_pred EeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEe
Q 009539 445 TKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHL 515 (532)
Q Consensus 445 T~vv~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L 515 (532)
|++++++.||+|||+|.|.+..... ...+.++|||++. ++++++||++.++|+++..+.....||+|
T Consensus 56 T~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~----~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 56 TSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHDR----FGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred ccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCCC----CcCCceeeEEEEecccccccCCCccEEEC
Confidence 9999999999999999999875322 3489999999875 56889999999999999777777899987
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.4e-17 Score=136.73 Aligned_cols=101 Identities=29% Similarity=0.448 Sum_probs=87.0
Q ss_pred EEEEEEEcCCCCcCCC-CCCCCcEEEEEEeCCcCCceeeEeeCCCCCcee-ecEEEEEeeCCC--CCEEEEEEEEccCCC
Q 009539 256 LHVKVVKAMNLKKKDL-LGASDPYVKLKITEDKLPSKKTTVKHKNLNPEW-NEEYNFTVRDPE--SQAVELAVYDWEQVG 331 (532)
Q Consensus 256 L~V~v~~A~~L~~~d~-~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~W-ne~f~f~v~~~~--~~~L~v~v~d~d~~~ 331 (532)
|.|+|++|++|+.++. .|.+||||++++++. .+||++++++.||.| ||+|.|.+.... .+.|.|+|||++..+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~---~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~ 77 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGST---TYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS 77 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCe---eEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC
Confidence 6899999999999884 688999999999863 469999999999999 999999987542 478999999999999
Q ss_pred CCCeeEEEEEeCccCCCC---CCeEEEEecc
Q 009539 332 KHDKMGMNVVPLKELTPE---EPSVKTLDLL 359 (532)
Q Consensus 332 ~d~~iG~~~i~l~~l~~~---~~~~~~l~l~ 359 (532)
++++||++.+++.++... .....|++|+
T Consensus 78 ~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~ 108 (110)
T cd08688 78 ANDAIGKVYIDLNPLLLKDSVSQISGWFPIY 108 (110)
T ss_pred CCCceEEEEEeHHHhcccCCccccCCeEEcc
Confidence 999999999999999873 3456677764
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.1e-16 Score=140.53 Aligned_cols=113 Identities=21% Similarity=0.421 Sum_probs=95.6
Q ss_pred ceEEEEEEeeeecCCCC---------------------------------CCCCCEEEEEEcCee-EEEeeecCCCCCcc
Q 009539 411 GGLLVVIVHEAQDVEGK---------------------------------HHTNPYARILFRGEE-RKTKHVKKNRDPRW 456 (532)
Q Consensus 411 ~g~L~v~i~~a~~L~~~---------------------------------~~~dpyv~v~~~~~~-~kT~vv~~t~nP~w 456 (532)
-|.|.|+|++|++|+.. +.+||||++++++.+ .+|++++++.||+|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 47888999999988642 347999999999866 49999999999999
Q ss_pred cceEEEEecCCCCCCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCC------CCeEEEEEEEEE
Q 009539 457 EEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS------KNGRIQIELQWR 530 (532)
Q Consensus 457 ~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~------~~G~i~l~~~w~ 530 (532)
||.|+|.+... .+.|.++|+|++. + ++++||++.++++++..+...++||+|.+. +.|+|+++++|.
T Consensus 86 nE~F~~~~~~~--~~~l~~~V~d~d~----~-~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 86 NESFHIYCAHY--ASHVEFTVKDNDV----V-GAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred ceEEEEEccCC--CCEEEEEEEeCCC----c-CCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 99999998754 3579999999874 3 468999999999999988888999999753 258999999984
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.5e-16 Score=133.15 Aligned_cols=92 Identities=12% Similarity=0.245 Sum_probs=81.2
Q ss_pred eEEEEEEeeeecCCCC-------CCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccc
Q 009539 412 GLLVVIVHEAQDVEGK-------HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRI 484 (532)
Q Consensus 412 g~L~v~i~~a~~L~~~-------~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~ 484 (532)
|+|.|+|++|++|+.. +.+||||+++++++.+||++++++.||+|||.|.|.+.+......|.++|||++.
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~-- 78 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDK-- 78 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCC--
Confidence 7899999999999863 2489999999998889999999999999999999998765444579999999986
Q ss_pred cCCCCCceeEEEEEechhhhccc
Q 009539 485 GLLHPKETLGYIDINLSDVVSNK 507 (532)
Q Consensus 485 ~~~~~d~~lG~~~i~L~~l~~~~ 507 (532)
++.|++||++.++|++++.+.
T Consensus 79 --~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 79 --FSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred --CCCCcceEEEEEEHHHHHhhC
Confidence 578999999999999998754
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-16 Score=138.83 Aligned_cols=92 Identities=27% Similarity=0.486 Sum_probs=84.4
Q ss_pred CceEEEEEEeeeecCCCC---CCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccC
Q 009539 410 GGGLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGL 486 (532)
Q Consensus 410 ~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~ 486 (532)
..|.|+|.|.+|.||..+ +++||||.+.+++++.||++++++.||+|||.|+|.+.++ +..+.++|||+|.
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~--~~~lkv~VyD~D~---- 77 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDP--NTPLKVTVYDKDT---- 77 (168)
T ss_pred cceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCC--CceEEEEEEeCCC----
Confidence 368999999999999763 6899999999999999999999999999999999999986 5689999999997
Q ss_pred CCCCceeEEEEEechhhhccc
Q 009539 487 LHPKETLGYIDINLSDVVSNK 507 (532)
Q Consensus 487 ~~~d~~lG~~~i~L~~l~~~~ 507 (532)
+++|++||.++|+|..+++..
T Consensus 78 fs~dD~mG~A~I~l~p~~~~~ 98 (168)
T KOG1030|consen 78 FSSDDFMGEATIPLKPLLEAQ 98 (168)
T ss_pred CCcccccceeeeccHHHHHHh
Confidence 799999999999999988743
|
|
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-16 Score=136.64 Aligned_cols=116 Identities=20% Similarity=0.328 Sum_probs=94.1
Q ss_pred cccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCC---C-CCCCCEEEEEEcC---eeEE
Q 009539 372 SRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEG---K-HHTNPYARILFRG---EERK 444 (532)
Q Consensus 372 ~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~---~-~~~dpyv~v~~~~---~~~k 444 (532)
..|+|.+++.|.+. .+.|+|+|++|+||+. . +.+||||++++.. ++.|
T Consensus 1 ~~G~l~~~l~y~~~-------------------------~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~k 55 (128)
T cd08388 1 KLGTLFFSLRYNSE-------------------------KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVK 55 (128)
T ss_pred CCeEEEEEEEEECC-------------------------CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceee
Confidence 37999999999863 6799999999999986 2 6789999999853 3569
Q ss_pred EeeecCCCCCcccceEEEE-ecCCC-CCCeEEEEEEEccccccCCCCCceeEEEEEechhhhcc--ceeceEEEeC
Q 009539 445 TKHVKKNRDPRWEEEFQFM-LEEPP-TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSN--KRINEKYHLI 516 (532)
Q Consensus 445 T~vv~~t~nP~w~e~f~f~-v~~~~-~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~--~~~~~~~~L~ 516 (532)
|++++++.||+|||+|.|. +.... ....|.++|||++. ++++++||++.++|+++... ++...|.+|.
T Consensus 56 T~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~----~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 56 TRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDR----YSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred ccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCC----CCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 9999999999999999994 43211 22479999999975 67899999999999998554 5667787764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-16 Score=140.29 Aligned_cols=107 Identities=21% Similarity=0.346 Sum_probs=91.4
Q ss_pred EEEEEEeeeecCCCC-----------------CCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEE
Q 009539 413 LLVVIVHEAQDVEGK-----------------HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHV 475 (532)
Q Consensus 413 ~L~v~i~~a~~L~~~-----------------~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v 475 (532)
.+.|+|++|++|+.. +.+||||+|.+++++.||++++++.||+|||+|.|.+..++..+.+.+
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 378999999999863 258999999999999999999999999999999999876545678999
Q ss_pred EEEEccccccCCCCCceeEEEEEechhhhccce-------eceEEEeCCCCCeEE
Q 009539 476 EVCSVSSRIGLLHPKETLGYIDINLSDVVSNKR-------INEKYHLIDSKNGRI 523 (532)
Q Consensus 476 ~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~-------~~~~~~L~~~~~G~i 523 (532)
+|||++. +++|++||++.++|.++...+. ..+|+.|.+++.+..
T Consensus 81 ~v~D~d~----~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~~~~ 131 (151)
T cd04018 81 QIRDWDR----VGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPREYS 131 (151)
T ss_pred EEEECCC----CCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCccccc
Confidence 9999986 5689999999999999987542 358999988765543
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-16 Score=137.02 Aligned_cols=114 Identities=25% Similarity=0.302 Sum_probs=96.1
Q ss_pred ccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEcC---eeEEEe
Q 009539 373 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG---EERKTK 446 (532)
Q Consensus 373 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~---~~~kT~ 446 (532)
.|+|++++.|.+. .+.|.|+|++|+||+.. +.+||||++.+.. +++||+
T Consensus 2 ~G~l~~sl~Y~~~-------------------------~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTk 56 (124)
T cd08389 2 CGDLDVAFEYDPS-------------------------ARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTK 56 (124)
T ss_pred CEEEEEEEEECCC-------------------------CCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecc
Confidence 6999999999864 67899999999999863 6789999988733 356999
Q ss_pred eecCCCCCcccceEEEE-ecCCC-CCCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeC
Q 009539 447 HVKKNRDPRWEEEFQFM-LEEPP-TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLI 516 (532)
Q Consensus 447 vv~~t~nP~w~e~f~f~-v~~~~-~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 516 (532)
++++ .||+|||+|.|. +.... .+..|.++|||++. ++++++||++.++|+++...+....||+|+
T Consensus 57 v~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~----~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 57 VQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVER----MRKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred cccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCC----cccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 9888 999999999998 54321 23479999999985 678999999999999997777788999985
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.8e-16 Score=135.79 Aligned_cols=115 Identities=18% Similarity=0.269 Sum_probs=97.1
Q ss_pred ccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCC---CCCCCCEEEEEEc---CeeEEEe
Q 009539 373 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEG---KHHTNPYARILFR---GEERKTK 446 (532)
Q Consensus 373 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~---~~~~dpyv~v~~~---~~~~kT~ 446 (532)
.|+|++++.|.+. .+.|.|+|++|+||+. .+.+||||++++. +...+|+
T Consensus 2 ~G~l~~~l~y~~~-------------------------~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~ 56 (125)
T cd08386 2 LGRIQFSVSYDFQ-------------------------ESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETK 56 (125)
T ss_pred ccEEEEEEEECCC-------------------------CCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeee
Confidence 6999999999753 6789999999999976 3679999999993 4567999
Q ss_pred eecCCCCCcccceEEEEecCC--CCCCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeC
Q 009539 447 HVKKNRDPRWEEEFQFMLEEP--PTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLI 516 (532)
Q Consensus 447 vv~~t~nP~w~e~f~f~v~~~--~~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 516 (532)
+++++.||.|||.|.|.+... .....|.++|||++. ++.+++||++.++++++........||.|.
T Consensus 57 v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~----~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 57 VKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDR----FSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred eecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCC----CcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 999999999999999975321 123479999999985 567899999999999998777788999985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.2e-17 Score=143.60 Aligned_cols=110 Identities=28% Similarity=0.382 Sum_probs=90.5
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCC--CCCCCcEEEEEEeCC--cCCceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDL--LGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVEL 322 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~--~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v 322 (532)
|....+.|.|+|++|+||+..|. .+.+||||++++.++ +..++||++++++.||+|||+|.|.+... ....|.|
T Consensus 10 Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~ 89 (138)
T cd08407 10 YLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVEL 89 (138)
T ss_pred EeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEE
Confidence 44567889999999999999883 355899999999874 34467999999999999999999998653 3578999
Q ss_pred EEEEccCCCCCCeeEEEEEeCccCCCCCCeEEEEeccc
Q 009539 323 AVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLK 360 (532)
Q Consensus 323 ~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~ 360 (532)
+|||+|..+++++||++.+++.. .++..++|.+++.
T Consensus 90 ~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~ 125 (138)
T cd08407 90 EVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLD 125 (138)
T ss_pred EEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHh
Confidence 99999999999999999999975 3445556666543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.8e-17 Score=141.62 Aligned_cols=110 Identities=27% Similarity=0.331 Sum_probs=90.1
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEeeC--CCCCEEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRD--PESQAVELAV 324 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~v 324 (532)
|....+.|.|+|++|+||+..+..|.+||||++++.+.. ..++||++++++.||+|||+|.|.+.. .....|+|+|
T Consensus 10 Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V 89 (136)
T cd08406 10 YLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTV 89 (136)
T ss_pred EcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEE
Confidence 445667899999999999999988999999999996543 335689999999999999999999864 3467899999
Q ss_pred EEccCCCCCCeeEEEEEeCccCCCCCCeEEEEeccc
Q 009539 325 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLK 360 (532)
Q Consensus 325 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~ 360 (532)
||+|..+++++||++.++.... +...+.|.++..
T Consensus 90 ~~~d~~~~~~~iG~v~lg~~~~--g~~~~hW~~ml~ 123 (136)
T cd08406 90 AESTEDGKTPNVGHVIIGPAAS--GMGLSHWNQMLA 123 (136)
T ss_pred EeCCCCCCCCeeEEEEECCCCC--ChhHHHHHHHHH
Confidence 9999999999999999977643 344455555543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.8e-16 Score=135.90 Aligned_cols=115 Identities=29% Similarity=0.503 Sum_probs=94.6
Q ss_pred EEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCC----
Q 009539 255 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQV---- 330 (532)
Q Consensus 255 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~---- 330 (532)
.|+|+|++|++|+..|..|.+||||++++++.. .+|++++++.||.|||+|.|.+..+ ...|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~---~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~ 77 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTK---KRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSR 77 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEe---eecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccc
Confidence 589999999999999988999999999997543 5899999999999999999998654 57899999999852
Q ss_pred -------CCCCeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEE
Q 009539 331 -------GKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEF 380 (532)
Q Consensus 331 -------~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l 380 (532)
+.+++||++.+++.++... ...|+.|.+.. .....+|+|++++
T Consensus 78 ~~~~~~~~~~~~iG~~~i~l~~~~~~--~~~w~~L~~~~-----~~~~~~G~i~~~~ 127 (127)
T cd04027 78 LKQKFTRESDDFLGQTIIEVRTLSGE--MDVWYNLEKRT-----DKSAVSGAIRLHI 127 (127)
T ss_pred cceeccccCCCcceEEEEEhHHccCC--CCeEEECccCC-----CCCcEeEEEEEEC
Confidence 4699999999999988643 45677774421 2356799998864
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-16 Score=136.75 Aligned_cols=103 Identities=28% Similarity=0.478 Sum_probs=90.7
Q ss_pred EEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCC
Q 009539 254 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKH 333 (532)
Q Consensus 254 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d 333 (532)
|+|+|+|++|++|+..+..|.+||||++++++.. .++|++++++.||+|||+|.|.+... .+.|.|+|||++..++|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~--~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d 77 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIV--KGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKD 77 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEE--eeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCC
Confidence 6899999999999999988999999999997542 35899999999999999999998765 57999999999999999
Q ss_pred CeeEEEEEeCccCCCCCCeEEEEeccc
Q 009539 334 DKMGMNVVPLKELTPEEPSVKTLDLLK 360 (532)
Q Consensus 334 ~~iG~~~i~l~~l~~~~~~~~~l~l~~ 360 (532)
++||++.+++.++..+ ..+.|+.++.
T Consensus 78 ~~IG~~~~~l~~l~~~-~~~~~~~~~~ 103 (120)
T cd04045 78 RSLGSVEINVSDLIKK-NEDGKYVEYD 103 (120)
T ss_pred CeeeEEEEeHHHhhCC-CCCceEEecC
Confidence 9999999999999887 5566776654
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-16 Score=143.42 Aligned_cols=109 Identities=29% Similarity=0.392 Sum_probs=92.8
Q ss_pred CCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCC--cCCceeeEeeCCCCCceeecEEEEEeeC---CCCCEEEEEE
Q 009539 250 RRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRD---PESQAVELAV 324 (532)
Q Consensus 250 ~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~---~~~~~L~v~v 324 (532)
....|.|.|+|++|+||+..+..|.+||||++++.+. ....++|++++++.||+|||+|.|.+.. .....|.|+|
T Consensus 23 ~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V 102 (162)
T cd04020 23 KPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTV 102 (162)
T ss_pred CCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEE
Confidence 3468999999999999999998899999999998643 2345799999999999999999998532 2346899999
Q ss_pred EEccCCCCCCeeEEEEEeCccCCCCCCeEEEEec
Q 009539 325 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 358 (532)
Q Consensus 325 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l 358 (532)
||++..++|++||++.+++.++........|+.+
T Consensus 103 ~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~ 136 (162)
T cd04020 103 WDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDS 136 (162)
T ss_pred EeCCCCCCCceEEEEEEeCCccccCCCccccccC
Confidence 9999999999999999999999876666777665
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.8e-17 Score=141.63 Aligned_cols=117 Identities=18% Similarity=0.313 Sum_probs=94.7
Q ss_pred ccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCC---CCCCCCEEEEEEcCe-----eEE
Q 009539 373 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEG---KHHTNPYARILFRGE-----ERK 444 (532)
Q Consensus 373 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~---~~~~dpyv~v~~~~~-----~~k 444 (532)
-|+|.++++|.|. .+.|.|+|++|+||+. .+.+||||++++... ++|
T Consensus 1 ~G~i~~sL~Y~~~-------------------------~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~k 55 (136)
T cd08406 1 VGEILLSLSYLPT-------------------------AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKK 55 (136)
T ss_pred CcEEEEEEEEcCC-------------------------CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccC
Confidence 3899999999874 6789999999999986 367999999999432 458
Q ss_pred EeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCCC
Q 009539 445 TKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKN 520 (532)
Q Consensus 445 T~vv~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~ 520 (532)
|++++++.||+|||+|.|.+..... +..|.|+|||++. ++++++||++.+.... .++...+|..+..+++
T Consensus 56 T~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~----~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~~~~ 126 (136)
T cd08406 56 TSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTE----DGKTPNVGHVIIGPAA--SGMGLSHWNQMLASLR 126 (136)
T ss_pred CccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCC----CCCCCeeEEEEECCCC--CChhHHHHHHHHHCCC
Confidence 9999999999999999999875422 3479999999985 5789999999998764 3445567777765543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-16 Score=137.85 Aligned_cols=121 Identities=26% Similarity=0.416 Sum_probs=96.0
Q ss_pred EEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCC
Q 009539 255 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHD 334 (532)
Q Consensus 255 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~ 334 (532)
+|+|+|++|++|+..|..|.+||||++++++... ..+|++++++.||+|||+|.|.+..+..+.|.|+|||++..++|+
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~-~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd 79 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKI-NDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDD 79 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeec-cceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCc
Confidence 4799999999999999989999999999987653 357888889999999999999987766789999999999999999
Q ss_pred eeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEEc
Q 009539 335 KMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF 385 (532)
Q Consensus 335 ~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 385 (532)
+||++.+++++..-. .++.+.-+- ......|.++.+..+.|.
T Consensus 80 ~iG~~~i~l~~~~~~-~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 121 (124)
T cd04037 80 LIGETVIDLEDRFFS-KHRATCGLP--------PTYEESGPNQWRDSLKPS 121 (124)
T ss_pred eeEEEEEeecccccc-hHHHhccCC--------CcccccCceecCcccCcc
Confidence 999999999977642 222222111 123467777777666553
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.2e-17 Score=137.62 Aligned_cols=120 Identities=17% Similarity=0.257 Sum_probs=93.8
Q ss_pred cEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEcC-----eeEEE
Q 009539 374 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERKT 445 (532)
Q Consensus 374 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT 445 (532)
.+|.++++|.|. +|.|+|.|++|+||+.. +.+||||+|++.. +++||
T Consensus 1 ~el~~sL~Y~p~-------------------------~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT 55 (135)
T cd08692 1 AELQLGTCFQAV-------------------------NSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKT 55 (135)
T ss_pred CeEEEEeeecCc-------------------------CCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecC
Confidence 378999999985 78999999999999874 4569999998843 35699
Q ss_pred eeecCCC-CCcccceEEEEecCCCCCCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCCCeEE
Q 009539 446 KHVKKNR-DPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRI 523 (532)
Q Consensus 446 ~vv~~t~-nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i 523 (532)
+++++|. ||+|||+|.|.+.....+-.+.|+|||+++ ++++++||++.++.+.. .....++|.+...+++-.|
T Consensus 56 ~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~----~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~~~pr~~i 129 (135)
T cd08692 56 RLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRSS----VRRKHFLGQVWISSDSS-SSEAVEQWKDTIANPEKVV 129 (135)
T ss_pred ccEECCCCCceecceEEEeCCchhheeEEEEEEEeCCC----CcCCceEEEEEECCccC-CchhhhhHHHHHhCCCCee
Confidence 9999995 699999999999865332378889999875 57899999999999763 2233567777655544333
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.1e-16 Score=132.42 Aligned_cols=110 Identities=25% Similarity=0.417 Sum_probs=95.2
Q ss_pred eEEEEEEeeeecCCCC---CCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCC
Q 009539 412 GLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLH 488 (532)
Q Consensus 412 g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~ 488 (532)
|.|.|+|++|+||+.. +.+||||++++++...+|++++++.||.|||+|.|.+.+. .+.+.++|||++. .+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~--~~~l~~~v~d~~~----~~ 74 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDI--HDVLEVTVYDEDK----DK 74 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCc--CCEEEEEEEECCC----CC
Confidence 6899999999999863 5789999999999889999999999999999999998752 4689999999975 46
Q ss_pred CCceeEEEEEechhhhccceeceEEEeCCC-----CCeEEEEEEEE
Q 009539 489 PKETLGYIDINLSDVVSNKRINEKYHLIDS-----KNGRIQIELQW 529 (532)
Q Consensus 489 ~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~-----~~G~i~l~~~w 529 (532)
.+++||++.+++.++..+. .+||+|.+. ..|+|.+++++
T Consensus 75 ~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 75 KPEFLGKVAIPLLSIKNGE--RKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred CCceeeEEEEEHHHCCCCC--ceEEECcccCCCCceeeEEEEEEEe
Confidence 7899999999999986543 689999653 37999999876
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.5e-17 Score=140.56 Aligned_cols=110 Identities=33% Similarity=0.477 Sum_probs=92.0
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAV 324 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v 324 (532)
|....|.|.|+|++|++|+..+..|.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ....|.|+|
T Consensus 8 y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V 87 (133)
T cd08384 8 YNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITV 87 (133)
T ss_pred EcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEE
Confidence 455678999999999999999988999999999997532 3356999999999999999999998643 356899999
Q ss_pred EEccCCCCCCeeEEEEEeCccCCCCCCeEEEEeccc
Q 009539 325 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLK 360 (532)
Q Consensus 325 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~ 360 (532)
||++..+++++||++.+++.. .++....|+++++
T Consensus 88 ~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~ 121 (133)
T cd08384 88 WDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLK 121 (133)
T ss_pred EeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHh
Confidence 999988899999999999986 3334556766644
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-16 Score=140.22 Aligned_cols=101 Identities=26% Similarity=0.316 Sum_probs=84.7
Q ss_pred EEEEEEeeeecCCC-CCCCCCEEEEEEcC-----eeEEEeeecCCCCCcccceEEEEecC-----------C--C-CCCe
Q 009539 413 LLVVIVHEAQDVEG-KHHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEE-----------P--P-TNDR 472 (532)
Q Consensus 413 ~L~v~i~~a~~L~~-~~~~dpyv~v~~~~-----~~~kT~vv~~t~nP~w~e~f~f~v~~-----------~--~-~~~~ 472 (532)
.|.|+|++|+||+. .|.+||||++++.+ .+++|++++++.||+|||.|+|.+.. + . ....
T Consensus 1 kL~V~Vi~ArnL~~~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T cd04010 1 KLSVRVIECSDLALKNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLE 80 (148)
T ss_pred CEEEEEEeCcCCCCCCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEE
Confidence 37899999999987 36899999999976 45699999999999999999999951 1 1 1237
Q ss_pred EEEEEEEccccccCCCCCceeEEEEEechhhhcc-ceeceEEEeCC
Q 009539 473 LHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSN-KRINEKYHLID 517 (532)
Q Consensus 473 l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~-~~~~~~~~L~~ 517 (532)
+.|+|||++. ++.|++||++.|+|+++... .....||+|..
T Consensus 81 L~i~V~d~~~----~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~ 122 (148)
T cd04010 81 LRVDLWHASM----GGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQP 122 (148)
T ss_pred EEEEEEcCCC----CCCCceeEEEEEecccccccCCcCcceeecCC
Confidence 8999999975 56899999999999999876 56789999964
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.9e-16 Score=135.34 Aligned_cols=119 Identities=25% Similarity=0.495 Sum_probs=101.7
Q ss_pred ccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCC---CCCCCCEEEEEEcC-----eeEE
Q 009539 373 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEG---KHHTNPYARILFRG-----EERK 444 (532)
Q Consensus 373 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~---~~~~dpyv~v~~~~-----~~~k 444 (532)
+|+|++++.|. .+.|+|+|++|+||+. .+.+||||++.+.+ ...+
T Consensus 1 ~g~~~~~~~~~---------------------------~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~r 53 (131)
T cd04026 1 RGRIYLKISVK---------------------------DNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQK 53 (131)
T ss_pred CcEEEEEEEEC---------------------------CCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceec
Confidence 58999999885 3789999999999986 35799999999963 4579
Q ss_pred EeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCCCeEE
Q 009539 445 TKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRI 523 (532)
Q Consensus 445 T~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i 523 (532)
|++++++.||.|||+|.|.+........+.++|||++. ++.+++||++.++|+++... ....||+|.+...|+.
T Consensus 54 T~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~----~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~~~~~ 127 (131)
T cd04026 54 TKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDR----TTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQEEGEY 127 (131)
T ss_pred ceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCC----CCCcceeEEEEEeHHHhCcC-ccCceEECcCcccccc
Confidence 99999999999999999998764334589999999875 56789999999999999865 6688999998888864
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.6e-16 Score=132.59 Aligned_cols=100 Identities=24% Similarity=0.435 Sum_probs=87.0
Q ss_pred EEEEEeeeecCCCC----CCCCCEEEEEEcCeeEEEeeecCCCCCcc-cceEEEEecCCCC-CCeEEEEEEEccccccCC
Q 009539 414 LVVIVHEAQDVEGK----HHTNPYARILFRGEERKTKHVKKNRDPRW-EEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLL 487 (532)
Q Consensus 414 L~v~i~~a~~L~~~----~~~dpyv~v~~~~~~~kT~vv~~t~nP~w-~e~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~ 487 (532)
|.|+|++|++|+.. +.+||||+++++++.+||++++++.||.| ||.|.|.+..... .+.|.|+|||++. +
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~----~ 76 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDT----Y 76 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCC----C
Confidence 57999999999752 56899999999998899999999999999 9999999976422 3589999999985 5
Q ss_pred CCCceeEEEEEechhhhcc---ceeceEEEeCC
Q 009539 488 HPKETLGYIDINLSDVVSN---KRINEKYHLID 517 (532)
Q Consensus 488 ~~d~~lG~~~i~L~~l~~~---~~~~~~~~L~~ 517 (532)
+++++||++.+++.++... ...+.||+|.+
T Consensus 77 ~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 77 SANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred CCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 7889999999999999883 45889999976
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.68 E-value=2e-16 Score=139.64 Aligned_cols=93 Identities=30% Similarity=0.577 Sum_probs=81.5
Q ss_pred EEEEEEEEcCCCCcCCCCC--------------CCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCC-CCE
Q 009539 255 ILHVKVVKAMNLKKKDLLG--------------ASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE-SQA 319 (532)
Q Consensus 255 ~L~V~v~~A~~L~~~d~~g--------------~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~ 319 (532)
.|.|+|++|++|+.+|..+ .+||||++.+++.+. +|++++++.||+|||+|.|.+..+. .+.
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~---kT~v~~~t~nPvWNE~f~f~v~~p~~~~~ 77 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKV---KTSVKKNSYNPEWNEQIVFPEMFPPLCER 77 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEee---ecceEcCCCCCCcceEEEEEeeCCCcCCE
Confidence 3789999999999988543 689999999987653 8999999999999999999976443 579
Q ss_pred EEEEEEEccCCCCCCeeEEEEEeCccCCCCC
Q 009539 320 VELAVYDWEQVGKHDKMGMNVVPLKELTPEE 350 (532)
Q Consensus 320 L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~~ 350 (532)
|.|+|||+|..++|++||++.+++.++....
T Consensus 78 l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~ 108 (151)
T cd04018 78 IKIQIRDWDRVGNDDVIGTHFIDLSKISNSG 108 (151)
T ss_pred EEEEEEECCCCCCCCEEEEEEEeHHHhccCC
Confidence 9999999999999999999999999987653
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.7e-16 Score=137.25 Aligned_cols=101 Identities=33% Similarity=0.549 Sum_probs=87.5
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc----CCceeeEeeCCCCCceeecEEEEEeeCC----CCCEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK----LPSKKTTVKHKNLNPEWNEEYNFTVRDP----ESQAV 320 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~----~~~~~T~v~~~t~nP~Wne~f~f~v~~~----~~~~L 320 (532)
+....+.|+|+|++|++|+..+..|.+||||++++.+.. ...++|+++++|.||+|||+|.|.+... ....|
T Consensus 11 y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l 90 (133)
T cd04009 11 YRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALL 90 (133)
T ss_pred EcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEE
Confidence 344567899999999999999888999999999997543 2457999999999999999999998653 25689
Q ss_pred EEEEEEccCCCCCCeeEEEEEeCccCCCC
Q 009539 321 ELAVYDWEQVGKHDKMGMNVVPLKELTPE 349 (532)
Q Consensus 321 ~v~v~d~d~~~~d~~iG~~~i~l~~l~~~ 349 (532)
.|+|||++..+++++||++.++|+++...
T Consensus 91 ~~~V~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 91 LFTVKDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred EEEEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence 99999999999999999999999999854
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.8e-16 Score=132.66 Aligned_cols=100 Identities=20% Similarity=0.294 Sum_probs=82.8
Q ss_pred EEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCC
Q 009539 254 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKH 333 (532)
Q Consensus 254 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d 333 (532)
+.|.|+|++|++|+..+ ..||||++.+++++ .+|++.++ .||+|||+|.|.+.+. ...|.|+|||+|.. .|
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k---~kT~v~~~-~nP~WnE~F~F~~~~~-~~~L~v~V~dkd~~-~D 72 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVK---STTIAVRG-SQPCWEQDFMFEINRL-DLGLVIELWNKGLI-WD 72 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEECCEE---eEeeECCC-CCCceeeEEEEEEcCC-CCEEEEEEEeCCCc-CC
Confidence 68999999999997654 45999999998754 48888877 5999999999999775 45599999999855 89
Q ss_pred CeeEEEEEeCccCCCCCCe--EEEEeccccc
Q 009539 334 DKMGMNVVPLKELTPEEPS--VKTLDLLKNM 362 (532)
Q Consensus 334 ~~iG~~~i~l~~l~~~~~~--~~~l~l~~~~ 362 (532)
|+||++.++|.++..+... ..|++|.+..
T Consensus 73 D~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~~ 103 (127)
T cd08394 73 TLVGTVWIPLSTIRQSNEEGPGEWLTLDSEV 103 (127)
T ss_pred CceEEEEEEhHHcccCCCCCCCccEecChHH
Confidence 9999999999999866444 6788775543
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.3e-16 Score=138.66 Aligned_cols=92 Identities=41% Similarity=0.694 Sum_probs=84.6
Q ss_pred EEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCC
Q 009539 254 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKH 333 (532)
Q Consensus 254 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d 333 (532)
|.|+|+|++|++|+..+. +.+||||+++++++. .+|++++++.||+|||+|.|.+.++ ...+.++|||++.+++|
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~---~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~d 76 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQK---VKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSKD 76 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEE---EEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCCC
Confidence 899999999999999887 899999999998654 5999999999999999999999876 68999999999999999
Q ss_pred CeeEEEEEeCccCCCCC
Q 009539 334 DKMGMNVVPLKELTPEE 350 (532)
Q Consensus 334 ~~iG~~~i~l~~l~~~~ 350 (532)
++||++.+++.++....
T Consensus 77 d~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 77 DSMGEAEIDLEPLVEAA 93 (145)
T ss_pred CEEEEEEEEHHHhhhhh
Confidence 99999999999988653
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.68 E-value=4e-16 Score=166.58 Aligned_cols=128 Identities=24% Similarity=0.469 Sum_probs=108.8
Q ss_pred eEEEEEEEEEcCCCCcCCC------------------------------------------CCCCCcEEEEEEeCCcCCc
Q 009539 253 VGILHVKVVKAMNLKKKDL------------------------------------------LGASDPYVKLKITEDKLPS 290 (532)
Q Consensus 253 ~g~L~V~v~~A~~L~~~d~------------------------------------------~g~~dpyv~v~~~~~~~~~ 290 (532)
-|.|.++|.+|++|+++|. .+++||||++.+++++ .
T Consensus 13 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~r--v 90 (868)
T PLN03008 13 HGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQAT--L 90 (868)
T ss_pred ecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcc--e
Confidence 5888999999999886331 2467999999997654 3
Q ss_pred eeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCCeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCC
Q 009539 291 KKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNE 370 (532)
Q Consensus 291 ~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~ 370 (532)
.||++++++.||+|||+|.|.+.++ ...|.|+|||+|.++ +++||++.+|++++..+...+.|+++..... +..
T Consensus 91 ~RTrVi~n~~NPvWNE~F~f~vah~-~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~----kp~ 164 (868)
T PLN03008 91 ARTRVLKNSQEPLWDEKFNISIAHP-FAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGASG----KPP 164 (868)
T ss_pred eeEEeCCCCCCCCcceeEEEEecCC-CceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccCC----CCC
Confidence 5999999999999999999999886 468999999999987 6899999999999999999999999976432 345
Q ss_pred ccccEEEEEEEEEEccCC
Q 009539 371 KSRGQLVVEFIYKPFKEE 388 (532)
Q Consensus 371 ~~~G~l~l~l~~~p~~~~ 388 (532)
+..|+|+++++|.|...+
T Consensus 165 k~~~kl~v~lqf~pv~~~ 182 (868)
T PLN03008 165 KAETAIFIDMKFTPFDQI 182 (868)
T ss_pred CCCcEEEEEEEEEEcccc
Confidence 677899999999999765
|
|
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-16 Score=138.98 Aligned_cols=122 Identities=19% Similarity=0.312 Sum_probs=99.0
Q ss_pred ccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC--CCCCCEEEEEEcC-----eeEEE
Q 009539 373 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK--HHTNPYARILFRG-----EERKT 445 (532)
Q Consensus 373 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~--~~~dpyv~v~~~~-----~~~kT 445 (532)
.|+|++++.|.|. .+.|.|+|++|+||+.. +.+||||++++.. +++||
T Consensus 1 ~G~i~~sl~y~~~-------------------------~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT 55 (137)
T cd08409 1 LGDIQISLTYNPT-------------------------LNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKT 55 (137)
T ss_pred CcEEEEEEEECCC-------------------------CCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeec
Confidence 4899999999874 67899999999999753 5799999999854 25699
Q ss_pred eeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCCCeEE
Q 009539 446 KHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRI 523 (532)
Q Consensus 446 ~vv~~t~nP~w~e~f~f~v~~~~~~-~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i 523 (532)
++++++.||+|||.|.|.+...+.. ..|.++|||.+. ++++++||++.++......++...+|+++...++..|
T Consensus 56 ~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~----~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~~~i 130 (137)
T cd08409 56 EVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGG----VRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPKELI 130 (137)
T ss_pred ccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCC----CCCcceEEEEEECCcccCCChHHHHHHHHHhCCCCce
Confidence 9999999999999999999753333 489999999985 5689999999999765555556678888776554443
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.1e-16 Score=133.25 Aligned_cols=114 Identities=19% Similarity=0.270 Sum_probs=96.7
Q ss_pred cEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC----CCCCCEEEEEEc---CeeEEEe
Q 009539 374 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK----HHTNPYARILFR---GEERKTK 446 (532)
Q Consensus 374 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~----~~~dpyv~v~~~---~~~~kT~ 446 (532)
|+|.+++.|.+. .+.|.|+|++|+||+.. +.+||||++++. .+..+|+
T Consensus 1 G~l~~~l~y~~~-------------------------~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~ 55 (123)
T cd08390 1 GRLWFSVQYDLE-------------------------EEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSK 55 (123)
T ss_pred CEEEEEEEECCC-------------------------CCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEee
Confidence 889999999863 67899999999999753 478999999984 3456999
Q ss_pred eecCCCCCcccceEEEEecCCCC-CCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeC
Q 009539 447 HVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLI 516 (532)
Q Consensus 447 vv~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 516 (532)
+++++.||+|||.|.|.+..... ...|.|+|||++. ++.+++||++.++|+++........|++|.
T Consensus 56 v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~----~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 56 VKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDR----FSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred eEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCc----CCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 99999999999999999865322 2479999999875 567899999999999998877778999985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.8e-17 Score=140.68 Aligned_cols=109 Identities=29% Similarity=0.447 Sum_probs=90.1
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeC--CcCCceeeEeeCCCCCceeecEEEEEeeC--CCCCEEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITE--DKLPSKKTTVKHKNLNPEWNEEYNFTVRD--PESQAVELAV 324 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~--~~~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~v 324 (532)
+....+.|.|+|++|+||+..+..|.+||||++++.+ .....++|++++++.||+|||+|.|.+.. .....|.|+|
T Consensus 10 y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v 89 (136)
T cd08405 10 YNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITV 89 (136)
T ss_pred EcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence 4556789999999999999999889999999999853 23345689999999999999999999753 2356899999
Q ss_pred EEccCCCCCCeeEEEEEeCccCCCCCCeEEEEecc
Q 009539 325 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 359 (532)
Q Consensus 325 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~ 359 (532)
||++..+++++||++.+++.+. +...+.|.++.
T Consensus 90 ~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~ 122 (136)
T cd08405 90 MDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDML 122 (136)
T ss_pred EECCCCCCCcEeEEEEECCccC--CchHHHHHHHH
Confidence 9999999999999999999986 33445555554
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.4e-16 Score=130.91 Aligned_cols=102 Identities=21% Similarity=0.300 Sum_probs=88.6
Q ss_pred ceEEEEEEeeeecCCCCCCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCC---CCCeEEEEEEEccccccCC
Q 009539 411 GGLLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPP---TNDRLHVEVCSVSSRIGLL 487 (532)
Q Consensus 411 ~g~L~v~i~~a~~L~~~~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~---~~~~l~v~V~d~~~~~~~~ 487 (532)
...|+|+|++|++|+ .+.+||||++++++++++|++++++.||.|||.|.|.+..+. ....|.++|||++. +
T Consensus 3 ~~~l~V~v~~a~~L~-~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~----~ 77 (111)
T cd04011 3 DFQVRVRVIEARQLV-GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS----L 77 (111)
T ss_pred cEEEEEEEEEcccCC-CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc----c
Confidence 457899999999999 678999999999999999999999999999999999986542 13579999999975 5
Q ss_pred CCCceeEEEEEechhhhcc---ceeceEEEeCC
Q 009539 488 HPKETLGYIDINLSDVVSN---KRINEKYHLID 517 (532)
Q Consensus 488 ~~d~~lG~~~i~L~~l~~~---~~~~~~~~L~~ 517 (532)
+++++||++.++|+++... .-..+||+|.+
T Consensus 78 ~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 78 RSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred ccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 6799999999999999775 34688999975
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-15 Score=130.63 Aligned_cols=109 Identities=21% Similarity=0.381 Sum_probs=92.3
Q ss_pred EEEEEeeeecCCCC---CCCCCEEEEEEcCee-EEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCCC
Q 009539 414 LVVIVHEAQDVEGK---HHTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 489 (532)
Q Consensus 414 L~v~i~~a~~L~~~---~~~dpyv~v~~~~~~-~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~ 489 (532)
|.|+|++|++|+.. +.+||||+++++++. .||++++++.||.|||.|.|.+... ...+.++|||++. ++.
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~--~~~l~v~v~d~~~----~~~ 75 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPG--FHTVSFYVLDEDT----LSR 75 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCC--CCEEEEEEEECCC----CCC
Confidence 78999999999763 689999999998765 5999999999999999999998653 3689999999985 578
Q ss_pred CceeEEEEEechhhhcc-ceeceEEEeCCCC-----CeEEEEEEE
Q 009539 490 KETLGYIDINLSDVVSN-KRINEKYHLIDSK-----NGRIQIELQ 528 (532)
Q Consensus 490 d~~lG~~~i~L~~l~~~-~~~~~~~~L~~~~-----~G~i~l~~~ 528 (532)
|++||++.++++++... ...+.|++|.+.. .|+|.|+++
T Consensus 76 d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 76 DDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred CCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 99999999999988754 3468999996532 699998864
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.67 E-value=5e-16 Score=135.86 Aligned_cols=107 Identities=24% Similarity=0.377 Sum_probs=91.8
Q ss_pred EEEEEEEcCCCCcCCCCCCCCcEEEEEEeCC-cCCceeeEeeCCCCCceeecEEEEEeeCC---------------CCCE
Q 009539 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITED-KLPSKKTTVKHKNLNPEWNEEYNFTVRDP---------------ESQA 319 (532)
Q Consensus 256 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~-~~~~~~T~v~~~t~nP~Wne~f~f~v~~~---------------~~~~ 319 (532)
|+|+|++|++|+.+ ..|.+||||++++++. ....++|++++++.||.|||+|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 7789999999999842 12346999999999999999999998765 4578
Q ss_pred EEEEEEEccCCCCCCeeEEEEEeCccCCCCCCeEEEEecccccc
Q 009539 320 VELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMD 363 (532)
Q Consensus 320 L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~ 363 (532)
|.|+|||++..+++++||++.+++.++........|++|.+...
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~~ 123 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPREA 123 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcCC
Confidence 99999999988899999999999999987777788998866543
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-15 Score=132.00 Aligned_cols=118 Identities=19% Similarity=0.296 Sum_probs=97.3
Q ss_pred ceEEEEEEeeeecCCCCCCCCCEEEEEEcCeeE-EEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCCC
Q 009539 411 GGLLVVIVHEAQDVEGKHHTNPYARILFRGEER-KTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 489 (532)
Q Consensus 411 ~g~L~v~i~~a~~L~~~~~~dpyv~v~~~~~~~-kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~ 489 (532)
..-|.|.|++|++|+.+ .+|||++.+++... ||+++.++.||.|+|.|.|.+... ...+.|.|+..+...+-..+
T Consensus 10 ~~sL~v~V~EAk~Lp~~--~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~--~~~l~v~v~k~~~~~~~~~~ 85 (146)
T cd04013 10 ENSLKLWIIEAKGLPPK--KRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPP--VSVITVNLYRESDKKKKKDK 85 (146)
T ss_pred EEEEEEEEEEccCCCCc--CCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCc--ccEEEEEEEEccCccccccC
Confidence 35689999999999985 48999999999986 999999999999999999976543 35799999866532111125
Q ss_pred CceeEEEEEechhhhccceeceEEEeCCCC-------------CeEEEEEEEEEeC
Q 009539 490 KETLGYIDINLSDVVSNKRINEKYHLIDSK-------------NGRIQIELQWRTA 532 (532)
Q Consensus 490 d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-------------~G~i~l~~~w~p~ 532 (532)
+++||++.|++.++..++..++||+|.+.. .++|+++++|.++
T Consensus 86 ~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 86 SQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred CcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 789999999999999888899999996431 3799999999874
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-15 Score=131.60 Aligned_cols=118 Identities=25% Similarity=0.412 Sum_probs=93.3
Q ss_pred EEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcC----------CceeeEeeCCCCCcee-ecEEEEEeeCCCCCEEEEE
Q 009539 255 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKL----------PSKKTTVKHKNLNPEW-NEEYNFTVRDPESQAVELA 323 (532)
Q Consensus 255 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~----------~~~~T~v~~~t~nP~W-ne~f~f~v~~~~~~~L~v~ 323 (532)
+..|++++|+||+ ++..|++||||++++.+... ..++|+++++++||+| ||+|.|.+.. .+.|.++
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~--~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP--TDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC--CCEEEEE
Confidence 4679999999998 67789999999999975432 2579999999999999 9999999853 5789999
Q ss_pred EEEccCCCC---CCeeEEEEEeCccCCCCC---CeEEEEecccccccCCCCCCccccEEEEEE
Q 009539 324 VYDWEQVGK---HDKMGMNVVPLKELTPEE---PSVKTLDLLKNMDLNDGQNEKSRGQLVVEF 380 (532)
Q Consensus 324 v~d~d~~~~---d~~iG~~~i~l~~l~~~~---~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l 380 (532)
|||++..++ +++||++.+++.++..+. ....++++.+. . ..+...|+|.+.+
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~----~-~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRR----T-PTDHVSGQLTFRF 136 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcC----C-CCCcEEEEEEEEe
Confidence 999875443 799999999999998653 24455655332 1 2466788888765
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-15 Score=133.48 Aligned_cols=111 Identities=26% Similarity=0.481 Sum_probs=93.8
Q ss_pred EEEEEEeeeecCCCC---CCCCCEEEEEEcCe-------eEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccc
Q 009539 413 LLVVIVHEAQDVEGK---HHTNPYARILFRGE-------ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSS 482 (532)
Q Consensus 413 ~L~v~i~~a~~L~~~---~~~dpyv~v~~~~~-------~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~ 482 (532)
.|+|+|++|+||+.. +.+||||++++.+. ..+|++++++.||.|||.|.|.+... ...+.++|||++.
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~l~~~v~d~~~ 78 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR--EHRLLFEVFDENR 78 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC--CCEEEEEEEECCC
Confidence 378999999999864 57999999999765 46999999999999999999998653 4579999999985
Q ss_pred cccCCCCCceeEEEEEechhhhccce------eceEEEeCCC-----CCeEEEEEEEE
Q 009539 483 RIGLLHPKETLGYIDINLSDVVSNKR------INEKYHLIDS-----KNGRIQIELQW 529 (532)
Q Consensus 483 ~~~~~~~d~~lG~~~i~L~~l~~~~~------~~~~~~L~~~-----~~G~i~l~~~w 529 (532)
++.+++||++.++++++..+.. ..+||+|... ..|+|++++.|
T Consensus 79 ----~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 79 ----LTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred ----CCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 5789999999999999987532 4589999743 36999999987
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.7e-15 Score=132.45 Aligned_cols=116 Identities=18% Similarity=0.252 Sum_probs=93.8
Q ss_pred EEEEEEeeeecCCC---CCCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCC--------CCCeEEEEEEEcc
Q 009539 413 LLVVIVHEAQDVEG---KHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPP--------TNDRLHVEVCSVS 481 (532)
Q Consensus 413 ~L~v~i~~a~~L~~---~~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~--------~~~~l~v~V~d~~ 481 (532)
.|+|+|++|++|+. .+.+||||++++++.+++|++++++.||.|||.|.|.+...+ ....+.++|||++
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 58999999999976 368999999999999999999999999999999999754321 1246999999998
Q ss_pred ccccCCCCCceeEEEEE-echhhhc---cceeceEEEeCCC--CCeEEEEEEEEEeC
Q 009539 482 SRIGLLHPKETLGYIDI-NLSDVVS---NKRINEKYHLIDS--KNGRIQIELQWRTA 532 (532)
Q Consensus 482 ~~~~~~~~d~~lG~~~i-~L~~l~~---~~~~~~~~~L~~~--~~G~i~l~~~w~p~ 532 (532)
. .+.|++||++.+ ++..+.. .....+||+|... ..|+|.|++++.|+
T Consensus 82 ~----~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 82 S----VGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFELIEV 134 (135)
T ss_pred C----CCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEEEEe
Confidence 6 567899999997 4433332 2456799999754 36999999999874
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-16 Score=139.75 Aligned_cols=108 Identities=34% Similarity=0.481 Sum_probs=89.5
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAV 324 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v 324 (532)
+....+.|.|+|++|+||+..|..|.+||||++++.+.. ....+|++++++.||.|||+|.|.+... ....|.|+|
T Consensus 10 y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v 89 (136)
T cd08404 10 YQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLV 89 (136)
T ss_pred EeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEE
Confidence 344567899999999999999988999999999996532 2356899999999999999999998642 246799999
Q ss_pred EEccCCCCCCeeEEEEEeCccCCCCCCeEEEEec
Q 009539 325 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 358 (532)
Q Consensus 325 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l 358 (532)
||++..+++++||++.+++.. .+.....|.++
T Consensus 90 ~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l 121 (136)
T cd08404 90 LDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEV 121 (136)
T ss_pred EECCCCCCCccEEEEEECCcC--CCchHHHHHHH
Confidence 999999999999999999998 34445556655
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.1e-16 Score=129.84 Aligned_cols=98 Identities=26% Similarity=0.337 Sum_probs=83.8
Q ss_pred EEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCC----CCEEEEEEEEccC
Q 009539 254 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE----SQAVELAVYDWEQ 329 (532)
Q Consensus 254 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~----~~~L~v~v~d~d~ 329 (532)
-.|+|+|++|++|+ .|.+||||++++++++ ++|++++++.||.|||+|.|.+..+. ...|.|+|||++.
T Consensus 4 ~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~---~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~ 76 (111)
T cd04011 4 FQVRVRVIEARQLV----GGNIDPVVKVEVGGQK---KYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS 76 (111)
T ss_pred EEEEEEEEEcccCC----CCCCCCEEEEEECCEe---eeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc
Confidence 47899999999998 4789999999999654 48999999999999999999986543 4689999999999
Q ss_pred CCCCCeeEEEEEeCccCCCCCCe---EEEEec
Q 009539 330 VGKHDKMGMNVVPLKELTPEEPS---VKTLDL 358 (532)
Q Consensus 330 ~~~d~~iG~~~i~l~~l~~~~~~---~~~l~l 358 (532)
.++|++||++.++++++..+..+ ..|++|
T Consensus 77 ~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L 108 (111)
T cd04011 77 LRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLL 108 (111)
T ss_pred cccCCccEEEEECCccccCCCCCcceEEEEEe
Confidence 88999999999999999776443 456665
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.2e-15 Score=132.52 Aligned_cols=90 Identities=27% Similarity=0.516 Sum_probs=81.4
Q ss_pred eEEEEEEeeeecCCCC--CCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCCC
Q 009539 412 GLLVVIVHEAQDVEGK--HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 489 (532)
Q Consensus 412 g~L~v~i~~a~~L~~~--~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~ 489 (532)
|.|+|+|++|+||+.. +.+||||+++++++..+|++++++.||+|||.|.|.+.++ ...+.++|||++. ++.
T Consensus 2 G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~--~~~l~~~V~D~d~----~~~ 75 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP--MAPLKLEVFDKDT----FSK 75 (145)
T ss_pred eEEEEEEEeeECCCCCCCCCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCC--CCEEEEEEEECCC----CCC
Confidence 7899999999999753 5799999999999999999999999999999999999875 5689999999986 678
Q ss_pred CceeEEEEEechhhhccc
Q 009539 490 KETLGYIDINLSDVVSNK 507 (532)
Q Consensus 490 d~~lG~~~i~L~~l~~~~ 507 (532)
|++||++.+++.++....
T Consensus 76 dd~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 76 DDSMGEAEIDLEPLVEAA 93 (145)
T ss_pred CCEEEEEEEEHHHhhhhh
Confidence 999999999999987643
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.3e-16 Score=133.51 Aligned_cols=109 Identities=17% Similarity=0.230 Sum_probs=87.6
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeC--CcCCceeeEeeCCCC-CceeecEEEEEeeCCC-CCEEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITE--DKLPSKKTTVKHKNL-NPEWNEEYNFTVRDPE-SQAVELAV 324 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~--~~~~~~~T~v~~~t~-nP~Wne~f~f~v~~~~-~~~L~v~v 324 (532)
|....|.|+|+|++|+||++.+..+.+||||++++-+ .+..++||+++++|. ||+|||+|.|.+.... .-.|.++|
T Consensus 9 Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v 88 (135)
T cd08692 9 FQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKL 88 (135)
T ss_pred ecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEE
Confidence 4556789999999999999886566789999999864 344567999999995 6999999999997543 34788999
Q ss_pred EEccCCCCCCeeEEEEEeCccCCCCCCeEEEEec
Q 009539 325 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 358 (532)
Q Consensus 325 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l 358 (532)
||++..+++++||++.++..+... ...++|.+.
T Consensus 89 ~d~~~~~~n~~IG~v~lG~~~~~~-~~~~hW~~m 121 (135)
T cd08692 89 YSRSSVRRKHFLGQVWISSDSSSS-EAVEQWKDT 121 (135)
T ss_pred EeCCCCcCCceEEEEEECCccCCc-hhhhhHHHH
Confidence 999988999999999999987432 234566554
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.6e-16 Score=137.09 Aligned_cols=121 Identities=20% Similarity=0.359 Sum_probs=98.6
Q ss_pred ccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEcC-----eeEE
Q 009539 373 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERK 444 (532)
Q Consensus 373 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~-----~~~k 444 (532)
.|+|.+++.|.|. .|.|.|+|++|++|+.. +.+||||++++.+ +.++
T Consensus 1 ~G~l~~~l~y~~~-------------------------~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~k 55 (136)
T cd08402 1 LGDICFSLRYVPT-------------------------AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKK 55 (136)
T ss_pred CcEEEEEeEEcCC-------------------------CCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceee
Confidence 4999999999873 68999999999999863 5799999999952 2458
Q ss_pred EeeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCCCeEE
Q 009539 445 TKHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRI 523 (532)
Q Consensus 445 T~vv~~t~nP~w~e~f~f~v~~~~~~-~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i 523 (532)
|++++++.||.|||.|.|.+...... ..|.++|||++. ++.+++||++.+++... +....+|+++...++..+
T Consensus 56 T~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~----~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~~~~~~~ 129 (136)
T cd08402 56 TTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDR----IGKNDPIGKVVLGCNAT--GAELRHWSDMLASPRRPI 129 (136)
T ss_pred ccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCC----CCCCceeEEEEECCccC--ChHHHHHHHHHhCCCCee
Confidence 99999999999999999998653222 379999999985 67899999999999763 445678888877665555
Q ss_pred E
Q 009539 524 Q 524 (532)
Q Consensus 524 ~ 524 (532)
.
T Consensus 130 ~ 130 (136)
T cd08402 130 A 130 (136)
T ss_pred e
Confidence 4
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.6e-16 Score=129.89 Aligned_cols=102 Identities=25% Similarity=0.391 Sum_probs=86.4
Q ss_pred CCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCCeeEEEEEeCccCCCC-
Q 009539 271 LLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPE- 349 (532)
Q Consensus 271 ~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~- 349 (532)
..|.+||||+++++++. ..+|++++++.||+|||+|.|.+.+...+.|.|+|||++.. +|++||.+.++|+++...
T Consensus 9 ~~G~~dPYv~v~v~~~~--~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~ 85 (111)
T cd04052 9 KTGLLSPYAELYLNGKL--VYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDAT 85 (111)
T ss_pred cCCCCCceEEEEECCEE--EEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhh
Confidence 46889999999998643 35899999999999999999999876678899999999988 899999999999998643
Q ss_pred CCeEEEEecccccccCCCCCCccccEEEEEEEEEEc
Q 009539 350 EPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF 385 (532)
Q Consensus 350 ~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 385 (532)
.....|++|. +...|+|++++.|.|.
T Consensus 86 ~~~~~w~~L~----------~~~~G~i~~~~~~~p~ 111 (111)
T cd04052 86 SVGQQWFPLS----------GNGQGRIRISALWKPV 111 (111)
T ss_pred hccceeEECC----------CCCCCEEEEEEEEecC
Confidence 3456788872 2467999999999983
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.5e-16 Score=137.73 Aligned_cols=110 Identities=34% Similarity=0.528 Sum_probs=89.5
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCC--cCCceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAV 324 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v 324 (532)
+....|.|+|+|++|++|+..+..|.+||||++++.+. ....++|++++++.||+|||+|.|.+... ....|.|+|
T Consensus 9 y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v 88 (134)
T cd08403 9 YLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAV 88 (134)
T ss_pred EcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 44567899999999999999999999999999999642 33456899999999999999999998542 235799999
Q ss_pred EEccCCCCCCeeEEEEEeCccCCCCCCeEEEEeccc
Q 009539 325 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLK 360 (532)
Q Consensus 325 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~ 360 (532)
||++..+++++||++.+++... +.....|.++..
T Consensus 89 ~d~~~~~~~~~IG~~~l~~~~~--~~~~~~w~~~~~ 122 (134)
T cd08403 89 VDYDRVGHNELIGVCRVGPNAD--GQGREHWNEMLA 122 (134)
T ss_pred EECCCCCCCceeEEEEECCCCC--CchHHHHHHHHH
Confidence 9999999999999999998733 334455655543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.2e-16 Score=131.75 Aligned_cols=99 Identities=28% Similarity=0.425 Sum_probs=86.9
Q ss_pred EEEcCCCCcCCCCCCCCcEEEEEEeCCc----CCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccC----CC
Q 009539 260 VVKAMNLKKKDLLGASDPYVKLKITEDK----LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQ----VG 331 (532)
Q Consensus 260 v~~A~~L~~~d~~g~~dpyv~v~~~~~~----~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~----~~ 331 (532)
.++|++|+..+..|++||||++++.+.. ...++|++++++.||+|||+|.|.+.....+.|.++|||+|. .+
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 4889999999988999999999998754 123699999999999999999998765456789999999997 78
Q ss_pred CCCeeEEEEEeCccCCCCCCeEEEEec
Q 009539 332 KHDKMGMNVVPLKELTPEEPSVKTLDL 358 (532)
Q Consensus 332 ~d~~iG~~~i~l~~l~~~~~~~~~l~l 358 (532)
++++||++.++++++..+.....++.|
T Consensus 86 ~~d~iG~~~i~l~~l~~~~~~~~~~~l 112 (120)
T cd04048 86 DHDFLGEAECTLGEIVSSPGQKLTLPL 112 (120)
T ss_pred CCcEEEEEEEEHHHHhcCCCcEEEEEc
Confidence 999999999999999988777788877
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.9e-16 Score=136.82 Aligned_cols=116 Identities=19% Similarity=0.304 Sum_probs=95.4
Q ss_pred ccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEcC--e---eEE
Q 009539 373 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG--E---ERK 444 (532)
Q Consensus 373 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~--~---~~k 444 (532)
+|+|.++++|.+. .+.|.|+|++|+||+.. +.+||||++++.+ + ++|
T Consensus 1 ~G~l~~~l~y~~~-------------------------~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~k 55 (136)
T cd08404 1 RGELLLSLCYQPT-------------------------TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKK 55 (136)
T ss_pred CCeEEEEEEEeCC-------------------------CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEc
Confidence 5999999999753 67899999999999863 6799999999843 2 458
Q ss_pred EeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCC
Q 009539 445 TKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK 519 (532)
Q Consensus 445 T~vv~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~ 519 (532)
|++++++.||.|||+|.|.+..... ...+.|+|||++. ++++++||++.+++.. ......+|++|.+.+
T Consensus 56 T~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~----~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~~ 125 (136)
T cd08404 56 THVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDR----VTKNEVIGRLVLGPKA--SGSGGHHWKEVCNPP 125 (136)
T ss_pred CccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCC----CCCCccEEEEEECCcC--CCchHHHHHHHHhCC
Confidence 9999999999999999999875322 2468899999986 6789999999999998 344567898886543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.8e-16 Score=180.62 Aligned_cols=117 Identities=27% Similarity=0.577 Sum_probs=106.7
Q ss_pred CceEEEEEEeeeecCCCC-CCCCCEEEEEEcCe-eEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCC
Q 009539 410 GGGLLVVIVHEAQDVEGK-HHTNPYARILFRGE-ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 487 (532)
Q Consensus 410 ~~g~L~v~i~~a~~L~~~-~~~dpyv~v~~~~~-~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~ 487 (532)
-.|.|+|+|++|+||..+ +.+||||+++++++ ++||++++++.||+|||.|+|.+.+++.+++++++|||+|. |
T Consensus 1978 ~~G~L~V~V~~a~nl~~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~----f 2053 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLKQSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT----F 2053 (2102)
T ss_pred CCcceEEEEeeccccccccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc----c
Confidence 479999999999999965 78999999999965 78999999999999999999999998767789999999985 5
Q ss_pred CCCceeEEEEEechhhhccceeceEEEeCC--CCCeE---EEEEEEEEe
Q 009539 488 HPKETLGYIDINLSDVVSNKRINEKYHLID--SKNGR---IQIELQWRT 531 (532)
Q Consensus 488 ~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~--~~~G~---i~l~~~w~p 531 (532)
+++.||.++|+|.++..++.++.||+|.+ ++.|+ |++.++|+|
T Consensus 2054 -~kd~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2054 -GKSSLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred -CCCCCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEecC
Confidence 45599999999999999999999999987 56899 999999987
|
|
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.8e-16 Score=135.05 Aligned_cols=111 Identities=23% Similarity=0.385 Sum_probs=91.4
Q ss_pred cCCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc---CCceeeEeeCCCCCceeecEEEEEeeC--CCCCEEEE
Q 009539 248 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK---LPSKKTTVKHKNLNPEWNEEYNFTVRD--PESQAVEL 322 (532)
Q Consensus 248 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~---~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v 322 (532)
.|+...+.|.|+|++|+||+..+..|.+||||++++.+.. ..++||++++++.||+|||+|.|.+.. .....|.|
T Consensus 9 ~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~ 88 (138)
T cd08408 9 EYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMF 88 (138)
T ss_pred EEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEE
Confidence 4666789999999999999999988999999999997532 234699999999999999999999874 34579999
Q ss_pred EEEEccCCCCCCeeEEEEEeCccCCCCCCeEEEEecc
Q 009539 323 AVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 359 (532)
Q Consensus 323 ~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~ 359 (532)
+|||++..+++++||++.+++.....+ ..++|.++.
T Consensus 89 ~V~~~~~~~~~~~iG~v~l~~~~~~~~-~~~hW~~~l 124 (138)
T cd08408 89 SVYNKRKMKRKEMIGWFSLGLNSSGEE-EEEHWNEMK 124 (138)
T ss_pred EEEECCCCCCCcEEEEEEECCcCCCch-HHHHHHHHH
Confidence 999999999999999999988755432 234555553
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-15 Score=131.08 Aligned_cols=108 Identities=31% Similarity=0.490 Sum_probs=91.1
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCC--cCCceeeEeeCCCCCceeecEEEEEeeCC---CCCEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDP---ESQAVELA 323 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~---~~~~L~v~ 323 (532)
++...+.|+|+|++|++|++.+..+.+||||++++.+. .....+|++++++.||+|||+|.|..... ....+.|+
T Consensus 10 y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~ 89 (123)
T cd04035 10 YDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLL 89 (123)
T ss_pred EeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEE
Confidence 44556889999999999999988889999999998542 23457999999999999999999963322 25689999
Q ss_pred EEEccCCCCCCeeEEEEEeCccCCCCCCeEEEEe
Q 009539 324 VYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLD 357 (532)
Q Consensus 324 v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~ 357 (532)
|||++.. ++++||++.++++++..++.+++++.
T Consensus 90 v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 90 VLDEDRF-GNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred EEEcCCc-CCeeEEEEEEEcccCCCCcceEeecc
Confidence 9999988 89999999999999999888877754
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.2e-15 Score=129.79 Aligned_cols=126 Identities=16% Similarity=0.240 Sum_probs=100.9
Q ss_pred CeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCC-
Q 009539 252 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQV- 330 (532)
Q Consensus 252 ~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~- 330 (532)
-...|.|.|++|++|+.++ +|||++.+++... .||+++.++.||.|+|+|+|..... ...++|.||+.+..
T Consensus 9 ~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~v--aRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~~ 80 (146)
T cd04013 9 TENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLY--ARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDKK 80 (146)
T ss_pred EEEEEEEEEEEccCCCCcC-----CceEEEEECCEEE--EEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCcc
Confidence 3567999999999998765 8999999998654 5999999999999999999986543 47899999876532
Q ss_pred C---CCCeeEEEEEeCccCCCCCCeEEEEecccccccC---CCCCCccccEEEEEEEEEEc
Q 009539 331 G---KHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLN---DGQNEKSRGQLVVEFIYKPF 385 (532)
Q Consensus 331 ~---~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~---~~~~~~~~G~l~l~l~~~p~ 385 (532)
+ ++++||.+.||+.++..+...+.|+++....... ........+.|++++.|.+.
T Consensus 81 ~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 81 KKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred ccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 2 5789999999999999998999999986542211 00113456899999999985
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.6e-16 Score=137.08 Aligned_cols=111 Identities=35% Similarity=0.554 Sum_probs=90.8
Q ss_pred cCCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeC--CcCCceeeEeeCCCCCceeecEEEEEeeCCC--CCEEEEE
Q 009539 248 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITE--DKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE--SQAVELA 323 (532)
Q Consensus 248 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~--~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~ 323 (532)
.+....|.|.|+|++|++|+..+..|.+||||++++.+ +....++|++++++.||.|||+|.|.+.... ...|.|+
T Consensus 9 ~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~ 88 (136)
T cd08402 9 RYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVT 88 (136)
T ss_pred EEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 35567789999999999999999889999999999964 2334568999999999999999999986432 3579999
Q ss_pred EEEccCCCCCCeeEEEEEeCccCCCCCCeEEEEeccc
Q 009539 324 VYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLK 360 (532)
Q Consensus 324 v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~ 360 (532)
|||++..++|++||++.+++... +.....|.++..
T Consensus 89 v~d~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~ 123 (136)
T cd08402 89 VLDYDRIGKNDPIGKVVLGCNAT--GAELRHWSDMLA 123 (136)
T ss_pred EEeCCCCCCCceeEEEEECCccC--ChHHHHHHHHHh
Confidence 99999999999999999999864 333455665543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.1e-15 Score=128.95 Aligned_cols=118 Identities=26% Similarity=0.408 Sum_probs=93.8
Q ss_pred EEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCC
Q 009539 254 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKH 333 (532)
Q Consensus 254 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d 333 (532)
..|.|+|.+|+ |...+..+.+||||+++++++ ..++|++++++.||+|||+|.|.+.. .+.|.|+|||++..++|
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~--~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~ 76 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQ--PPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKAD 76 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCc--ccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCC
Confidence 36899999998 555555789999999999865 24699999999999999999999854 57999999999999999
Q ss_pred CeeEEEEEeCccCCCCCC-----eEEEEecccccccCCCCCCccccEEEEEE
Q 009539 334 DKMGMNVVPLKELTPEEP-----SVKTLDLLKNMDLNDGQNEKSRGQLVVEF 380 (532)
Q Consensus 334 ~~iG~~~i~l~~l~~~~~-----~~~~l~l~~~~~~~~~~~~~~~G~l~l~l 380 (532)
++||++.+++.++..... ...|+++.+.. ..+....|+|++++
T Consensus 77 ~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~G~~~~~~ 124 (125)
T cd04021 77 VLLGEASLDLSDILKNHNGKLENVKLTLNLSSEN----KGSSVKVGELTVIL 124 (125)
T ss_pred cEEEEEEEEHHHhHhhcCCCccceEEEEEEEccC----CCcceeeeeEEEEe
Confidence 999999999999886432 23466664321 11357789988875
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.5e-15 Score=128.19 Aligned_cols=112 Identities=19% Similarity=0.274 Sum_probs=94.3
Q ss_pred ceEEEEEEeeeecCCCC---CCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCC
Q 009539 411 GGLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 487 (532)
Q Consensus 411 ~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~ 487 (532)
.++++|+|++|++|+.. +.+||||+++++++..+|++++++.||+|||.|.|.+.+. ...|.|+|||++. +
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~l~i~V~d~~~----~ 75 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKP--RSPIKIQVWNSNL----L 75 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCC--CCEEEEEEEECCC----C
Confidence 46899999999999863 6899999999999999999999999999999999988753 4689999999874 3
Q ss_pred CCCceeEEEEEechhhhccceeceEEEeCC-------CCCeEEEEEEEEEe
Q 009539 488 HPKETLGYIDINLSDVVSNKRINEKYHLID-------SKNGRIQIELQWRT 531 (532)
Q Consensus 488 ~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~-------~~~G~i~l~~~w~p 531 (532)
.|++||++.++++++. ....++|+|.. ...|+|.+++...+
T Consensus 76 -~d~~lG~~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 76 -CDEFLGQATLSADPND--SQTLRTLPLRKRGRDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred -CCCceEEEEEecccCC--CcCceEEEcccCCCCCCCCCCCEEEEEEEEcc
Confidence 4899999999998753 34568899942 13699999987654
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.2e-15 Score=131.19 Aligned_cols=114 Identities=18% Similarity=0.409 Sum_probs=90.7
Q ss_pred EEEEeeeec--CCC---CCCCCCEEEEEE--c---CeeEEEeeecCCCCCcccceEEEEecCCC-------CCCeEEEEE
Q 009539 415 VVIVHEAQD--VEG---KHHTNPYARILF--R---GEERKTKHVKKNRDPRWEEEFQFMLEEPP-------TNDRLHVEV 477 (532)
Q Consensus 415 ~v~i~~a~~--L~~---~~~~dpyv~v~~--~---~~~~kT~vv~~t~nP~w~e~f~f~v~~~~-------~~~~l~v~V 477 (532)
.++|..|++ |+. .+.+||||++++ . .++.||+++++|.||+|||.|.|.+.... ....|.++|
T Consensus 5 el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V 84 (155)
T cd08690 5 ELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEV 84 (155)
T ss_pred EEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEE
Confidence 455566665 555 357999999997 2 24679999999999999999999996531 134799999
Q ss_pred EEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCC---CeEEEEEEEEEe
Q 009539 478 CSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK---NGRIQIELQWRT 531 (532)
Q Consensus 478 ~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~---~G~i~l~~~w~p 531 (532)
||++. +++.|++||++.++|+.+..+.....|++|.++. +|+++++++.+.
T Consensus 85 ~d~~~---f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 85 YHKGG---FLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLRE 138 (155)
T ss_pred EeCCC---cccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEecC
Confidence 99974 1357999999999999998877778899998543 799999998875
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-15 Score=133.31 Aligned_cols=110 Identities=25% Similarity=0.446 Sum_probs=86.9
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCC--cCCceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAV 324 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v 324 (532)
+....|.|.|+|++|++|+..|..|.+||||++++.+. ....++|+++++|.||+|||+|.|.+... ....|.|+|
T Consensus 9 y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V 88 (135)
T cd08410 9 YLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTV 88 (135)
T ss_pred ECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEE
Confidence 44566899999999999999998899999999998532 23457899999999999999999998542 244799999
Q ss_pred EEccCCCCCCeeEEEEEeCccCCCCCCeEEEEecc
Q 009539 325 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 359 (532)
Q Consensus 325 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~ 359 (532)
||+|..+++++||++.+........ ....|..+.
T Consensus 89 ~d~d~~~~~~~iG~~~l~~~~~~~~-~~~~W~~l~ 122 (135)
T cd08410 89 YGHNVKSSNDFIGRIVIGQYSSGPS-ETNHWRRML 122 (135)
T ss_pred EeCCCCCCCcEEEEEEEcCccCCch-HHHHHHHHH
Confidence 9999999999999998765443321 234455543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.9e-16 Score=136.24 Aligned_cols=117 Identities=19% Similarity=0.377 Sum_probs=94.7
Q ss_pred ccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCC---CCCCCCEEEEEEc--C---eeEE
Q 009539 373 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEG---KHHTNPYARILFR--G---EERK 444 (532)
Q Consensus 373 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~---~~~~dpyv~v~~~--~---~~~k 444 (532)
+|+|.++++|.+. .+.|.|+|++|+||+. .+.+||||++++. + .+.+
T Consensus 1 ~G~l~~sl~y~~~-------------------------~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~k 55 (136)
T cd08405 1 RGELLLSLCYNPT-------------------------ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKK 55 (136)
T ss_pred CcEEEEEEEEcCC-------------------------CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCcccccc
Confidence 5999999999863 7899999999999976 3689999999983 2 2458
Q ss_pred EeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCCC
Q 009539 445 TKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKN 520 (532)
Q Consensus 445 T~vv~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~ 520 (532)
|++++++.||.|||.|.|.+..... ...|.|+|||++. ++.+++||++.+++.+. +....+|+++...++
T Consensus 56 T~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~----~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~~~ 126 (136)
T cd08405 56 TVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDR----LSRNDLIGKIYLGWKSG--GLELKHWKDMLSKPR 126 (136)
T ss_pred CcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCC----CCCCcEeEEEEECCccC--CchHHHHHHHHhCCC
Confidence 9999999999999999999864222 3479999999975 57899999999999875 334567777765543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.7e-16 Score=134.39 Aligned_cols=120 Identities=20% Similarity=0.354 Sum_probs=100.7
Q ss_pred cEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEcCe-----eEEE
Q 009539 374 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGE-----ERKT 445 (532)
Q Consensus 374 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~~-----~~kT 445 (532)
|+|++.++|.+. .+.|.|+|++|+||+.. +.+||||++++.+. ..+|
T Consensus 1 G~i~~~l~y~~~-------------------------~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T 55 (134)
T cd00276 1 GELLLSLSYLPT-------------------------AERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKT 55 (134)
T ss_pred CeEEEEEEeeCC-------------------------CCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecC
Confidence 889999999863 67899999999999863 58999999998653 4599
Q ss_pred eeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCCCeEEE
Q 009539 446 KHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQ 524 (532)
Q Consensus 446 ~vv~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~ 524 (532)
++++++.||.|||+|.|.+..... ...|.|+|||.+. ++.+++||++.+++++ .+....+||+|.++++..|.
T Consensus 56 ~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~----~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~~~~~ 129 (134)
T cd00276 56 SVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDS----VGRNEVIGQVVLGPDS--GGEELEHWNEMLASPRKPIA 129 (134)
T ss_pred cceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCC----CCCCceeEEEEECCCC--CCcHHHHHHHHHhCCCCceE
Confidence 999999999999999999876421 3589999999985 4678999999999999 55567899999887666554
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=6e-15 Score=126.08 Aligned_cols=106 Identities=25% Similarity=0.543 Sum_probs=92.0
Q ss_pred eEEEEEEeeeecCCCC---CCCCCEEEEEEcCe-eEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCC
Q 009539 412 GLLVVIVHEAQDVEGK---HHTNPYARILFRGE-ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 487 (532)
Q Consensus 412 g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~~-~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~ 487 (532)
|.|.|+|++|++|+.. +.+||||+++++++ ..+|++++++.||.|||.|.|.+... .+.|.|+|||++. +
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~--~~~L~v~v~d~~~----~ 74 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP--NQKITLEVMDYEK----V 74 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCC--CCEEEEEEEECCC----C
Confidence 6899999999999863 58999999999774 56999999999999999999998764 4689999999985 5
Q ss_pred CCCceeEEEEEechhhhccceeceEEEeCCCCCeEEE
Q 009539 488 HPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQ 524 (532)
Q Consensus 488 ~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~ 524 (532)
+.|++||++.+++.++..+ ....||.|.++..+++.
T Consensus 75 ~~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~ 110 (120)
T cd04045 75 GKDRSLGSVEINVSDLIKK-NEDGKYVEYDDEEERLK 110 (120)
T ss_pred CCCCeeeEEEEeHHHhhCC-CCCceEEecCCCcceee
Confidence 7889999999999999887 56899999888766654
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.2e-16 Score=135.93 Aligned_cols=111 Identities=24% Similarity=0.333 Sum_probs=92.2
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEeeC--CCCCEEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRD--PESQAVELAV 324 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~v 324 (532)
|....+.|.|+|++|+||+..+ .+.+||||++++.+.. ...++|++++++.||+|||+|.|.+.. .....|.|+|
T Consensus 10 y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V 88 (137)
T cd08409 10 YNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSV 88 (137)
T ss_pred ECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEE
Confidence 4455689999999999999988 7889999999997542 235689999999999999999999853 2356899999
Q ss_pred EEccCCCCCCeeEEEEEeCccCCCCCCeEEEEeccc
Q 009539 325 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLK 360 (532)
Q Consensus 325 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~ 360 (532)
||++..+++++||++.++......+...++|.++.+
T Consensus 89 ~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 89 MQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLS 124 (137)
T ss_pred EeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHh
Confidence 999999999999999999776666666666766644
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.1e-15 Score=126.77 Aligned_cols=110 Identities=17% Similarity=0.289 Sum_probs=92.1
Q ss_pred EEEEEEeeeecCCCC---CCCCCEEEEEEcCe---eEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccC
Q 009539 413 LLVVIVHEAQDVEGK---HHTNPYARILFRGE---ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGL 486 (532)
Q Consensus 413 ~L~v~i~~a~~L~~~---~~~dpyv~v~~~~~---~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~ 486 (532)
.++|+|++|++|+.. +.+||||++++++. ..||++++++.||.|||.|.|.+... ....|.|+|||++.
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~-~~~~L~i~v~d~d~---- 76 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAG-EPLWISATVWDRSF---- 76 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCC-CCCEEEEEEEECCC----
Confidence 588999999999863 57999999998653 46999999999999999999999874 35689999999975
Q ss_pred CCCCceeEEEEEechhhhcc---ceeceEEEeCCCCCeEEEEEEEE
Q 009539 487 LHPKETLGYIDINLSDVVSN---KRINEKYHLIDSKNGRIQIELQW 529 (532)
Q Consensus 487 ~~~d~~lG~~~i~L~~l~~~---~~~~~~~~L~~~~~G~i~l~~~w 529 (532)
++.+++||++.++|.++... .....|++|.. +|+|+|++.+
T Consensus 77 ~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~--~g~i~l~~~~ 120 (126)
T cd04043 77 VGKHDLCGRASLKLDPKRFGDDGLPREIWLDLDT--QGRLLLRVSM 120 (126)
T ss_pred CCCCceEEEEEEecCHHHcCCCCCCceEEEEcCC--CCeEEEEEEE
Confidence 46789999999999987543 24568999964 7999988876
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.5e-15 Score=127.63 Aligned_cols=107 Identities=23% Similarity=0.418 Sum_probs=88.7
Q ss_pred EEEEEeeeecCCCC---CCCCCEEEEEEc-CeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCCC
Q 009539 414 LVVIVHEAQDVEGK---HHTNPYARILFR-GEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 489 (532)
Q Consensus 414 L~v~i~~a~~L~~~---~~~dpyv~v~~~-~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~ 489 (532)
|+|+|++|++|+.. +.+||||+++++ .+.++|++++++.||.|||.|+|.+.. .+.|.++|||++. ++.
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~---~~~l~i~V~d~~~----~~~ 74 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP---SSIITIQVFDQKK----FKK 74 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC---CCEEEEEEEECCC----CCC
Confidence 78999999999864 579999999997 556799999999999999999999965 4689999999975 333
Q ss_pred --CceeEEEEEechhhhccc-eeceEEEeCCCC-------CeEEEEEE
Q 009539 490 --KETLGYIDINLSDVVSNK-RINEKYHLIDSK-------NGRIQIEL 527 (532)
Q Consensus 490 --d~~lG~~~i~L~~l~~~~-~~~~~~~L~~~~-------~G~i~l~~ 527 (532)
|++||++.++++++.... ....||+|...+ .|+|.+++
T Consensus 75 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 75 KDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred CCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 689999999999998654 347799994432 57777765
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=5e-15 Score=123.37 Aligned_cols=95 Identities=25% Similarity=0.426 Sum_probs=75.0
Q ss_pred EEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEc------
Q 009539 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDW------ 327 (532)
Q Consensus 256 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~------ 327 (532)
|.|+|++|+||+ |.+||||++++++.. ....+|+++++|+||+|||+|.|.+.. .+.|++.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~--s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG--SQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC--CCEEEEEEEEccccccc
Confidence 689999999996 558999999997632 345799999999999999999999964 67999999998
Q ss_pred -cCCCCCCeeEEEEEeCc--cCCCCCCeEEEEe
Q 009539 328 -EQVGKHDKMGMNVVPLK--ELTPEEPSVKTLD 357 (532)
Q Consensus 328 -d~~~~d~~iG~~~i~l~--~l~~~~~~~~~l~ 357 (532)
|..++|+++|.+.+.|. .+.....+...+.
T Consensus 74 ~d~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~ 106 (118)
T cd08686 74 LDGEGTDAIMGKGQIQLDPQSLQTKKWQEKVIS 106 (118)
T ss_pred ccccCcccEEEEEEEEECHHHhccCCeeEEEEE
Confidence 45688999988877764 4444433333343
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-15 Score=133.97 Aligned_cols=120 Identities=18% Similarity=0.324 Sum_probs=95.6
Q ss_pred cEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEcC------eeEE
Q 009539 374 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG------EERK 444 (532)
Q Consensus 374 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~------~~~k 444 (532)
|+|.+++.|.+. .+.|.|+|++|+||+.. +.+||||++++.. .++|
T Consensus 2 ~ei~~sL~Y~~~-------------------------~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~k 56 (138)
T cd08408 2 PELLLGLEYNAL-------------------------TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSK 56 (138)
T ss_pred CeEEEEeEEcCC-------------------------CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeecc
Confidence 789999999863 78999999999999863 6799999999953 1359
Q ss_pred EeeecCCCCCcccceEEEEecCCC-CCCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCCCeEE
Q 009539 445 TKHVKKNRDPRWEEEFQFMLEEPP-TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRI 523 (532)
Q Consensus 445 T~vv~~t~nP~w~e~f~f~v~~~~-~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i 523 (532)
|++++++.||+|||+|.|.+.... ....|.++|||.+. ++++++||++.+++...-. ....+|+.+..+++-.|
T Consensus 57 T~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~----~~~~~~iG~v~l~~~~~~~-~~~~hW~~~l~~~~~~v 131 (138)
T cd08408 57 TSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRK----MKRKEMIGWFSLGLNSSGE-EEEEHWNEMKESKGQQV 131 (138)
T ss_pred ceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEECCC----CCCCcEEEEEEECCcCCCc-hHHHHHHHHHhCCCCEE
Confidence 999999999999999999997532 23489999999986 5789999999999875432 23467888766544443
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.6e-15 Score=127.34 Aligned_cols=111 Identities=23% Similarity=0.442 Sum_probs=90.5
Q ss_pred EEEEEEeeeecCCCC---CCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccccc----
Q 009539 413 LLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIG---- 485 (532)
Q Consensus 413 ~L~v~i~~a~~L~~~---~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~---- 485 (532)
.|+|+|++|++|+.. +.+||||+++++++..+|++++++.||.|||.|.|.+... .+.+.++|||++....
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~--~~~l~i~v~d~d~~~~~~~~ 79 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS--SDRIKVRVWDEDDDIKSRLK 79 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCC--CCEEEEEEEECCCCcccccc
Confidence 689999999999863 5789999999998888999999999999999999998653 3589999999874200
Q ss_pred --C-CCCCceeEEEEEechhhhccceeceEEEeCCC-----CCeEEEEEE
Q 009539 486 --L-LHPKETLGYIDINLSDVVSNKRINEKYHLIDS-----KNGRIQIEL 527 (532)
Q Consensus 486 --~-~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~-----~~G~i~l~~ 527 (532)
+ .+.+++||++.+++.++.. ....||.|... .+|+|.+++
T Consensus 80 ~~~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 80 QKFTRESDDFLGQTIIEVRTLSG--EMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred eeccccCCCcceEEEEEhHHccC--CCCeEEECccCCCCCcEeEEEEEEC
Confidence 0 1368999999999998743 45789999753 268888864
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=5e-15 Score=129.21 Aligned_cols=105 Identities=21% Similarity=0.251 Sum_probs=89.4
Q ss_pred cccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEcC-------e
Q 009539 372 SRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-------E 441 (532)
Q Consensus 372 ~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~-------~ 441 (532)
..|+|.+++.|.+. .+.|.|+|++|++|+.. +.+||||++++.+ .
T Consensus 1 ~~G~l~~~l~y~~~-------------------------~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~ 55 (133)
T cd04009 1 PYGVLTVKAYYRAS-------------------------EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVP 55 (133)
T ss_pred CceEEEEEEEEcCC-------------------------CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCcccc
Confidence 36999999999752 57899999999999863 6899999999963 3
Q ss_pred eEEEeeecCCCCCcccceEEEEecCCC---CCCeEEEEEEEccccccCCCCCceeEEEEEechhhhc
Q 009539 442 ERKTKHVKKNRDPRWEEEFQFMLEEPP---TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVS 505 (532)
Q Consensus 442 ~~kT~vv~~t~nP~w~e~f~f~v~~~~---~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~ 505 (532)
.+||++++++.||+|||.|.|.+...+ ....|.++|||++. ++.+++||++.++|+++..
T Consensus 56 ~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~----~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 56 TPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDL----LGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred ccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEecCC----CCCCcEeEEEEEeHHHCCc
Confidence 569999999999999999999987531 23489999999985 5679999999999999975
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-15 Score=132.18 Aligned_cols=119 Identities=17% Similarity=0.337 Sum_probs=94.6
Q ss_pred cEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEcC-----eeEEE
Q 009539 374 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERKT 445 (532)
Q Consensus 374 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT 445 (532)
|+|.+++.|.|. .+.|+|+|++|++|+.. +.+||||++++.. ..++|
T Consensus 1 g~l~~~~~y~~~-------------------------~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT 55 (134)
T cd08403 1 GELMFSLCYLPT-------------------------AGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKT 55 (134)
T ss_pred CeEEEEEEEcCC-------------------------CCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecC
Confidence 889999999863 78999999999999863 6799999999842 24589
Q ss_pred eeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCCCeEE
Q 009539 446 KHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRI 523 (532)
Q Consensus 446 ~vv~~t~nP~w~e~f~f~v~~~~~~-~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i 523 (532)
++++++.||.|||.|.|.+...... ..+.++|||++. ++.+++||++.+++.. ..+...+|+++...++-.+
T Consensus 56 ~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~----~~~~~~IG~~~l~~~~--~~~~~~~w~~~~~~~~~~~ 128 (134)
T cd08403 56 SVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDR----VGHNELIGVCRVGPNA--DGQGREHWNEMLANPRKPI 128 (134)
T ss_pred CcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC----CCCCceeEEEEECCCC--CCchHHHHHHHHHCCCCee
Confidence 9999999999999999998643222 369999999985 5789999999999873 2344567887765544333
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-15 Score=132.89 Aligned_cols=117 Identities=21% Similarity=0.326 Sum_probs=92.5
Q ss_pred cEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEcC-----eeEEE
Q 009539 374 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERKT 445 (532)
Q Consensus 374 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT 445 (532)
|+|.++++|.|. .|.|.|+|++|+||+.. +.+||||++++.. ++++|
T Consensus 1 G~i~~~l~y~~~-------------------------~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT 55 (135)
T cd08410 1 GELLLSLNYLPS-------------------------AGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKT 55 (135)
T ss_pred CcEEEEEEECCC-------------------------CCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcC
Confidence 889999999863 68899999999999863 6899999999832 24699
Q ss_pred eeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCCC
Q 009539 446 KHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKN 520 (532)
Q Consensus 446 ~vv~~t~nP~w~e~f~f~v~~~~~~-~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~ 520 (532)
++++++.||+|||+|.|.+...... ..+.++|||++. .+++++||++.|+....- .+...+|+.+...++
T Consensus 56 ~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~----~~~~~~iG~~~l~~~~~~-~~~~~~W~~l~~~~~ 126 (135)
T cd08410 56 SCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNV----KSSNDFIGRIVIGQYSSG-PSETNHWRRMLNSQR 126 (135)
T ss_pred ccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCC----CCCCcEEEEEEEcCccCC-chHHHHHHHHHhCCC
Confidence 9999999999999999998643232 369999999975 578999999987764332 223577888766543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-15 Score=132.50 Aligned_cols=104 Identities=14% Similarity=0.320 Sum_probs=85.3
Q ss_pred ceEEEEEEeeeecCCCC---CCCCCEEEEEEcC-----eeEEEeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEcc
Q 009539 411 GGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVS 481 (532)
Q Consensus 411 ~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT~vv~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~ 481 (532)
.+.|.|+|++|+||+.. +.+||||++++.+ ...+|++++++.||+|||+|.|.+..... ...|.++|||++
T Consensus 12 ~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d 91 (133)
T cd08384 12 RRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKD 91 (133)
T ss_pred CCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCC
Confidence 78999999999999863 5799999999953 24699999999999999999999875322 347999999997
Q ss_pred ccccCCCCCceeEEEEEechhhhccceeceEEEeCCCCC
Q 009539 482 SRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKN 520 (532)
Q Consensus 482 ~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~ 520 (532)
. .+.+++||++.++++. .++...+||++...++
T Consensus 92 ~----~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~~~ 124 (133)
T cd08384 92 I----GKSNDYIGGLQLGINA--KGERLRHWLDCLKNPD 124 (133)
T ss_pred C----CCCccEEEEEEEecCC--CCchHHHHHHHHhCCC
Confidence 5 4678999999999985 3445678988866543
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.8e-15 Score=126.51 Aligned_cols=92 Identities=27% Similarity=0.422 Sum_probs=80.5
Q ss_pred CceEEEEEEeeeecCCC--CCCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCC
Q 009539 410 GGGLLVVIVHEAQDVEG--KHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 487 (532)
Q Consensus 410 ~~g~L~v~i~~a~~L~~--~~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~ 487 (532)
..|.|+|+|++|++|+. .+.+||||+++++++.+||++++++.||+|||+|.|........+.|.|+|||++. +
T Consensus 26 ~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~----~ 101 (127)
T cd04032 26 GLATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDN----G 101 (127)
T ss_pred CcEEEEEEEEECCCCCcCcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCC----C
Confidence 56899999999999985 35789999999999999999999999999999999985443345689999999986 5
Q ss_pred CCCceeEEEEEechhhhc
Q 009539 488 HPKETLGYIDINLSDVVS 505 (532)
Q Consensus 488 ~~d~~lG~~~i~L~~l~~ 505 (532)
+.|++||++.++|.....
T Consensus 102 s~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 102 WDDDLLGTCSVVPEAGVH 119 (127)
T ss_pred CCCCeeEEEEEEecCCce
Confidence 789999999999997664
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.2e-15 Score=124.35 Aligned_cols=98 Identities=22% Similarity=0.473 Sum_probs=81.9
Q ss_pred eEEEEEEeeeecCCC---C-CCCCCEEEEEEcC---eeEEEeeecCCCCCcccceEEEEecCCC--CCCeEEEEEEEccc
Q 009539 412 GLLVVIVHEAQDVEG---K-HHTNPYARILFRG---EERKTKHVKKNRDPRWEEEFQFMLEEPP--TNDRLHVEVCSVSS 482 (532)
Q Consensus 412 g~L~v~i~~a~~L~~---~-~~~dpyv~v~~~~---~~~kT~vv~~t~nP~w~e~f~f~v~~~~--~~~~l~v~V~d~~~ 482 (532)
|+|+|+|++|++|+. . +.+||||++++.+ ...+|++++++.||+|||.|.|.+.... ....|.++|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 689999999999985 3 6799999999853 3469999999999999999999886531 23589999999986
Q ss_pred cccCCCCCceeEEEEEechhhhccceeceEEEeC
Q 009539 483 RIGLLHPKETLGYIDINLSDVVSNKRINEKYHLI 516 (532)
Q Consensus 483 ~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 516 (532)
++.|++||++.+++.++... ..|+++.
T Consensus 81 ----~~~dd~lG~~~i~l~~l~~~---~~~~~~~ 107 (111)
T cd04041 81 ----FTADDRLGRVEIDLKELIED---RNWMGRR 107 (111)
T ss_pred ----CCCCCcceEEEEEHHHHhcC---CCCCccc
Confidence 57899999999999999843 4677764
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.8e-16 Score=152.20 Aligned_cols=108 Identities=33% Similarity=0.569 Sum_probs=92.8
Q ss_pred CeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEeeCCC-CCEEEEEEEEcc
Q 009539 252 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPE-SQAVELAVYDWE 328 (532)
Q Consensus 252 ~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~L~v~v~d~d 328 (532)
....|+|+|.+|+||.++|.+|.|||||++.+-+.. ..+++|++++.++||+|||+|.|.+.... +..|.|+|||+|
T Consensus 178 ~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWD 257 (683)
T KOG0696|consen 178 KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWD 257 (683)
T ss_pred cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccc
Confidence 345799999999999999999999999999997643 33568999999999999999999986543 678999999999
Q ss_pred CCCCCCeeEEEEEeCccCCCCCCeEEEEeccc
Q 009539 329 QVGKHDKMGMNVVPLKELTPEEPSVKTLDLLK 360 (532)
Q Consensus 329 ~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~ 360 (532)
+.+++|++|..++.+++|... +...|+.|+.
T Consensus 258 rTsRNDFMGslSFgisEl~K~-p~~GWyKlLs 288 (683)
T KOG0696|consen 258 RTSRNDFMGSLSFGISELQKA-PVDGWYKLLS 288 (683)
T ss_pred ccccccccceecccHHHHhhc-chhhHHHHhh
Confidence 999999999999999999876 3455666643
|
|
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.5e-15 Score=128.27 Aligned_cols=106 Identities=36% Similarity=0.571 Sum_probs=91.6
Q ss_pred EEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCC--cCCceeeEeeCCCCCceeecEEEEEeeCC-CCCEEEEEEEEccCC
Q 009539 254 GILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDP-ESQAVELAVYDWEQV 330 (532)
Q Consensus 254 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~-~~~~L~v~v~d~d~~ 330 (532)
+.|+|+|++|++|+..+..+.+||||++.+.+. ....++|++++++.||.|||+|.|.+... ..+.|.++|||++..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 789999999999999888889999999999752 22356999999999999999999998654 256899999999988
Q ss_pred CCCCeeEEEEEeCccCCCCCCeEEEEeccc
Q 009539 331 GKHDKMGMNVVPLKELTPEEPSVKTLDLLK 360 (532)
Q Consensus 331 ~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~ 360 (532)
+++++||++.++++++... ....|++|..
T Consensus 93 ~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~ 121 (131)
T cd04026 93 TRNDFMGSLSFGVSELIKM-PVDGWYKLLN 121 (131)
T ss_pred CCcceeEEEEEeHHHhCcC-ccCceEECcC
Confidence 8999999999999999865 6777888743
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.1e-14 Score=123.85 Aligned_cols=103 Identities=25% Similarity=0.473 Sum_probs=89.9
Q ss_pred eEEEEEEeeeecCCCC---CCCCCEEEEEEcCeeEEEeeecC-CCCCcccceEEEEecCCC--CCCeEEEEEEEcccccc
Q 009539 412 GLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKK-NRDPRWEEEFQFMLEEPP--TNDRLHVEVCSVSSRIG 485 (532)
Q Consensus 412 g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~~~~kT~vv~~-t~nP~w~e~f~f~v~~~~--~~~~l~v~V~d~~~~~~ 485 (532)
|.|.|+|++|++|+.. +.+||||+++++++.++|+++++ +.||.|||.|.|.+.... ....|.|+|||++.
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~--- 77 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN--- 77 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc---
Confidence 6799999999999863 58999999999998889999885 899999999999998752 24589999999975
Q ss_pred CCCCCceeEEEEEechhhhccceeceEEEeCCC
Q 009539 486 LLHPKETLGYIDINLSDVVSNKRINEKYHLIDS 518 (532)
Q Consensus 486 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 518 (532)
++.+++||++.++|.++..++....||+|...
T Consensus 78 -~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~ 109 (124)
T cd04049 78 -FSDDDFIGEATIHLKGLFEEGVEPGTAELVPA 109 (124)
T ss_pred -CCCCCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence 56799999999999999988888999999754
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-15 Score=133.20 Aligned_cols=110 Identities=34% Similarity=0.465 Sum_probs=92.6
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEeeCCC--CCEEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPE--SQAVELAV 324 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~v 324 (532)
+....+.|.|+|++|+||+..+..+.+||||++++.+.. ...++|++++++.||.|||+|.|.+.... ...|.|+|
T Consensus 9 y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v 88 (134)
T cd00276 9 YLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITV 88 (134)
T ss_pred eeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEE
Confidence 344568999999999999999888899999999997642 23468999999999999999999986543 57899999
Q ss_pred EEccCCCCCCeeEEEEEeCccCCCCCCeEEEEeccc
Q 009539 325 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLK 360 (532)
Q Consensus 325 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~ 360 (532)
||++..+++++||.+.+++++ .+...+.|+++..
T Consensus 89 ~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~ 122 (134)
T cd00276 89 VDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLA 122 (134)
T ss_pred EecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHh
Confidence 999988899999999999999 4555667777754
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.7e-14 Score=121.74 Aligned_cols=114 Identities=23% Similarity=0.366 Sum_probs=87.5
Q ss_pred EEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCC--CCEEEEEEEEccCCCCC
Q 009539 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE--SQAVELAVYDWEQVGKH 333 (532)
Q Consensus 256 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~v~d~d~~~~d 333 (532)
|.|+|++|++|+.. |.+||||++++++.. .++|+++++ .||.|||+|.|.+.... ...|.+.+||.+...++
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~--~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~ 75 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVE--VARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRD 75 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEE--eEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCe
Confidence 78999999999976 789999999998643 358999888 99999999999987643 35678888888766556
Q ss_pred CeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEE
Q 009539 334 DKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 382 (532)
Q Consensus 334 ~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~ 382 (532)
..+|.+. +..+..+...+.|++|.+.. ......|+|++++.|
T Consensus 76 ~~~g~v~--l~~~~~~~~~~~w~~L~~~~-----~~~~~~G~l~l~~~~ 117 (117)
T cd08383 76 IVIGKVA--LSKLDLGQGKDEWFPLTPVD-----PDSEVQGSVRLRARY 117 (117)
T ss_pred eEEEEEE--ecCcCCCCcceeEEECccCC-----CCCCcCceEEEEEEC
Confidence 6666654 55555566778898874321 135679999999976
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.7e-14 Score=122.95 Aligned_cols=119 Identities=29% Similarity=0.412 Sum_probs=94.5
Q ss_pred EEEEEEEEcCCCCcCC--CCCCCCcEEEEEEeCCc---CCceeeEeeCCCC-CceeecEEEEEeeCCCCCEEEEEEEEcc
Q 009539 255 ILHVKVVKAMNLKKKD--LLGASDPYVKLKITEDK---LPSKKTTVKHKNL-NPEWNEEYNFTVRDPESQAVELAVYDWE 328 (532)
Q Consensus 255 ~L~V~v~~A~~L~~~d--~~g~~dpyv~v~~~~~~---~~~~~T~v~~~t~-nP~Wne~f~f~v~~~~~~~L~v~v~d~d 328 (532)
.|+|+|++|++|+..+ ..+.+||||++++.+.. ...++|+++.++. ||+|||+|.|.+..+....|.++|||++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 6899999999999887 57889999999996532 3457899887765 9999999999998766678999999999
Q ss_pred CCCCCCeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEE
Q 009539 329 QVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 382 (532)
Q Consensus 329 ~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~ 382 (532)
.. ++++||++.++++++..+. .+++|... .......|.|.+.+.+
T Consensus 83 ~~-~~~~iG~~~~~l~~l~~g~---~~~~l~~~-----~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 83 SG-DDDFLGQACLPLDSLRQGY---RHVPLLDS-----KGEPLELSTLFVHIDI 127 (128)
T ss_pred CC-CCcEeEEEEEEhHHhcCce---EEEEecCC-----CCCCCcceeEEEEEEE
Confidence 87 8999999999999996542 34555321 1113567888888764
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.3e-14 Score=122.26 Aligned_cols=109 Identities=22% Similarity=0.342 Sum_probs=85.9
Q ss_pred EEEEEeeeecCCCCCCCCCEEEEEEcCee-EEEeeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEccccccCCCCCc
Q 009539 414 LVVIVHEAQDVEGKHHTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKE 491 (532)
Q Consensus 414 L~v~i~~a~~L~~~~~~dpyv~v~~~~~~-~kT~vv~~t~nP~w~e~f~f~v~~~~~~-~~l~v~V~d~~~~~~~~~~d~ 491 (532)
|.|+|++|+||+..+.+||||+++++++. .+|+++++ .||.|||+|.|.+...... ..+.+.++|++. .+.+.
T Consensus 2 L~v~vi~a~~l~~~~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~----~~~~~ 76 (117)
T cd08383 2 LRLRILEAKNLPSKGTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRS----KDRDI 76 (117)
T ss_pred eEEEEEEecCCCcCCCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEeccc----CCCee
Confidence 68999999999987889999999998864 69999999 9999999999999764222 367778888764 34566
Q ss_pred eeEEEEEechhhhccceeceEEEeCCCC-----CeEEEEEEEE
Q 009539 492 TLGYIDINLSDVVSNKRINEKYHLIDSK-----NGRIQIELQW 529 (532)
Q Consensus 492 ~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~w 529 (532)
.+|++.+.. +..+...++||+|.... .|+|+++++|
T Consensus 77 ~~g~v~l~~--~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 77 VIGKVALSK--LDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEEEecC--cCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 777766554 44456678999997532 6999999875
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-14 Score=122.63 Aligned_cols=95 Identities=27% Similarity=0.525 Sum_probs=79.8
Q ss_pred EEEEcCCCCcCCCCCCCCcEEEEEEeCCc---CCceeeEeeCCCCCceeecEEEEEeeCCC----CCEEEEEEEEccCCC
Q 009539 259 KVVKAMNLKKKDLLGASDPYVKLKITEDK---LPSKKTTVKHKNLNPEWNEEYNFTVRDPE----SQAVELAVYDWEQVG 331 (532)
Q Consensus 259 ~v~~A~~L~~~d~~g~~dpyv~v~~~~~~---~~~~~T~v~~~t~nP~Wne~f~f~v~~~~----~~~L~v~v~d~d~~~ 331 (532)
-.++|++|+..|..|.+||||++++.+.. ...++|++++++.||+|| +|.|.+.... .+.|.|+|||++..+
T Consensus 5 ~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~ 83 (110)
T cd04047 5 LQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSG 83 (110)
T ss_pred EEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCC
Confidence 34689999999999999999999987642 234799999999999999 7888764332 579999999999999
Q ss_pred CCCeeEEEEEeCccCCCCCCeEE
Q 009539 332 KHDKMGMNVVPLKELTPEEPSVK 354 (532)
Q Consensus 332 ~d~~iG~~~i~l~~l~~~~~~~~ 354 (532)
+|++||++.++++++......+.
T Consensus 84 ~d~~iG~~~~~l~~l~~~~~~~~ 106 (110)
T cd04047 84 KHDLIGEFETTLDELLKSSPLEF 106 (110)
T ss_pred CCcEEEEEEEEHHHHhcCCCceE
Confidence 99999999999999986655443
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-15 Score=144.74 Aligned_cols=225 Identities=24% Similarity=0.394 Sum_probs=168.6
Q ss_pred cCCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCC--cCCceeeEeeCCCCCceeecEEEEE--eeCC-CCCEEEE
Q 009539 248 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFT--VRDP-ESQAVEL 322 (532)
Q Consensus 248 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~--v~~~-~~~~L~v 322 (532)
.|+.....+..++.+|++|+.++..|..|||++..+.+. +..+.+|++..+++||.|+|+-.+. ..+. ....+++
T Consensus 87 ~y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk 166 (362)
T KOG1013|consen 87 LYDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRK 166 (362)
T ss_pred hhhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhhe
Confidence 456667789999999999999999999999999999753 2333578889999999999875543 3322 2457889
Q ss_pred EEEEccCCCCCCeeEEEEEeCccCCCCCCeEEEEecccccc--cCCCCCCccccEEEEEEEEEEccCCCCCccccccccc
Q 009539 323 AVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMD--LNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTV 400 (532)
Q Consensus 323 ~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~--~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~ 400 (532)
.|.|.+.+..++++|+..+++..+...+.+.+..-|.+.+. ..+....+.+|++.+++.|-..
T Consensus 167 ~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~--------------- 231 (362)
T KOG1013|consen 167 VVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSST--------------- 231 (362)
T ss_pred eeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCcC---------------
Confidence 99999999999999999999999987765433222222221 1222234688999999877542
Q ss_pred ccCCCCCCCCceEEEEEEeeeecCCC---CCCCCCEEEEEEcCe-----eEEEeeecCCCCCcccceEEEEecCCCC-CC
Q 009539 401 QKAPENTPAGGGLLVVIVHEAQDVEG---KHHTNPYARILFRGE-----ERKTKHVKKNRDPRWEEEFQFMLEEPPT-ND 471 (532)
Q Consensus 401 ~~~~~~~~~~~g~L~v~i~~a~~L~~---~~~~dpyv~v~~~~~-----~~kT~vv~~t~nP~w~e~f~f~v~~~~~-~~ 471 (532)
..-+.|++.+|..|.. ++.+||||..++... ++||.+.++|.+|+|++.|.|.+..... ..
T Consensus 232 ----------~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~ 301 (362)
T KOG1013|consen 232 ----------TPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYK 301 (362)
T ss_pred ----------CCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcc
Confidence 4557788899888865 478999999998532 3599999999999999999999876433 24
Q ss_pred eEEEEEEEccccccCCCCCceeEEEEEech
Q 009539 472 RLHVEVCSVSSRIGLLHPKETLGYIDINLS 501 (532)
Q Consensus 472 ~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~ 501 (532)
++.|.|||++.+ ...+++|-+...+.
T Consensus 302 kv~lsvgd~~~G----~s~d~~GG~~~g~~ 327 (362)
T KOG1013|consen 302 KVALSVGDYDIG----KSNDSIGGSMLGGY 327 (362)
T ss_pred eEEEeecccCCC----cCccCCCccccccc
Confidence 899999999853 35677776655443
|
|
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-14 Score=124.41 Aligned_cols=109 Identities=19% Similarity=0.322 Sum_probs=90.2
Q ss_pred EEEEEEeeeecCCCC---CCCCCEEEEEEcC-eeEEEeeec-CCCCCcccceEEEEecCCC---CCCeEEEEEEEccccc
Q 009539 413 LLVVIVHEAQDVEGK---HHTNPYARILFRG-EERKTKHVK-KNRDPRWEEEFQFMLEEPP---TNDRLHVEVCSVSSRI 484 (532)
Q Consensus 413 ~L~v~i~~a~~L~~~---~~~dpyv~v~~~~-~~~kT~vv~-~t~nP~w~e~f~f~v~~~~---~~~~l~v~V~d~~~~~ 484 (532)
.|+|+|++|++|+.. +.+||||++++++ ++.+|++++ ++.||.|||.|.|.+.... ....|.++|||++.
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~-- 78 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP-- 78 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC--
Confidence 378999999999863 6899999999988 778999976 5899999999999997752 15689999999975
Q ss_pred cCCCCCceeEEEEEechhhhccce-----eceEEEeCCC---CCeEEEE
Q 009539 485 GLLHPKETLGYIDINLSDVVSNKR-----INEKYHLIDS---KNGRIQI 525 (532)
Q Consensus 485 ~~~~~d~~lG~~~i~L~~l~~~~~-----~~~~~~L~~~---~~G~i~l 525 (532)
++.|++||++.++|.++..... ...||+|.+. +.|.|++
T Consensus 79 --~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~ 125 (125)
T cd04051 79 --SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF 125 (125)
T ss_pred --CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence 4679999999999999998654 3689999754 3577763
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.6e-14 Score=125.04 Aligned_cols=102 Identities=28% Similarity=0.409 Sum_probs=87.7
Q ss_pred EEEEEeeeecCCCC--CCCCCEEEEEEc----CeeEEEeeecCCCCCcccceEEEEecCCC--------------CCCeE
Q 009539 414 LVVIVHEAQDVEGK--HHTNPYARILFR----GEERKTKHVKKNRDPRWEEEFQFMLEEPP--------------TNDRL 473 (532)
Q Consensus 414 L~v~i~~a~~L~~~--~~~dpyv~v~~~----~~~~kT~vv~~t~nP~w~e~f~f~v~~~~--------------~~~~l 473 (532)
|+|.|++|+||+.. +.+||||+++++ +..++|++++++.||.|||.|.|.+.... ....+
T Consensus 1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l 80 (137)
T cd08675 1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSEL 80 (137)
T ss_pred CEEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEE
Confidence 57899999999854 789999999998 66789999999999999999999987642 23489
Q ss_pred EEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCC
Q 009539 474 HVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK 519 (532)
Q Consensus 474 ~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~ 519 (532)
.|+|||++. ++.+++||++.++|.++........||+|...+
T Consensus 81 ~i~V~d~~~----~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~ 122 (137)
T cd08675 81 RVELWHASM----VSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEcCCc----CcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence 999999985 467999999999999998777789999997643
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-13 Score=119.47 Aligned_cols=108 Identities=25% Similarity=0.478 Sum_probs=88.9
Q ss_pred EEEEEEeeeecCCC--CCCCCCEEEEEEcCe-eEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCCC
Q 009539 413 LLVVIVHEAQDVEG--KHHTNPYARILFRGE-ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 489 (532)
Q Consensus 413 ~L~v~i~~a~~L~~--~~~~dpyv~v~~~~~-~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~ 489 (532)
.|.|+|.+|+.+.. .+.+||||+++++++ ..+|++++++.||.|||.|.|.+.. .+.|.++|||++. .+.
T Consensus 3 ~L~V~i~~a~l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~---~~~l~~~V~d~~~----~~~ 75 (125)
T cd04021 3 QLQITVESAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP---QSTLEFKVWSHHT----LKA 75 (125)
T ss_pred eEEEEEEeeECCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC---CCEEEEEEEeCCC----CCC
Confidence 58899999984443 257999999999988 7899999999999999999999864 3689999999986 568
Q ss_pred CceeEEEEEechhhhccce-----eceEEEeCCCC------CeEEEEEE
Q 009539 490 KETLGYIDINLSDVVSNKR-----INEKYHLIDSK------NGRIQIEL 527 (532)
Q Consensus 490 d~~lG~~~i~L~~l~~~~~-----~~~~~~L~~~~------~G~i~l~~ 527 (532)
+++||++.++|.++..... ...|++|.... .|++.+.+
T Consensus 76 ~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 76 DVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred CcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 9999999999999987432 33589996433 68888875
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.5e-14 Score=120.52 Aligned_cols=106 Identities=21% Similarity=0.351 Sum_probs=87.5
Q ss_pred ccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEcC-----eeEE
Q 009539 373 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERK 444 (532)
Q Consensus 373 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~-----~~~k 444 (532)
.|+|++++.|.+. .+.|+|+|++|++|+.. +.+||||++++.+ ...+
T Consensus 1 ~G~~~~~l~y~~~-------------------------~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~r 55 (123)
T cd04035 1 LGTLEFTLLYDPA-------------------------NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLR 55 (123)
T ss_pred CcEEEEEEEEeCC-------------------------CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCcee
Confidence 4899999999863 67899999999999863 5799999999842 3569
Q ss_pred EeeecCCCCCcccceEEEEecCC--CCCCeEEEEEEEccccccCCCCCceeEEEEEechhhhccce
Q 009539 445 TKHVKKNRDPRWEEEFQFMLEEP--PTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKR 508 (532)
Q Consensus 445 T~vv~~t~nP~w~e~f~f~v~~~--~~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~ 508 (532)
|++++++.||.|||.|.|..... .....+.++|||++. + ++++||++.++|+++..++.
T Consensus 56 T~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~----~-~~~~iG~~~i~l~~l~~~~~ 116 (123)
T cd04035 56 TKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDR----F-GNDFLGETRIPLKKLKPNQT 116 (123)
T ss_pred eeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCC----c-CCeeEEEEEEEcccCCCCcc
Confidence 99999999999999999963321 123589999999975 4 68999999999999987653
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-13 Score=119.95 Aligned_cols=111 Identities=20% Similarity=0.351 Sum_probs=87.6
Q ss_pred EEEEEEeeeecCCCC--CCCCCEEEEEEcC-------------eeEEEeeecCCCCCcc-cceEEEEecCCCCCCeEEEE
Q 009539 413 LLVVIVHEAQDVEGK--HHTNPYARILFRG-------------EERKTKHVKKNRDPRW-EEEFQFMLEEPPTNDRLHVE 476 (532)
Q Consensus 413 ~L~v~i~~a~~L~~~--~~~dpyv~v~~~~-------------~~~kT~vv~~t~nP~w-~e~f~f~v~~~~~~~~l~v~ 476 (532)
+..|++++|+||+.. +.+||||++++.+ +.+||++++++.||+| ||.|.|.+.. ++.|.++
T Consensus 2 ~~~~~~~~A~~L~~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~---~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLKKGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP---TDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCCCccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC---CCEEEEE
Confidence 467899999999853 6899999999953 3579999999999999 9999999853 3689999
Q ss_pred EEEccccccCCCCCceeEEEEEechhhhccc---eeceEEEeCCCC-----CeEEEEEE
Q 009539 477 VCSVSSRIGLLHPKETLGYIDINLSDVVSNK---RINEKYHLIDSK-----NGRIQIEL 527 (532)
Q Consensus 477 V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~---~~~~~~~L~~~~-----~G~i~l~~ 527 (532)
|||++.. +-...+++||++.+++++++... ....||+|.... +|+|.+++
T Consensus 79 V~D~~~~-~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAK-SRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEecCCC-CCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 9998642 10112799999999999998753 356789986432 58888765
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.8e-14 Score=124.19 Aligned_cols=98 Identities=26% Similarity=0.428 Sum_probs=83.6
Q ss_pred CCCceEEEEEEeeeecCCC---CCCCCCEEEEEEcCe-----------------------------eEEEeeecCCCCCc
Q 009539 408 PAGGGLLVVIVHEAQDVEG---KHHTNPYARILFRGE-----------------------------ERKTKHVKKNRDPR 455 (532)
Q Consensus 408 ~~~~g~L~v~i~~a~~L~~---~~~~dpyv~v~~~~~-----------------------------~~kT~vv~~t~nP~ 455 (532)
....+.|.|+|++|+||+. .+.+||||++++... ..+|++++++.||.
T Consensus 24 ~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~ 103 (153)
T cd08676 24 EPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPV 103 (153)
T ss_pred CCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCc
Confidence 3468999999999999976 368999999998531 25899999999999
Q ss_pred ccceEEEEecCCCCCCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEe
Q 009539 456 WEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHL 515 (532)
Q Consensus 456 w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L 515 (532)
|||.|.|.+... ....|.|+|||++ +++||++.++++++.. ...++||+|
T Consensus 104 WnE~F~f~v~~~-~~~~L~i~V~D~d--------d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 104 WNETFRFEVEDV-SNDQLHLDIWDHD--------DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred cccEEEEEeccC-CCCEEEEEEEecC--------CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 999999999764 3568999999985 5899999999999984 457899986
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.7e-14 Score=118.24 Aligned_cols=100 Identities=27% Similarity=0.402 Sum_probs=86.7
Q ss_pred EEEEEeeeecCCCC---CCCCCEEEEEEcCee-EEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCCC
Q 009539 414 LVVIVHEAQDVEGK---HHTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 489 (532)
Q Consensus 414 L~v~i~~a~~L~~~---~~~dpyv~v~~~~~~-~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~ 489 (532)
|+|+|++|++|+.. +.+||||+++++++. .+|+++.++.+|.|||.|.|.+... ..+.+.++|||++. ++.
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~-~~~~l~~~v~d~~~----~~~ 75 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSR-VRAVLKVEVYDWDR----GGK 75 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccC-CCCEEEEEEEeCCC----CCC
Confidence 57899999999863 578999999997654 6999999999999999999999764 45689999999985 567
Q ss_pred CceeEEEEEechhhhccceeceEEEeCCC
Q 009539 490 KETLGYIDINLSDVVSNKRINEKYHLIDS 518 (532)
Q Consensus 490 d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 518 (532)
+++||++.+++.++..+.....|++|...
T Consensus 76 ~~~iG~~~~~l~~l~~~~~~~~~~~L~~~ 104 (115)
T cd04040 76 DDLLGSAYIDLSDLEPEETTELTLPLDGQ 104 (115)
T ss_pred CCceEEEEEEHHHcCCCCcEEEEEECcCC
Confidence 99999999999999887778899999754
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.9e-14 Score=149.23 Aligned_cols=98 Identities=19% Similarity=0.450 Sum_probs=86.4
Q ss_pred CCCCCEEEEEEcCee-EEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCCCCceeEEEEEechhhhcc
Q 009539 428 HHTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSN 506 (532)
Q Consensus 428 ~~~dpyv~v~~~~~~-~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~ 506 (532)
+.+||||+|.+++++ .||++++++.||+|||+|.|.|.++ ...|.++|+|++. ++ ++.||++.|+|+++..+
T Consensus 75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~--~s~L~f~VkD~D~----~g-aD~IG~a~IPL~~L~~G 147 (868)
T PLN03008 75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHP--FAYLEFQVKDDDV----FG-AQIIGTAKIPVRDIASG 147 (868)
T ss_pred CCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCC--CceEEEEEEcCCc----cC-CceeEEEEEEHHHcCCC
Confidence 578999999998765 4999999999999999999999874 3589999999885 54 68999999999999998
Q ss_pred ceeceEEEeCCC------CCeEEEEEEEEEeC
Q 009539 507 KRINEKYHLIDS------KNGRIQIELQWRTA 532 (532)
Q Consensus 507 ~~~~~~~~L~~~------~~G~i~l~~~w~p~ 532 (532)
+..+.|++|.+. ++|+|+++++|+|+
T Consensus 148 e~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv 179 (868)
T PLN03008 148 ERISGWFPVLGASGKPPKAETAIFIDMKFTPF 179 (868)
T ss_pred CceEEEEEccccCCCCCCCCcEEEEEEEEEEc
Confidence 889999999764 25899999999995
|
|
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.2e-13 Score=113.54 Aligned_cols=108 Identities=21% Similarity=0.343 Sum_probs=78.3
Q ss_pred EEEEEeeeecCCCCCCCCCEEEEEEcC-----eeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccc---c
Q 009539 414 LVVIVHEAQDVEGKHHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRI---G 485 (532)
Q Consensus 414 L~v~i~~a~~L~~~~~~dpyv~v~~~~-----~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~---~ 485 (532)
|.|+|++|+||++ .+||||+++++. ...||+++++|.||+|||+|+|.+.. .+.+.+.|||++... .
T Consensus 1 L~V~V~~A~~L~~--~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~---s~~L~~~v~d~~~~~~~~d 75 (118)
T cd08686 1 LNVIVHSAQGFKQ--SANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG---SQTLRILCYEKCYSKVKLD 75 (118)
T ss_pred CEEEEEeCCCCCC--CCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC---CCEEEEEEEEccccccccc
Confidence 5799999999974 599999999864 24699999999999999999999964 368999999984110 1
Q ss_pred CCCCCceeEEEEEech--hhhccceeceEEEeCCCCCeEEEEEEEE
Q 009539 486 LLHPKETLGYIDINLS--DVVSNKRINEKYHLIDSKNGRIQIELQW 529 (532)
Q Consensus 486 ~~~~d~~lG~~~i~L~--~l~~~~~~~~~~~L~~~~~G~i~l~~~w 529 (532)
..+.|+.+|+..+.|+ .+..+......+.|.+ -+|.++++|
T Consensus 76 ~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~~~---~~~~~s~~~ 118 (118)
T cd08686 76 GEGTDAIMGKGQIQLDPQSLQTKKWQEKVISMNG---ITVNLSIKF 118 (118)
T ss_pred ccCcccEEEEEEEEECHHHhccCCeeEEEEEecC---EEEEEEEeC
Confidence 1467999977766664 3444444455566642 255555543
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-14 Score=141.68 Aligned_cols=121 Identities=25% Similarity=0.490 Sum_probs=101.9
Q ss_pred CccccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCC---CCCCCCEEEEEEcC-----e
Q 009539 370 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEG---KHHTNPYARILFRG-----E 441 (532)
Q Consensus 370 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~---~~~~dpyv~v~~~~-----~ 441 (532)
...+|+|.+.+... ...|.|+|.+|+||-. +|.+||||++.+-. .
T Consensus 165 tE~RGrl~l~~~~~---------------------------~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~s 217 (683)
T KOG0696|consen 165 TERRGRLYLEAHIK---------------------------RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNES 217 (683)
T ss_pred hhhcceEEEEEEec---------------------------CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchh
Confidence 56789999988653 5689999999999954 58999999999943 3
Q ss_pred eEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCCCe
Q 009539 442 ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNG 521 (532)
Q Consensus 442 ~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G 521 (532)
++||++++.++||+|||+|+|.+.....+..|.|+|||+|+ .++++++|+.++.+++|+.. ..+.||.|.....|
T Consensus 218 KqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDr----TsRNDFMGslSFgisEl~K~-p~~GWyKlLsqeEG 292 (683)
T KOG0696|consen 218 KQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDR----TSRNDFMGSLSFGISELQKA-PVDGWYKLLSQEEG 292 (683)
T ss_pred hhhhhhhhhhcCccccceeEEecccccccceeEEEEecccc----cccccccceecccHHHHhhc-chhhHHHHhhhhcC
Confidence 46999999999999999999999876555689999999997 58899999999999999875 34789999766555
Q ss_pred E
Q 009539 522 R 522 (532)
Q Consensus 522 ~ 522 (532)
+
T Consensus 293 E 293 (683)
T KOG0696|consen 293 E 293 (683)
T ss_pred c
Confidence 4
|
|
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.8e-14 Score=112.02 Aligned_cols=85 Identities=35% Similarity=0.630 Sum_probs=76.9
Q ss_pred EEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCCe
Q 009539 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDK 335 (532)
Q Consensus 256 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~ 335 (532)
|+|+|++|++|+..+..+.+||||++++.+......+|+++.++.+|.|||+|.|.+..+..+.|.|+|||++..++|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 78999999999998888899999999999865445799999999999999999999877777789999999999988999
Q ss_pred eEEEE
Q 009539 336 MGMNV 340 (532)
Q Consensus 336 iG~~~ 340 (532)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.7e-14 Score=163.10 Aligned_cols=121 Identities=21% Similarity=0.415 Sum_probs=102.9
Q ss_pred CCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCC-CCEEEEEEEEccC
Q 009539 251 RPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE-SQAVELAVYDWEQ 329 (532)
Q Consensus 251 ~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~L~v~v~d~d~ 329 (532)
.-.|.|.|+|++|+||. +..|.+||||++.++.+.. +||++++++.||+|||+|.|.+.++. .+.|.++|||+|.
T Consensus 1977 ~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~--~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~ 2052 (2102)
T PLN03200 1977 CLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPP--RQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT 2052 (2102)
T ss_pred hCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCc--ccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc
Confidence 35799999999999998 4468999999999996533 48999999999999999999988765 4679999999999
Q ss_pred CCCCCeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccE---EEEEEEEEE
Q 009539 330 VGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQ---LVVEFIYKP 384 (532)
Q Consensus 330 ~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~---l~l~l~~~p 384 (532)
+++ +.||.++|++.++..+.....|++|.+ +++..|+ |++++.|.+
T Consensus 2053 f~k-d~~G~~~i~l~~vv~~~~~~~~~~L~~--------~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2053 FGK-SSLGKVTIQIDRVVMEGTYSGEYSLNP--------ESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred cCC-CCCceEEEEHHHHhcCceeeeeeecCc--------ccccCCCcceEEEEEEecC
Confidence 864 499999999999998888888888853 2456777 999998864
|
|
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-13 Score=118.87 Aligned_cols=88 Identities=22% Similarity=0.363 Sum_probs=76.5
Q ss_pred EEEEEEeeeecCCCC---CCCCCEEEEEEcCee--EEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCC
Q 009539 413 LLVVIVHEAQDVEGK---HHTNPYARILFRGEE--RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 487 (532)
Q Consensus 413 ~L~v~i~~a~~L~~~---~~~dpyv~v~~~~~~--~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~ 487 (532)
+++|.|++|++|+.. +.+||||+++++++. .||++++++.||+|||.|.|.+..+ ..+.+.++|||++. +
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~-~~~~L~~~V~d~d~----~ 75 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLP-GNSILKISVMDYDL----L 75 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCC-CCCEEEEEEEECCC----C
Confidence 478999999999863 689999999998875 4888899999999999999998754 45689999999985 5
Q ss_pred CCCceeEEEEEechhhhc
Q 009539 488 HPKETLGYIDINLSDVVS 505 (532)
Q Consensus 488 ~~d~~lG~~~i~L~~l~~ 505 (532)
+.|++||++.++|++...
T Consensus 76 ~~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 76 GSDDLIGETVIDLEDRFF 93 (124)
T ss_pred CCCceeEEEEEeeccccc
Confidence 789999999999998764
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.2e-13 Score=115.64 Aligned_cols=100 Identities=19% Similarity=0.285 Sum_probs=81.2
Q ss_pred EEeeeecCCCC---CCCCCEEEEEEcCee-------EEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccC
Q 009539 417 IVHEAQDVEGK---HHTNPYARILFRGEE-------RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGL 486 (532)
Q Consensus 417 ~i~~a~~L~~~---~~~dpyv~v~~~~~~-------~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~ 486 (532)
..++|++|+.. +.+||||++++.+.. ++|++++++.||+|||+|.|.+... ..+.+.++|||++.....
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~-~~~~l~~~V~d~d~~~~~ 83 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFE-EVQKLRFEVYDVDSKSKD 83 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeE-eeeEEEEEEEEecCCcCC
Confidence 34789999763 679999999997653 6999999999999999999987543 446899999999851000
Q ss_pred CCCCceeEEEEEechhhhccceeceEEEeCC
Q 009539 487 LHPKETLGYIDINLSDVVSNKRINEKYHLID 517 (532)
Q Consensus 487 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~ 517 (532)
++++++||++.+++++++.+.....+++|..
T Consensus 84 ~~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 84 LSDHDFLGEAECTLGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred CCCCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence 4689999999999999998777778999943
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.4e-13 Score=138.23 Aligned_cols=135 Identities=24% Similarity=0.323 Sum_probs=113.7
Q ss_pred CCccccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEcCe---e
Q 009539 369 NEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGE---E 442 (532)
Q Consensus 369 ~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~~---~ 442 (532)
+....|+|++++.|.. ....|.|+|.+|++|+.. +.+||||++++... +
T Consensus 149 ~~~~~G~l~fsl~Yd~-------------------------~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k 203 (421)
T KOG1028|consen 149 NVKAVGNLQFSLQYDF-------------------------ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGK 203 (421)
T ss_pred cceeeeeEEEEEEecc-------------------------cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCc
Confidence 3568899999999975 377899999999999874 46899999999654 4
Q ss_pred EEEeeecCCCCCcccceEEEEecCC-CCCCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCC---
Q 009539 443 RKTKHVKKNRDPRWEEEFQFMLEEP-PTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS--- 518 (532)
Q Consensus 443 ~kT~vv~~t~nP~w~e~f~f~v~~~-~~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~--- 518 (532)
++|++.++|+||+|||+|.|.+... .....|.+.|||.|. |+++++||.+.++|..+........|.++...
T Consensus 204 ~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr----fsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~ 279 (421)
T KOG1028|consen 204 FKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR----FSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTD 279 (421)
T ss_pred ceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCC----cccccEEEEEEecCccccccccceeeeccccccCC
Confidence 5999999999999999999997653 234589999999986 89999999999999988776666789998653
Q ss_pred ---CCeEEEEEEEEEeC
Q 009539 519 ---KNGRIQIELQWRTA 532 (532)
Q Consensus 519 ---~~G~i~l~~~w~p~ 532 (532)
..|+|.+++.|.|+
T Consensus 280 ~~~~~gel~~sL~Y~p~ 296 (421)
T KOG1028|consen 280 SEELAGELLLSLCYLPT 296 (421)
T ss_pred cccccceEEEEEEeecC
Confidence 13799999999885
|
|
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.7e-12 Score=111.20 Aligned_cols=108 Identities=23% Similarity=0.345 Sum_probs=88.1
Q ss_pred EEEEEEeeeecCCC-----CCCCCCEEEEEEc------CeeEEEeeecCCC-CCcccceEEEEecCCCCCCeEEEEEEEc
Q 009539 413 LLVVIVHEAQDVEG-----KHHTNPYARILFR------GEERKTKHVKKNR-DPRWEEEFQFMLEEPPTNDRLHVEVCSV 480 (532)
Q Consensus 413 ~L~v~i~~a~~L~~-----~~~~dpyv~v~~~------~~~~kT~vv~~t~-nP~w~e~f~f~v~~~~~~~~l~v~V~d~ 480 (532)
.|+|+|++|+||+. .+..||||++++. ....+|++++++. ||.|||+|.|.+..+ ....+.++|||+
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~-~~~~l~~~V~d~ 81 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVP-ELAFLRFVVYDE 81 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCC-CeEEEEEEEEeC
Confidence 68999999999975 3578999999994 3457999988776 999999999999864 345799999999
Q ss_pred cccccCCCCCceeEEEEEechhhhccceeceEEEeCCC-----CCeEEEEEEEE
Q 009539 481 SSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS-----KNGRIQIELQW 529 (532)
Q Consensus 481 ~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~-----~~G~i~l~~~w 529 (532)
+. . ++++||++.++|+++..+ .++++|.+. ..|+|.++++.
T Consensus 82 ~~----~-~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 82 DS----G-DDDFLGQACLPLDSLRQG---YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred CC----C-CCcEeEEEEEEhHHhcCc---eEEEEecCCCCCCCcceeEEEEEEE
Confidence 75 4 789999999999998543 468898653 25899988875
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.35 E-value=7e-12 Score=107.54 Aligned_cols=95 Identities=24% Similarity=0.285 Sum_probs=80.6
Q ss_pred EEEEEEEcCCCCcCC--CCCC--CCcEEEEEEeCCcCCceeeEeeCCCCC--ceeecEEEEEeeCC--------------
Q 009539 256 LHVKVVKAMNLKKKD--LLGA--SDPYVKLKITEDKLPSKKTTVKHKNLN--PEWNEEYNFTVRDP-------------- 315 (532)
Q Consensus 256 L~V~v~~A~~L~~~d--~~g~--~dpyv~v~~~~~~~~~~~T~v~~~t~n--P~Wne~f~f~v~~~-------------- 315 (532)
|+|.|.+|++++..+ ..|. +||||++.+.+....+++|.+..+++| |.||+.|.|++..+
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 799999999966443 3564 999999999987555679999999999 99999999887641
Q ss_pred ---------CCCEEEEEEEEccCCCCCCeeEEEEEeCccCCCCC
Q 009539 316 ---------ESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEE 350 (532)
Q Consensus 316 ---------~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~~ 350 (532)
....|.++|||.|.+++|++||+++++|..+..+.
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 24689999999999999999999999999887653
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.1e-12 Score=105.17 Aligned_cols=93 Identities=17% Similarity=0.377 Sum_probs=73.3
Q ss_pred EEEeeeecCCCC---CCCCCEEEEEEcCe------eEEEeeecCCCCCcccceEEEEecCCC---CCCeEEEEEEEcccc
Q 009539 416 VIVHEAQDVEGK---HHTNPYARILFRGE------ERKTKHVKKNRDPRWEEEFQFMLEEPP---TNDRLHVEVCSVSSR 483 (532)
Q Consensus 416 v~i~~a~~L~~~---~~~dpyv~v~~~~~------~~kT~vv~~t~nP~w~e~f~f~v~~~~---~~~~l~v~V~d~~~~ 483 (532)
+..++|++|+.. +.+||||++++.+. .++|++++++.||+|| .|.|.+.... ....|.++|||++.
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~- 81 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS- 81 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC-
Confidence 345689999864 57999999998653 3699999999999999 6888865322 24689999999986
Q ss_pred ccCCCCCceeEEEEEechhhhccceeceEEEe
Q 009539 484 IGLLHPKETLGYIDINLSDVVSNKRINEKYHL 515 (532)
Q Consensus 484 ~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L 515 (532)
+++|++||++.++++++..++ ..+|.+
T Consensus 82 ---~~~d~~iG~~~~~l~~l~~~~--~~~~~~ 108 (110)
T cd04047 82 ---SGKHDLIGEFETTLDELLKSS--PLEFEL 108 (110)
T ss_pred ---CCCCcEEEEEEEEHHHHhcCC--CceEEe
Confidence 578999999999999998543 345544
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.6e-11 Score=125.18 Aligned_cols=122 Identities=26% Similarity=0.366 Sum_probs=96.3
Q ss_pred ccceeeeCCccccc----CCCCCccCCCCeEEEEEEEEEcCCCCc-----CCCCCCCCcEEEEEEeCCc--CCceeeEee
Q 009539 228 VANMYLWPKTLEVP----ILDPSKAYRRPVGILHVKVVKAMNLKK-----KDLLGASDPYVKLKITEDK--LPSKKTTVK 296 (532)
Q Consensus 228 ~~~~~v~P~~~~~~----l~~~~~~~~~~~g~L~V~v~~A~~L~~-----~d~~g~~dpyv~v~~~~~~--~~~~~T~v~ 296 (532)
-++++..|..|..+ .+++.. .......|.|+|+.|.+++. .+.....||||+|.+.|-. ...++|++.
T Consensus 380 ~CGYVLKP~~Lr~~~~~~~FdP~~-~~~~~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~ 458 (537)
T PLN02223 380 GCGYVKKPDFLLNAGPSGVFYPTE-NPVVVKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVK 458 (537)
T ss_pred CCCceECChhhccCCcccccCCCC-CcccceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeC
Confidence 58889999887543 223321 12235789999999998751 1223457999999997632 234578888
Q ss_pred CCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCCeeEEEEEeCccCCCCC
Q 009539 297 HKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEE 350 (532)
Q Consensus 297 ~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~~ 350 (532)
+|+.||+|||+|.|.+..++-..|+|+|+|+|..++|+++|++.+|+..|..+-
T Consensus 459 nNg~nPvWne~F~F~i~~PELAlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~Gy 512 (537)
T PLN02223 459 NNEWKPTWGEEFTFPLTYPDLALISFEVYDYEVSTADAFCGQTCLPVSELIEGI 512 (537)
T ss_pred CCCcCceecceeEEEEEccCceEEEEEEEecCCCCCCcEEEEEecchHHhcCCc
Confidence 999999999999999999888889999999998888999999999999999885
|
|
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=99.34 E-value=1e-11 Score=101.87 Aligned_cols=97 Identities=42% Similarity=0.687 Sum_probs=83.3
Q ss_pred EEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCC
Q 009539 255 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHD 334 (532)
Q Consensus 255 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~ 334 (532)
.|.|+|++|++|......+..+|||++++.+......+|+++.++.||.|||+|.|.+.....+.|.++|||.+..+.+.
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~ 80 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDD 80 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCc
Confidence 36899999999998876667899999999865323468999999999999999999998765789999999999877899
Q ss_pred eeEEEEEeCccCCCCCC
Q 009539 335 KMGMNVVPLKELTPEEP 351 (532)
Q Consensus 335 ~iG~~~i~l~~l~~~~~ 351 (532)
++|.+.+++.++..+..
T Consensus 81 ~~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 81 FIGQVTIPLSDLLLGGR 97 (101)
T ss_pred eeEEEEEEHHHcccCcc
Confidence 99999999999876643
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.3e-12 Score=135.48 Aligned_cols=92 Identities=25% Similarity=0.437 Sum_probs=82.6
Q ss_pred eEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCC
Q 009539 253 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGK 332 (532)
Q Consensus 253 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~ 332 (532)
.-..+|.|++|-+|.+.|.+|++|||+++.+++... ..++..+.+|+||+|++.|.+....+....+.++|||+|..++
T Consensus 612 ~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~-~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~ 690 (1105)
T KOG1326|consen 612 KCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRT-LDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQ 690 (1105)
T ss_pred eeeEEEEEEEeeeccccCCCCCcCceeeeeeccchh-hhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccc
Confidence 345779999999999999999999999999997653 3478889999999999999999888878899999999999999
Q ss_pred CCeeEEEEEeCcc
Q 009539 333 HDKMGMNVVPLKE 345 (532)
Q Consensus 333 d~~iG~~~i~l~~ 345 (532)
|+.+|+..++|+.
T Consensus 691 d~~iget~iDLEn 703 (1105)
T KOG1326|consen 691 DEKIGETTIDLEN 703 (1105)
T ss_pred cchhhceehhhhh
Confidence 9999999999864
|
|
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.5e-12 Score=127.38 Aligned_cols=124 Identities=26% Similarity=0.446 Sum_probs=98.3
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEcc
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWE 328 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d 328 (532)
..+-...++++|+.|.+|..+|..|++||||...++..+ +||+++...+||+|||.|+|..++. ++.+++.|||+|
T Consensus 290 sskwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktk---rrtrti~~~lnpvw~ekfhfechns-tdrikvrvwded 365 (1283)
T KOG1011|consen 290 SSKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTK---RRTRTIHQELNPVWNEKFHFECHNS-TDRIKVRVWDED 365 (1283)
T ss_pred ccccceeeEEeeeecccceecccCCCCCCcEEEeecccc---hhhHhhhhccchhhhhheeeeecCC-CceeEEEEecCc
Confidence 344567899999999999999999999999999998655 4899999999999999999999875 689999999998
Q ss_pred CC-----------CCCCeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEE
Q 009539 329 QV-----------GKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 383 (532)
Q Consensus 329 ~~-----------~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~ 383 (532)
.. ..|||+|+..|.+..|...- +.|+.|-+..+ .+...|-|++.+...
T Consensus 366 ~dlksklrqkl~resddflgqtvievrtlsgem--dvwynlekrtd-----ksavsgairlhisve 424 (1283)
T KOG1011|consen 366 NDLKSKLRQKLTRESDDFLGQTVIEVRTLSGEM--DVWYNLEKRTD-----KSAVSGAIRLHISVE 424 (1283)
T ss_pred ccHHHHHHHHhhhcccccccceeEEEEecccch--hhhcchhhccc-----hhhccceEEEEEEEE
Confidence 42 35899999999999887653 44555433221 245677666655443
|
|
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=99.28 E-value=3e-11 Score=98.82 Aligned_cols=100 Identities=41% Similarity=0.628 Sum_probs=84.1
Q ss_pred EEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCCe
Q 009539 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDK 335 (532)
Q Consensus 256 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~ 335 (532)
|.|+|++|++|......+..+|||.+.+.+. ...+|.++.++.||.|||.|.|.+.......+.++||+.+..+.+++
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~--~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 78 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGK--QKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDF 78 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccC--ceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCce
Confidence 5789999999988766778999999999872 23589999999999999999999976456889999999998877899
Q ss_pred eEEEEEeCccCC-CCCCeEEEEe
Q 009539 336 MGMNVVPLKELT-PEEPSVKTLD 357 (532)
Q Consensus 336 iG~~~i~l~~l~-~~~~~~~~l~ 357 (532)
+|.+.+++.++. .......|++
T Consensus 79 ig~~~~~l~~l~~~~~~~~~~~~ 101 (102)
T cd00030 79 LGEVEIPLSELLDSGKEGELWLP 101 (102)
T ss_pred eEEEEEeHHHhhhcCCcCcceec
Confidence 999999999998 4444445543
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-11 Score=98.10 Aligned_cols=79 Identities=34% Similarity=0.632 Sum_probs=69.0
Q ss_pred EEEEEeeeecCCC---CCCCCCEEEEEEcC---eeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCC
Q 009539 414 LVVIVHEAQDVEG---KHHTNPYARILFRG---EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 487 (532)
Q Consensus 414 L~v~i~~a~~L~~---~~~~dpyv~v~~~~---~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~ 487 (532)
|+|+|++|+||+. .+..||||++++++ ..++|++++++.+|.|+|.|.|.+..+ ..+.|.|+|||++. +
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~-~~~~l~~~V~~~~~----~ 75 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDP-DLDSLSFEVWDKDS----F 75 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHG-CGTEEEEEEEEETS----S
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecc-cccceEEEEEECCC----C
Confidence 6899999999987 35899999999988 668999999999999999999998765 34569999999986 4
Q ss_pred CCCceeEEEE
Q 009539 488 HPKETLGYID 497 (532)
Q Consensus 488 ~~d~~lG~~~ 497 (532)
+.|++||++.
T Consensus 76 ~~~~~iG~~~ 85 (85)
T PF00168_consen 76 GKDELIGEVK 85 (85)
T ss_dssp SSEEEEEEEE
T ss_pred CCCCEEEEEC
Confidence 6699999874
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.7e-12 Score=127.30 Aligned_cols=120 Identities=21% Similarity=0.400 Sum_probs=98.5
Q ss_pred CCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcc
Q 009539 405 ENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVS 481 (532)
Q Consensus 405 ~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~ 481 (532)
++...-++.+++++.+|++|..+ |++||||.+.++..+++|+++....||+|||.|.|.+++. .+.|.++|||++
T Consensus 288 egsskwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechns--tdrikvrvwded 365 (1283)
T KOG1011|consen 288 EGSSKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNS--TDRIKVRVWDED 365 (1283)
T ss_pred ccccccceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCC--CceeEEEEecCc
Confidence 34455678999999999999763 7899999999999999999999999999999999999984 568999999997
Q ss_pred ccc-cC------CCCCceeEEEEEechhhhccceeceEEEeCCC-----CCeEEEEEEE
Q 009539 482 SRI-GL------LHPKETLGYIDINLSDVVSNKRINEKYHLIDS-----KNGRIQIELQ 528 (532)
Q Consensus 482 ~~~-~~------~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~-----~~G~i~l~~~ 528 (532)
.+. +- -.+|++||+..|....+ .+.++-||.|+.. -+|.|++.+.
T Consensus 366 ~dlksklrqkl~resddflgqtvievrtl--sgemdvwynlekrtdksavsgairlhis 422 (1283)
T KOG1011|consen 366 NDLKSKLRQKLTRESDDFLGQTVIEVRTL--SGEMDVWYNLEKRTDKSAVSGAIRLHIS 422 (1283)
T ss_pred ccHHHHHHHHhhhcccccccceeEEEEec--ccchhhhcchhhccchhhccceEEEEEE
Confidence 530 00 13689999999998876 3467899999753 2688887765
|
|
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.4e-10 Score=120.77 Aligned_cols=128 Identities=27% Similarity=0.379 Sum_probs=97.3
Q ss_pred ccceeeeCCccccc-----CCCCCccCCCCeEEEEEEEEEcCCCCcC------CCCCCCCcEEEEEEeCCc--CCceeeE
Q 009539 228 VANMYLWPKTLEVP-----ILDPSKAYRRPVGILHVKVVKAMNLKKK------DLLGASDPYVKLKITEDK--LPSKKTT 294 (532)
Q Consensus 228 ~~~~~v~P~~~~~~-----l~~~~~~~~~~~g~L~V~v~~A~~L~~~------d~~g~~dpyv~v~~~~~~--~~~~~T~ 294 (532)
-+++++.|..|... ..++... ......|.|+|+.|.+++.. +.....||||++.+-|-. ...++|+
T Consensus 440 ~cGYVlKP~~lr~~~~~~~~fdp~~~-~~~~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTk 518 (599)
T PLN02952 440 GCGYLKKPDFLMKKGFHDEVFDPKKK-LPVKKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTK 518 (599)
T ss_pred CCCceECCHHHcccCCcccccCCCCC-CCccceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeee
Confidence 47888899877431 2222221 12356899999999987531 112345999999997632 2346899
Q ss_pred eeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCCeeEEEEEeCccCCCCCCeEEEEecc
Q 009539 295 VKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 359 (532)
Q Consensus 295 v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~ 359 (532)
++.++.||+|||+|.|.+..++-..++|+|||+|..+.++++|++.+|+..|..+-. +++|.
T Consensus 519 vi~nN~nPvWnE~F~F~i~~PELAllrf~V~D~D~~~~ddfiGq~~lPv~~Lr~GyR---~VpL~ 580 (599)
T PLN02952 519 IIEDNWYPAWNEEFSFPLTVPELALLRIEVREYDMSEKDDFGGQTCLPVSELRPGIR---SVPLH 580 (599)
T ss_pred eccCCCCcccCCeeEEEEEcCCccEEEEEEEecCCCCCCCeEEEEEcchhHhcCCce---eEeCc
Confidence 999999999999999999888777899999999988889999999999999998853 55653
|
|
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-10 Score=124.29 Aligned_cols=128 Identities=18% Similarity=0.337 Sum_probs=104.8
Q ss_pred eEEEEEEEEEcCCCCcCC------------------CCCCCCcEEEEEEeCCcCCceeeEeeCCC-CCceeecEEEEEee
Q 009539 253 VGILHVKVVKAMNLKKKD------------------LLGASDPYVKLKITEDKLPSKKTTVKHKN-LNPEWNEEYNFTVR 313 (532)
Q Consensus 253 ~g~L~V~v~~A~~L~~~d------------------~~g~~dpyv~v~~~~~~~~~~~T~v~~~t-~nP~Wne~f~f~v~ 313 (532)
-|.|.|+|.+|++|++.+ ..+.+||||.+.+++.++ .||+++.+. .||+|||+|.+.+.
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v--~rtr~~~~~~~~p~w~e~f~i~~a 84 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARV--GRTRKIENEPKNPRWYESFHIYCA 84 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEE--EEEeecCCCCCCCccccceEEeec
Confidence 589999999999998631 125679999999997664 699999885 69999999999998
Q ss_pred CCCCCEEEEEEEEccCCCCCCeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEEccCC
Q 009539 314 DPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEE 388 (532)
Q Consensus 314 ~~~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~ 388 (532)
.. ...+.|.|.|.|.++ ..+||.+.+|.+++..++..+.|+++.... .+..+...+|+++++|.|...+
T Consensus 85 h~-~~~v~f~vkd~~~~g-~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~----~~p~~~~~~~~~~~~f~~~~~~ 153 (808)
T PLN02270 85 HM-ASNIIFTVKDDNPIG-ATLIGRAYIPVEEILDGEEVDRWVEILDND----KNPIHGGSKIHVKLQYFEVTKD 153 (808)
T ss_pred cC-cceEEEEEecCCccC-ceEEEEEEEEHHHhcCCCccccEEeccCCC----CCcCCCCCEEEEEEEEEEcccC
Confidence 76 478999999999876 559999999999999998889999986531 1112334599999999997664
|
|
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.5e-10 Score=119.28 Aligned_cols=123 Identities=22% Similarity=0.266 Sum_probs=95.8
Q ss_pred ccceeeeCCcccccC-----CCCCccCCCCeEEEEEEEEEcCCCCcC------CCCCCCCcEEEEEEeCCc--CCceeeE
Q 009539 228 VANMYLWPKTLEVPI-----LDPSKAYRRPVGILHVKVVKAMNLKKK------DLLGASDPYVKLKITEDK--LPSKKTT 294 (532)
Q Consensus 228 ~~~~~v~P~~~~~~l-----~~~~~~~~~~~g~L~V~v~~A~~L~~~------d~~g~~dpyv~v~~~~~~--~~~~~T~ 294 (532)
-+++++.|..|..+- +++.. ...+..+|.|+|+.+.+++.. +.....||||+|.+-|-. ...++|+
T Consensus 439 ~CGYVLKP~~Lr~~~~~~~~fdP~~-~~~~~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~ 517 (598)
T PLN02230 439 GCGYVKKPDFLMDAGPNGQDFYPKD-NSCPKKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTK 517 (598)
T ss_pred CCCceECCHHhcCCCccccccCCCc-CCCcCcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCccccee
Confidence 478899998876531 22221 112457899999999987421 222346999999997632 2346899
Q ss_pred eeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCCeeEEEEEeCccCCCCCC
Q 009539 295 VKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEP 351 (532)
Q Consensus 295 v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~~~ 351 (532)
+..++.||+|||+|.|.+..++-..|+|+|+|+|...+|+++|+..+|+..|..+-.
T Consensus 518 v~~n~~nP~Wneef~F~l~vPELAllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~GyR 574 (598)
T PLN02230 518 IEYDTWTPIWNKEFIFPLAVPELALLRVEVHEHDINEKDDFGGQTCLPVSEIRQGIH 574 (598)
T ss_pred ccCCCCCCccCCeeEEEEEcCceeEEEEEEEECCCCCCCCEEEEEEcchHHhhCccc
Confidence 999999999999999999988888999999999988899999999999999998843
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.9e-10 Score=121.00 Aligned_cols=167 Identities=25% Similarity=0.334 Sum_probs=116.9
Q ss_pred CCCCCCCeeeEEEEEccCC-ceEEEEEEEccccccCCchhhhhhh--------ccceeeeCCccccc--CCCCCcc-CCC
Q 009539 184 PLVPAFPCFANIYVSLMEK-PHVDFGLKLVGADLMSIPGLYRFVQ--------VANMYLWPKTLEVP--ILDPSKA-YRR 251 (532)
Q Consensus 184 pl~~~~P~~~~v~~sf~~~-P~id~~~~~~g~~~~~~P~l~~~i~--------~~~~~v~P~~~~~~--l~~~~~~-~~~ 251 (532)
-|+..+|.--.++-|=.++ +-..-++..+ +=-+.-||..-+++ -|+++..|..+..+ .+++... ...
T Consensus 536 ~L~RvYP~~~R~dSSNynPq~~W~~G~QmV-AlN~Qt~G~~l~L~~G~Fr~NGgCGYVlKP~~L~~~~~~F~P~~~~~~~ 614 (746)
T KOG0169|consen 536 NLLRVYPKGLRVDSSNYNPQEFWNHGCQMV-ALNFQTPGRMLDLNQGMFRANGGCGYVLKPDFLLDSGSTFDPKSNLPPV 614 (746)
T ss_pred heeeecCCccccCCCCCChHHHHhcCceEE-EEecCCCChhhhhhhhhhccCCCccceECcHHHcCCCCccCCCCCCCCC
Confidence 3555566655555553332 2223333332 11233566666665 58899999987763 2344222 222
Q ss_pred CeEEEEEEEEEcCCCCcCCC----CCCCCcEEEEEEeCCc--CCceeeE-eeCCCCCceeecEEEEEeeCCCCCEEEEEE
Q 009539 252 PVGILHVKVVKAMNLKKKDL----LGASDPYVKLKITEDK--LPSKKTT-VKHKNLNPEWNEEYNFTVRDPESQAVELAV 324 (532)
Q Consensus 252 ~~g~L~V~v~~A~~L~~~d~----~g~~dpyv~v~~~~~~--~~~~~T~-v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v 324 (532)
.. +|.|+|+.+.+++..-. ...+||||.+++.|-. ....+|+ +..|+-||.|+|+|+|.+..|+-..|+|.|
T Consensus 615 ~~-tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V 693 (746)
T KOG0169|consen 615 KK-TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEV 693 (746)
T ss_pred Cc-eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEE
Confidence 33 89999999997654322 2357999999987633 2245788 677999999999999999999889999999
Q ss_pred EEccCCCCCCeeEEEEEeCccCCCCCCe
Q 009539 325 YDWEQVGKHDKMGMNVVPLKELTPEEPS 352 (532)
Q Consensus 325 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~ 352 (532)
+|+|..++|+|+|+..+|+.+|..|-.+
T Consensus 694 ~d~d~~~~ddF~GQ~tlP~~~L~~GyRh 721 (746)
T KOG0169|consen 694 HDYDYIGKDDFIGQTTLPVSELRQGYRH 721 (746)
T ss_pred EecCCCCcccccceeeccHHHhhCceee
Confidence 9999999999999999999999988543
|
|
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.2e-10 Score=91.37 Aligned_cols=97 Identities=33% Similarity=0.542 Sum_probs=81.9
Q ss_pred EEEEEeeeecCCC---CCCCCCEEEEEEcC-eeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCCC
Q 009539 414 LVVIVHEAQDVEG---KHHTNPYARILFRG-EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 489 (532)
Q Consensus 414 L~v~i~~a~~L~~---~~~~dpyv~v~~~~-~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~ 489 (532)
|.|.|++|++|+. .+.++|||.+++.+ ...+|+++.++.||.|++.|.|.+... ....+.++|++.+. ...
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~-~~~~l~i~v~~~~~----~~~ 75 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDP-ESDTLTVEVWDKDR----FSK 75 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCC-CCCEEEEEEEecCC----CCC
Confidence 4689999999975 35799999999998 778999999999999999999999863 34689999999975 346
Q ss_pred CceeEEEEEechhhh-ccceeceEEEe
Q 009539 490 KETLGYIDINLSDVV-SNKRINEKYHL 515 (532)
Q Consensus 490 d~~lG~~~i~L~~l~-~~~~~~~~~~L 515 (532)
+.++|++.+++.++. .......|++|
T Consensus 76 ~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 76 DDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred CceeEEEEEeHHHhhhcCCcCcceecC
Confidence 899999999999998 55555677764
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.3e-10 Score=120.28 Aligned_cols=115 Identities=17% Similarity=0.382 Sum_probs=97.4
Q ss_pred ceEEEEEEeeeecCCC---------------------CCCCCCEEEEEEcCeeE-EEeeecCC-CCCcccceEEEEecCC
Q 009539 411 GGLLVVIVHEAQDVEG---------------------KHHTNPYARILFRGEER-KTKHVKKN-RDPRWEEEFQFMLEEP 467 (532)
Q Consensus 411 ~g~L~v~i~~a~~L~~---------------------~~~~dpyv~v~~~~~~~-kT~vv~~t-~nP~w~e~f~f~v~~~ 467 (532)
-|.|.++|.+|++|+. ++.+||||.|.+++.+. ||+++.+. .||.|+|.|..+|...
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 4778888999988863 13679999999998876 99999885 6999999999999864
Q ss_pred CCCCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCC------CeEEEEEEEEEeC
Q 009539 468 PTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK------NGRIQIELQWRTA 532 (532)
Q Consensus 468 ~~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~------~G~i~l~~~w~p~ 532 (532)
...+.+.|.|.+- + +..+||.+.|+..+++.++.++.||++.+.. +.+|+++++|.|+
T Consensus 87 --~~~v~f~vkd~~~----~-g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 150 (808)
T PLN02270 87 --ASNIIFTVKDDNP----I-GATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEV 150 (808)
T ss_pred --cceEEEEEecCCc----c-CceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEc
Confidence 3689999999874 3 4669999999999999998999999997642 4699999999985
|
|
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.7e-11 Score=128.46 Aligned_cols=89 Identities=21% Similarity=0.315 Sum_probs=77.6
Q ss_pred ceEEEEEEeeeecCCC---CCCCCCEEEEEEcCeeE--EEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccccc
Q 009539 411 GGLLVVIVHEAQDVEG---KHHTNPYARILFRGEER--KTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIG 485 (532)
Q Consensus 411 ~g~L~v~i~~a~~L~~---~~~~dpyv~v~~~~~~~--kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~ 485 (532)
.-.++|++.+|-+|.. +|.+|||+++.++++.. ++..+.+|.||+|++.|++.+..+ ....++++|+|+|.
T Consensus 612 ~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp-~ek~l~v~vyd~D~--- 687 (1105)
T KOG1326|consen 612 KCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLP-FEKDLIVEVYDHDL--- 687 (1105)
T ss_pred eeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccc-hhhcceeEEEEeec---
Confidence 4467899999999975 47899999999999874 888899999999999999999875 66789999999986
Q ss_pred CCCCCceeEEEEEechhhh
Q 009539 486 LLHPKETLGYIDINLSDVV 504 (532)
Q Consensus 486 ~~~~d~~lG~~~i~L~~l~ 504 (532)
++.|+.+|+.+++|++-.
T Consensus 688 -~~~d~~iget~iDLEnR~ 705 (1105)
T KOG1326|consen 688 -EAQDEKIGETTIDLENRW 705 (1105)
T ss_pred -ccccchhhceehhhhhcc
Confidence 678999999999998643
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.3e-09 Score=114.86 Aligned_cols=123 Identities=22% Similarity=0.262 Sum_probs=94.4
Q ss_pred ccceeeeCCcccccCC-----CCCccCCCCeEEEEEEEEEcCCCC----cCC--CCCCCCcEEEEEEeCCc--CCceeeE
Q 009539 228 VANMYLWPKTLEVPIL-----DPSKAYRRPVGILHVKVVKAMNLK----KKD--LLGASDPYVKLKITEDK--LPSKKTT 294 (532)
Q Consensus 228 ~~~~~v~P~~~~~~l~-----~~~~~~~~~~g~L~V~v~~A~~L~----~~d--~~g~~dpyv~v~~~~~~--~~~~~T~ 294 (532)
-+++++.|..|..+-. ++... ......|.|+|+.+.+++ ... .....||||+|.+.|-. ..+++|+
T Consensus 422 ~cGYVLKP~~lr~~~~~~~~fdp~~~-~~~~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk 500 (581)
T PLN02222 422 GCGYIKKPDLLLKSGSDSDIFDPKAT-LPVKTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTK 500 (581)
T ss_pred CCceEECCHHhccCCccccccCCCCC-CCccceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeE
Confidence 4788999988764422 22111 122468999999998753 211 22356999999997532 2346899
Q ss_pred eeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCCeeEEEEEeCccCCCCCC
Q 009539 295 VKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEP 351 (532)
Q Consensus 295 v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~~~ 351 (532)
++.++.||+|||+|.|.+..++-..|+|+|+|+|..+.|+++|++.+|+..|..|-.
T Consensus 501 ~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~d~D~~~~ddfigq~~lPv~~Lr~GyR 557 (581)
T PLN02222 501 TLEDNWIPAWDEVFEFPLTVPELALLRLEVHEYDMSEKDDFGGQTCLPVWELSQGIR 557 (581)
T ss_pred ecCCCCCcccCCeeEEEEEcCceeEEEEEEEECCCCCCCcEEEEEEcchhhhhCccc
Confidence 999999999999999999888778999999999988889999999999999998843
|
|
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.8e-10 Score=97.67 Aligned_cols=90 Identities=23% Similarity=0.379 Sum_probs=75.5
Q ss_pred EEEEEeeeecCCC-----CC--CCCCEEEEEEcC---eeEEEeeecCCCC--CcccceEEEEecCCCC------------
Q 009539 414 LVVIVHEAQDVEG-----KH--HTNPYARILFRG---EERKTKHVKKNRD--PRWEEEFQFMLEEPPT------------ 469 (532)
Q Consensus 414 L~v~i~~a~~L~~-----~~--~~dpyv~v~~~~---~~~kT~vv~~t~n--P~w~e~f~f~v~~~~~------------ 469 (532)
|+|.|.+|+|++. .| .+||||++.+.+ ++++|.+.+++.| |.||+.|.|++..++.
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 7899999999653 23 499999999976 3569999999999 9999999999876322
Q ss_pred ----------CCeEEEEEEEccccccCCCCCceeEEEEEechhhhccc
Q 009539 470 ----------NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNK 507 (532)
Q Consensus 470 ----------~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~ 507 (532)
...+.++|||.|. ++.|++||+++++|+.+....
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~----~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDK----FSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcc----cCCCCcceEEEEEhhhccccc
Confidence 2479999999986 789999999999999987754
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1 | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.8e-10 Score=90.36 Aligned_cols=85 Identities=19% Similarity=0.367 Sum_probs=73.1
Q ss_pred HHHHHhhch-hHH-HHHHHHHHHHHHHHHHh-cCCCceeeeEEEeEeeCCCCCCeEeeEEEEecCC-ceEEEEeeeeEeC
Q 009539 75 NKFLELMWP-YLD-KAICKTAKNIAKPIIAE-QIPKYKIESVEFETLTLGTLPPTFQGMKVYVTDE-KELIMEPCLKWAA 150 (532)
Q Consensus 75 N~~l~~~Wp-~~~-~~~~~~i~~~~~~~l~~-~~p~~~i~~~~~~~~~lG~~~p~i~~v~~~~~~~-~~~~ld~~~~~~~ 150 (532)
|.++.|++- +.+ +.+.+.+++.++..|++ .+|+| +++|++++++||+.||.|+++|+.+.++ +++.+|+|+.|.|
T Consensus 1 N~ll~R~f~~~~~t~~~~~~i~~~L~~kL~~i~~P~f-l~~i~v~~~~lG~~~P~i~~~~~~~~~~~g~~~~~~dv~Y~G 79 (91)
T PF10296_consen 1 NALLGRLFFDFRRTEAFRDKIKEKLQKKLNKIKLPSF-LDEISVTELDLGDSPPIISNVRIPDLDPDGELWIEFDVSYSG 79 (91)
T ss_pred ChHHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCCc-cCcEEEEEEECCCCCCEEEeccccccCCCCCEEEEEEEEEcC
Confidence 667777554 443 78899999999999998 68998 9999999999999999999999987544 4599999999999
Q ss_pred CCceEEEEEE
Q 009539 151 NPNVTIGVKA 160 (532)
Q Consensus 151 ~~~i~l~~~~ 160 (532)
+..+.++.++
T Consensus 80 ~~~l~l~t~l 89 (91)
T PF10296_consen 80 GFSLTLETKL 89 (91)
T ss_pred CeEEEEEEEE
Confidence 9999888764
|
These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria []. |
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=99.09 E-value=1e-09 Score=89.81 Aligned_cols=89 Identities=29% Similarity=0.562 Sum_probs=76.8
Q ss_pred EEEEEeeeecCCCC---CCCCCEEEEEEcCe---eEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCC
Q 009539 414 LVVIVHEAQDVEGK---HHTNPYARILFRGE---ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 487 (532)
Q Consensus 414 L~v~i~~a~~L~~~---~~~dpyv~v~~~~~---~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~ 487 (532)
+.+.|++|++|... +..+|||++++.+. ..+|+++.++.||.|||.|.|.+.... ...|.++|||++. .
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~-~~~l~i~v~~~~~----~ 76 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPE-LAELEIEVYDKDR----F 76 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcc-cCEEEEEEEecCC----c
Confidence 67899999999874 36899999999875 689999999999999999999998753 6789999999985 3
Q ss_pred CCCceeEEEEEechhhhccc
Q 009539 488 HPKETLGYIDINLSDVVSNK 507 (532)
Q Consensus 488 ~~d~~lG~~~i~L~~l~~~~ 507 (532)
+.+..+|.+.+++.++..+.
T Consensus 77 ~~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 77 GRDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred cCCceeEEEEEEHHHcccCc
Confidence 46899999999999987654
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.2e-09 Score=112.83 Aligned_cols=148 Identities=24% Similarity=0.321 Sum_probs=106.7
Q ss_pred ccceeeeCCcccccC--CCCCccCCCCeEEEEEEEEEcCCCCc---C---CCCCCCCcEEEEEEeCCc--CCceeeEeeC
Q 009539 228 VANMYLWPKTLEVPI--LDPSKAYRRPVGILHVKVVKAMNLKK---K---DLLGASDPYVKLKITEDK--LPSKKTTVKH 297 (532)
Q Consensus 228 ~~~~~v~P~~~~~~l--~~~~~~~~~~~g~L~V~v~~A~~L~~---~---d~~g~~dpyv~v~~~~~~--~~~~~T~v~~ 297 (532)
-+++++.|..|..+- .++.... .....|+|+|++|.+|+- . +.....||||++.+.|-. ...++|++++
T Consensus 404 ~cGYVLKP~~Lr~~~~~f~p~~~~-p~~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~ 482 (567)
T PLN02228 404 GCGYVKKPRILLDEHTLFDPCKRL-PIKTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAV 482 (567)
T ss_pred CCCceeCchhhcccccccCCccCC-CcCceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccC
Confidence 468888998776431 1222111 124579999999998731 1 112347999999997632 2346899999
Q ss_pred CCCCcee-ecEEEEEeeCCCCCEEEEEEEEccCCCCCCeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCc-cccE
Q 009539 298 KNLNPEW-NEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEK-SRGQ 375 (532)
Q Consensus 298 ~t~nP~W-ne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~-~~G~ 375 (532)
++.||+| ||+|.|.+..++-..|+|.|+|+|..+.|+++|++.+|+..|..|-. .++|... .+.. ...+
T Consensus 483 n~~nP~W~~e~f~F~~~~pELA~lRf~V~D~d~~~~d~figq~~lPv~~Lr~GYR---~VpL~~~------~G~~l~~at 553 (567)
T PLN02228 483 DQWFPIWGNDEFLFQLRVPELALLWFKVQDYDNDTQNDFAGQTCLPLPELKSGVR---AVRLHDR------AGKAYKNTR 553 (567)
T ss_pred CCCCceECCCeEEEEEEcCceeEEEEEEEeCCCCCCCCEEEEEEcchhHhhCCee---EEEccCC------CCCCCCCeE
Confidence 9999999 99999999888778999999999988889999999999999988743 2344221 1222 3457
Q ss_pred EEEEEEEEEc
Q 009539 376 LVVEFIYKPF 385 (532)
Q Consensus 376 l~l~l~~~p~ 385 (532)
|.+.+.+.+.
T Consensus 554 Lfv~~~~~~~ 563 (567)
T PLN02228 554 LLVSFALDPP 563 (567)
T ss_pred EEEEEEEcCc
Confidence 8888888764
|
|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.8e-09 Score=112.96 Aligned_cols=152 Identities=23% Similarity=0.350 Sum_probs=113.7
Q ss_pred ccceeeeCCcccccCCCCCcc---CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc---CCceeeEeeCCCCC
Q 009539 228 VANMYLWPKTLEVPILDPSKA---YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK---LPSKKTTVKHKNLN 301 (532)
Q Consensus 228 ~~~~~v~P~~~~~~l~~~~~~---~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~---~~~~~T~v~~~t~n 301 (532)
-+++++.|..|.-+-+|+... ...-.-.|.|.|+.|++|+... .|...|||++.+.|.. ...++|.+..|++|
T Consensus 1036 rcGYvLqPs~Mrte~fdP~n~e~~~~l~p~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGln 1114 (1267)
T KOG1264|consen 1036 RCGYVLQPSSMRTEKFDPMNPESQRGLLPMTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLN 1114 (1267)
T ss_pred ceeeEecchhcccccCCCCChHHhccccceEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCC
Confidence 578899999988777665442 1222346899999999999554 3667899999997643 22356777889999
Q ss_pred ceee-cEEEEEeeCCCCCEEEEEEEEccCCCCCCeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEE
Q 009539 302 PEWN-EEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEF 380 (532)
Q Consensus 302 P~Wn-e~f~f~v~~~~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l 380 (532)
|+|| |+|+|.+.+|+-..|++.|||.|.++...|||++.+|+..+..+-. ..+|.... ...-....|.+.+
T Consensus 1115 PiWn~e~ftFeI~nPe~A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~GfR---sVpLkN~y-----SEdlELaSLLv~i 1186 (1267)
T KOG1264|consen 1115 PIWNPEKFTFEIYNPEFAFLRFVVYEEDMFSDPNFLAQATYPVKAIKSGFR---SVPLKNGY-----SEDLELASLLVFI 1186 (1267)
T ss_pred CCCCCcceEEEeeCCceEEEEEEEecccccCCcceeeeeecchhhhhccce---eeecccCc-----hhhhhhhhheeee
Confidence 9999 9999999999989999999999999988999999999999987631 12221110 0122455677788
Q ss_pred EEEEccCC
Q 009539 381 IYKPFKEE 388 (532)
Q Consensus 381 ~~~p~~~~ 388 (532)
...|..+.
T Consensus 1187 ~m~~~~~~ 1194 (1267)
T KOG1264|consen 1187 EMRPVLES 1194 (1267)
T ss_pred EeccccCc
Confidence 88876554
|
|
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.6e-09 Score=112.38 Aligned_cols=113 Identities=23% Similarity=0.298 Sum_probs=98.4
Q ss_pred EEEEEEeeeecCCCC---CCCCCEEEEEEcCee-EEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCC
Q 009539 413 LLVVIVHEAQDVEGK---HHTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLH 488 (532)
Q Consensus 413 ~L~v~i~~a~~L~~~---~~~dpyv~v~~~~~~-~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~ 488 (532)
-|.|.|.+|+||+.. |..||||.|.+.... .+|.++.+++.|-|.|.|.|.++.. -..+.+-|||+| ++
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~--F~~l~fYv~D~d-----~~ 78 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRT--FRYLSFYVWDRD-----LK 78 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcc--eeeEEEEEeccc-----cc
Confidence 478999999999974 689999999998876 4999999999999999999999753 357999999997 57
Q ss_pred CCceeEEEEEechhhhccceeceEEEeCCC-----CCeEEEEEEEEEeC
Q 009539 489 PKETLGYIDINLSDVVSNKRINEKYHLIDS-----KNGRIQIELQWRTA 532 (532)
Q Consensus 489 ~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~-----~~G~i~l~~~w~p~ 532 (532)
+|+.||.+.|.=.++......+.||.|... -+|+|++++++.++
T Consensus 79 ~D~~IGKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~ 127 (800)
T KOG2059|consen 79 RDDIIGKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEA 127 (800)
T ss_pred cccccceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEeccc
Confidence 999999999999999887788999999643 27999999998653
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.9e-10 Score=117.52 Aligned_cols=132 Identities=27% Similarity=0.503 Sum_probs=104.5
Q ss_pred cCCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc-------------------------C---CceeeEeeCCC
Q 009539 248 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK-------------------------L---PSKKTTVKHKN 299 (532)
Q Consensus 248 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~-------------------------~---~~~~T~v~~~t 299 (532)
....|.-.+.|.+.+|+||.++|.+|-||||+...+.+.. . ..+-|++++.|
T Consensus 108 ~~k~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~T 187 (1103)
T KOG1328|consen 108 QNKPPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKT 187 (1103)
T ss_pred CCCCCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhccccccc
Confidence 4455667788999999999999999999999999873210 0 02368899999
Q ss_pred CCceeecEEEEEeeCCCCCEEEEEEEEccCC---------------------------------C---CCCeeEEEEEeC
Q 009539 300 LNPEWNEEYNFTVRDPESQAVELAVYDWEQV---------------------------------G---KHDKMGMNVVPL 343 (532)
Q Consensus 300 ~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~---------------------------------~---~d~~iG~~~i~l 343 (532)
+||+|+|.|.|.+.+..++.+.+.+||+|.- + .|||+|.+.+|+
T Consensus 188 LnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl 267 (1103)
T KOG1328|consen 188 LNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPL 267 (1103)
T ss_pred CCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccch
Confidence 9999999999999998899999999998732 2 289999999999
Q ss_pred ccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEEc
Q 009539 344 KELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF 385 (532)
Q Consensus 344 ~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 385 (532)
.++... +.+.|+.|-+.. ..++..|.+++.+...-.
T Consensus 268 ~EiP~~-Gld~WFkLepRS-----~~S~VqG~~~LklwLsT~ 303 (1103)
T KOG1328|consen 268 AEIPPD-GLDQWFKLEPRS-----DKSKVQGQVKLKLWLSTK 303 (1103)
T ss_pred hcCCcc-hHHHHhccCccc-----ccccccceEEEEEEEeee
Confidence 999865 455666664322 236789999999977654
|
|
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.2e-08 Score=103.80 Aligned_cols=112 Identities=21% Similarity=0.274 Sum_probs=87.4
Q ss_pred CceEEEEEEeeeecCCC--------CCCCCCEEEEEEcCe-----eEEEeeecCCCCCcccceEEEEecCCCCCCeEEEE
Q 009539 410 GGGLLVVIVHEAQDVEG--------KHHTNPYARILFRGE-----ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVE 476 (532)
Q Consensus 410 ~~g~L~v~i~~a~~L~~--------~~~~dpyv~v~~~~~-----~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~ 476 (532)
....|.|+|+.|++++. ...+||||+|.+.|- .++|.+..++.||+|||+|+|.+..+ .-..+.++
T Consensus 407 ~~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~P-ELAlLrf~ 485 (537)
T PLN02223 407 VVKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYP-DLALISFE 485 (537)
T ss_pred cceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEcc-CceEEEEE
Confidence 35689999999998741 135799999999662 45787777899999999999999886 34579999
Q ss_pred EEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCC-----CeEEEEEEEE
Q 009539 477 VCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK-----NGRIQIELQW 529 (532)
Q Consensus 477 V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~w 529 (532)
|+|+|. .+.++++|+..+|++.+..+- +..+|.+.. .-++.++++|
T Consensus 486 V~D~D~----~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 486 VYDYEV----STADAFCGQTCLPVSELIEGI---RAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred EEecCC----CCCCcEEEEEecchHHhcCCc---eeEeccCCCcCCCCCceEEEEEEe
Confidence 999985 357899999999999987643 566776542 3567777776
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.5e-09 Score=85.23 Aligned_cols=86 Identities=21% Similarity=0.416 Sum_probs=71.3
Q ss_pred EEEEEEEcCCCCcCC---CCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCC
Q 009539 256 LHVKVVKAMNLKKKD---LLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGK 332 (532)
Q Consensus 256 L~V~v~~A~~L~~~d---~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~ 332 (532)
|.|+|..|+|+...+ ..+.+||||.+.+++.. +.||++ +.||.|||+|.|.+. ....+.+.|||.. ...
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~--kaRTr~---srnd~WnE~F~i~Vd--k~nEiel~VyDk~-~~~ 72 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVE--RARTKP---SRNDRWNEDFEIPVE--KNNEEEVIVYDKG-GDQ 72 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEE--EEeccC---CCCCcccceEEEEec--CCcEEEEEEEeCC-CCe
Confidence 679999999999887 56889999999999764 247765 589999999999994 3689999999985 345
Q ss_pred CCeeEEEEEeCccCCCC
Q 009539 333 HDKMGMNVVPLKELTPE 349 (532)
Q Consensus 333 d~~iG~~~i~l~~l~~~ 349 (532)
.-.+|...+.++++.+.
T Consensus 73 ~~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 73 PVPVGLLWLRLSDIAEE 89 (109)
T ss_pred ecceeeehhhHHHHHHH
Confidence 66899999999888653
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.4e-08 Score=100.06 Aligned_cols=178 Identities=20% Similarity=0.332 Sum_probs=128.0
Q ss_pred eeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccC----CCCCCeeEEEEEeCccCCCCCCeEEEEecccccccCC
Q 009539 291 KKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQ----VGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLND 366 (532)
Q Consensus 291 ~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~----~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~ 366 (532)
.+|.++.+.+||.|-+.|.+.......|.++++++|-+. ...++++|++...+.++.........+.+.+
T Consensus 43 ~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~------ 116 (529)
T KOG1327|consen 43 GRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKP------ 116 (529)
T ss_pred cceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhccc------
Confidence 489999999999999999888776678999999999774 3567899999999999876543322222211
Q ss_pred CCCCccccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEc--C-
Q 009539 367 GQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR--G- 440 (532)
Q Consensus 367 ~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~--~- 440 (532)
......|+|.+.+.-.. ..........+|++|..+ +++|||..++-. .
T Consensus 117 -~~~~~~g~iti~aee~~-------------------------~~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~ 170 (529)
T KOG1327|consen 117 -GKNAGSGTITISAEEDE-------------------------SDNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDG 170 (529)
T ss_pred -CccCCcccEEEEeeccc-------------------------ccCceeeeeeeeeecCcccccccCCcceEEEEecCCC
Confidence 02346677777663221 011222334568888765 689999998753 2
Q ss_pred e---eEEEeeecCCCCCcccceEEEEecCCCC---CCeEEEEEEEccccccCCCCCceeEEEEEechhhhc
Q 009539 441 E---ERKTKHVKKNRDPRWEEEFQFMLEEPPT---NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVS 505 (532)
Q Consensus 441 ~---~~kT~vv~~t~nP~w~e~f~f~v~~~~~---~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~ 505 (532)
. .++|.+++++.+|.|.+ |.......+. +..+.+.+||++.+ +.++++|++..++.++..
T Consensus 171 s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~----~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 171 STQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSN----GKHDLIGKFQTTLSELQE 236 (529)
T ss_pred ceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCC----CCcCceeEecccHHHhcc
Confidence 2 24999999999999998 6665554332 35789999999864 567999999999999864
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.4e-09 Score=112.61 Aligned_cols=100 Identities=26% Similarity=0.447 Sum_probs=87.1
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc----CCceeeEeeCCCCCceeecEEEEEeeCCC----CCEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK----LPSKKTTVKHKNLNPEWNEEYNFTVRDPE----SQAV 320 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~----~~~~~T~v~~~t~nP~Wne~f~f~v~~~~----~~~L 320 (532)
+..+...|.|.|+.|+++.+.|.+|.|||||++.+.+.. ....+|+|+.+|+||+|+|+|+|.|.... ...+
T Consensus 942 y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~ 1021 (1103)
T KOG1328|consen 942 YNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAML 1021 (1103)
T ss_pred eeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceE
Confidence 455667888999999999999999999999999998754 34569999999999999999999997432 4579
Q ss_pred EEEEEEccCCCCCCeeEEEEEeCccCCC
Q 009539 321 ELAVYDWEQVGKHDKMGMNVVPLKELTP 348 (532)
Q Consensus 321 ~v~v~d~d~~~~d~~iG~~~i~l~~l~~ 348 (532)
.|+|+|+|-.+.+||-|++.+.|.++..
T Consensus 1022 ~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1022 HFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred EEEeeccceecccccchHHHHhhCCCCC
Confidence 9999999999999999999999988864
|
|
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.8e-08 Score=101.20 Aligned_cols=111 Identities=24% Similarity=0.314 Sum_probs=86.4
Q ss_pred ceEEEEEEeeeecCCC--C-------CCCCCEEEEEEcC-----eeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEE
Q 009539 411 GGLLVVIVHEAQDVEG--K-------HHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVE 476 (532)
Q Consensus 411 ~g~L~v~i~~a~~L~~--~-------~~~dpyv~v~~~~-----~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~ 476 (532)
...|.|+|+.|++++. . ...||||+|.+-| .+++|+++.++.||+|||+|+|.+..+ .-..+.|+
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~P-ELAllrf~ 547 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVP-ELALLRIE 547 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcC-CccEEEEE
Confidence 4689999999988742 1 1359999999865 356999999999999999999999875 34579999
Q ss_pred EEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCC-----CeEEEEEEEE
Q 009539 477 VCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK-----NGRIQIELQW 529 (532)
Q Consensus 477 V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~w 529 (532)
|+|+|. .+.++++|+..++++.+..+- ++.+|.+.. .-.+.+++.|
T Consensus 548 V~D~D~----~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~G~~l~~a~Llv~f~~ 598 (599)
T PLN02952 548 VREYDM----SEKDDFGGQTCLPVSELRPGI---RSVPLHDKKGEKLKNVRLLMRFIF 598 (599)
T ss_pred EEecCC----CCCCCeEEEEEcchhHhcCCc---eeEeCcCCCCCCCCCEEEEEEEEe
Confidence 999875 457899999999999987654 588886542 3445555554
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.7e-08 Score=78.79 Aligned_cols=81 Identities=26% Similarity=0.479 Sum_probs=68.2
Q ss_pred EEEEEeeeecCCC------CCCCCCEEEEEEcCe-eEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccC
Q 009539 414 LVVIVHEAQDVEG------KHHTNPYARILFRGE-ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGL 486 (532)
Q Consensus 414 L~v~i~~a~~L~~------~~~~dpyv~v~~~~~-~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~ 486 (532)
|.|+|+.|+|+.. .+.++|||.+++++. +.||++ +.||.|||.|+|.+.. ...+.+.|||+..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk---~nEiel~VyDk~~---- 70 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEK---NNEEEVIVYDKGG---- 70 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecC---CcEEEEEEEeCCC----
Confidence 5789999999964 357899999999987 568886 5899999999999953 4689999999964
Q ss_pred CCCCceeEEEEEechhhhc
Q 009539 487 LHPKETLGYIDINLSDVVS 505 (532)
Q Consensus 487 ~~~d~~lG~~~i~L~~l~~ 505 (532)
+..-.+|-.=+.++++.+
T Consensus 71 -~~~~Pi~llW~~~sdi~E 88 (109)
T cd08689 71 -DQPVPVGLLWLRLSDIAE 88 (109)
T ss_pred -CeecceeeehhhHHHHHH
Confidence 345689999999999986
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.4e-07 Score=101.60 Aligned_cols=121 Identities=17% Similarity=0.293 Sum_probs=92.5
Q ss_pred CeEEEEEEEEEcCCCCcC----CCC-CCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEE
Q 009539 252 PVGILHVKVVKAMNLKKK----DLL-GASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYD 326 (532)
Q Consensus 252 ~~g~L~V~v~~A~~L~~~----d~~-g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d 326 (532)
--|.|.++|.+|+-+... +.. ...||||.+.+++.++ .|| .+..||+|||+|.+.+.......+.|.|.|
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v--~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~ 82 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKV--AKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT 82 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEE--ecC---CCCCCCccccceeEEeeeecCCcEEEEEec
Confidence 358999999999843321 111 1239999999997664 477 566699999999999988754689999988
Q ss_pred ccCCCCCCeeEEEEEeCccCCCCCC-eEEEEecccccccCCCCCCccc-cEEEEEEEEEEccCC
Q 009539 327 WEQVGKHDKMGMNVVPLKELTPEEP-SVKTLDLLKNMDLNDGQNEKSR-GQLVVEFIYKPFKEE 388 (532)
Q Consensus 327 ~d~~~~d~~iG~~~i~l~~l~~~~~-~~~~l~l~~~~~~~~~~~~~~~-G~l~l~l~~~p~~~~ 388 (532)
...+||.+.+|++++..+.. .+.|+++.... ++... .+|+++++|.|...+
T Consensus 83 -----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~------~~p~~~~~~~~~~~~~~~~~~ 135 (758)
T PLN02352 83 -----KCSILGRFHIQAHQIVTEASFINGFFPLIMEN------GKPNPELKLRFMLWFRPAELE 135 (758)
T ss_pred -----CCeEEEEEEEEHHHhhCCCcccceEEEcccCC------CCCCCCCEEEEEEEEEEhhhC
Confidence 26799999999999998865 88899986531 11223 599999999998665
|
|
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.7e-07 Score=97.73 Aligned_cols=112 Identities=22% Similarity=0.243 Sum_probs=86.8
Q ss_pred CceEEEEEEeeeecCCC--C-------CCCCCEEEEEEcC-----eeEEEeeecCCCCCcccceEEEEecCCCCCCeEEE
Q 009539 410 GGGLLVVIVHEAQDVEG--K-------HHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHV 475 (532)
Q Consensus 410 ~~g~L~v~i~~a~~L~~--~-------~~~dpyv~v~~~~-----~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v 475 (532)
....|.|+|+.+++++. . ...||||+|.+-| .+++|++..++.||+|||+|+|.+..+ .-..+.+
T Consensus 467 ~~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vP-ELAllRf 545 (598)
T PLN02230 467 PKKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVP-ELALLRV 545 (598)
T ss_pred cCcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcC-ceeEEEE
Confidence 34689999999998642 1 2479999999865 235899888999999999999999876 3458999
Q ss_pred EEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCC-----CeEEEEEEEE
Q 009539 476 EVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK-----NGRIQIELQW 529 (532)
Q Consensus 476 ~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~w 529 (532)
+|+|++. .+.|+++|+..+++..|..+- +..+|.+.. .-.+.++++|
T Consensus 546 ~V~d~d~----~~~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 546 EVHEHDI----NEKDDFGGQTCLPVSEIRQGI---HAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EEEECCC----CCCCCEEEEEEcchHHhhCcc---ceEeccCCCcCCCCCCeeEEEEEe
Confidence 9999975 357999999999999987643 355665542 3566777766
|
|
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.2e-08 Score=106.74 Aligned_cols=117 Identities=26% Similarity=0.342 Sum_probs=96.0
Q ss_pred CccccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCC---CCCCCCEEEEEEcCe-----
Q 009539 370 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEG---KHHTNPYARILFRGE----- 441 (532)
Q Consensus 370 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~---~~~~dpyv~v~~~~~----- 441 (532)
++..|++.++++|. .|.|+|.|.-|++|+- ...+||||+.|+...
T Consensus 1509 ~~iggqV~LsIsY~---------------------------~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~s 1561 (1639)
T KOG0905|consen 1509 GEIGGQVKLSISYN---------------------------NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTS 1561 (1639)
T ss_pred cccCceEEEEEEEc---------------------------CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhh
Confidence 55677999999996 6899999999999953 458999999999643
Q ss_pred eEEEeeecCCCCCcccceEEEEec-CCC-CCCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCC
Q 009539 442 ERKTKHVKKNRDPRWEEEFQFMLE-EPP-TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLID 517 (532)
Q Consensus 442 ~~kT~vv~~t~nP~w~e~f~f~v~-~~~-~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~ 517 (532)
++||+++++|.||.|||...+.-. ... ....|.+.||..+. +..+.++|.+.|+|.++...++..+||+|..
T Consensus 1562 KRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~----~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1562 KRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGG----LLENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred hhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecccc----eeeeeeeeeeecchhhcchhhhhcceeeccc
Confidence 469999999999999999888722 111 22479999999875 5678999999999999988777779999964
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=98.65 E-value=4e-07 Score=96.29 Aligned_cols=111 Identities=20% Similarity=0.278 Sum_probs=85.8
Q ss_pred ceEEEEEEeeeecCC----C-----CCCCCCEEEEEEcC-----eeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEE
Q 009539 411 GGLLVVIVHEAQDVE----G-----KHHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVE 476 (532)
Q Consensus 411 ~g~L~v~i~~a~~L~----~-----~~~~dpyv~v~~~~-----~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~ 476 (532)
...|.|+|+.|++++ . ....||||+|.+-| .+++|+++.++.||+|||.|+|.+..+ .-..+.+.
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~P-eLAllRf~ 529 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVP-ELALLRLE 529 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcC-ceeEEEEE
Confidence 467999999998743 1 12579999999954 346999999999999999999999875 34589999
Q ss_pred EEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCC-----CeEEEEEEEE
Q 009539 477 VCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK-----NGRIQIELQW 529 (532)
Q Consensus 477 V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~w 529 (532)
|+|+|. .+.++++|+..++++.|..+- +..+|.+.. ...+.++++|
T Consensus 530 V~d~D~----~~~ddfigq~~lPv~~Lr~Gy---R~V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 530 VHEYDM----SEKDDFGGQTCLPVWELSQGI---RAFPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred EEECCC----CCCCcEEEEEEcchhhhhCcc---ceEEccCCCcCCCCCeeEEEEEEe
Confidence 999875 457899999999999986643 455665432 3566677766
|
|
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.4e-08 Score=97.28 Aligned_cols=114 Identities=18% Similarity=0.400 Sum_probs=95.1
Q ss_pred ceEEEEEEeeeecCCCC----CCCCCEEEEEEcCeeEEEeeecCCCCCccc-ceEEEEecCCCCC-CeEEEEEEEccccc
Q 009539 411 GGLLVVIVHEAQDVEGK----HHTNPYARILFRGEERKTKHVKKNRDPRWE-EEFQFMLEEPPTN-DRLHVEVCSVSSRI 484 (532)
Q Consensus 411 ~g~L~v~i~~a~~L~~~----~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~-e~f~f~v~~~~~~-~~l~v~V~d~~~~~ 484 (532)
.|.+.|.|..||+||.. ...|.||++++.+.++||.|..+++||.|| +-|.|.+.+.... +.+.|+++|+|.
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt-- 79 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT-- 79 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc--
Confidence 47889999999999864 468999999999999999999999999999 4599999876443 489999999997
Q ss_pred cCCCCCceeEEEEEechhhhcc----------ceeceEEEeCCC---CCeEEEEEEE
Q 009539 485 GLLHPKETLGYIDINLSDVVSN----------KRINEKYHLIDS---KNGRIQIELQ 528 (532)
Q Consensus 485 ~~~~~d~~lG~~~i~L~~l~~~----------~~~~~~~~L~~~---~~G~i~l~~~ 528 (532)
.+.++.||.+.|+++.+.-. .-+..||+..+. -+|+|.+-++
T Consensus 80 --ysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivk 134 (1169)
T KOG1031|consen 80 --YSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVK 134 (1169)
T ss_pred --cccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEE
Confidence 47899999999999988642 236789998765 3688876543
|
|
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.7e-08 Score=98.51 Aligned_cols=120 Identities=26% Similarity=0.419 Sum_probs=97.3
Q ss_pred EEEEEEEEEcCCCCcCCCC-CCCCcEEEEEEeCCcCCceeeEeeCCCCCceee-cEEEEEeeCC--CCCEEEEEEEEccC
Q 009539 254 GILHVKVVKAMNLKKKDLL-GASDPYVKLKITEDKLPSKKTTVKHKNLNPEWN-EEYNFTVRDP--ESQAVELAVYDWEQ 329 (532)
Q Consensus 254 g~L~V~v~~A~~L~~~d~~-g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wn-e~f~f~v~~~--~~~~L~v~v~d~d~ 329 (532)
|.|.|+|..|++|+-+|.. ...|.||++.+..... +|.+..+++||.|| +.|.|.|.+. .+..|.+++.|+|.
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~---ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt 79 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTF---KTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT 79 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccce---ehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc
Confidence 6789999999999999865 3569999999987654 89999999999999 6789998754 36789999999999
Q ss_pred CCCCCeeEEEEEeCccCCCCC----------CeEEEEecccccccCCCCCCccccEEEEEEEEE
Q 009539 330 VGKHDKMGMNVVPLKELTPEE----------PSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 383 (532)
Q Consensus 330 ~~~d~~iG~~~i~l~~l~~~~----------~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~ 383 (532)
.+.+|-||.+.|++..|.-.+ ....|++++.. -...+|+|.+-+...
T Consensus 80 ysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdt-------ihgirgeinvivkvd 136 (1169)
T KOG1031|consen 80 YSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDT-------IHGIRGEINVIVKVD 136 (1169)
T ss_pred cccccccceeeeccChHHHHhHHhhhcCCceEEeeeeeccee-------cccccceeEEEEEEe
Confidence 999999999999999876332 23467877542 245788888777543
|
|
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=98.52 E-value=8.8e-07 Score=95.66 Aligned_cols=109 Identities=21% Similarity=0.359 Sum_probs=86.0
Q ss_pred ceEEEEEEeeeecCCCC--------CCCCCEEEEEEcCeeE-EEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcc
Q 009539 411 GGLLVVIVHEAQDVEGK--------HHTNPYARILFRGEER-KTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVS 481 (532)
Q Consensus 411 ~g~L~v~i~~a~~L~~~--------~~~dpyv~v~~~~~~~-kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~ 481 (532)
-|.|.++|.+|+.+... ...+|||.|.+++.+. || .+..||+|+|.|..+|... .+..+.+.|.|.
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~-~~~~~~f~vk~~- 83 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHP-LDSTITITLKTK- 83 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeee-cCCcEEEEEecC-
Confidence 46777777777633210 1239999999998776 88 6677999999999999875 334799999883
Q ss_pred ccccCCCCCceeEEEEEechhhhccce-eceEEEeCCCC-----CeEEEEEEEEEeC
Q 009539 482 SRIGLLHPKETLGYIDINLSDVVSNKR-INEKYHLIDSK-----NGRIQIELQWRTA 532 (532)
Q Consensus 482 ~~~~~~~~d~~lG~~~i~L~~l~~~~~-~~~~~~L~~~~-----~G~i~l~~~w~p~ 532 (532)
-.+||.+.++..+++.++. ++.||++.+.. ..+|+++++|.|+
T Consensus 84 --------~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 132 (758)
T PLN02352 84 --------CSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPA 132 (758)
T ss_pred --------CeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEh
Confidence 3799999999999999865 99999997643 2599999999985
|
|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.5e-06 Score=91.72 Aligned_cols=113 Identities=19% Similarity=0.239 Sum_probs=87.4
Q ss_pred ceEEEEEEeeeecCCC----C-----CCCCCEEEEEEcC-----eeEEEeeecCCCCCcc-cceEEEEecCCCCCCeEEE
Q 009539 411 GGLLVVIVHEAQDVEG----K-----HHTNPYARILFRG-----EERKTKHVKKNRDPRW-EEEFQFMLEEPPTNDRLHV 475 (532)
Q Consensus 411 ~g~L~v~i~~a~~L~~----~-----~~~dpyv~v~~~~-----~~~kT~vv~~t~nP~w-~e~f~f~v~~~~~~~~l~v 475 (532)
...|+|+|++|++|+. . ...||||+|.+.| .+++|+++.++.||+| ||.|+|.+..+ .-..+.+
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~p-ELA~lRf 508 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVP-ELALLWF 508 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcC-ceeEEEE
Confidence 4579999999998731 1 2479999999854 2459999988899999 99999999876 3458999
Q ss_pred EEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCC-----CeEEEEEEEEEe
Q 009539 476 EVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK-----NGRIQIELQWRT 531 (532)
Q Consensus 476 ~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~w~p 531 (532)
.|+|++. .+.|+++|+..++++.|..+- +..+|.+.. ...+.+++.+.|
T Consensus 509 ~V~D~d~----~~~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 509 KVQDYDN----DTQNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAYKNTRLLVSFALDP 562 (567)
T ss_pred EEEeCCC----CCCCCEEEEEEcchhHhhCCe---eEEEccCCCCCCCCCeEEEEEEEEcC
Confidence 9999875 467899999999999986542 456775542 466777777654
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.3e-06 Score=92.76 Aligned_cols=111 Identities=20% Similarity=0.325 Sum_probs=86.6
Q ss_pred EEEEEEeeeecCCCC-------CCCCCEEEEEEcCe-----eEEEeee-cCCCCCcccceEEEEecCCCCCCeEEEEEEE
Q 009539 413 LLVVIVHEAQDVEGK-------HHTNPYARILFRGE-----ERKTKHV-KKNRDPRWEEEFQFMLEEPPTNDRLHVEVCS 479 (532)
Q Consensus 413 ~L~v~i~~a~~L~~~-------~~~dpyv~v~~~~~-----~~kT~vv-~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d 479 (532)
.|.|.|+.+++++.. ..+||||.|.+.|- ..+|+++ .++-||.|+|+|+|.+..+ .-.-|.+.|+|
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vP-ELAliRF~V~d 695 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVP-ELALIRFEVHD 695 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEecc-ceeEEEEEEEe
Confidence 899999999976531 35899999998764 3499955 5788999999999999987 34589999999
Q ss_pred ccccccCCCCCceeEEEEEechhhhccceeceEEEeCCC-----CCeEEEEEEEEEe
Q 009539 480 VSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS-----KNGRIQIELQWRT 531 (532)
Q Consensus 480 ~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~-----~~G~i~l~~~w~p 531 (532)
++. .++|+++|+..+|++.|..+= +-.+|.+. ..-.+-+++.|.+
T Consensus 696 ~d~----~~~ddF~GQ~tlP~~~L~~Gy---RhVpL~~~~G~~~~~asLfv~i~~~~ 745 (746)
T KOG0169|consen 696 YDY----IGKDDFIGQTTLPVSELRQGY---RHVPLLSREGEALSSASLFVRIAIVE 745 (746)
T ss_pred cCC----CCcccccceeeccHHHhhCce---eeeeecCCCCccccceeEEEEEEEec
Confidence 986 467999999999999986642 45566543 2467777777754
|
|
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.7e-07 Score=92.61 Aligned_cols=172 Identities=22% Similarity=0.299 Sum_probs=111.0
Q ss_pred EEeEEEecCCCCCCCeeeEEEEEccCCceEEEEEEEccc---cccCCchhhhhhhccceeeeCCcccccCCC-CCc----
Q 009539 176 AQPRITLKPLVPAFPCFANIYVSLMEKPHVDFGLKLVGA---DLMSIPGLYRFVQVANMYLWPKTLEVPILD-PSK---- 247 (532)
Q Consensus 176 g~~rv~l~pl~~~~P~~~~v~~sf~~~P~id~~~~~~g~---~~~~~P~l~~~i~~~~~~v~P~~~~~~l~~-~~~---- 247 (532)
|+..++..-+.|.|-..-.+.+.|.+...+.|.+..+.. ++.+...+.+.....++++.-..+..++.- ...
T Consensus 43 ~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~~~~~~~ 122 (529)
T KOG1327|consen 43 GRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKPGKNAGS 122 (529)
T ss_pred cceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhcccCccCCc
Confidence 455555666778888888889999999999999876532 222222222222222222222222222210 000
Q ss_pred -------cCCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEe---CCcCCceeeEeeCCCCCceeecEEEEEeeCCC-
Q 009539 248 -------AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKIT---EDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE- 316 (532)
Q Consensus 248 -------~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~---~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~- 316 (532)
...........-..+|++|.++|.++++|||..++-. +.....++|.+.++++||.|.+ |.+......
T Consensus 123 g~iti~aee~~~~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~ 201 (529)
T KOG1327|consen 123 GTITISAEEDESDNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCS 201 (529)
T ss_pred ccEEEEeecccccCceeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcc
Confidence 0011111112223558899999999999999999764 2334457999999999999984 555544322
Q ss_pred ---CCEEEEEEEEccCCCCCCeeEEEEEeCccCCC
Q 009539 317 ---SQAVELAVYDWEQVGKHDKMGMNVVPLKELTP 348 (532)
Q Consensus 317 ---~~~L~v~v~d~d~~~~d~~iG~~~i~l~~l~~ 348 (532)
...+.+.+||++..++++++|++..++.++..
T Consensus 202 ~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 202 KDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred cCCCCceEEEEeccCCCCCcCceeEecccHHHhcc
Confidence 46789999999999999999999999999975
|
|
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.6e-07 Score=74.04 Aligned_cols=102 Identities=22% Similarity=0.319 Sum_probs=77.0
Q ss_pred EEEEEeeeecCCCC----------------CCCCCEEEEEE----cCeeEEEeeecCCCCCcccceEEEEecC-------
Q 009539 414 LVVIVHEAQDVEGK----------------HHTNPYARILF----RGEERKTKHVKKNRDPRWEEEFQFMLEE------- 466 (532)
Q Consensus 414 L~v~i~~a~~L~~~----------------~~~dpyv~v~~----~~~~~kT~vv~~t~nP~w~e~f~f~v~~------- 466 (532)
|.|.|++|.+|... =.-|+||++.+ +++.++|+++.++-.|.|+..++|++.-
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 46788888888631 14689999995 3456799999999999999999999971
Q ss_pred -C------CCCCeEEEEEEEccccccC------CCCCceeEEEEEechhhhcc-ceeceEEEe
Q 009539 467 -P------PTNDRLHVEVCSVSSRIGL------LHPKETLGYIDINLSDVVSN-KRINEKYHL 515 (532)
Q Consensus 467 -~------~~~~~l~v~V~d~~~~~~~------~~~d~~lG~~~i~L~~l~~~-~~~~~~~~L 515 (532)
. -....+.++||++.....- -.+|-.||.+.||+.+|+.+ ..+..||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 1 1134799999988643110 12466899999999999984 578999985
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.4e-06 Score=88.28 Aligned_cols=98 Identities=18% Similarity=0.228 Sum_probs=78.2
Q ss_pred eEEEEEEeeeecCCCC--CCCCCEEEEEEcCe-----e-EEEeeecCCCCCccc-ceEEEEecCCCCCCeEEEEEEEccc
Q 009539 412 GLLVVIVHEAQDVEGK--HHTNPYARILFRGE-----E-RKTKHVKKNRDPRWE-EEFQFMLEEPPTNDRLHVEVCSVSS 482 (532)
Q Consensus 412 g~L~v~i~~a~~L~~~--~~~dpyv~v~~~~~-----~-~kT~vv~~t~nP~w~-e~f~f~v~~~~~~~~l~v~V~d~~~ 482 (532)
-.|.|.|+.||.|+.. +...|||+|.+-|. + ++|.|+.++.||+|| |.|+|.+.++ .-..|.+.|+|.|-
T Consensus 1065 ~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nP-e~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNP-EFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCC-ceEEEEEEEecccc
Confidence 4689999999999975 45679999998653 3 355667789999999 9999999997 44589999999974
Q ss_pred cccCCCCCceeEEEEEechhhhccceeceEEEeCC
Q 009539 483 RIGLLHPKETLGYIDINLSDVVSNKRINEKYHLID 517 (532)
Q Consensus 483 ~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~ 517 (532)
++...+||+++.|+..+..+ -+..+|.+
T Consensus 1144 ----fs~~~FiaqA~yPv~~ik~G---fRsVpLkN 1171 (1267)
T KOG1264|consen 1144 ----FSDPNFLAQATYPVKAIKSG---FRSVPLKN 1171 (1267)
T ss_pred ----cCCcceeeeeecchhhhhcc---ceeeeccc
Confidence 88889999999999887653 23445544
|
|
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.1e-07 Score=98.58 Aligned_cols=106 Identities=25% Similarity=0.268 Sum_probs=88.0
Q ss_pred eEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEE---eeCCCCCEEEEEEEEc
Q 009539 253 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFT---VRDPESQAVELAVYDW 327 (532)
Q Consensus 253 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~---v~~~~~~~L~v~v~d~ 327 (532)
.|.|.|-|..|++|+-..-...+||||+.++.+.. ..++||++.++|.||+|||...+. ........|.++||..
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence 68999999999999655545678999999997643 345799999999999999998765 2223367899999999
Q ss_pred cCCCCCCeeEEEEEeCccCCCCCCeEEEEec
Q 009539 328 EQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 358 (532)
Q Consensus 328 d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l 358 (532)
+....+.++|.+.++|.++........|+.+
T Consensus 1603 ~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~l 1633 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVDLLKESVGWYNL 1633 (1639)
T ss_pred cceeeeeeeeeeecchhhcchhhhhcceeec
Confidence 9888999999999999999877666677766
|
|
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.5e-06 Score=81.82 Aligned_cols=97 Identities=31% Similarity=0.441 Sum_probs=80.4
Q ss_pred cCCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEEE
Q 009539 248 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELA 323 (532)
Q Consensus 248 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~ 323 (532)
.+.....-|.|++++|..|..+|.+|.+||||+.++.+.. .-+++|.+.++|.||+||+.|.|.+... ....+.+.
T Consensus 227 ~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~ls 306 (362)
T KOG1013|consen 227 AYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALS 306 (362)
T ss_pred ccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEe
Confidence 4555677899999999999999999999999999997543 2346899999999999999999988643 36789999
Q ss_pred EEEccCCCCCCeeEEEEEeCc
Q 009539 324 VYDWEQVGKHDKMGMNVVPLK 344 (532)
Q Consensus 324 v~d~d~~~~d~~iG~~~i~l~ 344 (532)
|||++..+..+.+|-+....-
T Consensus 307 vgd~~~G~s~d~~GG~~~g~~ 327 (362)
T KOG1013|consen 307 VGDYDIGKSNDSIGGSMLGGY 327 (362)
T ss_pred ecccCCCcCccCCCccccccc
Confidence 999998778899888665443
|
|
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.1e-06 Score=66.15 Aligned_cols=91 Identities=19% Similarity=0.271 Sum_probs=69.6
Q ss_pred EEEEEEcCCCCcCCCCC-CCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEEEEEEccCCCCC
Q 009539 257 HVKVVKAMNLKKKDLLG-ASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYDWEQVGKH 333 (532)
Q Consensus 257 ~V~v~~A~~L~~~d~~g-~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d~d~~~~d 333 (532)
.|++++|++|.-....| .+.-|++--+.-.+....||+++.+..||+|+|+|.|.+... .+-.|-+.|+. ...+.
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK 79 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK 79 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence 58999999997654433 345577665543343346899999999999999999987643 35578888888 56788
Q ss_pred CeeEEEEEeCccCCCC
Q 009539 334 DKMGMNVVPLKELTPE 349 (532)
Q Consensus 334 ~~iG~~~i~l~~l~~~ 349 (532)
+.||.|++.++++-..
T Consensus 80 e~iG~~sL~l~s~gee 95 (103)
T cd08684 80 RTIGECSLSLRTLSTQ 95 (103)
T ss_pred ceeeEEEeecccCCHH
Confidence 9999999999988765
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0015 Score=65.33 Aligned_cols=232 Identities=16% Similarity=0.278 Sum_probs=154.7
Q ss_pred EEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeC-------CCCCEEEEEEEEcc
Q 009539 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD-------PESQAVELAVYDWE 328 (532)
Q Consensus 256 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~-------~~~~~L~v~v~d~d 328 (532)
+.|+|+++++.+... ...-.+...+++... .|..+..+..|.||.+....+.. .....|++++|..|
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l---~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~ 75 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESL---ETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVD 75 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCcee---eecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEec
Confidence 578999999998763 346688888888765 67788889999999888877642 23678999999988
Q ss_pred -CCCCCCeeEEEEEeCccC---CCC--CCeEEEEecccccccCCCCCCccccEEEEEEEEEEccCCCCC--c---c---c
Q 009539 329 -QVGKHDKMGMNVVPLKEL---TPE--EPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLP--K---S---F 394 (532)
Q Consensus 329 -~~~~d~~iG~~~i~l~~l---~~~--~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~--~---~---~ 394 (532)
..++.+.+|.+.++|+.. ..+ .....|++|+.... +-.+.+-+|.+.+........... + . .
T Consensus 76 ~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~----~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p 151 (340)
T PF12416_consen 76 GSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSS----KYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAP 151 (340)
T ss_pred CCCCcceeccEEEEEccccccccccccccCCCeeEcccccc----ccccCCccEEEEEEEeccccccCCccccccccCCC
Confidence 567788999999999998 544 45667888865322 123345677777776654432100 0 0 0
Q ss_pred cccc-ccc----------------------cCCCCCCCCceEEEEEEeeeecCCCC---------CCCCCEEEEEEcCee
Q 009539 395 EESQ-TVQ----------------------KAPENTPAGGGLLVVIVHEAQDVEGK---------HHTNPYARILFRGEE 442 (532)
Q Consensus 395 ~~~~-~~~----------------------~~~~~~~~~~g~L~v~i~~a~~L~~~---------~~~dpyv~v~~~~~~ 442 (532)
...+ ..+ -.|.+.....-.|.|++..|+||..- +...-|....+-|..
T Consensus 152 ~~~~~~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~ 231 (340)
T PF12416_consen 152 PRQGHVPPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGND 231 (340)
T ss_pred cccCCCcccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcE
Confidence 0000 000 00111122355788999999988542 123446666677888
Q ss_pred EEEeeecCCCCCccc-ceEE-EEecCC--------CCCCeEEEEEEEccccccCCCCCceeEEEEEechhhhcc
Q 009539 443 RKTKHVKKNRDPRWE-EEFQ-FMLEEP--------PTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSN 506 (532)
Q Consensus 443 ~kT~vv~~t~nP~w~-e~f~-f~v~~~--------~~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~ 506 (532)
..|...+...+|.|. |.-. +.++.. .....|.|.++.. +..||.+.+++..++..
T Consensus 232 Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~g---------~~~Lg~~~v~l~~Ll~~ 296 (340)
T PF12416_consen 232 VTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCCG---------NQSLGSTSVPLQPLLPK 296 (340)
T ss_pred eEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEeeC---------CcEEEEEEEEhhhccCC
Confidence 888888888899875 2233 555532 1234677777764 57899999999999753
|
|
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=97.78 E-value=3.3e-05 Score=83.12 Aligned_cols=92 Identities=15% Similarity=0.274 Sum_probs=74.7
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEcc
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWE 328 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d 328 (532)
.+.-.|+..+++++|+ ++. .|+|..+-.-|.+ ..||.+.++|.||+|||...|.+........++.|||.+
T Consensus 49 ~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~g~~--~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (644)
T PLN02964 49 AEDFSGIALLTLVGAE----MKF---KDKWLACVSFGEQ--TFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETN 119 (644)
T ss_pred cccccCeEEEEeehhh----hcc---CCcEEEEEEecce--eeeeccccccCCcccchhhceEeccCCcceEEEEEEecC
Confidence 3456799999999998 333 4887665444433 269999999999999999999998776667899999999
Q ss_pred CCCCCCeeEEEEEeCccCCCC
Q 009539 329 QVGKHDKMGMNVVPLKELTPE 349 (532)
Q Consensus 329 ~~~~d~~iG~~~i~l~~l~~~ 349 (532)
.+++++++|.|++++.++...
T Consensus 120 ~~s~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 120 RLSKNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred CCCHHHhhhheeecHhhccHH
Confidence 999999999999988776543
|
|
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=4.3e-05 Score=75.38 Aligned_cols=118 Identities=19% Similarity=0.308 Sum_probs=93.6
Q ss_pred CceEEEEEEeeeecCCCC---CCCCCEEEEEEc-----CeeEEEeeecCCCCCcccceEEEEecCCCC----------CC
Q 009539 410 GGGLLVVIVHEAQDVEGK---HHTNPYARILFR-----GEERKTKHVKKNRDPRWEEEFQFMLEEPPT----------ND 471 (532)
Q Consensus 410 ~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~-----~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~----------~~ 471 (532)
....|.+.|.++++++.. ...|.|+++.+. .++.||.+++.|.+|.|+|.|...+...+. ..
T Consensus 365 ~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~ 444 (523)
T KOG3837|consen 365 KDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL 444 (523)
T ss_pred chhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence 345677888888888653 357889988762 234599999999999999999999986321 12
Q ss_pred eEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCC---CeEEEEEEEEE
Q 009539 472 RLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK---NGRIQIELQWR 530 (532)
Q Consensus 472 ~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~---~G~i~l~~~w~ 530 (532)
-+.++++.+. |++++|.++|.+++.|.-|...-.+...|+|.++. +|.+.++++.+
T Consensus 445 g~kfeifhkg---gf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 445 GKKFEIFHKG---GFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIR 503 (523)
T ss_pred CeeEEEeecc---ccccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEe
Confidence 5889999886 45789999999999999887777888999998874 69999888765
|
|
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0001 Score=72.14 Aligned_cols=104 Identities=23% Similarity=0.333 Sum_probs=83.8
Q ss_pred CceEEEEEEeeeecCCCC----CCCCCEEEEEEcCe-----eEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEc
Q 009539 410 GGGLLVVIVHEAQDVEGK----HHTNPYARILFRGE-----ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSV 480 (532)
Q Consensus 410 ~~g~L~v~i~~a~~L~~~----~~~dpyv~v~~~~~-----~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~ 480 (532)
..|.+.|.|++|++|..+ ..++|||+||+... +.+|+...+|.+|.|.+...|.-.. ....|.+.||-.
T Consensus 267 ~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp--~~k~Lq~tv~gd 344 (405)
T KOG2060|consen 267 SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSP--PGKYLQGTVWGD 344 (405)
T ss_pred ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCC--CccEEEEEEecc
Confidence 578899999999999643 37999999998654 3499999999999888877776543 346899999976
Q ss_pred cccccCCCCCceeEEEEEechhhhccc-eeceEEEeCCC
Q 009539 481 SSRIGLLHPKETLGYIDINLSDVVSNK-RINEKYHLIDS 518 (532)
Q Consensus 481 ~~~~~~~~~d~~lG~~~i~L~~l~~~~-~~~~~~~L~~~ 518 (532)
-.+ +..+.++|.+.+.|.++-... ....||+|-+.
T Consensus 345 ygR---md~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs 380 (405)
T KOG2060|consen 345 YGR---MDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS 380 (405)
T ss_pred ccc---cchHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence 544 678999999999999997654 67899999754
|
|
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=97.58 E-value=5.5e-05 Score=58.52 Aligned_cols=92 Identities=15% Similarity=0.234 Sum_probs=66.4
Q ss_pred EEEeeeecCCC--C--CCCCCEEEEEE--cCe-eEEEeeecCCCCCcccceEEEEecCCCCCC-eEEEEEEEccccccCC
Q 009539 416 VIVHEAQDVEG--K--HHTNPYARILF--RGE-ERKTKHVKKNRDPRWEEEFQFMLEEPPTND-RLHVEVCSVSSRIGLL 487 (532)
Q Consensus 416 v~i~~a~~L~~--~--~~~dpyv~v~~--~~~-~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~-~l~v~V~d~~~~~~~~ 487 (532)
+++.+|+||.- . ..+.-|++--+ ... ..||+..+++.||+|.|+|.|.+......+ .|.+.|+.. +
T Consensus 3 itv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~------~ 76 (103)
T cd08684 3 ITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQ------T 76 (103)
T ss_pred EEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeecc------C
Confidence 67889999853 2 23445666433 222 359999999999999999999987643444 788999984 4
Q ss_pred CCCceeEEEEEechhhhccceeceEEE
Q 009539 488 HPKETLGYIDINLSDVVSNKRINEKYH 514 (532)
Q Consensus 488 ~~d~~lG~~~i~L~~l~~~~~~~~~~~ 514 (532)
.+++.||.+.+.|+++-.. +.++|.+
T Consensus 77 ~RKe~iG~~sL~l~s~gee-E~~HW~e 102 (103)
T cd08684 77 PRKRTIGECSLSLRTLSTQ-ETDHWLE 102 (103)
T ss_pred CccceeeEEEeecccCCHH-Hhhhhhc
Confidence 5789999999999987443 3355543
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00012 Score=78.75 Aligned_cols=100 Identities=19% Similarity=0.394 Sum_probs=79.1
Q ss_pred CceEEEEEEeeeecCCCCCCCCCEEE-EEEcCeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCC
Q 009539 410 GGGLLVVIVHEAQDVEGKHHTNPYAR-ILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLH 488 (532)
Q Consensus 410 ~~g~L~v~i~~a~~L~~~~~~dpyv~-v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~ 488 (532)
-+|++.+++++|+ .+..|+|.. +++|.+.+||.+.++|.||+||+...|.+... .....++.|||.++ ++
T Consensus 52 ~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~s 122 (644)
T PLN02964 52 FSGIALLTLVGAE----MKFKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKN-GPHLARISVFETNR----LS 122 (644)
T ss_pred ccCeEEEEeehhh----hccCCcEEEEEEecceeeeeccccccCCcccchhhceEeccC-CcceEEEEEEecCC----CC
Confidence 3799999999998 333588665 56788889999999999999999999998765 23457999999986 78
Q ss_pred CCceeEEEEEechhhhccc--eeceEEEeCCC
Q 009539 489 PKETLGYIDINLSDVVSNK--RINEKYHLIDS 518 (532)
Q Consensus 489 ~d~~lG~~~i~L~~l~~~~--~~~~~~~L~~~ 518 (532)
.++.+|.++++|.++...+ ...+-|.+.+.
T Consensus 123 ~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~ 154 (644)
T PLN02964 123 KNTLVGYCELDLFDFVTQEPESACESFDLLDP 154 (644)
T ss_pred HHHhhhheeecHhhccHHHHHHHHHHHHHHCC
Confidence 9999999999998887654 23344555444
|
|
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00058 Score=57.16 Aligned_cols=101 Identities=20% Similarity=0.321 Sum_probs=71.7
Q ss_pred EEEEEEEcCCCCcCC---------CC----CCCCcEEEEEEeC-CcCCceeeEeeCCCCCceeecEEEEEee--------
Q 009539 256 LHVKVVKAMNLKKKD---------LL----GASDPYVKLKITE-DKLPSKKTTVKHKNLNPEWNEEYNFTVR-------- 313 (532)
Q Consensus 256 L~V~v~~A~~L~~~d---------~~----g~~dpyv~v~~~~-~~~~~~~T~v~~~t~nP~Wne~f~f~v~-------- 313 (532)
|.|.|++|.+|+..- .. -.-++||++.+.- .+...++|+++-++.-|.|+.+++|.+.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 467888988887421 10 1238999999642 1223468999999999999999999875
Q ss_pred C-------CCCCEEEEEEEEccCC----------CCCCeeEEEEEeCccCCCCC-CeEEEE
Q 009539 314 D-------PESQAVELAVYDWEQV----------GKHDKMGMNVVPLKELTPEE-PSVKTL 356 (532)
Q Consensus 314 ~-------~~~~~L~v~v~d~d~~----------~~d~~iG~~~i~l~~l~~~~-~~~~~l 356 (532)
+ .+...+.++||+.+.. .+|-++|.+.||+.+|.... +...|+
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~ 141 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWY 141 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccc
Confidence 1 1256799999997632 34668999999999987542 334444
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.019 Score=50.41 Aligned_cols=120 Identities=18% Similarity=0.245 Sum_probs=88.3
Q ss_pred CCceEEEEEEeeeecCCC-----CCCCCC--EEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCC------------C
Q 009539 409 AGGGLLVVIVHEAQDVEG-----KHHTNP--YARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPP------------T 469 (532)
Q Consensus 409 ~~~g~L~v~i~~a~~L~~-----~~~~dp--yv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~------------~ 469 (532)
.....|+++|..++-.-. .+..+. ++-+.++++.++|+.+.-+.+|.|+|.|-|.++... .
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~ 85 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI 85 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence 356788999998874421 023344 444556899999999999999999999999997642 2
Q ss_pred CCeEEEEEEEccccccCCCCCceeEEEEEechhhhcccee--ceEEEeCCC------CCeEEEEEEEEEeC
Q 009539 470 NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRI--NEKYHLIDS------KNGRIQIELQWRTA 532 (532)
Q Consensus 470 ~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~--~~~~~L~~~------~~G~i~l~~~w~p~ 532 (532)
.+.+++-|.-.+.+ +...++|+-.++.+.++..+.. .-...|.+. ..|-+.++++..|+
T Consensus 86 ~~pihivli~~d~~----~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 86 SDPIHIVLIRTDPS----GETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPN 152 (156)
T ss_pred CCceEEEEEEecCC----CceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecC
Confidence 34788888877652 3458999999999999986543 455666543 25899999998874
|
|
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.00052 Score=67.42 Aligned_cols=108 Identities=26% Similarity=0.438 Sum_probs=85.3
Q ss_pred CeEEEEEEEEEcCCCCcCCCC-CCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEE-Ec
Q 009539 252 PVGILHVKVVKAMNLKKKDLL-GASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVY-DW 327 (532)
Q Consensus 252 ~~g~L~V~v~~A~~L~~~d~~-g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~-d~ 327 (532)
.+|.|.|.|++|++|..+... ..++|||+|++.+.. ..+.+|+...+|.+|-+.+...|.- .+....|.+.+| |+
T Consensus 267 ~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~-sp~~k~Lq~tv~gdy 345 (405)
T KOG2060|consen 267 SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQ-SPPGKYLQGTVWGDY 345 (405)
T ss_pred ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhcc-CCCccEEEEEEeccc
Confidence 578999999999999876543 257999999997543 3456888889999998887766665 345788999998 46
Q ss_pred cCCCCCCeeEEEEEeCccCCCCC-CeEEEEeccc
Q 009539 328 EQVGKHDKMGMNVVPLKELTPEE-PSVKTLDLLK 360 (532)
Q Consensus 328 d~~~~d~~iG~~~i~l~~l~~~~-~~~~~l~l~~ 360 (532)
.+...+.|+|.+.+-+.+|.... ....|+++..
T Consensus 346 gRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfg 379 (405)
T KOG2060|consen 346 GRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFG 379 (405)
T ss_pred cccchHHHhhHHHHHhhhhccccccceeeeeccC
Confidence 66777889999999999998775 6667877754
|
|
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0071 Score=60.51 Aligned_cols=112 Identities=17% Similarity=0.353 Sum_probs=88.8
Q ss_pred EEEEEeeeecCCCCCCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCC------CCCCeEEEEEEEccccccCC
Q 009539 414 LVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEP------PTNDRLHVEVCSVSSRIGLL 487 (532)
Q Consensus 414 L~v~i~~a~~L~~~~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~------~~~~~l~v~V~d~~~~~~~~ 487 (532)
+.|.|.+|++.+......-.+..++++....|..+.++..|.||....+.+... ..+..|+++++.-+.. -
T Consensus 2 ivl~i~egr~F~~~~~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~---~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRPRHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGS---T 78 (340)
T ss_pred EEEEEecccCCCCCCCccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCC---C
Confidence 578899999999876677789999999999999999999999999999988642 2334799999988732 3
Q ss_pred CCCceeEEEEEechhh---hcc--ceeceEEEeCCCC------CeEEEEEEE
Q 009539 488 HPKETLGYIDINLSDV---VSN--KRINEKYHLIDSK------NGRIQIELQ 528 (532)
Q Consensus 488 ~~d~~lG~~~i~L~~l---~~~--~~~~~~~~L~~~~------~G~i~l~~~ 528 (532)
+..+.+|.+.++|+.. ..+ ....+||+|.+.+ .-+|.+.+.
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ 130 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLS 130 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEE
Confidence 5788999999999998 444 3567999998762 345555543
|
|
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.00099 Score=66.06 Aligned_cols=126 Identities=16% Similarity=0.198 Sum_probs=92.4
Q ss_pred CCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeC--CcCCceeeEeeCCCCCceeecEEEEEeeCC-----------CC
Q 009539 251 RPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITE--DKLPSKKTTVKHKNLNPEWNEEYNFTVRDP-----------ES 317 (532)
Q Consensus 251 ~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~--~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~-----------~~ 317 (532)
.....|.+.|+++.+++-.......|-|+.+.+.- +.....+|.++++|.+|.|+|.|.+.+... ..
T Consensus 364 l~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr 443 (523)
T KOG3837|consen 364 LKDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKR 443 (523)
T ss_pred cchhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHh
Confidence 34556778888888776544223347788887632 222345899999999999999999998651 13
Q ss_pred CEEEEEEEEccCC-CCCCeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEE
Q 009539 318 QAVELAVYDWEQV-GKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 383 (532)
Q Consensus 318 ~~L~v~v~d~d~~-~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~ 383 (532)
..++|++|+...+ ..|.++|.+.+.+..|.........+++... .....|.|.+.+...
T Consensus 444 ~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DG-------RK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 444 LGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDG-------RKAVGGKLEVKVRIR 503 (523)
T ss_pred cCeeEEEeeccccccccceeceeeeeehhhhcccchhhceecccc-------ccccCCeeEEEEEEe
Confidence 4689999998764 6688999999999999887777777776321 245678888888765
|
|
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.033 Score=49.59 Aligned_cols=89 Identities=22% Similarity=0.328 Sum_probs=60.5
Q ss_pred EEEEEEEEEcCCCCcCCCCCCCCcEEEEEE--eCCcCC-ceeeEeeCCCCCceeecEEEEEee--C-CCCCEEEEEEEEc
Q 009539 254 GILHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKLP-SKKTTVKHKNLNPEWNEEYNFTVR--D-PESQAVELAVYDW 327 (532)
Q Consensus 254 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~--~~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~--~-~~~~~L~v~v~d~ 327 (532)
..++|+|++|.++.-.+ .+|-||++.+ +++... ...|+.+.. .++.|||...|++. + +....|.|++|+.
T Consensus 8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 36889999999987543 3688888865 333221 123444443 67999999999764 2 2367899999997
Q ss_pred cCCC----CCCeeEEEEEeCccC
Q 009539 328 EQVG----KHDKMGMNVVPLKEL 346 (532)
Q Consensus 328 d~~~----~d~~iG~~~i~l~~l 346 (532)
...+ ....+|.+.++|-+-
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred ecccCCCCceEEEEEEEEEEECC
Confidence 6421 124699999888763
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0044 Score=67.06 Aligned_cols=115 Identities=23% Similarity=0.339 Sum_probs=83.2
Q ss_pred ccceeeeCCcccccC--CCCCcc---CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc----CCceeeEeeC-
Q 009539 228 VANMYLWPKTLEVPI--LDPSKA---YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK----LPSKKTTVKH- 297 (532)
Q Consensus 228 ~~~~~v~P~~~~~~l--~~~~~~---~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~----~~~~~T~v~~- 297 (532)
-+++++.|..|..|= +|+... ...-.+.+.|+|+++.-|..++ ...||.|.+-+-. .+.+||++..
T Consensus 672 ~sGYllKPdfmRrpDr~fdPFse~~VdgvIA~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~ 747 (1189)
T KOG1265|consen 672 GSGYLLKPDFMRRPDRQFDPFSESPVDGVIAATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQG 747 (1189)
T ss_pred CccceeChHHhhCCCcCcCCcccCcccceEEeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccC
Confidence 467788888776653 233221 2234578999999999997765 3589999986522 1345677664
Q ss_pred CCCCceeecE-EEEE-eeCCCCCEEEEEEEEccCCCCCCeeEEEEEeCccCCCCC
Q 009539 298 KNLNPEWNEE-YNFT-VRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEE 350 (532)
Q Consensus 298 ~t~nP~Wne~-f~f~-v~~~~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~~ 350 (532)
++.||+|+|+ |.|. |--++-..|+|.||+.+ ..+||+-.+|+..+..+-
T Consensus 748 n~~npvy~eepfvF~KVvLpeLA~lRiavyeEg----gK~ig~RIlpvd~l~~GY 798 (1189)
T KOG1265|consen 748 NSFNPVYEEEPFVFRKVVLPELASLRIAVYEEG----GKFIGQRILPVDGLNAGY 798 (1189)
T ss_pred CCCCcccccCCcccceecccchhheeeeeeccC----CceeeeeccchhcccCcc
Confidence 7999999965 7775 44455678999999975 569999999999999874
|
|
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.028 Score=50.06 Aligned_cols=91 Identities=29% Similarity=0.410 Sum_probs=64.0
Q ss_pred eEEEEEEeeeecCCCCCCCCCEEEEEE--cCeeE----EEeeecCCCCCcccceEEEEec--CCCCCCeEEEEEEEcccc
Q 009539 412 GLLVVIVHEAQDVEGKHHTNPYARILF--RGEER----KTKHVKKNRDPRWEEEFQFMLE--EPPTNDRLHVEVCSVSSR 483 (532)
Q Consensus 412 g~L~v~i~~a~~L~~~~~~dpyv~v~~--~~~~~----kT~vv~~t~nP~w~e~f~f~v~--~~~~~~~l~v~V~d~~~~ 483 (532)
..++|.|+++.+++-....|-||++.+ +++.. .|+.+.. .++.|||-.+|++. +.+.+..|.++||+....
T Consensus 8 ~~~~v~i~~~~~~~~~~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~~ 86 (158)
T cd08398 8 SNLRIKILCATYVNVNDIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVKGR 86 (158)
T ss_pred CCeEEEEEeeccCCCCCcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEecc
Confidence 467899999999887666788888754 55432 4554443 78999999888764 455667999999997642
Q ss_pred ccCCCCCceeEEEEEechhh
Q 009539 484 IGLLHPKETLGYIDINLSDV 503 (532)
Q Consensus 484 ~~~~~~d~~lG~~~i~L~~l 503 (532)
.+.-.....+|.+.++|-+-
T Consensus 87 ~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 87 KGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred cCCCCceEEEEEEEEEEECC
Confidence 10001235799999999874
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.24 Score=43.28 Aligned_cols=124 Identities=24% Similarity=0.336 Sum_probs=80.3
Q ss_pred CeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeC-CCCCceeecEEEEEeeC--------CCCCEEEE
Q 009539 252 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKH-KNLNPEWNEEYNFTVRD--------PESQAVEL 322 (532)
Q Consensus 252 ~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~--------~~~~~L~v 322 (532)
..-.+.|++++..+++. ....-|++...+.......+|.... .+..-.|||+|.+.+.- .....+.|
T Consensus 5 ~kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~ 80 (143)
T PF10358_consen 5 VKFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF 80 (143)
T ss_pred eeEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence 34568899999998876 2234455554443321123444333 34456899999987641 22457889
Q ss_pred EEEEccCCCCCCeeEEEEEeCccCCCC--CCeEEEEecccccccCCCCCCccccEEEEEEEEEEccC
Q 009539 323 AVYDWEQVGKHDKMGMNVVPLKELTPE--EPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKE 387 (532)
Q Consensus 323 ~v~d~d~~~~d~~iG~~~i~l~~l~~~--~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~ 387 (532)
.|+.....++...+|.+.++|.+.... ......+.+.. .......|++++.+.+..+
T Consensus 81 ~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~--------~~~~~a~L~isi~~~~~~~ 139 (143)
T PF10358_consen 81 SVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKK--------CKKSNATLSISISLSELRE 139 (143)
T ss_pred EEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCcc--------CCCCCcEEEEEEEEEECcc
Confidence 999875434446999999999999875 34455555532 1356778999999887643
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.052 Score=49.26 Aligned_cols=92 Identities=20% Similarity=0.399 Sum_probs=65.0
Q ss_pred eEEEEEEeeeecCCC-CCCCCCEEEE--EEcCee----EEEeeecCCCCCcccceEEEEec--CCCCCCeEEEEEEEccc
Q 009539 412 GLLVVIVHEAQDVEG-KHHTNPYARI--LFRGEE----RKTKHVKKNRDPRWEEEFQFMLE--EPPTNDRLHVEVCSVSS 482 (532)
Q Consensus 412 g~L~v~i~~a~~L~~-~~~~dpyv~v--~~~~~~----~kT~vv~~t~nP~w~e~f~f~v~--~~~~~~~l~v~V~d~~~ 482 (532)
..++|+|+++.++.. ....+-||++ +.|++. ..|+.+.-..++.|||.++|.+. +.+.+..|.+.||+...
T Consensus 8 ~~f~i~i~~~~~~~~~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~~ 87 (173)
T cd08693 8 EKFSITLHKISNLNAAERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVSK 87 (173)
T ss_pred CCEEEEEEEeccCccCCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEecc
Confidence 367899999999986 4456677776 445554 36666665678999999888664 55666799999998753
Q ss_pred cc-c-----------CCCCCceeEEEEEechhh
Q 009539 483 RI-G-----------LLHPKETLGYIDINLSDV 503 (532)
Q Consensus 483 ~~-~-----------~~~~d~~lG~~~i~L~~l 503 (532)
.. + .-+.+..||.+.++|-+-
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 88 KAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred cccccccccccccccccCcceEEEEEeEEEEcc
Confidence 20 0 001246999999999874
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.19 Score=44.78 Aligned_cols=92 Identities=25% Similarity=0.399 Sum_probs=60.8
Q ss_pred EEEEEEEEcCCCCcCCCCCCCCcEEEEEE--eCCcC-CceeeEeeCCCCCceeecEEEEEee--C-CCCCEEEEEEEEcc
Q 009539 255 ILHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKL-PSKKTTVKHKNLNPEWNEEYNFTVR--D-PESQAVELAVYDWE 328 (532)
Q Consensus 255 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~--~~~~~-~~~~T~v~~~t~nP~Wne~f~f~v~--~-~~~~~L~v~v~d~d 328 (532)
.++|++....++...+ ....+-|+++.+ +++.. ....|.......++.|||...|++. + +....|.+.+|+.+
T Consensus 9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 5678888888776521 234566777755 33322 2223433333478999999999854 2 33678999999987
Q ss_pred CCC--CCCeeEEEEEeCccCC
Q 009539 329 QVG--KHDKMGMNVVPLKELT 347 (532)
Q Consensus 329 ~~~--~d~~iG~~~i~l~~l~ 347 (532)
..+ ++..||.+.++|-+-.
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~~ 108 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDYK 108 (156)
T ss_pred cCCCCcceEEEEEeEEeEccc
Confidence 554 4679999999987753
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.15 Score=44.91 Aligned_cols=128 Identities=14% Similarity=0.189 Sum_probs=87.1
Q ss_pred CeEEEEEEEEEcCCCCcCCCC--CCCCcEEEE--EEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCC-----------
Q 009539 252 PVGILHVKVVKAMNLKKKDLL--GASDPYVKL--KITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE----------- 316 (532)
Q Consensus 252 ~~g~L~V~v~~A~~L~~~d~~--g~~dpyv~v--~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~----------- 316 (532)
-...|.++|..++-....-.. |..+.-..+ .+++++ ++|+.+..+.+|.|+|.|-|.+....
T Consensus 7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QR---F~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~ll 83 (156)
T PF15627_consen 7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQR---FRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLL 83 (156)
T ss_pred CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCce---EecCCcccccCCCCCCcEEEEecccccccccchhHhh
Confidence 345789999988865432111 344444444 445555 48999999999999999999987432
Q ss_pred --CCEEEEEEEEccCCCCCCeeEEEEEeCccCCCCCCe--EEEEecccccccCCCCCCccccEEEEEEEEEEcc
Q 009539 317 --SQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPS--VKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFK 386 (532)
Q Consensus 317 --~~~L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~--~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~ 386 (532)
.+.+.+.|--.|..+...++|+-.++=..+...... ....++... . .......|-|.++++..|..
T Consensus 84 s~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~-~---~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 84 SISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGV-G---PESKVPVGILDLRLELLPNL 153 (156)
T ss_pred cCCCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEecc-C---CCCccceeEEEEEEEeecCC
Confidence 356788888877777778999988887777655443 445555321 1 11245889999999998853
|
|
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.073 Score=48.31 Aligned_cols=91 Identities=18% Similarity=0.288 Sum_probs=60.8
Q ss_pred EEEEEEEEEcCCCCcCCCCCCCCcEEEEEE--eCCcCC-ceeeEeeCCCCCceeecEEEEEee--C-CCCCEEEEEEEEc
Q 009539 254 GILHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKLP-SKKTTVKHKNLNPEWNEEYNFTVR--D-PESQAVELAVYDW 327 (532)
Q Consensus 254 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~--~~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~--~-~~~~~L~v~v~d~ 327 (532)
..++|+|+.+.++.-.+ ...+-||++.+ +++... ...|+....+.++.|||.+.|++. + |....|.|.+|+.
T Consensus 8 ~~f~i~i~~~~~~~~~~--~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNAAE--RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCccCC--CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 36899999999998622 34567777644 443331 235555555677999999999764 2 3367899999997
Q ss_pred cCCC----------------CCCeeEEEEEeCccC
Q 009539 328 EQVG----------------KHDKMGMNVVPLKEL 346 (532)
Q Consensus 328 d~~~----------------~d~~iG~~~i~l~~l 346 (532)
.... .+..||.+.++|-+-
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEcc
Confidence 5322 135788887776653
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.45 Score=41.55 Aligned_cols=115 Identities=20% Similarity=0.316 Sum_probs=77.1
Q ss_pred eEEEEEEeeeecCCCCCCCCCEEEEEEcCee---EEEeeec-CCCCCcccceEEEEecCC---C----CCCeEEEEEEEc
Q 009539 412 GLLVVIVHEAQDVEGKHHTNPYARILFRGEE---RKTKHVK-KNRDPRWEEEFQFMLEEP---P----TNDRLHVEVCSV 480 (532)
Q Consensus 412 g~L~v~i~~a~~L~~~~~~dpyv~v~~~~~~---~kT~vv~-~t~nP~w~e~f~f~v~~~---~----~~~~l~v~V~d~ 480 (532)
-.+.++|++..+++. ....-||+...+++. .+|.... ....-.|||.|.+.+.-. . ....+.+.|+..
T Consensus 7 f~~~l~i~~l~~~p~-~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~ 85 (143)
T PF10358_consen 7 FQFDLTIHELENLPS-SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEV 85 (143)
T ss_pred EEEEEEEEEeECcCC-CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEe
Confidence 456788889888887 233445555555543 3443332 455667999999987531 1 122688888877
Q ss_pred cccccCCCCCceeEEEEEechhhhcc--ceeceEEEeCCC--CCeEEEEEEEEEe
Q 009539 481 SSRIGLLHPKETLGYIDINLSDVVSN--KRINEKYHLIDS--KNGRIQIELQWRT 531 (532)
Q Consensus 481 ~~~~~~~~~d~~lG~~~i~L~~l~~~--~~~~~~~~L~~~--~~G~i~l~~~w~p 531 (532)
... +....+|.+.|+|.+.... +.....++|... .+..+++++++.+
T Consensus 86 ~~~----~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~ 136 (143)
T PF10358_consen 86 DGS----GKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSE 136 (143)
T ss_pred cCC----CccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEE
Confidence 421 1236999999999999984 466788998775 3578888888765
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.39 Score=43.62 Aligned_cols=73 Identities=19% Similarity=0.243 Sum_probs=46.1
Q ss_pred EEEEEEEEcCCCCcCCCCCCCCcEEEEEE--eCCcCCceeeEeeCCCCCceeecEEEEEee--C-CCCCEEEEEEEEcc
Q 009539 255 ILHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKLPSKKTTVKHKNLNPEWNEEYNFTVR--D-PESQAVELAVYDWE 328 (532)
Q Consensus 255 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~--~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~--~-~~~~~L~v~v~d~d 328 (532)
.++|+|..+.++ ..+......-||++.+ ++......+|+.+..+.++.|||...|++. + +....|.|.||+..
T Consensus 11 ~friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 11 KFRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CEEEEEEeeccc-CcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 567788887633 3222222335666533 333333336677677778999999888865 2 23678999999974
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.27 Score=38.80 Aligned_cols=84 Identities=20% Similarity=0.330 Sum_probs=59.7
Q ss_pred CCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCCeeEEEEEeCccCCCCCCeEE
Q 009539 275 SDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVK 354 (532)
Q Consensus 275 ~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~ 354 (532)
++..+.+.+++..+ .+|.-+ .-.+..|++.|.+.+.. +..|+|.||-.|- ..+.|...+.|++... ..
T Consensus 9 ~eV~avLklDn~~V--gqT~Wk-~~s~q~WDQ~Fti~LdR--sRELEI~VywrD~---RslCav~~lrLEd~~~----~~ 76 (98)
T cd08687 9 SEVSAVLKLDNTVV--GQTQWK-PKSNQAWDQSFTLELER--SRELEIAVYWRDW---RSLCAVKFLKLEDERH----EV 76 (98)
T ss_pred cceEEEEEEcCeEE--eecccc-ccccccccceeEEEeec--ccEEEEEEEEecc---hhhhhheeeEhhhhcc----cc
Confidence 67788888886554 466553 33578899999999964 5899999998763 4577888888887322 22
Q ss_pred EEecccccccCCCCCCccccEEEEEEEE
Q 009539 355 TLDLLKNMDLNDGQNEKSRGQLVVEFIY 382 (532)
Q Consensus 355 ~l~l~~~~~~~~~~~~~~~G~l~l~l~~ 382 (532)
.+ +-.+.|.+..+++|
T Consensus 77 ~~------------~lepqg~l~~ev~f 92 (98)
T cd08687 77 QL------------DMEPQLCLVAELTF 92 (98)
T ss_pred ee------------ccccccEEEEEEEe
Confidence 22 24578888888887
|
PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct |
| >KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.074 Score=51.24 Aligned_cols=118 Identities=18% Similarity=0.280 Sum_probs=77.5
Q ss_pred CCCeEEEEEEEEEcCCCCcCCC-CC-CCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEc
Q 009539 250 RRPVGILHVKVVKAMNLKKKDL-LG-ASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDW 327 (532)
Q Consensus 250 ~~~~g~L~V~v~~A~~L~~~d~-~g-~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~ 327 (532)
....|+|.+++.++++|+.... .| .-+-||++..+.+. ..||.+......=.|.|+|+..+.+. ..+.+-||.+
T Consensus 47 ~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh--~aRt~vrs~~~~f~w~e~F~~Dvv~~--~vl~~lvySW 122 (442)
T KOG1452|consen 47 VSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQH--PARTRVRSSGPGFAWAEDFKHDVVNI--EVLHYLVYSW 122 (442)
T ss_pred ecccceEEEEEecccccccChhccCceeeeeeeeeecccC--ccccccccCCCCccchhhceeecccc--eeeeEEEeec
Confidence 3467999999999999975432 23 45889999987543 34676665555567999999988763 6788899999
Q ss_pred cCCCCCCeeEEEEEeCccCCCC-CCeEEEEecccccccCCCCCCccccEEEEEEEEE
Q 009539 328 EQVGKHDKMGMNVVPLKELTPE-EPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 383 (532)
Q Consensus 328 d~~~~d~~iG~~~i~l~~l~~~-~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~ 383 (532)
+.-.++++.-.-.+.+..+... ..+..-+. -+++|++.+++.+.
T Consensus 123 ~pq~RHKLC~~g~l~~~~v~rqspd~~~Al~------------lePrgq~~~r~~~~ 167 (442)
T KOG1452|consen 123 PPQRRHKLCHLGLLEAFVVDRQSPDRVVALY------------LEPRGQPPLRLPLA 167 (442)
T ss_pred CchhhccccccchhhhhhhhhcCCcceeeee------------cccCCCCceecccC
Confidence 8766677643333433333322 12222222 35677777777554
|
|
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.14 Score=46.34 Aligned_cols=93 Identities=18% Similarity=0.225 Sum_probs=62.9
Q ss_pred EEEEEEEEEcCCCCcCCCCCCCCcEEEEEE--eCCcCCc-eeeEeeC----CCCCceeecEEEEEeeC---CCCCEEEEE
Q 009539 254 GILHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKLPS-KKTTVKH----KNLNPEWNEEYNFTVRD---PESQAVELA 323 (532)
Q Consensus 254 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~--~~~~~~~-~~T~v~~----~t~nP~Wne~f~f~v~~---~~~~~L~v~ 323 (532)
..+.|+|..+.+++........|-|+.+.+ +++.... ..|+... -...+.|||...|++.- +....|.|.
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it 87 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT 87 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence 468899999999988764445788888865 4333211 1333211 12357799999988642 336789999
Q ss_pred EEEccCCC---------CCCeeEEEEEeCccC
Q 009539 324 VYDWEQVG---------KHDKMGMNVVPLKEL 346 (532)
Q Consensus 324 v~d~d~~~---------~d~~iG~~~i~l~~l 346 (532)
+|+....+ .+..||.+.++|-+-
T Consensus 88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 99976543 356899999888764
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.21 Score=44.47 Aligned_cols=90 Identities=23% Similarity=0.376 Sum_probs=60.9
Q ss_pred eEEEEEEeeeecCCC--CCCCCCEEEEE--EcCee----EEEeeecCCCCCcccceEEEEe--cCCCCCCeEEEEEEEcc
Q 009539 412 GLLVVIVHEAQDVEG--KHHTNPYARIL--FRGEE----RKTKHVKKNRDPRWEEEFQFML--EEPPTNDRLHVEVCSVS 481 (532)
Q Consensus 412 g~L~v~i~~a~~L~~--~~~~dpyv~v~--~~~~~----~kT~vv~~t~nP~w~e~f~f~v--~~~~~~~~l~v~V~d~~ 481 (532)
..++|.++.+.++.. ....+-||++. .|++. ..|.....+.++.|||..+|++ .+.+.+..|.+.||+..
T Consensus 8 ~~~~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 8 FNLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CCeEEEEEeeccccccCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 356777777777654 23455666664 35542 2444444457899999988875 45566679999999986
Q ss_pred ccccCCCCCceeEEEEEechhh
Q 009539 482 SRIGLLHPKETLGYIDINLSDV 503 (532)
Q Consensus 482 ~~~~~~~~d~~lG~~~i~L~~l 503 (532)
... -..+..||.+.++|-+-
T Consensus 88 ~~~--~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 88 EPG--SKKEVPLGWVNVPLFDY 107 (156)
T ss_pred cCC--CCcceEEEEEeEEeEcc
Confidence 420 01357999999999874
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.072 Score=58.08 Aligned_cols=87 Identities=21% Similarity=0.273 Sum_probs=66.9
Q ss_pred CceEEEEEEeeeecCCCCCCCCCEEEEEEcC-------eeEEEeeec-CCCCCcccc-eEEEEecCCCCCCeEEEEEEEc
Q 009539 410 GGGLLVVIVHEAQDVEGKHHTNPYARILFRG-------EERKTKHVK-KNRDPRWEE-EFQFMLEEPPTNDRLHVEVCSV 480 (532)
Q Consensus 410 ~~g~L~v~i~~a~~L~~~~~~dpyv~v~~~~-------~~~kT~vv~-~t~nP~w~e-~f~f~v~~~~~~~~l~v~V~d~ 480 (532)
-++.+.|+|++++=|..+ ....||+|.+-| +.++|+++. ++.||+|+| .|.|.---.+.-..|.|.|+++
T Consensus 701 IA~t~sV~VISgqFLSdr-kvgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeE 779 (1189)
T KOG1265|consen 701 IAATLSVTVISGQFLSDR-KVGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEE 779 (1189)
T ss_pred EEeeEEEEEEeeeecccc-ccCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeecc
Confidence 456789999999977653 556999999854 345888877 588999996 5777643333446899999998
Q ss_pred cccccCCCCCceeEEEEEechhhhc
Q 009539 481 SSRIGLLHPKETLGYIDINLSDVVS 505 (532)
Q Consensus 481 ~~~~~~~~~d~~lG~~~i~L~~l~~ 505 (532)
+ ..+||+=.++++.+..
T Consensus 780 g--------gK~ig~RIlpvd~l~~ 796 (1189)
T KOG1265|consen 780 G--------GKFIGQRILPVDGLNA 796 (1189)
T ss_pred C--------CceeeeeccchhcccC
Confidence 5 4899999999988755
|
|
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.14 Score=45.73 Aligned_cols=74 Identities=20% Similarity=0.332 Sum_probs=52.9
Q ss_pred CCCCcEEEEEEe--CCcCC-ceeeEeeCCCCCceeecEEEEEeeC---CCCCEEEEEEEEccCCCCCCeeEEEEEeCccC
Q 009539 273 GASDPYVKLKIT--EDKLP-SKKTTVKHKNLNPEWNEEYNFTVRD---PESQAVELAVYDWEQVGKHDKMGMNVVPLKEL 346 (532)
Q Consensus 273 g~~dpyv~v~~~--~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~~---~~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~l 346 (532)
..+|-||++.+- +.... .-+|+.+.-+..+.|||...|++.- +....|.|+|||.+..++...+|.++++|-+-
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 446788888663 32221 1256666666778999999998752 23678999999987666677999999998764
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >KOG3532 consensus Predicted protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.11 Score=55.07 Aligned_cols=218 Identities=17% Similarity=0.271 Sum_probs=130.0
Q ss_pred CCCCceeCCCCcchHH---------HHHHHHhhchhH--HHHHH----HHHHHHHHHHHHhc-CCCceeeeEEEeEeeCC
Q 009539 58 EIPLWVKCPDYDRVDW---------LNKFLELMWPYL--DKAIC----KTAKNIAKPIIAEQ-IPKYKIESVEFETLTLG 121 (532)
Q Consensus 58 ~~p~w~~~~d~E~~~W---------lN~~l~~~Wp~~--~~~~~----~~i~~~~~~~l~~~-~p~~~i~~~~~~~~~lG 121 (532)
+.|.|..+- |.-+| +|.++.....-. ..+.. +.....++.++... .-.. +..+++.++-||
T Consensus 81 ~~~t~~~~~--~~~~~~~~AS~c~s~~~V~h~lfqE~k~a~~~r~w~~~Rl~~e~~~~~~~~~~g~L-L~~~~i~elElg 157 (1051)
T KOG3532|consen 81 ELRTFLKSG--EDGQGISKASSCNSISLVLHMLFQEHKDTRALRRWVHKRLQMEMNDITTRSAAGRL-LQEIRIRELELG 157 (1051)
T ss_pred ccccccccc--ccchhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhh-hcccceehhhhc
Confidence 588998542 33344 455555544311 12222 22233333444432 2333 789999999999
Q ss_pred CCCCeEeeEEEEecC------------C-------------ceEEEEeeeeEeCCCceEEEEEE-eeeEEEEEEEEEEEE
Q 009539 122 TLPPTFQGMKVYVTD------------E-------------KELIMEPCLKWAANPNVTIGVKA-FGLKATVQVVDLQVF 175 (532)
Q Consensus 122 ~~~p~i~~v~~~~~~------------~-------------~~~~ld~~~~~~~~~~i~l~~~~-~~~~~~v~v~~~~~~ 175 (532)
.+.|.+++.+++.-+ + ..+.+=.++.|.|+.--++.+.. .+.+..+.|+-.+++
T Consensus 158 ~~f~~~~sLtvH~i~~~s~~l~~~q~sk~R~~~~~~~~~~i~~~~~~ldidy~G~fTtsid~~s~~~kk~S~~iKl~~l~ 237 (1051)
T KOG3532|consen 158 TKFMTINSLRVHSVENLSEFLKYAQTSKHRFILSPVNVYCIQKIVFILDIDYSGGFTTSIDVSTIIAKKASLSVKITKLT 237 (1051)
T ss_pred cccccccceEEeecccHHHHHHhhhhhhhhcccCCcceecccccccccccccCCCcceecCCccccccCCceeEEEEEec
Confidence 999999999998611 1 12345567888888766666655 334455566678999
Q ss_pred EEeEEEecCCCCCCCeeeEEEEEccCCceEEEEEEE--cccccc-CCchh-hhhhh--ccceeeeCCcc-------cccC
Q 009539 176 AQPRITLKPLVPAFPCFANIYVSLMEKPHVDFGLKL--VGADLM-SIPGL-YRFVQ--VANMYLWPKTL-------EVPI 242 (532)
Q Consensus 176 g~~rv~l~pl~~~~P~~~~v~~sf~~~P~id~~~~~--~g~~~~-~~P~l-~~~i~--~~~~~v~P~~~-------~~~l 242 (532)
|.+|+.+. .-....++++|+..|.+...++. .|..+. .||.+ +.-+. +...-.||++- ..|+
T Consensus 238 Gm~r~~~~-----r~py~hw~~sf~G~P~~e~di~s~~qg~qLQ~~I~q~i~~~ir~~~~rKhT~pnyK~ry~pff~~~~ 312 (1051)
T KOG3532|consen 238 GMVRVILS-----RQPYHHWTFSFVGQPIFETDINSQIQGHQLQRLIPQIIKEAIRRSLQRKHTWPNYKIRYRPFFPNPI 312 (1051)
T ss_pred cceeEEEE-----eccceeeeeeeccCchhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcchhhhccccccCcc
Confidence 99999886 23346789999999987655532 222222 24442 22222 23334455531 1111
Q ss_pred CCCC-----ccCCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeC
Q 009539 243 LDPS-----KAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITE 285 (532)
Q Consensus 243 ~~~~-----~~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~ 285 (532)
.... .---.+.|.+.|++.++..|... .++..-||.+.+.+
T Consensus 313 ~~a~~~~~s~~~i~~~G~~~V~~lE~srL~~~--~k~~e~Yct~T~e~ 358 (1051)
T KOG3532|consen 313 FQASPPINSFTHIKMEGGIEVTVLECSRLKDK--NKNYEVYCTVTIES 358 (1051)
T ss_pred cccCcchhhhhheeccCceeEeehhhhhhhcc--CCccceeeeccccC
Confidence 1111 11224679999999999888654 47889999998864
|
|
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.27 Score=43.07 Aligned_cols=55 Identities=22% Similarity=0.409 Sum_probs=40.5
Q ss_pred eeEeeCCC-CCceeecEEEEEee--C-CCCCEEEEEEEEccCCCCC----CeeEEEEEeCccC
Q 009539 292 KTTVKHKN-LNPEWNEEYNFTVR--D-PESQAVELAVYDWEQVGKH----DKMGMNVVPLKEL 346 (532)
Q Consensus 292 ~T~v~~~t-~nP~Wne~f~f~v~--~-~~~~~L~v~v~d~d~~~~d----~~iG~~~i~l~~l 346 (532)
.|....-+ .++.|||...|++. + |....|.|.||..+..... ..||.+.++|-+.
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 55555555 79999999999864 2 3477999999998865555 6999999998776
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
| >cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.92 Score=35.87 Aligned_cols=83 Identities=16% Similarity=0.181 Sum_probs=57.4
Q ss_pred CCCEEEEEEcCeeE-EEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCCCCceeEEEEEechhhhccce
Q 009539 430 TNPYARILFRGEER-KTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKR 508 (532)
Q Consensus 430 ~dpyv~v~~~~~~~-kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~ 508 (532)
.+..+.+.+.++.. +|.-. ...+..|++.|.+.+.. ...+.|.|+-+|- ...-|-.-+.|.+...
T Consensus 9 ~eV~avLklDn~~VgqT~Wk-~~s~q~WDQ~Fti~LdR---sRELEI~VywrD~-------RslCav~~lrLEd~~~--- 74 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWK-PKSNQAWDQSFTLELER---SRELEIAVYWRDW-------RSLCAVKFLKLEDERH--- 74 (98)
T ss_pred cceEEEEEEcCeEEeecccc-ccccccccceeEEEeec---ccEEEEEEEEecc-------hhhhhheeeEhhhhcc---
Confidence 56778888887665 66543 34678899999999975 3689999998863 3566767778887322
Q ss_pred eceEEEeCCCCCeEEEEEEEE
Q 009539 509 INEKYHLIDSKNGRIQIELQW 529 (532)
Q Consensus 509 ~~~~~~L~~~~~G~i~l~~~w 529 (532)
...+.-.++|.+..++.|
T Consensus 75 ---~~~~~lepqg~l~~ev~f 92 (98)
T cd08687 75 ---EVQLDMEPQLCLVAELTF 92 (98)
T ss_pred ---cceeccccccEEEEEEEe
Confidence 222333357787777665
|
PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct |
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.36 Score=43.11 Aligned_cols=71 Identities=15% Similarity=0.283 Sum_probs=52.2
Q ss_pred CCCCEEEEEE--cCee----EEEeeecCCCCCcccceEEEEec--CCCCCCeEEEEEEEccccccCCCCCceeEEEEEec
Q 009539 429 HTNPYARILF--RGEE----RKTKHVKKNRDPRWEEEFQFMLE--EPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINL 500 (532)
Q Consensus 429 ~~dpyv~v~~--~~~~----~kT~vv~~t~nP~w~e~f~f~v~--~~~~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L 500 (532)
.++-||++.+ +++. ..|+.+.-+..+.|||-.+|++. +.+.+..|.|+||+.... +....+|.++++|
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~----~~~~~vg~~~~~l 104 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGT----GKAVPFGGTTLSL 104 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCC----CCceEEEEEEEee
Confidence 4667777754 4443 26666666778899999888875 445667999999998642 3467999999999
Q ss_pred hhh
Q 009539 501 SDV 503 (532)
Q Consensus 501 ~~l 503 (532)
-+-
T Consensus 105 Fd~ 107 (159)
T cd08397 105 FNK 107 (159)
T ss_pred ECC
Confidence 875
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain | Back alignment and domain information |
|---|
Probab=92.99 E-value=1.3 Score=39.98 Aligned_cols=72 Identities=17% Similarity=0.317 Sum_probs=54.5
Q ss_pred CCCcEEEEEEeCCcCCceeeEeeC--CCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCCeeEEEEEeCccCCCC
Q 009539 274 ASDPYVKLKITEDKLPSKKTTVKH--KNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPE 349 (532)
Q Consensus 274 ~~dpyv~v~~~~~~~~~~~T~v~~--~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~ 349 (532)
+..-|+++.++++.+ .+|+... ....-.+||.|.+.+... -..|.++||.... ..+..|+++.+|+-.....
T Consensus 36 ~~~~~ikl~~N~k~V--~~T~~~~l~~dF~v~f~~~f~v~i~~~-Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~~ 109 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEV--SRTRSRPLWSDFRVHFNEIFNVQITRW-PESIKLEIYEKSG-LSDRLLAEVFVPVPGSTVH 109 (168)
T ss_pred heeEEEEEEECCEEE--EeeeeEecCCCeEEeccCEEEEEEecC-CCEEEEEEEEccC-ccceEEEEEEeeCCCCccc
Confidence 456799999998765 3555433 333456889999999774 5899999999886 6788999999998765543
|
|
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.93 Score=41.15 Aligned_cols=91 Identities=12% Similarity=0.141 Sum_probs=57.6
Q ss_pred EEEEEEeeeecCCCCCC--CCCEEEEE--EcCee---EEEeeecCCCCCcccceEEEEec--CCCCCCeEEEEEEEcccc
Q 009539 413 LLVVIVHEAQDVEGKHH--TNPYARIL--FRGEE---RKTKHVKKNRDPRWEEEFQFMLE--EPPTNDRLHVEVCSVSSR 483 (532)
Q Consensus 413 ~L~v~i~~a~~L~~~~~--~dpyv~v~--~~~~~---~kT~vv~~t~nP~w~e~f~f~v~--~~~~~~~l~v~V~d~~~~ 483 (532)
.++|+|+++.++..... ..-||++. .+++. .+|....-+.++.|||-.+|.+. +.+....|.+.||+....
T Consensus 11 ~friki~~~~~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~~ 90 (178)
T cd08399 11 KFRVKILGIDIPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKAP 90 (178)
T ss_pred CEEEEEEeecccCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEecC
Confidence 56677777764432222 33455553 34432 26666666788999998888775 445667999999986321
Q ss_pred c------c------CCCCCceeEEEEEechhh
Q 009539 484 I------G------LLHPKETLGYIDINLSDV 503 (532)
Q Consensus 484 ~------~------~~~~d~~lG~~~i~L~~l 503 (532)
. | .-..+..||.+.+.|-+-
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~ 122 (178)
T cd08399 91 ALSSKKSAESPSSESKGKHQLLYYVNLLLIDH 122 (178)
T ss_pred cccccccccccccccccccceEEEEEEEEEcC
Confidence 0 0 001367899999999874
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins | Back alignment and domain information |
|---|
Probab=92.44 E-value=1.2 Score=40.63 Aligned_cols=57 Identities=18% Similarity=0.335 Sum_probs=42.4
Q ss_pred CceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEEEEEEccCCC--CCCeeEEEEEeCcc
Q 009539 289 PSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYDWEQVG--KHDKMGMNVVPLKE 345 (532)
Q Consensus 289 ~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d~d~~~--~d~~iG~~~i~l~~ 345 (532)
..++|.+...+.+|.|+|++.+.++.. ....|.|++++..... ....+|.+.+||-+
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR 113 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence 346899999999999999999988643 3668999888754321 12578988888843
|
Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int |
| >PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain | Back alignment and domain information |
|---|
Probab=92.15 E-value=2.6 Score=38.01 Aligned_cols=96 Identities=16% Similarity=0.330 Sum_probs=66.5
Q ss_pred CCCCEEEEEEcCeeE-EEeeecC--CCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCCCCceeEEEEEechhhhc
Q 009539 429 HTNPYARILFRGEER-KTKHVKK--NRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVS 505 (532)
Q Consensus 429 ~~dpyv~v~~~~~~~-kT~vv~~--t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~ 505 (532)
...-|+++.++++.. +|+...= .-.-.|+|.|.+.+...| +.|.++||.... ..+..|+++.+++-....
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~P--esi~l~i~E~~~-----~~~~~la~v~vpvP~~~~ 108 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWP--ESIKLEIYEKSG-----LSDRLLAEVFVPVPGSTV 108 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCC--CEEEEEEEEccC-----ccceEEEEEEeeCCCCcc
Confidence 456799999999876 5554432 223347999999998754 689999998863 468999999999765443
Q ss_pred c--ce--eceEEEeCCC------------------------CCeEEEEEEEEEe
Q 009539 506 N--KR--INEKYHLIDS------------------------KNGRIQIELQWRT 531 (532)
Q Consensus 506 ~--~~--~~~~~~L~~~------------------------~~G~i~l~~~w~p 531 (532)
. .. ..++|.+... -+|+|.+++.|-.
T Consensus 109 ~~~~~~~~~~~~eFsS~~~~~~~~~~vg~~~~~~~~~~~~~tsG~l~~~~sW~~ 162 (168)
T PF15625_consen 109 HTSTDNVPLEEYEFSSDQPVHPDHEGVGSFEADGSNSTSLFTSGSLSYSVSWAV 162 (168)
T ss_pred cccccCCceEeEEEcCCceeeccceeccccccCCCCcccceeeeEEEEecEEeC
Confidence 2 11 3445554210 1599999999863
|
|
| >KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.35 Score=46.78 Aligned_cols=113 Identities=16% Similarity=0.155 Sum_probs=75.3
Q ss_pred CCceEEEEEEeeeecCCCC----C-CCCCEEEEEEcCeeE-EEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccc
Q 009539 409 AGGGLLVVIVHEAQDVEGK----H-HTNPYARILFRGEER-KTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSS 482 (532)
Q Consensus 409 ~~~g~L~v~i~~a~~L~~~----~-~~dpyv~v~~~~~~~-kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~ 482 (532)
..+|+|.+++..+|+|.-. | .-+-||.+....+.. +|.+......-.|.|.|+..+.+. +.+.+-||.++.
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~---~vl~~lvySW~p 124 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNI---EVLHYLVYSWPP 124 (442)
T ss_pred cccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccc---eeeeEEEeecCc
Confidence 3589999999999999642 2 456788888866543 666666666667999999988754 678888888864
Q ss_pred cccCCCCCceeEEEEEechhhhccceeceEEEeCCCCCeEEEEEEEE
Q 009539 483 RIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQW 529 (532)
Q Consensus 483 ~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~w 529 (532)
.. -.+=+.+| .+.+.. +.++..++.+-|.-.++|++.+++.+
T Consensus 125 q~--RHKLC~~g--~l~~~~-v~rqspd~~~Al~lePrgq~~~r~~~ 166 (442)
T KOG1452|consen 125 QR--RHKLCHLG--LLEAFV-VDRQSPDRVVALYLEPRGQPPLRLPL 166 (442)
T ss_pred hh--hccccccc--hhhhhh-hhhcCCcceeeeecccCCCCceeccc
Confidence 31 01223455 233332 23445566777776678888777654
|
|
| >PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A | Back alignment and domain information |
|---|
Probab=90.98 E-value=2.4 Score=38.82 Aligned_cols=56 Identities=21% Similarity=0.332 Sum_probs=34.9
Q ss_pred ceeeEeeCCCCCceeecEEEEEeeCCC--CCEEEEEEEEccCCC-C--CCeeEEEEEeCcc
Q 009539 290 SKKTTVKHKNLNPEWNEEYNFTVRDPE--SQAVELAVYDWEQVG-K--HDKMGMNVVPLKE 345 (532)
Q Consensus 290 ~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~v~d~d~~~-~--d~~iG~~~i~l~~ 345 (532)
...|.+...+.+|.|+|+|.+.+.... ...|.|++++...-. + +..+|.+.+||-+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 457888888999999999999887543 568999999875322 1 2689999999988
|
|
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=90.14 E-value=1.8 Score=37.86 Aligned_cols=56 Identities=27% Similarity=0.523 Sum_probs=40.6
Q ss_pred EEeeecCC-CCCcccceEEEEe--cCCCCCCeEEEEEEEccccccCCCCC----ceeEEEEEechhh
Q 009539 444 KTKHVKKN-RDPRWEEEFQFML--EEPPTNDRLHVEVCSVSSRIGLLHPK----ETLGYIDINLSDV 503 (532)
Q Consensus 444 kT~vv~~t-~nP~w~e~f~f~v--~~~~~~~~l~v~V~d~~~~~~~~~~d----~~lG~~~i~L~~l 503 (532)
.|+.+.-+ .++.|||..+|.+ .+.+.+..|.+.||..+.. ..+ ..||.+.++|-+-
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~----~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSK----KKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECS----TTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCC----CccccceeEEEEEEEEeECC
Confidence 56666666 7999999877775 4556777999999998753 223 6999999999876
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
| >cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins | Back alignment and domain information |
|---|
Probab=89.75 E-value=3.3 Score=38.07 Aligned_cols=56 Identities=14% Similarity=0.256 Sum_probs=42.2
Q ss_pred CceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEEEEEEccCC-CCC---CeeEEEEEeCc
Q 009539 289 PSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYDWEQV-GKH---DKMGMNVVPLK 344 (532)
Q Consensus 289 ~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d~d~~-~~d---~~iG~~~i~l~ 344 (532)
..++|.+...+.+|.|+|++.+.++.. ....|.|++++.... .+| ..+|.+.+||-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 346888888899999999999887643 367899999875421 122 47899888885
|
Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain | Back alignment and domain information |
|---|
Probab=89.47 E-value=1.9 Score=35.14 Aligned_cols=73 Identities=21% Similarity=0.307 Sum_probs=46.8
Q ss_pred EEEEEEEcCCCCcCCCCCCCCcEEEEEE--eCCcCC-ceeeEeeCCCCCceeecEEEEEee--C-CCCCEEEEEEEEcc
Q 009539 256 LHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKLP-SKKTTVKHKNLNPEWNEEYNFTVR--D-PESQAVELAVYDWE 328 (532)
Q Consensus 256 L~V~v~~A~~L~~~d~~g~~dpyv~v~~--~~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~--~-~~~~~L~v~v~d~d 328 (532)
+.+++..+++..-......++-||.+.+ +++... ...|+.+.-...+.|||...|++. + +....|.+.+|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 5566666666655443233578888865 333321 225655555666899999998764 2 33678999999865
|
Outlier of C2 family. |
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=88.79 E-value=2 Score=38.90 Aligned_cols=93 Identities=25% Similarity=0.320 Sum_probs=61.7
Q ss_pred ceEEEEEEeeeecCCCC---CCCCCEEEEE--EcCeeE----EEeeec----CCCCCcccceEEEEec--CCCCCCeEEE
Q 009539 411 GGLLVVIVHEAQDVEGK---HHTNPYARIL--FRGEER----KTKHVK----KNRDPRWEEEFQFMLE--EPPTNDRLHV 475 (532)
Q Consensus 411 ~g~L~v~i~~a~~L~~~---~~~dpyv~v~--~~~~~~----kT~vv~----~t~nP~w~e~f~f~v~--~~~~~~~l~v 475 (532)
...+.|+|.++.+++.. ...|-|+++. .|++.. .|+... -...+.|||-.+|.+. +.+.+..|.+
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i 86 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL 86 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence 45678889999999864 2467777774 455432 454322 2346779998888764 4455669999
Q ss_pred EEEEccccc-c----CCCCCceeEEEEEechhh
Q 009539 476 EVCSVSSRI-G----LLHPKETLGYIDINLSDV 503 (532)
Q Consensus 476 ~V~d~~~~~-~----~~~~d~~lG~~~i~L~~l 503 (532)
.+|+..... + .-..+..||.+.++|-+-
T Consensus 87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 999876420 0 000357999999999874
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
| >cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins | Back alignment and domain information |
|---|
Probab=87.88 E-value=10 Score=34.74 Aligned_cols=56 Identities=23% Similarity=0.345 Sum_probs=41.3
Q ss_pred ceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEEEEEEccC--CC-------CCCeeEEEEEeCcc
Q 009539 290 SKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYDWEQ--VG-------KHDKMGMNVVPLKE 345 (532)
Q Consensus 290 ~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d~d~--~~-------~d~~iG~~~i~l~~ 345 (532)
...|.+...+.+|.|+|++.+.+.-. ....|.|+.|+.+- .. ....+|-+.+||-.
T Consensus 57 ~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 57 SAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred EEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 45788888899999999999887643 35689999998651 11 13468888888765
|
Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande |
| >PTZ00447 apical membrane antigen 1-like protein; Provisional | Back alignment and domain information |
|---|
Probab=84.05 E-value=12 Score=37.17 Aligned_cols=109 Identities=17% Similarity=0.273 Sum_probs=76.4
Q ss_pred CceEEEEEEeeeecCCCCCCCCCEEEEEEcCeeEEEeeecCCCCC--cccceEEEEecCCCCCCeEEEEEEEccccccCC
Q 009539 410 GGGLLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDP--RWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 487 (532)
Q Consensus 410 ~~g~L~v~i~~a~~L~~~~~~dpyv~v~~~~~~~kT~vv~~t~nP--~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~ 487 (532)
..-.|-|.|++..++... ..-|+.+..+....+|..+.-+..- .-++.....++. .+..|.+.|+-.. +
T Consensus 56 RkF~LLVeI~EI~~i~k~--khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQ--cDnTLkI~lfKKk-----L 126 (508)
T PTZ00447 56 RTFYLLVKINEIFNINKY--KHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQ--CDETLRVDLFTTK-----L 126 (508)
T ss_pred ceeeEEEEehhhhccccc--eeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeee--cCceEEEEEEecc-----c
Confidence 345677888888777754 5789999999988888665533322 234556666654 3568999999775 5
Q ss_pred CCCceeEEEEEechh-hhccc-eeceEEEeCCCC--CeEEEEEE
Q 009539 488 HPKETLGYIDINLSD-VVSNK-RINEKYHLIDSK--NGRIQIEL 527 (532)
Q Consensus 488 ~~d~~lG~~~i~L~~-l~~~~-~~~~~~~L~~~~--~G~i~l~~ 527 (532)
.+..-||.+.++.+. ++++. ...+||-+...+ .++|+|++
T Consensus 127 vkk~hIgdI~InIn~dIIdk~FPKnkWy~c~kDGq~~cRIqLSF 170 (508)
T PTZ00447 127 TKKVHIGQIKIDINASVISKSFPKNEWFVCFKDGQEICKVQMSF 170 (508)
T ss_pred cceeEEEEEEecccHHHHhccCCccceEEEecCCceeeeEEEEe
Confidence 678899999999875 44443 567999996544 47777765
|
|
| >PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function | Back alignment and domain information |
|---|
Probab=82.36 E-value=8.7 Score=31.74 Aligned_cols=93 Identities=19% Similarity=0.265 Sum_probs=50.5
Q ss_pred EEEEEEcC-eeEEEeeecCCCCCcccceEEEEecCCC------CCCeEEEEEEEccccccCCCCCceeEEEEEechhhhc
Q 009539 433 YARILFRG-EERKTKHVKKNRDPRWEEEFQFMLEEPP------TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVS 505 (532)
Q Consensus 433 yv~v~~~~-~~~kT~vv~~t~nP~w~e~f~f~v~~~~------~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~ 505 (532)
||.+.+-. +.+.|.++. ..+|.+|-+-.|.|.... ....+.|++...-. .....+|.+.++|.++++
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-----~d~~tla~~~i~l~~ll~ 75 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-----SDFETLAAGQISLRPLLE 75 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-----S-EEEEEEEEE--SHHHH
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-----CCeEEEEEEEeechhhhc
Confidence 44444433 345666665 899999998888887531 12478999988752 236799999999999997
Q ss_pred cc--eeceEEEeCCCC---CeEEEEEEEEEe
Q 009539 506 NK--RINEKYHLIDSK---NGRIQIELQWRT 531 (532)
Q Consensus 506 ~~--~~~~~~~L~~~~---~G~i~l~~~w~p 531 (532)
+. .+...-.|.+.. -|.++..++.+.
T Consensus 76 ~~~~~i~~~~~l~g~~~~~~g~l~y~~rl~~ 106 (107)
T PF11618_consen 76 SNGERIHGSATLVGVSGEDFGTLEYWIRLRV 106 (107)
T ss_dssp --S--EEEEEEE-BSSS-TSEEEEEEEEEEE
T ss_pred CCCceEEEEEEEeccCCCeEEEEEEEEEecC
Confidence 53 466677775543 488888877664
|
It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A. |
| >PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A | Back alignment and domain information |
|---|
Probab=80.83 E-value=7.9 Score=35.40 Aligned_cols=60 Identities=18% Similarity=0.275 Sum_probs=34.7
Q ss_pred eEEEeeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEccccccCCCCCceeEEEEEechh
Q 009539 442 ERKTKHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKETLGYIDINLSD 502 (532)
Q Consensus 442 ~~kT~vv~~t~nP~w~e~f~f~v~~~~~~-~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~ 502 (532)
...|.+..++.+|.|+|+|.+.++..... ..|.+++++-....+ -..+..+|.+-++|-+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~-~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKES-KEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSS-S-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccc-cCccceeEEEEEEeee
Confidence 35888899999999999999999865322 378888888754311 0112799999999987
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 532 | ||||
| 2nsq_A | 155 | Crystal Structure Of The C2 Domain Of The Human E3 | 7e-14 | ||
| 3m7f_B | 176 | Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX | 1e-12 | ||
| 3b7y_A | 153 | Crystal Structure Of The C2 Domain Of The E3 Ubiqui | 3e-12 | ||
| 2ep6_A | 133 | Solution Structure Of The Second C2 Domain From Hum | 6e-12 | ||
| 3hn8_A | 296 | Crystal Structure Of Synaptotagmin Length = 296 | 2e-11 | ||
| 1dqv_A | 296 | Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt | 2e-11 | ||
| 2d8k_A | 141 | Solution Structure Of The First C2 Domain Of Synapt | 2e-10 | ||
| 1rsy_A | 152 | Structure Of The First C2-domain Of Synaptotagmin I | 6e-10 | ||
| 3f04_A | 143 | Crystal Structure Of Synaptotagmin I C2a Domain Len | 7e-10 | ||
| 3f00_A | 143 | Crystal Structure Of Synaptotagmin I C2a Domain Wit | 7e-10 | ||
| 1byn_A | 128 | Solution Structure Of The Calcium-Bound First C2-Do | 1e-09 | ||
| 2r83_A | 284 | Crystal Structure Analysis Of Human Synaptotagmin 1 | 1e-09 | ||
| 2uzp_A | 144 | Crystal Structure Of The C2 Domain Of Human Protein | 9e-09 | ||
| 3gpe_A | 137 | Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain | 1e-08 | ||
| 1dsy_A | 139 | C2 Domain From Protein Kinase C (Alpha) Complexed W | 1e-08 | ||
| 3pfq_A | 674 | Crystal Structure And Allosteric Activation Of Prot | 2e-08 | ||
| 1a25_A | 149 | C2 Domain From Protein Kinase C (Beta) Length = 149 | 4e-08 | ||
| 4dnl_A | 140 | Crystal Structure Of A C2 Domain Of A Protein Kinas | 6e-08 | ||
| 2cm5_A | 166 | Crystal Structure Of The C2b Domain Of Rabphilin Le | 6e-08 | ||
| 2cm6_A | 166 | Crystal Structure Of The C2b Domain Of Rabphilin3a | 8e-08 | ||
| 3rpb_A | 140 | The C2b-Domain Of Rabphilin: Structural Variations | 9e-08 | ||
| 1tjm_A | 159 | Crystallographic Identification Of Sr2+ Coordinatio | 4e-07 | ||
| 2lha_A | 151 | Solution Structure Of C2b With Ip6 Length = 151 | 5e-07 | ||
| 1k5w_A | 152 | Three-Dimensional Structure Of The Synaptotagmin 1 | 5e-07 | ||
| 1wfj_A | 136 | C2 Domain-Containing Protein From Putative Elicitor | 7e-06 | ||
| 3jzy_A | 510 | Crystal Structure Of Human Intersectin 2 C2 Domain | 1e-05 | ||
| 3pyc_A | 132 | Crystal Structure Of Human Smurf1 C2 Domain Length | 2e-05 | ||
| 1w15_A | 153 | Rat Synaptotagmin 4 C2b Domain In The Presence Of C | 2e-05 | ||
| 3kwt_A | 148 | Munc13-1 C2b-Domain, Calcium-Free Length = 148 | 2e-05 | ||
| 2jqz_A | 131 | Solution Structure Of The C2 Domain Of Human Smurf2 | 2e-05 | ||
| 2chd_A | 142 | Crystal Structure Of The C2a Domain Of Rabphilin-3a | 3e-05 | ||
| 2k3h_A | 140 | Structural Determinants For Ca2+ And Pip2 Binding B | 4e-05 | ||
| 2enp_A | 147 | Solution Structure Of The First C2 Domain From Huma | 4e-05 | ||
| 3n5a_A | 138 | Synaptotagmin-7, C2b-Domain, Calcium Bound Length = | 3e-04 |
| >pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155 | Back alignment and structure |
|
| >pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX Length = 176 | Back alignment and structure |
|
| >pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin- Protein Ligase Nedd4 Length = 153 | Back alignment and structure |
|
| >pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133 | Back alignment and structure |
|
| >pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296 | Back alignment and structure |
|
| >pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296 | Back alignment and structure |
|
| >pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141 | Back alignment and structure |
|
| >pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A Novel Ca2+(slash)phospholipid Binding Fold Length = 152 | Back alignment and structure |
|
| >pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain Length = 143 | Back alignment and structure |
|
| >pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With Cu(Ii) Length = 143 | Back alignment and structure |
|
| >pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of Synaptotagmin I Length = 128 | Back alignment and structure |
|
| >pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284 | Back alignment and structure |
|
| >pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase C Gamma. Length = 144 | Back alignment and structure |
|
| >pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137 | Back alignment and structure |
|
| >pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139 | Back alignment and structure |
|
| >pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674 | Back alignment and structure |
|
| >pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta) Length = 149 | Back alignment and structure |
|
| >pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution Length = 140 | Back alignment and structure |
|
| >pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin Length = 166 | Back alignment and structure |
|
| >pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a Length = 166 | Back alignment and structure |
|
| >pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A Janus-Faced Domain Length = 140 | Back alignment and structure |
|
| >pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site In Synaptotagmin I C2b Domain Length = 159 | Back alignment and structure |
|
| >pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6 Length = 151 | Back alignment and structure |
|
| >pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b- Domain: Synaptotagmin 1 As A Phospholipid Binding Machine Length = 152 | Back alignment and structure |
|
| >pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor- Responsive Gene Length = 136 | Back alignment and structure |
|
| >pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain Length = 510 | Back alignment and structure |
|
| >pdb|3PYC|A Chain A, Crystal Structure Of Human Smurf1 C2 Domain Length = 132 | Back alignment and structure |
|
| >pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium Length = 153 | Back alignment and structure |
|
| >pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148 | Back alignment and structure |
|
| >pdb|2JQZ|A Chain A, Solution Structure Of The C2 Domain Of Human Smurf2 Length = 131 | Back alignment and structure |
|
| >pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a Length = 142 | Back alignment and structure |
|
| >pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The C2a Domain Of Rabphilin-3a Length = 140 | Back alignment and structure |
|
| >pdb|2ENP|A Chain A, Solution Structure Of The First C2 Domain From Human BK Protein Length = 147 | Back alignment and structure |
|
| >pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound Length = 138 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 161 bits (410), Expect = 5e-46
Identities = 59/264 (22%), Positives = 107/264 (40%), Gaps = 44/264 (16%)
Query: 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEY 308
Y L V +++A L D+ G SDPYVK+ + DK +T V K LNP +NE++
Sbjct: 14 YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQF 73
Query: 309 NFTV--RDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLND 366
F V + + + +AVYD+++ KHD +G VP+ + + + DL
Sbjct: 74 TFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEK--- 130
Query: 367 GQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQD--- 423
+ ++ G + Y P G L V++ EA++
Sbjct: 131 -EEQEKLGDICFSLRYVP-------------------------TAGKLTVVILEAKNLKK 164
Query: 424 VEGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDR-LHVEV 477
++ ++PY +I R +++KT K +P + E F F + + V V
Sbjct: 165 MDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTV 224
Query: 478 CSVSSRIGLLHPKETLGYIDINLS 501
+ + +G + + +
Sbjct: 225 LD----YDKIGKNDAIGKVFVGYN 244
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 94.1 bits (234), Expect = 1e-21
Identities = 41/115 (35%), Positives = 65/115 (56%), Gaps = 4/115 (3%)
Query: 239 EVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVK 296
++ + S Y G L V +++A NLKK D+ G SDPYVK+ + ++ +L KKTT+K
Sbjct: 135 KLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIK 194
Query: 297 HKNLNPEWNEEYNFTVRDPESQAV--ELAVYDWEQVGKHDKMGMNVVPLKELTPE 349
LNP +NE ++F V + Q V + V D++++GK+D +G V E
Sbjct: 195 KNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAE 249
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 1e-44
Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 10/144 (6%)
Query: 246 SKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWN 305
S P G L V +V A L+ D L DPYV+L K + PEWN
Sbjct: 2 SSGSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQ--KSNVAEGMGTTPEWN 59
Query: 306 EEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLN 365
E + FTV + ++ ++ ++D + + D +G +PL+ + E + N
Sbjct: 60 ETFIFTVSEGTTE-LKAKIFDKDVGTEDDAVGEATIPLEPVFVEGS-------IPPTAYN 111
Query: 366 DGQNEKSRGQLVVEFIYKPFKEED 389
++E+ +G++ V +KP
Sbjct: 112 VVKDEEYKGEIWVALSFKPSGPSS 135
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 3e-12
Identities = 25/128 (19%), Positives = 49/128 (38%), Gaps = 19/128 (14%)
Query: 412 GLLVVIVHEAQDVEGKHHT---NPYARILFRGEERKTKHVK-KNRDPRWEEEFQFMLEEP 467
G L V++ A+ +E +PY ++ R +++K+ + P W E F F + E
Sbjct: 10 GTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG 69
Query: 468 PTNDRLHVEVC---SVSSRIGLLHPKETLGYIDINLSDVVSNKRI-NEKYHLIDSKN--G 521
L ++ + + +G I L V I Y+++ + G
Sbjct: 70 --TTELKAKIFDKDVGTE-------DDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKG 120
Query: 522 RIQIELQW 529
I + L +
Sbjct: 121 EIWVALSF 128
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 1e-44
Identities = 49/170 (28%), Positives = 78/170 (45%), Gaps = 10/170 (5%)
Query: 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKI---TEDKLPSKKTTVKHKNLNPEWN 305
+ ++ VKV+ + L KKD+LGASDPYV++ + L S +T K+LNP+WN
Sbjct: 3 HNDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWN 62
Query: 306 EEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLN 365
EE F V P+ + V+D ++ + D +G VPL L E P ++ K+ L+
Sbjct: 63 EEILFRV-LPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLH 121
Query: 366 -DGQNEKSRGQLVVEFIYKPFKEE-----DLPKSFEESQTVQKAPENTPA 409
+ +G L ++ Y P D + E V P+
Sbjct: 122 PRSHKSRVKGYLRLKMTYLPKNGSEDENADQAEELEPGWVVLDQPDAATH 171
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 4e-07
Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 15/109 (13%)
Query: 412 GLLVVIVHEAQDVEGKHHTN---PYARILFRGEER------KTKHVKKNRDPRWEEEFQF 462
++ V V + K PY R+ +TK +KK+ +P+W EE F
Sbjct: 8 RVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILF 67
Query: 463 MLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINE 511
+ P R+ EV L + LG +D+ L + + E
Sbjct: 68 RV--LPQRHRILFEVFDE----NRLTRDDFLGQVDVPLYPLPTENPRME 110
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 152 bits (385), Expect = 4e-44
Identities = 45/140 (32%), Positives = 72/140 (51%), Gaps = 5/140 (3%)
Query: 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK---LPSKKTTVKHKNLNPEWN 305
I+ V+V+ + L KKD+LGASDPYV++ + + L S +T K+LNP+WN
Sbjct: 15 DEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWN 74
Query: 306 EEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLN 365
EE F V P+ + V+D ++ + D +G VPL L E P ++ K+ L+
Sbjct: 75 EEILFRV-HPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLH 133
Query: 366 D-GQNEKSRGQLVVEFIYKP 384
+ +G L ++ Y P
Sbjct: 134 PRSHKSRVKGYLRLKMTYLP 153
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 1e-07
Identities = 26/143 (18%), Positives = 51/143 (35%), Gaps = 32/143 (22%)
Query: 411 GGLLVVIVHEAQDVEGKHHTN---PYARILFRGEER------KTKHVKKNRDPRWEEEFQ 461
++ V V + K PY R+ +TK +KK+ +P+W EE
Sbjct: 19 SRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEIL 78
Query: 462 FMLEEPPTNDRLHVEVC---SVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS 518
F + P RL EV ++ + LG +D+ L + + E+ +
Sbjct: 79 FRV--HPQQHRLLFEVFDENRLTR-------DDFLGQVDVPLYPLPTENPRLERPYTFKD 129
Query: 519 KN-----------GRIQIELQWR 530
G +++++ +
Sbjct: 130 FVLHPRSHKSRVKGYLRLKMTYL 152
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 2e-41
Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 10/138 (7%)
Query: 254 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVR 313
G+L V V A N+ K G DP V + ++K KKT LNP WNE F +R
Sbjct: 7 GMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEK---KKTKKVDNELNPVWNEILEFDLR 62
Query: 314 DPE---SQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNE 370
S ++ + V D+E +G++ +G V LK+LT ++ L+ L + + +
Sbjct: 63 GIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLIS---LLNEKGQ 119
Query: 371 KSRGQLVVEFIYKPFKEE 388
+ + + Y P
Sbjct: 120 DTGATIDLVIGYDPPSGP 137
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 3e-14
Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 21/137 (15%)
Query: 407 TPAGGGLLVVIVHEAQDVEGKHH--TNPYARILFRGEERKTKHVKKNRDPRWEEEFQFML 464
+ G+L VIV A ++ +P ++F+ E++KTK V +P W E +F L
Sbjct: 2 SSGSSGMLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDL 61
Query: 465 EEPP--TNDRLHVEVC---SVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK 519
P + L + V ++ + +G + L D+ ++ + Y LI
Sbjct: 62 RGIPLDFSSSLGIIVKDFETIGQ-------NKLIGTATVALKDLTGDQSRSLPYKLISLL 114
Query: 520 N-------GRIQIELQW 529
N I + + +
Sbjct: 115 NEKGQDTGATIDLVIGY 131
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 8e-40
Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 11/137 (8%)
Query: 246 SKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWN 305
S + VGIL VKV+KA +L D G SDP+ L++ D+L +T +KNLNPEWN
Sbjct: 5 SSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRL---QTHTVYKNLNPEWN 61
Query: 306 EEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLN 365
+ + F ++D +E+ V+D + D +G +PL + +P+ LKN DL
Sbjct: 62 KVFTFPIKDIH-DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYV---LKNKDLE 117
Query: 366 DGQNEKSRGQLVVEFIY 382
+G + +E
Sbjct: 118 Q----AFKGVIYLEMDL 130
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 8e-12
Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 18/127 (14%)
Query: 412 GLLVVIVHEAQDVEGKHHT---NPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPP 468
G+L V V +A D+ + +P+ + + +T V KN +P W + F F +++
Sbjct: 13 GILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDI- 71
Query: 469 TNDRLHVEVC---SVSSRIGLLHPKETLGYIDINLSDVVSNKR---INEKYHLIDSKNGR 522
+D L V V + LG + I L + + + + L + G
Sbjct: 72 -HDVLEVTVFDEDGDKP-------PDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGV 123
Query: 523 IQIELQW 529
I +E+
Sbjct: 124 IYLEMDL 130
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 142 bits (359), Expect = 1e-38
Identities = 65/265 (24%), Positives = 110/265 (41%), Gaps = 45/265 (16%)
Query: 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEY 308
Y L V++++A++L KD G SDPYVK+ + D+ +T V K LNP +NE +
Sbjct: 15 YLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETF 74
Query: 309 NFTV--RDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLND 366
F+V + + + +VYD+++ +HD +G V+ E+P + L D+ +
Sbjct: 75 QFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPL----WRDILE 130
Query: 367 GQNEK-SRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVE 425
G +EK G+L Y P GLL V + +A +++
Sbjct: 131 GGSEKADLGELNFSLCYLPT-------------------------AGLLTVTIIKASNLK 165
Query: 426 GKHHT---NPYARILF-----RGEERKTKHVKKNRDPRWEEEFQFML-EEPPTNDRLHVE 476
T +PY + R ++RKT K +P + E F + E N L +
Sbjct: 166 AMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIA 225
Query: 477 VCSVSSRIGLLHPKETLGYIDINLS 501
V + E +G +
Sbjct: 226 VVD----YDCIGHNEVIGVCRVGPE 246
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 97.6 bits (243), Expect = 8e-23
Identities = 37/106 (34%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNE 306
Y G+L V ++KA NLK DL G SDPYVK + + +L +KT++K LNP +NE
Sbjct: 147 YLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNE 206
Query: 307 EYNFTVR--DPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEE 350
F V E+ + +AV D++ +G ++ +G+ V + P
Sbjct: 207 ALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHG 252
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 2e-37
Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 14/128 (10%)
Query: 256 LHVKVVKAMNLKK---KDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTV 312
V V++A + K D+L DPYV+L I+ K+T + ++NP WNE + F +
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64
Query: 313 RDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKS 372
+ +E+ + D + +G + + E N+ +
Sbjct: 65 DPNQENVLEITLMDAN-YVMDETLGTATFTVSSMKVGEKKEVPFIF----------NQVT 113
Query: 373 RGQLVVEF 380
L +
Sbjct: 114 EMVLEMSL 121
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 1e-12
Identities = 23/134 (17%), Positives = 47/134 (35%), Gaps = 21/134 (15%)
Query: 411 GGLLVVIVHEAQDVEGKHHTN------PYARILFRG---EERKTKHVKKNRDPRWEEEFQ 461
V+V A V + PY + ++T+H + +P W E F+
Sbjct: 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFE 61
Query: 462 FMLEEPPTNDRLHVEVC---SVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS 518
F+L+ N L + + V ETLG +S + ++ +
Sbjct: 62 FILDPNQEN-VLEITLMDANYVMD--------ETLGTATFTVSSMKVGEKKEVPFIFNQV 112
Query: 519 KNGRIQIELQWRTA 532
+++ L+ ++
Sbjct: 113 TEMVLEMSLEVASS 126
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 4e-36
Identities = 26/131 (19%), Positives = 57/131 (43%), Gaps = 9/131 (6%)
Query: 403 APENTPAGGGL-LVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPR-WEEEF 460
+ P G + L+V + ++ G+ + A++ FRG+ ++ ++ D ++E F
Sbjct: 11 SSGLVPRGSHMALIVHLKTVSELRGRA--DRIAKVTFRGQSFYSRVLENCEDVADFDETF 68
Query: 461 QFMLEEPP-TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK 519
++ + N+ L +++ + S + + +G + L VV R+ LID
Sbjct: 69 RWPVASSIDRNEVLEIQIFNYSK----VFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDN 124
Query: 520 NGRIQIELQWR 530
N I+ L
Sbjct: 125 NAIIKTSLSME 135
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144 | Back alignment and structure |
|---|
Score = 64.2 bits (156), Expect = 1e-12
Identities = 22/132 (16%), Positives = 53/132 (40%), Gaps = 17/132 (12%)
Query: 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNP-EWNEEYNFTVRD 314
L V + L+ + +D K+ + V + +++E + + V
Sbjct: 23 LIVHLKTVSELRGR-----ADRIAKVTFRGQS---FYSRVLENCEDVADFDETFRWPVAS 74
Query: 315 P--ESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKS 372
++ +E+ ++++ +V + +G + L+++ EE V+ D L D N
Sbjct: 75 SIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVV-EENRVEVSD-----TLIDDNNAII 128
Query: 373 RGQLVVEFIYKP 384
+ L +E Y+
Sbjct: 129 KTSLSMEVRYQA 140
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 4e-33
Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 10/129 (7%)
Query: 256 LHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP 315
+ + V+ A NL KKD DP+ K+ + T L+P+WN+ Y+ V
Sbjct: 7 IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQ-CHSTDTVKNTLDPKWNQHYDLYVGKT 65
Query: 316 ESQAVELAVYDWEQVGKHDK---MGMNVVPLKELTP-EEPSVKTLDLLKNMDLNDGQNEK 371
+S + V++ +++ K +G + ++ ++ + LDL K ++ +D +
Sbjct: 66 DSITIS--VWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCK-LNPSD--TDA 120
Query: 372 SRGQLVVEF 380
RGQ+VV
Sbjct: 121 VRGQIVVSL 129
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 4e-10
Identities = 25/140 (17%), Positives = 51/140 (36%), Gaps = 27/140 (19%)
Query: 409 AGGGLLVVIVHEAQ-----DVEGKHHTNPYARILFRGEE--RKTKHVKKNRDPRWEEEFQ 461
+ + + V A+ D +P+A+I+ G T VK DP+W + +
Sbjct: 2 SEFIKIRLTVLCAKNLAKKDFFRL--PDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYD 59
Query: 462 FMLEEPPTNDRLHVEVCS---VSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS 518
+ + D + + V + + + G LG + + + + K + +
Sbjct: 60 LYVGK---TDSITISVWNHKKIHKKQG----AGFLGCVRLLSNAISRLKDTGYQRLDLCK 112
Query: 519 KN--------GRIQIELQWR 530
N G+I + LQ R
Sbjct: 113 LNPSDTDAVRGQIVVSLQTR 132
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 8e-33
Identities = 38/113 (33%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEY 308
Y L VK++KA L KD G SDP+VK+ + DK +T VK KNLNP WNE +
Sbjct: 21 YNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETF 80
Query: 309 NF---TVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 358
F + + L V D+++ ++D +G +PL ++ + DL
Sbjct: 81 LFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDL 133
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 2e-08
Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 12/112 (10%)
Query: 412 GLLVVIVHEAQD---VEGKHHTNPYARILF---RGEERKTKHVKKNRDPRWEEEFQFML- 464
L V + +AQ+ + ++P+ +I + + +TK +KN +P W E F F
Sbjct: 26 STLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGF 85
Query: 465 -EEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHL 515
E L+++V + +G + I L+ V + L
Sbjct: 86 PYEKVVQRILYLQVLDY----DRFSRNDPIGEVSIPLNKVDLTQMQTFWKDL 133
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 7e-32
Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Query: 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEY 308
Y L V +++A L D+ G SDPYVK+ + DK +T V K LNP +NE++
Sbjct: 29 YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQF 88
Query: 309 NFTVR--DPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 359
F V + + + +AVYD+++ KHD +G VP+ + + + DL
Sbjct: 89 TFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 1e-09
Identities = 18/114 (15%), Positives = 45/114 (39%), Gaps = 11/114 (9%)
Query: 412 GLLVVIVHEAQD---VEGKHHTNPYARILF---RGEERKTKHVKKNRDPRWEEEFQFMLE 465
L+V + +A + ++ ++PY ++ + ++ +TK +K +P + E+F F +
Sbjct: 34 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 93
Query: 466 EPPTNDR-LHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS 518
+ L + V + +G + ++ V E L +
Sbjct: 94 YSELGGKTLVMAVYDFDR----FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA 143
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 2e-31
Identities = 24/153 (15%), Positives = 55/153 (35%), Gaps = 8/153 (5%)
Query: 229 ANMYLWPKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKL 288
N+Y + L + L + V+ A + K PYV++ +
Sbjct: 12 ENLYFQGMSDSGSQLGSMGSLTMK-SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQS- 69
Query: 289 PSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTP 348
KKT + +P+W + V + V+ + + +G + + E
Sbjct: 70 --KKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKSDVLLGTAALDIYET-L 124
Query: 349 EEPSVKTLDLLKNMDL-NDGQNEKSRGQLVVEF 380
+ ++K +++ + L D + ++ G L +
Sbjct: 125 KSNNMKLEEVVVTLQLGGDKEPTETIGDLSICL 157
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 5e-16
Identities = 25/146 (17%), Positives = 49/146 (33%), Gaps = 20/146 (13%)
Query: 397 SQTVQKAPENTPAGGGLLVVIVHEAQDVEGKH---HTNPYARILFRGEERKTKHVKKNRD 453
Q + L + V A+ E K +PY + G+ +KT+
Sbjct: 21 DSGSQLGSMGSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNS 80
Query: 454 PRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVS--NKRINE 511
P+W++ ++ +LH V S + L LG +++ + + N ++ E
Sbjct: 81 PKWKQPLTVIVTP---VSKLHFRVWSHQT----LKSDVLLGTAALDIYETLKSNNMKLEE 133
Query: 512 KYHLIDSKN--------GRIQIELQW 529
+ G + I L
Sbjct: 134 VVVTLQLGGDKEPTETIGDLSICLDG 159
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 3e-31
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 5/119 (4%)
Query: 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNE 306
Y + L +++A LK D G +DPYVKL + K +T NP WNE
Sbjct: 24 YDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNE 83
Query: 307 EYNF---TVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNM 362
+ T D + + + ++V D ++ G ++ +G LK+L + + L + +
Sbjct: 84 TLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLERVI 142
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 9e-09
Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 14/115 (12%)
Query: 411 GGLLVVIVHEAQD---VEGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQF 462
L + A+ ++ +PY ++ + + +TK ++ R+P W E Q+
Sbjct: 28 NSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQY 87
Query: 463 ML--EEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHL 515
EE L + VC E +G +L + +N+R N L
Sbjct: 88 HGITEEDMQRKTLRISVCDE----DKFGHNEFIGETRFSLKKLKANQRKNFNICL 138
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 1e-30
Identities = 32/142 (22%), Positives = 58/142 (40%), Gaps = 22/142 (15%)
Query: 250 RRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYN 309
+ + + VV A L+ KD G+SDPYV +++ + K K+T + NLNP W E ++
Sbjct: 13 SKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTK---KRTKTIYGNLNPVWEENFH 69
Query: 310 FTVRDPESQAVELAVYDW-----------EQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 358
F + S +++ V D + D +G ++ ++ L+ E LD
Sbjct: 70 FECHNS-SDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVWYNLD- 127
Query: 359 LKNMDLNDGQNEKSRGQLVVEF 380
G + +
Sbjct: 128 ------KRTDKSAVSGAIRLHI 143
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 2e-13
Identities = 30/146 (20%), Positives = 55/146 (37%), Gaps = 15/146 (10%)
Query: 396 ESQTVQKAPENTPAGGGLLVVIVHEAQDVEGKHHT---NPYARILFRGEERKTKHVKKNR 452
E Q + T + + V AQ ++ K T +PY + +++TK + N
Sbjct: 1 EFAVKQSVLDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNL 60
Query: 453 DPRWEEEFQFMLEEPPTNDRLHVEV-------CSVSSRIGLLHPKETLGYIDINLSDVVS 505
+P WEE F F +DR+ V V S + + LG I + +
Sbjct: 61 NPVWEENFHFECHNS--SDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSG 118
Query: 506 NKRIN---EKYHLIDSKNGRIQIELQ 528
+ +K + +G I++ +
Sbjct: 119 EMDVWYNLDKRTDKSAVSGAIRLHIS 144
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 3e-30
Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Query: 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEY 308
Y L V +++A L D+ G SDPYVK+ + DK +T V K LNP +NE++
Sbjct: 37 YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQF 96
Query: 309 NFTVR--DPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 359
F V + + + +AVYD+++ KHD +G VP+ + + + DL
Sbjct: 97 TFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 149
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 2e-10
Identities = 24/180 (13%), Positives = 60/180 (33%), Gaps = 36/180 (20%)
Query: 347 TPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPEN 406
+P L ++ + + E+ G+L Y +
Sbjct: 2 SPGISGGGGGILDSMVEKEEPKEEEKLGKLQYSLDYDFQNNQ------------------ 43
Query: 407 TPAGGGLLVVIVHEAQD---VEGKHHTNPYARILF---RGEERKTKHVKKNRDPRWEEEF 460
L+V + +A + ++ ++PY ++ + ++ +TK +K +P + E+F
Sbjct: 44 -------LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQF 96
Query: 461 QFMLEEPPTNDR-LHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK 519
F + + L + V + +G + ++ V E L ++
Sbjct: 97 TFKVPYSELGGKTLVMAVYDFDR----FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAE 152
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 119 bits (298), Expect = 1e-28
Identities = 29/153 (18%), Positives = 58/153 (37%), Gaps = 7/153 (4%)
Query: 243 LDPSKAYRR---PVGILHVKVVKAMNLKKK---DLLGASDPYVKLKITEDKLPSKKTTVK 296
+DP + V V++A + K D+L DPYV+L I+ K+T
Sbjct: 4 IDPYQHIIVEHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHF 63
Query: 297 HKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTL 356
+ ++NP WNE + F + + +E+ + D V + +G + + E
Sbjct: 64 NNDINPVWNETFEFILDPNQENVLEITLMDANYV-MDETLGTATFTVSSMKVGEKKEVPF 122
Query: 357 DLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEED 389
+ ++ + + + F +E
Sbjct: 123 IFNQVTEMVLEMSLEVCSCPDLRFSMALCDQEK 155
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 1e-06
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 10/77 (12%)
Query: 412 GLLVVIVHEAQDVEGKHH------TNPYARILFRG---EERKTKHVKKNRDPRWEEEFQF 462
V+V A V +PY + ++T+H + +P W E F+F
Sbjct: 18 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 77
Query: 463 MLEEPPTNDRLHVEVCS 479
+L+ N L + +
Sbjct: 78 ILDPNQEN-VLEITLMD 93
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 3e-28
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 254 GILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFT 311
+L V V A NL D G SDPYVKLK+ D +KT +LNPEWNE + F
Sbjct: 31 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 90
Query: 312 VRDPESQAV-ELAVYDWEQVGKHDKMGMNVVPLKELTPEEPS 352
+++ + + ++DW+ ++D MG + EL
Sbjct: 91 LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVD 132
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 4e-10
Identities = 27/124 (21%), Positives = 61/124 (49%), Gaps = 17/124 (13%)
Query: 411 GGLLVVIVHEAQD---VEGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQF 462
+L+V+V +A++ ++ ++PY ++ ++KTK +K + +P W E F+F
Sbjct: 30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRF 89
Query: 463 MLEEPPTNDRLHVEVCS--VSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKN 520
L+E + RL VE+ ++SR + +G + +S+ + ++ + L+ +
Sbjct: 90 QLKESDKDRRLSVEIWDWDLTSR------NDFMGSLSFGISE-LQKAGVDGWFKLLSQEE 142
Query: 521 GRIQ 524
G
Sbjct: 143 GEYF 146
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 6e-27
Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 14/134 (10%)
Query: 240 VPILDPSKAYRRPVGILHVKVVKAMNLKKKDL----------LGASDPYVKLKITEDKLP 289
VP S + G L V++ +A+ L+ DPY+ + + D++
Sbjct: 15 VPRGSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSV--DQVR 72
Query: 290 SKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPE 349
+T+ K K P +NEE+ V + +ELAV+ +G + + +EL
Sbjct: 73 VGQTSTKQKTNKPTYNEEFCANV--TDGGHLELAVFHETPLGYDHFVANCTLQFQELLRT 130
Query: 350 EPSVKTLDLLKNMD 363
+ T + +++
Sbjct: 131 TGASDTFEGWVDLE 144
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 52.3 bits (125), Expect = 3e-08
Identities = 19/134 (14%), Positives = 44/134 (32%), Gaps = 23/134 (17%)
Query: 412 GLLVVIVHEAQD-------------VEGKHHTNPYARILFRGEE-RKTKHVKKNRDPRWE 457
G L V + EA +G +PY + +T +K P +
Sbjct: 29 GYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYN 88
Query: 458 EEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKY-HLI 516
EEF + + L + V + +G + + +++ ++ + +
Sbjct: 89 EEFCANVTDG---GHLELAVFH-ETPLG---YDHFVANCTLQFQELLRTTGASDTFEGWV 141
Query: 517 D-SKNGRIQIELQW 529
D G++ + +
Sbjct: 142 DLEPEGKVFVVITL 155
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 101 bits (252), Expect = 1e-25
Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 15/116 (12%)
Query: 252 PVGILHVKVVKAMNLKKKDL-----------LGASDPYVKLKITEDKLPSKKTTVKHKNL 300
G+L +K+ +A++LK DPY+ L + D +T K K
Sbjct: 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV--DDSRIGQTATKQKTN 61
Query: 301 NPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTL 356
+P W++E+ V + +ELAV+ +G D + + +EL
Sbjct: 62 SPAWHDEFVTDVCNGRK--IELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFED 115
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 9e-08
Identities = 22/140 (15%), Positives = 45/140 (32%), Gaps = 28/140 (20%)
Query: 412 GLLVVIVHEAQ-----DVEGKHHTN---------PYARILFRGEE-RKTKHVKKNRDPRW 456
GLL + + EA + PY + +T +K P W
Sbjct: 6 GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAW 65
Query: 457 EEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSN--KRINEKYH 514
+EF + ++ + V + IG + + I +++ N + +
Sbjct: 66 HDEFVTDVCNG---RKIELAVFH-DAPIG---YDDFVANCTIQFEELLQNGSRHFEDWID 118
Query: 515 LIDSKNGRI--QIELQWRTA 532
L G++ I+L +
Sbjct: 119 L--EPEGKVYVIIDLSGSSG 136
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 97.8 bits (244), Expect = 2e-24
Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 5/118 (4%)
Query: 249 YRRPVGILHVKVVKAMNLKKKDLLG-ASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEE 307
Y V + +A L D SDPY+K+ I +K KT V K L+P ++E
Sbjct: 17 YNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDET 76
Query: 308 YNFTVRDPE---SQAVELAVYDWEQVGKHDKMGMNVVPLKELTP-EEPSVKTLDLLKN 361
+ F A+ + +++ + D +G ++PL + E + +++
Sbjct: 77 FTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISG 134
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 8e-07
Identities = 25/121 (20%), Positives = 49/121 (40%), Gaps = 18/121 (14%)
Query: 412 GLLVVIVHEAQDV----EGKHHTNPYARILF---RGEERKTKHVKKNRDPRWEEEFQFML 464
VV + EA+ + E ++PY ++ + + KT+ ++K DP ++E F F
Sbjct: 22 KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTF-- 79
Query: 465 EEPPTND----RLHVEVCSVSSRIGLLHPKETLGYIDINLSDV-VSNKRINEKYHLIDSK 519
P LH + S + +G + I LS + +S ++ +I
Sbjct: 80 YGIPYTQIQELALHFTILSF----DRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISGP 135
Query: 520 N 520
+
Sbjct: 136 S 136
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 2e-23
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNE 306
Y + V ++KA NLK D+ G SDPYVK+ + ++ KKT K +NLNP +NE
Sbjct: 11 YNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNE 70
Query: 307 EYNFTVR--DPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPE 349
+ F + + + V D +++ ++D +G + K E
Sbjct: 71 SFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGE 115
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 1e-04
Identities = 18/101 (17%), Positives = 43/101 (42%), Gaps = 13/101 (12%)
Query: 412 GLLVVIVHEAQD---VEGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQFM 463
++V + +A++ ++ ++PY ++ R E++KT K+N +P + E F F
Sbjct: 16 NSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFD 75
Query: 464 LEEPPTNDR-LHVEVCSVSSRIGLLHPKETLGYIDINLSDV 503
+ + + + V L + +G I ++
Sbjct: 76 IPTEKLRETTIIITVMDKDK----LSRNDVIGKIYLSWKSG 112
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 94.0 bits (234), Expect = 5e-23
Identities = 18/113 (15%), Positives = 42/113 (37%), Gaps = 6/113 (5%)
Query: 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSK-KTTVKHKNLNPEWNEE 307
Y L V ++A+ + G D YV+ + + +T +K + L+ W E
Sbjct: 21 YDCQKAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEG 77
Query: 308 YNFTV--RDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 358
+ + + + L + ++ +H G + L + + + +L
Sbjct: 78 LVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGEL 130
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 9e-09
Identities = 17/107 (15%), Positives = 27/107 (25%), Gaps = 9/107 (8%)
Query: 414 LVVIVHEAQDVEGKHHTNPYARILF----RGEERKTKHVKKNRDPRWEEEFQFMLEEPPT 469
L V EA + Y + E +T K+ WEE L E
Sbjct: 28 LFVTRLEAVTSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEEL 87
Query: 470 NDR-LHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHL 515
L + + + G + + L + L
Sbjct: 88 PTATLTLTLRTC----DRFSRHSVAGELRLGLDGTSVPLGAAQWGEL 130
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 93.6 bits (233), Expect = 7e-23
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 14/120 (11%)
Query: 254 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPS-----------KKTTVKHKNLNP 302
G L + +++A NL +D G SDP+VK+ + + ++T K+LNP
Sbjct: 18 GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77
Query: 303 EWNEEYNFTVRDPE---SQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 359
EWN+ + E + +E+ V+D+++ +D +G ++ L + + + + L
Sbjct: 78 EWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLK 137
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-06
Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 23/123 (18%)
Query: 412 GLLVVIVHEAQD---VEGKHHTNPYARI--------------LFRGEERKTKHVKKNRDP 454
G L++ + +A++ + +++P+ ++ +R+TK+V+K+ +P
Sbjct: 18 GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77
Query: 455 RWEEEFQFML--EEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEK 512
W + + E L V V + LG + I+LS
Sbjct: 78 EWNQTVIYKSISMEQLMKKTLEVTVWDY----DRFSSNDFLGEVLIDLSSTSHLDNTPRW 133
Query: 513 YHL 515
Y L
Sbjct: 134 YPL 136
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 94.0 bits (234), Expect = 7e-23
Identities = 23/115 (20%), Positives = 49/115 (42%), Gaps = 5/115 (4%)
Query: 249 YRRPVGILHVKVVKAMNLKKKDLL-GASDPYVKLKITED--KLPSKKTTVKHKNLNPEWN 305
Y + L V V + L D S+PYVK + D + +KT++K +NP ++
Sbjct: 18 YEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYD 77
Query: 306 EEYNFTVR--DPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 358
E + + + ++ +V+ + G++ +G + + ++ L L
Sbjct: 78 ETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPL 132
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 1e-10
Identities = 26/129 (20%), Positives = 44/129 (34%), Gaps = 14/129 (10%)
Query: 412 GLLVVIVHEAQD----VEGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQF 462
LVV V E E K +NPY + R +RKT + +P ++E ++
Sbjct: 23 QSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRY 82
Query: 463 MLEEPPTNDR-LHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNG 521
+ E R L V G LG +I + +K+++ L +
Sbjct: 83 EIPESLLAQRTLQFSVWHH----GRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKISA 138
Query: 522 RIQIELQWR 530
+
Sbjct: 139 ESEGHHHHH 147
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 92.1 bits (229), Expect = 2e-22
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 9/119 (7%)
Query: 249 YRRPVGILHVKVVKAMNLK-------KKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLN 301
Y L V+V++A +L + + S+PYVK+ + D+ SK+T VK K
Sbjct: 21 YDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQK 80
Query: 302 PEWNEEYNFTVRDPE--SQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 358
P + E Y F + E + + L V D+++ +H +G VPL E+ + L
Sbjct: 81 PVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKAL 139
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 7e-08
Identities = 27/122 (22%), Positives = 45/122 (36%), Gaps = 18/122 (14%)
Query: 412 GLLVVIVHEAQD----------VEGKHHTNPYARILF---RGEERKTKHVKKNRDPRWEE 458
L V V EA+D + H+NPY +I + ++T +K + P +EE
Sbjct: 26 NHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEE 85
Query: 459 EFQFMLEEPPTNDR-LHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLID 517
+ F + R L + V +G + + L +V K + LI
Sbjct: 86 RYTFEIPFLEAQRRTLLLTVVDFDK----FSRHCVIGKVSVPLCEVDLVKGGHWWKALIP 141
Query: 518 SK 519
S
Sbjct: 142 SG 143
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 92.5 bits (230), Expect = 3e-22
Identities = 40/105 (38%), Positives = 61/105 (58%), Gaps = 4/105 (3%)
Query: 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNE 306
Y G L V +++A NLKK D+ G SDPYVK+ + ++ +L KKTT+K LNP +NE
Sbjct: 20 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNE 79
Query: 307 EYNFTVRDPESQAV--ELAVYDWEQVGKHDKMGMNVVPLKELTPE 349
++F V + Q V + V D++++GK+D +G V E
Sbjct: 80 SFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAE 124
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 2e-04
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
Query: 412 GLLVVIVHEAQD---VEGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQFM 463
G L V++ EA++ ++ ++PY +I R +++KT K +P + E F F
Sbjct: 25 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84
Query: 464 LEEPPTNDR-LHVEVC 478
+ + V V
Sbjct: 85 VPFEQIQKVQVVVTVL 100
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 5e-22
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Query: 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNE 306
Y+ L V V+KA +L K D+ G SDPYVK+ + ++ KKT VK N +NE
Sbjct: 25 YQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNE 84
Query: 307 EYNFTVRDPESQAV--ELAVYDWEQVGKHDKMGMNVVPLKELTPE 349
+ F + + + E V D E+ +++ +G V+
Sbjct: 85 LFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSG 129
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 3e-04
Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 13/99 (13%)
Query: 412 GLLVVIVHEAQD---VEGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQFM 463
L V+V +A+ + ++PY ++ R ++KT K + + E F F
Sbjct: 30 NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD 89
Query: 464 LEEPPTNDR-LHVEVCSVSSRIGLLHPKETLGYIDINLS 501
+ + + V S R E +G + + +
Sbjct: 90 IPCESLEEISVEFLVLD-SERGS---RNEVIGRLVLGAT 124
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 90.9 bits (226), Expect = 1e-21
Identities = 30/105 (28%), Positives = 57/105 (54%), Gaps = 4/105 (3%)
Query: 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNE 306
Y G L V +++ ++L D G SDP+VKL + D K KT +K K LNPE+NE
Sbjct: 32 YSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNE 91
Query: 307 EYNFTVRDPE--SQAVELAVYDWEQVGKHDKMGMNVVPLKELTPE 349
E+ + ++ + ++++++V+D++ +D +G + +
Sbjct: 92 EFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGER 136
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 3e-05
Identities = 21/127 (16%), Positives = 53/127 (41%), Gaps = 18/127 (14%)
Query: 412 GLLVVIVHEAQD---VEGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQFM 463
G L+V + ++ +++P+ ++ + + KT+ KK +P + EEF +
Sbjct: 37 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 96
Query: 464 LEEPPTNDR-LHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGR 522
++ + L + V + +G + +S +R+ Y + +K+ +
Sbjct: 97 IKHSDLAKKSLDISVWD-YDIGK---SNDYIGGCQLGISA--KGERLKHWYECLKNKDKK 150
Query: 523 IQIELQW 529
I+ +W
Sbjct: 151 IE---RW 154
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 90.2 bits (224), Expect = 2e-21
Identities = 27/102 (26%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 254 GILHVKVVKAMNLKKKDL-LGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNF 310
G L V+V++A +L +K PYVK+ + E+ + KKT + K L+P + + F
Sbjct: 30 GQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVF 89
Query: 311 TVRDPESQAVELAVY-DWEQVGKHDKMGMNVVPLKELTPEEP 351
P+ + +++ V+ D+ ++ MG+ + L+EL
Sbjct: 90 DE-SPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSM 130
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 2e-11
Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 14/114 (12%)
Query: 411 GGLLVVIVHEAQDV----EGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQ 461
G L V V A+ + K PY ++ ++KT+ +K DP +++
Sbjct: 29 KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLV 88
Query: 462 FMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHL 515
F +E P L V V R+ K +G I L ++ + + Y L
Sbjct: 89 F--DESPQGKVLQVIVWGDYGRMD---HKCFMGVAQILLEELDLSSMVIGWYKL 137
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 3e-21
Identities = 20/109 (18%), Positives = 51/109 (46%), Gaps = 7/109 (6%)
Query: 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPS--KKTTVKHKNLNPEWNE 306
+ + L V ++ A +L ++ +PYVK+ D+ ++T K L P+WN+
Sbjct: 16 FDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQ 75
Query: 307 EYNFTVRDPE---SQAVELAVYDWEQVGKHDK--MGMNVVPLKELTPEE 350
+ ++ + +E+ ++D +V + + +G ++ L+ ++
Sbjct: 76 TFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD 124
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 1e-07
Identities = 30/123 (24%), Positives = 46/123 (37%), Gaps = 17/123 (13%)
Query: 411 GGLLVVIVHEAQD---VEGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQF 462
G L+V + A+D E NPY +I F +R+TK VKK +P+W + F +
Sbjct: 20 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY 79
Query: 463 MLEEPPTND----RLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS 518
+ L + + E LG I I L + + Y L
Sbjct: 80 --SPVHRREFRERMLEITLW--DQARVREEESEFLGEILIELETALLD-DEPHWYKLQTH 134
Query: 519 KNG 521
+G
Sbjct: 135 DSG 137
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 5e-21
Identities = 20/109 (18%), Positives = 51/109 (46%), Gaps = 7/109 (6%)
Query: 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPS--KKTTVKHKNLNPEWNE 306
+ + L V ++ A +L ++ +PYVK+ D+ ++T K L P+WN+
Sbjct: 13 FDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQ 72
Query: 307 EYNFTVRDPE---SQAVELAVYDWEQVGKHDK--MGMNVVPLKELTPEE 350
+ ++ + +E+ ++D +V + + +G ++ L+ ++
Sbjct: 73 TFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD 121
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 1e-07
Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 16/110 (14%)
Query: 411 GGLLVVIVHEAQD---VEGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQF 462
G L+V + A+D E NPY +I F +R+TK VKK +P+W + F +
Sbjct: 17 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY 76
Query: 463 MLEEPPTND----RLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKR 508
+ L + + +R+ E LG I I L + +
Sbjct: 77 --SPVHRREFRERMLEITLWD-QARVR-EEESEFLGEILIELETALLDDE 122
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 6e-21
Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
Query: 254 GILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFT 311
G L + V+ +L +D +PYVK + D K +KT + K NP +NE ++
Sbjct: 20 GTLFIMVMHIKDLVTEDG-ADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYS 78
Query: 312 V---RDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 359
+ ++L+V E + ++ +G +PLK+ + +VK L
Sbjct: 79 GYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLT 129
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 1e-08
Identities = 29/115 (25%), Positives = 43/115 (37%), Gaps = 17/115 (14%)
Query: 412 GLLVVIVHEAQD--VEGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQFML 464
G L ++V +D E NPY + + +RKTK +K R+P + E +
Sbjct: 20 GTLFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVY-- 77
Query: 465 EEPPTND----RLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHL 515
L + V S S L LG I + L D +K + Y L
Sbjct: 78 SGYSKETLRQRELQLSVLSAES----LRENFFLGGITLPLKDFNLSKETVKWYQL 128
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 7e-21
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 7/119 (5%)
Query: 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNE 306
+ L V V NL G SDPYV++ + D + +KT V K LNP +++
Sbjct: 19 HSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQ 77
Query: 307 EYNFTVRDPE--SQAVELAVYDWEQVGKHDK--MGMNVVPLKELTPEEPSVKTLDLLKN 361
++F+V PE + +++AV + DK +G +V L + + DL ++
Sbjct: 78 SFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTED 136
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 1e-09
Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 10/114 (8%)
Query: 412 GLLVVIVHEAQD--VEGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQFML 464
L+V+VH ++ + ++PY R+ R RKT KK +P +++ F F +
Sbjct: 24 NKLIVVVHACRNLIAFSEDGSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSV 83
Query: 465 EEPPTNDR-LHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLID 517
P R L V V + + K LG + + L+ K + Y L +
Sbjct: 84 SLPEVQRRTLDVAVKNSGGFLS--KDKGLLGKVLVALASEELAKGWTQWYDLTE 135
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 87.5 bits (217), Expect = 2e-20
Identities = 12/108 (11%), Positives = 36/108 (33%), Gaps = 5/108 (4%)
Query: 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKI---TEDKLPSKKTTVKHKNLNPEWN 305
Y + +++ NL +++ + +E +T + +N
Sbjct: 38 YDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFN 97
Query: 306 EEYNFTVRDPE--SQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEP 351
E + ++ P + + + V ++ + +G + L E+
Sbjct: 98 EVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGE 145
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 2e-08
Identities = 18/116 (15%), Positives = 45/116 (38%), Gaps = 15/116 (12%)
Query: 412 GLLVVIVHEAQD---VEGKHHTNPYARILF------RGEERKTKHVKKNRDPRWEEEFQF 462
+++ + + + + R+ +T+ + + + E F
Sbjct: 43 KQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWV 102
Query: 463 MLEEPPTNDR-LHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEK-YHLI 516
+ P + + L V+VC+ H +E LG I+L++V + + + Y+L+
Sbjct: 103 SMSYPALHQKTLRVDVCTTDR----SHLEECLGGAQISLAEVCRSGERSTRWYNLL 154
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 86.3 bits (214), Expect = 4e-20
Identities = 21/102 (20%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
Query: 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNE 306
+L + +++ L K G DPYVK+ + + +L +KT +P ++E
Sbjct: 22 IDAQDRVLLLHIIEGKGLISKQP-GTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHE 80
Query: 307 EYNFTVRDPESQ-AVELAVYDWEQVGKHDK-MGMNVVPLKEL 346
+ F V++ + Q + + V++ + +G +K L
Sbjct: 81 HFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSL 122
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 2e-10
Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 12/128 (9%)
Query: 412 GLLVVIVHEAQD--VEGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQFML 464
+L++ + E + + +PY +I R +KT+ V RDP + E F F +
Sbjct: 27 RVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPV 86
Query: 465 EEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEK-YHLIDSKNGRI 523
+E RL V V +R +G + + +++ + Y+L+ GR
Sbjct: 87 QEEDDQKRLLVTVW---NRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEHLGRT 143
Query: 524 Q-IELQWR 530
+ +++ R
Sbjct: 144 KHLKVARR 151
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 66.2 bits (161), Expect = 3e-13
Identities = 19/93 (20%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 254 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVR 313
+L V V KA ++ + YV LK+ K TT+ + P W +++ F +
Sbjct: 5 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQN----VKSTTIAVRGSQPSWEQDFMFEIN 57
Query: 314 DPESQAVELAVYDWEQVGKHDKMGMNVVPLKEL 346
+ + + V++ + + +G +PL+ +
Sbjct: 58 RLDLG-LTVEVWN-KGLIWDTMVGTVWIPLRTI 88
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 2e-07
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Query: 412 GLLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTND 471
LL V V +A+ + N Y + + + T V+ + P WE++F F + +
Sbjct: 5 SLLCVGVKKAKFDGAQEKFNTYVTLKVQNVKSTTIAVRGS-QPSWEQDFMFEINRL--DL 61
Query: 472 RLHVEVCSVSSRIGLLHPKETLGYIDINLSDV 503
L VEV + L +G + I L +
Sbjct: 62 GLTVEVWNKG-----LIWDTMVGTVWIPLRTI 88
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 71.1 bits (173), Expect = 3e-13
Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 5/102 (4%)
Query: 244 DPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPE 303
+R + L V +A +L A+D Y+K+ + +T V N NP
Sbjct: 384 QDCCPRQRGLAHLVVSNFRAEHLWGDYT-TATDAYLKVFFGGQE---FRTGVVWNNNNPR 439
Query: 304 WNEEYNF-TVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLK 344
W ++ +F V + + V+D + D +G
Sbjct: 440 WTDKMDFENVLLSTGGPLRVQVWDADYGWDDDLLGSCDRSPH 481
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 56.1 bits (134), Expect = 1e-08
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 404 PENTPAGGGLLVVIVHEAQDVEGK--HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQ 461
G LVV A+ + G T+ Y ++ F G+E +T V N +PRW ++
Sbjct: 386 CCPRQRGLAHLVVSNFRAEHLWGDYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMD 445
Query: 462 FMLEEPPTNDRLHVEV 477
F T L V+V
Sbjct: 446 FENVLLSTGGPLRVQV 461
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 61.2 bits (148), Expect = 3e-11
Identities = 18/93 (19%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 254 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVR 313
+L V V KA ++ + YV LK+ + TT+ + P W +++ F +
Sbjct: 14 SLLCVGVKKAKFDGAQEKF---NTYVTLKVQ----NVESTTIAVRGSQPSWEQDFMFEIN 66
Query: 314 DPESQAVELAVYDWEQVGKHDKMGMNVVPLKEL 346
+ + + V++ + + +G +PL+ +
Sbjct: 67 RLDLG-LTVEVWN-KGLIWDTMVGTVWIPLRTI 97
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 6e-06
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 403 APENTPAGGG---LLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEE 459
+P + GGG LL V V +A+ + N Y + + E T V+ + P WE++
Sbjct: 2 SPGISGGGGGILSLLCVGVKKAKFDGAQEKFNTYVTLKVQNVESTTIAVRGS-QPSWEQD 60
Query: 460 FQFMLEEPPTNDRLHVEV 477
F F + + L VEV
Sbjct: 61 FMFEINRL--DLGLTVEV 76
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624 | Back alignment and structure |
|---|
Score = 63.4 bits (153), Expect = 8e-11
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Query: 256 LHVKVVKAMNLKKKDLLGAS--DPYVKLKI---TEDKLPSKKTTVKHKNLNPEWNEEYNF 310
L V+++ L K + S DP V ++I D + + + NP W+ E+ F
Sbjct: 499 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 558
Query: 311 TVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTP 348
V P+ V V D++ K+D +G + +P L
Sbjct: 559 EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQ 596
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 53.8 bits (128), Expect = 8e-08
Identities = 28/187 (14%), Positives = 58/187 (31%), Gaps = 14/187 (7%)
Query: 245 PSK-AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNL--- 300
P+K RR +L + +++A L K Y +L + D + +TT K ++
Sbjct: 1 PNKDNSRRVDNVLKLWIIEARELPPKK-----RYYCELCL--DDMLYARTTSKPRSASGD 53
Query: 301 NPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDK---MGMNVVPLKELTPEEPSVKTLD 357
W E + F D ++ K DK +G+ VP+ L + +
Sbjct: 54 TVFWGEHFEFNNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYP 113
Query: 358 LLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVI 417
+ S G + P +++ + +
Sbjct: 114 VTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMSILPMELYKEFAEYV 173
Query: 418 VHEAQDV 424
+ + +
Sbjct: 174 TNHYRML 180
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 48.1 bits (113), Expect = 4e-06
Identities = 14/112 (12%), Positives = 32/112 (28%), Gaps = 8/112 (7%)
Query: 414 LVVIVHEAQDVEGKHHTNPYARILFRGEERK----TKHVKKNRDPRWEEEFQFMLEEPPT 469
L + + EA+++ K Y + W E F+F P
Sbjct: 13 LKLWIIEARELPPKK--RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEF--NNLPA 68
Query: 470 NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNG 521
L + + S + +G + + ++ + + Y +
Sbjct: 69 VRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGS 120
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 3e-05
Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 9/134 (6%)
Query: 252 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFT 311
+G L V V++A LK G S+PY ++ + S T LNP+WN F
Sbjct: 385 GIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQ---SYTTRTIQDTLNPKWNFNCQFF 441
Query: 312 VRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEK 371
++D + L ++D +Q D +G +P+ ++ E+ S + + + L +E
Sbjct: 442 IKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGP--MTRRLLL----HEV 495
Query: 372 SRGQLVVEFIYKPF 385
G++ V F + F
Sbjct: 496 PTGEVWVRFDLQLF 509
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 6e-05
Identities = 67/525 (12%), Positives = 134/525 (25%), Gaps = 151/525 (28%)
Query: 31 FQPTDVKNPEIRPLVERDSETLQQMLP--EIPLWVKCPDYDRVDWLNKFLELMWPYLDKA 88
F+ V N + + + + + +L EI + D + L L W L K
Sbjct: 25 FEDAFVDNFDCKDV----QDMPKSILSKEEIDHIIMSKDAV-----SGTLRLFWTLLSKQ 75
Query: 89 ICKTAKNIAK-----------PIIAEQI------PKYKIESVEFETLTLGTLPPTFQGMK 131
+ + + + I P + L F
Sbjct: 76 -----EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 132 VYVTDEKELIMEPCLKWAANPNVTI-GVKAFGLKATVQVVDLQVFAQPRITLKPLVPAFP 190
V + + L+ NV I GV G K V L V ++ K
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSG-K---TWVALDVCLSYKVQCK-----MD 181
Query: 191 CFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQVANMYLWPKTLEVPILDPSKAYR 250
I+ ++ ++ + + D S +
Sbjct: 182 F--KIF-------WLNLKNCNSPETVLE--------MLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 251 RPVGILHVKVVKAMNLKKKDLLGASDPYVK-LKITEDKLPSKKTTVKHKNLNPEWNEEYN 309
+ + + + LL S PY L + +
Sbjct: 225 LRIHSI--------QAELRRLL-KSKPYENCLLVLLN----------------------- 252
Query: 310 FTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQN 369
V++ + W N+ S K L + + D +
Sbjct: 253 --VQNAK---------AWN--------AFNL-----------SCKILLTTRFKQVTDFLS 282
Query: 370 EKSRGQLVVEFIYKPFKEEDLPKSFEE--SQTVQKAPENTPAGGGLLVVIVHEAQDVEGK 427
+ + ++ +++ + Q P + I+ E+ +G
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR-DGL 341
Query: 428 HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSV---SSRI 484
+ + + ++ T ++ + P R + SV S+ I
Sbjct: 342 ATWDNWKHVNC---DKLTTIIES-----------SLNVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 485 GLLHPKETLGYIDINLSDVVSNKRINE--KYHLI--DSKNGRIQI 525
P L I ++ +N+ KY L+ K I I
Sbjct: 388 ----PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B Length = 799 | Back alignment and structure |
|---|
Score = 42.7 bits (99), Expect = 3e-04
Identities = 19/124 (15%), Positives = 44/124 (35%), Gaps = 15/124 (12%)
Query: 232 YLWPKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITE---DKL 288
++ + + L + V+ L ++ YV++++ D
Sbjct: 656 FMRRPDKQFNPFSVDRIDVVVATTLSITVISGQFLSERS----VRTYVEVELFGLPGDPK 711
Query: 289 PSKKTTVKHKN--LNPEWNEEY--NFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLK 344
+T + +NP W EE + PE ++ +AV + + +G ++P+
Sbjct: 712 RRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVME----EGNKFLGHRIIPIN 767
Query: 345 ELTP 348
L
Sbjct: 768 ALNS 771
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A Length = 816 | Back alignment and structure |
|---|
Score = 43.0 bits (100), Expect = 3e-04
Identities = 19/124 (15%), Positives = 46/124 (37%), Gaps = 15/124 (12%)
Query: 232 YLWPKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSK 291
++ S G + +K++ A L K + YV++++ +
Sbjct: 628 FMRKLDKRFDPFTESTVDGVVAGTIEIKIISAQFLSDKQI----SSYVEVEMYGLPTDTV 683
Query: 292 K-----TTVKHKNLNPEWNEEYNF--TVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLK 344
+ +++ ++P ++E+ V P+ V + V + +G V+PL
Sbjct: 684 RKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSE----ENGKFIGHRVMPLD 739
Query: 345 ELTP 348
+ P
Sbjct: 740 GIKP 743
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} Length = 138 | Back alignment and structure |
|---|
Score = 38.9 bits (90), Expect = 8e-04
Identities = 10/76 (13%), Positives = 26/76 (34%), Gaps = 5/76 (6%)
Query: 254 GILHVKVVKAMNLKKKDLLG-ASDPYVKLKITEDKLP--SKKTTVKHKNLNPEWNEEYNF 310
L + + + G A +PY + + E + K + P W+ ++
Sbjct: 10 PFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDA 69
Query: 311 TVRDPESQAVELAVYD 326
+ + +++ V
Sbjct: 70 HINK--GRVMQIIVKG 83
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} Length = 885 | Back alignment and structure |
|---|
Score = 41.2 bits (95), Expect = 8e-04
Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 14/123 (11%)
Query: 232 YLWPKTLEVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKIT---EDKL 288
++ L VKV+ L + YV++ + D
Sbjct: 703 FMRRPDKSFDPFTEVIVDGIVANALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTR 758
Query: 289 PSKKT-TVKHKNLNPEWNEE-YNF-TVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKE 345
+T T + + NP W+EE ++F V P ++ +A ++ +G ++P+
Sbjct: 759 RKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEEGG----KFVGHRILPVSA 814
Query: 346 LTP 348
+
Sbjct: 815 IRS 817
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 532 | |||
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 100.0 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 100.0 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 99.86 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 99.85 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 99.84 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 99.84 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 99.83 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 99.83 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 99.83 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 99.82 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 99.82 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 99.81 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 99.8 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 99.8 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 99.8 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 99.78 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 99.78 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 99.78 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 99.78 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 99.78 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 99.77 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 99.77 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 99.77 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 99.76 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 99.76 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 99.76 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 99.76 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 99.76 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 99.76 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 99.76 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 99.76 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 99.76 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 99.75 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 99.75 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 99.75 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 99.74 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 99.74 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 99.74 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 99.74 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 99.74 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 99.74 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 99.74 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 99.74 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 99.73 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 99.73 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 99.73 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 99.73 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 99.73 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 99.73 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 99.72 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 99.72 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 99.72 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 99.72 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 99.71 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 99.71 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 99.71 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 99.71 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 99.71 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 99.71 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 99.71 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 99.71 | |
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 99.7 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 99.7 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 99.7 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 99.69 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 99.69 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 99.69 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 99.69 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 99.69 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 99.67 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 99.65 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 99.63 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 99.63 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 99.62 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 99.61 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 99.61 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 99.58 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 99.58 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 99.57 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 99.57 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 99.53 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 99.5 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 99.42 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 99.39 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 99.36 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 99.35 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 99.27 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 99.27 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.25 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.21 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 99.21 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 99.03 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 98.99 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 98.98 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 98.97 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 98.97 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 98.94 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 98.92 | |
| 3l4c_A | 220 | Dedicator of cytokinesis protein 1; DOCK180, DOCK1 | 93.46 | |
| 2yrb_A | 156 | Protein fantom; beta sandwich, NPPSFA, national pr | 92.22 | |
| 2yrb_A | 156 | Protein fantom; beta sandwich, NPPSFA, national pr | 91.98 | |
| 2wxf_A | 940 | Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca | 91.45 | |
| 3hhm_A | 1091 | Phosphatidylinositol-4,5-bisphosphate 3-kinase cat | 91.01 | |
| 2wxf_A | 940 | Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca | 87.51 | |
| 1e7u_A | 961 | Phosphatidylinositol 3-kinase catalytic subunit; p | 84.57 |
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=285.23 Aligned_cols=237 Identities=26% Similarity=0.426 Sum_probs=198.3
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYD 326 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d 326 (532)
+....|.|.|+|++|++|+.+|..|.+||||++++.+.....++|++++++.||+|||+|.|.+... ....|.|+|||
T Consensus 14 y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d 93 (284)
T 2r83_A 14 YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYD 93 (284)
T ss_dssp EETTTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEE
T ss_pred EECCCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEE
Confidence 4456789999999999999999999999999999987554567999999999999999999998643 35799999999
Q ss_pred ccCCCCCCeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEEccCCCCCcccccccccccCCCC
Q 009539 327 WEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPEN 406 (532)
Q Consensus 327 ~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~ 406 (532)
+|..++|++||++.++|.++..+.....|++|..... ......|+|++++.|.|.
T Consensus 94 ~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~----~~~~~~G~i~l~l~~~p~--------------------- 148 (284)
T 2r83_A 94 FDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEK----EEQEKLGDICFSLRYVPT--------------------- 148 (284)
T ss_dssp CCSSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSS----CCCCCCCEEEEEEEEETT---------------------
T ss_pred CCCCCCCceeEEEEEcchhcccCCcceeEEEeecccc----ccccccccEEEEEEecCc---------------------
Confidence 9999999999999999999998888888998854211 124568999999999852
Q ss_pred CCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEc--C---eeEEEeeecCCCCCcccceEEEEecCCCC-CCeEEEEE
Q 009539 407 TPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR--G---EERKTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEV 477 (532)
Q Consensus 407 ~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~--~---~~~kT~vv~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V 477 (532)
.+.|.|.|++|+||+.. +.+||||++++. + .+++|++++++.||+|||.|.|.+..... ...|.|+|
T Consensus 149 ----~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V 224 (284)
T 2r83_A 149 ----AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTV 224 (284)
T ss_dssp ----TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEE
T ss_pred ----CCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEE
Confidence 67999999999999863 679999999984 2 34699999999999999999999975422 23799999
Q ss_pred EEccccccCCCCCceeEEEEEechhh----------hc--cceeceEEEeCCC
Q 009539 478 CSVSSRIGLLHPKETLGYIDINLSDV----------VS--NKRINEKYHLIDS 518 (532)
Q Consensus 478 ~d~~~~~~~~~~d~~lG~~~i~L~~l----------~~--~~~~~~~~~L~~~ 518 (532)
||++. ++.+++||++.++++.+ +. +....+||+|...
T Consensus 225 ~d~d~----~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~~ 273 (284)
T 2r83_A 225 LDYDK----IGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE 273 (284)
T ss_dssp EECCS----SSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBCH
T ss_pred EeCCC----CCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCCc
Confidence 99986 67899999999999752 22 3456799999754
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=279.84 Aligned_cols=237 Identities=27% Similarity=0.461 Sum_probs=190.2
Q ss_pred cCCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCC--CCEEEEEEE
Q 009539 248 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPE--SQAVELAVY 325 (532)
Q Consensus 248 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~v~ 325 (532)
.+....+.|.|+|++|++|+.+|..|.+||||++++.+.....++|+++++++||+|||+|.|.+.... ...|+|+||
T Consensus 14 ~y~~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~ 93 (296)
T 1dqv_A 14 RYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVY 93 (296)
T ss_dssp ECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEE
T ss_pred EEeCCCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEE
Confidence 355677899999999999999999999999999999644344579999999999999999999986432 458999999
Q ss_pred EccCCCCCCeeEEEEEe-CccCCC-CCCeEEEEecccccccCCCCCCccccEEEEEEEEEEccCCCCCcccccccccccC
Q 009539 326 DWEQVGKHDKMGMNVVP-LKELTP-EEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKA 403 (532)
Q Consensus 326 d~d~~~~d~~iG~~~i~-l~~l~~-~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~ 403 (532)
|+|.+++|++||++.++ +.++.. ......|++|... .......|+|++++.|.|.
T Consensus 94 d~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~-----~~~~~~~G~i~vsl~y~~~------------------ 150 (296)
T 1dqv_A 94 DFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEG-----GSEKADLGELNFSLCYLPT------------------ 150 (296)
T ss_dssp ECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCC-----SSCCSCCCEEEEEEEEETT------------------
T ss_pred EcCCCCCCceEEEEEeccccccccCCccceeeeccccc-----cccccccceEEEEEEeccc------------------
Confidence 99999999999999996 444433 2334456666331 1134568999999999752
Q ss_pred CCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEc--C---eeEEEeeecCCCCCcccceEEEEecCCCC-CCeEE
Q 009539 404 PENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR--G---EERKTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLH 474 (532)
Q Consensus 404 ~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~--~---~~~kT~vv~~t~nP~w~e~f~f~v~~~~~-~~~l~ 474 (532)
.|.|.|+|++|+||+.. +.+||||++++. + +++||++++++.||+|||.|.|.+..... ...|.
T Consensus 151 -------~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~ 223 (296)
T 1dqv_A 151 -------AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLS 223 (296)
T ss_dssp -------TTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCC
T ss_pred -------cceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEE
Confidence 68999999999999863 578999999996 3 45799999999999999999999875422 23799
Q ss_pred EEEEEccccccCCCCCceeEEEEEechhhhc-------------cceeceEEEeCCC
Q 009539 475 VEVCSVSSRIGLLHPKETLGYIDINLSDVVS-------------NKRINEKYHLIDS 518 (532)
Q Consensus 475 v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~-------------~~~~~~~~~L~~~ 518 (532)
|+|||++. ++++++||++.++++++.. ++...+|+.|...
T Consensus 224 i~V~d~d~----~~~~~~iG~~~i~l~~~~~~~~~~W~~~~~~~~~~~~~w~~L~~~ 276 (296)
T 1dqv_A 224 IAVVDYDC----IGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVEE 276 (296)
T ss_dssp CEEEECCS----SSCCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCSCSCCCCBBC
T ss_pred EEEEeCCC----CCCCceEEEEEECCccCCchhHHHHHHHHhCCCCceeEeeeccCc
Confidence 99999986 6789999999999987643 2345677777654
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.9e-21 Score=166.84 Aligned_cols=128 Identities=29% Similarity=0.485 Sum_probs=109.7
Q ss_pred CCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCC---CCCEEEEEEEEc
Q 009539 251 RPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP---ESQAVELAVYDW 327 (532)
Q Consensus 251 ~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~---~~~~L~v~v~d~ 327 (532)
...|.|.|+|++|++|+..+. |.+||||++++++++ ++|++++++.||+|||+|.|.+..+ ....|.|+|||+
T Consensus 4 ~~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~~~---~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~ 79 (140)
T 2dmh_A 4 GSSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEK---KKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDF 79 (140)
T ss_dssp CBCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSSCE---EECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEET
T ss_pred CCCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECCEe---EEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEEC
Confidence 457899999999999999998 999999999998754 6999999999999999999999754 368999999999
Q ss_pred cCCCCCCeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEEc
Q 009539 328 EQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF 385 (532)
Q Consensus 328 d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 385 (532)
|..++|++||++.+++.++..+.....|+++.+.... .+....|+|+++++|.|.
T Consensus 80 d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~---~~~~~~G~l~l~~~~~p~ 134 (140)
T 2dmh_A 80 ETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNE---KGQDTGATIDLVIGYDPP 134 (140)
T ss_dssp TCSSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECT---TCCEEEEEEEEEEEECCC
T ss_pred CCCCCCceEEEEEEEHHHhccCCCceeEEeeeeccCC---CCCCCCCEEEEEEEEECC
Confidence 9999999999999999999988877888874332221 124567999999999985
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=3e-21 Score=168.25 Aligned_cols=127 Identities=28% Similarity=0.515 Sum_probs=110.8
Q ss_pred cCCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeC-CCCCceeecEEEEEeeCCCCCEEEEEEEE
Q 009539 248 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKH-KNLNPEWNEEYNFTVRDPESQAVELAVYD 326 (532)
Q Consensus 248 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~~~~~L~v~v~d 326 (532)
....+.|.|+|+|++|++|+..+..|.+||||+++++++. .+|++++ ++.||+|||+|.|.+.+ ....|+|+|||
T Consensus 4 ~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~kT~~~~~~~~nP~Wne~f~f~v~~-~~~~l~~~V~d 79 (136)
T 1wfj_A 4 GSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQD---QKSNVAEGMGTTPEWNETFIFTVSE-GTTELKAKIFD 79 (136)
T ss_dssp CCCCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCE---EECCCCTTCCSSCEEEEEEEEEEES-SCCEEEEEECC
T ss_pred CCCCCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCcc---ceeEeccCCCCCCccCcEEEEEECC-CCCEEEEEEEE
Confidence 3456899999999999999999988999999999998764 4899998 89999999999999987 56899999999
Q ss_pred ccCCCCCCeeEEEEEeCccCC-CCCCeEEEEecccccccCCCCCCccccEEEEEEEEEEcc
Q 009539 327 WEQVGKHDKMGMNVVPLKELT-PEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFK 386 (532)
Q Consensus 327 ~d~~~~d~~iG~~~i~l~~l~-~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~ 386 (532)
++.+++|++||++.+++.++. .+.....|++|.+ +.+..|+|+++++|.|..
T Consensus 80 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~--------~~~~~G~i~l~l~~~p~~ 132 (136)
T 1wfj_A 80 KDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK--------DEEYKGEIWVALSFKPSG 132 (136)
T ss_dssp SSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEEE--------TTEEEEEEEEEEEEEECC
T ss_pred CCCCCCCceEEEEEEEHHHhccCCCCCcEEEEeec--------CCccCEEEEEEEEEEeCC
Confidence 999999999999999999994 4444567887752 367899999999999964
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-20 Score=166.37 Aligned_cols=129 Identities=34% Similarity=0.582 Sum_probs=102.8
Q ss_pred CCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc---CCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEE
Q 009539 250 RRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK---LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYD 326 (532)
Q Consensus 250 ~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~---~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d 326 (532)
....+.|+|+|++|++|+.+|..|.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ...|.|+|||
T Consensus 16 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~l~~~V~d 94 (153)
T 3b7y_A 16 EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQ-QHRLLFEVFD 94 (153)
T ss_dssp CTTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTT-TCEEEEEEEE
T ss_pred CCCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCC-CCEEEEEEEE
Confidence 45789999999999999999988999999999998532 2356999999999999999999999764 5799999999
Q ss_pred ccCCCCCCeeEEEEEeCccCCCCCCe------EEEEecccccccCCCCCCccccEEEEEEEEEE
Q 009539 327 WEQVGKHDKMGMNVVPLKELTPEEPS------VKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 384 (532)
Q Consensus 327 ~d~~~~d~~iG~~~i~l~~l~~~~~~------~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p 384 (532)
++..++|++||++.+++.++..+... ..|+.|.... ......|+|+++++|.|
T Consensus 95 ~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~-----~~~~~~G~i~l~l~~~P 153 (153)
T 3b7y_A 95 ENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRS-----HKSRVKGYLRLKMTYLP 153 (153)
T ss_dssp CCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSS-----TTCCCCSEEEEEEEECC
T ss_pred CCCCcCCCeeEEEEEEHHHcccCCCccccccccccccccccc-----CCCCcceEEEEEEEEeC
Confidence 99999999999999999999876543 4788774321 13467899999999976
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-20 Score=161.31 Aligned_cols=119 Identities=22% Similarity=0.368 Sum_probs=102.5
Q ss_pred eEEEEEEEEEcCCCCcC---CCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccC
Q 009539 253 VGILHVKVVKAMNLKKK---DLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQ 329 (532)
Q Consensus 253 ~g~L~V~v~~A~~L~~~---d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~ 329 (532)
.|.|.|+|++|++|+.+ +..|.+||||++++++.....++|++++++.||+|||+|.|.+.......|.|+|||++.
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~ 81 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence 58999999999999984 666899999999998754456799999999999999999999976667899999999998
Q ss_pred CCCCCeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEE
Q 009539 330 VGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 382 (532)
Q Consensus 330 ~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~ 382 (532)
. +|++||++.++|.++..+.....|++|. ....|+|+++++.
T Consensus 82 ~-~~~~iG~~~i~l~~l~~~~~~~~~~~L~----------~~~~g~i~~~le~ 123 (126)
T 1rlw_A 82 V-MDETLGTATFTVSSMKVGEKKEVPFIFN----------QVTEMVLEMSLEV 123 (126)
T ss_dssp S-CCEEEEEEEEEGGGSCTTCEEEEEEEET----------TTEEEEEEEEEEC
T ss_pred C-CCceeEEEEEEHHHccCCCcEEEEEEcC----------CCceEEEEEEEEe
Confidence 7 4999999999999999888888999882 3456777777653
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-20 Score=162.59 Aligned_cols=126 Identities=30% Similarity=0.477 Sum_probs=108.3
Q ss_pred cCCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEc
Q 009539 248 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDW 327 (532)
Q Consensus 248 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~ 327 (532)
.+..+.|.|+|+|++|++|+..+..|.+||||+++++++. .+|++++++.||+|||+|.|.+.+. .+.|.|+|||+
T Consensus 7 ~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~kT~~~~~t~nP~wne~f~f~~~~~-~~~l~i~V~d~ 82 (133)
T 2ep6_A 7 GDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDR---LQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDE 82 (133)
T ss_dssp CSCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEE---EECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEE
T ss_pred cccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEE---EEeeeecCCCCCccccEEEEEecCC-CCEEEEEEEEC
Confidence 4667899999999999999999999999999999998754 5999999999999999999999865 57899999999
Q ss_pred cCCCCCCeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEE
Q 009539 328 EQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 384 (532)
Q Consensus 328 d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p 384 (532)
|..++|++||++.+++.++..+. ..|++|.... ......|+|+++++|..
T Consensus 83 d~~~~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~-----~~~~~~G~i~l~i~~~~ 132 (133)
T 2ep6_A 83 DGDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKD-----LEQAFKGVIYLEMDLIY 132 (133)
T ss_dssp ETTEEEEECCBCEEEGGGCCSSC--CEECCCBCSC-----TTSCCSSEEEEEEEEEE
T ss_pred CCCCCCCeeEEEEEEHHHccCCC--ceEEEeecCC-----CCCccceEEEEEEEEEe
Confidence 99889999999999999997754 4677764321 12468899999999864
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=9.1e-21 Score=167.95 Aligned_cols=118 Identities=24% Similarity=0.356 Sum_probs=101.8
Q ss_pred CCCeEEEEEEEEEcCCCCcCCC----------CCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCE
Q 009539 250 RRPVGILHVKVVKAMNLKKKDL----------LGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQA 319 (532)
Q Consensus 250 ~~~~g~L~V~v~~A~~L~~~d~----------~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~ 319 (532)
....|.|+|+|++|++|+++|. .|.+||||++++++++ ..+|+++++|+||+|||+|.|.+.+ .+.
T Consensus 25 ~~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~--~~kT~v~~ktlnP~WNE~F~f~v~~--~~~ 100 (157)
T 2fk9_A 25 MKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVR--VGQTSTKQKTNKPTYNEEFCANVTD--GGH 100 (157)
T ss_dssp CCEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEE--EEECCCCSSCSSCEEEEEEEEEEEE--ECE
T ss_pred ccCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEe--eEEeeecCCCCCCccCcEEEEEcCC--CCE
Confidence 3568999999999999998873 2679999999998654 3589999999999999999999975 468
Q ss_pred EEEEEEEccCCCCCCeeEEEEEeCccCCCC----CCeEEEEecccccccCCCCCCccccEEEEEEEEE
Q 009539 320 VELAVYDWEQVGKHDKMGMNVVPLKELTPE----EPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 383 (532)
Q Consensus 320 L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~----~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~ 383 (532)
|.|+|||+|.+++|++||++.++++++..+ ...+.|++|. ..|+|+++++|.
T Consensus 101 L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~------------~~G~i~l~l~~~ 156 (157)
T 2fk9_A 101 LELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLE------------PEGKVFVVITLT 156 (157)
T ss_dssp EEEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECB------------SSCEEEEEEEEC
T ss_pred EEEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECC------------CCcEEEEEEEEE
Confidence 999999999999999999999999998754 5678898871 389999999874
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.8e-20 Score=162.13 Aligned_cols=118 Identities=25% Similarity=0.399 Sum_probs=101.3
Q ss_pred CeEEEEEEEEEcCCCCcCCCCCC-----------CCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEE
Q 009539 252 PVGILHVKVVKAMNLKKKDLLGA-----------SDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAV 320 (532)
Q Consensus 252 ~~g~L~V~v~~A~~L~~~d~~g~-----------~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L 320 (532)
..|.|+|+|++|++|++.|..++ +||||++++++.. ..+|+++.+|.||+|||+|.|.+.+. +.|
T Consensus 4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~--~~~T~~~~~t~nP~WnE~f~f~v~~~--~~L 79 (136)
T 1gmi_A 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSR--IGQTATKQKTNSPAWHDEFVTDVCNG--RKI 79 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEE--EEECCCCSSCSSCEEEEEEEEEEEEE--CEE
T ss_pred cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeE--eeeeeEECCCcCCccCCEEEEEecCC--CEE
Confidence 46899999999999998886554 9999999997543 35899999999999999999999764 899
Q ss_pred EEEEEEccCCCCCCeeEEEEEeCccCCCCC--CeEEEEecccccccCCCCCCccccEEEEEEEEEEc
Q 009539 321 ELAVYDWEQVGKHDKMGMNVVPLKELTPEE--PSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF 385 (532)
Q Consensus 321 ~v~v~d~d~~~~d~~iG~~~i~l~~l~~~~--~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 385 (532)
.|+|||+|..++|++||++.+++.++..+. ..+.|+++ ...|+|+++++|.+.
T Consensus 80 ~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L------------~~~G~i~l~l~~~~~ 134 (136)
T 1gmi_A 80 ELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDL------------EPEGKVYVIIDLSGS 134 (136)
T ss_dssp EEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEEC------------BSSCEEEEEEEEEEE
T ss_pred EEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEc------------CCCeEEEEEEEEEec
Confidence 999999999999999999999999998753 23678765 248999999999863
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-19 Score=164.98 Aligned_cols=130 Identities=33% Similarity=0.544 Sum_probs=101.0
Q ss_pred CCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcC---CceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEE
Q 009539 250 RRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKL---PSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYD 326 (532)
Q Consensus 250 ~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~---~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d 326 (532)
....|.|+|+|++|++|+.++..|++||||++++.+... ..++|++++++.||+|||+|.|.+... ...|.|+|||
T Consensus 4 ~~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~L~~~V~d 82 (176)
T 3m7f_B 4 NDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQ-RHRILFEVFD 82 (176)
T ss_dssp CTTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTT-TCEEEEEEEE
T ss_pred CCCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCC-CCEEEEEEEE
Confidence 346899999999999999999999999999999986432 346999999999999999999999753 5799999999
Q ss_pred ccCCCCCCeeEEEEEeCccCCCCCCe-E-----EEEecccccccCCCCCCccccEEEEEEEEEEc
Q 009539 327 WEQVGKHDKMGMNVVPLKELTPEEPS-V-----KTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF 385 (532)
Q Consensus 327 ~d~~~~d~~iG~~~i~l~~l~~~~~~-~-----~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 385 (532)
++.+++|++||++.++|.++..+... + .|+.|.... ...+..|+|+++++|.|.
T Consensus 83 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~-----~~~~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 83 ENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRS-----HKSRVKGYLRLKMTYLPK 142 (176)
T ss_dssp CC----CEEEEEEEEESCSCCBC------CCCCEEEECBCSS-----TTCCCCSEEEEEEEECC-
T ss_pred CCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccC-----CCCccCEEEEEEEEEEeC
Confidence 99999999999999999999876433 1 577764321 135578999999999997
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-19 Score=158.67 Aligned_cols=122 Identities=25% Similarity=0.430 Sum_probs=103.7
Q ss_pred CCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCC
Q 009539 251 RPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQV 330 (532)
Q Consensus 251 ~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~ 330 (532)
...|.|+|+|++|++|+..|..|.+||||+++++++. ++|++++++.||+|||+|.|.+..+ .+.|.++|||+|..
T Consensus 14 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~d~d~~ 89 (148)
T 3kwu_A 14 KWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTK---KRTKTIYGNLNPVWEENFHFECHNS-SDRIKVRVLDEDDD 89 (148)
T ss_dssp -CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEE---EECCCCCSCSSCEEEEEEEEEECST-TCEEEEEEEECCCS
T ss_pred ccccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEE---EECCccCCCCCCCcccEEEEEecCC-CCEEEEEEEECCCC
Confidence 3579999999999999999999999999999997543 5999999999999999999999775 47999999999975
Q ss_pred -----------CCCCeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEE
Q 009539 331 -----------GKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 383 (532)
Q Consensus 331 -----------~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~ 383 (532)
++|++||++.+++.++. .....|++|.+. .......|+|+++++|.
T Consensus 90 ~~~~~~~~~~~~~~~~lG~~~i~l~~l~--~~~~~w~~L~~~-----~~~~~~~G~i~l~l~~e 146 (148)
T 3kwu_A 90 IKSRVKQRFKRESDDFLGQTIIEVRTLS--GEMDVWYNLDKR-----TDKSAVSGAIRLHISVE 146 (148)
T ss_dssp HHHHHHTTTSSCSSEEEEEEEEEGGGCC--SEEEEEEECBCS-----STTCCCCCEEEEEEEEE
T ss_pred ccccccccccCCCCccEEEEEEEHHHCc--CCCCEEEEcccC-----CCCCCCceEEEEEEEEE
Confidence 78999999999999994 345678877432 11245789999999985
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-19 Score=159.45 Aligned_cols=113 Identities=16% Similarity=0.255 Sum_probs=99.8
Q ss_pred CCceEEEEEEeeeecCCCC-------------CCCCCEEEEEEcCee-EEEeeecCCCCCcccceEEEEecCCCCCCeEE
Q 009539 409 AGGGLLVVIVHEAQDVEGK-------------HHTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLH 474 (532)
Q Consensus 409 ~~~g~L~v~i~~a~~L~~~-------------~~~dpyv~v~~~~~~-~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~ 474 (532)
...|.|+|+|++|+||+.. +.+||||++++++++ .||+++++|.||+|||.|+|.+.+. ..|.
T Consensus 26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~~---~~L~ 102 (157)
T 2fk9_A 26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTDG---GHLE 102 (157)
T ss_dssp CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE---CEEE
T ss_pred cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCCC---CEEE
Confidence 4589999999999999853 358999999998876 5999999999999999999999753 5899
Q ss_pred EEEEEccccccCCCCCceeEEEEEechhhhcc----ceeceEEEeCCCCCeEEEEEEEEE
Q 009539 475 VEVCSVSSRIGLLHPKETLGYIDINLSDVVSN----KRINEKYHLIDSKNGRIQIELQWR 530 (532)
Q Consensus 475 v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~----~~~~~~~~L~~~~~G~i~l~~~w~ 530 (532)
++|||++. ++.|++||++.|+|+++..+ ...+.||+|.. +|+|+|+++|.
T Consensus 103 ~~V~D~d~----~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~--~G~i~l~l~~~ 156 (157)
T 2fk9_A 103 LAVFHETP----LGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP--EGKVFVVITLT 156 (157)
T ss_dssp EEEEECCS----SSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS--SCEEEEEEEEC
T ss_pred EEEEECCC----CCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCC--CcEEEEEEEEE
Confidence 99999875 67899999999999999876 56789999964 89999999985
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=6e-19 Score=154.43 Aligned_cols=120 Identities=23% Similarity=0.485 Sum_probs=104.6
Q ss_pred CCceEEEEEEeeeecCCCC--CCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCC--CCCeEEEEEEEccccc
Q 009539 409 AGGGLLVVIVHEAQDVEGK--HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPP--TNDRLHVEVCSVSSRI 484 (532)
Q Consensus 409 ~~~g~L~v~i~~a~~L~~~--~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~--~~~~l~v~V~d~~~~~ 484 (532)
...|.|.|+|++|+||+.. +.+||||++++++++++|++++++.||+|||.|+|.+.... ....|.|+|||++.
T Consensus 4 ~~~g~L~v~v~~a~~L~~~~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~-- 81 (140)
T 2dmh_A 4 GSSGMLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFET-- 81 (140)
T ss_dssp CBCCEEEEEEEEEESCCCCSSSCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTC--
T ss_pred CCCcEEEEEEEEeeCCCCCCCCCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCC--
Confidence 3578999999999999864 58999999999999999999999999999999999997542 24689999999986
Q ss_pred cCCCCCceeEEEEEechhhhccceeceEEE---eCCCC----CeEEEEEEEEEeC
Q 009539 485 GLLHPKETLGYIDINLSDVVSNKRINEKYH---LIDSK----NGRIQIELQWRTA 532 (532)
Q Consensus 485 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~---L~~~~----~G~i~l~~~w~p~ 532 (532)
++.|++||++.++|.++..+.....||+ |.+.. .|+|+++++|.|.
T Consensus 82 --~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p~ 134 (140)
T 2dmh_A 82 --IGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDPP 134 (140)
T ss_dssp --SSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEECCC
T ss_pred --CCCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCCCEEEEEEEEECC
Confidence 5789999999999999988777788988 65532 4999999999984
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=3.8e-19 Score=152.70 Aligned_cols=116 Identities=18% Similarity=0.406 Sum_probs=102.5
Q ss_pred ceEEEEEEeeeecCCCC------CCCCCEEEEEEcC---eeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcc
Q 009539 411 GGLLVVIVHEAQDVEGK------HHTNPYARILFRG---EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVS 481 (532)
Q Consensus 411 ~g~L~v~i~~a~~L~~~------~~~dpyv~v~~~~---~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~ 481 (532)
.|.|.|+|++|++|+.. +.+||||++++++ +.+||++++++.||+|||.|.|.+... ....|.++|||++
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~~l~i~V~d~d 80 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPN-QENVLEITLMDAN 80 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTT-SCCEEEEEEEECC
T ss_pred CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCC-CCCEEEEEEEECC
Confidence 68999999999999962 6899999999986 678999999999999999999999654 4568999999998
Q ss_pred ccccCCCCCceeEEEEEechhhhccceeceEEEeCCCCCeEEEEEEEEEeC
Q 009539 482 SRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQWRTA 532 (532)
Q Consensus 482 ~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~w~p~ 532 (532)
. + +|++||++.++|+++..+.....||+|...+.|.|+++++..|+
T Consensus 81 ~----~-~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~g~i~~~le~~~~ 126 (126)
T 1rlw_A 81 Y----V-MDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEVASS 126 (126)
T ss_dssp S----S-CCEEEEEEEEEGGGSCTTCEEEEEEEETTTEEEEEEEEEECCCC
T ss_pred C----C-CCceeEEEEEEHHHccCCCcEEEEEEcCCCceEEEEEEEEeCCC
Confidence 5 3 48899999999999988888889999998778999999887663
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=99.80 E-value=5.4e-19 Score=153.09 Aligned_cols=125 Identities=23% Similarity=0.439 Sum_probs=101.0
Q ss_pred CeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCC
Q 009539 252 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVG 331 (532)
Q Consensus 252 ~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~ 331 (532)
....|+|+|++|++|+.+|..|.+||||++++++.. ..++|+++++|+||+|||+|.|.+... +.|.|+|||+|..+
T Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~--~~l~~~v~d~d~~~ 79 (132)
T 3pyc_A 3 EFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSG-QCHSTDTVKNTLDPKWNQHYDLYVGKT--DSITISVWNHKKIH 79 (132)
T ss_dssp SEEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTC-CEEECCCCSSCSSCEEEEEEEEEEETT--CCEEEEEEEGGGTT
T ss_pred CeEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCC-ceEECCccCCCCCCCccCEEEEEeCCC--CEEEEEEEECCCCC
Confidence 456899999999999999999999999999997643 457999999999999999999999765 45999999999887
Q ss_pred C---CCeeEEEEEeCccCC-CCCCeEEEEecccccccCCCCCCccccEEEEEEEE
Q 009539 332 K---HDKMGMNVVPLKELT-PEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIY 382 (532)
Q Consensus 332 ~---d~~iG~~~i~l~~l~-~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~ 382 (532)
+ |++||++.+++.++. .......+++|... .+ .......|+|++++++
T Consensus 80 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~-~~--~~~~~~~G~i~v~l~~ 131 (132)
T 3pyc_A 80 KKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKL-NP--SDTDAVRGQIVVSLQT 131 (132)
T ss_dssp SSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCS-ST--TCCCCCCSEEEEEEEE
T ss_pred CCCCCCceEEEEEeHHHhhcccccCcEEEeeeec-CC--CCCCceeEEEEEEEEc
Confidence 6 899999999999883 23334466776432 11 1224679999999875
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-18 Score=150.98 Aligned_cols=118 Identities=20% Similarity=0.420 Sum_probs=103.1
Q ss_pred CCceEEEEEEeeeecCCCC---CCCCCEEEEEEcCeeEEEeeec-CCCCCcccceEEEEecCCCCCCeEEEEEEEccccc
Q 009539 409 AGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVK-KNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRI 484 (532)
Q Consensus 409 ~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~~~~kT~vv~-~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~ 484 (532)
...|.|.|+|++|++|+.. +.+||||++++++++++|++++ ++.||+|||+|+|.+.+ ....|.|+|||++.
T Consensus 7 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~--~~~~l~~~V~d~~~-- 82 (136)
T 1wfj_A 7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE--GTTELKAKIFDKDV-- 82 (136)
T ss_dssp CCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEES--SCCEEEEEECCSSS--
T ss_pred CCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECC--CCCEEEEEEEECCC--
Confidence 4689999999999999874 5799999999999999999998 89999999999999986 35689999999985
Q ss_pred cCCCCCceeEEEEEechhhhc-cceeceEEEeCC--CCCeEEEEEEEEEeC
Q 009539 485 GLLHPKETLGYIDINLSDVVS-NKRINEKYHLID--SKNGRIQIELQWRTA 532 (532)
Q Consensus 485 ~~~~~d~~lG~~~i~L~~l~~-~~~~~~~~~L~~--~~~G~i~l~~~w~p~ 532 (532)
+++|++||++.++|.++.. .....+||+|.. ...|+|+++++|.|.
T Consensus 83 --~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~G~i~l~l~~~p~ 131 (136)
T 1wfj_A 83 --GTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKPS 131 (136)
T ss_dssp --CTTTCCSEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEEC
T ss_pred --CCCCceEEEEEEEHHHhccCCCCCcEEEEeecCCccCEEEEEEEEEEeC
Confidence 6789999999999999965 445678999962 236999999999984
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.9e-19 Score=154.24 Aligned_cols=112 Identities=34% Similarity=0.508 Sum_probs=98.1
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeC---CCCCEEEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD---PESQAVELAVY 325 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~---~~~~~L~v~v~ 325 (532)
+....+.|+|+|++|++|+.++..|.+||||++++.+.....++|++++++.||+|||+|.|.+.. .....|.|+||
T Consensus 21 y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~ 100 (141)
T 2d8k_A 21 YNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVL 100 (141)
T ss_dssp ECSSSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEE
T ss_pred EeCCCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEE
Confidence 444678999999999999999989999999999997654456799999999999999999998532 23578999999
Q ss_pred EccCCCCCCeeEEEEEeCccCCCCCCeEEEEeccc
Q 009539 326 DWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLK 360 (532)
Q Consensus 326 d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~ 360 (532)
|++..++|++||++.+++.++..+.....|++|.+
T Consensus 101 d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 135 (141)
T 2d8k_A 101 DYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKP 135 (141)
T ss_dssp ECCSSSSCEEEEEEEEETTTSCTTSCEEEEECCEE
T ss_pred ECCCCCCCcEEEEEEEEhhhhcCCCCccEEEECcC
Confidence 99999999999999999999998888889998854
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-19 Score=160.52 Aligned_cols=111 Identities=14% Similarity=0.153 Sum_probs=95.2
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeC---CcCCceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITE---DKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELA 323 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~---~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~ 323 (532)
+....+.|+|+|++|+||+.+|..|.+||||++++.+ .....+||+++++|+||+|||+|.|.+... ....|.|+
T Consensus 38 y~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~ 117 (155)
T 2z0u_A 38 YDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVD 117 (155)
T ss_dssp EETTTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEE
T ss_pred EcCCCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEE
Confidence 3445689999999999999999999999999999986 222357999999999999999999998642 25689999
Q ss_pred EEEccCCCCCCeeEEEEEeCccCCC-CCCeEEEEecc
Q 009539 324 VYDWEQVGKHDKMGMNVVPLKELTP-EEPSVKTLDLL 359 (532)
Q Consensus 324 v~d~d~~~~d~~iG~~~i~l~~l~~-~~~~~~~l~l~ 359 (532)
|||+|..+++++||++.++|.++.. +.....|++|.
T Consensus 118 V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~ 154 (155)
T 2z0u_A 118 VCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLL 154 (155)
T ss_dssp EEEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred EEECCCCCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence 9999999999999999999999964 56677888763
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=8.1e-19 Score=154.20 Aligned_cols=111 Identities=33% Similarity=0.498 Sum_probs=98.7
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYD 326 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d 326 (532)
+....+.|.|+|++|++|+..+..|.+||||++++.+.....++|++++++.||+|||+|.|.+... ....|.|+|||
T Consensus 29 y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d 108 (143)
T 3f04_A 29 YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYD 108 (143)
T ss_dssp EETTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEE
T ss_pred EeCCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEe
Confidence 4456789999999999999999889999999999976554567999999999999999999998643 35799999999
Q ss_pred ccCCCCCCeeEEEEEeCccCCCCCCeEEEEecc
Q 009539 327 WEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 359 (532)
Q Consensus 327 ~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~ 359 (532)
++..++|++||++.++|.++..+.....|++|.
T Consensus 109 ~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 141 (143)
T 3f04_A 109 FDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141 (143)
T ss_dssp CCSSSCCEEEEEEEEEGGGCCTTSCEEEEEECB
T ss_pred CCCCCCCceEEEEEEEHHHccCCCCcceEEECc
Confidence 999999999999999999999988888999874
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-18 Score=155.12 Aligned_cols=111 Identities=33% Similarity=0.498 Sum_probs=98.3
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYD 326 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d 326 (532)
+....+.|.|+|++|++|+..+..|.+||||++++.+.....++|++++++.||+|||+|.|.+... ....|.|+|||
T Consensus 37 y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d 116 (152)
T 1rsy_A 37 YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYD 116 (152)
T ss_dssp EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEE
T ss_pred EeCCCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEE
Confidence 4456789999999999999999889999999999976544567999999999999999999988642 35799999999
Q ss_pred ccCCCCCCeeEEEEEeCccCCCCCCeEEEEecc
Q 009539 327 WEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 359 (532)
Q Consensus 327 ~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~ 359 (532)
++..++|++||++.+++.++..+.....|++|.
T Consensus 117 ~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 149 (152)
T 1rsy_A 117 FDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 149 (152)
T ss_dssp CCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECB
T ss_pred CCCCCCCcEEEEEEEEchhccCCCCcceEEECC
Confidence 999999999999999999998888888999874
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-18 Score=157.88 Aligned_cols=125 Identities=18% Similarity=0.252 Sum_probs=102.4
Q ss_pred CCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCC
Q 009539 251 RPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQV 330 (532)
Q Consensus 251 ~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~ 330 (532)
...+.|+|+|++|++|+..+..+.+||||++++++ ..++|+++++|+||+|||+|.|.+.. .+.|.|+|||+|.+
T Consensus 33 ~~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~---~~~kT~v~~~tlnP~Wne~f~f~v~~--~~~L~~~V~D~d~~ 107 (173)
T 2nq3_A 33 TMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDG---QSKKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTL 107 (173)
T ss_dssp SCCEEEEEEEEEEEECCCC--CCCCCEEEEEEETT---EEEECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSS
T ss_pred CCceEEEEEEEEeECCCCcccCCCCCeEEEEEECC---EEeEccccCCCCCCeECCEEEEEeCC--CCEEEEEEEECCCC
Confidence 35789999999999999444445699999999987 34699999999999999999999853 78999999999999
Q ss_pred CCCCeeEEEEEeCccCCCCC-----CeEEEEecccccccCCCCCCccccEEEEEEEEEEc
Q 009539 331 GKHDKMGMNVVPLKELTPEE-----PSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF 385 (532)
Q Consensus 331 ~~d~~iG~~~i~l~~l~~~~-----~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 385 (532)
++|++||++.+++.++..+. ....|++|... ..+....|+|+++++|.+.
T Consensus 108 ~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~-----~~~~~~~G~L~v~l~~l~~ 162 (173)
T 2nq3_A 108 KSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD-----KEPTETIGDLSICLDGLQL 162 (173)
T ss_dssp SCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEES-----SCTTSEEEEEEEEEESEEC
T ss_pred CCCceEEEEEEEHHHhcccCCCCcceeEEEEECccC-----CCCCcccEEEEEEEeeeec
Confidence 99999999999999986432 12567777542 1135678999999999987
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.5e-18 Score=149.25 Aligned_cols=108 Identities=25% Similarity=0.364 Sum_probs=94.3
Q ss_pred CCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCC--cCCceeeEeeCCCCCceeecEEEEE-eeCC--CCCEEEEEEE
Q 009539 251 RPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFT-VRDP--ESQAVELAVY 325 (532)
Q Consensus 251 ~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~-v~~~--~~~~L~v~v~ 325 (532)
...+.|.|+|++|++|+. +..|.+||||++++.+. ....++|+++++|.||+|||+|.|. +... ....|.|+||
T Consensus 17 ~~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~ 95 (134)
T 2b3r_A 17 YRNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVL 95 (134)
T ss_dssp EETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEE
T ss_pred ecCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEE
Confidence 356899999999999997 77789999999999543 3446799999999999999999999 7532 4579999999
Q ss_pred EccCCCCCCeeEEEEEeCccCCCCCCeEEEEecc
Q 009539 326 DWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 359 (532)
Q Consensus 326 d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~ 359 (532)
|+|..+++++||++.++|.++..+.....|++|.
T Consensus 96 d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~ 129 (134)
T 2b3r_A 96 SAESLRENFFLGGITLPLKDFNLSKETVKWYQLT 129 (134)
T ss_dssp ECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECB
T ss_pred ECCCCCCCcEEEEEEEEhhhccCCCCcceeEECC
Confidence 9999999999999999999999888888999884
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=6.2e-18 Score=147.51 Aligned_cols=121 Identities=17% Similarity=0.140 Sum_probs=102.4
Q ss_pred CccccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCCCCCCCEEEEEEc---Ce-eEEE
Q 009539 370 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGKHHTNPYARILFR---GE-ERKT 445 (532)
Q Consensus 370 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~~~~dpyv~v~~~---~~-~~kT 445 (532)
....|+|++++.|.+ ..+.|.|+|++|++....+.+||||++++. ++ .+||
T Consensus 9 ~~~~G~l~~sl~y~~-------------------------~~~~L~V~v~~a~~~d~~g~sDPyv~v~l~~~~~~~~~kT 63 (138)
T 1wfm_A 9 WNQAPKLHYCLDYDC-------------------------QKAELFVTRLEAVTSNHDGGCDCYVQGSVANRTGSVEAQT 63 (138)
T ss_dssp CSSCCEEEEEEEEET-------------------------TTTEEEEEEEEEECCCCSSCCCEEEEEEEEETTEEEEEEC
T ss_pred CCcceEEEEEEEEeC-------------------------CCCEEEEEEEEEEcCCCCCCcceEEEEEEEcCCCcccEec
Confidence 457899999999985 378999999999976666889999999994 22 4699
Q ss_pred eeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCC
Q 009539 446 KHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK 519 (532)
Q Consensus 446 ~vv~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~ 519 (532)
++++++.||+|||+|.|.+..... ...|.++|||++. +++|++||++.++|.++.......+||+|....
T Consensus 64 ~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d~----~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~~ 134 (138)
T 1wfm_A 64 ALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDR----FSRHSVAGELRLGLDGTSVPLGAAQWGELKTSG 134 (138)
T ss_dssp CCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCS----SCTTSCSEEEEEESSSSSSCTTCCEEEECCCCS
T ss_pred ccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECCC----CCCCcEEEEEEEEcccccCcccccceeeCcCCC
Confidence 999999999999999999875422 3589999999986 678999999999999987666678999998653
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.9e-18 Score=152.48 Aligned_cols=124 Identities=23% Similarity=0.389 Sum_probs=101.8
Q ss_pred CCccccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC--CCCCCEEEEEEcC-----e
Q 009539 369 NEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK--HHTNPYARILFRG-----E 441 (532)
Q Consensus 369 ~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~--~~~dpyv~v~~~~-----~ 441 (532)
.....|++.++++|.+. .+.|.|+|++|+||+.. +.+||||++++.. .
T Consensus 9 ~~~~~G~~~lsL~y~~~-------------------------~~~L~V~v~~a~~L~~~d~g~~Dpyv~v~l~~~~~~~~ 63 (153)
T 3fbk_A 9 SHKVQGAGQLRLSIDAQ-------------------------DRVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLR 63 (153)
T ss_dssp ----CCCCEEEEEEEES-------------------------SSEEEEEEEEEESCCCCSSSCCCEEEEEEEESCSCCTT
T ss_pred ccCCCCEEEEEEEEECC-------------------------CCEEEEEEEEeeCCCCCCCCCCCEEEEEEEEcCCCCcc
Confidence 36789999999999974 78999999999999864 6799999999943 4
Q ss_pred eEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCCC-CceeEEEEEechhhhc-cceeceEEEeCCCC
Q 009539 442 ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP-KETLGYIDINLSDVVS-NKRINEKYHLIDSK 519 (532)
Q Consensus 442 ~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~-d~~lG~~~i~L~~l~~-~~~~~~~~~L~~~~ 519 (532)
+++|++++++.||+|||+|.|.+........|.|+|||++. ++. |++||++.++|+++.. +....+||+|....
T Consensus 64 ~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~----~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~~ 139 (153)
T 3fbk_A 64 HQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRAS----QSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEH 139 (153)
T ss_dssp CEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEECCS----SGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCTT
T ss_pred EEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEeCCC----CCCCCcEEEEEEEEHHHhcCCCCccccEEECCChh
Confidence 57999999999999999999999543344579999999985 455 8999999999999985 66778999998765
Q ss_pred Ce
Q 009539 520 NG 521 (532)
Q Consensus 520 ~G 521 (532)
.|
T Consensus 140 ~g 141 (153)
T 3fbk_A 140 LG 141 (153)
T ss_dssp GG
T ss_pred hc
Confidence 43
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=7.2e-18 Score=149.91 Aligned_cols=118 Identities=22% Similarity=0.402 Sum_probs=98.5
Q ss_pred CCCceEEEEEEeeeecCCCC---CCCCCEEEEEEcC------eeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEE
Q 009539 408 PAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG------EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVC 478 (532)
Q Consensus 408 ~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~------~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~ 478 (532)
....+.|+|+|++|++|+.. +.+||||++++.+ ..++|++++++.||+|||.|.|.+... ...|.|+||
T Consensus 16 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~l~~~V~ 93 (153)
T 3b7y_A 16 EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQ--QHRLLFEVF 93 (153)
T ss_dssp CTTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTT--TCEEEEEEE
T ss_pred CCCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCC--CCEEEEEEE
Confidence 34689999999999999863 5799999999974 456999999999999999999999863 468999999
Q ss_pred EccccccCCCCCceeEEEEEechhhhcccee------ceEEEeCCC-----CCeEEEEEEEEEe
Q 009539 479 SVSSRIGLLHPKETLGYIDINLSDVVSNKRI------NEKYHLIDS-----KNGRIQIELQWRT 531 (532)
Q Consensus 479 d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~------~~~~~L~~~-----~~G~i~l~~~w~p 531 (532)
|++. ++.|++||++.++|+++...... .+||+|... ..|+|+++++|.|
T Consensus 94 d~d~----~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~P 153 (153)
T 3b7y_A 94 DENR----LTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP 153 (153)
T ss_dssp ECCS----SSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred ECCC----CcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEeC
Confidence 9985 67899999999999999875432 589999643 3699999999987
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=5.1e-18 Score=148.09 Aligned_cols=111 Identities=23% Similarity=0.428 Sum_probs=94.0
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCC-CCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEE-eeCC--CCCEEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLL-GASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFT-VRDP--ESQAVELAV 324 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~-g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~-v~~~--~~~~L~v~v 324 (532)
+....+.|.|+|++|++|+.+|.. |.+||||++++.+.....++|++++++.||+|||+|.|. +... ....|.|+|
T Consensus 17 y~~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V 96 (138)
T 1ugk_A 17 YNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTI 96 (138)
T ss_dssp EEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEE
T ss_pred EECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEE
Confidence 344678999999999999999985 899999999998654456799999999999999999996 5432 246899999
Q ss_pred EEccCCCCCCeeEEEEEeCccCCCCCCe-EEEEecc
Q 009539 325 YDWEQVGKHDKMGMNVVPLKELTPEEPS-VKTLDLL 359 (532)
Q Consensus 325 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~-~~~l~l~ 359 (532)
||+|..++|++||++.++|.++..+... ..|+++.
T Consensus 97 ~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~ 132 (138)
T 1ugk_A 97 LSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREII 132 (138)
T ss_dssp EEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECB
T ss_pred EECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhh
Confidence 9999999999999999999999876544 4567764
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=5.7e-18 Score=146.78 Aligned_cols=115 Identities=25% Similarity=0.407 Sum_probs=100.9
Q ss_pred CCceEEEEEEeeeecCCCC---CCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccccc
Q 009539 409 AGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIG 485 (532)
Q Consensus 409 ~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~ 485 (532)
...|.|.|+|++|++|+.. +.+||||++++++++++|++++++.||+|||.|.|.+.+. ...|.++|||++.
T Consensus 10 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~--~~~l~i~V~d~d~--- 84 (133)
T 2ep6_A 10 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDI--HDVLEVTVFDEDG--- 84 (133)
T ss_dssp CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCT--TCEEEEEEEEEET---
T ss_pred CCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCC--CCEEEEEEEECCC---
Confidence 4689999999999999863 5799999999999999999999999999999999999864 4689999999986
Q ss_pred CCCCCceeEEEEEechhhhccceeceEEEeCCC-----CCeEEEEEEEEEe
Q 009539 486 LLHPKETLGYIDINLSDVVSNKRINEKYHLIDS-----KNGRIQIELQWRT 531 (532)
Q Consensus 486 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~-----~~G~i~l~~~w~p 531 (532)
++.|++||++.++|.++..+. .+||+|.+. ..|+|+++++|..
T Consensus 85 -~~~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~~~~~~~G~i~l~i~~~~ 132 (133)
T 2ep6_A 85 -DKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQAFKGVIYLEMDLIY 132 (133)
T ss_dssp -TEEEEECCBCEEEGGGCCSSC--CEECCCBCSCTTSCCSSEEEEEEEEEE
T ss_pred -CCCCCeeEEEEEEHHHccCCC--ceEEEeecCCCCCccceEEEEEEEEEe
Confidence 567899999999999986644 589999743 4699999999864
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.5e-18 Score=151.03 Aligned_cols=120 Identities=20% Similarity=0.312 Sum_probs=103.3
Q ss_pred CccccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCC----CCCCCCEEEEEEcC-----
Q 009539 370 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEG----KHHTNPYARILFRG----- 440 (532)
Q Consensus 370 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~----~~~~dpyv~v~~~~----- 440 (532)
....|+|.+++.|.+. .+.|.|+|++|+||+. .+.+||||++++..
T Consensus 6 ~~~~G~l~~sl~y~~~-------------------------~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~ 60 (148)
T 3fdw_A 6 IFVTGRIAFSLKYEQQ-------------------------TQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQ 60 (148)
T ss_dssp CCCCCEEEEEEEEETT-------------------------TTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGG
T ss_pred CccceEEEEEEEEeCC-------------------------CCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCccc
Confidence 5678999999999863 7899999999999984 36799999999963
Q ss_pred eeEEEeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCC
Q 009539 441 EERKTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS 518 (532)
Q Consensus 441 ~~~kT~vv~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 518 (532)
.+++|++++++.||+|||.|.|.+..... ...|.|+|||++. ++.|++||++.++|+++.......+||+|...
T Consensus 61 ~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~d~----~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 135 (148)
T 3fdw_A 61 GKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGR----FGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGK 135 (148)
T ss_dssp GEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEECG----GGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC
T ss_pred CccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEECCC----CcCCcEEEEEEEEcccccccCCccceEECcCc
Confidence 36799999999999999999999876422 3479999999986 57899999999999999877777899999765
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=6.5e-18 Score=147.04 Aligned_cols=113 Identities=16% Similarity=0.307 Sum_probs=98.6
Q ss_pred CceEEEEEEeeeecCCCC---CC-----------CCCEEEEEEcCee-EEEeeecCCCCCcccceEEEEecCCCCCCeEE
Q 009539 410 GGGLLVVIVHEAQDVEGK---HH-----------TNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLH 474 (532)
Q Consensus 410 ~~g~L~v~i~~a~~L~~~---~~-----------~dpyv~v~~~~~~-~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~ 474 (532)
..|.|+|+|++|+||+.. +. +||||++++++.. .+|+++++|.||+|||.|+|.+.+. ..|.
T Consensus 4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~---~~L~ 80 (136)
T 1gmi_A 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG---RKIE 80 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE---CEEE
T ss_pred cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC---CEEE
Confidence 368999999999999863 22 8999999998876 4999999999999999999999764 6899
Q ss_pred EEEEEccccccCCCCCceeEEEEEechhhhccc--eeceEEEeCCCCCeEEEEEEEEEe
Q 009539 475 VEVCSVSSRIGLLHPKETLGYIDINLSDVVSNK--RINEKYHLIDSKNGRIQIELQWRT 531 (532)
Q Consensus 475 v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~--~~~~~~~L~~~~~G~i~l~~~w~p 531 (532)
++|||++. +++|++||++.++|+++..+. ..+.|++|. +.|+|+++++|.+
T Consensus 81 ~~V~d~d~----~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~--~~G~i~l~l~~~~ 133 (136)
T 1gmi_A 81 LAVFHDAP----IGYDDFVANCTIQFEELLQNGSRHFEDWIDLE--PEGKVYVIIDLSG 133 (136)
T ss_dssp EEEEECCS----SSSCEEEEEEEEEHHHHTSTTCSEEEEEEECB--SSCEEEEEEEEEE
T ss_pred EEEEeCCC----CCCCCEEEEEEEEHHHhcccCCCCccEEEEcC--CCeEEEEEEEEEe
Confidence 99999985 678999999999999998753 458899986 4899999999986
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.3e-18 Score=151.93 Aligned_cols=120 Identities=18% Similarity=0.299 Sum_probs=102.6
Q ss_pred CccccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEc---CeeE
Q 009539 370 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR---GEER 443 (532)
Q Consensus 370 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~---~~~~ 443 (532)
....|+|++++.|.+. .+.|.|+|++|+||+.. +.+||||++++. .+.+
T Consensus 25 ~~~~G~l~~~l~y~~~-------------------------~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~ 79 (152)
T 1rsy_A 25 EEKLGKLQYSLDYDFQ-------------------------NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKF 79 (152)
T ss_dssp -CCCCEEEEEEEEETT-------------------------TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCE
T ss_pred CCCceEEEEEEEEeCC-------------------------CCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceE
Confidence 5578999999999863 68999999999999864 579999999994 4567
Q ss_pred EEeeecCCCCCcccceEEEEecCCC-CCCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCC
Q 009539 444 KTKHVKKNRDPRWEEEFQFMLEEPP-TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS 518 (532)
Q Consensus 444 kT~vv~~t~nP~w~e~f~f~v~~~~-~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 518 (532)
||++++++.||+|||.|.|.+.... ....|.|+|||++. ++.|++||++.++|+++..+....+||+|.+.
T Consensus 80 kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~----~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 151 (152)
T 1rsy_A 80 ETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR----FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA 151 (152)
T ss_dssp ECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS----SSCCEEEEEEEEEGGGCCCSSCEEEEEECBCC
T ss_pred eccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCC----CCCCcEEEEEEEEchhccCCCCcceEEECCCC
Confidence 9999999999999999999886421 23689999999985 67899999999999999877778999999764
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.7e-18 Score=149.49 Aligned_cols=122 Identities=27% Similarity=0.486 Sum_probs=101.9
Q ss_pred CccccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEE-----cCe
Q 009539 370 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILF-----RGE 441 (532)
Q Consensus 370 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~-----~~~ 441 (532)
+...|+|++++.|.+. .+.|.|+|++|+||+.. +.+||||++++ ..+
T Consensus 4 ~~~~G~i~~~l~y~~~-------------------------~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~ 58 (141)
T 1v27_A 4 GSSGGQLSIKLWFDKV-------------------------GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKN 58 (141)
T ss_dssp CCCCCEEEEEEEEETT-------------------------TTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSS
T ss_pred CCcccEEEEEEEEeCC-------------------------CCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCc
Confidence 5678999999999863 68999999999999864 57899999999 345
Q ss_pred eEEEeeecCCCCCcccceEEEEecCCC--CCCeEEEEEEEccccccCCCC--CceeEEEEEechhhhccceeceEEEeCC
Q 009539 442 ERKTKHVKKNRDPRWEEEFQFMLEEPP--TNDRLHVEVCSVSSRIGLLHP--KETLGYIDINLSDVVSNKRINEKYHLID 517 (532)
Q Consensus 442 ~~kT~vv~~t~nP~w~e~f~f~v~~~~--~~~~l~v~V~d~~~~~~~~~~--d~~lG~~~i~L~~l~~~~~~~~~~~L~~ 517 (532)
.++|++++++.||+|||.|.|.+.... ....|.|+|||++. ++. +++||++.++|.++.... ..+||+|..
T Consensus 59 ~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~----~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~ 133 (141)
T 1v27_A 59 KRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQAR----VREEESEFLGEILIELETALLDD-EPHWYKLQT 133 (141)
T ss_dssp CCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEBCS----SSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBC
T ss_pred ceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEECCC----CcCCCCceEEEEEEEccccCCCC-CCceEECcc
Confidence 679999999999999999999953221 23589999999986 455 899999999999987654 789999987
Q ss_pred CCCe
Q 009539 518 SKNG 521 (532)
Q Consensus 518 ~~~G 521 (532)
...|
T Consensus 134 ~~~g 137 (141)
T 1v27_A 134 HDSG 137 (141)
T ss_dssp CSSC
T ss_pred cccC
Confidence 6544
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-17 Score=146.49 Aligned_cols=118 Identities=22% Similarity=0.364 Sum_probs=99.4
Q ss_pred CCceEEEEEEeeeecCCCC---CCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccc--
Q 009539 409 AGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSR-- 483 (532)
Q Consensus 409 ~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~-- 483 (532)
...|.|.|+|++|++|+.. +.+||||+++++++.++|++++++.||.|||.|.|.+... .+.|.++|||++..
T Consensus 14 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~--~~~l~~~v~d~d~~~~ 91 (148)
T 3kwu_A 14 KWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNS--SDRIKVRVLDEDDDIK 91 (148)
T ss_dssp -CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECST--TCEEEEEEEECCCSHH
T ss_pred ccccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCC--CCEEEEEEEECCCCcc
Confidence 3579999999999999873 6899999999999999999999999999999999999864 36899999999851
Q ss_pred -----ccCCCCCceeEEEEEechhhhccceeceEEEeCCC-----CCeEEEEEEEEE
Q 009539 484 -----IGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS-----KNGRIQIELQWR 530 (532)
Q Consensus 484 -----~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~-----~~G~i~l~~~w~ 530 (532)
..-.+.|++||++.++|+++ .....+||+|... ..|+|+|++++.
T Consensus 92 ~~~~~~~~~~~~~~lG~~~i~l~~l--~~~~~~w~~L~~~~~~~~~~G~i~l~l~~e 146 (148)
T 3kwu_A 92 SRVKQRFKRESDDFLGQTIIEVRTL--SGEMDVWYNLDKRTDKSAVSGAIRLHISVE 146 (148)
T ss_dssp HHHHTTTSSCSSEEEEEEEEEGGGC--CSEEEEEEECBCSSTTCCCCCEEEEEEEEE
T ss_pred ccccccccCCCCccEEEEEEEHHHC--cCCCCEEEEcccCCCCCCCceEEEEEEEEE
Confidence 00015799999999999998 3456799999742 359999999885
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.9e-18 Score=147.82 Aligned_cols=121 Identities=21% Similarity=0.282 Sum_probs=102.4
Q ss_pred CccccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEc---CeeE
Q 009539 370 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR---GEER 443 (532)
Q Consensus 370 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~---~~~~ 443 (532)
....|+|++++.|.+. .+.|.|+|++|++|+.. +.+||||++++. .+.+
T Consensus 9 ~~~~G~l~~~l~y~~~-------------------------~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~ 63 (141)
T 2d8k_A 9 RENLGRIQFSVGYNFQ-------------------------ESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKL 63 (141)
T ss_dssp CCCCCEEEEEEEECSS-------------------------SCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEE
T ss_pred CceeeEEEEEEEEeCC-------------------------CCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccE
Confidence 4578999999999853 68999999999999874 579999999995 3567
Q ss_pred EEeeecCCCCCcccceEEEEecCC--CCCCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCC
Q 009539 444 KTKHVKKNRDPRWEEEFQFMLEEP--PTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK 519 (532)
Q Consensus 444 kT~vv~~t~nP~w~e~f~f~v~~~--~~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~ 519 (532)
||++++++.||+|||.|.|.+... .....|.|+|||++. ++++++||++.++|.++..+.....||+|....
T Consensus 64 kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~----~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~ 137 (141)
T 2d8k_A 64 ETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDR----FSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSG 137 (141)
T ss_dssp ECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECCS----SSSCEEEEEEEEETTTSCTTSCEEEEECCEECC
T ss_pred eCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECCC----CCCCcEEEEEEEEhhhhcCCCCccEEEECcCCC
Confidence 999999999999999999986321 124589999999986 578999999999999998877788999997653
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-18 Score=152.35 Aligned_cols=121 Identities=22% Similarity=0.488 Sum_probs=101.6
Q ss_pred CccccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEcC-----e
Q 009539 370 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----E 441 (532)
Q Consensus 370 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~-----~ 441 (532)
....|+|++++.|. .+.|.|+|++|+||+.. +.+||||++++.+ .
T Consensus 16 ~~~~G~l~~~l~~~---------------------------~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~ 68 (149)
T 1a25_A 16 MERRGRIYIQAHID---------------------------REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSES 68 (149)
T ss_dssp -CTTCEEEEEEEES---------------------------SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSS
T ss_pred CCcceEEEEEEEec---------------------------CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcc
Confidence 45689999999872 46899999999999864 5789999999973 5
Q ss_pred eEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCCCe
Q 009539 442 ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNG 521 (532)
Q Consensus 442 ~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G 521 (532)
.+||++++++.||+|||+|.|.+........|.|+|||++. ++.|++||++.++|.++... ...+||+|.+...|
T Consensus 69 ~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~----~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~~~~g 143 (149)
T 1a25_A 69 KQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL----TSRNDFMGSLSFGISELQKA-GVDGWFKLLSQEEG 143 (149)
T ss_dssp CEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS----SSCCEEEEEEEEEHHHHTTC-CEEEEEECBCHHHH
T ss_pred eEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCC----CCCCCEEEEEEEEHHHhCcC-ccCCeEEccCCCCC
Confidence 67999999999999999999999764334589999999986 57899999999999999875 46899999875555
Q ss_pred E
Q 009539 522 R 522 (532)
Q Consensus 522 ~ 522 (532)
+
T Consensus 144 ~ 144 (149)
T 1a25_A 144 E 144 (149)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=7.5e-18 Score=145.19 Aligned_cols=115 Identities=27% Similarity=0.484 Sum_probs=94.2
Q ss_pred cccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEE-----cCeeE
Q 009539 372 SRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILF-----RGEER 443 (532)
Q Consensus 372 ~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~-----~~~~~ 443 (532)
..|+|.+++.|.+. .+.|.|+|++|+||+.. +.+||||++++ +...+
T Consensus 3 ~~G~l~~~l~y~~~-------------------------~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~ 57 (129)
T 2bwq_A 3 LSGQLSIKLWFDKV-------------------------GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKR 57 (129)
T ss_dssp CCCEEEEEEEEETT-------------------------TTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEE
T ss_pred eeEEEEEEEEEccC-------------------------CCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcce
Confidence 47999999999863 68999999999999874 57899999999 35678
Q ss_pred EEeeecCCCCCcccceEEEEecCCC--CCCeEEEEEEEccccccCCCC--CceeEEEEEechhhhccceeceEEEeC
Q 009539 444 KTKHVKKNRDPRWEEEFQFMLEEPP--TNDRLHVEVCSVSSRIGLLHP--KETLGYIDINLSDVVSNKRINEKYHLI 516 (532)
Q Consensus 444 kT~vv~~t~nP~w~e~f~f~v~~~~--~~~~l~v~V~d~~~~~~~~~~--d~~lG~~~i~L~~l~~~~~~~~~~~L~ 516 (532)
+|++++++.||+|||+|.|.+.... ....|.++|||++. ++. +++||++.++|.++.... ..+||+|.
T Consensus 58 kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d~d~----~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~Lq 129 (129)
T 2bwq_A 58 RTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQAR----VREEESEFLGEILIELETALLDD-EPHWYKLQ 129 (129)
T ss_dssp ECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC-----------CEEEEEEEEEGGGCCCSS-CEEEEECC
T ss_pred ecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEECCc----CcCcCCceeEEEEEEccccCCCc-CCccEECc
Confidence 9999999999999999999963211 23589999999985 455 899999999999987755 78999984
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-17 Score=147.11 Aligned_cols=119 Identities=18% Similarity=0.301 Sum_probs=102.5
Q ss_pred CccccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEE---cCeeE
Q 009539 370 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILF---RGEER 443 (532)
Q Consensus 370 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~---~~~~~ 443 (532)
....|+|++++.|.+ ..+.|.|+|++|++|+.. +.+||||++++ +.+.+
T Consensus 17 ~~~~G~l~~~l~y~~-------------------------~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~ 71 (143)
T 3f04_A 17 VEKLGKLQYSLDYDF-------------------------QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKF 71 (143)
T ss_dssp CCCCCEEEEEEEEET-------------------------TTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCE
T ss_pred ccCeEEEEEEEEEeC-------------------------CCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccE
Confidence 456899999999985 378999999999999874 58999999999 44578
Q ss_pred EEeeecCCCCCcccceEEEEecCCC-CCCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCC
Q 009539 444 KTKHVKKNRDPRWEEEFQFMLEEPP-TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLID 517 (532)
Q Consensus 444 kT~vv~~t~nP~w~e~f~f~v~~~~-~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~ 517 (532)
+|++++++.||+|||+|.|.+.... ....|.|+|||++. ++.|++||++.++|.++.......+||+|..
T Consensus 72 kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~----~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 142 (143)
T 3f04_A 72 ETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR----FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142 (143)
T ss_dssp ECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS----SSCCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred ECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCC----CCCCceEEEEEEEHHHccCCCCcceEEECcC
Confidence 9999999999999999999986421 23589999999986 6789999999999999988778889999964
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=99.74 E-value=4.6e-18 Score=149.15 Aligned_cols=111 Identities=24% Similarity=0.433 Sum_probs=96.0
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEE-eeCC--CCCEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFT-VRDP--ESQAVELA 323 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~-v~~~--~~~~L~v~ 323 (532)
+....+.|.|+|++|++|+..+..|.+||||++++.+.. ...++|++++++.||+|||+|.|. +... ....|.|+
T Consensus 24 y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~ 103 (142)
T 2chd_A 24 YDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRIS 103 (142)
T ss_dssp EEGGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEE
T ss_pred EeCCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEE
Confidence 334678999999999999999988999999999998632 245799999999999999999998 5322 13689999
Q ss_pred EEEccCCCCCCeeEEEEEeCccCCCCCCeEEEEecc
Q 009539 324 VYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 359 (532)
Q Consensus 324 v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~ 359 (532)
|||++..++|++||++.+++.++..+.....|+.|.
T Consensus 104 V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 139 (142)
T 2chd_A 104 VCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLE 139 (142)
T ss_dssp EEEECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECB
T ss_pred EEECCCCCCCcEEEEEEEEHHHcCCCCccEEEEecc
Confidence 999999999999999999999999988888888873
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=8.4e-18 Score=146.69 Aligned_cols=109 Identities=17% Similarity=0.263 Sum_probs=92.6
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCC-cCCceeeEeeCCCCCceeecEEEEEeeCCC--CCEEEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED-KLPSKKTTVKHKNLNPEWNEEYNFTVRDPE--SQAVELAVY 325 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~-~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~v~ 325 (532)
+....+.|+|+|++|++ +|..|.+||||++++.+. ....++|+++++|+||+|||+|.|.+.... ...|.|+||
T Consensus 21 y~~~~~~L~V~v~~a~~---~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~ 97 (138)
T 1wfm_A 21 YDCQKAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLR 97 (138)
T ss_dssp EETTTTEEEEEEEEEEC---CCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEE
T ss_pred EeCCCCEEEEEEEEEEc---CCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEE
Confidence 44567899999999993 677899999999999642 223469999999999999999999986532 568999999
Q ss_pred EccCCCCCCeeEEEEEeCccCCCCCCeEEEEeccc
Q 009539 326 DWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLK 360 (532)
Q Consensus 326 d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~ 360 (532)
|+|.+++|++||++.++|.++..+.....|++|.+
T Consensus 98 d~d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~ 132 (138)
T 1wfm_A 98 TCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKT 132 (138)
T ss_dssp ECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred ECCCCCCCcEEEEEEEEcccccCcccccceeeCcC
Confidence 99999999999999999999987777788988854
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=4e-18 Score=150.46 Aligned_cols=111 Identities=29% Similarity=0.410 Sum_probs=93.6
Q ss_pred CCCCeEEEEEEEEEcCCCCcC-CC------CCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCC--CCCE
Q 009539 249 YRRPVGILHVKVVKAMNLKKK-DL------LGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQA 319 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~-d~------~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~ 319 (532)
+....+.|.|+|++|++|+.. +. .|.+||||++++.+.....++|++++++.||+|||+|.|.+... ....
T Consensus 21 y~~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~ 100 (147)
T 2enp_A 21 YDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRT 100 (147)
T ss_dssp EETTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSE
T ss_pred EcCCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCE
Confidence 445678999999999999984 43 35899999999986544567999999999999999999998642 2468
Q ss_pred EEEEEEEccCCCCCCeeEEEEEeCccCCCCCCeEEEEecc
Q 009539 320 VELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 359 (532)
Q Consensus 320 L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~ 359 (532)
|.|+|||++.+++|++||++.++|.++........|+.|.
T Consensus 101 L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~ 140 (147)
T 2enp_A 101 LLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALI 140 (147)
T ss_dssp EEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCB
T ss_pred EEEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEee
Confidence 9999999999999999999999999998776667787774
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=5.3e-18 Score=146.16 Aligned_cols=109 Identities=19% Similarity=0.375 Sum_probs=88.0
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEeeC---CCCCEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRD---PESQAVELA 323 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~---~~~~~L~v~ 323 (532)
+....+.|.|+|++|++|+.++..|.+||||++++.+.. ...++|+++++|.||+|||+|.|.+.. .....|.|+
T Consensus 13 y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~ 92 (129)
T 2bwq_A 13 FDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEIT 92 (129)
T ss_dssp EETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEE
T ss_pred EccCCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEE
Confidence 344568999999999999999999999999999996432 345799999999999999999999532 235799999
Q ss_pred EEEccCCCC--CCeeEEEEEeCccCCCCCCeEEEEec
Q 009539 324 VYDWEQVGK--HDKMGMNVVPLKELTPEEPSVKTLDL 358 (532)
Q Consensus 324 v~d~d~~~~--d~~iG~~~i~l~~l~~~~~~~~~l~l 358 (532)
|||++..++ +++||++.+++.++.... ...|++|
T Consensus 93 V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L 128 (129)
T 2bwq_A 93 LWDQARVREEESEFLGEILIELETALLDD-EPHWYKL 128 (129)
T ss_dssp EEEC-------CEEEEEEEEEGGGCCCSS-CEEEEEC
T ss_pred EEECCcCcCcCCceeEEEEEEccccCCCc-CCccEEC
Confidence 999999887 999999999999998654 6778765
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.1e-18 Score=149.31 Aligned_cols=121 Identities=24% Similarity=0.300 Sum_probs=101.7
Q ss_pred CCccccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC----------CCCCCEEEEEE
Q 009539 369 NEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK----------HHTNPYARILF 438 (532)
Q Consensus 369 ~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~----------~~~dpyv~v~~ 438 (532)
.....|+|++++.|.|. .+.|.|+|++|+||+.. +.+||||++++
T Consensus 8 ~~~~~G~l~~~l~y~~~-------------------------~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l 62 (147)
T 2enp_A 8 SKYQLGMLHFSTQYDLL-------------------------HNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICL 62 (147)
T ss_dssp SCCCCCEEEEEEEEETT-------------------------TTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEE
T ss_pred CCCcceEEEEEEEEcCC-------------------------CCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEE
Confidence 45689999999999863 78999999999999863 37999999999
Q ss_pred cC---eeEEEeeecCCCCCcccceEEEEecCCC-CCCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEE
Q 009539 439 RG---EERKTKHVKKNRDPRWEEEFQFMLEEPP-TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYH 514 (532)
Q Consensus 439 ~~---~~~kT~vv~~t~nP~w~e~f~f~v~~~~-~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~ 514 (532)
.. +.++|++++++.||+|||+|.|.+.... ....|.|+|||++. ++++++||++.++|.++........||.
T Consensus 63 ~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~----~~~~~~iG~~~i~l~~l~~~~~~~~w~~ 138 (147)
T 2enp_A 63 LPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDK----FSRHCVIGKVSVPLCEVDLVKGGHWWKA 138 (147)
T ss_dssp ETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEEEEECCST----TCCSCCCEEEEEETTTSCTTTCCCEEEC
T ss_pred EeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEEEEEEECCC----CcCCcEEEEEEEechhcCCCCCccEEEE
Confidence 63 5679999999999999999999986421 12489999999985 6789999999999999977666678888
Q ss_pred eCCC
Q 009539 515 LIDS 518 (532)
Q Consensus 515 L~~~ 518 (532)
|...
T Consensus 139 L~~~ 142 (147)
T 2enp_A 139 LIPS 142 (147)
T ss_dssp CBCC
T ss_pred eecC
Confidence 8754
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-17 Score=150.20 Aligned_cols=118 Identities=21% Similarity=0.392 Sum_probs=95.4
Q ss_pred CCceEEEEEEeeeecCCCC---CCCCCEEEEEEcC------eeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEE
Q 009539 409 AGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG------EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCS 479 (532)
Q Consensus 409 ~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~------~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d 479 (532)
...|.|.|+|++|++|+.. +.+||||++++++ +.++|++++++.||.|||.|.|.+... ...|.|+|||
T Consensus 5 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~--~~~L~~~V~d 82 (176)
T 3m7f_B 5 DDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQ--RHRILFEVFD 82 (176)
T ss_dssp TTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTT--TCEEEEEEEE
T ss_pred CCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCC--CCEEEEEEEE
Confidence 3589999999999999863 6799999999976 567999999999999999999999853 4689999999
Q ss_pred ccccccCCCCCceeEEEEEechhhhcccee-c-----eEEEeCCC-----CCeEEEEEEEEEeC
Q 009539 480 VSSRIGLLHPKETLGYIDINLSDVVSNKRI-N-----EKYHLIDS-----KNGRIQIELQWRTA 532 (532)
Q Consensus 480 ~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~-~-----~~~~L~~~-----~~G~i~l~~~w~p~ 532 (532)
++. ++.|++||++.++|.++...... . +||+|... ..|+|+|++.|.|+
T Consensus 83 ~d~----~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 83 ENR----LTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK 142 (176)
T ss_dssp CC--------CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred CCC----CCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence 985 67899999999999999876432 2 79999743 26999999999984
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.1e-18 Score=148.84 Aligned_cols=111 Identities=27% Similarity=0.334 Sum_probs=93.4
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAV 324 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v 324 (532)
+....+.|.|+|++|++|+.++..| +||||++++.+.. ...++|+++++|.||+|||+|.|.+... ....|.|+|
T Consensus 19 y~~~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V 97 (142)
T 2dmg_A 19 HSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAV 97 (142)
T ss_dssp EETTTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEE
T ss_pred EeCCCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEE
Confidence 3445689999999999999999888 9999999997533 2567999999999999999999998532 246899999
Q ss_pred EEccCCCC--CCeeEEEEEeCccCCCCCCeEEEEeccc
Q 009539 325 YDWEQVGK--HDKMGMNVVPLKELTPEEPSVKTLDLLK 360 (532)
Q Consensus 325 ~d~d~~~~--d~~iG~~~i~l~~l~~~~~~~~~l~l~~ 360 (532)
||++.+++ |++||++.+++.++..+.....|++|..
T Consensus 98 ~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~ 135 (142)
T 2dmg_A 98 KNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTE 135 (142)
T ss_dssp EECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBC
T ss_pred EECCCccccCCcEEEEEEEecccccccccccceeeccC
Confidence 99998763 5799999999999987777777888754
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.1e-18 Score=151.41 Aligned_cols=112 Identities=21% Similarity=0.377 Sum_probs=97.0
Q ss_pred CCCCeEEEEEEEEEcCCCCcCC-CCCCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEeeCCC--CCEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKD-LLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPE--SQAVELA 323 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d-~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~ 323 (532)
+....+.|.|+|++|++|+..+ ..|.+||||++++.+.. ...++|+++++|.||+|||+|.|.+.... ...|.|+
T Consensus 18 y~~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~ 97 (148)
T 3fdw_A 18 YEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFS 97 (148)
T ss_dssp EETTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEE
T ss_pred EeCCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEE
Confidence 4446789999999999999988 57899999999998643 23579999999999999999999986542 4579999
Q ss_pred EEEccCCCCCCeeEEEEEeCccCCCCCCeEEEEeccc
Q 009539 324 VYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLK 360 (532)
Q Consensus 324 v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~ 360 (532)
|||+|..++|++||++.++|.++..+.....|++|.+
T Consensus 98 V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 134 (148)
T 3fdw_A 98 VWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHG 134 (148)
T ss_dssp EEEECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBC
T ss_pred EEECCCCcCCcEEEEEEEEcccccccCCccceEECcC
Confidence 9999999999999999999999987777888998854
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=5e-18 Score=150.84 Aligned_cols=118 Identities=17% Similarity=0.317 Sum_probs=99.3
Q ss_pred CccccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEcC---e--
Q 009539 370 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG---E-- 441 (532)
Q Consensus 370 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~---~-- 441 (532)
....|+|++++.|.+ ..+.|.|+|++|+||+.. +.+||||++++.+ .
T Consensus 26 ~~~~G~l~~sl~y~~-------------------------~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~ 80 (155)
T 2z0u_A 26 AVGATRIQIALKYDE-------------------------KNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTT 80 (155)
T ss_dssp --CCEEEEEEEEEET-------------------------TTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHH
T ss_pred cCCcEEEEEEEEEcC-------------------------CCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCc
Confidence 456899999999985 368999999999999863 6899999999965 2
Q ss_pred -eEEEeeecCCCCCcccceEEEEecCCC-CCCeEEEEEEEccccccCCCCCceeEEEEEechhhhc-cceeceEEEeC
Q 009539 442 -ERKTKHVKKNRDPRWEEEFQFMLEEPP-TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVS-NKRINEKYHLI 516 (532)
Q Consensus 442 -~~kT~vv~~t~nP~w~e~f~f~v~~~~-~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~-~~~~~~~~~L~ 516 (532)
++||+++++|.||+|||+|+|.+.... ....|.++|||++. ++++++||++.++|+++.. .....+||+|.
T Consensus 81 ~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d~d~----~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~ 154 (155)
T 2z0u_A 81 CLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDR----SHLEECLGGAQISLAEVCRSGERSTRWYNLL 154 (155)
T ss_dssp HEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEEECT----TSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred cceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEECCC----CCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence 679999999999999999999986421 13479999999986 6789999999999999964 45678999985
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-17 Score=146.98 Aligned_cols=107 Identities=34% Similarity=0.545 Sum_probs=93.6
Q ss_pred eEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEeeCCC-CCEEEEEEEEccC
Q 009539 253 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPE-SQAVELAVYDWEQ 329 (532)
Q Consensus 253 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~L~v~v~d~d~ 329 (532)
.+.|.|+|++|++|+..+..|.+||||++++.+.. ...++|++++++.||+|||+|.|.+.... ...|.|+|||+|.
T Consensus 30 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~ 109 (149)
T 1a25_A 30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL 109 (149)
T ss_dssp SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCC
Confidence 47899999999999999988999999999998632 34579999999999999999999987532 4689999999999
Q ss_pred CCCCCeeEEEEEeCccCCCCCCeEEEEeccc
Q 009539 330 VGKHDKMGMNVVPLKELTPEEPSVKTLDLLK 360 (532)
Q Consensus 330 ~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~ 360 (532)
.++|++||++.+++.++..+ ....|++|..
T Consensus 110 ~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~ 139 (149)
T 1a25_A 110 TSRNDFMGSLSFGISELQKA-GVDGWFKLLS 139 (149)
T ss_dssp SSCCEEEEEEEEEHHHHTTC-CEEEEEECBC
T ss_pred CCCCCEEEEEEEEHHHhCcC-ccCCeEEccC
Confidence 99999999999999999876 4778888854
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.7e-17 Score=142.62 Aligned_cols=106 Identities=26% Similarity=0.413 Sum_probs=89.1
Q ss_pred ceEEEEEEeeeecCCC--CCCCCCEEEEEE-----cCeeEEEeeecCCCCCcccceEEEE-ecCCC-CCCeEEEEEEEcc
Q 009539 411 GGLLVVIVHEAQDVEG--KHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQFM-LEEPP-TNDRLHVEVCSVS 481 (532)
Q Consensus 411 ~g~L~v~i~~a~~L~~--~~~~dpyv~v~~-----~~~~~kT~vv~~t~nP~w~e~f~f~-v~~~~-~~~~l~v~V~d~~ 481 (532)
.+.|.|+|++|+||+. .+.+||||++++ ...++||++++++.||+|||+|.|. +.... ....|.|+|||++
T Consensus 19 ~~~L~V~V~~a~~L~~~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d~d 98 (134)
T 2b3r_A 19 NGTLFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAE 98 (134)
T ss_dssp TTEEEEEEEEEECCCCTTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEECC
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEECC
Confidence 6899999999999986 367999999999 3456799999999999999999999 65321 2358999999998
Q ss_pred ccccCCCCCceeEEEEEechhhhccceeceEEEeCCCCC
Q 009539 482 SRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKN 520 (532)
Q Consensus 482 ~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~ 520 (532)
. ++++++||++.++|+++..++...+||+|.+.+.
T Consensus 99 ~----~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~~ 133 (134)
T 2b3r_A 99 S----LRENFFLGGITLPLKDFNLSKETVKWYQLTAATY 133 (134)
T ss_dssp S----SSCCEEEEEEEEEGGGSCTTSCEEEEEECBC---
T ss_pred C----CCCCcEEEEEEEEhhhccCCCCcceeEECCCccC
Confidence 5 6789999999999999988777889999987543
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=4.4e-18 Score=149.28 Aligned_cols=119 Identities=19% Similarity=0.382 Sum_probs=100.5
Q ss_pred CccccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEcCe-----
Q 009539 370 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGE----- 441 (532)
Q Consensus 370 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~~----- 441 (532)
....|+|++++.|. .|.|.|+|++|+||+.. +.+||||++++.+.
T Consensus 3 ~~~~G~i~~~l~y~---------------------------~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~ 55 (142)
T 1rh8_A 3 HPITGEIQLQINYD---------------------------LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVM 55 (142)
T ss_dssp CCCCCEEEEEEEEE---------------------------TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCE
T ss_pred CCcceEEEEEEEEc---------------------------CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCccc
Confidence 45799999999996 46899999999999864 57999999999763
Q ss_pred ---------eEEEeeecCCCCCcccceEEEE-ecCCC-CCCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceec
Q 009539 442 ---------ERKTKHVKKNRDPRWEEEFQFM-LEEPP-TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRIN 510 (532)
Q Consensus 442 ---------~~kT~vv~~t~nP~w~e~f~f~-v~~~~-~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~ 510 (532)
.+||++++++.||+|||.|.|. +.... ....|.|+|||++. ++.+++||++.++|+++.......
T Consensus 56 ~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~~l~i~V~d~d~----~~~~~~lG~~~i~l~~l~~~~~~~ 131 (142)
T 1rh8_A 56 VVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDR----FSSNDFLGEVLIDLSSTSHLDNTP 131 (142)
T ss_dssp ECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECS----SSCEEEEEEEEEETTSCGGGTTCC
T ss_pred ccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCCEEEEEEEECCC----CCCCceEEEEEEeccccccCCCCC
Confidence 3699999999999999999997 53211 24589999999986 678999999999999998776778
Q ss_pred eEEEeCCCC
Q 009539 511 EKYHLIDSK 519 (532)
Q Consensus 511 ~~~~L~~~~ 519 (532)
+||+|....
T Consensus 132 ~W~~L~~~~ 140 (142)
T 1rh8_A 132 RWYPLKEQT 140 (142)
T ss_dssp EEEECBCCC
T ss_pred eEEECCccC
Confidence 999998653
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-17 Score=146.31 Aligned_cols=111 Identities=19% Similarity=0.364 Sum_probs=93.4
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEeeC---CCCCEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRD---PESQAVELA 323 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~---~~~~~L~v~ 323 (532)
+....+.|.|+|++|++|+.++..|.+||||++++.+.. ...++|+++++|.||+|||+|.|.+.. .....|.|+
T Consensus 16 y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~ 95 (141)
T 1v27_A 16 FDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEIT 95 (141)
T ss_dssp EETTTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEE
T ss_pred EeCCCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEE
Confidence 334568999999999999999999999999999995422 345699999999999999999999532 235799999
Q ss_pred EEEccCCCC--CCeeEEEEEeCccCCCCCCeEEEEeccc
Q 009539 324 VYDWEQVGK--HDKMGMNVVPLKELTPEEPSVKTLDLLK 360 (532)
Q Consensus 324 v~d~d~~~~--d~~iG~~~i~l~~l~~~~~~~~~l~l~~ 360 (532)
|||++..++ +++||++.+++.++.... ...|++|..
T Consensus 96 V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~ 133 (141)
T 1v27_A 96 LWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQT 133 (141)
T ss_dssp EEEBCSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBC
T ss_pred EEECCCCcCCCCceEEEEEEEccccCCCC-CCceEECcc
Confidence 999999887 999999999999997654 778988854
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=7.6e-17 Score=140.61 Aligned_cols=121 Identities=21% Similarity=0.340 Sum_probs=99.9
Q ss_pred CCccccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC----CCCCCEEEEEEcC---e
Q 009539 369 NEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK----HHTNPYARILFRG---E 441 (532)
Q Consensus 369 ~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~----~~~dpyv~v~~~~---~ 441 (532)
+....|+|.+++.|.+. .+.|.|+|++|+||+.. +.+||||++++.+ +
T Consensus 4 ~~~~~G~l~~~l~y~~~-------------------------~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~ 58 (138)
T 1ugk_A 4 GSSGLGTLFFSLEYNFE-------------------------RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKH 58 (138)
T ss_dssp CCCCCCEEEEEEEEEGG-------------------------GTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCS
T ss_pred CCCccEEEEEEEEEECC-------------------------CCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCc
Confidence 35678999999999863 78999999999999863 5689999999963 5
Q ss_pred eEEEeeecCCCCCcccceEEEE-ecCCC-CCCeEEEEEEEccccccCCCCCceeEEEEEechhhhccce-eceEEEeCCC
Q 009539 442 ERKTKHVKKNRDPRWEEEFQFM-LEEPP-TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKR-INEKYHLIDS 518 (532)
Q Consensus 442 ~~kT~vv~~t~nP~w~e~f~f~-v~~~~-~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~-~~~~~~L~~~ 518 (532)
.++|++++++.||+|||.|.|. +.... ....|.|+|||++. ++.|++||++.++|+++..... ..-|++|...
T Consensus 59 ~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~d~----~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~ 134 (138)
T 1ugk_A 59 KVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDR----FSRDDIIGEVLIPLSGIELSEGKMLMNREIISG 134 (138)
T ss_dssp EEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECS----SCCCCCCEEEEEECTTCCCTTCCEEEEEECBSS
T ss_pred eEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEECCC----CCCCcEEEEEEEehhHccCCCCcchhhhhhhcC
Confidence 7799999999999999999996 65322 23589999999985 6789999999999999977543 3456788654
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.6e-17 Score=146.21 Aligned_cols=111 Identities=20% Similarity=0.361 Sum_probs=94.1
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCC--cCCceeeEeeCCCCCceeecEEEEEeeCC-CCCEEEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDP-ESQAVELAVY 325 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~-~~~~L~v~v~ 325 (532)
+....|.|.|+|++|++|+..+ .|.+||||++++.+. ....++|+++++|.||+|||+|.|.+... ....|.|+||
T Consensus 22 y~~~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~ 100 (153)
T 3fbk_A 22 IDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVW 100 (153)
T ss_dssp EEESSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEE
T ss_pred EECCCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEE
Confidence 4556789999999999999999 699999999999653 23457999999999999999999998432 1356999999
Q ss_pred EccCCCC-CCeeEEEEEeCccCCC-CCCeEEEEeccc
Q 009539 326 DWEQVGK-HDKMGMNVVPLKELTP-EEPSVKTLDLLK 360 (532)
Q Consensus 326 d~d~~~~-d~~iG~~~i~l~~l~~-~~~~~~~l~l~~ 360 (532)
|++..++ |++||++.+++.++.. +.....|++|..
T Consensus 101 d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~ 137 (153)
T 3fbk_A 101 NRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLG 137 (153)
T ss_dssp ECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBC
T ss_pred eCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCC
Confidence 9998876 9999999999999985 677888998855
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-17 Score=150.62 Aligned_cols=108 Identities=25% Similarity=0.422 Sum_probs=94.2
Q ss_pred CeEEEEEEEEEcCCCCcCCC-CCCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEE-Ec
Q 009539 252 PVGILHVKVVKAMNLKKKDL-LGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVY-DW 327 (532)
Q Consensus 252 ~~g~L~V~v~~A~~L~~~d~-~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~-d~ 327 (532)
..|.|.|+|++|++|+.+|. .|.+||||++++.+.. ...++|+++++|.||+|||+|.|.+.. ....|.|+|| |+
T Consensus 28 ~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~-~~~~L~~~V~~d~ 106 (171)
T 2q3x_A 28 KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESP-QGKVLQVIVWGDY 106 (171)
T ss_dssp ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCC-TTEEEEEEEEEEC
T ss_pred CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecC-CCCEEEEEEEEcC
Confidence 46899999999999999985 6999999999998643 135699999999999999999999854 4689999999 99
Q ss_pred cCCCCCCeeEEEEEeCccCCCCCCeEEEEeccc
Q 009539 328 EQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLK 360 (532)
Q Consensus 328 d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~ 360 (532)
|..++|++||++.++|.++..+.....|++|..
T Consensus 107 d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~ 139 (171)
T 2q3x_A 107 GRMDHKCFMGVAQILLEELDLSSMVIGWYKLFP 139 (171)
T ss_dssp STTCSSEEEEEEEECGGGSCTTSCEEEEEECBC
T ss_pred CCCCCCCEEEEEEEEHHHcccCCCcceeEECCC
Confidence 999999999999999999998888889999854
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=5.1e-18 Score=148.85 Aligned_cols=108 Identities=25% Similarity=0.447 Sum_probs=93.2
Q ss_pred eEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcC-----------CceeeEeeCCCCCceeecEEEEE-eeC--CCCC
Q 009539 253 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKL-----------PSKKTTVKHKNLNPEWNEEYNFT-VRD--PESQ 318 (532)
Q Consensus 253 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~-----------~~~~T~v~~~t~nP~Wne~f~f~-v~~--~~~~ 318 (532)
.|.|.|+|++|++|+.+|..|.+||||++++.+... ..++|+++++|.||+|||+|.|. +.. ....
T Consensus 17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~ 96 (142)
T 1rh8_A 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK 96 (142)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCC
Confidence 478999999999999999999999999999987532 23689999999999999999997 532 2367
Q ss_pred EEEEEEEEccCCCCCCeeEEEEEeCccCCCCCCeEEEEeccc
Q 009539 319 AVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLK 360 (532)
Q Consensus 319 ~L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~ 360 (532)
.|.|+|||+|..++|++||++.+++.++..+.....|++|..
T Consensus 97 ~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~ 138 (142)
T 1rh8_A 97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKE 138 (142)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBC
T ss_pred EEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCc
Confidence 999999999999999999999999999987767778888743
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-17 Score=146.46 Aligned_cols=121 Identities=23% Similarity=0.360 Sum_probs=100.6
Q ss_pred CCccccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEcC-----
Q 009539 369 NEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG----- 440 (532)
Q Consensus 369 ~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~----- 440 (532)
+....|+|++++.|.+. .+.|.|+|++|+||+.. + +||||++++..
T Consensus 6 ~~~~~G~l~~~l~y~~~-------------------------~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~ 59 (142)
T 2dmg_A 6 SGSPLGQIQLTIRHSSQ-------------------------RNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRS 59 (142)
T ss_dssp CSCSSCEEEEEEEEETT-------------------------TTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSS
T ss_pred CCCCcceEEEEEEEeCC-------------------------CCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCC
Confidence 45678999999999853 68999999999999863 5 99999999943
Q ss_pred eeEEEeeecCCCCCcccceEEEEecCCC-CCCeEEEEEEEccccccCCC--CCceeEEEEEechhhhccceeceEEEeCC
Q 009539 441 EERKTKHVKKNRDPRWEEEFQFMLEEPP-TNDRLHVEVCSVSSRIGLLH--PKETLGYIDINLSDVVSNKRINEKYHLID 517 (532)
Q Consensus 441 ~~~kT~vv~~t~nP~w~e~f~f~v~~~~-~~~~l~v~V~d~~~~~~~~~--~d~~lG~~~i~L~~l~~~~~~~~~~~L~~ 517 (532)
.+++|++++++.||+|||+|.|.+.... ....|.|+|||++. ++ .|++||++.++|+++.......+||+|..
T Consensus 60 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~----~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~ 135 (142)
T 2dmg_A 60 GRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGG----FLSKDKGLLGKVLVALASEELAKGWTQWYDLTE 135 (142)
T ss_dssp SCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECCC----SSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBC
T ss_pred CcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEECCC----ccccCCcEEEEEEEecccccccccccceeeccC
Confidence 5679999999999999999999985321 12489999999985 33 35799999999999887767789999986
Q ss_pred CC
Q 009539 518 SK 519 (532)
Q Consensus 518 ~~ 519 (532)
.+
T Consensus 136 ~~ 137 (142)
T 2dmg_A 136 DS 137 (142)
T ss_dssp SC
T ss_pred CC
Confidence 53
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-17 Score=149.93 Aligned_cols=106 Identities=19% Similarity=0.383 Sum_probs=91.2
Q ss_pred CCccccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEcC-----
Q 009539 369 NEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG----- 440 (532)
Q Consensus 369 ~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~----- 440 (532)
.....|+|.+++.|.+. .+.|.|+|++|+||+.. +.+||||++++.+
T Consensus 19 ~~~~~G~l~~~l~y~~~-------------------------~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~ 73 (166)
T 2cm5_A 19 DIEERGKILVSLMYSTQ-------------------------QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKK 73 (166)
T ss_dssp -CCCCCEEEEEEEEETT-------------------------TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---C
T ss_pred CcCccceEEEEEEEECC-------------------------CCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCcc
Confidence 35678999999999863 78999999999999863 5799999999976
Q ss_pred eeEEEeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEccccccCCCCCceeEEEEEechhh
Q 009539 441 EERKTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDV 503 (532)
Q Consensus 441 ~~~kT~vv~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l 503 (532)
..++|++++++.||+|||.|.|.+..... ...|.|+|||++. ++.+++||++.++|+++
T Consensus 74 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~----~~~~~~iG~~~i~l~~~ 133 (166)
T 2cm5_A 74 AKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDI----GKSNDYIGGCQLGISAK 133 (166)
T ss_dssp CEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCS----SSCCEEEEEEEEETTCC
T ss_pred ceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEECCC----CCCCcEEEeEEEecccC
Confidence 56799999999999999999999965321 3589999999985 67899999999999875
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-16 Score=138.09 Aligned_cols=114 Identities=21% Similarity=0.383 Sum_probs=95.4
Q ss_pred CceEEEEEEeeeecCCCC---CCCCCEEEEEEcC--eeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccc
Q 009539 410 GGGLLVVIVHEAQDVEGK---HHTNPYARILFRG--EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRI 484 (532)
Q Consensus 410 ~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~--~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~ 484 (532)
....|+|+|++|++|+.. +.+||||++++++ +.++|++++++.||+|||.|.|.+... +.|.++|||++.
T Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~---~~l~~~v~d~d~-- 77 (132)
T 3pyc_A 3 EFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKT---DSITISVWNHKK-- 77 (132)
T ss_dssp SEEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETT---CCEEEEEEEGGG--
T ss_pred CeEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCC---CEEEEEEEECCC--
Confidence 356899999999999763 5799999999975 678999999999999999999999764 459999999985
Q ss_pred cCCCC---CceeEEEEEechhhhc-cceeceEEEeCCC-------CCeEEEEEEEEE
Q 009539 485 GLLHP---KETLGYIDINLSDVVS-NKRINEKYHLIDS-------KNGRIQIELQWR 530 (532)
Q Consensus 485 ~~~~~---d~~lG~~~i~L~~l~~-~~~~~~~~~L~~~-------~~G~i~l~~~w~ 530 (532)
++. |++||++.++++++.. .....+|++|... ..|+|.+++.++
T Consensus 78 --~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~r 132 (132)
T 3pyc_A 78 --IHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQTR 132 (132)
T ss_dssp --TTSSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEEC
T ss_pred --CCCCCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEcC
Confidence 444 7999999999999844 3445688999654 269999999875
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=7.5e-17 Score=144.26 Aligned_cols=121 Identities=19% Similarity=0.337 Sum_probs=100.0
Q ss_pred CCccccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEcC-----
Q 009539 369 NEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG----- 440 (532)
Q Consensus 369 ~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~----- 440 (532)
.....|+|++++.|.|. .+.|.|+|++|+||+.. +.+||||++++.+
T Consensus 7 ~~~~~G~l~~~l~y~~~-------------------------~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~ 61 (159)
T 1tjx_A 7 ILEKLGDICFSLRYVPT-------------------------AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRL 61 (159)
T ss_dssp GGGCCCEEEEEEEEETT-------------------------TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEE
T ss_pred CcCcCCeEEEEEEEcCC-------------------------CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCcee
Confidence 35678999999999863 78999999999999864 5799999999963
Q ss_pred eeEEEeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEccccccCCCCCceeEEEEEechh----------hhc--cc
Q 009539 441 EERKTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSD----------VVS--NK 507 (532)
Q Consensus 441 ~~~kT~vv~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~----------l~~--~~ 507 (532)
..++|++++++.||+|||+|.|.+..... ...|.|+|||++. ++.|++||++.+++.. ++. +.
T Consensus 62 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~----~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~ 137 (159)
T 1tjx_A 62 KKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDK----IGKNDAIGKVFVGYNSTGAELRHWSDMLANPRR 137 (159)
T ss_dssp EEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCS----SSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTC
T ss_pred ceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEECCC----CCCCceEEEEEECCCCCCcHHHHHHHHHHCCCC
Confidence 35699999999999999999999864322 3479999999985 6789999999999984 443 34
Q ss_pred eeceEEEeCCC
Q 009539 508 RINEKYHLIDS 518 (532)
Q Consensus 508 ~~~~~~~L~~~ 518 (532)
...+||+|...
T Consensus 138 ~~~~W~~L~~~ 148 (159)
T 1tjx_A 138 PIAQWHTLQVE 148 (159)
T ss_dssp CEEEEEECBCH
T ss_pred eeeeEEECcCc
Confidence 67899999754
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-17 Score=147.12 Aligned_cols=118 Identities=18% Similarity=0.248 Sum_probs=92.2
Q ss_pred CccccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEc--Ce---
Q 009539 370 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR--GE--- 441 (532)
Q Consensus 370 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~--~~--- 441 (532)
....|+|.+++.|.|. .+.|.|+|++|+||+.. +.+||||++++. ++
T Consensus 13 ~~~~G~l~~~l~y~~~-------------------------~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~ 67 (153)
T 1w15_A 13 PSGRGELLVSLCYQST-------------------------TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRIS 67 (153)
T ss_dssp ---CCEEEEEEEEETT-------------------------TTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEE
T ss_pred CccccEEEEEEEEcCC-------------------------CCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEec
Confidence 5578999999999863 68999999999999863 578999999993 33
Q ss_pred eEEEeeecCCCCCcccceEEEEecCCCCC-CeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCC
Q 009539 442 ERKTKHVKKNRDPRWEEEFQFMLEEPPTN-DRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS 518 (532)
Q Consensus 442 ~~kT~vv~~t~nP~w~e~f~f~v~~~~~~-~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 518 (532)
++||++++++.||+|||+|.|.+...... ..|.|+|||++. ++.+++||++.++|++ ......+||+|...
T Consensus 68 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~d~----~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~ 139 (153)
T 1w15_A 68 KKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSER----GSRNEVIGRLVLGATA--EGSGGGHWKEICDF 139 (153)
T ss_dssp EEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCT----TSCCEEEEEEEESTTC--CSHHHHHHHHHHHS
T ss_pred eEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeCCC----CCCCcEEEEEEECCCC--CchHHHHHHHHHhC
Confidence 56999999999999999999999764332 479999999985 6789999999999988 22233455555443
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=99.71 E-value=3.8e-17 Score=143.27 Aligned_cols=120 Identities=21% Similarity=0.397 Sum_probs=98.7
Q ss_pred CCccccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEcC-----
Q 009539 369 NEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG----- 440 (532)
Q Consensus 369 ~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~----- 440 (532)
.....|+|.+++.|.+. .+.|.|+|++|++|+.. +.+||||++++.+
T Consensus 11 ~~~~~G~l~~~l~y~~~-------------------------~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~ 65 (142)
T 2chd_A 11 QATTLGALEFSLLYDQD-------------------------NSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKS 65 (142)
T ss_dssp ---CCCEEEEEEEEEGG-------------------------GTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGG
T ss_pred CCCccceEEEEEEEeCC-------------------------CCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCc
Confidence 35678999999999863 78999999999999874 5789999999975
Q ss_pred eeEEEeeecCCCCCcccceEEEE-ecCCCC-CCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCC
Q 009539 441 EERKTKHVKKNRDPRWEEEFQFM-LEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLID 517 (532)
Q Consensus 441 ~~~kT~vv~~t~nP~w~e~f~f~-v~~~~~-~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~ 517 (532)
..+||++++++.||+|||.|.|. +..... ...|.|+|||++. ++.|++||++.++|+++..++...-|++|..
T Consensus 66 ~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~----~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 140 (142)
T 2chd_A 66 NKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDK----FGHNEFIGETRFSLKKLKANQRKNFNICLER 140 (142)
T ss_dssp GEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEEECT----TSCEEEEEEEEEEGGGCCTTCCEEEEEECBC
T ss_pred ceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEECCC----CCCCcEEEEEEEEHHHcCCCCccEEEEeccc
Confidence 57799999999999999999998 542111 2589999999985 5778999999999999987776666777754
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-16 Score=156.24 Aligned_cols=132 Identities=19% Similarity=0.309 Sum_probs=113.6
Q ss_pred ccccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEcC---eeEE
Q 009539 371 KSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG---EERK 444 (532)
Q Consensus 371 ~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~---~~~k 444 (532)
...|+|++++.|.+. .+.|.|+|++|+||+.. +.+||||++++++ +.++
T Consensus 3 ~~~G~l~~~l~y~~~-------------------------~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~ 57 (284)
T 2r83_A 3 EKLGKLQYSLDYDFQ-------------------------NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFE 57 (284)
T ss_dssp CCCCEEEEEEEEETT-------------------------TTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEE
T ss_pred cceeEEEEEEEEECC-------------------------CCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEe
Confidence 468999999999863 78999999999999863 6899999999964 4679
Q ss_pred EeeecCCCCCcccceEEEEecCCC-CCCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCC-----
Q 009539 445 TKHVKKNRDPRWEEEFQFMLEEPP-TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS----- 518 (532)
Q Consensus 445 T~vv~~t~nP~w~e~f~f~v~~~~-~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~----- 518 (532)
|++++++.||+|||+|.|.+.... ....|.++|||++. ++.|++||++.++|.++..+....+||+|...
T Consensus 58 T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~----~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~ 133 (284)
T 2r83_A 58 TKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDR----FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQ 133 (284)
T ss_dssp CCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECCS----SSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCCC
T ss_pred CCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECCC----CCCCceeEEEEEcchhcccCCcceeEEEeeccccccc
Confidence 999999999999999999986532 23589999999985 67899999999999999887788899999653
Q ss_pred -CCeEEEEEEEEEe
Q 009539 519 -KNGRIQIELQWRT 531 (532)
Q Consensus 519 -~~G~i~l~~~w~p 531 (532)
..|+|.++++|.|
T Consensus 134 ~~~G~i~l~l~~~p 147 (284)
T 2r83_A 134 EKLGDICFSLRYVP 147 (284)
T ss_dssp CCCCEEEEEEEEET
T ss_pred cccccEEEEEEecC
Confidence 3599999999876
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=7.6e-17 Score=138.99 Aligned_cols=89 Identities=20% Similarity=0.328 Sum_probs=74.8
Q ss_pred CCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeC-CCCCceeecEEEEEeeCCCCCEEEEEEEEccC
Q 009539 251 RPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKH-KNLNPEWNEEYNFTVRDPESQAVELAVYDWEQ 329 (532)
Q Consensus 251 ~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~ 329 (532)
.+.+.|.|+|++|++++. .|.+||||+++ . +. .+|+++. ++.||+|||+|.|.+.+. ...|.|+|||+|
T Consensus 2 ~~~~~L~V~V~~A~~l~~---~g~~DPYv~v~-~-~~---~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d- 71 (131)
T 2cjt_A 2 GVMSLLCVGVKKAKFDGA---QEKFNTYVTLK-V-QN---VKSTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKG- 71 (131)
T ss_dssp CCCEEEEEEEEEEECSSC---GGGCEEEEEEE-E-TT---EEEECCCEESSSCEEEEEEEEEECCC-SSEEEEEEEECC-
T ss_pred CcceEEEEEEEEeECCCC---CCCcCeEEEEE-e-cC---EEEeEecCCCCCceECCEEEEEEeCC-CCeEEEEEEECC-
Confidence 356899999999998853 57899999999 2 22 3555554 799999999999999864 568999999999
Q ss_pred CCCCCeeEEEEEeCccCCCC
Q 009539 330 VGKHDKMGMNVVPLKELTPE 349 (532)
Q Consensus 330 ~~~d~~iG~~~i~l~~l~~~ 349 (532)
.++|++||++.++|+++...
T Consensus 72 ~~~dd~iG~~~i~l~~l~~~ 91 (131)
T 2cjt_A 72 LIWDTMVGTVWIPLRTIRQS 91 (131)
T ss_dssp SSCEEEEEEEEEEGGGSCBC
T ss_pred CCCCCeEEEEEEEHHHhhhc
Confidence 88999999999999998754
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=7.3e-17 Score=144.31 Aligned_cols=111 Identities=37% Similarity=0.591 Sum_probs=92.0
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEeeCCC--CCEEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPE--SQAVELAV 324 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~v 324 (532)
+....|.|.|+|++|+||+..|..|.+||||++++.+.. ...++|++++++.||+|||+|.|.+.... ...|.|+|
T Consensus 20 y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V 99 (159)
T 1tjx_A 20 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTV 99 (159)
T ss_dssp EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEE
T ss_pred EcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEE
Confidence 444678999999999999999998999999999997532 23569999999999999999999986432 46899999
Q ss_pred EEccCCCCCCeeEEEEEeCccC------------CCCCCeEEEEecc
Q 009539 325 YDWEQVGKHDKMGMNVVPLKEL------------TPEEPSVKTLDLL 359 (532)
Q Consensus 325 ~d~d~~~~d~~iG~~~i~l~~l------------~~~~~~~~~l~l~ 359 (532)
||+|..++|++||++.+++..+ ..+.....|+.|.
T Consensus 100 ~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~ 146 (159)
T 1tjx_A 100 LDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQ 146 (159)
T ss_dssp EECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECB
T ss_pred EECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECc
Confidence 9999999999999999999864 2334556677664
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.3e-17 Score=141.52 Aligned_cols=99 Identities=31% Similarity=0.520 Sum_probs=85.7
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEeeCCC--CCEEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPE--SQAVELAV 324 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~v 324 (532)
+....|.|.|+|++|++|+..+..|.+||||++++.+.. ...++|++++++.||+|||+|.|.+.... ...|.|+|
T Consensus 11 y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V 90 (138)
T 3n5a_A 11 YNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITV 90 (138)
T ss_dssp EETTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEE
T ss_pred EcCCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEE
Confidence 344568999999999999999998999999999997542 23468999999999999999999986542 36899999
Q ss_pred EEccCCCCCCeeEEEEEeCccCC
Q 009539 325 YDWEQVGKHDKMGMNVVPLKELT 347 (532)
Q Consensus 325 ~d~d~~~~d~~iG~~~i~l~~l~ 347 (532)
||+|..++|++||++.+++.++.
T Consensus 91 ~d~~~~~~~~~lG~~~i~l~~~~ 113 (138)
T 3n5a_A 91 MDKDKLSRNDVIGKIYLSWKSGP 113 (138)
T ss_dssp EECCSSSCCEEEEEEEESSSSCH
T ss_pred EECCCCCCCcEEEEEEEccccCC
Confidence 99999999999999999999753
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-16 Score=145.11 Aligned_cols=116 Identities=22% Similarity=0.312 Sum_probs=98.8
Q ss_pred CccccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCC----CCCCCCEEEEEEcCe----
Q 009539 370 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEG----KHHTNPYARILFRGE---- 441 (532)
Q Consensus 370 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~----~~~~dpyv~v~~~~~---- 441 (532)
....|+|++++.|. .+.|.|+|++|+||+. .+.+||||++++.+.
T Consensus 15 ~~~~G~l~~~l~y~---------------------------~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~ 67 (171)
T 2q3x_A 15 TPAMGDIQIGMEDK---------------------------KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACI 67 (171)
T ss_dssp --CCCEEEEEEEEE---------------------------TTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEE
T ss_pred CCCccEEEEEEEEC---------------------------CCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccc
Confidence 45689999999992 5799999999999985 367999999998642
Q ss_pred -eEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEE-EccccccCCCCCceeEEEEEechhhhccceeceEEEeCCC
Q 009539 442 -ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVC-SVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS 518 (532)
Q Consensus 442 -~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~-d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 518 (532)
.+||++++++.||+|||+|+|.+.. ....|.|+|| |++. ++.|++||++.++|+++..++...+||+|...
T Consensus 68 ~~~kT~v~~~t~nP~wne~f~f~v~~--~~~~L~~~V~~d~d~----~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 140 (171)
T 2q3x_A 68 AKKKTRIARKTLDPLYQQSLVFDESP--QGKVLQVIVWGDYGR----MDHKCFMGVAQILLEELDLSSMVIGWYKLFPP 140 (171)
T ss_dssp EEEECCCCCSCSSCEEEEEEECSSCC--TTEEEEEEEEEECST----TCSSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred cceeCccCCCCCCCCCCcEEEEEecC--CCCEEEEEEEEcCCC----CCCCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence 6699999999999999999999864 3468999999 8875 67899999999999999877778899999764
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-16 Score=143.76 Aligned_cols=115 Identities=20% Similarity=0.351 Sum_probs=98.1
Q ss_pred CceEEEEEEeeeecCC-CC--CCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccC
Q 009539 410 GGGLLVVIVHEAQDVE-GK--HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGL 486 (532)
Q Consensus 410 ~~g~L~v~i~~a~~L~-~~--~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~ 486 (532)
..+.|.|+|++|++|+ .. +.+||||+++++++.+||++++++.||+|||.|.|.+.. .+.|.|+|||++.
T Consensus 34 ~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~~---~~~L~~~V~D~d~---- 106 (173)
T 2nq3_A 34 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP---VSKLHFRVWSHQT---- 106 (173)
T ss_dssp CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT---TCEEEEEEEECCS----
T ss_pred CceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeCC---CCEEEEEEEECCC----
Confidence 5789999999999998 32 459999999999988999999999999999999999853 5689999999986
Q ss_pred CCCCceeEEEEEechhhhccc-----eeceEEEeCCC-----CCeEEEEEEEEEe
Q 009539 487 LHPKETLGYIDINLSDVVSNK-----RINEKYHLIDS-----KNGRIQIELQWRT 531 (532)
Q Consensus 487 ~~~d~~lG~~~i~L~~l~~~~-----~~~~~~~L~~~-----~~G~i~l~~~w~p 531 (532)
++.|++||++.++|.++.... ....|++|... ..|+|.+.+.+.|
T Consensus 107 ~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~ 161 (173)
T 2nq3_A 107 LKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQ 161 (173)
T ss_dssp SSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEE
T ss_pred CCCCceEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeeee
Confidence 678999999999999998632 23579999753 2699999998765
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-16 Score=138.71 Aligned_cols=115 Identities=20% Similarity=0.403 Sum_probs=93.2
Q ss_pred ccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEcC-----eeEE
Q 009539 373 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----EERK 444 (532)
Q Consensus 373 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~-----~~~k 444 (532)
+|+|.+++.|.+. .+.|.|+|++|+||+.. +.+||||++++.+ .+++
T Consensus 2 ~G~l~~sl~y~~~-------------------------~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~k 56 (138)
T 3n5a_A 2 RGELLLSLCYNPS-------------------------ANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKK 56 (138)
T ss_dssp CCEEEEEEEEETT-------------------------TTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEE
T ss_pred CcEEEEEEEEcCC-------------------------CCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEe
Confidence 6999999999863 78999999999999873 5799999999964 3569
Q ss_pred EeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCC
Q 009539 445 TKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS 518 (532)
Q Consensus 445 T~vv~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 518 (532)
|++++++.||+|||.|.|.+..... ...|.++|||++. ++.|++||++.++|+++.. ...+|++|...
T Consensus 57 T~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d~~~----~~~~~~lG~~~i~l~~~~~--~~~~W~~l~~~ 125 (138)
T 3n5a_A 57 TVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDK----LSRNDVIGKIYLSWKSGPG--EVKHWKDMIAR 125 (138)
T ss_dssp CCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEECCS----SSCCEEEEEEEESSSSCHH--HHHHHHHHHHS
T ss_pred CccccCCCCCcCcceEEEECChhhcCceEEEEEEEECCC----CCCCcEEEEEEEccccCCh--HHHHHHHHHhC
Confidence 9999999999999999999875421 2479999999986 6789999999999996432 23445555443
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.7e-16 Score=143.02 Aligned_cols=99 Identities=29% Similarity=0.525 Sum_probs=86.6
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAV 324 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v 324 (532)
+....+.|.|+|++|++|+..+..|.+||||++++.+.. ...++|+++++|.||+|||+|.|.+... ....|.|+|
T Consensus 32 y~~~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V 111 (166)
T 2cm5_A 32 YSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISV 111 (166)
T ss_dssp EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEE
T ss_pred EECCCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEE
Confidence 445678999999999999999999999999999998632 3457999999999999999999998643 256999999
Q ss_pred EEccCCCCCCeeEEEEEeCccCC
Q 009539 325 YDWEQVGKHDKMGMNVVPLKELT 347 (532)
Q Consensus 325 ~d~d~~~~d~~iG~~~i~l~~l~ 347 (532)
||++..++|++||++.+++.++.
T Consensus 112 ~d~d~~~~~~~iG~~~i~l~~~~ 134 (166)
T 2cm5_A 112 WDYDIGKSNDYIGGCQLGISAKG 134 (166)
T ss_dssp EECCSSSCCEEEEEEEEETTCCH
T ss_pred EECCCCCCCcEEEeEEEecccCC
Confidence 99999999999999999999863
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=99.67 E-value=8.4e-17 Score=142.97 Aligned_cols=97 Identities=34% Similarity=0.470 Sum_probs=79.1
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEeeCCC--CCEEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPE--SQAVELAV 324 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~v 324 (532)
+....+.|.|+|++|++|+..+..|.+||||++++.+.. ...++|++++++.||+|||+|.|.+.... ...|.|+|
T Consensus 25 y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V 104 (153)
T 1w15_A 25 YQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLV 104 (153)
T ss_dssp EETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEE
T ss_pred EcCCCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEE
Confidence 344568999999999999999988999999999996432 22469999999999999999999987543 36899999
Q ss_pred EEccCCCCCCeeEEEEEeCcc
Q 009539 325 YDWEQVGKHDKMGMNVVPLKE 345 (532)
Q Consensus 325 ~d~d~~~~d~~iG~~~i~l~~ 345 (532)
||+|..++|++||++.+++.+
T Consensus 105 ~d~d~~~~~~~lG~~~i~l~~ 125 (153)
T 1w15_A 105 LDSERGSRNEVIGRLVLGATA 125 (153)
T ss_dssp EECCTTSCCEEEEEEEESTTC
T ss_pred EeCCCCCCCcEEEEEEECCCC
Confidence 999999999999999999988
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.7e-16 Score=132.66 Aligned_cols=119 Identities=16% Similarity=0.253 Sum_probs=100.3
Q ss_pred eEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeC-CCCCceeecEEEEEeeCCC--CCEEEEEEEEccC
Q 009539 253 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKH-KNLNPEWNEEYNFTVRDPE--SQAVELAVYDWEQ 329 (532)
Q Consensus 253 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~~--~~~L~v~v~d~d~ 329 (532)
.-.|+|+|.+|.+|+ |++|||+++.+.+.+ ++|++++ ++.||+|||.|.|++..+. ...|.+.|||+++
T Consensus 20 ~msL~V~l~~a~~Lp-----g~~Dp~akv~FRg~k---~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~ 91 (144)
T 3l9b_A 20 HMALIVHLKTVSELR-----GRADRIAKVTFRGQS---FYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSK 91 (144)
T ss_dssp CEEEEEEEEEEESCC-----SCEEEEEEEEETTEE---EECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECT
T ss_pred cEEEEEEEEEecCCC-----CCCCCeEEEEEeccc---eeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECcc
Confidence 347999999999998 578999999997544 5999998 7999999999999998643 6799999999999
Q ss_pred CCCCCeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEEc
Q 009539 330 VGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF 385 (532)
Q Consensus 330 ~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 385 (532)
++++++||++.++|+++..+.....+..|.. .++....++|.++++|.|.
T Consensus 92 v~~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD------~n~~~~~a~I~l~l~Y~pp 141 (144)
T 3l9b_A 92 VFSNKLIGTFRMVLQKVVEENRVEVSDTLID------DNNAIIKTSLSMEVRYQAA 141 (144)
T ss_dssp TSCCEEEEEEEEESHHHHHHSEEEEEEEEEC------TTSCEEEEEEEEEEEEEET
T ss_pred ccCCCEEEEEEEEhHHhccCCeEEEeecccC------CCCCccccEEEEEEEecCC
Confidence 9999999999999999998766666655533 1234456899999999985
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=99.63 E-value=5.2e-16 Score=165.35 Aligned_cols=121 Identities=26% Similarity=0.464 Sum_probs=103.5
Q ss_pred CCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCC
Q 009539 251 RPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQV 330 (532)
Q Consensus 251 ~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~ 330 (532)
...|.|.|+|++|++|+.+|..|.+||||++++++.. ++|+++++|.||+|||+|.|.+..+....|+|+|||+|..
T Consensus 384 ~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~---~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~ 460 (510)
T 3jzy_A 384 SGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQS---YTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQF 460 (510)
T ss_dssp --CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEE---EECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSS
T ss_pred CCCceEEEEeceeecCCCCCCCCCCCeEEEEEECCee---ccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC
Confidence 4578999999999999999999999999999997543 5999999999999999999999877778899999999999
Q ss_pred CCCCeeEEEEEeCccCCCCCC----eEEEEecccccccCCCCCCccccEEEEEEEEEE
Q 009539 331 GKHDKMGMNVVPLKELTPEEP----SVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 384 (532)
Q Consensus 331 ~~d~~iG~~~i~l~~l~~~~~----~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p 384 (532)
++|++||++.+++.++..+.. ...|+.+ .+...|+|++++.+.-
T Consensus 461 ~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l----------~~~~~G~i~l~~~l~l 508 (510)
T 3jzy_A 461 SPDDFLGRTEIPVAKIRTEQESKGPMTRRLLL----------HEVPTGEVWVRFDLQL 508 (510)
T ss_dssp SSCCEEEEEEEEHHHHHHHHHHHCSCCEEEEC----------BSSSSCEEEEEEEEEE
T ss_pred CCCCceEEEEEEHHHhccccCCCCceeeeecC----------CCCCCceEEEEEEEEE
Confidence 999999999999999876432 4566665 2457899999887653
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-15 Score=149.88 Aligned_cols=133 Identities=21% Similarity=0.375 Sum_probs=109.2
Q ss_pred CccccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEE---cCeeE
Q 009539 370 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILF---RGEER 443 (532)
Q Consensus 370 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~---~~~~~ 443 (532)
.+..|+|++++.|.+ ..+.|.|+|++|++|+.. +.+||||++++ +.+.+
T Consensus 3 ~~~~G~l~~~l~y~~-------------------------~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~ 57 (296)
T 1dqv_A 3 GAPCGRISFALRYLY-------------------------GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKF 57 (296)
T ss_dssp CCSSCEEEEEEECCS-------------------------SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCE
T ss_pred CCeeeEEEEEEEEeC-------------------------CCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeE
Confidence 567999999999975 378999999999999864 57999999999 45678
Q ss_pred EEeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEccccccCCCCCceeEEEEEe-chhhhc-cceeceEEEeCCC--
Q 009539 444 KTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDIN-LSDVVS-NKRINEKYHLIDS-- 518 (532)
Q Consensus 444 kT~vv~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~-L~~l~~-~~~~~~~~~L~~~-- 518 (532)
+|++++++.||+|||+|.|.+..... ...|.|+|||++. +++|++||++.++ +.++.. ......|++|...
T Consensus 58 kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~----~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~ 133 (296)
T 1dqv_A 58 QTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDR----FSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGS 133 (296)
T ss_dssp ECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCS----SSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSS
T ss_pred eCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcCC----CCCCceEEEEEeccccccccCCccceeeeccccccc
Confidence 99999999999999999999864321 3489999999986 6789999999996 555554 3345689999643
Q ss_pred ---CCeEEEEEEEEEe
Q 009539 519 ---KNGRIQIELQWRT 531 (532)
Q Consensus 519 ---~~G~i~l~~~w~p 531 (532)
..|+|.+.+.+.|
T Consensus 134 ~~~~~G~i~vsl~y~~ 149 (296)
T 1dqv_A 134 EKADLGELNFSLCYLP 149 (296)
T ss_dssp CCSCCCEEEEEEEEET
T ss_pred cccccceEEEEEEecc
Confidence 2599999999876
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.5e-15 Score=126.02 Aligned_cols=116 Identities=19% Similarity=0.405 Sum_probs=101.7
Q ss_pred ceEEEEEEeeeecCCCCCCCCCEEEEEEcCeeEEEeeec-CCCCCcccceEEEEecCCCC-CCeEEEEEEEccccccCCC
Q 009539 411 GGLLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVK-KNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLH 488 (532)
Q Consensus 411 ~g~L~v~i~~a~~L~~~~~~dpyv~v~~~~~~~kT~vv~-~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~ 488 (532)
--.|+|.|.+|.+|++ .+|||+++.+.+.++||++++ .+.||+|||.|+|++..+.. .+.|.|.|+|+++ +.
T Consensus 20 ~msL~V~l~~a~~Lpg--~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~----v~ 93 (144)
T 3l9b_A 20 HMALIVHLKTVSELRG--RADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSK----VF 93 (144)
T ss_dssp CEEEEEEEEEEESCCS--CEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECT----TS
T ss_pred cEEEEEEEEEecCCCC--CCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECcc----cc
Confidence 4578999999999995 699999999999999999998 69999999999999987533 3589999999987 67
Q ss_pred CCceeEEEEEechhhhccceeceEEEeCCCC----CeEEEEEEEEEeC
Q 009539 489 PKETLGYIDINLSDVVSNKRINEKYHLIDSK----NGRIQIELQWRTA 532 (532)
Q Consensus 489 ~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~----~G~i~l~~~w~p~ 532 (532)
++++||++.++|.++...+...-+-.|.+.+ .+.|.+++.|.|+
T Consensus 94 ~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~n~~~~~a~I~l~l~Y~pp 141 (144)
T 3l9b_A 94 SNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLSMEVRYQAA 141 (144)
T ss_dssp CCEEEEEEEEESHHHHHHSEEEEEEEEECTTSCEEEEEEEEEEEEEET
T ss_pred CCCEEEEEEEEhHHhccCCeEEEeecccCCCCCccccEEEEEEEecCC
Confidence 8999999999999999988777777787654 4899999999985
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.5e-15 Score=134.79 Aligned_cols=89 Identities=19% Similarity=0.315 Sum_probs=75.3
Q ss_pred CCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeC-CCCCceeecEEEEEeeCCCCCEEEEEEEEccC
Q 009539 251 RPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKH-KNLNPEWNEEYNFTVRDPESQAVELAVYDWEQ 329 (532)
Q Consensus 251 ~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~ 329 (532)
.+.+.|+|+|++|++++ ..|.+||||+++ . +. .+|++++ ++.||+|||+|.|.+.+. ...|.|+|||+|
T Consensus 11 g~~~~L~V~V~~A~~l~---~~g~~DPYV~v~-~-~~---~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d- 80 (167)
T 2cjs_A 11 GILSLLCVGVKKAKFDG---AQEKFNTYVTLK-V-QN---VESTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKG- 80 (167)
T ss_dssp SCCCEEEEEEEEEECSS---CGGGCEEEEEEE-E-TT---EEEECCCEESSSCEEEEEEEEECCCT-TSEEEEEEEECC-
T ss_pred CceEEEEEEEEEEECCC---CCCCCCeEEEEE-e-cc---eEEEEecCCCCCCCCCCEEEEEeeCC-CCEEEEEEEECC-
Confidence 35789999999999884 258899999999 2 22 3666665 699999999999999864 568999999999
Q ss_pred CCCCCeeEEEEEeCccCCCC
Q 009539 330 VGKHDKMGMNVVPLKELTPE 349 (532)
Q Consensus 330 ~~~d~~iG~~~i~l~~l~~~ 349 (532)
.++|++||++.++|+++...
T Consensus 81 ~~~dd~iG~~~i~L~~l~~~ 100 (167)
T 2cjs_A 81 LIWDTMVGTVWIPLRTIRQS 100 (167)
T ss_dssp SSCCEEEEEEEEEGGGSCBC
T ss_pred CCCCceEEEEEEEHHHhccc
Confidence 88999999999999998654
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.4e-15 Score=157.43 Aligned_cols=114 Identities=22% Similarity=0.268 Sum_probs=96.0
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeC-CCCCEEEEEEEEc
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRD-PESQAVELAVYDW 327 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~-~~~~~L~v~v~d~ 327 (532)
.....|.|+|+|++|++|+. |..|++||||+++++++. .+|+++++++||+|||+|.|.+.. ...+.|+|+|||+
T Consensus 389 ~~~~~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~---~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~ 464 (540)
T 3nsj_A 389 RQRGLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQE---FRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDA 464 (540)
T ss_dssp SSTTEEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEE---EECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEEC
T ss_pred ccCcccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEe---eeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEEC
Confidence 44568999999999999998 989999999999998653 699999999999999999998653 3578899999999
Q ss_pred cCCCCCCeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEE
Q 009539 328 EQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 383 (532)
Q Consensus 328 d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~ 383 (532)
|..++||+||++.++|.. + .++.|+.+ ..|+|+++++..
T Consensus 465 D~~~~dD~LG~~~~~L~~---g-~~~~~~~l-------------~~G~l~~~~~~~ 503 (540)
T 3nsj_A 465 DYGWDDDLLGSCDRSPHS---G-FHEVTCEL-------------NHGRVKFSYHAK 503 (540)
T ss_dssp CSSSCCEEEEEEEECCCS---E-EEEEEEEC-------------SSSEEEEEEEEE
T ss_pred CCCCCCCEEEEEEEEeeC---C-cEEEEEEc-------------CCeEEEEEEEEE
Confidence 999999999999999882 2 35566654 368888887654
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-14 Score=155.13 Aligned_cols=147 Identities=24% Similarity=0.377 Sum_probs=114.7
Q ss_pred ccceeeeCCcccccC--CCCCcc---CCCCeEEEEEEEEEcCCCCcCCC--CCCCCcEEEEEEeCC--cCCceeeEeeCC
Q 009539 228 VANMYLWPKTLEVPI--LDPSKA---YRRPVGILHVKVVKAMNLKKKDL--LGASDPYVKLKITED--KLPSKKTTVKHK 298 (532)
Q Consensus 228 ~~~~~v~P~~~~~~l--~~~~~~---~~~~~g~L~V~v~~A~~L~~~d~--~g~~dpyv~v~~~~~--~~~~~~T~v~~~ 298 (532)
-+++++.|..+..+- +++... .....+.|+|+|++|++|+..+. .|.+||||++++.+. ....+||+++++
T Consensus 466 ~~GYvlKP~~lr~~~~~f~p~~~~~~~~~~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ 545 (624)
T 1djx_A 466 GCGYVLKPAFLRDPNTTFNSRALTQGPWWRPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITN 545 (624)
T ss_dssp GCSEEECCGGGGCTTCCCCTTSCCSSTTCCCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTT
T ss_pred CCccEECCHHHcCCCCCcCcccccccCCccceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccC
Confidence 478888899887653 233221 22467899999999999999884 688999999999763 223469999998
Q ss_pred C-CCceeecEEEEEeeCCCCCEEEEEEEEccCCCCCCeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCC-ccccEE
Q 009539 299 N-LNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNE-KSRGQL 376 (532)
Q Consensus 299 t-~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~-~~~G~l 376 (532)
+ .||+|||+|.|.+..+....|+|+|||+|..++|++||++.++|.++..+. .|++|... .+. -..|.|
T Consensus 546 ng~NP~WnE~f~F~v~~~el~~L~~~V~D~D~~~~dd~iG~~~ipl~~L~~G~---r~v~L~d~------~g~~~~~~~L 616 (624)
T 1djx_A 546 NGFNPRWDMEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGY---RHVHLLSK------NGDQHPSATL 616 (624)
T ss_dssp CSSSCEEEEEEEEEESCGGGCEEEEEEEECCSSSCCEEEEEEEEEGGGBCCEE---EEEEEECT------TSCEEEEEEE
T ss_pred CCCCCccCceEEEEEecCCCCEEEEEEEEcCCCCCCceeEEEEEEHHHcCCCc---EEEeCCCC------CcCCCCceEE
Confidence 7 999999999999987766799999999999999999999999999998752 46666331 112 246788
Q ss_pred EEEEEEE
Q 009539 377 VVEFIYK 383 (532)
Q Consensus 377 ~l~l~~~ 383 (532)
.+.+.|.
T Consensus 617 ~v~i~~~ 623 (624)
T 1djx_A 617 FVKISIQ 623 (624)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 8888774
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=2e-14 Score=123.72 Aligned_cols=111 Identities=23% Similarity=0.288 Sum_probs=85.4
Q ss_pred CceEEEEEEeeeecCCCCCCCCCEEEEEEcCeeEEEeeec-CCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCC
Q 009539 410 GGGLLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVK-KNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLH 488 (532)
Q Consensus 410 ~~g~L~v~i~~a~~L~~~~~~dpyv~v~~~~~~~kT~vv~-~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~ 488 (532)
..+.|.|+|++|++++..+.+||||+++ ++..||++++ ++.||+|||.|.|.+.+. ...|.++|||++ ++
T Consensus 3 ~~~~L~V~V~~A~~l~~~g~~DPYv~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~--~~~L~~~V~D~d-----~~ 73 (131)
T 2cjt_A 3 VMSLLCVGVKKAKFDGAQEKFNTYVTLK--VQNVKSTTIAVRGSQPSWEQDFMFEINRL--DLGLTVEVWNKG-----LI 73 (131)
T ss_dssp CCEEEEEEEEEEECSSCGGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEEECCC--SSEEEEEEEECC-----SS
T ss_pred cceEEEEEEEEeECCCCCCCcCeEEEEE--ecCEEEeEecCCCCCceECCEEEEEEeCC--CCeEEEEEEECC-----CC
Confidence 4689999999999997778899999999 3445666555 799999999999999863 457999999997 35
Q ss_pred CCceeEEEEEechhhhccc--eeceEEEeCCC--------------CCeEEEEEEEE
Q 009539 489 PKETLGYIDINLSDVVSNK--RINEKYHLIDS--------------KNGRIQIELQW 529 (532)
Q Consensus 489 ~d~~lG~~~i~L~~l~~~~--~~~~~~~L~~~--------------~~G~i~l~~~w 529 (532)
.|++||++.++|+++.... ...+|.++.-. ..+.+.+.++|
T Consensus 74 ~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~p~~~~~~~~~~~ 130 (131)
T 2cjt_A 74 WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF 130 (131)
T ss_dssp CEEEEEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEE
T ss_pred CCCeEEEEEEEHHHhhhcCCCCccccEEcccccccCCCcCcceECCCccEEEEEEEe
Confidence 7999999999999987643 12245444211 13557777776
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-14 Score=154.34 Aligned_cols=117 Identities=21% Similarity=0.452 Sum_probs=102.7
Q ss_pred CCceEEEEEEeeeecCCCC---CCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcccccc
Q 009539 409 AGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIG 485 (532)
Q Consensus 409 ~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~ 485 (532)
...|.|.|+|++|++|+.. +.+||||+++++++.++|++++++.||+|||.|.|.+... ....+.++|||++.
T Consensus 384 ~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~-~~~~l~~~v~d~d~--- 459 (510)
T 3jzy_A 384 SGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDL-YQDVLCLTLFDRDQ--- 459 (510)
T ss_dssp --CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCT-TTCEEEEEEEECCS---
T ss_pred CCCceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCC-CCCEEEEEEEeCCC---
Confidence 3578999999999999763 6899999999999999999999999999999999999765 45689999999986
Q ss_pred CCCCCceeEEEEEechhhhccce----eceEEEeCCCCCeEEEEEEEEE
Q 009539 486 LLHPKETLGYIDINLSDVVSNKR----INEKYHLIDSKNGRIQIELQWR 530 (532)
Q Consensus 486 ~~~~d~~lG~~~i~L~~l~~~~~----~~~~~~L~~~~~G~i~l~~~w~ 530 (532)
++.|++||++.++|+++..+.. ...|++|.+..+|+|.++++++
T Consensus 460 -~~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~G~i~l~~~l~ 507 (510)
T 3jzy_A 460 -FSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVPTGEVWVRFDLQ 507 (510)
T ss_dssp -SSSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSSSSCEEEEEEEEE
T ss_pred -CCCCCceEEEEEEHHHhccccCCCCceeeeecCCCCCCceEEEEEEEE
Confidence 6789999999999999987543 6799999988899999988765
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=99.57 E-value=3.6e-15 Score=161.88 Aligned_cols=108 Identities=23% Similarity=0.397 Sum_probs=98.3
Q ss_pred CCeEEEEEEEEEcCCCCc---CCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEc
Q 009539 251 RPVGILHVKVVKAMNLKK---KDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDW 327 (532)
Q Consensus 251 ~~~g~L~V~v~~A~~L~~---~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~ 327 (532)
.+.|.|+|+|++|++|+. +|..|++||||++++.+.....+||+++++++||+|||+|.|.+..+..+.|+|+|||+
T Consensus 15 ~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~ 94 (749)
T 1cjy_A 15 QYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDA 94 (749)
T ss_dssp CCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEEC
T ss_pred CCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEEC
Confidence 468999999999999998 88889999999999987554567999999999999999999999876678999999999
Q ss_pred cCCCCCCeeEEEEEeCccCCCCCCeEEEEecc
Q 009539 328 EQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 359 (532)
Q Consensus 328 d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~ 359 (532)
|..+ |++||++.+++.++..+.....|++|.
T Consensus 95 D~~~-ddfIG~v~I~L~~L~~g~~~~~w~~L~ 125 (749)
T 1cjy_A 95 NYVM-DETLGTATFTVSSMKVGEKKEVPFIFN 125 (749)
T ss_dssp CSSS-CEEEEEECCBSTTSCTTCCCCEEEEET
T ss_pred CCCC-CceeEEEEEEHHHcCCCCceEEEEecC
Confidence 9998 999999999999999888788888874
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=5.5e-14 Score=126.05 Aligned_cols=87 Identities=23% Similarity=0.329 Sum_probs=74.7
Q ss_pred ceEEEEEEeeeecCCCCCCCCCEEEEEEcCeeEEEeeec-CCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCCC
Q 009539 411 GGLLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVK-KNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHP 489 (532)
Q Consensus 411 ~g~L~v~i~~a~~L~~~~~~dpyv~v~~~~~~~kT~vv~-~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~ 489 (532)
.+.|+|+|++|++++..+.+||||+++ ++..||++++ ++.||+|||.|.|.+.+. ...|.|+|||++ ++.
T Consensus 13 ~~~L~V~V~~A~~l~~~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~--~~~L~~~V~D~d-----~~~ 83 (167)
T 2cjs_A 13 LSLLCVGVKKAKFDGAQEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRL--DLGLTVEVWNKG-----LIW 83 (167)
T ss_dssp CCEEEEEEEEEECSSCGGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCT--TSEEEEEEEECC-----SSC
T ss_pred eEEEEEEEEEEECCCCCCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCC--CCEEEEEEEECC-----CCC
Confidence 679999999999997678899999999 4456777765 699999999999999863 457999999997 357
Q ss_pred CceeEEEEEechhhhcc
Q 009539 490 KETLGYIDINLSDVVSN 506 (532)
Q Consensus 490 d~~lG~~~i~L~~l~~~ 506 (532)
|++||++.++|+++...
T Consensus 84 dd~iG~~~i~L~~l~~~ 100 (167)
T 2cjs_A 84 DTMVGTVWIPLRTIRQS 100 (167)
T ss_dssp CEEEEEEEEEGGGSCBC
T ss_pred CceEEEEEEEHHHhccc
Confidence 99999999999998764
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.7e-13 Score=144.41 Aligned_cols=110 Identities=25% Similarity=0.358 Sum_probs=93.1
Q ss_pred CceEEEEEEeeeecCCC--CCCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCC
Q 009539 410 GGGLLVVIVHEAQDVEG--KHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 487 (532)
Q Consensus 410 ~~g~L~v~i~~a~~L~~--~~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~ 487 (532)
..|.|.|+|++|++|+. .+.+||||++++++++.||++++++.||+|||.|.|.+...+..+.|.|+|||+|. +
T Consensus 392 ~~~~L~V~V~~A~~L~~D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~----~ 467 (540)
T 3nsj_A 392 GLAHLVVSNFRAEHLWGDYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADY----G 467 (540)
T ss_dssp TEEEEEEEEEEEESCCCSSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCS----S
T ss_pred cccEEEEEEEEccCCCcccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCC----C
Confidence 47899999999999986 35799999999999999999999999999999999986543345689999999986 5
Q ss_pred CCCceeEEEEEechhhhccceeceEEEeCCCCCeEEEEEEEEE
Q 009539 488 HPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQWR 530 (532)
Q Consensus 488 ~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~w~ 530 (532)
+.|++||++.++|. .+....|++|. .|.|+++++..
T Consensus 468 ~~dD~LG~~~~~L~----~g~~~~~~~l~---~G~l~~~~~~~ 503 (540)
T 3nsj_A 468 WDDDLLGSCDRSPH----SGFHEVTCELN---HGRVKFSYHAK 503 (540)
T ss_dssp SCCEEEEEEEECCC----SEEEEEEEECS---SSEEEEEEEEE
T ss_pred CCCCEEEEEEEEee----CCcEEEEEEcC---CeEEEEEEEEE
Confidence 67899999999987 23457889875 67888887653
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.8e-14 Score=151.52 Aligned_cols=127 Identities=17% Similarity=0.258 Sum_probs=22.3
Q ss_pred CeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCC---CCceeecEEEEEeeCCCCCEEEEEEEEc-
Q 009539 252 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKN---LNPEWNEEYNFTVRDPESQAVELAVYDW- 327 (532)
Q Consensus 252 ~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t---~nP~Wne~f~f~v~~~~~~~L~v~v~d~- 327 (532)
..|.|+|+|++|++|+++| ||||++++++... .||+++++| .||+|||+|.|.+... ...|.++|||+
T Consensus 9 ~~~~L~V~VieAk~L~~~d-----dpYv~v~l~~~~~--~kT~v~~kt~~glnP~WnE~F~f~~~~~-~~~L~v~V~d~~ 80 (483)
T 3bxj_A 9 VDNVLKLWIIEARELPPKK-----RYYCELCLDDMLY--ARTTSKPRSASGDTVFWGEHFEFNNLPA-VRALRLHLYRDS 80 (483)
T ss_dssp EEECC----------------------------------------------------CCEECC-----------------
T ss_pred eccEEEEEEEEcCCcCCCC-----CCeEEEEECCeEE--eeeeEEeCCCCCCCCccccEEEEecCCC-ccEEEEEEEecC
Confidence 4678999999999999876 9999999987543 589999999 9999999999987543 58899999994
Q ss_pred c---CCCCCCeeEEEEEeCccCCCCCCeEEEEecccccccC-----------------CCCCCccccEEEEEEEEEEcc
Q 009539 328 E---QVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLN-----------------DGQNEKSRGQLVVEFIYKPFK 386 (532)
Q Consensus 328 d---~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~-----------------~~~~~~~~G~l~l~l~~~p~~ 386 (532)
| ..++|++||++.+++.++..+...+.|++|....... ..++....|.|++++.|.+..
T Consensus 81 d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~~~~ 159 (483)
T 3bxj_A 81 DKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMS 159 (483)
T ss_dssp --------------------------CCEECC--------------------------------------CEEEEEECC
T ss_pred CccccCCCCceEEEEEEEHHHhcCCCCCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEEEeeeee
Confidence 4 3678999999999999999887888898884322100 001224579999999998764
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=99.39 E-value=8.7e-13 Score=143.31 Aligned_cols=109 Identities=18% Similarity=0.408 Sum_probs=94.1
Q ss_pred CCceEEEEEEeeeecCCC---C---CCCCCEEEEEEcC---eeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEE
Q 009539 409 AGGGLLVVIVHEAQDVEG---K---HHTNPYARILFRG---EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCS 479 (532)
Q Consensus 409 ~~~g~L~v~i~~a~~L~~---~---~~~dpyv~v~~~~---~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d 479 (532)
...+.|.|+|++|++|+. . +.+||||++++++ +++||++++++.||+|||+|+|.+... ....|.|+|||
T Consensus 15 ~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~-~~~~L~~~V~D 93 (749)
T 1cjy_A 15 QYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPN-QENVLEITLMD 93 (749)
T ss_dssp CCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTT-SCCBCEEEEEE
T ss_pred CCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCC-CCCEEEEEEEE
Confidence 357999999999999987 3 6899999999984 577999999999999999999999875 45689999999
Q ss_pred ccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCCCeEEEE
Q 009539 480 VSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQI 525 (532)
Q Consensus 480 ~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l 525 (532)
++. ++ |++||++.++|.++..+....+||+|... +++.+
T Consensus 94 ~D~----~~-ddfIG~v~I~L~~L~~g~~~~~w~~L~~~--~e~~l 132 (749)
T 1cjy_A 94 ANY----VM-DETLGTATFTVSSMKVGEKKEVPFIFNQV--TEMVL 132 (749)
T ss_dssp CCS----SS-CEEEEEECCBSTTSCTTCCCCEEEEETTT--EEEEE
T ss_pred CCC----CC-CceeEEEEEEHHHcCCCCceEEEEecCCC--ceEee
Confidence 986 57 99999999999999877777899999753 44443
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.36 E-value=5.8e-14 Score=147.53 Aligned_cols=117 Identities=12% Similarity=0.212 Sum_probs=20.9
Q ss_pred CceEEEEEEeeeecCCCCCCCCCEEEEEEcCe-eEEEeeecCC---CCCcccceEEEEecCCCCCCeEEEEEEEc-cccc
Q 009539 410 GGGLLVVIVHEAQDVEGKHHTNPYARILFRGE-ERKTKHVKKN---RDPRWEEEFQFMLEEPPTNDRLHVEVCSV-SSRI 484 (532)
Q Consensus 410 ~~g~L~v~i~~a~~L~~~~~~dpyv~v~~~~~-~~kT~vv~~t---~nP~w~e~f~f~v~~~~~~~~l~v~V~d~-~~~~ 484 (532)
..+.|+|+|++|++|+.++ ||||+++++++ ..||+++++| .||+|||.|+|.+... .+.+.++|||+ +..
T Consensus 9 ~~~~L~V~VieAk~L~~~d--dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~--~~~L~v~V~d~~d~~- 83 (483)
T 3bxj_A 9 VDNVLKLWIIEARELPPKK--RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPA--VRALRLHLYRDSDKK- 83 (483)
T ss_dssp EEECC-----------------------------------------------CCEECC----------------------
T ss_pred eccEEEEEEEEcCCcCCCC--CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCC--ccEEEEEEEecCCcc-
Confidence 4678999999999999864 99999999886 4599999999 9999999999997543 36899999995 310
Q ss_pred cCCCCCceeEEEEEechhhhccceeceEEEeCCC---------------------------CCeEEEEEEEEEe
Q 009539 485 GLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS---------------------------KNGRIQIELQWRT 531 (532)
Q Consensus 485 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~---------------------------~~G~i~l~~~w~p 531 (532)
+.+++|++||++.++++++..+...++||+|.+. ..|.|+|+++|.+
T Consensus 84 ~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~~ 157 (483)
T 3bxj_A 84 RKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQT 157 (483)
T ss_dssp -----------------------CCEECC--------------------------------------CEEEEEE
T ss_pred ccCCCCceEEEEEEEHHHhcCCCCCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEEEeee
Confidence 0146799999999999999887778899999532 1489999999976
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=99.35 E-value=5.9e-12 Score=135.71 Aligned_cols=114 Identities=18% Similarity=0.296 Sum_probs=94.9
Q ss_pred CCceEEEEEEeeeecCCCC-----CCCCCEEEEEEcC-----eeEEEeeecCC-CCCcccceEEEEecCCCCCCeEEEEE
Q 009539 409 AGGGLLVVIVHEAQDVEGK-----HHTNPYARILFRG-----EERKTKHVKKN-RDPRWEEEFQFMLEEPPTNDRLHVEV 477 (532)
Q Consensus 409 ~~~g~L~v~i~~a~~L~~~-----~~~dpyv~v~~~~-----~~~kT~vv~~t-~nP~w~e~f~f~v~~~~~~~~l~v~V 477 (532)
...+.|+|+|++|++|+.. +.+||||+|.+.+ .++||++++++ .||+|||+|+|.+..+ ....|.++|
T Consensus 494 ~~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~-el~~L~~~V 572 (624)
T 1djx_A 494 WRPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVP-DLALVRFMV 572 (624)
T ss_dssp CCCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCG-GGCEEEEEE
T ss_pred ccceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecC-CCCEEEEEE
Confidence 3678999999999999863 5799999999965 46799999997 9999999999999875 335899999
Q ss_pred EEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCC-----CeEEEEEEEEE
Q 009539 478 CSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK-----NGRIQIELQWR 530 (532)
Q Consensus 478 ~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~w~ 530 (532)
||++. +++|++||++.++|..+..+ .+|++|.+.. .+.|.|++++.
T Consensus 573 ~D~D~----~~~dd~iG~~~ipl~~L~~G---~r~v~L~d~~g~~~~~~~L~v~i~~~ 623 (624)
T 1djx_A 573 EDYDS----SSKNDFIGQSTIPWNSLKQG---YRHVHLLSKNGDQHPSATLFVKISIQ 623 (624)
T ss_dssp EECCS----SSCCEEEEEEEEEGGGBCCE---EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred EEcCC----CCCCceeEEEEEEHHHcCCC---cEEEeCCCCCcCCCCceEEEEEEEEE
Confidence 99985 67899999999999998653 3689997653 37778887764
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=3.9e-11 Score=132.38 Aligned_cols=144 Identities=17% Similarity=0.271 Sum_probs=106.0
Q ss_pred ccceeeeCCcccccC--CCCCcc---CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc---CCceeeEeeCC-
Q 009539 228 VANMYLWPKTLEVPI--LDPSKA---YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK---LPSKKTTVKHK- 298 (532)
Q Consensus 228 ~~~~~v~P~~~~~~l--~~~~~~---~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~---~~~~~T~v~~~- 298 (532)
-+++++.|..|..+. +++... .......|.|+|++|++|+.. .+||||+|.+.+.. ..+++|+++++
T Consensus 694 ~cGYVLKP~~lr~~~~~f~p~~~~~~~~~~~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~N 769 (885)
T 3ohm_B 694 RSGYLLKPEFMRRPDKSFDPFTEVIVDGIVANALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGN 769 (885)
T ss_dssp GCSEEECCGGGTCTTCCCCTTCSSCCTTCCCEEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSC
T ss_pred ceeeeecCHHHcCCCcCcCCCcCcccCcccceEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCC
Confidence 588999999887542 233221 122356899999999999853 58999999998632 22358998875
Q ss_pred CCCceeec-EEEEE-eeCCCCCEEEEEEEEccCCCCCCeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEE
Q 009539 299 NLNPEWNE-EYNFT-VRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQL 376 (532)
Q Consensus 299 t~nP~Wne-~f~f~-v~~~~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l 376 (532)
+.||+||| +|.|. +..++...|+|+|||+| +++||++.+||..|..+. ..++|... ....-..|.|
T Consensus 770 glNPvWnEe~F~F~~V~~pela~Lrf~V~D~d----ddfiG~~~lpL~~L~~Gy---R~vpL~~~-----~g~~l~~atL 837 (885)
T 3ohm_B 770 SFNPVWDEEPFDFPKVVLPTLASLRIAAFEEG----GKFVGHRILPVSAIRSGY---HYVCLRNE-----ANQPLCLPAL 837 (885)
T ss_dssp SSSCBCCCCCEEEEEESCGGGCEEEEEEEETT----TEEEEEEEEETTTCCCEE---EEEEEECT-----TSCEEEEEEE
T ss_pred CcCCeeccceeEEeeEEcCCcCEEEEEEEcCC----ccEEeeEEEEHHHcCCCc---eEEEecCC-----CCCccCceEE
Confidence 69999999 69998 76666678999999987 899999999999998763 23555321 0112357899
Q ss_pred EEEEEEEEccC
Q 009539 377 VVEFIYKPFKE 387 (532)
Q Consensus 377 ~l~l~~~p~~~ 387 (532)
.+.+.+.....
T Consensus 838 fv~i~~~~~~~ 848 (885)
T 3ohm_B 838 LIYTEASDYIP 848 (885)
T ss_dssp EEEEEEEECCC
T ss_pred EEEEEEEecCC
Confidence 99999986543
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=99.27 E-value=3.9e-11 Score=132.46 Aligned_cols=139 Identities=19% Similarity=0.281 Sum_probs=102.1
Q ss_pred ccceeeeCCcccccC--CCCCc---cCCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCC---cCCceeeE-eeC-
Q 009539 228 VANMYLWPKTLEVPI--LDPSK---AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED---KLPSKKTT-VKH- 297 (532)
Q Consensus 228 ~~~~~v~P~~~~~~l--~~~~~---~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~---~~~~~~T~-v~~- 297 (532)
-+++++.|..|..+- +++.. ......|.|.|+|++|++|+. +++||||++.+.+. ..+++||+ +++
T Consensus 647 ~cGYVlKP~~lr~~~~~f~p~~~~~~~~~~~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~ 722 (799)
T 2zkm_X 647 QSGYLLKHEFMRRPDKQFNPFSVDRIDVVVATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPST 722 (799)
T ss_dssp GCSEEECCGGGTCTTSCCCTTSCCTTTTTTCEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSS
T ss_pred CCCceECCHHHhCCCccCCCcccccccceeeeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccC
Confidence 478999999887542 23322 122357899999999999985 46899999999652 22346898 776
Q ss_pred CCCCceeec-EEEE-EeeCCCCCEEEEEEEEccCCCCCCeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCC-cccc
Q 009539 298 KNLNPEWNE-EYNF-TVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNE-KSRG 374 (532)
Q Consensus 298 ~t~nP~Wne-~f~f-~v~~~~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~-~~~G 374 (532)
++.||+||| +|.| .+..++...|+|+|||+| +++||++.+|+..|..+ ..+++|... .+. -..+
T Consensus 723 n~~NPvWnEe~f~F~~v~~~el~~Lr~~V~D~d----~d~iG~~~ipl~~L~~G---~r~v~L~~~------~g~~~~~~ 789 (799)
T 2zkm_X 723 NSINPVWKEEPFVFEKILMPELASLRVAVMEEG----NKFLGHRIIPINALNSG---YHHLCLHSE------SNMPLTMP 789 (799)
T ss_dssp CCSSCBCCCCCEEEEEESSGGGCEEEEEEEETT----TEEEEEEEEEGGGBCCE---EEEEEEECT------TCCEEEEE
T ss_pred CCCCCeeecceEEEEEEccCCccEEEEEEEEeC----CCccceEeeehhhcCCC---cEEEeccCC------CCCCCCce
Confidence 579999999 6999 887666679999999986 79999999999999865 335555321 111 2457
Q ss_pred EEEEEEEEE
Q 009539 375 QLVVEFIYK 383 (532)
Q Consensus 375 ~l~l~l~~~ 383 (532)
.|.+.+.+.
T Consensus 790 ~Lfv~i~~~ 798 (799)
T 2zkm_X 790 ALFIFLEMK 798 (799)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 777777663
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.25 E-value=7.7e-12 Score=137.32 Aligned_cols=107 Identities=34% Similarity=0.559 Sum_probs=92.4
Q ss_pred eEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCC--cCCceeeEeeCCCCCceeecEEEEEeeCCC-CCEEEEEEEEccC
Q 009539 253 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDPE-SQAVELAVYDWEQ 329 (532)
Q Consensus 253 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~L~v~v~d~d~ 329 (532)
.+.|.|+|.+|++|..+|..|.+||||++++.+. ...+.+|+++++++||+|||+|.|.+.... ...|.++|||+|.
T Consensus 171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~ 250 (674)
T 3pfq_A 171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL 250 (674)
T ss_dssp SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCS
T ss_pred cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeeccc
Confidence 5789999999999999999999999999999543 234579999999999999999999987543 4579999999999
Q ss_pred CCCCCeeEEEEEeCccCCCCCCeEEEEeccc
Q 009539 330 VGKHDKMGMNVVPLKELTPEEPSVKTLDLLK 360 (532)
Q Consensus 330 ~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~ 360 (532)
.++|++||++.+++.++.... ...|+.+..
T Consensus 251 ~~~dd~iG~~~i~l~~l~~~~-~~~w~~Lls 280 (674)
T 3pfq_A 251 TSRNDFMGSLSFGISELQKAG-VDGWFKLLS 280 (674)
T ss_dssp SSCCEECCBCCCBTTHHHHCC-EEEEEECBC
T ss_pred ccccccccccccchhhhccCC-cccceeecc
Confidence 999999999999999998654 477887754
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.21 E-value=4.5e-11 Score=131.19 Aligned_cols=104 Identities=23% Similarity=0.517 Sum_probs=89.2
Q ss_pred ceEEEEEEeeeecCCCC---CCCCCEEEEEE-----cCeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccc
Q 009539 411 GGLLVVIVHEAQDVEGK---HHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSS 482 (532)
Q Consensus 411 ~g~L~v~i~~a~~L~~~---~~~dpyv~v~~-----~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~ 482 (532)
.+.|.|++.+|++|... +.+||||++++ ...+++|++++++.||.|||.|.|.+........+.++|||++.
T Consensus 171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~ 250 (674)
T 3pfq_A 171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL 250 (674)
T ss_dssp SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCS
T ss_pred cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeeccc
Confidence 57899999999999763 68999999999 34567999999999999999999999865445579999999986
Q ss_pred cccCCCCCceeEEEEEechhhhccceeceEEEeCCCC
Q 009539 483 RIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK 519 (532)
Q Consensus 483 ~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~ 519 (532)
++.|++||++.++++++.... ..+||.|....
T Consensus 251 ----~~~dd~iG~~~i~l~~l~~~~-~~~w~~Lls~~ 282 (674)
T 3pfq_A 251 ----TSRNDFMGSLSFGISELQKAG-VDGWFKLLSQE 282 (674)
T ss_dssp ----SSCCEECCBCCCBTTHHHHCC-EEEEEECBCTT
T ss_pred ----ccccccccccccchhhhccCC-cccceeecccc
Confidence 678999999999999998754 48999997543
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=99.21 E-value=9.9e-11 Score=128.55 Aligned_cols=144 Identities=19% Similarity=0.312 Sum_probs=104.4
Q ss_pred ccceeeeCCcccccC--CCCCcc---CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcC----CceeeEeeCC
Q 009539 228 VANMYLWPKTLEVPI--LDPSKA---YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKL----PSKKTTVKHK 298 (532)
Q Consensus 228 ~~~~~v~P~~~~~~l--~~~~~~---~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~----~~~~T~v~~~ 298 (532)
-+++++.|..|..+- +++... .....+.|.|+|++|++|+.+ .+||||++.+.+... .+++|+++++
T Consensus 619 ~cGYVLKP~~lr~~~~~f~p~~~~~~~~~~~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~ 694 (816)
T 3qr0_A 619 CSGYLLKPEFMRKLDKRFDPFTESTVDGVVAGTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIEN 694 (816)
T ss_dssp TCSEEECCHHHHCTTCCCCTTCCSCCTTSCCEEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCS
T ss_pred ceeeeecChHhcCCCcccCCCCCCCcCCccceEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecC
Confidence 478889998876532 232221 122458999999999999853 589999999986321 2458998875
Q ss_pred -CCCceeecE-EEEE-eeCCCCCEEEEEEEEccCCCCCCeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccE
Q 009539 299 -NLNPEWNEE-YNFT-VRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQ 375 (532)
Q Consensus 299 -t~nP~Wne~-f~f~-v~~~~~~~L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~ 375 (532)
+.||+|||+ |.|. +..++...|+|+|||++ +++||++.+||..|..+- ..++|... ....-..+.
T Consensus 695 nglNPvWNE~~F~F~~v~~pela~Lrf~V~D~d----ddfiG~~~ipL~~L~~Gy---R~vpL~~~-----~g~~~~~at 762 (816)
T 3qr0_A 695 NGMDPYYDEKVFVFKKVVLPDLAVVRIIVSEEN----GKFIGHRVMPLDGIKPGY---RHVPLRNE-----SNRPLGLAS 762 (816)
T ss_dssp CSSCCBCCCCCEEEEEESCGGGCEEEEEEEETT----SCEEEEEEEESTTCCCEE---EEEEEECT-----TSCEEEEEE
T ss_pred CCCCCeEcCceeEEccccCCCccEEEEEEEecC----CCeeeEEEEEHHHcCCcc---eEEEEeCC-----CCCCCCceE
Confidence 699999998 9998 76666679999999985 789999999999998763 34555321 001224478
Q ss_pred EEEEEEEEEccC
Q 009539 376 LVVEFIYKPFKE 387 (532)
Q Consensus 376 l~l~l~~~p~~~ 387 (532)
|.+.+.+.....
T Consensus 763 Lfv~i~~~~~~~ 774 (816)
T 3qr0_A 763 VFAHIVAKDYVS 774 (816)
T ss_dssp EEEEEEEEECCC
T ss_pred EEEEEEEEecCc
Confidence 888888876543
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=99.03 E-value=2.5e-09 Score=88.01 Aligned_cols=114 Identities=15% Similarity=0.238 Sum_probs=86.3
Q ss_pred CeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcC-Cceee-EeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccC
Q 009539 252 PVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKL-PSKKT-TVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQ 329 (532)
Q Consensus 252 ~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~-~~~~T-~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~ 329 (532)
..+.|+|.+.++.--+-+......||||.+.+..... ...+| ..++.|..|+|||+|.-.+++ .+.|.+.|++...
T Consensus 4 m~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a~ 81 (126)
T 1yrk_A 4 MAPFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAAE 81 (126)
T ss_dssp CCCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT--TCEEEEEEEEETT
T ss_pred cCccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC--CEEEEEEEEcCCC
Confidence 3457888886665322222223579999999975332 12365 778899999999999999876 5899999997653
Q ss_pred CCCCCeeEEEEEeCccCC-----CCCCeEEEEecccccccCCCCCCccccEEEEEEEEE
Q 009539 330 VGKHDKMGMNVVPLKELT-----PEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 383 (532)
Q Consensus 330 ~~~d~~iG~~~i~l~~l~-----~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~ 383 (532)
++++.|++++++|. .+...+.|++| ++.|+|++.+.|+
T Consensus 82 ----~fvAn~tV~~edL~~~c~~~~g~~e~WvdL------------eP~Gkl~~~i~~~ 124 (126)
T 1yrk_A 82 ----EPVSEVTVGVSVLAERCKKNNGKAEFWLDL------------QPQAKVLMSVQYF 124 (126)
T ss_dssp ----EEEEEEEEEHHHHHHHHHTTTTEEEEEEEC------------BSSCEEEEEEEEE
T ss_pred ----CeeeEEEEEHHHHHhhhccCCCceEEEEec------------ccCcEEEEEEEEe
Confidence 89999999999998 34456789886 5699999999987
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=98.99 E-value=3.4e-09 Score=116.47 Aligned_cols=107 Identities=18% Similarity=0.272 Sum_probs=86.0
Q ss_pred ceEEEEEEeeeecCCCCCCCCCEEEEEEcC-------eeEEEeeecC-CCCCcccce-EEEE-ecCCCCCCeEEEEEEEc
Q 009539 411 GGLLVVIVHEAQDVEGKHHTNPYARILFRG-------EERKTKHVKK-NRDPRWEEE-FQFM-LEEPPTNDRLHVEVCSV 480 (532)
Q Consensus 411 ~g~L~v~i~~a~~L~~~~~~dpyv~v~~~~-------~~~kT~vv~~-t~nP~w~e~-f~f~-v~~~~~~~~l~v~V~d~ 480 (532)
.+.|+|+|++|++|+.. .+||||+|.+.+ +++||+++++ +.||+|||+ |+|. +..+ ....|.++|||+
T Consensus 649 ~~~L~V~Visaq~L~~~-~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~p-ela~Lrf~V~D~ 726 (816)
T 3qr0_A 649 AGTIEIKIISAQFLSDK-QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLP-DLAVVRIIVSEE 726 (816)
T ss_dssp CEEEEEEEEEEECCCSS-CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCG-GGCEEEEEEEET
T ss_pred ceEEEEEEEEcccCCCC-CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCC-CccEEEEEEEec
Confidence 57899999999999864 789999999976 4669999986 699999998 9998 7654 335899999997
Q ss_pred cccccCCCCCceeEEEEEechhhhccceeceEEEeCCCC-----CeEEEEEEEEE
Q 009539 481 SSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK-----NGRIQIELQWR 530 (532)
Q Consensus 481 ~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~w~ 530 (532)
+ +++||++.++|+.|..+ -++.+|.+.. .+.|.+.+..+
T Consensus 727 d--------ddfiG~~~ipL~~L~~G---yR~vpL~~~~g~~~~~atLfv~i~~~ 770 (816)
T 3qr0_A 727 N--------GKFIGHRVMPLDGIKPG---YRHVPLRNESNRPLGLASVFAHIVAK 770 (816)
T ss_dssp T--------SCEEEEEEEESTTCCCE---EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred C--------CCeeeEEEEEHHHcCCc---ceEEEEeCCCCCCCCceEEEEEEEEE
Confidence 4 58999999999998653 3568887653 26666666554
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.98 E-value=3.4e-09 Score=88.32 Aligned_cols=114 Identities=16% Similarity=0.236 Sum_probs=88.4
Q ss_pred CeEEEEEEEEEcCCCCcCC-CCCCCCcEEEEEEeCCcC-Cceee-EeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEcc
Q 009539 252 PVGILHVKVVKAMNLKKKD-LLGASDPYVKLKITEDKL-PSKKT-TVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWE 328 (532)
Q Consensus 252 ~~g~L~V~v~~A~~L~~~d-~~g~~dpyv~v~~~~~~~-~~~~T-~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d 328 (532)
..+.|+|.+.++.--+-.. .....||||.+.+..... ...+| ..++.|..|+|||+|.-.+++ .+.|.|.|++..
T Consensus 8 m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a 85 (138)
T 2enj_A 8 MSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK--GRVMQIIVKGKN 85 (138)
T ss_dssp CCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS--SCEEEEEEECSS
T ss_pred cCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC--CeEEEEEEEcCC
Confidence 4567888887776544332 123579999999975422 23577 778889999999999998876 589999999654
Q ss_pred CCCCCCeeEEEEEeCccCC-----CCCCeEEEEecccccccCCCCCCccccEEEEEEEEE
Q 009539 329 QVGKHDKMGMNVVPLKELT-----PEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 383 (532)
Q Consensus 329 ~~~~d~~iG~~~i~l~~l~-----~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~ 383 (532)
. ++++.|++++++|. .+...+.|++| ++.|+|++.+.|+
T Consensus 86 ~----~fVAn~tV~~edL~~~ck~~~g~~e~WvdL------------eP~Gkl~v~i~~~ 129 (138)
T 2enj_A 86 V----DLISETTVELYSLAERCRKNNGKTEIWLEL------------KPQGRMLMNARYF 129 (138)
T ss_dssp C----SCCEEEEEESHHHHHHHHHTTTCEEEEEEC------------BSSCEEEEEEEEC
T ss_pred C----CeeeEEEEEHHHHHhhhccCCCceEEEEec------------ccCcEEEEEEEEE
Confidence 2 89999999999998 44567899886 5699999999996
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=98.97 E-value=3.5e-09 Score=116.91 Aligned_cols=108 Identities=21% Similarity=0.261 Sum_probs=85.6
Q ss_pred CceEEEEEEeeeecCCCCCCCCCEEEEEEcC------eeEEEe-eecC-CCCCcccc-eEEE-EecCCCCCCeEEEEEEE
Q 009539 410 GGGLLVVIVHEAQDVEGKHHTNPYARILFRG------EERKTK-HVKK-NRDPRWEE-EFQF-MLEEPPTNDRLHVEVCS 479 (532)
Q Consensus 410 ~~g~L~v~i~~a~~L~~~~~~dpyv~v~~~~------~~~kT~-vv~~-t~nP~w~e-~f~f-~v~~~~~~~~l~v~V~d 479 (532)
..+.|.|+|++|++|+. +.+||||+|.+.+ +++||+ ++++ +.||+||| .|+| .+..+ ....|.++|+|
T Consensus 676 ~~~~L~V~Visa~~L~~-~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~-el~~Lr~~V~D 753 (799)
T 2zkm_X 676 VATTLSITVISGQFLSE-RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMP-ELASLRVAVME 753 (799)
T ss_dssp TCEEEEEEEEEEESCCS-SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSG-GGCEEEEEEEE
T ss_pred eeeeEEEEEEeccccCc-cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccC-CccEEEEEEEE
Confidence 46899999999999986 5799999999954 256999 8875 69999999 6999 88664 33489999999
Q ss_pred ccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCC-----CeEEEEEEEEE
Q 009539 480 VSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK-----NGRIQIELQWR 530 (532)
Q Consensus 480 ~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~w~ 530 (532)
++ +++||++.++|+.|..+ .++++|.+.. .+.+.|+++++
T Consensus 754 ~d--------~d~iG~~~ipl~~L~~G---~r~v~L~~~~g~~~~~~~Lfv~i~~~ 798 (799)
T 2zkm_X 754 EG--------NKFLGHRIIPINALNSG---YHHLCLHSESNMPLTMPALFIFLEMK 798 (799)
T ss_dssp TT--------TEEEEEEEEEGGGBCCE---EEEEEEECTTCCEEEEEEEEEEEEEE
T ss_pred eC--------CCccceEeeehhhcCCC---cEEEeccCCCCCCCCceEEEEEEEEE
Confidence 85 58999999999998543 3578886643 26666776654
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=98.97 E-value=2.5e-08 Score=82.07 Aligned_cols=108 Identities=12% Similarity=0.243 Sum_probs=85.5
Q ss_pred CceEEEEEEeeeec--CCC-CCCCCCEEEEEEcCee----EEE-eeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcc
Q 009539 410 GGGLLVVIVHEAQD--VEG-KHHTNPYARILFRGEE----RKT-KHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVS 481 (532)
Q Consensus 410 ~~g~L~v~i~~a~~--L~~-~~~~dpyv~v~~~~~~----~kT-~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~ 481 (532)
....|+|.+.++.- |+. ....||||.|.+.... .+| ...++|..|+||+.|.-.+.+. ..|.+.|++..
T Consensus 4 m~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~G---r~l~i~Vfh~a 80 (126)
T 1yrk_A 4 MAPFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYEG---RVIQIVLMRAA 80 (126)
T ss_dssp CCCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCTT---CEEEEEEEEET
T ss_pred cCccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeCC---EEEEEEEEcCC
Confidence 45678888876653 332 2368999999986543 255 7778899999999999999875 68999999653
Q ss_pred ccccCCCCCceeEEEEEechhhhcc-----ceeceEEEeCCCCCeEEEEEEEEE
Q 009539 482 SRIGLLHPKETLGYIDINLSDVVSN-----KRINEKYHLIDSKNGRIQIELQWR 530 (532)
Q Consensus 482 ~~~~~~~~d~~lG~~~i~L~~l~~~-----~~~~~~~~L~~~~~G~i~l~~~w~ 530 (532)
.++++.+++.+.+|.++ ...+-|.+|+ ++|+|++.++|-
T Consensus 81 --------~~fvAn~tV~~edL~~~c~~~~g~~e~WvdLe--P~Gkl~~~i~~~ 124 (126)
T 1yrk_A 81 --------EEPVSEVTVGVSVLAERCKKNNGKAEFWLDLQ--PQAKVLMSVQYF 124 (126)
T ss_dssp --------TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECB--SSCEEEEEEEEE
T ss_pred --------CCeeeEEEEEHHHHHhhhccCCCceEEEEecc--cCcEEEEEEEEe
Confidence 28999999999999954 4567899987 599999999884
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.8e-09 Score=116.66 Aligned_cols=107 Identities=19% Similarity=0.226 Sum_probs=85.8
Q ss_pred ceEEEEEEeeeecCCCCCCCCCEEEEEEcC------eeEEEeeecC-CCCCcccc-eEEEE-ecCCCCCCeEEEEEEEcc
Q 009539 411 GGLLVVIVHEAQDVEGKHHTNPYARILFRG------EERKTKHVKK-NRDPRWEE-EFQFM-LEEPPTNDRLHVEVCSVS 481 (532)
Q Consensus 411 ~g~L~v~i~~a~~L~~~~~~dpyv~v~~~~------~~~kT~vv~~-t~nP~w~e-~f~f~-v~~~~~~~~l~v~V~d~~ 481 (532)
...|.|+|++|++|+.. .+||||+|.+.+ .++||+++++ +.||+||| +|+|. +..+ ....|.++|||++
T Consensus 724 ~~~L~V~Visaq~L~~~-~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~p-ela~Lrf~V~D~d 801 (885)
T 3ohm_B 724 ANALRVKVISGQFLSDR-KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLP-TLASLRIAAFEEG 801 (885)
T ss_dssp CEEEEEEEEEEESCCSS-CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCG-GGCEEEEEEEETT
T ss_pred ceEEEEEEEEeccCccc-CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcC-CcCEEEEEEEcCC
Confidence 45899999999999874 789999999975 2469999986 59999999 69998 7654 3358999999985
Q ss_pred ccccCCCCCceeEEEEEechhhhccceeceEEEeCCCC-----CeEEEEEEEEE
Q 009539 482 SRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK-----NGRIQIELQWR 530 (532)
Q Consensus 482 ~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~w~ 530 (532)
+++||++.++|+.|..+ -+..+|.+.. .|.|.|.+..+
T Consensus 802 --------ddfiG~~~lpL~~L~~G---yR~vpL~~~~g~~l~~atLfv~i~~~ 844 (885)
T 3ohm_B 802 --------GKFVGHRILPVSAIRSG---YHYVCLRNEANQPLCLPALLIYTEAS 844 (885)
T ss_dssp --------TEEEEEEEEETTTCCCE---EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred --------ccEEeeEEEEHHHcCCC---ceEEEecCCCCCccCceEEEEEEEEE
Confidence 58999999999998653 3567886643 37788877765
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.4e-08 Score=83.26 Aligned_cols=108 Identities=13% Similarity=0.212 Sum_probs=86.3
Q ss_pred CceEEEEEEeeeecCC--C--CCCCCCEEEEEEcCee----EEE-eeecCCCCCcccceEEEEecCCCCCCeEEEEEEEc
Q 009539 410 GGGLLVVIVHEAQDVE--G--KHHTNPYARILFRGEE----RKT-KHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSV 480 (532)
Q Consensus 410 ~~g~L~v~i~~a~~L~--~--~~~~dpyv~v~~~~~~----~kT-~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~ 480 (532)
..+.|+|.+.++.--+ . ....||||.|.+.... .+| ..+++|..|+||+.|.-.+.+. ..|.|.|++.
T Consensus 8 m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~G---r~l~i~Vfh~ 84 (138)
T 2enj_A 8 MSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINKG---RVMQIIVKGK 84 (138)
T ss_dssp CCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCSS---CEEEEEEECS
T ss_pred cCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEECC---eEEEEEEEcC
Confidence 4678888887776432 2 3468999999996653 377 7778899999999999999865 6899999954
Q ss_pred cccccCCCCCceeEEEEEechhhhcc-----ceeceEEEeCCCCCeEEEEEEEEE
Q 009539 481 SSRIGLLHPKETLGYIDINLSDVVSN-----KRINEKYHLIDSKNGRIQIELQWR 530 (532)
Q Consensus 481 ~~~~~~~~~d~~lG~~~i~L~~l~~~-----~~~~~~~~L~~~~~G~i~l~~~w~ 530 (532)
. .+++..+++.+.+|+++ ...+-|.+|+ +.|+|++.++|.
T Consensus 85 a--------~~fVAn~tV~~edL~~~ck~~~g~~e~WvdLe--P~Gkl~v~i~~~ 129 (138)
T 2enj_A 85 N--------VDLISETTVELYSLAERCRKNNGKTEIWLELK--PQGRMLMNARYF 129 (138)
T ss_dssp S--------CSCCEEEEEESHHHHHHHHHTTTCEEEEEECB--SSCEEEEEEEEC
T ss_pred C--------CCeeeEEEEEHHHHHhhhccCCCceEEEEecc--cCcEEEEEEEEE
Confidence 2 38999999999999954 3567899997 599999999984
|
| >3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.46 E-value=2.1 Score=38.82 Aligned_cols=57 Identities=11% Similarity=0.177 Sum_probs=41.7
Q ss_pred CceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEEEEEEccCC----CCCCeeEEEEEeCcc
Q 009539 289 PSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYDWEQV----GKHDKMGMNVVPLKE 345 (532)
Q Consensus 289 ~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d~d~~----~~d~~iG~~~i~l~~ 345 (532)
..++|.+...+.+|.|+|++.+.+... ....|.|++++.... .....+|.+.+||-+
T Consensus 77 se~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~ 139 (220)
T 3l4c_A 77 SEYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMR 139 (220)
T ss_dssp SCEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBC
T ss_pred eeEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEccc
Confidence 346888888899999999999988643 356899999875421 122467888777654
|
| >2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=92.22 E-value=1.7 Score=37.13 Aligned_cols=129 Identities=14% Similarity=0.150 Sum_probs=85.1
Q ss_pred CCCCeEEEEEEEEEcCCCCcCC-CCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCC-------CCCEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKD-LLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP-------ESQAV 320 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d-~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~-------~~~~L 320 (532)
...-.+.+.|+|.++.--+..- ..+..+|+.-+.++=-....+.|.+.. +.+|.+|-+-.|.|.-. ....+
T Consensus 13 l~~gEnlfEihi~~~~~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l 91 (156)
T 2yrb_A 13 LERGENLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTI 91 (156)
T ss_dssp CCSSCEEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCE
T ss_pred ccCCCcEEEEEEeEEEEcHHHHhhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCE
Confidence 3445789999999987322111 124457766666654344445666655 88999999888888532 14578
Q ss_pred EEEEEEccCCCCCCeeEEEEEeCccCCCCCCe-EEEEecccccccCCCCCC-ccccEEEEEEEEEEc
Q 009539 321 ELAVYDWEQVGKHDKMGMNVVPLKELTPEEPS-VKTLDLLKNMDLNDGQNE-KSRGQLVVEFIYKPF 385 (532)
Q Consensus 321 ~v~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~-~~~l~l~~~~~~~~~~~~-~~~G~l~l~l~~~p~ 385 (532)
.++++... .+..+.+|.+.|++.++...+.+ ....++.. ..+. ..-|.|.+.++....
T Consensus 92 ~lELhqa~-g~~~~tla~~~I~l~~lLe~~~~i~g~~~L~g------~~g~~~~~G~LeywiRL~~P 151 (156)
T 2yrb_A 92 TLEVHQAY-STEYETIAACQLKFHEILEKSGRIFCTASLIG------TKGDIPNFGTVEYWFRLRVS 151 (156)
T ss_dssp EEEEEEEC-SSCEEEEEEEEECCSHHHHCCSCEEEEEEECB------SSSCCTTSEEEEEEEEEEEC
T ss_pred EEEEEEee-CCCceEEEEEEEEhHHhhCcCCceEEEEEEEc------CCCCcceEEEEEEEEEEecc
Confidence 99998875 34456899999999999866543 23344422 1122 578999999988754
|
| >2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=91.98 E-value=1.9 Score=36.95 Aligned_cols=116 Identities=17% Similarity=0.288 Sum_probs=80.2
Q ss_pred CCceEEEEEEeeeecCCC-----CCCCCCEEEEEE--cC-eeEEEeeecCCCCCcccceEEEEecCCC------CCCeEE
Q 009539 409 AGGGLLVVIVHEAQDVEG-----KHHTNPYARILF--RG-EERKTKHVKKNRDPRWEEEFQFMLEEPP------TNDRLH 474 (532)
Q Consensus 409 ~~~g~L~v~i~~a~~L~~-----~~~~dpyv~v~~--~~-~~~kT~vv~~t~nP~w~e~f~f~v~~~~------~~~~l~ 474 (532)
..-+.+.+.|.++. +.. .+..+|+.-+.+ -. +.+-|.+++ ..+|.+|-+-.|.+.... ....+.
T Consensus 15 ~gEnlfEihi~~~~-~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~ 92 (156)
T 2yrb_A 15 RGENLFEIHINKVT-FSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTIT 92 (156)
T ss_dssp SSCEEEEEEEEEEC-CCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCEE
T ss_pred CCCcEEEEEEeEEE-EcHHHHhhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCEE
Confidence 45678999999886 332 134567555554 33 445566555 899999999999886421 123688
Q ss_pred EEEEEccccccCCCCCceeEEEEEechhhhccc-eeceEEEeCCCC-----CeEEEEEEEEEe
Q 009539 475 VEVCSVSSRIGLLHPKETLGYIDINLSDVVSNK-RINEKYHLIDSK-----NGRIQIELQWRT 531 (532)
Q Consensus 475 v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~-~~~~~~~L~~~~-----~G~i~l~~~w~p 531 (532)
+++..... +.-..||++.|+|.++++++ .+...-+|.+.. -|.++..++++.
T Consensus 93 lELhqa~g-----~~~~tla~~~I~l~~lLe~~~~i~g~~~L~g~~g~~~~~G~LeywiRL~~ 150 (156)
T 2yrb_A 93 LEVHQAYS-----TEYETIAACQLKFHEILEKSGRIFCTASLIGTKGDIPNFGTVEYWFRLRV 150 (156)
T ss_dssp EEEEEECS-----SCEEEEEEEEECCSHHHHCCSCEEEEEEECBSSSCCTTSEEEEEEEEEEE
T ss_pred EEEEEeeC-----CCceEEEEEEEEhHHhhCcCCceEEEEEEEcCCCCcceEEEEEEEEEEec
Confidence 88887743 34569999999999999764 355566776542 488998888874
|
| >2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A* | Back alignment and structure |
|---|
Probab=91.45 E-value=1.8 Score=48.24 Aligned_cols=92 Identities=11% Similarity=0.205 Sum_probs=61.8
Q ss_pred eEEEEEEEEEcCCCCcCCCCCCCCcEEEEEE--eCCcCC-ceeeEeeCCCCCceeecEEEEEee--C-CCCCEEEEEEEE
Q 009539 253 VGILHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKLP-SKKTTVKHKNLNPEWNEEYNFTVR--D-PESQAVELAVYD 326 (532)
Q Consensus 253 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~--~~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~--~-~~~~~L~v~v~d 326 (532)
...++|+|.++.++... ..++-||.+.+ +++... ...|+.+....+|.|||...|++. + |....|.+++|+
T Consensus 216 ~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~ 292 (940)
T 2wxf_A 216 EQPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYA 292 (940)
T ss_dssp CSEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEE
T ss_pred CCceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEE
Confidence 45799999999998654 34577877766 333321 234555555778999999999875 2 447899999999
Q ss_pred ccCC--C----------CCCeeEEEEEeCccCC
Q 009539 327 WEQV--G----------KHDKMGMNVVPLKELT 347 (532)
Q Consensus 327 ~d~~--~----------~d~~iG~~~i~l~~l~ 347 (532)
.... + .+..+|.+.+++-+-.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~ 325 (940)
T 2wxf_A 293 VVEKAKKARSTKKKSKKADCPIAWANLMLFDYK 325 (940)
T ss_dssp EC----------------CEEEEEEEEESBCTT
T ss_pred ecCCccCccccccccccccceEEEEeeeEECCc
Confidence 6321 1 2448999999887654
|
| >3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A | Back alignment and structure |
|---|
Probab=91.01 E-value=2 Score=48.41 Aligned_cols=93 Identities=22% Similarity=0.290 Sum_probs=61.5
Q ss_pred eEEEEEEEEEcCCCCcCCCCCCCCcEEEEEE--eCCcCCc-eeeEeeCCCCCceeecEEEEEee--C-CCCCEEEEEEEE
Q 009539 253 VGILHVKVVKAMNLKKKDLLGASDPYVKLKI--TEDKLPS-KKTTVKHKNLNPEWNEEYNFTVR--D-PESQAVELAVYD 326 (532)
Q Consensus 253 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~--~~~~~~~-~~T~v~~~t~nP~Wne~f~f~v~--~-~~~~~L~v~v~d 326 (532)
...++|+|..+.++.... ....+-||.+.+ |++.... .+|+. ....+|.|||...|.+. + |....|.++||+
T Consensus 354 ~~~f~v~i~~~~~~n~~~-~~~~~~~V~~~l~hG~~~L~~~~~T~~-~~~~~~~Wne~l~f~i~i~dLPr~arL~~tl~~ 431 (1091)
T 3hhm_A 354 NSALRIKILCATYVNVNI-RDIDKIYVRTGIYHGGEPLCDNVNTQR-VPCSNPRWNEWLNYDIYIPDLPRAARLCLSICS 431 (1091)
T ss_dssp CSEEEEEEEEESCCCCCC-SSCCCCCEEEEEESSSCSSCCEECCCC-CCTTSCEEEEEEEEEEEGGGCCTTCEEEEEECC
T ss_pred CCCEEEEEEEecCCCCCc-cccceEEEEEEEEECCEEccCceeccc-cCCCCCCCCeeEEecCccccCChhcEEEEEEEE
Confidence 357899999999886432 234577888777 3443322 23433 34567889999999875 2 447899999998
Q ss_pred ccCC----CCCCeeEEEEEeCccCC
Q 009539 327 WEQV----GKHDKMGMNVVPLKELT 347 (532)
Q Consensus 327 ~d~~----~~d~~iG~~~i~l~~l~ 347 (532)
.... ..+..+|.+.++|-+-.
T Consensus 432 ~~~~~~~~~~~~~lg~~n~~lfd~~ 456 (1091)
T 3hhm_A 432 VKGRKGAKEEHCPLAWGNINLFDYT 456 (1091)
T ss_dssp CCCCC-------CCEEEEEESBCTT
T ss_pred ecCccCcccccceeEEeeeeeEccC
Confidence 6542 12457899888887654
|
| >2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A* | Back alignment and structure |
|---|
Probab=87.51 E-value=1.7 Score=48.48 Aligned_cols=94 Identities=14% Similarity=0.227 Sum_probs=64.0
Q ss_pred ceEEEEEEeeeecCCCCCCCCCEEEEEE--cCee----EEEeeecCCCCCcccceEEEEe--cCCCCCCeEEEEEEEccc
Q 009539 411 GGLLVVIVHEAQDVEGKHHTNPYARILF--RGEE----RKTKHVKKNRDPRWEEEFQFML--EEPPTNDRLHVEVCSVSS 482 (532)
Q Consensus 411 ~g~L~v~i~~a~~L~~~~~~dpyv~v~~--~~~~----~kT~vv~~t~nP~w~e~f~f~v--~~~~~~~~l~v~V~d~~~ 482 (532)
...+.|+|.++.++......+-||++.+ |++. ..|..+....+|.|||-++|.+ .+.|.+..|.++||+...
T Consensus 216 ~~~f~i~i~~~~~~~~~~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~~~~ 295 (940)
T 2wxf_A 216 EQPFSIELIEGRKVNADERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYAVVE 295 (940)
T ss_dssp CSEEEEEEEEEECCCC---CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEEEC-
T ss_pred CCceEEEEEEecccCCCCCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEEecC
Confidence 4688999999999887656677877654 5543 4666666688999999877765 455677899999998631
Q ss_pred c--------ccCCCCCceeEEEEEechhhh
Q 009539 483 R--------IGLLHPKETLGYIDINLSDVV 504 (532)
Q Consensus 483 ~--------~~~~~~d~~lG~~~i~L~~l~ 504 (532)
. .+--..+..+|.+.++|-+-.
T Consensus 296 ~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~ 325 (940)
T 2wxf_A 296 KAKKARSTKKKSKKADCPIAWANLMLFDYK 325 (940)
T ss_dssp ---------------CEEEEEEEEESBCTT
T ss_pred CccCccccccccccccceEEEEeeeEECCc
Confidence 0 000012459999999998754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 532 | ||||
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 3e-27 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 1e-07 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 5e-23 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 2e-05 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 2e-19 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 1e-09 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 3e-19 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 2e-06 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 2e-18 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 2e-06 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 3e-18 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 4e-18 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 3e-07 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 7e-18 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 4e-05 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 8e-18 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 5e-05 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 8e-18 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 2e-04 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 4e-17 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 8e-06 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 2e-16 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 3e-06 | |
| d1dqva1 | 130 | b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus | 2e-16 | |
| d1dqva2 | 145 | b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus | 6e-16 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 1e-15 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 3e-04 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 7e-14 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 3e-07 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 1e-13 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 0.002 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 2e-12 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 4e-08 | |
| d2zkmx2 | 122 | b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human | 1e-11 | |
| d1bdya_ | 123 | b.7.1.1 (A:) Domain from protein kinase C delta {R | 2e-10 | |
| d1bdya_ | 123 | b.7.1.1 (A:) Domain from protein kinase C delta {R | 0.001 |
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 104 bits (261), Expect = 3e-27
Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 10/144 (6%)
Query: 246 SKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWN 305
S P G L V +V A L+ D L DPYV+L K + PEWN
Sbjct: 2 SSGSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQ--KSNVAEGMGTTPEWN 59
Query: 306 EEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLN 365
E + FTV + ++ ++D + + D +G +PL+ + E + N
Sbjct: 60 ETFIFTVSEGTTELK-AKIFDKDVGTEDDAVGEATIPLEPVFVEGS-------IPPTAYN 111
Query: 366 DGQNEKSRGQLVVEFIYKPFKEED 389
++E+ +G++ V +KP
Sbjct: 112 VVKDEEYKGEIWVALSFKPSGPSS 135
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 48.6 bits (115), Expect = 1e-07
Identities = 24/125 (19%), Positives = 46/125 (36%), Gaps = 13/125 (10%)
Query: 412 GLLVVIVHEAQDVEGKH---HTNPYARILFRGEERKTKHV-KKNRDPRWEEEFQFMLEEP 467
G L V++ A+ +E + +PY ++ R +++K+ P W E F F + E
Sbjct: 10 GTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG 69
Query: 468 PTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKN---GRIQ 524
L ++ + + +G I L V I + + G I
Sbjct: 70 --TTELKAKIFDKD----VGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIW 123
Query: 525 IELQW 529
+ L +
Sbjct: 124 VALSF 128
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 92.9 bits (230), Expect = 5e-23
Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Query: 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEY 308
Y L V +++A L D+ G SDPYVK+ + DK +T V K LNP +NE++
Sbjct: 29 YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQF 88
Query: 309 NFTV--RDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 359
F V + + + +AVYD+++ KHD +G VP+ + + + DL
Sbjct: 89 TFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 42.4 bits (99), Expect = 2e-05
Identities = 22/160 (13%), Positives = 53/160 (33%), Gaps = 34/160 (21%)
Query: 362 MDLNDGQNEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEA 421
++ + + E+ G+L Y + L+V + +A
Sbjct: 9 VEKEEPKEEEKLGKLQYSLDYDFQNNQ-------------------------LLVGIIQA 43
Query: 422 QD---VEGKHHTNPYARILFRGEE---RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHV 475
+ ++ ++PY ++ ++ +TK +K +P + E+F F + + V
Sbjct: 44 AELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLV 103
Query: 476 EVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHL 515
R + +G + ++ V E L
Sbjct: 104 MAVYDFDRFS---KHDIIGEFKVPMNTVDFGHVTEEWRDL 140
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 82.4 bits (203), Expect = 2e-19
Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 3/100 (3%)
Query: 254 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKL--PSKKTTVKHKNLNPEWNEEYNFT 311
+L V V A NL D G SDPYVKLK+ D +KT +LNPEWNE + F
Sbjct: 15 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 74
Query: 312 VRDPE-SQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEE 350
+++ + + + + ++DW+ ++D MG + EL
Sbjct: 75 LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG 114
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 54.3 bits (130), Expect = 1e-09
Identities = 26/118 (22%), Positives = 58/118 (49%), Gaps = 13/118 (11%)
Query: 412 GLLVVIVHEAQDV---EGKHHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFM 463
+L+V+V +A+++ + ++PY ++ ++KTK +K + +P W E F+F
Sbjct: 15 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 74
Query: 464 LEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNG 521
L+E + RL VE+ L + +G + +S+ + ++ + L+ + G
Sbjct: 75 LKESDKDRRLSVEIWD----WDLTSRNDFMGSLSFGISE-LQKAGVDGWFKLLSQEEG 127
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.3 bits (200), Expect = 3e-19
Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 4/108 (3%)
Query: 256 LHVKVVKAMNLKK---KDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTV 312
V V++A + K D+L DPYV+L I+ K+T + ++NP WNE + F +
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64
Query: 313 RDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLK 360
+ +E+ + D + +G + + E +
Sbjct: 65 DPNQENVLEITLMDAN-YVMDETLGTATFTVSSMKVGEKKEVPFIFNQ 111
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.1 bits (106), Expect = 2e-06
Identities = 16/127 (12%), Positives = 38/127 (29%), Gaps = 13/127 (10%)
Query: 414 LVVIVHEAQDVEGKHH------TNPYARILFRGEERKTKHVKKNRDPR--WEEEFQFMLE 465
V+V A V +PY + K + + E +
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64
Query: 466 EPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQI 525
+P + L + + + ETLG +S + ++ + +++
Sbjct: 65 DPNQENVLEITLMDANYV-----MDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEM 119
Query: 526 ELQWRTA 532
L+ ++
Sbjct: 120 SLEVASS 126
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 79.4 bits (195), Expect = 2e-18
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNE 306
Y+ L V V+KA +L K D+ G SDPYVK+ + ++ KKT VK N +NE
Sbjct: 10 YQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNE 69
Query: 307 EYNFTVRDPESQA--VELAVYDWEQVGKHDKMGMNVVPLKELTPEE 350
+ F + + VE V D E+ +++ +G V+
Sbjct: 70 LFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGG 115
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 45.5 bits (107), Expect = 2e-06
Identities = 20/129 (15%), Positives = 41/129 (31%), Gaps = 18/129 (13%)
Query: 412 GLLVVIVHEAQD---VEGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQFM 463
L V+V +A+ + ++PY ++ R ++KT K + + E F F
Sbjct: 15 NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD 74
Query: 464 L-EEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGR 522
+ E + V E +G + + + + D +
Sbjct: 75 IPCESLEEISVEFLVLDSER----GSRNEVIGRLVLGATAE--GSGGGHWKEICDFPRRQ 128
Query: 523 IQIELQWRT 531
I +W
Sbjct: 129 IA---KWHM 134
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 78.6 bits (193), Expect = 3e-18
Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 6/112 (5%)
Query: 251 RPVGILHVKVVKAMNLKK--KDLLGASDPYVKLK---ITEDKLPSKKTTVKHKNLNPEWN 305
RP L V+++ L K K+ DP V ++ + D + + + NP W+
Sbjct: 2 RPE-RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWD 60
Query: 306 EEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLD 357
E+ F V P+ V V D++ K+D +G + +P L V L
Sbjct: 61 MEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRHVHLLS 112
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.6 bits (193), Expect = 4e-18
Identities = 20/109 (18%), Positives = 50/109 (45%), Gaps = 7/109 (6%)
Query: 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSK--KTTVKHKNLNPEWNE 306
+ + L V ++ A +L ++ +PYVK+ D+ +T K L P+WN+
Sbjct: 9 FDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQ 68
Query: 307 EYNFTVRDP---ESQAVELAVYDWEQVGKH--DKMGMNVVPLKELTPEE 350
+ ++ + +E+ ++D +V + + +G ++ L+ ++
Sbjct: 69 TFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD 117
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.0 bits (111), Expect = 3e-07
Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 8/106 (7%)
Query: 411 GGLLVVIVHEAQD---VEGKHHTNPYARILF-----RGEERKTKHVKKNRDPRWEEEFQF 462
G L+V + A+D E NPY +I F +R+TK VKK +P+W + F +
Sbjct: 13 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY 72
Query: 463 MLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKR 508
+E+ E LG I I L + +
Sbjct: 73 SPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE 118
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 78.7 bits (193), Expect = 7e-18
Identities = 40/105 (38%), Positives = 62/105 (59%), Gaps = 4/105 (3%)
Query: 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNE 306
Y G L V +++A NLKK D+ G SDPYVK+ + ++ +L KKTT+K LNP +NE
Sbjct: 20 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNE 79
Query: 307 EYNFTVRDPESQAVELAV--YDWEQVGKHDKMGMNVVPLKELTPE 349
++F V + Q V++ V D++++GK+D +G V E
Sbjct: 80 SFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAE 124
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.7 bits (97), Expect = 4e-05
Identities = 23/129 (17%), Positives = 49/129 (37%), Gaps = 18/129 (13%)
Query: 412 GLLVVIVHEAQDVEGKHHT---NPYARILF-----RGEERKTKHVKKNRDPRWEEEFQFM 463
G L V++ EA++++ +PY +I R +++KT K +P + E F F
Sbjct: 25 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84
Query: 464 LEEPPTN-DRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGR 522
+ ++ V V + + +G + + + + ++ +
Sbjct: 85 VPFEQIQKVQVVVTVLDYDK----IGKNDAIGKVFVGYNST--GAELRHWSDMLANPRRP 138
Query: 523 IQIELQWRT 531
I QW T
Sbjct: 139 IA---QWHT 144
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 77.5 bits (190), Expect = 8e-18
Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 11/132 (8%)
Query: 251 RPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNF 310
+ VGIL VKV+KA +L D G SDP+ L++ D+L + +KNLNPEWN+ + F
Sbjct: 3 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHT---VYKNLNPEWNKVFTF 59
Query: 311 TVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNE 370
++D +E+ V+D + D +G +PL + +P+ L +
Sbjct: 60 PIKDIH-DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDL-------EQ 111
Query: 371 KSRGQLVVEFIY 382
+G + +E
Sbjct: 112 AFKGVIYLEMDL 123
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.9 bits (95), Expect = 5e-05
Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 12/123 (9%)
Query: 412 GLLVVIVHEAQDVEGKHHT---NPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPP 468
G+L V V +A D+ + +P+ + + +T V KN +P W + F F +++
Sbjct: 6 GILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIH 65
Query: 469 TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKR---INEKYHLIDSKNGRIQI 525
+ V P + LG + I L + + + + L + G I +
Sbjct: 66 DVLEVTVFDE------DGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYL 119
Query: 526 ELQ 528
E+
Sbjct: 120 EMD 122
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 77.8 bits (191), Expect = 8e-18
Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 5/118 (4%)
Query: 249 YRRPVGILHVKVVKAMNLKKKDLLG-ASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEE 307
Y V + +A L D SDPY+K+ I +K KT V K L+P ++E
Sbjct: 17 YNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDET 76
Query: 308 YNFTVRDPE---SQAVELAVYDWEQVGKHDKMGMNVVPLKELTP-EEPSVKTLDLLKN 361
+ F A+ + +++ + D +G ++PL + E + +++
Sbjct: 77 FTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISG 134
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.7 bits (92), Expect = 2e-04
Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 14/118 (11%)
Query: 412 GLLVVIVHEAQDV----EGKHHTNPYARILFRGEERK---TKHVKKNRDPRWEEEFQFML 464
VV + EA+ + E ++PY ++ E++ T+ ++K DP ++E F F
Sbjct: 22 KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYG 81
Query: 465 EEPP--TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDV-VSNKRINEKYHLIDSK 519
LH + S + +G + I LS + +S ++ +I
Sbjct: 82 IPYTQIQELALHFTILSFDR----FSRDDIIGEVLIPLSGIELSEGKMLMNREIISGP 135
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 76.1 bits (186), Expect = 4e-17
Identities = 27/121 (22%), Positives = 57/121 (47%), Gaps = 14/121 (11%)
Query: 254 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPS-----------KKTTVKHKNLNP 302
G L + +++A NL +D G SDP+VK+ + + ++T K+LNP
Sbjct: 18 GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77
Query: 303 EWNEEYNFTV---RDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 359
EWN+ + + +E+ V+D+++ +D +G ++ L + + + + L
Sbjct: 78 EWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLK 137
Query: 360 K 360
+
Sbjct: 138 E 138
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 43.7 bits (102), Expect = 8e-06
Identities = 22/123 (17%), Positives = 47/123 (38%), Gaps = 23/123 (18%)
Query: 412 GLLVVIVHEAQDVEGKH---HTNPYARILFRGEE--------------RKTKHVKKNRDP 454
G L++ + +A+++ + +++P+ ++ R+TK+V+K+ +P
Sbjct: 18 GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77
Query: 455 RWEEEFQF--MLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEK 512
W + + + E L V V + LG + I+LS
Sbjct: 78 EWNQTVIYKSISMEQLMKKTLEVTVW----DYDRFSSNDFLGEVLIDLSSTSHLDNTPRW 133
Query: 513 YHL 515
Y L
Sbjct: 134 YPL 136
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 74.1 bits (181), Expect = 2e-16
Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKK--TTVKHKNLNPEWNE 306
Y G L V +++ ++L D G SDP+VKL + D K T +K K LNPE+NE
Sbjct: 10 YSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNE 69
Query: 307 EYNFTVRDPESQAVEL--AVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKN 361
E+ + ++ + L +V+D++ +D +G + + + LKN
Sbjct: 70 EFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLK--HWYECLKN 124
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 44.4 bits (104), Expect = 3e-06
Identities = 20/128 (15%), Positives = 52/128 (40%), Gaps = 16/128 (12%)
Query: 412 GLLVVIVHEAQD---VEGKHHTNPYARILFRG-----EERKTKHVKKNRDPRWEEEFQFM 463
G L+V + ++ +++P+ ++ + + KT+ KK +P + EEF +
Sbjct: 15 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 74
Query: 464 LEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRI 523
+ +D + + + +G + +S +R+ Y + +K+ +I
Sbjct: 75 I---KHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK--GERLKHWYECLKNKDKKI 129
Query: 524 QIELQWRT 531
+ +W
Sbjct: 130 E---RWHQ 134
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 73.5 bits (179), Expect = 2e-16
Identities = 38/116 (32%), Positives = 64/116 (55%), Gaps = 4/116 (3%)
Query: 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEY 308
Y L V++++A++L KD G SDPYVK+ + D+ +T V K LNP +NE +
Sbjct: 13 YLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETF 72
Query: 309 NFTVRDPE--SQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTL--DLLK 360
F+V E + + +VYD+++ +HD +G V+ E+P + L D+L+
Sbjct: 73 QFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE 128
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 72.9 bits (178), Expect = 6e-16
Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKK--TTVKHKNLNPEWNE 306
Y G+L V ++KA NLK DL G SDPYVK + + KK T++K LNP +NE
Sbjct: 15 YLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNE 74
Query: 307 EYNFTVRDPESQAVELAV--YDWEQVGKHDKMGMNVVPLKELTPEE 350
F V + V L++ D++ +G ++ +G+ V + P
Sbjct: 75 ALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHG 120
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.7 bits (175), Expect = 1e-15
Identities = 21/128 (16%), Positives = 49/128 (38%), Gaps = 7/128 (5%)
Query: 254 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVR 313
L + V+ A + K PYV++ + KKT + +P+W + V
Sbjct: 6 SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQS---KKTEKCNNTNSPKWKQPLTVIVT 62
Query: 314 DPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDL-NDGQNEKS 372
+ V+ + + +G + + E + ++K +++ + L D + ++
Sbjct: 63 PV--SKLHFRVWSHQTLKSDVLLGTAALDIYET-LKSNNMKLEEVVVTLQLGGDKEPTET 119
Query: 373 RGQLVVEF 380
G L +
Sbjct: 120 IGDLSICL 127
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (90), Expect = 3e-04
Identities = 23/131 (17%), Positives = 45/131 (34%), Gaps = 20/131 (15%)
Query: 412 GLLVVIVHEAQDVEGKH---HTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPP 468
L + V A+ E K +PY + G+ +KT+ P+W++ ++
Sbjct: 6 SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTPVS 65
Query: 469 TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSN-----KRINEKYHLIDSKN--- 520
H V S + L LG +++ + + + + + L K
Sbjct: 66 KL---HFRVWSHQT----LKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTE 118
Query: 521 --GRIQIELQW 529
G + I L
Sbjct: 119 TIGDLSICLDG 129
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.5 bits (161), Expect = 7e-14
Identities = 21/125 (16%), Positives = 44/125 (35%), Gaps = 6/125 (4%)
Query: 239 EVPILDPSKAYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK-LPSKKTTVKH 297
+ P L Y L V ++A+ + G D YV+ + +T +K
Sbjct: 11 QAPKLHYCLDYDCQKAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKK 67
Query: 298 KNLNPEWNEEYNFTVRDPESQA--VELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKT 355
+ L+ W E + + E + L + ++ +H G + L + + +
Sbjct: 68 RQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQW 127
Query: 356 LDLLK 360
+L
Sbjct: 128 GELKT 132
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.6 bits (112), Expect = 3e-07
Identities = 17/112 (15%), Positives = 24/112 (21%), Gaps = 7/112 (6%)
Query: 412 GLLVVIVHEAQDVEGKHHTNPYARILFRGEE----RKTKHVKKNRDPRWEEEFQFMLEEP 467
L V EA + Y + +T K+ WEE L E
Sbjct: 26 AELFVTRLEAVTSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEE 85
Query: 468 PTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK 519
R G + + L + L S
Sbjct: 86 ELPTATLTLTLRTCDRFSRHSV---AGELRLGLDGTSVPLGAAQWGELKTSG 134
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 65.7 bits (159), Expect = 1e-13
Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 15/114 (13%)
Query: 254 GILHVKVVKAMNLKKKDLL-----------GASDPYVKLKITEDKLPSKKTTVKHKNLNP 302
G+L +K+ +A++LK DPY+ L + D +T K K +P
Sbjct: 6 GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV--DDSRIGQTATKQKTNSP 63
Query: 303 EWNEEYNFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTL 356
W++E+ V + ELAV+ +G D + + +EL
Sbjct: 64 AWHDEFVTDVCNGRKI--ELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFED 115
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 36.4 bits (83), Expect = 0.002
Identities = 20/138 (14%), Positives = 41/138 (29%), Gaps = 24/138 (17%)
Query: 412 GLLVVIVHEAQDV--------------EGKHHTNPYARILFRG-EERKTKHVKKNRDPRW 456
GLL + + EA + +PY + +T +K P W
Sbjct: 6 GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAW 65
Query: 457 EEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSN--KRINEKYH 514
+EF + L V + + + + I +++ N + +
Sbjct: 66 HDEFVTDV-CNGRKIELAVFHDA------PIGYDDFVANCTIQFEELLQNGSRHFEDWID 118
Query: 515 LIDSKNGRIQIELQWRTA 532
L + I+L +
Sbjct: 119 LEPEGKVYVIIDLSGSSG 136
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 62.1 bits (150), Expect = 2e-12
Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 11/117 (9%)
Query: 254 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVR 313
+L V V KA ++ + YV LK+ K TT+ + P W +++ F +
Sbjct: 2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQN----VKSTTIAVRGSQPSWEQDFMFEIN 54
Query: 314 DPESQAVELAVYDWEQVGKHDKMGMNVVPLKEL--TPEEPSVKTLDLLKNMDLNDGQ 368
+ + V++ + +G +PL+ + + EE + L L + D +
Sbjct: 55 RLDLGLT-VEVWNKGLI-WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSE 109
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.7 bits (118), Expect = 4e-08
Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 9/118 (7%)
Query: 412 GLLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTND 471
LL V V +A+ + N Y L + T + P WE++F F + +
Sbjct: 2 SLLCVGVKKAKFDGAQEKFNTYV-TLKVQNVKSTTIAVRGSQPSWEQDFMFEINRL--DL 58
Query: 472 RLHVEVCSVSSRIGLLHPKETLGYIDINLSDVV-SNKRINEKYHLIDSKNGRIQIELQ 528
L VEV + +G + I L + SN+ ++ +DS+ E+
Sbjct: 59 GLTVEVWNKGL-----IWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEIC 111
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.0 bits (145), Expect = 1e-11
Identities = 18/110 (16%), Positives = 41/110 (37%), Gaps = 15/110 (13%)
Query: 256 LHVKVVKAMNLKKKDLLGASDPYVKLKI-----TEDKLPSKKTTVKHKNLNPEWNEE--Y 308
L + V+ L ++ YV++++ + K + ++NP W EE
Sbjct: 3 LSITVISGQFLSERS----VRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFV 58
Query: 309 NFTVRDPESQAVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 358
+ PE ++ +AV + + +G ++P+ L +
Sbjct: 59 FEKILMPELASLRVAVMEEG----NKFLGHRIIPINALNSGYHHLCLHSE 104
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 56.7 bits (136), Expect = 2e-10
Identities = 15/99 (15%), Positives = 37/99 (37%), Gaps = 5/99 (5%)
Query: 269 KDLLGASDPYVKLKITEDKLP--SKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYD 326
+ AS P+ +K+ E K K + PEW ++ + + +++ +
Sbjct: 18 QAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEGRV--IQIVLMR 75
Query: 327 WEQVGKHD-KMGMNVVPLKELTPEEPSVKTLDLLKNMDL 364
+ + +G++V+ + + LDL +
Sbjct: 76 AAEDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQPQAKV 114
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.7 bits (84), Expect = 0.001
Identities = 11/123 (8%), Positives = 34/123 (27%), Gaps = 15/123 (12%)
Query: 412 GLLVVIVHEAQDVEGKHHTNPYARILFRGEE-----RKTKHVKKNRDPRWEEEFQFMLEE 466
+ Q + + P+ + + + K P W+ F +
Sbjct: 8 SFNSYELGSLQAEDD--ASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHI-- 63
Query: 467 PPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIE 526
+ + + + + T+G + +N + L ++ +
Sbjct: 64 -YEGRVIQIVLMRAAEDPM---SEVTVGVSVLAERCKKNNGKAEFWLDL--QPQAKVLMC 117
Query: 527 LQW 529
+Q+
Sbjct: 118 VQY 120
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 532 | |||
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.87 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.86 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.84 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.83 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.8 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.8 | |
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.8 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.79 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.79 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.78 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.77 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.77 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.76 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.76 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.75 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.74 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.73 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.72 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.71 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.71 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.71 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.71 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.71 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.7 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.7 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.7 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.69 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.69 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.67 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.65 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.65 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.64 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.64 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.63 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.62 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.61 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.6 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.53 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.34 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.24 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 95.81 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 90.48 |
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=1.1e-22 Score=172.84 Aligned_cols=122 Identities=32% Similarity=0.539 Sum_probs=104.1
Q ss_pred CCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCC
Q 009539 251 RPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQV 330 (532)
Q Consensus 251 ~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~ 330 (532)
++.|+|+|+|++|++|+.++..|++||||+++++++. ++|+++++|.||+|||+|.|.+.++ .+.|.|+|||++..
T Consensus 3 ~~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~---~~T~~~~~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~ 78 (126)
T d2ep6a1 3 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDR---LQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDEDGD 78 (126)
T ss_dssp CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEE---EECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEEETT
T ss_pred CccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeE---EEEEeeCCceeEEEEEEEEEEEecc-CceeEEEEEEccCC
Confidence 4689999999999999999999999999999998754 5899999999999999999999875 57899999999999
Q ss_pred CCCCeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEE
Q 009539 331 GKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 383 (532)
Q Consensus 331 ~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~ 383 (532)
++|++||++.++++++..+..+++++... ......+|+|+++++|.
T Consensus 79 ~~d~~lG~~~i~l~~l~~~~~~~~~l~~~-------~~~~~~~G~i~l~~~~i 124 (126)
T d2ep6a1 79 KPPDFLGKVAIPLLSIRDGQPNCYVLKNK-------DLEQAFKGVIYLEMDLI 124 (126)
T ss_dssp EEEEECCBCEEEGGGCCSSCCEECCCBCS-------CTTSCCSSEEEEEEEEE
T ss_pred cCcceEEEEEEEHHHCCCCCceEEEcccc-------CCCCceeEEEEEEEEEE
Confidence 99999999999999998776554333221 11355679999999875
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.86 E-value=6.2e-22 Score=170.50 Aligned_cols=127 Identities=28% Similarity=0.521 Sum_probs=106.6
Q ss_pred cCCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeC-CCCCceeecEEEEEeeCCCCCEEEEEEEE
Q 009539 248 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKH-KNLNPEWNEEYNFTVRDPESQAVELAVYD 326 (532)
Q Consensus 248 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~~~~~L~v~v~d 326 (532)
....|.|+|+|+|++|++|+..+..|++||||+++++++. .+|++++ ++.||+|||+|.|.+.+. ...|.|+|||
T Consensus 4 ~~~~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~---~~t~~~~~~~~nP~Wne~f~f~v~~~-~~~L~v~V~d 79 (136)
T d1wfja_ 4 GSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQD---QKSNVAEGMGTTPEWNETFIFTVSEG-TTELKAKIFD 79 (136)
T ss_dssp CCCCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCE---EECCCCTTCCSSCEEEEEEEEEEESS-CCEEEEEECC
T ss_pred CCCCCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeee---EEEEEEecCCCcEEEeeEEEEEEcCc-cceEEEEEEE
Confidence 4566899999999999999999999999999999998755 3677765 689999999999999875 4679999999
Q ss_pred ccCCCCCCeeEEEEEeCccCCCC-CCeEEEEecccccccCCCCCCccccEEEEEEEEEEcc
Q 009539 327 WEQVGKHDKMGMNVVPLKELTPE-EPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPFK 386 (532)
Q Consensus 327 ~d~~~~d~~iG~~~i~l~~l~~~-~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~ 386 (532)
+|..++|++||++.++|.++... .....|+.+.+ +++.+|+|+++++|.|..
T Consensus 80 ~d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~--------~~~~~G~i~l~l~~~p~~ 132 (136)
T d1wfja_ 80 KDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK--------DEEYKGEIWVALSFKPSG 132 (136)
T ss_dssp SSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEEE--------TTEEEEEEEEEEEEEECC
T ss_pred ecCCCCCCEEEEEEEEhHHhcccCCcCcEEEEecC--------CCccCEEEEEEEEEEeCC
Confidence 99999999999999999998543 33445666543 356789999999999853
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=5.9e-21 Score=162.02 Aligned_cols=121 Identities=21% Similarity=0.362 Sum_probs=105.2
Q ss_pred eEEEEEEEEEcCCCCcC---CCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccC
Q 009539 253 VGILHVKVVKAMNLKKK---DLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQ 329 (532)
Q Consensus 253 ~g~L~V~v~~A~~L~~~---d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~ 329 (532)
.+.|+|+|++|+||+.. |..|.+||||++++++.....++|+++.++.||.|||+|.|.+.+.....|.|+|||++.
T Consensus 2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~ 81 (126)
T d1rlwa_ 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCC
Confidence 46899999999999874 445889999999998766566799999999999999999999988777899999999986
Q ss_pred CCCCCeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEEE
Q 009539 330 VGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 384 (532)
Q Consensus 330 ~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p 384 (532)
. +|++||++.++|+++..+.....|++|. ....|++++++++.|
T Consensus 82 ~-~d~~lG~~~i~L~~l~~~~~~~~~~~L~----------~~~~g~i~~~l~~~~ 125 (126)
T d1rlwa_ 82 V-MDETLGTATFTVSSMKVGEKKEVPFIFN----------QVTEMVLEMSLEVAS 125 (126)
T ss_dssp S-CCEEEEEEEEEGGGSCTTCEEEEEEEET----------TTEEEEEEEEEECCC
T ss_pred C-CCCeEEEEEEEHHHccCCCeEEEEEEcc----------CCCeEEEEEEEEEEe
Confidence 4 6899999999999999888888999882 456799999988764
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=2.9e-20 Score=157.65 Aligned_cols=116 Identities=18% Similarity=0.395 Sum_probs=103.2
Q ss_pred ceEEEEEEeeeecCCCC------CCCCCEEEEEEcC---eeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEcc
Q 009539 411 GGLLVVIVHEAQDVEGK------HHTNPYARILFRG---EERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVS 481 (532)
Q Consensus 411 ~g~L~v~i~~a~~L~~~------~~~dpyv~v~~~~---~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~ 481 (532)
++.|+|+|++|+||+.. +.+||||++++++ ++++|++++++.||.|||.|+|.+.+. ....|.|+|||++
T Consensus 2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~-~~~~L~v~V~d~d 80 (126)
T d1rlwa_ 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPN-QENVLEITLMDAN 80 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTT-SCCEEEEEEEECC
T ss_pred CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCc-ccCcEEEEEEECC
Confidence 67899999999999863 5799999999976 457999999999999999999999865 4568999999987
Q ss_pred ccccCCCCCceeEEEEEechhhhccceeceEEEeCCCCCeEEEEEEEEEeC
Q 009539 482 SRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRIQIELQWRTA 532 (532)
Q Consensus 482 ~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~w~p~ 532 (532)
. .+|++||++.++|+++..++....||+|...++|+|++++++.||
T Consensus 81 ~-----~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~g~i~~~l~~~~s 126 (126)
T d1rlwa_ 81 Y-----VMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEVASS 126 (126)
T ss_dssp S-----SCCEEEEEEEEEGGGSCTTCEEEEEEEETTTEEEEEEEEEECCCC
T ss_pred C-----CCCCeEEEEEEEHHHccCCCeEEEEEEccCCCeEEEEEEEEEEeC
Confidence 4 468999999999999988888889999998889999999999886
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.80 E-value=1.8e-19 Score=154.86 Aligned_cols=118 Identities=20% Similarity=0.430 Sum_probs=101.8
Q ss_pred CCceEEEEEEeeeecCCCC---CCCCCEEEEEEcCeeEEEeeec-CCCCCcccceEEEEecCCCCCCeEEEEEEEccccc
Q 009539 409 AGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVK-KNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRI 484 (532)
Q Consensus 409 ~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~~~~kT~vv~-~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~ 484 (532)
...|.|.|+|++|++|+.. +.+||||+++++++.++|++++ ++.||.|||.|+|.+.+. ...|+|+|||++.
T Consensus 7 ~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~--~~~L~v~V~d~d~-- 82 (136)
T d1wfja_ 7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG--TTELKAKIFDKDV-- 82 (136)
T ss_dssp CCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESS--CCEEEEEECCSSS--
T ss_pred CCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCc--cceEEEEEEEecC--
Confidence 3579999999999999864 6899999999999999999987 588999999999999864 3579999999986
Q ss_pred cCCCCCceeEEEEEechhhhcc-ceeceEEEeCCCC--CeEEEEEEEEEeC
Q 009539 485 GLLHPKETLGYIDINLSDVVSN-KRINEKYHLIDSK--NGRIQIELQWRTA 532 (532)
Q Consensus 485 ~~~~~d~~lG~~~i~L~~l~~~-~~~~~~~~L~~~~--~G~i~l~~~w~p~ 532 (532)
++.|++||++.|+|.++... ....+||++...+ .|+|+++++|+|+
T Consensus 83 --~~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~~~~~~G~i~l~l~~~p~ 131 (136)
T d1wfja_ 83 --GTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKPS 131 (136)
T ss_dssp --CTTTCCSEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEEC
T ss_pred --CCCCCEEEEEEEEhHHhcccCCcCcEEEEecCCCccCEEEEEEEEEEeC
Confidence 57899999999999998764 3457899986443 5999999999995
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.80 E-value=2e-19 Score=154.35 Aligned_cols=118 Identities=25% Similarity=0.413 Sum_probs=100.6
Q ss_pred CeEEEEEEEEEcCCCCcCC-----------CCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEE
Q 009539 252 PVGILHVKVVKAMNLKKKD-----------LLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAV 320 (532)
Q Consensus 252 ~~g~L~V~v~~A~~L~~~d-----------~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L 320 (532)
-.|.|+|+|++|++|++.+ ..+.+||||++++++... .+|++++++.||.|||+|.|.+.+ .+.|
T Consensus 4 ~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~--~~T~~~~~t~~P~Wne~f~f~v~~--~~~l 79 (136)
T d1gmia_ 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRI--GQTATKQKTNSPAWHDEFVTDVCN--GRKI 79 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEE--EECCCCSSCSSCEEEEEEEEEEEE--ECEE
T ss_pred EEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcC--cEeeEEcCCCCccCccEEEEEEec--CCce
Confidence 4699999999999998753 346789999999986543 589999999999999999999975 3789
Q ss_pred EEEEEEccCCCCCCeeEEEEEeCccCCCCC--CeEEEEecccccccCCCCCCccccEEEEEEEEEEc
Q 009539 321 ELAVYDWEQVGKHDKMGMNVVPLKELTPEE--PSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKPF 385 (532)
Q Consensus 321 ~v~v~d~d~~~~d~~iG~~~i~l~~l~~~~--~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 385 (532)
+|+|||++..++|++||++.++|+++..+. ....|++| .+.|++++.+.+.|.
T Consensus 80 ~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L------------~p~G~v~l~v~~~~~ 134 (136)
T d1gmia_ 80 ELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDL------------EPEGKVYVIIDLSGS 134 (136)
T ss_dssp EEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEEC------------BSSCEEEEEEEEEEE
T ss_pred EEEEEEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeC------------CCCcEEEEEEEEEeC
Confidence 999999999999999999999999997654 35578876 247999999999874
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=1.3e-19 Score=153.63 Aligned_cols=113 Identities=26% Similarity=0.421 Sum_probs=98.0
Q ss_pred CceEEEEEEeeeecCCCC---CCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccC
Q 009539 410 GGGLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGL 486 (532)
Q Consensus 410 ~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~ 486 (532)
+.|+|+|+|++|+||+.. +.+||||++++++++++|++++++.||.|||.|+|.+.++ .+.|.++|||++.
T Consensus 4 ~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~--~~~L~i~V~d~~~---- 77 (126)
T d2ep6a1 4 DVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDI--HDVLEVTVFDEDG---- 77 (126)
T ss_dssp CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCT--TCEEEEEEEEEET----
T ss_pred ccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEecc--CceeEEEEEEccC----
Confidence 579999999999999863 6899999999999999999999999999999999999874 4689999999875
Q ss_pred CCCCceeEEEEEechhhhccceeceEEEeCCC-----CCeEEEEEEEEE
Q 009539 487 LHPKETLGYIDINLSDVVSNKRINEKYHLIDS-----KNGRIQIELQWR 530 (532)
Q Consensus 487 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~-----~~G~i~l~~~w~ 530 (532)
++.|++||++.++|+++..+. .+||.|... .+|+|++++++-
T Consensus 78 ~~~d~~lG~~~i~l~~l~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~i 124 (126)
T d2ep6a1 78 DKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQAFKGVIYLEMDLI 124 (126)
T ss_dssp TEEEEECCBCEEEGGGCCSSC--CEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred CcCcceEEEEEEEHHHCCCCC--ceEEEccccCCCCceeEEEEEEEEEE
Confidence 567899999999999986644 578887532 369999998874
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.79 E-value=1.2e-19 Score=155.03 Aligned_cols=118 Identities=23% Similarity=0.510 Sum_probs=98.9
Q ss_pred cccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEE-----cCeeE
Q 009539 372 SRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILF-----RGEER 443 (532)
Q Consensus 372 ~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~-----~~~~~ 443 (532)
.+|+|++++.|. .+.|.|+|++|+||+.. +.+||||++++ +..++
T Consensus 2 ~rG~i~l~~~~~---------------------------~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~ 54 (132)
T d1a25a_ 2 RRGRIYIQAHID---------------------------REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQ 54 (132)
T ss_dssp TTCEEEEEEEES---------------------------SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCE
T ss_pred cccEEEEEEEec---------------------------CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCcccc
Confidence 579999998773 57899999999999863 57899999998 34567
Q ss_pred EEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCCCe
Q 009539 444 KTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNG 521 (532)
Q Consensus 444 kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G 521 (532)
+|+++++|.||+|||.|.|.+........|.|+|||++. ++.|++||++.++|+++... ..++||+|.+...|
T Consensus 55 kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~----~~~d~~iG~~~i~l~~l~~~-~~~~W~~L~~~~~g 127 (132)
T d1a25a_ 55 KTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL----TSRNDFMGSLSFGISELQKA-GVDGWFKLLSQEEG 127 (132)
T ss_dssp ECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS----SSCCEEEEEEEEEHHHHTTC-CEEEEEECBCHHHH
T ss_pred EEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecCC----CCCCcEeEEEEEeHHHcCCC-CCCeEEECCCCCCC
Confidence 999999999999999999999765344579999999975 67899999999999998654 46899999764444
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.79 E-value=4.6e-19 Score=151.98 Aligned_cols=114 Identities=16% Similarity=0.306 Sum_probs=99.4
Q ss_pred CceEEEEEEeeeecCCC--------------CCCCCCEEEEEEcCee-EEEeeecCCCCCcccceEEEEecCCCCCCeEE
Q 009539 410 GGGLLVVIVHEAQDVEG--------------KHHTNPYARILFRGEE-RKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLH 474 (532)
Q Consensus 410 ~~g~L~v~i~~a~~L~~--------------~~~~dpyv~v~~~~~~-~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~ 474 (532)
-+|.|+|+|++|++|+. .+.+||||+++++++. .+|++++++.||.|||.|.|.+.+. +.|.
T Consensus 4 ~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~~---~~l~ 80 (136)
T d1gmia_ 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG---RKIE 80 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE---CEEE
T ss_pred EEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEecC---CceE
Confidence 47999999999999974 2468999999999876 4899999999999999999999753 6899
Q ss_pred EEEEEccccccCCCCCceeEEEEEechhhhccc--eeceEEEeCCCCCeEEEEEEEEEeC
Q 009539 475 VEVCSVSSRIGLLHPKETLGYIDINLSDVVSNK--RINEKYHLIDSKNGRIQIELQWRTA 532 (532)
Q Consensus 475 v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~--~~~~~~~L~~~~~G~i~l~~~w~p~ 532 (532)
|+|||++. +++|++||++.++|+++..+. ..+.||+|. ++|+|+++++++|+
T Consensus 81 i~V~d~~~----~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~--p~G~v~l~v~~~~~ 134 (136)
T d1gmia_ 81 LAVFHDAP----IGYDDFVANCTIQFEELLQNGSRHFEDWIDLE--PEGKVYVIIDLSGS 134 (136)
T ss_dssp EEEEECCS----SSSCEEEEEEEEEHHHHTSTTCSEEEEEEECB--SSCEEEEEEEEEEE
T ss_pred EEEEEecC----CCCceeEEEEEEEHHHhhhcCCcceeEEEeCC--CCcEEEEEEEEEeC
Confidence 99999975 678999999999999998754 467899997 58999999999874
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.78 E-value=4.9e-19 Score=153.39 Aligned_cols=120 Identities=18% Similarity=0.312 Sum_probs=100.8
Q ss_pred CCccccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEE---cCee
Q 009539 369 NEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILF---RGEE 442 (532)
Q Consensus 369 ~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~---~~~~ 442 (532)
.....|+|++++.|.+. .+.|.|+|++|+||+.. +.+||||++++ +.+.
T Consensus 16 ~~~~~G~l~~sl~y~~~-------------------------~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~ 70 (143)
T d1rsya_ 16 EEEKLGKLQYSLDYDFQ-------------------------NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKK 70 (143)
T ss_dssp --CCCCEEEEEEEEETT-------------------------TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSC
T ss_pred chhcceEEEEEEEEeCC-------------------------CCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCee
Confidence 45678999999999753 67999999999999863 57899999998 4456
Q ss_pred EEEeeecCCCCCcccceEEEEecCCC-CCCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCC
Q 009539 443 RKTKHVKKNRDPRWEEEFQFMLEEPP-TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLID 517 (532)
Q Consensus 443 ~kT~vv~~t~nP~w~e~f~f~v~~~~-~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~ 517 (532)
.+|++++++.||.|||.|.|.+.... ....|.|+|||++. ++++++||++.++|+++..++...+||+|+.
T Consensus 71 ~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d~----~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~s 142 (143)
T d1rsya_ 71 FETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR----FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142 (143)
T ss_dssp EECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS----SSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred EEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEEcCC----CCCCcEEEEEEEEchhccCCCCCccEEeCCC
Confidence 79999999999999999999886432 23579999999975 5788999999999999987777789999974
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=2.6e-19 Score=152.88 Aligned_cols=122 Identities=20% Similarity=0.271 Sum_probs=98.4
Q ss_pred eEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCC
Q 009539 253 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGK 332 (532)
Q Consensus 253 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~ 332 (532)
.+.|.|+|++|+++++.+..+++||||++.++++. ++|++++++.||.|||.|.|.+.. .+.|+|+|||++.+++
T Consensus 5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~---~kT~v~~~t~nP~wne~f~f~~~~--~~~l~~~V~d~d~~~~ 79 (133)
T d2nq3a1 5 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQS---KKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKS 79 (133)
T ss_dssp CEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEE---EECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSSSC
T ss_pred ceEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeE---EeeEEEEecccEEEcceEEEEEEe--cceeEEEEEEccCCCC
Confidence 47899999999999998888899999999998765 589999999999999999999965 4789999999999999
Q ss_pred CCeeEEEEEeCccCCCC-----CCeEEEEecccccccCCCCCCccccEEEEEEEEEE
Q 009539 333 HDKMGMNVVPLKELTPE-----EPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 384 (532)
Q Consensus 333 d~~iG~~~i~l~~l~~~-----~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p 384 (532)
|++||++.++|.++... .....++.+.. ..++....|+|.+.+.+..
T Consensus 80 d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~-----~~~~~~~~G~L~v~l~~~~ 131 (133)
T d2nq3a1 80 DVLLGTAALDIYETLKSNNMKLEEVVVTLQLGG-----DKEPTETIGDLSICLDGLQ 131 (133)
T ss_dssp CEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEE-----SSCTTSEEEEEEEEEESEE
T ss_pred CceEEEEEEEHHHhhhhcCCceeeEEEEEecCC-----CCCCceEEEEEEEEEeeEE
Confidence 99999999999987432 22344444422 1224567899999887764
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.77 E-value=8.7e-19 Score=151.78 Aligned_cols=110 Identities=34% Similarity=0.507 Sum_probs=97.6
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVYD 326 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d 326 (532)
++...+.|+|+|++|+||+.++..|.+||||++++.+.....++|++++++.||+|||+|.|.+... ....|.|+|||
T Consensus 29 y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d 108 (143)
T d1rsya_ 29 YDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYD 108 (143)
T ss_dssp EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEE
T ss_pred EeCCCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEE
Confidence 4456679999999999999999889999999999976655567999999999999999999987533 36789999999
Q ss_pred ccCCCCCCeeEEEEEeCccCCCCCCeEEEEec
Q 009539 327 WEQVGKHDKMGMNVVPLKELTPEEPSVKTLDL 358 (532)
Q Consensus 327 ~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l 358 (532)
++..+++++||++.++|+++..+.....|++|
T Consensus 109 ~d~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L 140 (143)
T d1rsya_ 109 FDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 140 (143)
T ss_dssp CCSSSCCEEEEEEEEEGGGCCCSSCEEEEEEC
T ss_pred cCCCCCCcEEEEEEEEchhccCCCCCccEEeC
Confidence 99999999999999999999988888899987
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.76 E-value=7.2e-19 Score=149.65 Aligned_cols=119 Identities=19% Similarity=0.297 Sum_probs=96.8
Q ss_pred ccccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEc---CeeEE
Q 009539 371 KSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR---GEERK 444 (532)
Q Consensus 371 ~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~---~~~~k 444 (532)
.+.|+|.++++|.|. .+.|.|+|++|+||+.. +.+||||++++. .++++
T Consensus 2 ~p~G~l~~sl~y~~~-------------------------~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~k 56 (130)
T d1dqva1 2 APCGRISFALRYLYG-------------------------SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQ 56 (130)
T ss_dssp CSSCEEEEEEECCSS-------------------------SCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEE
T ss_pred CCcEEEEEEEEEECC-------------------------CCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEe
Confidence 467999999999763 78999999999999863 578999999994 34679
Q ss_pred EeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEccccccCCCCCceeEEEEEechhhhcc--ceeceEEEeCCC
Q 009539 445 TKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSN--KRINEKYHLIDS 518 (532)
Q Consensus 445 T~vv~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~--~~~~~~~~L~~~ 518 (532)
|++++++.||+|||.|.|.+..... ...|.|+|||++. +++|++||++.|++...+.. .....||+|.++
T Consensus 57 T~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~~----~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~~ 129 (130)
T d1dqva1 57 TKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDR----FSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEG 129 (130)
T ss_dssp CCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCS----SSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCC
T ss_pred ceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEEEcCC----CCCCceEEEEEECchhhhhcCCCCCcEEEecccC
Confidence 9999999999999999999865422 3479999999975 67899999999986554432 234579999864
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.76 E-value=1.4e-18 Score=148.34 Aligned_cols=107 Identities=34% Similarity=0.547 Sum_probs=92.6
Q ss_pred eEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCC--cCCceeeEeeCCCCCceeecEEEEEeeCCC-CCEEEEEEEEccC
Q 009539 253 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDPE-SQAVELAVYDWEQ 329 (532)
Q Consensus 253 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~L~v~v~d~d~ 329 (532)
.+.|.|+|++|+||+.+|..|.+||||++++.+. ....++|+++++|.||+|||+|.|.+.... ...|.|+|||+|.
T Consensus 14 ~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~ 93 (132)
T d1a25a_ 14 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL 93 (132)
T ss_dssp SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecCC
Confidence 4789999999999999999999999999999543 234578999999999999999999987543 4589999999999
Q ss_pred CCCCCeeEEEEEeCccCCCCCCeEEEEeccc
Q 009539 330 VGKHDKMGMNVVPLKELTPEEPSVKTLDLLK 360 (532)
Q Consensus 330 ~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~ 360 (532)
.++|++||++.++++++..+ ....|++|..
T Consensus 94 ~~~d~~iG~~~i~l~~l~~~-~~~~W~~L~~ 123 (132)
T d1a25a_ 94 TSRNDFMGSLSFGISELQKA-GVDGWFKLLS 123 (132)
T ss_dssp SSCCEEEEEEEEEHHHHTTC-CEEEEEECBC
T ss_pred CCCCcEeEEEEEeHHHcCCC-CCCeEEECCC
Confidence 99999999999999998765 4577888854
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.75 E-value=1.5e-18 Score=147.64 Aligned_cols=112 Identities=30% Similarity=0.466 Sum_probs=92.7
Q ss_pred cCCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEEEEE
Q 009539 248 AYRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVY 325 (532)
Q Consensus 248 ~~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~ 325 (532)
.+....+.|.|+|++|+||+.++..|.+||||++++.+.....++|++++++.||+|||+|.|.+... ....|.|+||
T Consensus 12 ~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~ 91 (130)
T d1dqva1 12 RYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVY 91 (130)
T ss_dssp ECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEE
T ss_pred EEECCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEE
Confidence 35567789999999999999999999999999999976655568999999999999999999998643 3567999999
Q ss_pred EccCCCCCCeeEEEEEeCccC-CCC-CCeEEEEecc
Q 009539 326 DWEQVGKHDKMGMNVVPLKEL-TPE-EPSVKTLDLL 359 (532)
Q Consensus 326 d~d~~~~d~~iG~~~i~l~~l-~~~-~~~~~~l~l~ 359 (532)
|++.+++|++||++.+++... ... .....|++|.
T Consensus 92 d~~~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~ 127 (130)
T d1dqva1 92 DFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDIL 127 (130)
T ss_dssp ECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECB
T ss_pred EcCCCCCCceEEEEEECchhhhhcCCCCCcEEEecc
Confidence 999999999999999986533 222 2344677764
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=1.1e-17 Score=143.71 Aligned_cols=121 Identities=17% Similarity=0.118 Sum_probs=103.1
Q ss_pred CCccccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCCCCCCCEEEEEEcC----eeEE
Q 009539 369 NEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGKHHTNPYARILFRG----EERK 444 (532)
Q Consensus 369 ~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~~~~dpyv~v~~~~----~~~k 444 (532)
.....|+|++++.|.+. .+.|.|+|++|+||+..+.+||||++++.+ ..++
T Consensus 8 s~~~~~~l~~sl~y~~~-------------------------~~~L~V~v~~a~~L~~~g~~dpyVkv~l~~~~~~~~~k 62 (138)
T d1wfma_ 8 SWNQAPKLHYCLDYDCQ-------------------------KAELFVTRLEAVTSNHDGGCDCYVQGSVANRTGSVEAQ 62 (138)
T ss_dssp CCSSCCEEEEEEEEETT-------------------------TTEEEEEEEEEECCCCSSCCCEEEEEEEEETTEEEEEE
T ss_pred CCCcCCEEEEEEEECCC-------------------------CCEEEEEEEEcCCCCCCCCcCcEEEEEECCCCCcccee
Confidence 35677999999999853 679999999999999888999999999953 2358
Q ss_pred EeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCC
Q 009539 445 TKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDS 518 (532)
Q Consensus 445 T~vv~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 518 (532)
|++++++.||+|||.|.|.+..... ...|.|+|||++. ++.+++||++.|+|.++.......+||+|...
T Consensus 63 T~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~~~----~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~~ 133 (138)
T d1wfma_ 63 TALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDR----FSRHSVAGELRLGLDGTSVPLGAAQWGELKTS 133 (138)
T ss_dssp CCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCS----SCTTSCSEEEEEESSSSSSCTTCCEEEECCCC
T ss_pred eeEECCCCCceEeeeEEEEeeehhccceEEEEEEeeecc----cccceeeeEEEEEhHHccCCCCceEeEeCCCC
Confidence 9999999999999999999975432 3479999999985 67899999999999998766667899999765
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.73 E-value=1.9e-17 Score=140.80 Aligned_cols=122 Identities=25% Similarity=0.431 Sum_probs=91.1
Q ss_pred EEEEEEEEEcCCCCcC--CCCCCCCcEEEEEEeCCc--CCceeeEeeC-CCCCceeecEEEEEeeCCCCCEEEEEEEEcc
Q 009539 254 GILHVKVVKAMNLKKK--DLLGASDPYVKLKITEDK--LPSKKTTVKH-KNLNPEWNEEYNFTVRDPESQAVELAVYDWE 328 (532)
Q Consensus 254 g~L~V~v~~A~~L~~~--d~~g~~dpyv~v~~~~~~--~~~~~T~v~~-~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d 328 (532)
..|+|+|++|++|+.. +..|++||||++++.+.. ...++|++++ ++.||.|||+|.|.+..+....|.|+|||+|
T Consensus 4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d 83 (131)
T d1qasa2 4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD 83 (131)
T ss_dssp EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEec
Confidence 4799999999999754 456789999999996532 2346788765 5579999999999987776788999999999
Q ss_pred CCCCCCeeEEEEEeCccCCCCCCeEEEEecccccccCCCCCCccccEEEEEEEEE
Q 009539 329 QVGKHDKMGMNVVPLKELTPEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYK 383 (532)
Q Consensus 329 ~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~ 383 (532)
..++|++||++.++|+++..+ ..+++|.... ...-..++|.+++.+.
T Consensus 84 ~~~~d~~iG~~~i~l~~l~~g---~~~~~L~~~~-----g~~~~~~~L~v~i~~~ 130 (131)
T d1qasa2 84 SSSKNDFIGQSTIPWNSLKQG---YRHVHLLSKN-----GDQHPSATLFVKISIQ 130 (131)
T ss_dssp TTTCCEEEEEEEEEGGGBCCE---EEEEEEECTT-----SCEEEEEEEEEEEEEE
T ss_pred CCCCCcEEEEEEEEEeccCCC---CEEEECCCCC-----cCCCCCCEEEEEEEEE
Confidence 999999999999999999765 3456663210 0122456777777653
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.72 E-value=2.1e-17 Score=141.99 Aligned_cols=116 Identities=20% Similarity=0.308 Sum_probs=91.5
Q ss_pred ccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEc--C---eeEE
Q 009539 373 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR--G---EERK 444 (532)
Q Consensus 373 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~--~---~~~k 444 (532)
+|+|+++++|.|. .+.|.|+|++|+||+.. +.+||||++++. + .++|
T Consensus 1 rG~l~~sl~Y~~~-------------------------~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~k 55 (138)
T d1w15a_ 1 RGELLVSLCYQST-------------------------TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKK 55 (138)
T ss_dssp CCEEEEEEEEETT-------------------------TTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEE
T ss_pred CcEEEEEEEEcCC-------------------------CCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCcccc
Confidence 6999999999974 67999999999999863 578999999982 2 2358
Q ss_pred EeeecCCCCCcccceEEEEecCCCCCC-eEEEEEEEccccccCCCCCceeEEEEEechhh----------hc--cceece
Q 009539 445 TKHVKKNRDPRWEEEFQFMLEEPPTND-RLHVEVCSVSSRIGLLHPKETLGYIDINLSDV----------VS--NKRINE 511 (532)
Q Consensus 445 T~vv~~t~nP~w~e~f~f~v~~~~~~~-~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l----------~~--~~~~~~ 511 (532)
|++++++.||.|||.|.|.+....... .|.|+|||++. ++++++||++.++++.. ++ ++.+.+
T Consensus 56 T~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~d~~~----~~~~~~iG~~~i~l~~~~~~~~hW~~ll~~~~k~i~~ 131 (138)
T d1w15a_ 56 THVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSER----GSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAK 131 (138)
T ss_dssp CCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCT----TSCCEEEEEEEESTTCCSHHHHHHHHHHHSTTCCEEE
T ss_pred ceeECCCCCCeECcEEEEEecHHHhCccEEEEEEEeCCC----CCCCCEEEEEEEcchhCCchHHHHHHHHhCCCCeeeE
Confidence 999999999999999999986543333 69999999975 57899999999999753 22 234556
Q ss_pred EEEeCC
Q 009539 512 KYHLID 517 (532)
Q Consensus 512 ~~~L~~ 517 (532)
||.|.+
T Consensus 132 Wh~L~~ 137 (138)
T d1w15a_ 132 WHMLCD 137 (138)
T ss_dssp EEECBC
T ss_pred CeEccc
Confidence 777654
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.71 E-value=4.1e-17 Score=137.32 Aligned_cols=98 Identities=23% Similarity=0.288 Sum_probs=85.6
Q ss_pred eEEEEEEeeeecCCCCCCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCCCCCc
Q 009539 412 GLLVVIVHEAQDVEGKHHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLLHPKE 491 (532)
Q Consensus 412 g~L~v~i~~a~~L~~~~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~~~d~ 491 (532)
+.|.|+|.+|++|.+++..||||++.+++.+.+|.+++ +.||.|||.|.|.+.++ .+.|.++|||++. ..|+
T Consensus 2 ~~L~V~v~~a~~l~~~~~~dpYv~l~~~~~k~~T~~~k-~~nP~Wne~f~f~v~~~--~~~L~v~V~d~~~-----~~d~ 73 (128)
T d2cjta1 2 SLLCVGVKKAKFDGAQEKFNTYVTLKVQNVKSTTIAVR-GSQPSWEQDFMFEINRL--DLGLTVEVWNKGL-----IWDT 73 (128)
T ss_dssp EEEEEEEEEEECSSCGGGCEEEEEEEETTEEEECCCEE-SSSCEEEEEEEEEECCC--SSEEEEEEEECCS-----SCEE
T ss_pred eEEEEEEEEEECCCCCCCcCeEEEEEeCCEEEEEEEec-CCCCeEEEEEEEeeccc--cceEEEEEEeCCC-----cCCc
Confidence 58999999999999999999999999999999999886 55999999999999875 4689999999864 3689
Q ss_pred eeEEEEEechhhhcc--ceeceEEEeCC
Q 009539 492 TLGYIDINLSDVVSN--KRINEKYHLID 517 (532)
Q Consensus 492 ~lG~~~i~L~~l~~~--~~~~~~~~L~~ 517 (532)
+||++.|+|+++... ....+||+|..
T Consensus 74 ~lG~~~I~L~~l~~~~~~~~~~W~~L~~ 101 (128)
T d2cjta1 74 MVGTVWIPLRTIRQSNEEGPGEWLTLDS 101 (128)
T ss_dssp EEEEEEEEGGGSCBCSSCCCCEEEECBC
T ss_pred ceEEEEEEehhhccCCCCCCCeeEECCc
Confidence 999999999999753 34578999953
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=3.2e-17 Score=140.73 Aligned_cols=110 Identities=24% Similarity=0.406 Sum_probs=90.9
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCC-CCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCC---CCCEEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLG-ASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDP---ESQAVELAV 324 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g-~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~---~~~~L~v~v 324 (532)
|....+.|.|+|++|+||+.++..+ .+||||++++.+.....++|++++++.||.|||+|.|..... ....|+|+|
T Consensus 17 Y~~~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V 96 (138)
T d1ugka_ 17 YNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTI 96 (138)
T ss_dssp EEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEE
T ss_pred EeCCCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEE
Confidence 4445678999999999999988765 479999999977665567999999999999999999974322 245899999
Q ss_pred EEccCCCCCCeeEEEEEeCccCCCCC-CeEEEEec
Q 009539 325 YDWEQVGKHDKMGMNVVPLKELTPEE-PSVKTLDL 358 (532)
Q Consensus 325 ~d~d~~~~d~~iG~~~i~l~~l~~~~-~~~~~l~l 358 (532)
||+|.+++|++||++.++|+++...+ ....|..+
T Consensus 97 ~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~ 131 (138)
T d1ugka_ 97 LSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREI 131 (138)
T ss_dssp EEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEEC
T ss_pred EECCCCCCCcEEEEEEEEcccccCCCCeEEEEeec
Confidence 99999999999999999999986543 45566665
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.71 E-value=3.6e-18 Score=147.70 Aligned_cols=118 Identities=19% Similarity=0.353 Sum_probs=97.8
Q ss_pred CccccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEcC------
Q 009539 370 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG------ 440 (532)
Q Consensus 370 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~------ 440 (532)
....|+|++++.|. .|.|.|+|++|+||+.. +.+||||++++..
T Consensus 3 ~p~~G~l~lsl~y~---------------------------~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~ 55 (142)
T d1rh8a_ 3 HPITGEIQLQINYD---------------------------LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVM 55 (142)
T ss_dssp CCCCCEEEEEEEEE---------------------------TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCE
T ss_pred CCcceEEEEEEEEe---------------------------CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCccccc
Confidence 45689999999994 46899999999999863 5799999999832
Q ss_pred --------eeEEEeeecCCCCCcccceEEEEecCC--CCCCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceec
Q 009539 441 --------EERKTKHVKKNRDPRWEEEFQFMLEEP--PTNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRIN 510 (532)
Q Consensus 441 --------~~~kT~vv~~t~nP~w~e~f~f~v~~~--~~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~ 510 (532)
.++||++++++.||.|||.|.|.+... .....|.|+|||++. +++|++||++.|+|+++...+...
T Consensus 56 ~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~----~~~~~~lG~~~i~L~~l~~~~~~~ 131 (142)
T d1rh8a_ 56 VVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDR----FSSNDFLGEVLIDLSSTSHLDNTP 131 (142)
T ss_dssp ECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECS----SSCEEEEEEEEEETTSCGGGTTCC
T ss_pred ccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCCEEEEEEEEecC----CCCCeeeEEEEEEhHHcCCCCCce
Confidence 124799999999999999999975332 123479999999975 678899999999999998877788
Q ss_pred eEEEeCCC
Q 009539 511 EKYHLIDS 518 (532)
Q Consensus 511 ~~~~L~~~ 518 (532)
+||+|...
T Consensus 132 ~W~~L~~~ 139 (142)
T d1rh8a_ 132 RWYPLKEQ 139 (142)
T ss_dssp EEEECBCC
T ss_pred EEEECcCc
Confidence 99999764
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.71 E-value=7.9e-18 Score=144.59 Aligned_cols=120 Identities=20% Similarity=0.410 Sum_probs=95.4
Q ss_pred ccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCC---CCCCCCEEEEEEc-----CeeEE
Q 009539 373 RGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEG---KHHTNPYARILFR-----GEERK 444 (532)
Q Consensus 373 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~---~~~~dpyv~v~~~-----~~~~k 444 (532)
+|+|.++++|.|. .+.|.|+|++|+||+. .+.+||||++++. ..++|
T Consensus 1 rG~l~l~l~Y~~~-------------------------~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~k 55 (137)
T d2cm5a1 1 RGKILVSLMYSTQ-------------------------QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHK 55 (137)
T ss_dssp CCEEEEEEEEETT-------------------------TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEE
T ss_pred CcEEEEEEEEECC-------------------------CCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeec
Confidence 6999999999863 7899999999999985 3679999999983 23569
Q ss_pred EeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCCCeEE
Q 009539 445 TKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKNGRI 523 (532)
Q Consensus 445 T~vv~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i 523 (532)
|++++++.||.|||.|.|.+..... ...|.|+|||++. ++++++||++.++++++.. ...+||+|.+.+...+
T Consensus 56 T~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v~~~~~----~~~~~~iG~~~i~l~~~~~--~~~~W~~l~~~~~~~v 129 (137)
T d2cm5a1 56 TQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDI----GKSNDYIGGCQLGISAKGE--RLKHWYECLKNKDKKI 129 (137)
T ss_dssp CCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCS----SSCCEEEEEEEEETTCCHH--HHHHHHHHHHCTTCCE
T ss_pred CEeEcCCCCCccceEEEEEeEHHHccccEEEEEeeeCCC----CCCCCEEEEEEeCccccCc--chhhhhhHhhCCCCee
Confidence 9999999999999999999865422 3479999999875 6789999999999986533 2345666655444333
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.71 E-value=4.2e-18 Score=147.33 Aligned_cols=108 Identities=25% Similarity=0.439 Sum_probs=92.0
Q ss_pred eEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcC-----------CceeeEeeCCCCCceeecEEEEEeeC---CCCC
Q 009539 253 VGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKL-----------PSKKTTVKHKNLNPEWNEEYNFTVRD---PESQ 318 (532)
Q Consensus 253 ~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~-----------~~~~T~v~~~t~nP~Wne~f~f~v~~---~~~~ 318 (532)
.|.|.|+|++|+||+.++..|.+||||++++.+... ..+||++++++.||.|||+|.|.... ....
T Consensus 17 ~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~ 96 (142)
T d1rh8a_ 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK 96 (142)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCC
Confidence 478999999999999999999999999999954321 12478999999999999999997432 2367
Q ss_pred EEEEEEEEccCCCCCCeeEEEEEeCccCCCCCCeEEEEeccc
Q 009539 319 AVELAVYDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLK 360 (532)
Q Consensus 319 ~L~v~v~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~ 360 (532)
.|.|+|||++.+++|++||++.++|.++..+.....|++|.+
T Consensus 97 ~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~ 138 (142)
T d1rh8a_ 97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKE 138 (142)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBC
T ss_pred EEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcC
Confidence 899999999999999999999999999988877888998854
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=6.6e-17 Score=137.71 Aligned_cols=112 Identities=21% Similarity=0.389 Sum_probs=92.0
Q ss_pred ceEEEEEEeeeecCCCC---CCCCCEEEEEEcCeeEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCC
Q 009539 411 GGLLVVIVHEAQDVEGK---HHTNPYARILFRGEERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 487 (532)
Q Consensus 411 ~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~~~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~ 487 (532)
.+.|.|+|++|++++.. +.+||||++.++++.++|++++++.||.|||.|+|.+.+ .+.|.|+|||++. +
T Consensus 5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~---~~~l~~~V~d~d~----~ 77 (133)
T d2nq3a1 5 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP---VSKLHFRVWSHQT----L 77 (133)
T ss_dssp CEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT---TCEEEEEEEECCS----S
T ss_pred ceEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEEe---cceeEEEEEEccC----C
Confidence 47899999999999763 478999999999999999999999999999999999975 3689999999986 6
Q ss_pred CCCceeEEEEEechhhhcc---c--eeceEEEeCCC-----CCeEEEEEEEE
Q 009539 488 HPKETLGYIDINLSDVVSN---K--RINEKYHLIDS-----KNGRIQIELQW 529 (532)
Q Consensus 488 ~~d~~lG~~~i~L~~l~~~---~--~~~~~~~L~~~-----~~G~i~l~~~w 529 (532)
+.|++||++.++|.+++.. . ....++.|.+. ..|+|.+.++.
T Consensus 78 ~~d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~~ 129 (133)
T d2nq3a1 78 KSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDG 129 (133)
T ss_dssp SCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEES
T ss_pred CCCceEEEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEee
Confidence 7899999999999998753 1 22334444332 24998888764
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.70 E-value=6.1e-17 Score=136.23 Aligned_cols=120 Identities=19% Similarity=0.333 Sum_probs=90.7
Q ss_pred EEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCcCCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCCC
Q 009539 254 GILHVKVVKAMNLKKKDLLGASDPYVKLKITEDKLPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGKH 333 (532)
Q Consensus 254 g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~d 333 (532)
+.|.|+|.+|++|..++ +.||||++++++.+ .+|.+++ +.||+|||+|.|.+.++ .+.|.|+|||++.. +|
T Consensus 2 ~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~~k---~~T~~~k-~~nP~Wne~f~f~v~~~-~~~L~v~V~d~~~~-~d 72 (128)
T d2cjta1 2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVK---STTIAVR-GSQPSWEQDFMFEINRL-DLGLTVEVWNKGLI-WD 72 (128)
T ss_dssp EEEEEEEEEEECSSCGG---GCEEEEEEEETTEE---EECCCEE-SSSCEEEEEEEEEECCC-SSEEEEEEEECCSS-CE
T ss_pred eEEEEEEEEEECCCCCC---CcCeEEEEEeCCEE---EEEEEec-CCCCeEEEEEEEeeccc-cceEEEEEEeCCCc-CC
Confidence 68999999999999866 57999999998654 4777775 55999999999999876 57899999999865 69
Q ss_pred CeeEEEEEeCccCCCC--CCeEEEEecccccccCC----CCCCccccEEEEEEEE
Q 009539 334 DKMGMNVVPLKELTPE--EPSVKTLDLLKNMDLND----GQNEKSRGQLVVEFIY 382 (532)
Q Consensus 334 ~~iG~~~i~l~~l~~~--~~~~~~l~l~~~~~~~~----~~~~~~~G~l~l~l~~ 382 (532)
++||++.|+|+++..+ .....|+.|........ .........|.++++|
T Consensus 73 ~~lG~~~I~L~~l~~~~~~~~~~W~~L~~~~~~~~gei~gt~~~~~~~~ll~~~~ 127 (128)
T d2cjta1 73 TMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF 127 (128)
T ss_dssp EEEEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEE
T ss_pred cceEEEEEEehhhccCCCCCCCeeEECCccccCCCCEEEeeecCCCcEEEEEEEc
Confidence 9999999999999743 34556888744321110 0112345578887776
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=3e-17 Score=138.48 Aligned_cols=115 Identities=27% Similarity=0.488 Sum_probs=89.3
Q ss_pred cEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEc-----CeeEEE
Q 009539 374 GQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFR-----GEERKT 445 (532)
Q Consensus 374 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~-----~~~~kT 445 (532)
|+|++++.|.|. .+.|.|+|++|+||+.. +.+||||++++. ..+++|
T Consensus 1 G~l~l~l~y~~~-------------------------~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT 55 (125)
T d2bwqa1 1 GQLSIKLWFDKV-------------------------GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRT 55 (125)
T ss_dssp CEEEEEEEEETT-------------------------TTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEEC
T ss_pred CEEEEEEEEECC-------------------------CCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCcccccc
Confidence 899999999863 67999999999999863 679999999982 245799
Q ss_pred eeecCCCCCcccceEEEE-ecCCC-CCCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeC
Q 009539 446 KHVKKNRDPRWEEEFQFM-LEEPP-TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLI 516 (532)
Q Consensus 446 ~vv~~t~nP~w~e~f~f~-v~~~~-~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 516 (532)
++++++.||.|||.|.|. +.... ....|.|+|||++... .+++++||++.++|+++..++. .+||+|+
T Consensus 56 ~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~d~~~~~--~~~~~~iG~~~i~l~~~~~~~~-~~Wy~L~ 125 (125)
T d2bwqa1 56 KTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVR--EEESEFLGEILIELETALLDDE-PHWYKLQ 125 (125)
T ss_dssp CCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC---------CEEEEEEEEEGGGCCCSSC-EEEEECC
T ss_pred CEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEEEECCCCC--CCCCeeEEEEEEEchhcCCCCC-CEEEeCc
Confidence 999999999999999996 43221 2247999999987520 1346699999999999876543 5799984
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=1.5e-16 Score=136.52 Aligned_cols=121 Identities=21% Similarity=0.331 Sum_probs=95.5
Q ss_pred CCccccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC----CCCCCEEEEEE---cCe
Q 009539 369 NEKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK----HHTNPYARILF---RGE 441 (532)
Q Consensus 369 ~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~----~~~dpyv~v~~---~~~ 441 (532)
+....|+|+++++|.+. .+.|.|+|++|+||+.. +.+||||++++ +..
T Consensus 4 ~~~~~G~l~~sl~Y~~~-------------------------~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~ 58 (138)
T d1ugka_ 4 GSSGLGTLFFSLEYNFE-------------------------RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKH 58 (138)
T ss_dssp CCCCCCEEEEEEEEEGG-------------------------GTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCS
T ss_pred CCCCCEEEEEEEEEeCC-------------------------CCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCE
Confidence 45678999999999864 67899999999999863 24799999999 345
Q ss_pred eEEEeeecCCCCCcccceEEEEecCC-C-CCCeEEEEEEEccccccCCCCCceeEEEEEechhhhcc-ceeceEEEeCCC
Q 009539 442 ERKTKHVKKNRDPRWEEEFQFMLEEP-P-TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSN-KRINEKYHLIDS 518 (532)
Q Consensus 442 ~~kT~vv~~t~nP~w~e~f~f~v~~~-~-~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~-~~~~~~~~L~~~ 518 (532)
++||++++++.||.|||.|.|..... . ....|.|+|||++. ++++++||++.++|+++... .....|+.+..+
T Consensus 59 ~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~d~----~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~~~~ 134 (138)
T d1ugka_ 59 KVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDR----FSRDDIIGEVLIPLSGIELSEGKMLMNREIISG 134 (138)
T ss_dssp EEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECS----SCCCCCCEEEEEECTTCCCTTCCEEEEEECBSS
T ss_pred eEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEECCC----CCCCcEEEEEEEEcccccCCCCeEEEEeeccCC
Confidence 67999999999999999999974322 1 12479999999875 67899999999999998543 344455555443
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=5e-17 Score=139.54 Aligned_cols=109 Identities=17% Similarity=0.251 Sum_probs=92.7
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc-CCceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK-LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAVY 325 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~-~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~ 325 (532)
|+...+.|.|+|++|++|+. .|.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ....|.|+||
T Consensus 21 y~~~~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~ 97 (138)
T d1wfma_ 21 YDCQKAELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLR 97 (138)
T ss_dssp EETTTTEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEE
T ss_pred ECCCCCEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEe
Confidence 44456799999999999953 4778999999997643 2346899999999999999999998643 3678999999
Q ss_pred EccCCCCCCeeEEEEEeCccCCCCCCeEEEEeccc
Q 009539 326 DWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLLK 360 (532)
Q Consensus 326 d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~~ 360 (532)
|++..+++++||++.|+|.++......+.|++|.+
T Consensus 98 d~~~~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~ 132 (138)
T d1wfma_ 98 TCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKT 132 (138)
T ss_dssp ECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred eecccccceeeeEEEEEhHHccCCCCceEeEeCCC
Confidence 99999999999999999999988878889999854
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.67 E-value=1.8e-16 Score=139.08 Aligned_cols=119 Identities=19% Similarity=0.350 Sum_probs=97.5
Q ss_pred CccccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEcC-----e
Q 009539 370 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRG-----E 441 (532)
Q Consensus 370 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~-----~ 441 (532)
.+..|+|.++++|.|. .+.|.|+|++|+||+.. +.+||||++++.. .
T Consensus 8 ~~~~G~l~~sl~Y~~~-------------------------~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~ 62 (157)
T d1uowa_ 8 LEKLGDICFSLRYVPT-------------------------AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLK 62 (157)
T ss_dssp GGCCCEEEEEEEEETT-------------------------TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEE
T ss_pred ceeeeEEEEEEEEcCC-------------------------CCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCcccc
Confidence 4579999999999974 68999999999999863 6899999999843 2
Q ss_pred eEEEeeecCCCCCcccceEEEEecCCCC-CCeEEEEEEEccccccCCCCCceeEEEEEechh----------hhc--cce
Q 009539 442 ERKTKHVKKNRDPRWEEEFQFMLEEPPT-NDRLHVEVCSVSSRIGLLHPKETLGYIDINLSD----------VVS--NKR 508 (532)
Q Consensus 442 ~~kT~vv~~t~nP~w~e~f~f~v~~~~~-~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~----------l~~--~~~ 508 (532)
.+||++++++.||+|||.|.|.+..... ...|.|+|||++. ++++++||++.|++.. ++. ++.
T Consensus 63 ~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d~~~----~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~ 138 (157)
T d1uowa_ 63 KKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDK----IGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRP 138 (157)
T ss_dssp EEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCS----SSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCC
T ss_pred ceecccccCCCCcccCCeEEEEecHHHcCccEEEEEEcccCC----CCCCceeEEEEEecccCChhHHHHHHHHhCCCCc
Confidence 3489999999999999999999876432 2379999999986 6789999999999965 333 235
Q ss_pred eceEEEeCC
Q 009539 509 INEKYHLID 517 (532)
Q Consensus 509 ~~~~~~L~~ 517 (532)
+.+||.|..
T Consensus 139 v~~Wh~L~~ 147 (157)
T d1uowa_ 139 IAQWHTLQV 147 (157)
T ss_dssp EEEEEECBC
T ss_pred eeEeEeCCC
Confidence 678999964
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=1.8e-16 Score=133.68 Aligned_cols=109 Identities=20% Similarity=0.397 Sum_probs=85.1
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCC--cCCceeeEeeCCCCCceeecEEEEE-eeCC--CCCEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFT-VRDP--ESQAVELA 323 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~-v~~~--~~~~L~v~ 323 (532)
+....+.|.|+|++|+||+..+..+.+||||++++.+. ....++|++++++.||.|||+|.|. +... ....|.|+
T Consensus 9 y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~ 88 (125)
T d2bwqa1 9 FDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEIT 88 (125)
T ss_dssp EETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEE
T ss_pred EECCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEE
Confidence 44456799999999999999988899999999999643 2334689999999999999999996 4322 25689999
Q ss_pred EEEccCCC--CCCeeEEEEEeCccCCCCCCeEEEEec
Q 009539 324 VYDWEQVG--KHDKMGMNVVPLKELTPEEPSVKTLDL 358 (532)
Q Consensus 324 v~d~d~~~--~d~~iG~~~i~l~~l~~~~~~~~~l~l 358 (532)
|||++..+ ++++||++.++|+++..... ..|++|
T Consensus 89 v~d~~~~~~~~~~~iG~~~i~l~~~~~~~~-~~Wy~L 124 (125)
T d2bwqa1 89 LWDQARVREEESEFLGEILIELETALLDDE-PHWYKL 124 (125)
T ss_dssp EEEC-------CEEEEEEEEEGGGCCCSSC-EEEEEC
T ss_pred EEECCCCCCCCCeeEEEEEEEchhcCCCCC-CEEEeC
Confidence 99999753 45699999999999986543 457765
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.65 E-value=2.3e-16 Score=135.34 Aligned_cols=98 Identities=32% Similarity=0.424 Sum_probs=77.5
Q ss_pred CCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCC--cCCceeeEeeCCCCCceeecEEEEEeeCCC--CCEEEEEEE
Q 009539 250 RRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDPE--SQAVELAVY 325 (532)
Q Consensus 250 ~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~v~ 325 (532)
....+.|.|+|++|+||+.++..+.+||||++++.+. ....++|++++++.||.|||+|.|.+.... ...|.|+||
T Consensus 11 ~~~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~ 90 (138)
T d1w15a_ 11 QSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVL 90 (138)
T ss_dssp ETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEE
T ss_pred cCCCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEEEEE
Confidence 3456789999999999999998899999999998543 233458999999999999999999985433 457999999
Q ss_pred EccCCCCCCeeEEEEEeCccCC
Q 009539 326 DWEQVGKHDKMGMNVVPLKELT 347 (532)
Q Consensus 326 d~d~~~~d~~iG~~~i~l~~l~ 347 (532)
|++..+++++||++.+++....
T Consensus 91 d~~~~~~~~~iG~~~i~l~~~~ 112 (138)
T d1w15a_ 91 DSERGSRNEVIGRLVLGATAEG 112 (138)
T ss_dssp ECCTTSCCEEEEEEEESTTCCS
T ss_pred eCCCCCCCCEEEEEEEcchhCC
Confidence 9999999999999999997643
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.64 E-value=1.1e-15 Score=129.66 Aligned_cols=111 Identities=19% Similarity=0.330 Sum_probs=88.2
Q ss_pred eEEEEEEeeeecCCC-----CCCCCCEEEEEEcC-----eeEEEeeecCC-CCCcccceEEEEecCCCCCCeEEEEEEEc
Q 009539 412 GLLVVIVHEAQDVEG-----KHHTNPYARILFRG-----EERKTKHVKKN-RDPRWEEEFQFMLEEPPTNDRLHVEVCSV 480 (532)
Q Consensus 412 g~L~v~i~~a~~L~~-----~~~~dpyv~v~~~~-----~~~kT~vv~~t-~nP~w~e~f~f~v~~~~~~~~l~v~V~d~ 480 (532)
..|+|+|++|++|+. .+.+||||++++.+ ++++|++++++ .||.|||+|+|.+..+ ....|.++|||+
T Consensus 4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~-~~~~L~~~V~D~ 82 (131)
T d1qasa2 4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVP-DLALVRFMVEDY 82 (131)
T ss_dssp EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCG-GGCEEEEEEEEC
T ss_pred EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcc-hhceEEEEEEEe
Confidence 579999999999974 24689999999843 56799988765 6999999999998765 446899999999
Q ss_pred cccccCCCCCceeEEEEEechhhhccceeceEEEeCCCC-----CeEEEEEEEEE
Q 009539 481 SSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK-----NGRIQIELQWR 530 (532)
Q Consensus 481 ~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~w~ 530 (532)
+. ++.|++||++.++|+.+..+ .+|++|.+.. .+.|.++++++
T Consensus 83 d~----~~~d~~iG~~~i~l~~l~~g---~~~~~L~~~~g~~~~~~~L~v~i~~~ 130 (131)
T d1qasa2 83 DS----SSKNDFIGQSTIPWNSLKQG---YRHVHLLSKNGDQHPSATLFVKISIQ 130 (131)
T ss_dssp CT----TTCCEEEEEEEEEGGGBCCE---EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred cC----CCCCcEEEEEEEEEeccCCC---CEEEECCCCCcCCCCCCEEEEEEEEE
Confidence 86 57799999999999988543 4689996653 35667777664
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.64 E-value=4.4e-16 Score=136.60 Aligned_cols=98 Identities=39% Similarity=0.625 Sum_probs=84.5
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEeeCCC--CCEEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPE--SQAVELAV 324 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~v 324 (532)
|....+.|.|+|++|+||+..+..+.+||||++++.+.. ...++|++++++.||+|||+|.|.+.... ...|.|+|
T Consensus 20 Y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v 99 (157)
T d1uowa_ 20 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTV 99 (157)
T ss_dssp EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEE
T ss_pred EcCCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEE
Confidence 444568999999999999999988999999999996532 23458999999999999999999986543 56899999
Q ss_pred EEccCCCCCCeeEEEEEeCccC
Q 009539 325 YDWEQVGKHDKMGMNVVPLKEL 346 (532)
Q Consensus 325 ~d~d~~~~d~~iG~~~i~l~~l 346 (532)
||++.++++++||++.|++...
T Consensus 100 ~d~~~~~~~~~iG~~~i~l~~~ 121 (157)
T d1uowa_ 100 LDYDKIGKNDAIGKVFVGYNST 121 (157)
T ss_dssp EECCSSSCCCEEEEEEEETTCC
T ss_pred cccCCCCCCceeEEEEEecccC
Confidence 9999999999999999999764
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.63 E-value=4e-16 Score=133.72 Aligned_cols=109 Identities=28% Similarity=0.486 Sum_probs=88.7
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCC--cCCceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITED--KLPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAV 324 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v 324 (532)
|....+.|.|+|++|+||+..+..+.+||||++++.+. ....++|++++++.||.|||+|.|.+... ....|.|.+
T Consensus 10 Y~~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v 89 (137)
T d2cm5a1 10 YSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISV 89 (137)
T ss_dssp EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEE
T ss_pred EECCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEe
Confidence 34456899999999999999988899999999999643 34456899999999999999999998643 256899999
Q ss_pred EEccCCCCCCeeEEEEEeCccCCCCCCeEEEEecc
Q 009539 325 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 359 (532)
Q Consensus 325 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~ 359 (532)
||++..+++++||++.+++.++..+ ...|+++.
T Consensus 90 ~~~~~~~~~~~iG~~~i~l~~~~~~--~~~W~~l~ 122 (137)
T d2cm5a1 90 WDYDIGKSNDYIGGCQLGISAKGER--LKHWYECL 122 (137)
T ss_dssp EECCSSSCCEEEEEEEEETTCCHHH--HHHHHHHH
T ss_pred eeCCCCCCCCEEEEEEeCccccCcc--hhhhhhHh
Confidence 9999999999999999999865322 23455443
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.62 E-value=1.6e-15 Score=126.76 Aligned_cols=110 Identities=17% Similarity=0.268 Sum_probs=86.8
Q ss_pred EEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEeeCCCCCEEEEEEEEccCCCC
Q 009539 255 ILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDPESQAVELAVYDWEQVGK 332 (532)
Q Consensus 255 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~d~~~~ 332 (532)
.+.|.+.++..++. ..|.+||||++++.+.. ...++|+++++|+||+|||+|+|.+.+ .+.|.|.|||+|
T Consensus 6 ~~~~~~~~~~~~~~--~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~--~~~l~i~V~d~d---- 77 (123)
T d1bdya_ 6 RISFNSYELGSLQA--EDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAA---- 77 (123)
T ss_dssp EEEEEEEECCTTCC--CCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT--TCEEEEEEEEET----
T ss_pred EEEEEEeecccCCC--CCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc--ccEEEEEEEEcc----
Confidence 34455555555544 45889999999997532 123579999999999999999999975 478999999986
Q ss_pred CCeeEEEEEeCccCC-----CCCCeEEEEecccccccCCCCCCccccEEEEEEEEEE
Q 009539 333 HDKMGMNVVPLKELT-----PEEPSVKTLDLLKNMDLNDGQNEKSRGQLVVEFIYKP 384 (532)
Q Consensus 333 d~~iG~~~i~l~~l~-----~~~~~~~~l~l~~~~~~~~~~~~~~~G~l~l~l~~~p 384 (532)
++++|.+.+++.++. .+...+.|++| ...|+|+++++|++
T Consensus 78 d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L------------~~~Gkl~l~v~~f~ 122 (123)
T d1bdya_ 78 EDPMSEVTVGVSVLAERCKKNNGKAEFWLDL------------QPQAKVLMCVQYFL 122 (123)
T ss_dssp TEEEEEEEEEHHHHHHHHHTTTTEEEEEEEC------------BSSCEEEEEEEEEE
T ss_pred ccccCccEEehhheeeccccCCCcccEEEeC------------CCCEEEEEEEEEec
Confidence 789999999999884 35567788876 35899999999985
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.61 E-value=3e-17 Score=142.35 Aligned_cols=120 Identities=20% Similarity=0.344 Sum_probs=95.8
Q ss_pred CccccEEEEEEEEEEccCCCCCcccccccccccCCCCCCCCceEEEEEEeeeecCCCC---CCCCCEEEEEEcCe-----
Q 009539 370 EKSRGQLVVEFIYKPFKEEDLPKSFEESQTVQKAPENTPAGGGLLVVIVHEAQDVEGK---HHTNPYARILFRGE----- 441 (532)
Q Consensus 370 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~i~~a~~L~~~---~~~dpyv~v~~~~~----- 441 (532)
....|+|+++++|.|. .|.|.|+|++|+||+.. +.+||||++++...
T Consensus 3 ~~~~G~l~~sl~Y~~~-------------------------~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~ 57 (145)
T d1dqva2 3 KADLGELNFSLCYLPT-------------------------AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLK 57 (145)
T ss_dssp CSCCCEEEEEEEEETT-------------------------TTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTS
T ss_pred cCcceEEEEEEEEcCC-------------------------CCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccce
Confidence 4678999999999973 78999999999999753 57899999998643
Q ss_pred eEEEeeecCCCCCcccceEEEEecCCC-CCCeEEEEEEEccccccCCCCCceeEEEEEechhhhccceeceEEEeCCCC
Q 009539 442 ERKTKHVKKNRDPRWEEEFQFMLEEPP-TNDRLHVEVCSVSSRIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSK 519 (532)
Q Consensus 442 ~~kT~vv~~t~nP~w~e~f~f~v~~~~-~~~~l~v~V~d~~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~ 519 (532)
++||++++++.||.|||.|.|.+.... ....|.|.|+|++. ++++++||++.|+|+.+... ...+||+|...+
T Consensus 58 ~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v~d~~~----~~~~~~iG~~~i~l~~~~~~-~~~~W~~l~~~p 131 (145)
T d1dqva2 58 KRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDC----IGHNEVIGVCRVGPEAADPH-GREHWAEMLANP 131 (145)
T ss_dssp CEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCS----SSCCEEEEECCCSSCTTCHH-HHHHHHTSSSSS
T ss_pred eecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEEEecCC----CCCCcEEEEEEECchHcCch-hhHHHHHHHhCC
Confidence 468999999999999999999876432 22479999999875 67899999999999876432 235566665443
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.60 E-value=4.7e-15 Score=123.92 Aligned_cols=105 Identities=10% Similarity=0.244 Sum_probs=85.0
Q ss_pred EEEEEeeeecCCC-CCCCCCEEEEEEcCe-----eEEEeeecCCCCCcccceEEEEecCCCCCCeEEEEEEEccccccCC
Q 009539 414 LVVIVHEAQDVEG-KHHTNPYARILFRGE-----ERKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHVEVCSVSSRIGLL 487 (532)
Q Consensus 414 L~v~i~~a~~L~~-~~~~dpyv~v~~~~~-----~~kT~vv~~t~nP~w~e~f~f~v~~~~~~~~l~v~V~d~~~~~~~~ 487 (532)
+.+.++.+..++. .+.+||||+|++++. .++|+++++|+||+|||+|+|.+.+. +.+.|.|||++
T Consensus 7 ~~~~~~~~~~~~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~~---~~l~i~V~d~d------ 77 (123)
T d1bdya_ 7 ISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEG---RVIQIVLMRAA------ 77 (123)
T ss_dssp EEEEEEECCTTCCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCTT---CEEEEEEEEET------
T ss_pred EEEEEeecccCCCCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEccc---cEEEEEEEEcc------
Confidence 3444555555544 468999999999653 34799999999999999999999763 68999999975
Q ss_pred CCCceeEEEEEechhhhc-----cceeceEEEeCCCCCeEEEEEEEEEe
Q 009539 488 HPKETLGYIDINLSDVVS-----NKRINEKYHLIDSKNGRIQIELQWRT 531 (532)
Q Consensus 488 ~~d~~lG~~~i~L~~l~~-----~~~~~~~~~L~~~~~G~i~l~~~w~p 531 (532)
++++|.+.+++.++.. +...+.|++|. ++|+|+++++|-+
T Consensus 78 --d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~--~~Gkl~l~v~~f~ 122 (123)
T d1bdya_ 78 --EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ--PQAKVLMCVQYFL 122 (123)
T ss_dssp --TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECB--SSCEEEEEEEEEE
T ss_pred --ccccCccEEehhheeeccccCCCcccEEEeCC--CCEEEEEEEEEec
Confidence 5899999999999875 34567899996 6899999999964
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.53 E-value=1e-15 Score=132.46 Aligned_cols=110 Identities=35% Similarity=0.577 Sum_probs=89.6
Q ss_pred CCCCeEEEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCCc--CCceeeEeeCCCCCceeecEEEEEeeCC--CCCEEEEEE
Q 009539 249 YRRPVGILHVKVVKAMNLKKKDLLGASDPYVKLKITEDK--LPSKKTTVKHKNLNPEWNEEYNFTVRDP--ESQAVELAV 324 (532)
Q Consensus 249 ~~~~~g~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v 324 (532)
|....|.|.|+|++|+||+..+..|.+||||++++.+.. ...++|++++++.||.|||+|.|.+... ....|.|.|
T Consensus 15 Y~~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v 94 (145)
T d1dqva2 15 YLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAV 94 (145)
T ss_dssp EETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEE
T ss_pred EcCCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEE
Confidence 445678999999999999999988999999999997643 2346899999999999999999987532 356799999
Q ss_pred EEccCCCCCCeeEEEEEeCccCCCCCCeEEEEecc
Q 009539 325 YDWEQVGKHDKMGMNVVPLKELTPEEPSVKTLDLL 359 (532)
Q Consensus 325 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~l~l~ 359 (532)
||++..+++++||++.|++..+... ....|+++.
T Consensus 95 ~d~~~~~~~~~iG~~~i~l~~~~~~-~~~~W~~l~ 128 (145)
T d1dqva2 95 VDYDCIGHNEVIGVCRVGPEAADPH-GREHWAEML 128 (145)
T ss_dssp EECCSSSCCEEEEECCCSSCTTCHH-HHHHHHTSS
T ss_pred EecCCCCCCcEEEEEEECchHcCch-hhHHHHHHH
Confidence 9999999999999999999876432 233455543
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=1.2e-12 Score=108.87 Aligned_cols=87 Identities=22% Similarity=0.457 Sum_probs=67.5
Q ss_pred EEEEEEEEcCCCCcCCCCCCCCcEEEEEEeCC---cCCceeeEe--eCCCCCceeecE-EEE-EeeCCCCCEEEEEEEEc
Q 009539 255 ILHVKVVKAMNLKKKDLLGASDPYVKLKITED---KLPSKKTTV--KHKNLNPEWNEE-YNF-TVRDPESQAVELAVYDW 327 (532)
Q Consensus 255 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~---~~~~~~T~v--~~~t~nP~Wne~-f~f-~v~~~~~~~L~v~v~d~ 327 (532)
+|.|+|++|++|+.+ +.||||++++-|. ..++.+|++ .+++.||.|||+ |.| .+..++...|.|.|||+
T Consensus 2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~ 77 (122)
T d2zkmx2 2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE 77 (122)
T ss_dssp EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEET
T ss_pred EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECC
Confidence 689999999999865 4799999999642 222233433 478999999976 444 45555566899999997
Q ss_pred cCCCCCCeeEEEEEeCccCCCC
Q 009539 328 EQVGKHDKMGMNVVPLKELTPE 349 (532)
Q Consensus 328 d~~~~d~~iG~~~i~l~~l~~~ 349 (532)
| |++||++.+|++.+..+
T Consensus 78 d----~~~lG~~~ipl~~l~~G 95 (122)
T d2zkmx2 78 G----NKFLGHRIIPINALNSG 95 (122)
T ss_dssp T----TEEEEEEEEEGGGBCCE
T ss_pred C----CCEEEEEEEEcccCcCC
Confidence 5 78999999999999876
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=4.5e-11 Score=99.04 Aligned_cols=95 Identities=24% Similarity=0.331 Sum_probs=70.7
Q ss_pred EEEEEEeeeecCCCCCCCCCEEEEEEcC------eeEEEee--ecCCCCCcccce-EEEE-ecCCCCCCeEEEEEEEccc
Q 009539 413 LLVVIVHEAQDVEGKHHTNPYARILFRG------EERKTKH--VKKNRDPRWEEE-FQFM-LEEPPTNDRLHVEVCSVSS 482 (532)
Q Consensus 413 ~L~v~i~~a~~L~~~~~~dpyv~v~~~~------~~~kT~v--v~~t~nP~w~e~-f~f~-v~~~~~~~~l~v~V~d~~~ 482 (532)
.|.|+|++|++|+.. ..||||+|++-| ++.+|++ ..++.||.|||. |.|. +..+ ....|.+.|||++
T Consensus 2 tl~V~Visaq~L~~~-~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~-~l~~L~f~V~D~d- 78 (122)
T d2zkmx2 2 TLSITVISGQFLSER-SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMP-ELASLRVAVMEEG- 78 (122)
T ss_dssp EEEEEEEEEESCCSS-CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSG-GGCEEEEEEEETT-
T ss_pred EEEEEEEEeeCCCCC-CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCC-cccEEEEEEECCC-
Confidence 588999999999864 689999999843 3344544 356899999976 5554 4433 3348999999974
Q ss_pred cccCCCCCceeEEEEEechhhhccceeceEEEeCCCCC
Q 009539 483 RIGLLHPKETLGYIDINLSDVVSNKRINEKYHLIDSKN 520 (532)
Q Consensus 483 ~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~ 520 (532)
|++||++.++|+.+..+ .++.+|.+..+
T Consensus 79 -------~~~lG~~~ipl~~l~~G---yR~vpL~~~~g 106 (122)
T d2zkmx2 79 -------NKFLGHRIIPINALNSG---YHHLCLHSESN 106 (122)
T ss_dssp -------TEEEEEEEEEGGGBCCE---EEEEEEECTTC
T ss_pred -------CCEEEEEEEEcccCcCC---ceEEEccCCCc
Confidence 58999999999987543 36778876544
|