Citrus Sinensis ID: 009568

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530--
Protein Sequence
MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPPPAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDDETIAAGDGPQPGFPYAGNEVQVPSGGFNFS
Secondary Structure (PSIPRED)
ccccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHHcHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHcccccccHHHHHHHHHHHHHHHHHcHHHHHHccccHHHHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHcccHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccccccccccEcccccccccccccccc
Coil and Loop (DISEMBL)
mslrpnaraEVRRNRYKvavdadegrrrrEDNMVEIRKNKREESLLKKRReglqsqqfpppapasnlnlqtkleslpamvagvwsddsslqLEATTQFRKLLsiersppieeviqsgvvprfVEFLMREDYPQLQFEAAWALTniasgtsentkvvidhgAVPIFVKLlaspsddvREQAVWALGnvagdsprcrdLVLSQGALIPLLAQLNERAKLSMLRNATWtlsnfcrgkpqppfdqvrpalpALAQLvhsndeevLTDACWALsylsdgtnDKIQAVIEAGVCPRLvellghpspsvlipalrtvgnivtgddfqtqciitygALPYLLGLLTHSHKKSIKKEACWTisnitagnrDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISnatsggthEQIKYLVREgcikplcdlfvcpdpriVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIEnlqshdnnEIYEKAVKILETYwleeddetiaagdgpqpgfpyagnevqvpsggfnfs
Flexible Loop (DISEMBL)
mslrpnaraevrrnrykvavdadegrrrrednmveirknkreeslLKKRreglqsqqfpppapaSNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLlsiersppieeviqsgVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALgnvagdspRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIenlqshdnneiYEKAVKILETYWLEEDDETIAAGDGPQPGFPYAGNEVQVPSGGFNFS
Low Complexity Region (SEG)
MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFpppapaSNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDDETIAAGDGPQPGFPYAGNEVQVPSGGFNFS
Disordered region (IsUnstruct)
*****************************************************************************AMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP**PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDD******************************
Disordered Region (DISOPRED)
*************************************************************************ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDDE*************************FNF*
Disordered Region (DISEMBL)
***********RRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPPPAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDDETIAAGDGPQPGFPYAGNEVQVPSGGFNFS
Disordered Region (DISPRO)
*******************VD*DEGRRRREDNMVEIRKNKREESLL************************TKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEE********************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPPPAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDDETIAAGDGPQPGFPYAGNEVQVPSGGFNFS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	532	2.2.26 [Sep-21-2011]
Q96321	532	Importin subunit alpha-1	no	no	0.994	0.994	0.814	0.0
Q71VM4	526	Importin subunit alpha-1a	yes	no	0.945	0.956	0.840	0.0
Q9SLX0	534	Importin subunit alpha-1b	no	no	0.994	0.990	0.792	0.0
O22478	527	Importin subunit alpha OS	N/A	no	0.988	0.998	0.793	0.0
O04294	531	Importin subunit alpha-2	no	no	0.992	0.994	0.707	0.0
Q76P29	516	Importin subunit alpha-B	yes	no	0.947	0.976	0.590	1e-172
O35345	536	Importin subunit alpha-7	yes	no	0.922	0.916	0.568	1e-150
Q0V7M0	536	Importin subunit alpha-7	yes	no	0.922	0.916	0.566	1e-149
Q5RBV0	536	Importin subunit alpha-7	yes	no	0.922	0.916	0.566	1e-149
O60684	536	Importin subunit alpha-7	yes	no	0.922	0.916	0.566	1e-149

>sp|Q96321|IMA1_ARATH Importin subunit alpha-1 OS=Arabidopsis thaliana GN=KAP1 PE=1 SV=2

 Score =  889 bits (2298), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/535 (81%), Positives = 480/535 (89%), Gaps = 6/535 (1%)

Query: 1   MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPP 60
           MSLRPNA+ EVRRNRYKVAVDA+EGRRRREDNMVEIRK+KREESL+KKRREG+Q+ Q  P
Sbjct: 1   MSLRPNAKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLMKKRREGMQALQGFP 60

Query: 61  PAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 120
            A A++++   KL+SL  MVAGVWSDD +LQLE+TTQFRKLLSIERSPPIEEVI +GVVP
Sbjct: 61  SASAASVD--KKLDSLKDMVAGVWSDDPALQLESTTQFRKLLSIERSPPIEEVISAGVVP 118

Query: 121 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQA 180
           RFVEFL +EDYP +QFEAAWALTNIASGTS++TKVVIDH AVPIFV+LLASPSDDVREQA
Sbjct: 119 RFVEFLKKEDYPAIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQLLASPSDDVREQA 178

Query: 181 VWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD 240
           VWALGNVAGDSPRCRDLVL  GAL+PLL QLNE AKLSMLRNATWTLSNFCRGKPQP FD
Sbjct: 179 VWALGNVAGDSPRCRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCRGKPQPHFD 238

Query: 241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP 300
           QV+PALPAL +L+HS+DEEVLTDACWALSYLSDGTNDKIQ VI+AGV P+LVELL H SP
Sbjct: 239 QVKPALPALERLIHSDDEEVLTDACWALSYLSDGTNDKIQTVIQAGVVPKLVELLLHHSP 298

Query: 301 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360
           SVLIPALRTVGNIVTGDD QTQC+I  GALP L  LLT +HKKSIKKEACWTISNITAGN
Sbjct: 299 SVLIPALRTVGNIVTGDDIQTQCVINSGALPCLANLLTQNHKKSIKKEACWTISNITAGN 358

Query: 361 RDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLC 420
           +DQIQ V++A L+ PLV+LLQNAEFDIKKEAAWAISNATSGG+H+QIKYLV +GCIKPLC
Sbjct: 359 KDQIQTVVEANLISPLVSLLQNAEFDIKKEAAWAISNATSGGSHDQIKYLVEQGCIKPLC 418

Query: 421 DLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSH 480
           DL VCPDPRI+TVCLEGLENILKVGEAEKN+G  T D+N YAQL+++AEGLEKIENLQSH
Sbjct: 419 DLLVCPDPRIITVCLEGLENILKVGEAEKNLGH-TGDMNYYAQLIDDAEGLEKIENLQSH 477

Query: 481 DNNEIYEKAVKILETYWL-EEDDETIA--AGDGPQPGFPYAGNEVQVPSGGFNFS 532
           DNNEIYEKAVKILETYWL EEDDET      DG Q GF + GN+  VPSGGFNFS
Sbjct: 478 DNNEIYEKAVKILETYWLEEEDDETQQPPGVDGSQAGFQFGGNQAPVPSGGFNFS 532

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs (By similarity). Cellular receptor for the nuclear import of the virD2 protein of Agrobacterium.
Arabidopsis thaliana (taxid: 3702)

>sp|Q71VM4|IMA1A_ORYSJ Importin subunit alpha-1a OS=Oryza sativa subsp. japonica GN=Os01g0253300 PE=1 SV=2

 Score =  877 bits (2265), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/507 (84%), Positives = 466/507 (91%), Gaps = 4/507 (0%)

Query: 1   MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPP 60
           MSLRP+ R EVRRNRYKVAVDA+EGRRRREDNMVEIRK++REESLLKKRREGLQ+Q  P 
Sbjct: 1   MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQA-PV 59

Query: 61  PAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 120
           PA A+   +  KLESLPAM+ GV+SDD++LQLEATTQFRKLLSIERSPPIEEVIQSGVVP
Sbjct: 60  PASAAT-GVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 118

Query: 121 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQA 180
           RFV+FL RED+PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL S SDDVREQA
Sbjct: 119 RFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQA 178

Query: 181 VWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD 240
           VWALGNVAGDSP+CRDLVL+ GAL+PLLAQLNE  KLSMLRNATWTLSNFCRGKPQP F+
Sbjct: 179 VWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFE 238

Query: 241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP 300
           Q RPALPALA+L+HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSP
Sbjct: 239 QTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSP 298

Query: 301 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360
           SVLIPALRTVGNIVTGDD QTQCII + ALP LL LLT + KKSIKKEACWTISNITAGN
Sbjct: 299 SVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGN 358

Query: 361 RDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLC 420
           +DQIQAVI+AG++GPLVNLLQ AEFDIKKEAAWAISNATSGG+H+QIKYLV EGCIKPLC
Sbjct: 359 KDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLC 418

Query: 421 DLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSH 480
           DL +CPD RIVTVCLEGLENILKVGE +K +  A  DVN ++Q+++EAEGLEKIENLQSH
Sbjct: 419 DLLICPDIRIVTVCLEGLENILKVGETDKTL--AAGDVNVFSQMIDEAEGLEKIENLQSH 476

Query: 481 DNNEIYEKAVKILETYWLEEDDETIAA 507
           DNNEIYEKAVKILE YW++E+D+T+ A
Sbjct: 477 DNNEIYEKAVKILEAYWMDEEDDTMGA 503

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SLX0|IMA1B_ORYSJ Importin subunit alpha-1b OS=Oryza sativa subsp. japonica GN=Os05g0155500 PE=1 SV=2

 Score =  869 bits (2246), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/535 (79%), Positives = 471/535 (88%), Gaps = 6/535 (1%)

Query: 1   MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGL----QSQ 56
           MSLRP+ RAEVRR+RYKVAVDADEGRRRREDNMVEIRK++REESLLKKRR+GL     + 
Sbjct: 1   MSLRPSERAEVRRSRYKVAVDADEGRRRREDNMVEIRKSRREESLLKKRRDGLPAAAAAA 60

Query: 57  QFPPPAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQS 116
               P  A +  LQ KLE LPAMV  V SDDS++QLEATTQFRKLLSIERSPPIEEVI +
Sbjct: 61  AAASPLLAHSSALQQKLEGLPAMVQAVQSDDSAVQLEATTQFRKLLSIERSPPIEEVINT 120

Query: 117 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDV 176
           GVVPRF+ FL REDYPQLQFEAAWALTNIASGTS+NTKVV++ GAVPIFVKLL+SPS+DV
Sbjct: 121 GVVPRFIAFLQREDYPQLQFEAAWALTNIASGTSDNTKVVVESGAVPIFVKLLSSPSEDV 180

Query: 177 REQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ 236
           REQAVWALGNVAGDSP+CRDLVL+ G L PLL QLNE AKLSMLRNATWTLSNFCRGKPQ
Sbjct: 181 REQAVWALGNVAGDSPKCRDLVLASGGLYPLLQQLNEHAKLSMLRNATWTLSNFCRGKPQ 240

Query: 237 PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG 296
           P F+QV+PAL AL +L+HS DEEVLTDACWALSYLSDGTNDKIQAVIE+GV PRLVELL 
Sbjct: 241 PNFEQVKPALSALQRLIHSQDEEVLTDACWALSYLSDGTNDKIQAVIESGVFPRLVELLM 300

Query: 297 HPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNI 356
           HPS SVLIPALRTVGNIVTGDD QTQC+I + ALP LL LLT++HKKSIKKEACWTISNI
Sbjct: 301 HPSASVLIPALRTVGNIVTGDDMQTQCVIDHQALPCLLNLLTNNHKKSIKKEACWTISNI 360

Query: 357 TAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCI 416
           TAGNR+QIQAVI+A ++ PLV+LLQ AEFDIKKEAAWAISNATSGGTH+QIKYLV +GCI
Sbjct: 361 TAGNREQIQAVINANIIAPLVHLLQTAEFDIKKEAAWAISNATSGGTHDQIKYLVAQGCI 420

Query: 417 KPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIEN 476
           KPLCDL VCPDPRIVTVCLEGLENILKVGEAEKN+G    DVN YAQ++++AEGLEKIEN
Sbjct: 421 KPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLG--AGDVNSYAQMIDDAEGLEKIEN 478

Query: 477 LQSHDNNEIYEKAVKILETYWLEEDDETIAAGDGPQPGFPYAGNEVQVPSGGFNF 531
           LQSHDN EIYEKAVK+LE+YWLEE+D+ + +GD  Q GF +   +  VPSGGFNF
Sbjct: 479 LQSHDNTEIYEKAVKMLESYWLEEEDDAMPSGDNAQNGFNFGNQQPNVPSGGFNF 533

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. In conjunction with importin beta-1, mediates the nuclear envelope docking, and the subsequent translocation into the nucleus of the constitutive morphogenetic 1 (COP1) protein containing bipartite NLS motif.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O22478|IMA_SOLLC Importin subunit alpha OS=Solanum lycopersicum PE=2 SV=2

 Score =  869 bits (2246), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/533 (79%), Positives = 475/533 (89%), Gaps = 7/533 (1%)

Query: 1   MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGL-QSQQFP 59
           MSLRPN+R E RR+RYKVAVDA+EGRRRREDNMVEIRKNKREE+LLKKRREGL Q+QQFP
Sbjct: 1   MSLRPNSRTEARRSRYKVAVDAEEGRRRREDNMVEIRKNKREENLLKKRREGLLQAQQFP 60

Query: 60  PPAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVV 119
             A  S+L+   KLE+LP ++AGVWSDDSSLQLE TTQFRKLLSIER+PPIEEVIQSGVV
Sbjct: 61  STAAVSHLD--KKLETLPELIAGVWSDDSSLQLECTTQFRKLLSIERNPPIEEVIQSGVV 118

Query: 120 PRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQ 179
           PRFVEFL R+DYPQLQFEAAWALTNIASGTSENTKVVID+G+VPIF++LL+SPSDDVREQ
Sbjct: 119 PRFVEFLARDDYPQLQFEAAWALTNIASGTSENTKVVIDYGSVPIFIRLLSSPSDDVREQ 178

Query: 180 AVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF 239
           AVWALGN+AGDSP+ RDLVL  GAL+ LLAQ NE+AKLSMLRNATWTLSNFCRGKPQP F
Sbjct: 179 AVWALGNIAGDSPKYRDLVLGHGALVALLAQFNEQAKLSMLRNATWTLSNFCRGKPQPLF 238

Query: 240 DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS 299
           +Q + ALP L +L+HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVC RLVELL H S
Sbjct: 239 EQTKAALPTLGRLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCSRLVELLLHSS 298

Query: 300 PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG 359
           PSVLIPALRTVGNIVTGDD QTQ +I + ALP L+ LLT ++KKSIKKEACWTISNITAG
Sbjct: 299 PSVLIPALRTVGNIVTGDDIQTQVMIDHHALPCLVNLLTQNYKKSIKKEACWTISNITAG 358

Query: 360 NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPL 419
           NR+QIQ VI+AG++ PLV LLQNAEF+IKKEAAWAISNATSGG H+QIK+LV +GCIKPL
Sbjct: 359 NRNQIQIVIEAGIIAPLVYLLQNAEFEIKKEAAWAISNATSGGNHDQIKFLVSQGCIKPL 418

Query: 420 CDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQS 479
           CDL VCPDPRIVTVCLEGLENILK+GEA+K++G  T  VN YAQL++EAEGLEKIENLQS
Sbjct: 419 CDLLVCPDPRIVTVCLEGLENILKIGEADKDLGN-TEGVNVYAQLIDEAEGLEKIENLQS 477

Query: 480 HDNNEIYEKAVKILETYWLEEDDETIAAGDGPQPGFPYAGNEVQVPSGGFNFS 532
           HDN EIYEKAVKILETYWLEE+D  ++  +     F + G ++ +PSGGFNFS
Sbjct: 478 HDNTEIYEKAVKILETYWLEEEDVPVSLNEDQ---FEFGGADISLPSGGFNFS 527

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Solanum lycopersicum (taxid: 4081)

>sp|O04294|IMA2_ARATH Importin subunit alpha-2 OS=Arabidopsis thaliana GN=KAP2 PE=1 SV=2

 Score =  766 bits (1978), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/533 (70%), Positives = 443/533 (83%), Gaps = 5/533 (0%)

Query: 1   MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPP 60
           MSLRP+A+ EVRRNRYKVAVDA+EGRRRREDN+VEIRKNKREE+L KKR     +     
Sbjct: 1   MSLRPSAKTEVRRNRYKVAVDAEEGRRRREDNLVEIRKNKREENLQKKRFTSSMAFGSAT 60

Query: 61  PAPASNLNLQTKL-ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVV 119
                +L+   +L ++LPAMVAG+WS+DS+ QLEAT   RKLLSIE++PPI EV+QSGVV
Sbjct: 61  GQTEQDLSSANQLKDNLPAMVAGIWSEDSNSQLEATNLLRKLLSIEQNPPINEVVQSGVV 120

Query: 120 PRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQ 179
           PR V+FL R+D+P+LQFEAAWALTNIASGTSENT V+I+ GAVPIF++LL+S S+DVREQ
Sbjct: 121 PRVVKFLSRDDFPKLQFEAAWALTNIASGTSENTNVIIESGAVPIFIQLLSSASEDVREQ 180

Query: 180 AVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF 239
           AVWALGNVAGDSP+CRDLVLS GA+ PLL+Q NE  KLSMLRNATWTLSNFCRGKP P F
Sbjct: 181 AVWALGNVAGDSPKCRDLVLSYGAMTPLLSQFNENTKLSMLRNATWTLSNFCRGKPPPAF 240

Query: 240 DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS 299
           +Q +PALP L +LV S DEEVLTDACWALSYLSD +NDKIQAVIEAGV PRL++LLGH S
Sbjct: 241 EQTQPALPVLERLVQSMDEEVLTDACWALSYLSDNSNDKIQAVIEAGVVPRLIQLLGHSS 300

Query: 300 PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG 359
           PSVLIPALRT+GNIVTGDD QTQ ++   ALP LL LL +++KKSIKKEACWTISNITAG
Sbjct: 301 PSVLIPALRTIGNIVTGDDLQTQMVLDQQALPCLLNLLKNNYKKSIKKEACWTISNITAG 360

Query: 360 NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPL 419
           N DQIQAVIDAG++  LV +LQ+AEF++KKEAAW ISNATSGGTH+QIK++V +GCIKPL
Sbjct: 361 NADQIQAVIDAGIIQSLVWVLQSAEFEVKKEAAWGISNATSGGTHDQIKFMVSQGCIKPL 420

Query: 420 CDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQS 479
           CDL  CPD ++VTVCLE LENIL VGEAEKN+G  T + N YAQ+++EAEGLEKIENLQS
Sbjct: 421 CDLLTCPDLKVVTVCLEALENILVVGEAEKNLG-HTGEDNLYAQMIDEAEGLEKIENLQS 479

Query: 480 HDNNEIYEKAVKILETYWL-EEDDETIAAGDGPQPGFPYAGNEVQVPSGGFNF 531
           HDNN+IY+KAVKILET+W  + ++E       PQ GF +      VP G FNF
Sbjct: 480 HDNNDIYDKAVKILETFWTEDNEEEGNDENHAPQSGFQFGS--TNVPPGQFNF 530

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q76P29|IMAB_DICDI Importin subunit alpha-B OS=Dictyostelium discoideum GN=DDB_G0272318 PE=3 SV=1

 Score =  605 bits (1560), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 306/518 (59%), Positives = 393/518 (75%), Gaps = 14/518 (2%)

Query: 7   ARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPPPAPASN 66
           ++ E R+++YK ++D+DE RR+RE+  + IRKNKREESLLKKR     +Q  P   P   
Sbjct: 4   SKQETRKSQYKKSIDSDESRRKREEASLSIRKNKREESLLKKR-----TQAVPGSTPVKV 58

Query: 67  LNL-QTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEF 125
            +L   +LE LP++VA + S++  L L++TT FRKLLSIE+SPPIEEVI++G+VPR V+F
Sbjct: 59  DSLINQRLEQLPSLVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKF 118

Query: 126 LMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALG 185
           L  +D+PQLQFEAAWALTNIASGT E T+VVI++GA+ +FV LL+SP DDVREQAVWALG
Sbjct: 119 LYMQDFPQLQFEAAWALTNIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQAVWALG 178

Query: 186 NVAGDSPRCRDLVLSQGALIPLLAQLNERA--KLSMLRNATWTLSNFCRGKPQPPFDQVR 243
           N+AGDS  CRDLVLS  AL PLL+ L   A  K+SM+RNATWTLSNFCRGKPQPPF+ VR
Sbjct: 179 NIAGDSHYCRDLVLSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGKPQPPFEIVR 238

Query: 244 PALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVL 303
            +LP LA+L++  DEEVL DACWALSYLSDG+N++IQ VI+A VC ++VELLGHP+ +V 
Sbjct: 239 ASLPVLAKLIYYQDEEVLIDACWALSYLSDGSNERIQEVIDAKVCRKMVELLGHPTIAVQ 298

Query: 304 IPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ 363
            PALRT+GNIVTGDD QTQ +++  AL +LL LL  S K++I+KEACWTISNITAG+++Q
Sbjct: 299 TPALRTIGNIVTGDDNQTQIVLSVQALSHLLNLL-QSPKRAIRKEACWTISNITAGDKNQ 357

Query: 364 IQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLF 423
           IQ VIDA ++  LV LL NAEF+I+KEAAWAISNATS GT +QI +LV +GC+KPLCDL 
Sbjct: 358 IQQVIDANIIPSLVYLLANAEFEIQKEAAWAISNATSCGTPQQIHFLVSQGCVKPLCDLL 417

Query: 424 VCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNN 483
              DPRI+ V LEG+ENIL  G+ E  +      VN Y +++E+A+GL KI +LQ H N 
Sbjct: 418 KVSDPRIINVALEGIENILVAGKKEAQV----TGVNPYKKIIEDADGLGKIYDLQHHMNK 473

Query: 484 EIYEKAVKILETYWL-EEDDETIAAGDGPQPGFPYAGN 520
           + +EK  +I+ TY   E++DE     +G    F    N
Sbjct: 474 DTFEKVSRIISTYLEDEQEDEGDLMPEGSSFSFSNQTN 511

Functions in nuclear protein import via a substrate-importin alpha-beta transport complex that passes though the nuclear pore complexes (NPC). Binds specifically and directly to substrates containing either a simple or bipartite NLS motif.

Dictyostelium discoideum (taxid: 44689)

>sp|O35345|IMA7_MOUSE Importin subunit alpha-7 OS=Mus musculus GN=Kpna6 PE=1 SV=2

 Score =  531 bits (1369), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 289/508 (56%), Positives = 356/508 (70%), Gaps = 17/508 (3%)

Query: 34  VEIRKNKREESLLKKRREGLQSQQFPPPAPASNLNLQTKLESLPA-------MVAGVWSD 86
           +++RK KRE+ L K+R   L +++    A   +L + + + S          MV  ++SD
Sbjct: 36  IQLRKQKREQQLFKRRNVELINEE---AAMFDSLLMDSYVSSTTGESVITREMVEMLFSD 92

Query: 87  DSSLQLEATTQFRKLLSIERSPPIEEVIQS-GVVPRFVEFLMREDYPQLQFEAAWALTNI 145
           DS LQL  T +FRKLLS E SPPI+EVI + GVV RFVEFL R +   LQFEAAWALTNI
Sbjct: 93  DSDLQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCTLQFEAAWALTNI 152

Query: 146 ASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALI 205
           ASGTS+ TK+VI+ GAVPIF++LL S  +DV+EQAVWALGN+AGDS  CRD VL+   L 
Sbjct: 153 ASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSLCRDYVLNCSILN 212

Query: 206 PLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDA 264
           PLL  L +  +L+M RNA W LSN CRGK P P F +V P LP L++L+ S+D ++L DA
Sbjct: 213 PLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLADA 272

Query: 265 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCI 324
           CWALSYLSDG N+KIQAVI++GVC RLVELL H    V  PALR VGNIVTGDD QTQ I
Sbjct: 273 CWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTGDDIQTQVI 332

Query: 325 ITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAE 384
           +   ALP LL LL+ S K+SI+KEACWTISNITAGNR QIQAVIDA +   L+ +LQ AE
Sbjct: 333 LNCSALPCLLHLLS-SSKESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEILQKAE 391

Query: 385 FDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV 444
           F  +KEAAWAI+NATSGGT EQI+YLV  GCIKPLCDL    D +IV V L GLENIL++
Sbjct: 392 FRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALNGLENILRL 451

Query: 445 GEAE-KNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDDE 503
           GE E K  G+    VN Y  L+EEA GL+KIE LQSH+N EIY+KA  ++E Y+  EDD+
Sbjct: 452 GEQESKRSGSG---VNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGVEDDD 508

Query: 504 TIAAGDGPQPGFPYAGNEVQVPSGGFNF 531
           +  A    +    +   + + P  GF  
Sbjct: 509 SSLAPQVDETQQQFIFQQPEAPMEGFQL 536

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Mus musculus (taxid: 10090)

>sp|Q0V7M0|IMA7_BOVIN Importin subunit alpha-7 OS=Bos taurus GN=KPNA6 PE=2 SV=1

 Score =  529 bits (1362), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 288/508 (56%), Positives = 355/508 (69%), Gaps = 17/508 (3%)

Query: 34  VEIRKNKREESLLKKRREGLQSQQFPPPAPASNLNLQTKLESLPA-------MVAGVWSD 86
           +++RK KRE+ L K+R   L +++    A   +L + + + S          MV  ++SD
Sbjct: 36  IQLRKQKREQQLFKRRNVELINEE---AAMFDSLLMDSYVSSTTGESVITREMVEMLFSD 92

Query: 87  DSSLQLEATTQFRKLLSIERSPPIEEVIQS-GVVPRFVEFLMREDYPQLQFEAAWALTNI 145
           D  LQL  T +FRKLLS E SPPI+EVI + GVV RFVEFL R +   LQFEAAWALTNI
Sbjct: 93  DPDLQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCTLQFEAAWALTNI 152

Query: 146 ASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALI 205
           ASGTS+ TK+VI+ GAVPIF++LL S  +DV+EQAVWALGN+AGDS  CRD VL+   L 
Sbjct: 153 ASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDYVLNCSILN 212

Query: 206 PLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDA 264
           PLL  L +  +L+M RNA W LSN CRGK P P F +V P LP L++L+ S+D ++L DA
Sbjct: 213 PLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLADA 272

Query: 265 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCI 324
           CWALSYLSDG N+KIQAVI++GVC RLVELL H    V  PALR VGNIVTGDD QTQ I
Sbjct: 273 CWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDNKVASPALRAVGNIVTGDDIQTQVI 332

Query: 325 ITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAE 384
           +   ALP LL LL+ S K+SI+KEACWTISNITAGNR QIQAVIDA +   L+ +LQ AE
Sbjct: 333 LNCSALPCLLHLLS-SSKESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEILQKAE 391

Query: 385 FDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV 444
           F  +KEAAWAI+NATSGGT EQI+YLV  GCIKPLCDL    D +IV V L GLENIL++
Sbjct: 392 FRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALNGLENILRL 451

Query: 445 GEAE-KNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDDE 503
           GE E K  G+    VN Y  L+EEA GL+KIE LQSH+N EIY+KA  ++E Y+  EDD+
Sbjct: 452 GEQEGKRSGSG---VNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGVEDDD 508

Query: 504 TIAAGDGPQPGFPYAGNEVQVPSGGFNF 531
           +  A    +    +   + + P  GF  
Sbjct: 509 SSLAPQVDETQQQFIFQQPEAPMEGFQL 536

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Bos taurus (taxid: 9913)

>sp|Q5RBV0|IMA7_PONAB Importin subunit alpha-7 OS=Pongo abelii GN=KPNA6 PE=2 SV=1

 Score =  527 bits (1358), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 288/508 (56%), Positives = 355/508 (69%), Gaps = 17/508 (3%)

Query: 34  VEIRKNKREESLLKKRREGLQSQQFPPPAPASNLNLQTKLESLPA-------MVAGVWSD 86
           +++RK KRE+ L K+R   L +++    A   +L + + + S          MV  ++SD
Sbjct: 36  IQLRKQKREQQLFKRRNVELINEE---AAMFDSLLMDSYVSSTTGESVITREMVEMLFSD 92

Query: 87  DSSLQLEATTQFRKLLSIERSPPIEEVIQS-GVVPRFVEFLMREDYPQLQFEAAWALTNI 145
           DS LQL  T +FRKLLS E SPPI+EVI +  VV RFVEFL R +   LQFEAAWALTNI
Sbjct: 93  DSDLQLATTQKFRKLLSKEPSPPIDEVINTPRVVDRFVEFLKRNENCTLQFEAAWALTNI 152

Query: 146 ASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALI 205
           ASGTS+ TK+VI+ GAVPIF++LL S  +DV+EQAVWALGN+AGDS  CRD VL+   L 
Sbjct: 153 ASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDYVLNCSILN 212

Query: 206 PLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDA 264
           PLL  L +  +L+M RNA W LSN CRGK P P F +V P LP L++L+ S+D ++L DA
Sbjct: 213 PLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLADA 272

Query: 265 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCI 324
           CWALSYLSDG N+KIQAVI++GVC RLVELL H    V  PALR VGNIVTGDD QTQ I
Sbjct: 273 CWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTGDDIQTQVI 332

Query: 325 ITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAE 384
           +   ALP LL LL+ S K+SI+KEACWTISNITAGNR QIQAVIDA +   L+ +LQ AE
Sbjct: 333 LNCSALPCLLHLLS-SPKESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEILQKAE 391

Query: 385 FDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV 444
           F  +KEAAWAI+NATSGGT EQI+YLV  GCIKPLCDL    D +IV V L GLENIL++
Sbjct: 392 FRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALNGLENILRL 451

Query: 445 GEAE-KNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDDE 503
           GE E K  G+    VN Y  L+EEA GL+KIE LQSH+N EIY+KA  ++E Y+  EDD+
Sbjct: 452 GEQEGKRSGSG---VNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGVEDDD 508

Query: 504 TIAAGDGPQPGFPYAGNEVQVPSGGFNF 531
           +  A    +    +   + + P  GF  
Sbjct: 509 SSLAPQVDETQQQFIFQQPEAPMEGFQL 536

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Pongo abelii (taxid: 9601)

>sp|O60684|IMA7_HUMAN Importin subunit alpha-7 OS=Homo sapiens GN=KPNA6 PE=1 SV=1

 Score =  527 bits (1358), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 288/508 (56%), Positives = 355/508 (69%), Gaps = 17/508 (3%)

Query: 34  VEIRKNKREESLLKKRREGLQSQQFPPPAPASNLNLQTKLESLPA-------MVAGVWSD 86
           +++RK KRE+ L K+R   L +++    A   +L + + + S          MV  ++SD
Sbjct: 36  IQLRKQKREQQLFKRRNVELINEE---AAMFDSLLMDSYVSSTTGESVITREMVEMLFSD 92

Query: 87  DSSLQLEATTQFRKLLSIERSPPIEEVIQS-GVVPRFVEFLMREDYPQLQFEAAWALTNI 145
           DS LQL  T +FRKLLS E SPPI+EVI +  VV RFVEFL R +   LQFEAAWALTNI
Sbjct: 93  DSDLQLATTQKFRKLLSKEPSPPIDEVINTPRVVDRFVEFLKRNENCTLQFEAAWALTNI 152

Query: 146 ASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALI 205
           ASGTS+ TK+VI+ GAVPIF++LL S  +DV+EQAVWALGN+AGDS  CRD VL+   L 
Sbjct: 153 ASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDYVLNCSILN 212

Query: 206 PLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDA 264
           PLL  L +  +L+M RNA W LSN CRGK P P F +V P LP L++L+ S+D ++L DA
Sbjct: 213 PLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLADA 272

Query: 265 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCI 324
           CWALSYLSDG N+KIQAVI++GVC RLVELL H    V  PALR VGNIVTGDD QTQ I
Sbjct: 273 CWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTGDDIQTQVI 332

Query: 325 ITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAE 384
           +   ALP LL LL+ S K+SI+KEACWTISNITAGNR QIQAVIDA +   L+ +LQ AE
Sbjct: 333 LNCSALPCLLHLLS-SPKESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEILQKAE 391

Query: 385 FDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV 444
           F  +KEAAWAI+NATSGGT EQI+YLV  GCIKPLCDL    D +IV V L GLENIL++
Sbjct: 392 FRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALNGLENILRL 451

Query: 445 GEAE-KNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDDE 503
           GE E K  G+    VN Y  L+EEA GL+KIE LQSH+N EIY+KA  ++E Y+  EDD+
Sbjct: 452 GEQEGKRSGSG---VNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGVEDDD 508

Query: 504 TIAAGDGPQPGFPYAGNEVQVPSGGFNF 531
           +  A    +    +   + + P  GF  
Sbjct: 509 SSLAPQVDETQQQFIFQQPEAPMEGFQL 536

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	532
356556046	531	PREDICTED: importin subunit alpha-1-like	0.996	0.998	0.883	0.0
225431871	529	PREDICTED: importin subunit alpha-1 [Vit	0.994	1.0	0.875	0.0
356564581	530	PREDICTED: importin subunit alpha-1-like	0.996	1.0	0.875	0.0
356529274	531	PREDICTED: importin subunit alpha-1-like	0.996	0.998	0.878	0.0
224110258	529	predicted protein [Populus trichocarpa]	0.994	1.0	0.870	0.0
224130302	529	predicted protein [Populus trichocarpa]	0.994	1.0	0.866	0.0
356521809	530	PREDICTED: LOW QUALITY PROTEIN: importin	0.996	1.0	0.862	0.0
119866037	529	Impa2 [Nicotiana benthamiana]	0.992	0.998	0.860	0.0
13752562	529	importin alpha 2 [Capsicum annuum]	0.992	0.998	0.853	0.0
449464730	530	PREDICTED: importin subunit alpha-1-like	0.994	0.998	0.857	0.0

>gi|356556046|ref|XP_003546338.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  961 bits (2483), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/533 (88%), Positives = 500/533 (93%), Gaps = 3/533 (0%)

Query: 1   MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQ-FP 59
           MSLRPNAR EVRRNRYKVAVDADEGRRRREDNMVEIRK+KREESL KKRREGLQ+QQ FP
Sbjct: 1   MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLQKKRREGLQAQQQFP 60

Query: 60  PPAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVV 119
            P  AS++ ++ KLESLPAMVAGVWSDD+S QLEATTQFRKLLSIERSPPIEEVIQ+GVV
Sbjct: 61  TPLQASSI-VEKKLESLPAMVAGVWSDDNSQQLEATTQFRKLLSIERSPPIEEVIQAGVV 119

Query: 120 PRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQ 179
           PRFVEFL+RED+PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL+SPSDDVREQ
Sbjct: 120 PRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQ 179

Query: 180 AVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF 239
           AVWALGNVAGDSPRCRDLVLS GALIPLLAQLNE AKLSMLRNATWTLSNFCRGKPQPPF
Sbjct: 180 AVWALGNVAGDSPRCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPF 239

Query: 240 DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS 299
           +QVR ALPAL +LV SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV+LL HPS
Sbjct: 240 EQVRAALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVQLLLHPS 299

Query: 300 PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG 359
           PSVLIPALRTVGNIVTGDD QTQ II +GALP LL LLTH+HKKSIKKEACWTISNITAG
Sbjct: 300 PSVLIPALRTVGNIVTGDDMQTQTIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAG 359

Query: 360 NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPL 419
           NRDQIQAVI+AGL+ PLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLV +GCIKPL
Sbjct: 360 NRDQIQAVIEAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPL 419

Query: 420 CDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQS 479
           CDL VCPDPRIVTVCLEGLENILKVGEAEK++G  T DVN YAQ+++EAEGLEKIENLQS
Sbjct: 420 CDLLVCPDPRIVTVCLEGLENILKVGEAEKSLGN-TGDVNLYAQMIDEAEGLEKIENLQS 478

Query: 480 HDNNEIYEKAVKILETYWLEEDDETIAAGDGPQPGFPYAGNEVQVPSGGFNFS 532
           HDNNEIYEKAVKILETYWLE+DDET+ AGDG QPGF +  N++ VPSGGFNFS
Sbjct: 479 HDNNEIYEKAVKILETYWLEDDDETLPAGDGAQPGFNFGNNDLPVPSGGFNFS 531

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431871|ref|XP_002275593.1| PREDICTED: importin subunit alpha-1 [Vitis vinifera] gi|296083287|emb|CBI22923.3| unnamed protein product [Vitis vinifera]

 Score =  960 bits (2481), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/532 (87%), Positives = 498/532 (93%), Gaps = 3/532 (0%)

Query: 1   MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPP 60
           MSLRP+AR EVRRNRYKVAVDA+EGRRRREDNMVEIRK+KREESL KKRREGLQ+QQFP 
Sbjct: 1   MSLRPSARTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLQKKRREGLQAQQFPA 60

Query: 61  PAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 120
            A AS +  + KLESLP+MVAGVWSD+SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVP
Sbjct: 61  AAHASTV--EKKLESLPSMVAGVWSDNSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 118

Query: 121 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQA 180
           RFVEFL+RED+PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL SPSDDVREQA
Sbjct: 119 RFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQA 178

Query: 181 VWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD 240
           VWALGNVAGDSPRCRDLVL  GALIPLLAQLNE AKLSMLRNATWTLSNFCRGKPQPPFD
Sbjct: 179 VWALGNVAGDSPRCRDLVLGHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFD 238

Query: 241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP 300
           QV+PALPAL +LVHS+DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSP
Sbjct: 239 QVKPALPALERLVHSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSP 298

Query: 301 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360
           SVLIPALRTVGNIVTGDD QTQ II +GALP LL LLTH+HKKSIKKEACWTISNITAGN
Sbjct: 299 SVLIPALRTVGNIVTGDDIQTQSIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAGN 358

Query: 361 RDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLC 420
           ++QIQAVI+AG++ PLV+LLQ AEFDIKKEAAWAISNATSGGTHEQIKYLV +GCIKPLC
Sbjct: 359 KEQIQAVIEAGVIAPLVHLLQTAEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLC 418

Query: 421 DLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSH 480
           DL VCPDPRIVTVCLEGLENILKVGEAEK +G  + DVN YAQL+++AEGLEKIENLQSH
Sbjct: 419 DLLVCPDPRIVTVCLEGLENILKVGEAEKTLGN-SGDVNYYAQLIDDAEGLEKIENLQSH 477

Query: 481 DNNEIYEKAVKILETYWLEEDDETIAAGDGPQPGFPYAGNEVQVPSGGFNFS 532
           DNNEIYEKAVKILETYWLEE+DET+ +GDG QPGF + GN+V VPSGGFNFS
Sbjct: 478 DNNEIYEKAVKILETYWLEEEDETLPSGDGSQPGFQFGGNDVSVPSGGFNFS 529

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564581|ref|XP_003550530.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  958 bits (2477), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/532 (87%), Positives = 499/532 (93%), Gaps = 2/532 (0%)

Query: 1   MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPP 60
           MSLRPNAR E+RRNRYKVAVDADEGRRRREDNMVEIRK+KREESLLKKRREGLQ+QQ   
Sbjct: 1   MSLRPNARTEIRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLLKKRREGLQAQQ-QF 59

Query: 61  PAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 120
           PAP  N  +  KLESLPAMVAGVWSDD+S+QLEATTQFRKLLSIERSPPIEEVIQ+GVVP
Sbjct: 60  PAPLQNSTVDKKLESLPAMVAGVWSDDNSIQLEATTQFRKLLSIERSPPIEEVIQAGVVP 119

Query: 121 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQA 180
           RFVEFL+RED+PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL+SPSDDVREQA
Sbjct: 120 RFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQA 179

Query: 181 VWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD 240
           VWALGNVAGDSPRCRDLVLSQGAL+PLLAQLNE AKLSMLRNATWTLSNFCRGKPQPPF+
Sbjct: 180 VWALGNVAGDSPRCRDLVLSQGALVPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFE 239

Query: 241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP 300
           QVRPALPAL +LV SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVC RLV+LL HPSP
Sbjct: 240 QVRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCARLVQLLIHPSP 299

Query: 301 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360
           SVLIPALRTVGNIVTGDD QTQCII +GALP LL LLT++HKKSIKKEACWTISNITAGN
Sbjct: 300 SVLIPALRTVGNIVTGDDMQTQCIINHGALPCLLNLLTNNHKKSIKKEACWTISNITAGN 359

Query: 361 RDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLC 420
           ++QIQ VI+AGLV PLVNLLQNAEFDIKKEAAWAISNATSGG HEQIKYLV +GCIKPLC
Sbjct: 360 KEQIQTVIEAGLVAPLVNLLQNAEFDIKKEAAWAISNATSGGIHEQIKYLVSQGCIKPLC 419

Query: 421 DLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSH 480
           DL VCPDPRIVTVCLEGLENILKVGEAEK++G  T DVN+YAQ++++AEGLEKIENLQSH
Sbjct: 420 DLLVCPDPRIVTVCLEGLENILKVGEAEKSLGN-TGDVNEYAQMIDDAEGLEKIENLQSH 478

Query: 481 DNNEIYEKAVKILETYWLEEDDETIAAGDGPQPGFPYAGNEVQVPSGGFNFS 532
           DNNEIYEKAVKILETYWLEE+DET+ +GDG QPGF +  NE+ VPSGGFNFS
Sbjct: 479 DNNEIYEKAVKILETYWLEEEDETLPSGDGAQPGFNFGNNELPVPSGGFNFS 530

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529274|ref|XP_003533220.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  958 bits (2476), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/533 (87%), Positives = 499/533 (93%), Gaps = 3/533 (0%)

Query: 1   MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQ-FP 59
           MSLRPNAR EVRRNRYKVAVDADEGRRRREDNMVEIRK+KREESL KKRREGLQ+QQ FP
Sbjct: 1   MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLQKKRREGLQAQQQFP 60

Query: 60  PPAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVV 119
            P  A+++ ++ KLESLPAMVAGVWSDD+S QLEATTQFRKLLSIERSPPIEEVIQ+GVV
Sbjct: 61  TPLQAASI-VEKKLESLPAMVAGVWSDDNSQQLEATTQFRKLLSIERSPPIEEVIQAGVV 119

Query: 120 PRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQ 179
           PRFVEFL+RED+PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL+SPSDDVREQ
Sbjct: 120 PRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQ 179

Query: 180 AVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF 239
           AVWALGNVAGDSP+CRDLVLS GALIPLLAQLNE AKLSMLRNATWTLSNFCRGKPQPPF
Sbjct: 180 AVWALGNVAGDSPKCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPF 239

Query: 240 DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS 299
           +QVR ALPAL +LV SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV+LL HPS
Sbjct: 240 EQVRAALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVQLLLHPS 299

Query: 300 PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG 359
           PSVLIPALRTVGNIVTGDD QTQ II +GALP LL LLTH+HKKSIKKEACWTISNITAG
Sbjct: 300 PSVLIPALRTVGNIVTGDDMQTQTIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAG 359

Query: 360 NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPL 419
           NRDQIQAV++AGL+ PLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLV +GCIKPL
Sbjct: 360 NRDQIQAVVEAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPL 419

Query: 420 CDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQS 479
           CDL VCPDPRIVTVCLEGLENILKVGEAEK+MG  + DVN YAQ+++EAEGLEKIENLQS
Sbjct: 420 CDLLVCPDPRIVTVCLEGLENILKVGEAEKSMGN-SGDVNLYAQMIDEAEGLEKIENLQS 478

Query: 480 HDNNEIYEKAVKILETYWLEEDDETIAAGDGPQPGFPYAGNEVQVPSGGFNFS 532
           HDNNEIYEKAVKILETYWLE+DDET+  GDG QPGF +  N+V VPSGGFNFS
Sbjct: 479 HDNNEIYEKAVKILETYWLEDDDETLPTGDGAQPGFNFGNNDVPVPSGGFNFS 531

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110258|ref|XP_002315463.1| predicted protein [Populus trichocarpa] gi|222864503|gb|EEF01634.1| predicted protein [Populus trichocarpa]

 Score =  954 bits (2467), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/531 (87%), Positives = 498/531 (93%), Gaps = 2/531 (0%)

Query: 1   MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPP 60
           MSLRP+AR EVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQ+QQFPP
Sbjct: 1   MSLRPSARTEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQAQQFPP 60

Query: 61  PAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 120
            A  S+ N++ KLE+LP+MVAGVWS+D +LQLE+TTQFRKLLSIERSPPIEEVIQ+GVVP
Sbjct: 61  -AILSSSNVEKKLENLPSMVAGVWSEDGNLQLESTTQFRKLLSIERSPPIEEVIQAGVVP 119

Query: 121 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQA 180
           RFVEFL+RED+PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL SPSDDVREQA
Sbjct: 120 RFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQA 179

Query: 181 VWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD 240
           VWALGNVAGDSP+CRDLVLS GALIPLLAQLNE AKLSMLRNATWTLSNFCRGKPQPPF+
Sbjct: 180 VWALGNVAGDSPKCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFE 239

Query: 241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP 300
           QVRPALPAL +LVHS DEEVLTD+CWALSYLSDGT+DKIQAVIEAGVCPRLVELL HPSP
Sbjct: 240 QVRPALPALERLVHSTDEEVLTDSCWALSYLSDGTDDKIQAVIEAGVCPRLVELLLHPSP 299

Query: 301 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360
           SVL+PALRTVGNIVTGDD QTQCIIT GALP LL LLTH+HKKSIKKEACWTISNITAGN
Sbjct: 300 SVLVPALRTVGNIVTGDDMQTQCIITTGALPCLLSLLTHNHKKSIKKEACWTISNITAGN 359

Query: 361 RDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLC 420
           ++QIQAVI+ GL+GPLVNLLQNAEFDIKKEAAWA+SNATSGGTHEQIK+LV +GCIKPLC
Sbjct: 360 KEQIQAVIENGLIGPLVNLLQNAEFDIKKEAAWAVSNATSGGTHEQIKFLVSQGCIKPLC 419

Query: 421 DLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSH 480
           DL V PDPRIVTV LEGLENILKVGEAEKN+G  + D N YAQ++++AEGLEKIENLQSH
Sbjct: 420 DLLVSPDPRIVTVSLEGLENILKVGEAEKNLGN-SGDANFYAQMIDDAEGLEKIENLQSH 478

Query: 481 DNNEIYEKAVKILETYWLEEDDETIAAGDGPQPGFPYAGNEVQVPSGGFNF 531
           DNNEIYEKAVKILETYWLEEDDET+ +GDG Q GF + GN VQVPSGGFNF
Sbjct: 479 DNNEIYEKAVKILETYWLEEDDETLPSGDGAQQGFQFGGNGVQVPSGGFNF 529

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130302|ref|XP_002328576.1| predicted protein [Populus trichocarpa] gi|222838558|gb|EEE76923.1| predicted protein [Populus trichocarpa]

 Score =  950 bits (2456), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/531 (86%), Positives = 494/531 (93%), Gaps = 2/531 (0%)

Query: 1   MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPP 60
           MSLRP+ R +VRRNRYKVAVDADEGRRRREDNMVEIRKNKREESL KKRREGL +QQFP 
Sbjct: 1   MSLRPSTRTDVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLLAQQFPA 60

Query: 61  PAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 120
            A  S+ N++ KLESLP+MV+GVWSDDS+LQLEATTQFRKLLSIERSPPIEEVIQ+GVVP
Sbjct: 61  -AVLSSSNMEKKLESLPSMVSGVWSDDSNLQLEATTQFRKLLSIERSPPIEEVIQAGVVP 119

Query: 121 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQA 180
           RFVE L+RED+PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL SPSDDVREQA
Sbjct: 120 RFVELLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQA 179

Query: 181 VWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD 240
           VWALGNVAGDSP+CRDLVLS GALIPLLAQLNE AKLSMLRNATWTLSNFCRGKPQP F+
Sbjct: 180 VWALGNVAGDSPKCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPLFE 239

Query: 241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP 300
           +VRPALPAL +LVHS DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSP
Sbjct: 240 KVRPALPALERLVHSTDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSP 299

Query: 301 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360
           SVL+PALRTVGNIVTGDD QTQCII  GALP LL LLTH+HKKSIKKEACWTISNITAGN
Sbjct: 300 SVLVPALRTVGNIVTGDDMQTQCIINTGALPCLLSLLTHNHKKSIKKEACWTISNITAGN 359

Query: 361 RDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLC 420
           ++QIQAVI+AGL+GPLVNLLQNAEFDIKKEAAWA+SNATSGGTHEQIK+LV +GCIKPLC
Sbjct: 360 KEQIQAVIEAGLIGPLVNLLQNAEFDIKKEAAWAVSNATSGGTHEQIKFLVSQGCIKPLC 419

Query: 421 DLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSH 480
           DL VCPDPRIVTVCLEGLENILKVGEAEKN+G  + DVN YAQ++++AEGLEKIENLQSH
Sbjct: 420 DLLVCPDPRIVTVCLEGLENILKVGEAEKNLGN-SGDVNFYAQMIDDAEGLEKIENLQSH 478

Query: 481 DNNEIYEKAVKILETYWLEEDDETIAAGDGPQPGFPYAGNEVQVPSGGFNF 531
           DNNEIYEKAVKILETYWLEEDDE + +GDG Q GF +  N VQVPSGGFNF
Sbjct: 479 DNNEIYEKAVKILETYWLEEDDEALPSGDGAQQGFHFGENNVQVPSGGFNF 529

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521809|ref|XP_003529543.1| PREDICTED: LOW QUALITY PROTEIN: importin subunit alpha-1-like [Glycine max]

 Score =  946 bits (2446), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/532 (86%), Positives = 495/532 (93%), Gaps = 2/532 (0%)

Query: 1   MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPP 60
           MSLRPNAR EVRRNRYKVAVDADEGRRRREDNMV IRK+KREESLLKKRREGLQ+ Q   
Sbjct: 1   MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMVXIRKSKREESLLKKRREGLQAHQ-QL 59

Query: 61  PAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 120
           PAP  N  +   LESLPAMVAGVWS+D+SLQLEATTQFRKLLSIERSPPIEEVIQ+GVVP
Sbjct: 60  PAPLQNSTVDKNLESLPAMVAGVWSNDNSLQLEATTQFRKLLSIERSPPIEEVIQAGVVP 119

Query: 121 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQA 180
           RFVEFL+RED+PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL+SPSDDVREQA
Sbjct: 120 RFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQA 179

Query: 181 VWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD 240
           VWALGNVAGDSPRCRDLVLS GAL+PLLAQLNE AKLSMLRNATWTLSNFCRGKPQPPF+
Sbjct: 180 VWALGNVAGDSPRCRDLVLSHGALVPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFE 239

Query: 241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP 300
           QVRPALPAL +LV SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL++LL HPSP
Sbjct: 240 QVRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLMQLLMHPSP 299

Query: 301 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360
           SVLIPALRTVGNIVTGDD QTQCII +GALP LL LLT++HKKSIKKEACWTISNITAGN
Sbjct: 300 SVLIPALRTVGNIVTGDDMQTQCIINHGALPCLLNLLTNNHKKSIKKEACWTISNITAGN 359

Query: 361 RDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLC 420
           ++QIQ VI+AGLV PLVNLLQ+AEFDIKKEA+WAISNATSGGTH+QIKYLV +GC+KPLC
Sbjct: 360 KEQIQTVIEAGLVAPLVNLLQSAEFDIKKEASWAISNATSGGTHDQIKYLVSQGCVKPLC 419

Query: 421 DLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSH 480
           DL VCPDPRIVTVCLEGLENILKVGEAEK++G  T DVN YAQ+++EAEGLEKIENLQSH
Sbjct: 420 DLLVCPDPRIVTVCLEGLENILKVGEAEKSLGN-TGDVNVYAQMIDEAEGLEKIENLQSH 478

Query: 481 DNNEIYEKAVKILETYWLEEDDETIAAGDGPQPGFPYAGNEVQVPSGGFNFS 532
           DNNEIYEK VKILETYWLEE+DET+ +G+G QPGF +  NE+ VPSGGFNFS
Sbjct: 479 DNNEIYEKVVKILETYWLEEEDETLPSGNGAQPGFNFGNNELPVPSGGFNFS 530

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|119866037|gb|ABM05488.1| Impa2 [Nicotiana benthamiana]

 Score =  941 bits (2431), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/531 (86%), Positives = 488/531 (91%), Gaps = 3/531 (0%)

Query: 1   MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPP 60
           MSLRP+AR EVRRNRYKVAVDA+EGRRRREDNMVEIRK+KREESLLKKRREGLQ QQ P 
Sbjct: 1   MSLRPSARTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLLKKRREGLQPQQQPF 60

Query: 61  PAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 120
           PA      ++ KLESLP+MVAGVWS+D++LQLEATTQFRKLLSIERSPPIEEVIQSGVVP
Sbjct: 61  PANLHTSTVEKKLESLPSMVAGVWSNDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 120

Query: 121 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQA 180
           RFVEFLMRED+PQLQFEAAWALTNIASGTS+NT+VVIDHGAVPIFVKLL SPSDDVREQA
Sbjct: 121 RFVEFLMREDFPQLQFEAAWALTNIASGTSDNTRVVIDHGAVPIFVKLLGSPSDDVREQA 180

Query: 181 VWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD 240
           VWALGNVAGDSPRCRDLVLS GALIPLLAQLNE  KLSMLRNATWTLSNFCRGKPQPPF+
Sbjct: 181 VWALGNVAGDSPRCRDLVLSNGALIPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPPFE 240

Query: 241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP 300
           QVRPAL AL +LVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSP
Sbjct: 241 QVRPALSALQRLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLMHPSP 300

Query: 301 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360
           SVLIPALRTVGNIVTGDD QTQCII +GAL  LL LLTH+HKKSIKKEACWTISNITAGN
Sbjct: 301 SVLIPALRTVGNIVTGDDLQTQCIIEHGALTCLLSLLTHNHKKSIKKEACWTISNITAGN 360

Query: 361 RDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLC 420
           ++QIQAVI+AGL+ PLVNLLQ AEFDIKKEAAWAISNATSGGTHEQIK+LV +GCIKPLC
Sbjct: 361 KEQIQAVIEAGLIAPLVNLLQTAEFDIKKEAAWAISNATSGGTHEQIKFLVSQGCIKPLC 420

Query: 421 DLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSH 480
           DL VCPDPRIVTVCLEGLENILKVGEAEK     T  +N YAQL ++AEGLEKIENLQSH
Sbjct: 421 DLLVCPDPRIVTVCLEGLENILKVGEAEK---ANTGGINYYAQLTDDAEGLEKIENLQSH 477

Query: 481 DNNEIYEKAVKILETYWLEEDDETIAAGDGPQPGFPYAGNEVQVPSGGFNF 531
           DNNEIYEKAVKILETYWLEE+DET+ AGD  Q GF + GN++Q+PSGGF F
Sbjct: 478 DNNEIYEKAVKILETYWLEEEDETLPAGDEAQAGFNFGGNDIQLPSGGFKF 528

Source: Nicotiana benthamiana

Species: Nicotiana benthamiana

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13752562|gb|AAK38727.1|AF369707_1 importin alpha 2 [Capsicum annuum]

 Score =  931 bits (2405), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/531 (85%), Positives = 485/531 (91%), Gaps = 3/531 (0%)

Query: 1   MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPP 60
           MSLRP+AR EVRRNRYKVAVDA+EGRRRREDNMVEIRK+KREESLLKKRREGLQ+QQ   
Sbjct: 1   MSLRPSARTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLLKKRREGLQAQQQQF 60

Query: 61  PAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 120
           P+      ++ KL SLP+MVAGVWS D++LQLEA TQFRKLLSIERSPPIEEVIQSGVVP
Sbjct: 61  PSNLQTSTVEKKLASLPSMVAGVWSTDNNLQLEANTQFRKLLSIERSPPIEEVIQSGVVP 120

Query: 121 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQA 180
           RFVEFL+RED+PQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFVKLL SPSDDVREQA
Sbjct: 121 RFVEFLLREDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVKLLGSPSDDVREQA 180

Query: 181 VWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD 240
           VWALGNVAGDSPRCRDLVLS GALIPLLAQLNE AKLSMLRNATWTLSNFCRGKPQPPF+
Sbjct: 181 VWALGNVAGDSPRCRDLVLSNGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFE 240

Query: 241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP 300
           QVRPAL AL +LVHS DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSP
Sbjct: 241 QVRPALSALQRLVHSTDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLVHPSP 300

Query: 301 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360
           SVLIPALRTVGNIVTGDD QTQCII +GALP LL LLTH+HKKSIKKEACWTISNITAGN
Sbjct: 301 SVLIPALRTVGNIVTGDDLQTQCIIEHGALPCLLSLLTHNHKKSIKKEACWTISNITAGN 360

Query: 361 RDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLC 420
           ++QIQAVI AGL+ PLVNLLQ+AEFDIKKEAAWAISNATSGGTHEQIK+LV + CIKPLC
Sbjct: 361 KEQIQAVIAAGLISPLVNLLQSAEFDIKKEAAWAISNATSGGTHEQIKFLVSQNCIKPLC 420

Query: 421 DLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSH 480
           DL VCPDPRIVTVCLEGLENILKVGEAEK     T  +N YAQL ++AEGLEKIENLQSH
Sbjct: 421 DLLVCPDPRIVTVCLEGLENILKVGEAEK---ANTGGINYYAQLTDDAEGLEKIENLQSH 477

Query: 481 DNNEIYEKAVKILETYWLEEDDETIAAGDGPQPGFPYAGNEVQVPSGGFNF 531
           DNNEIYEKAVKILETYWLEE+DET+ AGDG Q  F + GN++Q+PSGGF F
Sbjct: 478 DNNEIYEKAVKILETYWLEEEDETLPAGDGTQNEFNFGGNDIQLPSGGFKF 528

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464730|ref|XP_004150082.1| PREDICTED: importin subunit alpha-1-like [Cucumis sativus] gi|449501502|ref|XP_004161385.1| PREDICTED: importin subunit alpha-1-like [Cucumis sativus]

 Score =  930 bits (2403), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/533 (85%), Positives = 490/533 (91%), Gaps = 4/533 (0%)

Query: 1   MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPP 60
           MSLRP AR EVRRNRYKV+VDA+EGRRRREDNMVEIRK+KREESL KKRREGLQ+QQFP 
Sbjct: 1   MSLRPTARTEVRRNRYKVSVDAEEGRRRREDNMVEIRKSKREESLQKKRREGLQAQQFPS 60

Query: 61  PAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 120
               S +  + KLESLP+MVAGVWSD+SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVP
Sbjct: 61  AVHTSTV--EKKLESLPSMVAGVWSDNSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 118

Query: 121 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQA 180
           RFVEFL+RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGAVPIFVKLLASPSDDVREQA
Sbjct: 119 RFVEFLVREDFPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLASPSDDVREQA 178

Query: 181 VWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD 240
           VWALGNVAGDSP CRDLVL  GALIPLL+QLNE AKLSMLRNATWTLSNFCRGKPQPPFD
Sbjct: 179 VWALGNVAGDSPTCRDLVLRHGALIPLLSQLNEHAKLSMLRNATWTLSNFCRGKPQPPFD 238

Query: 241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP 300
           QV+PALPAL +LVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVC RLV+LL HPSP
Sbjct: 239 QVKPALPALERLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCGRLVQLLLHPSP 298

Query: 301 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360
           SVLIPALRTVGNIVTGDD QTQ I+  GAL  LLG+ T +HKKSIKKEACWTISNITAGN
Sbjct: 299 SVLIPALRTVGNIVTGDDIQTQWIVNDGALSCLLGIFTQNHKKSIKKEACWTISNITAGN 358

Query: 361 RDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLC 420
           ++QIQAVI+A L+ PLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLV +GCIKPLC
Sbjct: 359 KEQIQAVIEARLIPPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLC 418

Query: 421 DLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSH 480
           DL VCPDPRIVTVCLEGLENILKVGEAEKN+GT   DVN YAQ++++AEGLEKIENLQSH
Sbjct: 419 DLLVCPDPRIVTVCLEGLENILKVGEAEKNLGT-NGDVNLYAQMIDDAEGLEKIENLQSH 477

Query: 481 DNNEIYEKAVKILETYWLEEDDETIAAGD-GPQPGFPYAGNEVQVPSGGFNFS 532
           DN+EIYEKAVKILETYWLEE+DE + A D G QPGF + GNE+ VPSGGFNFS
Sbjct: 478 DNHEIYEKAVKILETYWLEEEDEALPATDGGAQPGFRFGGNELPVPSGGFNFS 530

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	532
TAIR|locus:505006475	535	IMPA-2 "importin alpha isoform	0.996	0.990	0.828	1.6e-235
TAIR|locus:2083313	532	IMPA-1 "importin alpha isoform	0.994	0.994	0.813	2.8e-231
TAIR|locus:2195351	538	IMPA-4 "AT1G09270" [Arabidopsi	0.996	0.985	0.740	1.9e-211
TAIR|locus:2132238	531	MOS6 "MODIFIER OF SNC1, 6" [Ar	0.992	0.994	0.709	2.2e-201
TAIR|locus:2196140	539	IMPA-6 "importin alpha isoform	0.996	0.983	0.701	1.5e-200
TAIR|locus:2155929	519	IMPA-5 "importin alpha isoform	0.956	0.980	0.646	1.8e-172
TAIR|locus:2078122	528	IMPA-7 "importin alpha isoform	0.902	0.909	0.646	2e-159
ASPGD|ASPL0000045550	553	kapA [Emericella nidulans (tax	0.968	0.931	0.599	1.8e-156
DICTYBASE|DDB_G0272318	516	DDB_G0272318 "putative importi	0.915	0.943	0.603	4.4e-155
UNIPROTKB|G4MZS0	551	MGG_15072 "Importin subunit al	0.962	0.929	0.589	1.1e-151

TAIR|locus:505006475 IMPA-2 "importin alpha isoform 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 2271 (804.5 bits), Expect = 1.6e-235, P = 1.6e-235
 Identities = 443/535 (82%), Positives = 480/535 (89%)

Query:     1 MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQ--- 57
             MSLRPNA+ EVRRNRYKVAVDA+EGRRRREDNMVEIRK+KREESL KKRREGLQ+ Q   
Sbjct:     1 MSLRPNAKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLQKKRREGLQANQLPQ 60

Query:    58 FXXXXXXSNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSG 117
             F      ++  ++ KLESLPAMV GVWSDD SLQLEATTQFRKLLSIERSPPIEEVI +G
Sbjct:    61 FAPSPVPASSTVEKKLESLPAMVGGVWSDDRSLQLEATTQFRKLLSIERSPPIEEVIDAG 120

Query:   118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVR 177
             VVPRFVEFL REDYPQLQFEAAWALTNIASGTSENTKVVI+HGAVPIFV+LLAS SDDVR
Sbjct:   121 VVPRFVEFLTREDYPQLQFEAAWALTNIASGTSENTKVVIEHGAVPIFVQLLASQSDDVR 180

Query:   178 EQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP 237
             EQAVWALGNVAGDSPRCRDLVL QGALIPLL+QLNE AKLSMLRNATWTLSNFCRGKPQP
Sbjct:   181 EQAVWALGNVAGDSPRCRDLVLGQGALIPLLSQLNEHAKLSMLRNATWTLSNFCRGKPQP 240

Query:   238 PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH 297
             PFDQVRPALPAL +L+HS DEEVLTDACWALSYLSDGTNDKIQ+VIEAGV PRLVELL H
Sbjct:   241 PFDQVRPALPALERLIHSTDEEVLTDACWALSYLSDGTNDKIQSVIEAGVVPRLVELLQH 300

Query:   298 PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT 357
              SPSVLIPALR++GNIVTGDD QTQC+I++GAL  LL LLTH+HKKSIKKEACWTISNIT
Sbjct:   301 QSPSVLIPALRSIGNIVTGDDLQTQCVISHGALLSLLSLLTHNHKKSIKKEACWTISNIT 360

Query:   358 AGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIK 417
             AGNRDQIQAV +AGL+ PLVNLLQNAEFDIKKEAAWAISNATSGG+ +QIKY+V +G +K
Sbjct:   361 AGNRDQIQAVCEAGLICPLVNLLQNAEFDIKKEAAWAISNATSGGSPDQIKYMVEQGVVK 420

Query:   418 PLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENL 477
             PLCDL VCPDPRI+TVCLEGLENILKVGEAEK  G  T DVN YAQL+++AEGLEKIENL
Sbjct:   421 PLCDLLVCPDPRIITVCLEGLENILKVGEAEKVTGN-TGDVNFYAQLIDDAEGLEKIENL 479

Query:   478 QSHDNNEIYEKAVKILETYWLEEDDETIAAGDGPQPGFPYAG-NEVQVPSGGFNF 531
             QSHDN+EIYEKAVKILETYWLEE+DET+  GD    GF + G N+  VP GGFNF
Sbjct:   480 QSHDNSEIYEKAVKILETYWLEEEDETLPPGDPSAQGFQFGGGNDAAVPPGGFNF 534

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA;ISS

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2083313 IMPA-1 "importin alpha isoform 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 2231 (790.4 bits), Expect = 2.8e-231, P = 2.8e-231
 Identities = 435/535 (81%), Positives = 477/535 (89%)

Query:     1 MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFXX 60
             MSLRPNA+ EVRRNRYKVAVDA+EGRRRREDNMVEIRK+KREESL+KKRREG+Q+ Q   
Sbjct:     1 MSLRPNAKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLMKKRREGMQALQ--G 58

Query:    61 XXXXSNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 120
                 S  ++  KL+SL  MVAGVWSDD +LQLE+TTQFRKLLSIERSPPIEEVI +GVVP
Sbjct:    59 FPSASAASVDKKLDSLKDMVAGVWSDDPALQLESTTQFRKLLSIERSPPIEEVISAGVVP 118

Query:   121 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQA 180
             RFVEFL +EDYP +QFEAAWALTNIASGTS++TKVVIDH AVPIFV+LLASPSDDVREQA
Sbjct:   119 RFVEFLKKEDYPAIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQLLASPSDDVREQA 178

Query:   181 VWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD 240
             VWALGNVAGDSPRCRDLVL  GAL+PLL QLNE AKLSMLRNATWTLSNFCRGKPQP FD
Sbjct:   179 VWALGNVAGDSPRCRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCRGKPQPHFD 238

Query:   241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP 300
             QV+PALPAL +L+HS+DEEVLTDACWALSYLSDGTNDKIQ VI+AGV P+LVELL H SP
Sbjct:   239 QVKPALPALERLIHSDDEEVLTDACWALSYLSDGTNDKIQTVIQAGVVPKLVELLLHHSP 298

Query:   301 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360
             SVLIPALRTVGNIVTGDD QTQC+I  GALP L  LLT +HKKSIKKEACWTISNITAGN
Sbjct:   299 SVLIPALRTVGNIVTGDDIQTQCVINSGALPCLANLLTQNHKKSIKKEACWTISNITAGN 358

Query:   361 RDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLC 420
             +DQIQ V++A L+ PLV+LLQNAEFDIKKEAAWAISNATSGG+H+QIKYLV +GCIKPLC
Sbjct:   359 KDQIQTVVEANLISPLVSLLQNAEFDIKKEAAWAISNATSGGSHDQIKYLVEQGCIKPLC 418

Query:   421 DLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSH 480
             DL VCPDPRI+TVCLEGLENILKVGEAEKN+G  T D+N YAQL+++AEGLEKIENLQSH
Sbjct:   419 DLLVCPDPRIITVCLEGLENILKVGEAEKNLGH-TGDMNYYAQLIDDAEGLEKIENLQSH 477

Query:   481 DNNEIYEKAVKILETYWLEE-DDETIAA-G-DGPQPGFPYAGNEVQVPSGGFNFS 532
             DNNEIYEKAVKILETYWLEE DDET    G DG Q GF + GN+  VPSGGFNFS
Sbjct:   478 DNNEIYEKAVKILETYWLEEEDDETQQPPGVDGSQAGFQFGGNQAPVPSGGFNFS 532

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2195351 IMPA-4 "AT1G09270" [Arabidopsis thaliana (taxid:3702)]

 Score = 2044 (724.6 bits), Expect = 1.9e-211, P = 1.9e-211
 Identities = 400/540 (74%), Positives = 454/540 (84%)

Query:     1 MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFXX 60
             MSLRP+ RAE+R+  YK  VDADE RRRREDN+VEIRKNKRE+SLLKKRREG+  QQ   
Sbjct:     1 MSLRPSTRAELRKKIYKTGVDADEARRRREDNLVEIRKNKREDSLLKKRREGMMLQQQLP 60

Query:    61 XXXXSN-----LNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQ 115
                  +       ++ +LE +P MV GV+SDD   QLEATTQFRKLLSIERSPPI+EVI+
Sbjct:    61 LGAGLDGPQTAAAVEKRLEGIPMMVQGVYSDDPQAQLEATTQFRKLLSIERSPPIDEVIK 120

Query:   116 SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDD 175
             +GV+PRFVEFL R D+PQLQFEAAWALTN+ASGTS++T+VVI+ GAVPIFVKLL S SDD
Sbjct:   121 AGVIPRFVEFLGRHDHPQLQFEAAWALTNVASGTSDHTRVVIEQGAVPIFVKLLTSASDD 180

Query:   176 VREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP 235
             VREQAVWALGNVAGDSP CR+LVL+ GAL PLLAQLNE +KLSMLRNATWTLSNFCRGKP
Sbjct:   181 VREQAVWALGNVAGDSPNCRNLVLNYGALEPLLAQLNENSKLSMLRNATWTLSNFCRGKP 240

Query:   236 QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 295
               PF+QV+PALP L QL++ NDEEVLTDACWALSYLSDG NDKIQAVIEAGVCPRLVELL
Sbjct:   241 PTPFEQVKPALPILRQLIYLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELL 300

Query:   296 GHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN 355
             GH SP+VLIPALRTVGNIVTGDD QTQ II  G LP+L  LLT +HKKSIKKEACWTISN
Sbjct:   301 GHQSPTVLIPALRTVGNIVTGDDSQTQFIIESGVLPHLYNLLTQNHKKSIKKEACWTISN 360

Query:   356 ITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGC 415
             ITAGN+ QI+AV+ AG++ PLV+LLQNAEFDIKKEAAWAISNATSGG+HEQI+YLV +GC
Sbjct:   361 ITAGNKLQIEAVVGAGIILPLVHLLQNAEFDIKKEAAWAISNATSGGSHEQIQYLVTQGC 420

Query:   416 IKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIE 475
             IKPLCDL +CPDPRIVTVCLEGLENILKVGEA+K MG   + VN YAQ++EE++GL+K+E
Sbjct:   421 IKPLCDLLICPDPRIVTVCLEGLENILKVGEADKEMGL-NSGVNLYAQIIEESDGLDKVE 479

Query:   476 NLQSHDNNEIYEKAVKILETYWLEEDDETI---AAGDGPQPGFPYAGNEVQVPSGGFNFS 532
             NLQSHDNNEIYEKAVKILE YW EE++E I      D  Q  F + GN    P GGF F+
Sbjct:   480 NLQSHDNNEIYEKAVKILERYWAEEEEEQILQDGGNDNSQQAFNF-GNNPAAPVGGFKFA 538

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS;RCA

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0030581 "symbiont intracellular protein transport in host" evidence=IPI

GO:0080034 "host response to induction by symbiont of tumor, nodule or growth in host" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2132238 MOS6 "MODIFIER OF SNC1, 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1949 (691.1 bits), Expect = 2.2e-201, P = 2.2e-201
 Identities = 378/533 (70%), Positives = 444/533 (83%)

Query:     1 MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFXX 60
             MSLRP+A+ EVRRNRYKVAVDA+EGRRRREDN+VEIRKNKREE+L KKR     +     
Sbjct:     1 MSLRPSAKTEVRRNRYKVAVDAEEGRRRREDNLVEIRKNKREENLQKKRFTSSMAFGSAT 60

Query:    61 XXXXSNLNLQTKL-ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVV 119
                  +L+   +L ++LPAMVAG+WS+DS+ QLEAT   RKLLSIE++PPI EV+QSGVV
Sbjct:    61 GQTEQDLSSANQLKDNLPAMVAGIWSEDSNSQLEATNLLRKLLSIEQNPPINEVVQSGVV 120

Query:   120 PRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQ 179
             PR V+FL R+D+P+LQFEAAWALTNIASGTSENT V+I+ GAVPIF++LL+S S+DVREQ
Sbjct:   121 PRVVKFLSRDDFPKLQFEAAWALTNIASGTSENTNVIIESGAVPIFIQLLSSASEDVREQ 180

Query:   180 AVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF 239
             AVWALGNVAGDSP+CRDLVLS GA+ PLL+Q NE  KLSMLRNATWTLSNFCRGKP P F
Sbjct:   181 AVWALGNVAGDSPKCRDLVLSYGAMTPLLSQFNENTKLSMLRNATWTLSNFCRGKPPPAF 240

Query:   240 DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS 299
             +Q +PALP L +LV S DEEVLTDACWALSYLSD +NDKIQAVIEAGV PRL++LLGH S
Sbjct:   241 EQTQPALPVLERLVQSMDEEVLTDACWALSYLSDNSNDKIQAVIEAGVVPRLIQLLGHSS 300

Query:   300 PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG 359
             PSVLIPALRT+GNIVTGDD QTQ ++   ALP LL LL +++KKSIKKEACWTISNITAG
Sbjct:   301 PSVLIPALRTIGNIVTGDDLQTQMVLDQQALPCLLNLLKNNYKKSIKKEACWTISNITAG 360

Query:   360 NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPL 419
             N DQIQAVIDAG++  LV +LQ+AEF++KKEAAW ISNATSGGTH+QIK++V +GCIKPL
Sbjct:   361 NADQIQAVIDAGIIQSLVWVLQSAEFEVKKEAAWGISNATSGGTHDQIKFMVSQGCIKPL 420

Query:   420 CDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQS 479
             CDL  CPD ++VTVCLE LENIL VGEAEKN+G  T + N YAQ+++EAEGLEKIENLQS
Sbjct:   421 CDLLTCPDLKVVTVCLEALENILVVGEAEKNLGH-TGEDNLYAQMIDEAEGLEKIENLQS 479

Query:   480 HDNNEIYEKAVKILETYWLEEDDET-IAAGDGPQPGFPYAGNEVQVPSGGFNF 531
             HDNN+IY+KAVKILET+W E+++E        PQ GF +    V  P G FNF
Sbjct:   480 HDNNDIYDKAVKILETFWTEDNEEEGNDENHAPQSGFQFGSTNV--PPGQFNF 530

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0006952 "defense response" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2196140 IMPA-6 "importin alpha isoform 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1941 (688.3 bits), Expect = 1.5e-200, P = 1.5e-200
 Identities = 378/539 (70%), Positives = 443/539 (82%)

Query:     1 MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFXX 60
             MS +P+A+ EVRRNRYKV+VDADEGRRRREDNMVEIRKNKREE+L KKRREG        
Sbjct:     1 MSYKPSAKTEVRRNRYKVSVDADEGRRRREDNMVEIRKNKREENLQKKRREGFNPSMASQ 60

Query:    61 --XXXXSNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGV 118
                   S+L  +T+LE++  M+AGV S+D  LQLEAT  FR+LLSIER+PPI EV+QSGV
Sbjct:    61 PGQDFSSSLPTETRLENIQQMIAGVMSEDRDLQLEATASFRRLLSIERNPPINEVVQSGV 120

Query:   119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVRE 178
             VP  V+FL R+D+ QLQFEAAWALTNIASGTSENT+V+ID GAVP+FVKLL+S S++VRE
Sbjct:   121 VPHIVQFLSRDDFTQLQFEAAWALTNIASGTSENTRVIIDSGAVPLFVKLLSSASEEVRE 180

Query:   179 QAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP 238
             QAVWALGNVAGDSP+CRD VLS  A++ LLAQ +E +KLSMLRNATWTLSNFCRGKPQP 
Sbjct:   181 QAVWALGNVAGDSPKCRDHVLSCEAMMSLLAQFHEHSKLSMLRNATWTLSNFCRGKPQPA 240

Query:   239 FDQ-VRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH 297
             F+Q  + ALPAL +L+HS DEEVLTDA WALSYLSDGTN+KIQ VI+AGV PRLV+LL H
Sbjct:   241 FEQQTKAALPALERLLHSTDEEVLTDASWALSYLSDGTNEKIQTVIDAGVIPRLVQLLAH 300

Query:   298 PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT 357
             PSPSVLIPALRT+GNIVTGDD QTQ +I+  ALP LL LL +++KKSIKKEACWTISNIT
Sbjct:   301 PSPSVLIPALRTIGNIVTGDDIQTQAVISSQALPGLLNLLKNTYKKSIKKEACWTISNIT 360

Query:   358 AGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIK 417
             AGN  QIQ V  AG++ PL+NLL+  EF+IKKEA WAISNATSGG H+QIK+LV +GCI+
Sbjct:   361 AGNTSQIQEVFQAGIIRPLINLLEIGEFEIKKEAVWAISNATSGGNHDQIKFLVSQGCIR 420

Query:   418 PLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENL 477
             PLCDL  CPDPR+VTV LEGLENILKVGEAEKN+G  T + N YAQ++E+A+GL+KIENL
Sbjct:   421 PLCDLLPCPDPRVVTVTLEGLENILKVGEAEKNLGN-TGNDNLYAQMIEDADGLDKIENL 479

Query:   478 QSHDNNEIYEKAVKILETYWLEEDDETIAAG-DGPQ----PGFPYAGNEVQVPSGGFNF 531
             QSHDNNEIYEKAVKILE+YW  +D+E    G D P+     GF +       P+GGFNF
Sbjct:   480 QSHDNNEIYEKAVKILESYWAADDEEEDIGGVDAPENVQSSGFQFGNQSGNAPTGGFNF 538

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0007067 "mitosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2155929 IMPA-5 "importin alpha isoform 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1676 (595.0 bits), Expect = 1.8e-172, P = 1.8e-172
 Identities = 338/523 (64%), Positives = 404/523 (77%)

Query:     1 MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFXX 60
             MSLRP+ + E+RR RYKV+VDA+EGRRRRED +VEIRK+KR E+L+KKRR  +    +  
Sbjct:     1 MSLRPSTKTEIRRIRYKVSVDAEEGRRRREDFLVEIRKSKRNENLMKKRRVKVLPPDYKL 60

Query:    61 XXXXSNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 120
                 SN   ++ LE +  M+ GV+SDD SLQLE TT+FR +LS +RSPP + VI+SGVVP
Sbjct:    61 I---SNDPFESLLE-IANMITGVFSDDPSLQLEYTTRFRVVLSFDRSPPTDNVIKSGVVP 116

Query:   121 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQA 180
             RFVEFL ++D P+LQFEAAWALTNIASG SE+TKVVIDHG VP+FV+LLASP DDVREQA
Sbjct:   117 RFVEFLKKDDNPKLQFEAAWALTNIASGASEHTKVVIDHGVVPLFVQLLASPDDDVREQA 176

Query:   181 VWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD 240
             +W LGNVAGDS +CRD VL+ GA IPLL QLN  A LS+LRNATWTLSNF RGKP PPFD
Sbjct:   177 IWGLGNVAGDSIQCRDFVLNSGAFIPLLHQLNNHATLSILRNATWTLSNFFRGKPSPPFD 236

Query:   241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP 300
              V+  LP L +LV+S+DE+VL DACWALS LSD +N+ IQ+VIEAGV PRLVELL H SP
Sbjct:   237 LVKHVLPVLKRLVYSDDEQVLIDACWALSNLSDASNENIQSVIEAGVVPRLVELLQHASP 296

Query:   301 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360
              VL+PALR +GNIV+G+  QT C+I  G LP L  LLT +H + I++EACWTISNITAG 
Sbjct:   297 VVLVPALRCIGNIVSGNSQQTHCVINCGVLPVLADLLTQNHMRGIRREACWTISNITAGL 356

Query:   361 RDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLC 420
              +QIQ+VIDA L+  LVNL Q+AEFDIKKEA WAISNA+ GG+  QIKYLV + CIK LC
Sbjct:   357 EEQIQSVIDANLIPSLVNLAQHAEFDIKKEAIWAISNASVGGSPNQIKYLVEQNCIKALC 416

Query:   421 DLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSH 480
             D+ VCPD RI+ V L GLE IL  GE +KN+     DVN Y+Q++E+AEGLEKIENLQ H
Sbjct:   417 DILVCPDLRIILVSLGGLEMILIAGEVDKNL----RDVNCYSQMIEDAEGLEKIENLQHH 472

Query:   481 DNNEIYEKAVKILETYWLEEDD-----ETIAAGDG-PQPGFPY 517
              NNEIYEKAVKIL+TY L E+D     E    GDG   P F +
Sbjct:   473 GNNEIYEKAVKILQTYGLVEEDGRLVEEEDEGGDGCSHPEFQF 515

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2078122 IMPA-7 "importin alpha isoform 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 1553 (551.7 bits), Expect = 2.0e-159, P = 2.0e-159
 Identities = 323/500 (64%), Positives = 378/500 (75%)

Query:    11 VRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFXXXXXXSNLNLQ 70
             VRR+ YK  VD   GRRRRED+MVEIRK KREESLLKKRRE L           S  +L 
Sbjct:     9 VRRSGYKAVVDGVGGRRRREDDMVEIRKAKREESLLKKRREALPHSP-------SADSLD 61

Query:    71 TKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIER-SPPIEEVIQSGVVPRFVEFLMRE 129
              KL      ++ +WSD+  L +EATTQ R LL  E  +  +EEVIQ+G+VPRFVEFL  +
Sbjct:    62 QKL------ISCIWSDERDLLIEATTQIRTLLCGEMFNVRVEEVIQAGLVPRFVEFLTWD 115

Query:   130 DYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAG 189
             D PQLQFEAAWALTNIASGTSENT+VVIDHGAV I V+LL SP D VREQ VWALGN++G
Sbjct:   116 DSPQLQFEAAWALTNIASGTSENTEVVIDHGAVAILVRLLNSPYDVVREQVVWALGNISG 175

Query:   190 DSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPAL 249
             DSPRCRD+VL   AL  LL QLN  AKLSML NA WTLSN CRGKPQPPFDQV  ALPAL
Sbjct:   176 DSPRCRDIVLGHAALPSLLLQLNHGAKLSMLVNAAWTLSNLCRGKPQPPFDQVSAALPAL 235

Query:   250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
             AQL+  +D+E+L   CWAL YLSDG+N+KIQAVIEA VC RL+ L  H SPSV+ PALRT
Sbjct:   236 AQLIRLDDKELLAYTCWALVYLSDGSNEKIQAVIEANVCARLIGLSIHRSPSVITPALRT 295

Query:   310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID 369
             +GNIVTG+D QTQ II   ALP L+ LL  S+ K+I+KEACWT+SNITAG + QIQAV D
Sbjct:   296 IGNIVTGNDSQTQHIIDLQALPCLVNLLRGSYNKTIRKEACWTVSNITAGCQSQIQAVFD 355

Query:   370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPR 429
             A +   LVNLLQN+E D+KKEAAWAI NA +GG+++QI +LV++ CIKPLCDL  C D +
Sbjct:   356 ADICPALVNLLQNSEGDVKKEAAWAICNAIAGGSYKQIMFLVKQECIKPLCDLLTCSDTQ 415

Query:   430 IVTVCLEGLENILKVGE------AEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNN 483
             +V VCLE L+ ILKVGE      AE        +VN +AQL+EEAEGLEKIE LQSH+NN
Sbjct:   416 LVMVCLEALKKILKVGEVFSSRHAEGIYQCPQTNVNPHAQLIEEAEGLEKIEGLQSHENN 475

Query:   484 EIYEKAVKILETYWLEEDDE 503
             +IYE AVKILETYW+EE++E
Sbjct:   476 DIYETAVKILETYWMEEEEE 495

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

ASPGD|ASPL0000045550 kapA [Emericella nidulans (taxid:162425)]

 Score = 1525 (541.9 bits), Expect = 1.8e-156, P = 1.8e-156
 Identities = 325/542 (59%), Positives = 395/542 (72%)

Query:    10 EVRRNRYKVAVD--ADEGRRRREDNMVEIRKNKREESLLKKR----REG---LQSQQFXX 60
             E RR +YK       DE RRRRE+  VEIRK KREE+L K+R    R+G   +       
Sbjct:     8 EHRRTQYKARNQFRPDELRRRREEQQVEIRKQKREENLAKRRGIQTRDGGIGVGGGMAAA 67

Query:    61 XXXXSNLNLQTKLE-SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVV 119
                     ++++L   LP MV GV+SD    Q++ATT+FRKLLS ER+PPIE VI++GVV
Sbjct:    68 ESDDEASAIESELNVELPEMVKGVFSDQIEAQIQATTKFRKLLSKERNPPIERVIETGVV 127

Query:   120 PRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQ 179
              RFVEFL R  +  +QFEAAWALTNIASG+++ T+VVI+ GAVPIFV+LL+SP  DVREQ
Sbjct:   128 SRFVEFL-RSPHTLVQFEAAWALTNIASGSAQQTQVVIEAGAVPIFVELLSSPEPDVREQ 186

Query:   180 AVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPP 238
             AVWALGN+AGDSP+CRD VL+ GAL PLL  +N+  K+SMLRNATWTLSNFCRGK PQP 
Sbjct:   187 AVWALGNIAGDSPQCRDFVLNAGALRPLLTLINDGRKISMLRNATWTLSNFCRGKTPQPD 246

Query:   239 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP 298
             ++ + PALP LA+L++  D+EVL DACWA+SYLSDG N+KIQAVIEAG+  RLVELL H 
Sbjct:   247 WNTIAPALPVLAKLIYMLDDEVLIDACWAISYLSDGPNEKIQAVIEAGIPRRLVELLMHA 306

Query:   299 SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358
             S SV  PALR+VGNIVTGDD QTQ II  GALP LL LL+ S K  I+KEACWTISNITA
Sbjct:   307 STSVQTPALRSVGNIVTGDDVQTQVIINCGALPALLSLLS-STKDGIRKEACWTISNITA 365

Query:   359 GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTH--EQIKYLVREGCI 416
             GN  QIQ+VIDAG++ PLV+LL N +F  +KEA WAISNATSGG    +QI+YLV +GCI
Sbjct:   366 GNSSQIQSVIDAGIIPPLVHLLANGDFKTRKEACWAISNATSGGLQKPDQIRYLVTQGCI 425

Query:   417 KPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIEN 476
             KPLCDL  CPD +I+ V L+GLENILKVGE +K  G   A VN+YA  +EEA G+EKI +
Sbjct:   426 KPLCDLLACPDNKIIQVALDGLENILKVGEMDKEAGQGDAHVNRYALFIEEAGGMEKIHD 485

Query:   477 LQSHDNNEIYEKAVKILETYWLEEDDETIAAGD----GPQP---GFPYAGNEVQVPSGGF 529
              Q++ N EIY KA  I+E Y+ +ED+   AAGD     PQ    GF     + Q P GGF
Sbjct:   486 CQNNANEEIYMKAYNIIEKYFSDEDE---AAGDIDELAPQQTQTGFTLGATQQQ-P-GGF 540

Query:   530 NF 531
             +F
Sbjct:   541 SF 542

GO:0006606 "protein import into nucleus" evidence=IMP

GO:0005635 "nuclear envelope" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0033554 "cellular response to stress" evidence=IEA

GO:0000087 "M phase of mitotic cell cycle" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=IEA

DICTYBASE|DDB_G0272318 DDB_G0272318 "putative importin subunit alpha B" [Dictyostelium discoideum (taxid:44689)]

 Score = 1512 (537.3 bits), Expect = 4.4e-155, P = 4.4e-155
 Identities = 301/499 (60%), Positives = 388/499 (77%)

Query:     7 ARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFXXXXXXSN 66
             ++ E R+++YK ++D+DE RR+RE+  + IRKNKREESLLKKR + +           S 
Sbjct:     4 SKQETRKSQYKKSIDSDESRRKREEASLSIRKNKREESLLKKRTQAVPGS--TPVKVDSL 61

Query:    67 LNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFL 126
             +N   +LE LP++VA + S++  L L++TT FRKLLSIE+SPPIEEVI++G+VPR V+FL
Sbjct:    62 IN--QRLEQLPSLVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKFL 119

Query:   127 MREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGN 186
               +D+PQLQFEAAWALTNIASGT E T+VVI++GA+ +FV LL+SP DDVREQAVWALGN
Sbjct:   120 YMQDFPQLQFEAAWALTNIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQAVWALGN 179

Query:   187 VAGDSPRCRDLVLSQGALIPLLAQLNERA--KLSMLRNATWTLSNFCRGKPQPPFDQVRP 244
             +AGDS  CRDLVLS  AL PLL+ L   A  K+SM+RNATWTLSNFCRGKPQPPF+ VR 
Sbjct:   180 IAGDSHYCRDLVLSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGKPQPPFEIVRA 239

Query:   245 ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLI 304
             +LP LA+L++  DEEVL DACWALSYLSDG+N++IQ VI+A VC ++VELLGHP+ +V  
Sbjct:   240 SLPVLAKLIYYQDEEVLIDACWALSYLSDGSNERIQEVIDAKVCRKMVELLGHPTIAVQT 299

Query:   305 PALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI 364
             PALRT+GNIVTGDD QTQ +++  AL +LL LL  S K++I+KEACWTISNITAG+++QI
Sbjct:   300 PALRTIGNIVTGDDNQTQIVLSVQALSHLLNLL-QSPKRAIRKEACWTISNITAGDKNQI 358

Query:   365 QAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV 424
             Q VIDA ++  LV LL NAEF+I+KEAAWAISNATS GT +QI +LV +GC+KPLCDL  
Sbjct:   359 QQVIDANIIPSLVYLLANAEFEIQKEAAWAISNATSCGTPQQIHFLVSQGCVKPLCDLLK 418

Query:   425 CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNE 484
               DPRI+ V LEG+ENIL  G+ E  +      VN Y +++E+A+GL KI +LQ H N +
Sbjct:   419 VSDPRIINVALEGIENILVAGKKEAQV----TGVNPYKKIIEDADGLGKIYDLQHHMNKD 474

Query:   485 IYEKAVKILETYWLEEDDE 503
              +EK  +I+ TY LE++ E
Sbjct:   475 TFEKVSRIISTY-LEDEQE 492

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|G4MZS0 MGG_15072 "Importin subunit alpha" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 1480 (526.0 bits), Expect = 1.1e-151, P = 1.1e-151
 Identities = 315/534 (58%), Positives = 385/534 (72%)

Query:    10 EVRRNRYKV--AVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFXXXXXXS-- 65
             E RR ++K       +E RRRRE+  VEIRK KREE+L K+R  G  + +       +  
Sbjct:     8 EHRRTQFKAKNTFKPEELRRRREEQQVEIRKAKREENLAKRRGIGTGADRPGASLGAAPD 67

Query:    66 ----NLNLQTKL-ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 120
                     +++L E LP MV GV+S+    Q++ATT+FRKLLS ER+PPIEEVI++GVV 
Sbjct:    68 SDDDTAPTESQLNEDLPQMVQGVFSESIDAQIQATTKFRKLLSKERNPPIEEVIKTGVVS 127

Query:   121 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQA 180
             RFVEFL R  +  +QFEAAWALTNIASG++  T+VVI+ GAVPIFV+LL SP  DVREQA
Sbjct:   128 RFVEFL-RSPHTLVQFEAAWALTNIASGSATQTQVVIEAGAVPIFVELLGSPEPDVREQA 186

Query:   181 VWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPF 239
             VWALGN+AGDSP+CRD VLS GAL PLL  L +  KLSMLRNATWTLSNFCRGK PQP +
Sbjct:   187 VWALGNIAGDSPQCRDYVLSCGALKPLLNLLGDSRKLSMLRNATWTLSNFCRGKTPQPDW 246

Query:   240 DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS 299
               + PALP LA+LV+S D+EVL DACWA+SYLSDG+NDKIQAVIEAG+  RLVELL H S
Sbjct:   247 TTIAPALPVLAKLVYSLDDEVLIDACWAISYLSDGSNDKIQAVIEAGIPRRLVELLMHAS 306

Query:   300 PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG 359
              SV  PALR+VGNIVTGDD QTQ II  GALP LL LL  S+K  I+KEACWTISNITAG
Sbjct:   307 TSVQTPALRSVGNIVTGDDVQTQVIINCGALPCLLSLLG-SNKDGIRKEACWTISNITAG 365

Query:   360 NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTH--EQIKYLVREGCIK 417
             N  QIQ+V+DA ++ PL++LL N +   +KEA WAISNATSGG    +QI+YLV +GCIK
Sbjct:   366 NSAQIQSVVDANIIPPLIHLLSNGDLKTRKEACWAISNATSGGLQKPDQIRYLVAQGCIK 425

Query:   418 PLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNM-GTATADVNQYAQLVEEAEGLEKIEN 476
             PLCDL  CPD +I+ V L+GLENILKVG+ +K   G     +N+YA  +EE  G+EKI  
Sbjct:   426 PLCDLLSCPDNKIIQVALDGLENILKVGDLDKQAAGEGQDSINRYALFIEECGGMEKIHE 485

Query:   477 LQSHDNNEIYEKAVKILETYWLEEDD--ETIAAGDGPQPGFPYAGNEVQVPSGG 528
              Q++ N EIY KA  I+E Y+ ++D+  +  A   GP   F + GN    PSGG
Sbjct:   486 CQTNANEEIYMKAFNIIEKYFSDDDENADDAAPAQGPNGTFGF-GN----PSGG 534

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O35345	IMA7_MOUSE	No assigned EC number	0.5688	0.9229	0.9160	yes	no
Q19969	IMA3_CAEEL	No assigned EC number	0.4513	0.9285	0.9610	yes	no
Q5RBV0	IMA7_PONAB	No assigned EC number	0.5669	0.9229	0.9160	yes	no
O04294	IMA2_ARATH	No assigned EC number	0.7073	0.9924	0.9943	no	no
Q02821	IMA1_YEAST	No assigned EC number	0.5390	0.9642	0.9464	yes	no
Q96321	IMA1_ARATH	No assigned EC number	0.8149	0.9943	0.9943	no	no
O94374	IMA2_SCHPO	No assigned EC number	0.5377	0.9661	0.9536	yes	no
Q76P29	IMAB_DICDI	No assigned EC number	0.5907	0.9473	0.9767	yes	no
O22478	IMA_SOLLC	No assigned EC number	0.7936	0.9887	0.9981	N/A	no
O60684	IMA7_HUMAN	No assigned EC number	0.5669	0.9229	0.9160	yes	no
Q0V7M0	IMA7_BOVIN	No assigned EC number	0.5669	0.9229	0.9160	yes	no
Q71VM4	IMA1A_ORYSJ	No assigned EC number	0.8402	0.9454	0.9562	yes	no
Q9SLX0	IMA1B_ORYSJ	No assigned EC number	0.7925	0.9943	0.9906	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00033097001 SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (529 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	532
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	0.0
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	4e-35
pfam01749	97	pfam01749, IBB, Importin beta binding domain	1e-32
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-31
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	6e-24
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	8e-24
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-22
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	5e-21
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	1e-10
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-10
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	4e-10
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	3e-08
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	5e-08
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	5e-08
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	7e-08
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	9e-08
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	2e-07
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-06
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-06
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	2e-05
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	2e-05
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	2e-05
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	6e-05
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-04
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-04
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	3e-04
COG1413	335	COG1413, COG1413, FOG: HEAT repeat [Energy product	0.001
pfam02985	31	pfam02985, HEAT, HEAT repeat	0.002
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	0.003

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score =  598 bits (1542), Expect = 0.0
 Identities = 285/525 (54%), Positives = 353/525 (67%), Gaps = 24/525 (4%)

Query: 10  EVRRNRY--KVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPPPAPASNL 67
           E RR  +  K    ADE RRRRE+  VE+RK KREE L  KRR      +    A +S +
Sbjct: 8   EARRYNFKGKGRFSADELRRRREEQQVELRKQKREELL-NKRRNLADVSE---EAESSFI 63

Query: 68  NLQTKLES-LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFL 126
            ++ +  S LP +   ++SDD   QL+A  +FRKLLS E SPPI+ VI +GVVPRFVEF+
Sbjct: 64  PMEQQFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFM 123

Query: 127 MREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGN 186
                  LQFEAAWALTNIASGT++ TKVV+D GAVP+F++LL+S  DDVREQAVWALGN
Sbjct: 124 DEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGN 183

Query: 187 VAGDSPRCRDLVLSQGALIPLLAQLNERA-KLSMLRNATWTLSNFCRGK-PQPPFDQVRP 244
           +AGDS  CRD VL  GAL PLL  L   A  +SMLRNATWTLSN CRGK P P +  +  
Sbjct: 184 IAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQ 243

Query: 245 ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLI 304
           ALP LA+L++S D EVL DACWA+SYLSDG N+KIQAV++ G+  RLVELL H S  +  
Sbjct: 244 ALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQT 303

Query: 305 PALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI 364
           PALR+VGNIVTG D QTQ II  GAL     LL+   K++I+KEACWTISNITAGN +QI
Sbjct: 304 PALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQI 362

Query: 365 QAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTH--EQIKYLVREGCIKPLCDL 422
           QAVIDA L+ PL++LL +AE+ IKKEA WAISNATSGG +  + I+YLV +G IKPLCDL
Sbjct: 363 QAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDL 422

Query: 423 FVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDN 482
               D +I+ V L+ +ENILKVGE ++       ++N YA  VE+A G++ I  LQ   N
Sbjct: 423 LDVVDNKIIEVALDAIENILKVGEQDRLR--YGKNINIYAVYVEKAGGMDAIHGLQDSVN 480

Query: 483 NEIYEKAVKILETYWLEED----------DETIAAGDGPQPGFPY 517
             IY+KA  I+E ++ EED            T   G        +
Sbjct: 481 RTIYDKAYSIIEKFFGEEDAVDELAPETAGNTFTFGSNVNQQGNF 525

Length = 526

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score =  127 bits (321), Expect = 4e-35
 Identities = 45/122 (36%), Positives = 71/122 (58%), Gaps = 2/122 (1%)

Query: 111 EEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA 170
           E VIQ+G +P  V  L   D   +Q EAAWAL+N+++G ++N + V++ G +P  V+LL 
Sbjct: 1   EAVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK 59

Query: 171 SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF 230
           S  ++V + A+WAL N+A      + +VL  G  +P L  L + +   + +NAT  LSN 
Sbjct: 60  SEDEEVVKAALWALRNLAAGPEDNKLIVLEAGG-VPKLVNLLDSSNEDIQKNATGALSNL 118

Query: 231 CR 232
             
Sbjct: 119 AS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|201951 pfam01749, IBB, Importin beta binding domain

 Score =  119 bits (301), Expect = 1e-32
 Identities = 42/97 (43%), Positives = 50/97 (51%), Gaps = 3/97 (3%)

Query: 4  RPNARAEVRRNRYKV-AVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPPPA 62
              + E RR  YK    DA+E RRRRE+  VE+RKNKREE LLK+R  GL  +    P 
Sbjct: 1  ESPNKPEYRRKSYKNKGRDAEEMRRRREEVGVELRKNKREEQLLKRRNVGLPPEDGAEPE 60

Query: 63 PASNLNLQT--KLESLPAMVAGVWSDDSSLQLEATTQ 97
             + +         LP MV GV SDD   QL AT  
Sbjct: 61 SELDGSSDADQLSLELPVMVQGVNSDDPENQLSATQA 97

This family consists of the importin alpha (karyopherin alpha), importin beta (karyopherin beta) binding domain. The domain mediates formation of the importin alpha beta complex; required for classical NLS import of proteins into the nucleus, through the nuclear pore complex and across the nuclear envelope. Also in the alignment is the NLS of importin alpha which overlaps with the IBB domain. Length = 97

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score =  117 bits (294), Expect = 2e-31
 Identities = 47/114 (41%), Positives = 65/114 (57%), Gaps = 1/114 (0%)

Query: 245 ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLI 304
            LPAL  L+ S+DE V  +A WALS LS G ND IQAV+EAG  P LV+LL      V+ 
Sbjct: 8   GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVK 67

Query: 305 PALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358
            AL  + N+  G +     ++  G +P L+ LL  S  + I+K A   +SN+ +
Sbjct: 68  AALWALRNLAAGPEDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 96.2 bits (240), Expect = 6e-24
 Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 14/133 (10%)

Query: 365 QAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV 424
           +AVI AG +  LV+LL +++ ++++EAAWA+SN ++G  ++ I+ +V  G +  L  L  
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAG-NNDNIQAVVEAGGLPALVQLLK 59

Query: 425 CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNE 484
             D  +V   L  L N+              A       +V EA G+ K+ NL    N +
Sbjct: 60  SEDEEVVKAALWALRNL-------------AAGPEDNKLIVLEAGGVPKLVNLLDSSNED 106

Query: 485 IYEKAVKILETYW 497
           I + A   L    
Sbjct: 107 IQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 96.2 bits (240), Expect = 8e-24
 Identities = 39/118 (33%), Positives = 67/118 (56%), Gaps = 2/118 (1%)

Query: 324 IITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA 383
           +I  G LP L+ LL+ S + ++++EA W +SN++AGN D IQAV++AG +  LV LL++ 
Sbjct: 3   VIQAGGLPALVSLLSSSDE-NVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 384 EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENI 441
           + ++ K A WA+ N  +G   +    ++  G +  L +L    +  I       L N+
Sbjct: 62  DEEVVKAALWALRNLAAGPE-DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 92.4 bits (230), Expect = 2e-22
 Identities = 41/113 (36%), Positives = 67/113 (59%), Gaps = 2/113 (1%)

Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ 135
           LPA+V+ + S D ++Q EA      L S   +  I+ V+++G +P  V+ L  ED  ++ 
Sbjct: 9   LPALVSLLSSSDENVQREAAWALSNL-SAGNNDNIQAVVEAGGLPALVQLLKSED-EEVV 66

Query: 136 FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVA 188
             A WAL N+A+G  +N  +V++ G VP  V LL S ++D+++ A  AL N+A
Sbjct: 67  KAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 88.1 bits (219), Expect = 5e-21
 Identities = 44/122 (36%), Positives = 59/122 (48%), Gaps = 4/122 (3%)

Query: 196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPA--LPALAQLV 253
           + V+  G L P L  L   +  ++ R A W LSN   G        V  A  LPAL QL+
Sbjct: 1   EAVIQAGGL-PALVSLLSSSDENVQREAAWALSNLSAGNNDNI-QAVVEAGGLPALVQLL 58

Query: 254 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 313
            S DEEV+  A WAL  L+ G  D    V+EAG  P+LV LL   +  +   A   + N+
Sbjct: 59  KSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118

Query: 314 VT 315
            +
Sbjct: 119 AS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 55.9 bits (136), Expect = 1e-10
 Identities = 16/40 (40%), Positives = 26/40 (65%)

Query: 149 TSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVA 188
             EN + V+D G +P  V+LL S  ++V ++A WAL N++
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 55.5 bits (135), Expect = 2e-10
 Identities = 21/40 (52%), Positives = 31/40 (77%)

Query: 149 TSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVA 188
           + EN + VI+ GAVP  V+LL+SP ++V+E+A WAL N+A
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 54.8 bits (133), Expect = 4e-10
 Identities = 19/41 (46%), Positives = 30/41 (73%)

Query: 360 NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS 400
           + +  QAVI+AG V PLV LL + + ++++EAAWA+SN  +
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 49.8 bits (119), Expect = 3e-08
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNV 187
            +++  AA AL  +A G  E  +  +    +P  + LL    D+VRE A WALG +
Sbjct: 1   WEVREAAALALGALAGGGPELLRPAVPE-LLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 48.6 bits (117), Expect = 5e-08
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 106 RSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS 147
                + V+ +G +P  VE L  ED  ++  EAAWAL+N++S
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSED-EEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 48.6 bits (117), Expect = 5e-08
 Identities = 16/41 (39%), Positives = 21/41 (51%)

Query: 275 TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT 315
           + +  QAVIEAG  P LV+LL  P   V   A   + N+  
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 48.2 bits (116), Expect = 7e-08
 Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)

Query: 107 SPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS 147
               + VI++G VP  V+ L   D  ++Q EAAWAL+N+A+
Sbjct: 2   PENKQAVIEAGAVPPLVQLLSSPD-EEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 47.8 bits (115), Expect = 9e-08
 Identities = 19/41 (46%), Positives = 30/41 (73%)

Query: 360 NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS 400
           + +  QAV+DAG +  LV LL++ + ++ KEAAWA+SN +S
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 47.0 bits (113), Expect = 2e-07
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 275 TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV 314
            ++  QAV++AG  P LVELL      V+  A   + N+ 
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 44.4 bits (106), Expect = 2e-06
 Identities = 16/29 (55%), Positives = 20/29 (68%)

Query: 245 ALPALAQLVHSNDEEVLTDACWALSYLSD 273
           A+P L QL+ S DEEV  +A WALS L+ 
Sbjct: 13  AVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 44.0 bits (105), Expect = 2e-06
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 320 QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358
             Q +I  GA+P L+ LL+   +  +++EA W +SN+ A
Sbjct: 4   NKQAVIEAGAVPPLVQLLSSPDE-EVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 41.6 bits (99), Expect = 2e-05
 Identities = 17/29 (58%), Positives = 21/29 (72%)

Query: 245 ALPALAQLVHSNDEEVLTDACWALSYLSD 273
            LPAL +L+ S DEEV+ +A WALS LS 
Sbjct: 13  GLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 41.6 bits (99), Expect = 2e-05
 Identities = 9/39 (23%), Positives = 15/39 (38%)

Query: 403 THEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENI 441
             E  + +V  G +  L +L    D  +V      L N+
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNL 39

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 11/73 (15%)

Query: 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVRE 178
           +   +E L+ +  P+++  AA AL  +            D  A+P  ++LL  P  +VR 
Sbjct: 1   LEALLEALLSDPDPEVRAAAARALGELG-----------DPEALPALLELLKDPDPEVRR 49

Query: 179 QAVWALGNVAGDS 191
            A  ALG +    
Sbjct: 50  AAAEALGKLGDPE 62

This family includes multiple HEAT repeats. Length = 88

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 40.1 bits (95), Expect = 6e-05
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 317 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358
           DD   Q ++  G LP L+ LL    ++ + KEA W +SN+++
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEE-VVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 39.0 bits (92), Expect = 2e-04
 Identities = 9/39 (23%), Positives = 16/39 (41%)

Query: 403 THEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENI 441
           + E  + ++  G + PL  L   PD  +       L N+
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNL 39

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 38.6 bits (91), Expect = 2e-04
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 191 SPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR 232
           SP  +  V+  GA+ PL+  L+      +   A W LSN   
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSP-DEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 176 VREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF 230
           VRE A  ALG +AG  P      + +  L+P L  L +     +   A W L   
Sbjct: 3   VREAAALALGALAGGGPELLRPAVPE--LLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion]

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 51/212 (24%), Positives = 69/212 (32%), Gaps = 38/212 (17%)

Query: 122 FVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAV 181
            +  L+ ++   ++  AA AL  + S             AVP+  +LL+     VR+ A 
Sbjct: 47  ELLKLLEDEDLLVRLSAAVALGELGSEE-----------AVPLLRELLSDEDPRVRDAAA 95

Query: 182 WALGNVAGDSPRCRDLV----------LSQGALIPLLAQLNERAKLSMLRNATWTLSNFC 231
            ALG + GD      LV          +   A   L    +ERA   +L       S   
Sbjct: 96  DALGEL-GDPEAVPPLVELLENDENEGVRAAAARALGKLGDERALDPLLEALQDEDSGSA 154

Query: 232 RGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWAL-SYLSDGTNDKIQAVIEA----- 285
                     VR A  A   L    D E    A   L   L D   D  +A   A     
Sbjct: 155 AAALDAALLDVRAA--AAEALGELGDPE----AIPLLIELLEDEDADVRRAAASALGQLG 208

Query: 286 ----GVCPRLVELLGHPSPSVLIPALRTVGNI 313
                    LV+ L   S  V   AL  +G I
Sbjct: 209 SENVEAADLLVKALSDESLEVRKAALLALGEI 240

Length = 335

>gnl|CDD|202500 pfam02985, HEAT, HEAT repeat

 Score = 36.0 bits (84), Expect = 0.002
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 162 VPIFVKLLASPSDDVREQAVWALGNVA 188
           +P+ ++LL  P  +VRE A  ALG +A
Sbjct: 2   LPLLLELLNDPDPEVREAAAEALGALA 28

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). Length = 31

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 36.5 bits (85), Expect = 0.003
 Identities = 30/108 (27%), Positives = 38/108 (35%), Gaps = 22/108 (20%)

Query: 247 PALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPA 306
             L  L+   D EV   A  AL  L D               P L+ELL  P P V   A
Sbjct: 3   ALLEALLSDPDPEVRAAAARALGELGD-----------PEALPALLELLKDPDPEVRRAA 51

Query: 307 LRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTIS 354
              +G +  GD           ALP LL LL       ++  A   ++
Sbjct: 52  AEALGKL--GDP---------EALPALLELLQDDDDAVVRAAAASALA 88

This family includes multiple HEAT repeats. Length = 88

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	532
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.97
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.97
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.95
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.94
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.88
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.82
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.78
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.77
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.77
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.75
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.73
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.73
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.71
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.7
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.69
PRK09687	280	putative lyase; Provisional	99.68
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.67
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.67
PRK09687	280	putative lyase; Provisional	99.67
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.62
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.62
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.61
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.61
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.59
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.57
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.56
PTZ00429	746	beta-adaptin; Provisional	99.54
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.53
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.51
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.5
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.49
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.47
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.45
PTZ00429	746	beta-adaptin; Provisional	99.44
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.43
PF01749	97	IBB: Importin beta binding domain; InterPro: IPR00	99.41
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.37
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.35
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.34
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.34
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.27
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	99.19
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	99.13
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	99.11
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.1
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.08
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.07
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.06
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.06
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.03
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	99.02
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.01
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.98
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.96
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.96
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.95
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.93
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.87
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.87
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.86
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.82
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.82
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.79
COG5369	743	Uncharacterized conserved protein [Function unknow	98.77
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.75
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.73
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.68
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.67
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.66
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.66
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	98.64
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.64
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.62
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.61
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.61
TIGR02270	410	conserved hypothetical protein. Members are found	98.6
COG5369	743	Uncharacterized conserved protein [Function unknow	98.55
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.55
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.53
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.5
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.5
TIGR02270	410	conserved hypothetical protein. Members are found	98.47
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.45
PF05536	543	Neurochondrin: Neurochondrin	98.42
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	98.41
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.37
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.34
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.33
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.32
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	98.32
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.3
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.29
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	98.24
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.22
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.2
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.19
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.17
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	98.16
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.16
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.16
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	98.14
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	98.14
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.13
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.13
KOG2062	929	consensus 26S proteasome regulatory complex, subun	98.13
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.11
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	98.11
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.09
COG5096	757	Vesicle coat complex, various subunits [Intracellu	98.09
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.08
PF05536	543	Neurochondrin: Neurochondrin	98.06
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	98.04
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.04
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	97.96
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	97.94
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.94
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.92
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.89
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.85
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.81
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.8
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	97.78
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.73
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.66
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	97.65
KOG0567	289	consensus HEAT repeat-containing protein [General	97.63
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	97.6
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.54
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	97.53
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.52
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	97.5
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	97.5
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	97.49
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.46
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	97.45
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.44
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.42
KOG0567	289	consensus HEAT repeat-containing protein [General	97.41
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	97.41
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.4
KOG2062	929	consensus 26S proteasome regulatory complex, subun	97.34
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.32
COG5116	926	RPN2 26S proteasome regulatory complex component [	97.31
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.3
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.3
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.29
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.28
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.27
KOG0414	1251	consensus Chromosome condensation complex Condensi	97.23
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.2
PRK14707	2710	hypothetical protein; Provisional	97.2
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	97.19
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	97.16
KOG0414	1251	consensus Chromosome condensation complex Condensi	97.15
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	97.15
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.12
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.11
KOG1243	690	consensus Protein kinase [General function predict	97.02
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.99
PF05004	309	IFRD: Interferon-related developmental regulator (	96.97
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	96.94
PF05004	309	IFRD: Interferon-related developmental regulator (	96.91
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.89
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	96.88
PRK14707	2710	hypothetical protein; Provisional	96.87
KOG4653	982	consensus Uncharacterized conserved protein [Funct	96.84
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.81
KOG3036	293	consensus Protein involved in cell differentiation	96.79
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	96.76
KOG3036	293	consensus Protein involved in cell differentiation	96.65
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.63
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.62
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.61
KOG2956	516	consensus CLIP-associating protein [General functi	96.58
KOG4653	982	consensus Uncharacterized conserved protein [Funct	96.52
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.5
KOG2032	533	consensus Uncharacterized conserved protein [Funct	96.49
KOG2032	533	consensus Uncharacterized conserved protein [Funct	96.39
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.39
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.33
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	96.31
COG5656	970	SXM1 Importin, protein involved in nuclear import	96.27
COG5656	970	SXM1 Importin, protein involved in nuclear import	96.26
KOG2025	892	consensus Chromosome condensation complex Condensi	96.18
COG5098	1128	Chromosome condensation complex Condensin, subunit	96.01
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	96.0
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	95.97
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	95.93
PF08045	257	CDC14: Cell division control protein 14, SIN compo	95.91
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	95.86
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.77
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	95.77
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.7
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	95.68
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	95.68
KOG2025	892	consensus Chromosome condensation complex Condensi	95.68
KOG1243	690	consensus Protein kinase [General function predict	95.63
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	95.61
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	95.57
KOG0413	1529	consensus Uncharacterized conserved protein relate	95.54
KOG2956	516	consensus CLIP-associating protein [General functi	95.53
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	95.51
PF08045	257	CDC14: Cell division control protein 14, SIN compo	95.5
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.48
COG5116	926	RPN2 26S proteasome regulatory complex component [	95.47
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	95.42
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	95.42
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	95.17
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	95.05
PF07814	361	WAPL: Wings apart-like protein regulation of heter	95.01
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	95.0
KOG2933	334	consensus Uncharacterized conserved protein [Funct	94.95
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	94.89
COG5098	1128	Chromosome condensation complex Condensin, subunit	94.88
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	94.87
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	94.76
PF07814	361	WAPL: Wings apart-like protein regulation of heter	94.71
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	94.71
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	94.61
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	94.56
KOG2933	334	consensus Uncharacterized conserved protein [Funct	94.33
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	94.32
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	94.25
KOG2137	700	consensus Protein kinase [Signal transduction mech	94.23
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	94.21
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	94.16
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	93.96
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	93.91
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	93.86
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	93.85
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	93.84
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	93.81
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	93.69
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	93.57
KOG2137	700	consensus Protein kinase [Signal transduction mech	93.52
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	93.49
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	93.42
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	93.42
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	93.31
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	93.23
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	93.19
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	93.13
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	93.1
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	93.01
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	92.91
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	92.86
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	92.46
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	92.45
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	92.38
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	92.33
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	92.23
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	92.23
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	92.23
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	92.21
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	91.74
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	91.58
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	91.02
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	90.53
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	90.53
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	90.47
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	90.43
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	90.19
KOG2005	878	consensus 26S proteasome regulatory complex, subun	90.07
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	89.93
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	89.81
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	89.62
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	89.17
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	88.89
KOG0413	1529	consensus Uncharacterized conserved protein relate	88.62
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	88.57
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	88.53
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	88.38
PF06685	249	DUF1186: Protein of unknown function (DUF1186); In	88.06
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	87.86
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	87.84
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	87.79
KOG1848	1610	consensus Uncharacterized conserved protein [Funct	87.7
PF04388	668	Hamartin: Hamartin protein; InterPro: IPR007483 Th	87.44
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	87.15
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	87.08
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	86.7
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	86.36
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	86.25
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	85.8
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	85.72
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	85.66
COG5101	1053	CRM1 Importin beta-related nuclear transport recep	85.31
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	85.06
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	84.83
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	84.3
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	84.05
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	83.88
PF06685	249	DUF1186: Protein of unknown function (DUF1186); In	83.85
PF04869	312	Uso1_p115_head: Uso1 / p115 like vesicle tethering	83.22
PF04821	266	TIMELESS: Timeless protein; InterPro: IPR006906 Th	83.06
cd03561	133	VHS VHS domain family; The VHS domain is present i	83.06
PF08767	319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	82.99
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	82.97
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	82.84
cd03561	133	VHS VHS domain family; The VHS domain is present i	82.64
KOG2229	616	consensus Protein required for actin cytoskeleton	82.6
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	81.96
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	81.95

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=1.9e-90  Score=613.56  Aligned_cols=514  Identities=56%  Similarity=0.851  Sum_probs=467.5

Q ss_pred             CcchHHHhhhcCC--CCCchHHhhhhhHHHHHHHHHhhHHHHHhhhhhcc-CCCCCCCCCCCccchhhhhhccHHHHHhh
Q 009568            6 NARAEVRRNRYKV--AVDADEGRRRREDNMVEIRKNKREESLLKKRREGL-QSQQFPPPAPASNLNLQTKLESLPAMVAG   82 (532)
Q Consensus         6 ~~~~~~~~~~~k~--~~~~~~~~~~r~~~~~~~Rk~~r~~~~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~lv~~   82 (532)
                      .+.++.|+..||+  .+.++|+||+|+++++++||+||+|.+.|||+... .++.+++..+.    .+.....+|.+.+.
T Consensus         4 rf~p~~Rr~~fk~Kg~f~adelRr~ReeQQvElRkqKreE~LnKrRNl~dv~e~a~ss~i~m----eqq~~~elp~lt~~   79 (526)
T COG5064           4 RFVPEARRYNFKGKGRFSADELRRRREEQQVELRKQKREELLNKRRNLADVSEEAESSFIPM----EQQFYSELPQLTQQ   79 (526)
T ss_pred             ccchHHHHhcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhccCch----hHHhhhhhHHHHHH
Confidence            4567889999998  48899999999999999999999999999999833 33333333332    12222468999999


Q ss_pred             hcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCCh
Q 009568           83 VWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAV  162 (532)
Q Consensus        83 L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i  162 (532)
                      |.|+|.+.+..|+..+|++++.+.+||++.+++.|++|.|++++......-++++|+|+|+|+++++..+++.++++|++
T Consensus        80 l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AV  159 (526)
T COG5064          80 LFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAV  159 (526)
T ss_pred             HhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCch
Confidence            99999999999999999999999999999999999999999999544436899999999999999999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhh-hhHHHHHHHHHhhhccCCC-CCCCcc
Q 009568          163 PIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA-KLSMLRNATWTLSNFCRGK-PQPPFD  240 (532)
Q Consensus       163 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~~~~~a~~~L~~L~~~~-~~~~~~  240 (532)
                      |.++++|.+++..++++++|+|+|++++++.+|+.+++.|++.+++.++..+. +..+.+++.|+|+|||+++ |.+...
T Consensus       160 PlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~  239 (526)
T COG5064         160 PLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWS  239 (526)
T ss_pred             HHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchH
Confidence            99999999999999999999999999999999999999999999999995433 5799999999999999998 888888


Q ss_pred             cccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcch
Q 009568          241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ  320 (532)
Q Consensus       241 ~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~  320 (532)
                      .+...+|.|.+++.+.|+++..+|||+++|+++++.+.++.+++.|+.++|+.+|.+++..++.+|++.+||++++++.+
T Consensus       240 ~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~Q  319 (526)
T COG5064         240 NISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQ  319 (526)
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009568          321 TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS  400 (532)
Q Consensus       321 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~  400 (532)
                      ++.++++|+++.+..+|+++ ...+|++|||+++|+++|+.++++++++.+++|+|+.+|...+..++++||||+.|..+
T Consensus       320 TqviI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNats  398 (526)
T COG5064         320 TQVIINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATS  398 (526)
T ss_pred             eehheecccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            99999999999999999999 88999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC--CHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHh
Q 009568          401 GG--THEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQ  478 (532)
Q Consensus       401 ~~--~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~  478 (532)
                      ++  .|+.+++|+++|++++|+++|...|.++..++|+++.++++.|+.......  ...|.|..++++.||+++|..+|
T Consensus       399 gg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~--~nin~ya~~vE~Aggmd~I~~~Q  476 (526)
T COG5064         399 GGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYG--KNINIYAVYVEKAGGMDAIHGLQ  476 (526)
T ss_pred             cccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhcc--CCccHHHHHHHhcccHHHHHHhh
Confidence            77  578999999999999999999999999999999999999999998765432  16888999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHhCCCCcccc--ccCCCCCCCCccCCCCCCCCCCCCcc
Q 009568          479 SHDNNEIYEKAVKILETYWLEEDDET--IAAGDGPQPGFPYAGNEVQVPSGGFN  530 (532)
Q Consensus       479 ~~~~~~v~~~a~~il~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (532)
                      .+.|.+||.+|+.||++||++||.-+  +|+..+  +.|+|+++  +.+.|.|+
T Consensus       477 ~s~n~~iy~KAYsIIe~fFgeeD~vd~lapet~g--~tftfg~~--~~~qg~f~  526 (526)
T COG5064         477 DSVNRTIYDKAYSIIEKFFGEEDAVDELAPETAG--NTFTFGSN--VNQQGNFN  526 (526)
T ss_pred             hccccHHHHHHHHHHHHHcccchhhhhcCccccC--CeeecCCC--ccccCCCC
Confidence            99999999999999999999876443  565544  38999988  45555553

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5e-88  Score=646.98  Aligned_cols=508  Identities=69%  Similarity=1.040  Sum_probs=461.2

Q ss_pred             hHHHhhhcCC-CCCchHHhhhhhHHHHHHHHHhhHHHHHhhhhhccCCCCCCCCCCCccchhhhhhccHHHHHhhhcCCC
Q 009568            9 AEVRRNRYKV-AVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPPPAPASNLNLQTKLESLPAMVAGVWSDD   87 (532)
Q Consensus         9 ~~~~~~~~k~-~~~~~~~~~~r~~~~~~~Rk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~s~~   87 (532)
                      ...|+++||+ +++++|+||||++..+|+||+||+|.+.|||+...+....+..     ..........+..+..+.|++
T Consensus         5 ~~~~~~~~k~~~~~~~e~Rrrr~e~~veiRk~kree~l~k~R~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~S~~   79 (514)
T KOG0166|consen    5 SNNRRRRYKNKGVDAEEMRRRREEQVVEIRKNKREESLLKRRNDEEELMLDELL-----SDSQSQASNLELMLAALYSDD   79 (514)
T ss_pred             hHHHHHHHhhccccHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhhhccccccc-----chhHHHhhhhHHHHHHHhCCC
Confidence            3456667776 6999999999999999999999999999999932211111111     112222334788999999999


Q ss_pred             hHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH
Q 009568           88 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK  167 (532)
Q Consensus        88 ~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~  167 (532)
                      +..+..++..++++++.+.+|+++.++..|+||.||++|...+++.++.+|+|+|+|||+++++.+..+++.|++|.|+.
T Consensus        80 ~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~  159 (514)
T KOG0166|consen   80 PQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQ  159 (514)
T ss_pred             HHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHH
Confidence            99999999999999999988999999999999999999987666999999999999999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC-CCCCcccccchH
Q 009568          168 LLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPAL  246 (532)
Q Consensus       168 lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~l  246 (532)
                      ++.+++..++++|+|+|+|++++++.+|+.++..|++.+|+.++..+....+.++++|+|+|||+++ |.+.+..+..++
T Consensus       160 Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iL  239 (514)
T KOG0166|consen  160 LLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPIL  239 (514)
T ss_pred             HhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence            9999999999999999999999999999999999999999999966656689999999999999999 889999999999


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhh
Q 009568          247 PALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIIT  326 (532)
Q Consensus       247 ~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~  326 (532)
                      |.|..++.+.|+++..++||+++||+++.++.++.+++.|+++.|+.+|.+.+..++.+|++++||+++|++.+++.+++
T Consensus       240 p~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~  319 (514)
T KOG0166|consen  240 PALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVIN  319 (514)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHH
Q 009568          327 YGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQ  406 (532)
Q Consensus       327 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~  406 (532)
                      +|++|.|..+|..++...++++|||+|+||++|++++++.+++.|++|.|+.+|+.++.++|++|+||++|++.++++++
T Consensus       320 ~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~q  399 (514)
T KOG0166|consen  320 SGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQ  399 (514)
T ss_pred             cChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHH
Confidence            99999999999955477799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHH
Q 009568          407 IKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIY  486 (532)
Q Consensus       407 ~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~  486 (532)
                      ..+|++.|++++|+++|...|.+++.+++++|.+|++.++.....+    . ++++.+++++||+++++.||+|+|++||
T Consensus       400 i~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~----~-n~~~~~IEe~ggldkiE~LQ~hen~~Iy  474 (514)
T KOG0166|consen  400 IKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRG----T-NPLAIMIEEAGGLDKIENLQSHENEEIY  474 (514)
T ss_pred             HHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhcccc----c-cHHHHHHHHccChhHHHHhhccccHHHH
Confidence            9999999999999999999999999999999999999999875431    2 8899999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCccccccCCCCCCCCccCCCCCCCCCCCCccC
Q 009568          487 EKAVKILETYWLEEDDETIAAGDGPQPGFPYAGNEVQVPSGGFNF  531 (532)
Q Consensus       487 ~~a~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (532)
                      ++|..||++||++|++++....+  ..+|.|..+   .|.|+|||
T Consensus       475 ~~A~~II~~yf~~e~~~~~~~~~--~~~~~~~~~---~~~~~f~f  514 (514)
T KOG0166|consen  475 KKAYKIIDTYFSEEDDEDDQQPT--TSQFTFQVQ---APDGGFNF  514 (514)
T ss_pred             HHHHHHHHHhcCCCccccccccc--ccccccCCC---CCCCCCCC
Confidence            99999999999988655422211  125555533   68899999

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.9e-43  Score=339.88  Aligned_cols=368  Identities=26%  Similarity=0.412  Sum_probs=330.2

Q ss_pred             ccHHHHHhhhcC-CChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009568           74 ESLPAMVAGVWS-DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN  152 (532)
Q Consensus        74 ~~l~~lv~~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~  152 (532)
                      +.+|.+|+.|.. .++.++++|+++|.+++++. ....+.+++.|.+|.|+.++.+++ .+++..|+|+|+|++.+++.+
T Consensus       109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~agavp~fi~Ll~s~~-~~v~eQavWALgNIagds~~~  186 (514)
T KOG0166|consen  109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAGAVPIFIQLLSSPS-ADVREQAVWALGNIAGDSPDC  186 (514)
T ss_pred             CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCCchHHHHHHhcCCc-HHHHHHHHHHHhccccCChHH
Confidence            789999999984 55899999999999999985 677888999999999999999999 999999999999999999999


Q ss_pred             HHHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhcc
Q 009568          153 TKVVIDHGAVPIFVKLLASPSD-DVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFC  231 (532)
Q Consensus       153 ~~~i~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~  231 (532)
                      ++.+++.|++++|+.++...+. .+.++++|+|.|+|.+....-..-.-..+++.|..++ ++.|++++..+||++++|+
T Consensus       187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll-~~~D~~Vl~Da~WAlsyLs  265 (514)
T KOG0166|consen  187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLL-HSTDEEVLTDACWALSYLT  265 (514)
T ss_pred             HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHh
Confidence            9999999999999999988654 7889999999999976521122222344789999999 8999999999999999999


Q ss_pred             CCC-CCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhC-CCCccchhhHHHH
Q 009568          232 RGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG-HPSPSVLIPALRT  309 (532)
Q Consensus       232 ~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~al~~  309 (532)
                      .+. +..+.....+++|.|+.+|.+.++.++..|+++++|++.+++.+.+.+++.|+++.|..++. ++...++..|+|+
T Consensus       266 dg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~  345 (514)
T KOG0166|consen  266 DGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWT  345 (514)
T ss_pred             cCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHH
Confidence            887 45556667899999999999999999999999999999999999999999999999999998 5677799999999


Q ss_pred             HHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHHhcCchhHH
Q 009568          310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQAVIDAGLVGPLVNLLQNAEFDIK  388 (532)
Q Consensus       310 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  388 (532)
                      |+||+.|+..+.+.+++.|++|.|+.+|++. +.++|++|+|+++|++. ++++++.++++.|+++.|+.+|...|.++.
T Consensus       346 iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii  424 (514)
T KOG0166|consen  346 ISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKII  424 (514)
T ss_pred             HHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHH
Confidence            9999999999999999999999999999999 89999999999999998 789999999999999999999988899999


Q ss_pred             HHHHHHHHHhhcCCC-------HHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 009568          389 KEAAWAISNATSGGT-------HEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG  445 (532)
Q Consensus       389 ~~a~~aL~nl~~~~~-------~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~  445 (532)
                      ..++.+|.|+...+.       .....++-+.|+++.+-.+=.+.+.++...|...+...+...
T Consensus       425 ~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e  488 (514)
T KOG0166|consen  425 LVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEE  488 (514)
T ss_pred             HHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCC
Confidence            999999999986442       233455567899999998888899999999999998887654

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=6.6e-43  Score=310.89  Aligned_cols=365  Identities=25%  Similarity=0.360  Sum_probs=321.1

Q ss_pred             hccHHHHHhhhc-CCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009568           73 LESLPAMVAGVW-SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE  151 (532)
Q Consensus        73 ~~~l~~lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~  151 (532)
                      -+.+|++++.+. ....-.+++|+++|.+++++. ....+.+++.|.+|.|+++|.+++ .+++.+++|+|+|++.+++.
T Consensus       113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt-t~QTkvVvd~~AVPlfiqlL~s~~-~~V~eQavWALGNiAGDS~~  190 (526)
T COG5064         113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT-TQQTKVVVDAGAVPLFIQLLSSTE-DDVREQAVWALGNIAGDSEG  190 (526)
T ss_pred             ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCc-ccceEEEEeCCchHHHHHHHcCch-HHHHHHHHHHhccccCCchh
Confidence            368999999995 555668999999999999986 677778899999999999999998 89999999999999999999


Q ss_pred             hHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhh
Q 009568          152 NTKVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLS  228 (532)
Q Consensus       152 ~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~  228 (532)
                      +++.+++.|++.+++.++.+  .+..+.+.+.|+|.|+|... |.--...+ ...++.|.+++ .+.|+++...|||+++
T Consensus       191 ~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i-sqalpiL~KLi-ys~D~evlvDA~WAiS  268 (526)
T COG5064         191 CRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNI-SQALPILAKLI-YSRDPEVLVDACWAIS  268 (526)
T ss_pred             HHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHH-HHHHHHHHHHH-hhcCHHHHHHHHHHHH
Confidence            99999999999999999877  34688999999999999643 32222222 22588888888 8999999999999999


Q ss_pred             hccCCC-CCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHH
Q 009568          229 NFCRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPAL  307 (532)
Q Consensus       229 ~L~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al  307 (532)
                      +|+.++ .........++.+.|+.+|.+++..++..+++.++|+..+++.+.+.+++.|+++.+..+|.++...++..||
T Consensus       269 YlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaC  348 (526)
T COG5064         269 YLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEAC  348 (526)
T ss_pred             HhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhh
Confidence            999987 4444455577888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC---CHHHHHHHHHcCCHHHHHHHHhcCc
Q 009568          308 RTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG---NRDQIQAVIDAGLVGPLVNLLQNAE  384 (532)
Q Consensus       308 ~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~~~~~i~~L~~ll~~~~  384 (532)
                      |+++|++.++.++.+++++.+++|.|+++|.+. +-.++++|||+++|.+.|   .|+.++++++.|++.+|+.+|...+
T Consensus       349 WTiSNITAGnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~d  427 (526)
T COG5064         349 WTISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVD  427 (526)
T ss_pred             eeecccccCCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccC
Confidence            999999999999999999999999999999988 999999999999999973   6899999999999999999999988


Q ss_pred             hhHHHHHHHHHHHhhcCCCH----------HHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 009568          385 FDIKKEAAWAISNATSGGTH----------EQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENIL  442 (532)
Q Consensus       385 ~~v~~~a~~aL~nl~~~~~~----------~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~  442 (532)
                      .++-..++.++.|+...|..          ....++-+.|+++.+-.+-++.+..+-..|..++..+|
T Consensus       428 Nkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fF  495 (526)
T COG5064         428 NKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFF  495 (526)
T ss_pred             ccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHc
Confidence            88888999999999876632          23344445899999999999999999888888877776

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=3.3e-40  Score=362.23  Aligned_cols=406  Identities=22%  Similarity=0.252  Sum_probs=344.3

Q ss_pred             hccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009568           73 LESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN  152 (532)
Q Consensus        73 ~~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~  152 (532)
                      -+.+|.+++.|.++++..+..|+..+.+++... ..++..+++.|+||.|+++|.+++++.+|++|+|+|++|+.+++++
T Consensus       188 aGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~-ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~  266 (2102)
T PLN03200        188 AGGVDILVKLLSSGNSDAQANAASLLARLMMAF-ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEA  266 (2102)
T ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHH
Confidence            368999999999999999999999998887753 4578889999999999999987654799999999999999999999


Q ss_pred             HHHHHhCCChHHHHHhhCCCC---------HHHHHHHHHHHHHhhCCCch-----------hHHH---HHhcCChHHHHH
Q 009568          153 TKVVIDHGAVPIFVKLLASPS---------DDVREQAVWALGNVAGDSPR-----------CRDL---VLSQGALIPLLA  209 (532)
Q Consensus       153 ~~~i~~~g~i~~L~~lL~~~~---------~~v~~~a~~~L~nl~~~~~~-----------~~~~---~~~~~~l~~L~~  209 (532)
                      +..+++.|+++.|+.++.+++         ..++++|+|+|+|||++.+.           .|+.   ....|++.+++.
T Consensus       267 r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~  346 (2102)
T PLN03200        267 KQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALM  346 (2102)
T ss_pred             HHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHH
Confidence            999999999999999998654         34699999999999987543           2222   234577788877


Q ss_pred             HhhhhhhhHHH----HHHHHHhhhccCCC-CCCCcc-------------------cccchHHHHHHhhcCCCHHHHHHHH
Q 009568          210 QLNERAKLSML----RNATWTLSNFCRGK-PQPPFD-------------------QVRPALPALAQLVHSNDEEVLTDAC  265 (532)
Q Consensus       210 ll~~~~~~~~~----~~a~~~L~~L~~~~-~~~~~~-------------------~~~~~l~~L~~lL~~~d~~v~~~a~  265 (532)
                      ++. ..+....    ..++|+|.+|++++ +.....                   ...++++.|+.++...+.+++.+++
T Consensus       347 l~d-~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av  425 (2102)
T PLN03200        347 VFD-SSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELI  425 (2102)
T ss_pred             hcC-CchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHH
Confidence            773 3333333    35789999999987 333121                   1135667888899989999999999


Q ss_pred             HHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhH
Q 009568          266 WALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSI  345 (532)
Q Consensus       266 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v  345 (532)
                      |+|++++.+..+..+.+.+.|+++.|+.+|.+++..++..|+++|+|++.+++.++..++++|++|.|+++|.++ +..+
T Consensus       426 ~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-~~~i  504 (2102)
T PLN03200        426 RALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-SQKA  504 (2102)
T ss_pred             HHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHH
Confidence            999999999999999999999999999999999999999999999999999988888999999999999999998 9999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHH-HcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcC
Q 009568          346 KKEACWTISNITAGNRDQIQAVI-DAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV  424 (532)
Q Consensus       346 ~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~  424 (532)
                      +++|+|+|+|++.+.++ ++.++ +.|+++.|+++|.++++++++.|+|+|.|++..++.+.         ++.++.+|.
T Consensus       505 qeeAawAL~NLa~~~~q-ir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~---------I~~Lv~LLl  574 (2102)
T PLN03200        505 KEDSATVLWNLCCHSED-IRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAAT---------ISQLTALLL  574 (2102)
T ss_pred             HHHHHHHHHHHhCCcHH-HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhH---------HHHHHHHhc
Confidence            99999999999986444 55555 78999999999999999999999999999998776553         467888899


Q ss_pred             CCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCc
Q 009568          425 CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEED  501 (532)
Q Consensus       425 ~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~~~  501 (532)
                      ++++.++..++++|.+++...+....          ........||++.|..|+.|+++++|+.|.++|.+||....
T Consensus       575 sdd~~~~~~aL~vLgnIlsl~~~~d~----------~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~  641 (2102)
T PLN03200        575 GDLPESKVHVLDVLGHVLSVASLEDL----------VREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQ  641 (2102)
T ss_pred             CCChhHHHHHHHHHHHHHhhcchhHH----------HHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCh
Confidence            99999999999999999886654321          12234457999999999999999999999999999998654

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=1.5e-38  Score=349.31  Aligned_cols=416  Identities=19%  Similarity=0.201  Sum_probs=368.5

Q ss_pred             ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (532)
Q Consensus        74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  153 (532)
                      +.++.|+.+|...+.+.|..++++|..++.++ ...++.+++.|++|.|+++|.+++ +.+|..|+|+|++++.++++++
T Consensus       404 daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~-~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr  481 (2102)
T PLN03200        404 EAKKVLVGLITMATADVQEELIRALSSLCCGK-GGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESK  481 (2102)
T ss_pred             cchhhhhhhhccCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHH
Confidence            45788999999999999999999999998764 566888999999999999999988 8999999999999999899999


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCC
Q 009568          154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG  233 (532)
Q Consensus       154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~  233 (532)
                      ..+++.|++|.|+++|.+++..+++.|+|+|+|++.+.+..+..+...|++++|+.+| .+.+...+..++|+|.+|+..
T Consensus       482 ~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~  560 (2102)
T PLN03200        482 WAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVRT  560 (2102)
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999998888888888899999999999 667889999999999999753


Q ss_pred             CCCCC--------------------------------------cccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCC
Q 009568          234 KPQPP--------------------------------------FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT  275 (532)
Q Consensus       234 ~~~~~--------------------------------------~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~  275 (532)
                      .....                                      .....++++.|+.++.++++.++..|+|+|.+++.+.
T Consensus       561 ~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~  640 (2102)
T PLN03200        561 ADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSR  640 (2102)
T ss_pred             cchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence            21100                                      0012578999999999999999999999999999999


Q ss_pred             hhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCc-chhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHH
Q 009568          276 NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD-FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTIS  354 (532)
Q Consensus       276 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~  354 (532)
                      .+..+.++..|++++++.+|.+.+..++..++++|+|++.+.. .+...+++.|+++.|+.+|++. +..++..|+.+|.
T Consensus       641 ~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~ALa  719 (2102)
T PLN03200        641 QDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVCALA  719 (2102)
T ss_pred             hHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHHHHH
Confidence            9988999999999999999999999999999999999997544 3455678999999999999998 9999999999999


Q ss_pred             HHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHH-H-HHHHHcCChHHHHhhcCCCCHHHHH
Q 009568          355 NITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQ-I-KYLVREGCIKPLCDLFVCPDPRIVT  432 (532)
Q Consensus       355 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~-~-~~l~~~~~l~~L~~lL~~~d~~v~~  432 (532)
                      |++... +....+.+.|+++.|+++|.+++++.|++|+|+|.+++...+.++ . .++...|.+.+|+++|+..|.+...
T Consensus       720 nLl~~~-e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~  798 (2102)
T PLN03200        720 NLLSDP-EVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSA  798 (2102)
T ss_pred             HHHcCc-hHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhh
Confidence            999864 456677788999999999999999999999999999999877554 3 6667889999999999999988777


Q ss_pred             H--HHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCCC
Q 009568          433 V--CLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEE  500 (532)
Q Consensus       433 ~--al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~~  500 (532)
                      .  ++++|..+.+.++....      ..++|...++.+++++.|.....|.+|.++++|.+||+++-.+.
T Consensus       799 ~~~al~~l~~l~~~~~~~~~------~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~  862 (2102)
T PLN03200        799 TSEALEALALLARTKGGANF------SHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQ  862 (2102)
T ss_pred             HHHHHHHHHHHHhhcccCCC------CCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccC
Confidence            6  99999999986554432      56789999999999999966669999999999999999997653

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.3e-29  Score=228.23  Aligned_cols=364  Identities=22%  Similarity=0.243  Sum_probs=315.0

Q ss_pred             ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (532)
Q Consensus        74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  153 (532)
                      +.+..+.-.+++.++.++..|..++.+++-.  ....-.++..+++..|+.-+..+. .++|..+..|++|++.- ++++
T Consensus        85 es~epvl~llqs~d~~Iq~aa~~alGnlAVn--~enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT~-d~nk  160 (550)
T KOG4224|consen   85 ESNEPVLALLQSCDKCIQCAAGEALGNLAVN--MENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLATF-DSNK  160 (550)
T ss_pred             hhhhHHHHHHhCcchhhhhhhhhhhccceec--cCCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhcc-ccch
Confidence            4567788889999999999999999998864  344444567777777776666666 69999999999999984 7888


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCC
Q 009568          154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG  233 (532)
Q Consensus       154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~  233 (532)
                      ..+...|++.++..+-++.+..++..+..+|.|+. +..+.|..+...|+++.|+.++ ++.++.++..++.++++++-+
T Consensus       161 ~kiA~sGaL~pltrLakskdirvqrnatgaLlnmT-hs~EnRr~LV~aG~lpvLVsll-~s~d~dvqyycttaisnIaVd  238 (550)
T KOG4224|consen  161 VKIARSGALEPLTRLAKSKDIRVQRNATGALLNMT-HSRENRRVLVHAGGLPVLVSLL-KSGDLDVQYYCTTAISNIAVD  238 (550)
T ss_pred             hhhhhccchhhhHhhcccchhhHHHHHHHHHHHhh-hhhhhhhhhhccCCchhhhhhh-ccCChhHHHHHHHHhhhhhhh
Confidence            89999999999999888899999999999999995 4456788999999999999999 889999999999999999987


Q ss_pred             CCCCCcccc--cchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHH
Q 009568          234 KPQPPFDQV--RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVG  311 (532)
Q Consensus       234 ~~~~~~~~~--~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~  311 (532)
                      .........  ..++|.|+.++.++++.++..|..+|++++.... +...++++|.+|.++.+|+++........+.|+.
T Consensus       239 ~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~-Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIr  317 (550)
T KOG4224|consen  239 RRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE-YQREIVEAGSLPLLVELLQSPMGPLILASVACIR  317 (550)
T ss_pred             HHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch-hhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHh
Confidence            633333333  3499999999999999999999999999997644 5567899999999999999998888899999999


Q ss_pred             HhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHH
Q 009568          312 NIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEA  391 (532)
Q Consensus       312 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a  391 (532)
                      |++-..- ..-.+.+.|++..|+.+|....+.+++-.|..+|.|++.........+.+.|.+|.+..++.++...+|.+.
T Consensus       318 nisihpl-Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqsei  396 (550)
T KOG4224|consen  318 NISIHPL-NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEI  396 (550)
T ss_pred             hcccccC-cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHH
Confidence            9987654 334678899999999999988567799999999999999778888889999999999999999999999999


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 009568          392 AWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEA  447 (532)
Q Consensus       392 ~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~  447 (532)
                      ..++..++..  .....+|.+.|+++.|+.++.+...+++..+..+|.|+...-+.
T Consensus       397 sac~a~Lal~--d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~  450 (550)
T KOG4224|consen  397 SACIAQLALN--DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEH  450 (550)
T ss_pred             HHHHHHHHhc--cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHH
Confidence            9999999884  35678889999999999999999999999999999999865443

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.6e-28  Score=221.14  Aligned_cols=364  Identities=20%  Similarity=0.266  Sum_probs=316.3

Q ss_pred             hhhccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCh
Q 009568           71 TKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTS  150 (532)
Q Consensus        71 ~~~~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~  150 (532)
                      ..+..+..++..+.++.-++|..++.++.+++..  +.....+...|.+.++.++-++.+ ..+|..+..+|.|++. +.
T Consensus       123 v~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~--d~nk~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmTh-s~  198 (550)
T KOG4224|consen  123 VSLLGLDLLILQMMTDGVEVQCNAVGCITNLATF--DSNKVKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTH-SR  198 (550)
T ss_pred             EeccChHHHHHHhcCCCcEEEeeehhhhhhhhcc--ccchhhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhh-hh
Confidence            3456778888888888888999999999999876  566667889999999999878877 8999999999999998 88


Q ss_pred             hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcC--ChHHHHHHhhhhhhhHHHHHHHHHhh
Q 009568          151 ENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQG--ALIPLLAQLNERAKLSMLRNATWTLS  228 (532)
Q Consensus       151 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~--~l~~L~~ll~~~~~~~~~~~a~~~L~  228 (532)
                      ++++.++..|++|.|+.++++.+..++..|+.+++||+.+.. .|+.+.+.+  .++.|+.++ .+.++.++..+..+|.
T Consensus       199 EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~-~Rk~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lALr  276 (550)
T KOG4224|consen  199 ENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRR-ARKILAQAEPKLVPALVDLM-DDGSDKVKCQAGLALR  276 (550)
T ss_pred             hhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHH-HHHHHHhcccchHHHHHHHH-hCCChHHHHHHHHHHh
Confidence            999999999999999999999999999999999999987654 577888887  899999999 8889999999999999


Q ss_pred             hccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCC-ccchhhHH
Q 009568          229 NFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS-PSVLIPAL  307 (532)
Q Consensus       229 ~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~v~~~al  307 (532)
                      +|+.+..........+.+|.++++|+++-.........|+.|++..+-. ...+.+.|++.+|+.+|...+ .+++..|.
T Consensus       277 nlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplN-e~lI~dagfl~pLVrlL~~~dnEeiqchAv  355 (550)
T KOG4224|consen  277 NLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLN-EVLIADAGFLRPLVRLLRAGDNEEIQCHAV  355 (550)
T ss_pred             hhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCc-ccceecccchhHHHHHHhcCCchhhhhhHH
Confidence            9999876666666789999999999998888888888899999865432 356789999999999998864 55999999


Q ss_pred             HHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhH
Q 009568          308 RTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDI  387 (532)
Q Consensus       308 ~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v  387 (532)
                      .+|.|++.........+.++|.+|.+..++.+. .-.++.+...+++.++.. ......+.+.|++|.|+.++.+.+.++
T Consensus       356 stLrnLAasse~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal~-d~~k~~lld~gi~~iLIp~t~s~s~Ev  433 (550)
T KOG4224|consen  356 STLRNLAASSEHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLALN-DNDKEALLDSGIIPILIPWTGSESEEV  433 (550)
T ss_pred             HHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHhc-cccHHHHhhcCCcceeecccCccchhh
Confidence            999999998888889999999999999999998 889999999999998864 344668889999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHH------cCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 009568          388 KKEAAWAISNATSGGTHEQIKYLVR------EGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG  445 (532)
Q Consensus       388 ~~~a~~aL~nl~~~~~~~~~~~l~~------~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~  445 (532)
                      +.+|+.||.|+++.  .+....+++      .|+-..|..++.+.+..++..+.|.+..++...
T Consensus       434 ~gNaAaAL~Nlss~--v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h  495 (550)
T KOG4224|consen  434 RGNAAAALINLSSD--VEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDH  495 (550)
T ss_pred             cccHHHHHHhhhhh--hHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhC
Confidence            99999999999984  455555554      345567888888999999999999999998764

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.95  E-value=2.4e-24  Score=220.02  Aligned_cols=395  Identities=21%  Similarity=0.182  Sum_probs=318.9

Q ss_pred             HHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 009568           77 PAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVV  156 (532)
Q Consensus        77 ~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i  156 (532)
                      .++-..+... ..+...+...|.+++..  ......+.+.|+++.|+++|++++ .++...++++|.+++. ..+++..+
T Consensus       253 kk~~~l~~kQ-eqLlrv~~~lLlNLAed--~~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi-~~ENK~~m  327 (708)
T PF05804_consen  253 KKLQTLIRKQ-EQLLRVAFYLLLNLAED--PRVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSI-FKENKDEM  327 (708)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHhcC--hHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC-CHHHHHHH
Confidence            3344444443 44555778889998864  455667889999999999999987 8999999999999999 77899999


Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCC
Q 009568          157 IDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ  236 (532)
Q Consensus       157 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~  236 (532)
                      .+.|+++.|.+++.+++..++..++++|.|++.+. ..|..+++.|++|.|+.+|. +  +..+..++.+|.++|.....
T Consensus       328 ~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~-~~R~~mV~~GlIPkLv~LL~-d--~~~~~val~iLy~LS~dd~~  403 (708)
T PF05804_consen  328 AESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDP-ELRSQMVSLGLIPKLVELLK-D--PNFREVALKILYNLSMDDEA  403 (708)
T ss_pred             HHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCH-HHHHHHHHCCCcHHHHHHhC-C--CchHHHHHHHHHHhccCHhh
Confidence            99999999999999999999999999999997665 46999999999999999994 2  34556789999999998766


Q ss_pred             CCcccccchHHHHHHhhcC-CCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhc
Q 009568          237 PPFDQVRPALPALAQLVHS-NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT  315 (532)
Q Consensus       237 ~~~~~~~~~l~~L~~lL~~-~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~  315 (532)
                      .......+++|.+++++.. +++.+...+++.+.|++.... +.+.+.+.+.++.|+........   ...+.++.|++.
T Consensus       404 r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~r-naqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~  479 (708)
T PF05804_consen  404 RSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKR-NAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQ  479 (708)
T ss_pred             HHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHH-HHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHh
Confidence            6666667899999987654 567777888899999987654 55788888899999988755433   224578999998


Q ss_pred             CCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--chhHHHHHHH
Q 009568          316 GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA--EFDIKKEAAW  393 (532)
Q Consensus       316 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~  393 (532)
                      +++. .+..+. +.+..|+.++..+.+++...++..+|+|++..+.+..+.+-+.+++|.|...|..+  ++++..+++.
T Consensus       480 h~~~-~k~~f~-~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi  557 (708)
T PF05804_consen  480 HDGP-LKELFV-DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVI  557 (708)
T ss_pred             cCch-HHHHHH-HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHH
Confidence            7753 333333 46777778887765789999999999999976555444555789999999999875  5689999999


Q ss_pred             HHHHhhcCCCHHHHHHHHHcCChHHHHhhcCC--CCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccH
Q 009568          394 AISNATSGGTHEQIKYLVREGCIKPLCDLFVC--PDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGL  471 (532)
Q Consensus       394 aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~--~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  471 (532)
                      .++.++.  ++.....+.+.|+++.|+++|+.  +|.+++.+++.+++.++...+.             ....+.+.+..
T Consensus       558 ~~gtla~--d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~t-------------r~~ll~~~~~~  622 (708)
T PF05804_consen  558 LLGTLAS--DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEET-------------REVLLKETEIP  622 (708)
T ss_pred             HHHHHHC--CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHH-------------HHHHHhccchH
Confidence            9999987  66777888899999999999975  6789999999999999987554             24567788999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhCCCCc
Q 009568          472 EKIENLQSHDNNEIYEKAVKILETYWLEED  501 (532)
Q Consensus       472 ~~l~~L~~~~~~~v~~~a~~il~~~~~~~~  501 (532)
                      ..+..|.++.|++|++.|...++-.-+.++
T Consensus       623 ~ylidL~~d~N~~ir~~~d~~Ldii~e~d~  652 (708)
T PF05804_consen  623 AYLIDLMHDKNAEIRKVCDNALDIIAEYDE  652 (708)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHhCH
Confidence            999999999999999888777765544443

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.94  E-value=2.3e-24  Score=220.24  Aligned_cols=382  Identities=19%  Similarity=0.224  Sum_probs=310.0

Q ss_pred             hccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009568           73 LESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN  152 (532)
Q Consensus        73 ~~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~  152 (532)
                      -+.++.|++.|.+++.++...++..|.++.-.  ......+.+.|++|.|++++.+++ .+++..|+++|.|++. +++.
T Consensus       289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~--~ENK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSf-d~~~  364 (708)
T PF05804_consen  289 KGIVSLLVKCLDRENEELLILAVTFLKKLSIF--KENKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSF-DPEL  364 (708)
T ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCc-CHHH
Confidence            36899999999999999999999999999765  456788899999999999999988 8999999999999999 8889


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccC
Q 009568          153 TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR  232 (532)
Q Consensus       153 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~  232 (532)
                      +..+++.|++|.|+.+|.++  ..+..|+.+|.+++.+. ..|..+...++++.+++++...+++.+...+++++.||+.
T Consensus       365 R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd-~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~  441 (708)
T PF05804_consen  365 RSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDD-EARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLAL  441 (708)
T ss_pred             HHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCH-hhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhc
Confidence            99999999999999999754  46677999999998755 4788999999999999998777777788889999999999


Q ss_pred             CCCCCCcccccchHHHHHHhhcC-CCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCC-CCccchhhHHHHH
Q 009568          233 GKPQPPFDQVRPALPALAQLVHS-NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLIPALRTV  310 (532)
Q Consensus       233 ~~~~~~~~~~~~~l~~L~~lL~~-~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~al~~L  310 (532)
                      +..........++++.|++.... .|+-    .+..+.|++..++.... .+. +++..|+.++.. .+++....++.+|
T Consensus       442 ~~rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h~~~~k~-~f~-~~i~~L~~~v~~~~~ee~~vE~LGiL  515 (708)
T PF05804_consen  442 NKRNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQHDGPLKE-LFV-DFIGDLAKIVSSGDSEEFVVECLGIL  515 (708)
T ss_pred             CHHHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhcCchHHH-HHH-HHHHHHHHHhhcCCcHHHHHHHHHHH
Confidence            98655555556788888766544 4433    33578888877644333 332 577788888766 4678999999999


Q ss_pred             HHhhcCCcchhHHHhhcCchHHHHHHhcCCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--chhH
Q 009568          311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSH-KKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA--EFDI  387 (532)
Q Consensus       311 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v  387 (532)
                      +|+...+....+.+.+.+++|.+..+|..+. .+++.-+++..+|.++. ++.....+.+.|+++.|+.+|...  |.++
T Consensus       516 aNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~  594 (708)
T PF05804_consen  516 ANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEI  594 (708)
T ss_pred             HhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHH
Confidence            9999876666666667899999999997542 45789999999999986 466677777999999999999875  7899


Q ss_pred             HHHHHHHHHHhhcCCCHHHHHHHH-HcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHH
Q 009568          388 KKEAAWAISNATSGGTHEQIKYLV-REGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVE  466 (532)
Q Consensus       388 ~~~a~~aL~nl~~~~~~~~~~~l~-~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~  466 (532)
                      ....++++..+..+.  +.+..++ +.+++..|++++.++++.++..|-.+|.-+....+.+..      ....-....-
T Consensus       595 VlQil~~f~~ll~h~--~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~~------ri~~~kF~~h  666 (708)
T PF05804_consen  595 VLQILYVFYQLLFHE--ETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWAE------RIRREKFRWH  666 (708)
T ss_pred             HHHHHHHHHHHHcCh--HHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHHH------HhhHHHHHHH
Confidence            999999999999974  4455655 578999999999999999999999999999988877654      2232334444


Q ss_pred             HhccHHHHHH
Q 009568          467 EAEGLEKIEN  476 (532)
Q Consensus       467 ~~g~~~~l~~  476 (532)
                      ...+++.++.
T Consensus       667 N~~WLe~v~~  676 (708)
T PF05804_consen  667 NAQWLEMVES  676 (708)
T ss_pred             HHHHHHHHhc
Confidence            5556666654

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=3.7e-20  Score=183.84  Aligned_cols=390  Identities=21%  Similarity=0.299  Sum_probs=316.4

Q ss_pred             cHHHHHhhhcCC-ChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568           75 SLPAMVAGVWSD-DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (532)
Q Consensus        75 ~l~~lv~~L~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  153 (532)
                      .+..|++.|+.. |+..|++|+..|..+++..+......+.-..++|.|+.+|+...+.++...|+++|++++.--|...
T Consensus       168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~  247 (1051)
T KOG0168|consen  168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS  247 (1051)
T ss_pred             HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence            568888888866 9999999999999999987666666666667999999999999889999999999999999889999


Q ss_pred             HHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccC
Q 009568          154 KVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR  232 (532)
Q Consensus       154 ~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~  232 (532)
                      ..+++.++||.|+.-|.. +..++.++++.+|-.|+...+.   .+++.|++...+..| +--...+++.|+.+..|+|.
T Consensus       248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~Ck  323 (1051)
T KOG0168|consen  248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYL-DFFSIHAQRVALAIAANCCK  323 (1051)
T ss_pred             heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence            999999999999986655 7899999999999999877653   678999999999999 77789999999999999999


Q ss_pred             CCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccC---ChhHHHHHHHhCchHHHHHhhCCC----Cccchhh
Q 009568          233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLGHP----SPSVLIP  305 (532)
Q Consensus       233 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~l~~L~~lL~~~----~~~v~~~  305 (532)
                      .-+...+..+...+|.|..+|...|.+..+.+|-|+.+++++   .++..+.+...+++....++|.-.    +..+...
T Consensus       324 si~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~  403 (1051)
T KOG0168|consen  324 SIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTG  403 (1051)
T ss_pred             cCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhH
Confidence            988888888999999999999999999999999999999854   567778899999999999998654    3345666


Q ss_pred             HHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCC-------------chhHHHH------------------------
Q 009568          306 ALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH-------------KKSIKKE------------------------  348 (532)
Q Consensus       306 al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-------------~~~v~~~------------------------  348 (532)
                      .++.+..++++.+-....++..++...|..+|....             .|.-..+                        
T Consensus       404 vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~  483 (1051)
T KOG0168|consen  404 VIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSL  483 (1051)
T ss_pred             HHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhh
Confidence            788889999888877777777788887777775320             0000000                        


Q ss_pred             ----------HHH--------------HHHHHhc--------------------------CCHHHHHHHHHcCCHHHHHH
Q 009568          349 ----------ACW--------------TISNITA--------------------------GNRDQIQAVIDAGLVGPLVN  378 (532)
Q Consensus       349 ----------a~~--------------~L~nl~~--------------------------~~~~~~~~l~~~~~i~~L~~  378 (532)
                                +.|              +.+.+..                          ..|+..+.++. .++|.|++
T Consensus       484 ~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~-~llpVLve  562 (1051)
T KOG0168|consen  484 IYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGK-DLLPVLVE  562 (1051)
T ss_pred             hcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHH-HHHHHHHH
Confidence                      000              0001111                          11233333333 37899999


Q ss_pred             HHhcC-chhHHHHHHHHHHHhhcCCCHHHHHHHHHc-CChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCc
Q 009568          379 LLQNA-EFDIKKEAAWAISNATSGGTHEQIKYLVRE-GCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATA  456 (532)
Q Consensus       379 ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~-~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~  456 (532)
                      ++.+. ++.||..++.||..+....+.+.+..++.+ .+-..+-.+|.++|..|+.-+|....-|++.-           
T Consensus       563 VYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKl-----------  631 (1051)
T KOG0168|consen  563 VYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKL-----------  631 (1051)
T ss_pred             HHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHh-----------
Confidence            98876 899999999999999999898988887755 55567778999999999999999999888764           


Q ss_pred             cchHHHHHHHHhccHHHHHHHhcCC
Q 009568          457 DVNQYAQLVEEAEGLEKIENLQSHD  481 (532)
Q Consensus       457 ~~~~~~~~~~~~g~~~~l~~L~~~~  481 (532)
                       ...|...|.+.|.+..++.|....
T Consensus       632 -pd~F~~~F~REGV~~~v~~L~~~~  655 (1051)
T KOG0168|consen  632 -PDTFSPSFRREGVFHAVKQLSVDS  655 (1051)
T ss_pred             -HHHhhhhHhhhhHHHHHHHHhccC
Confidence             344888999999999999997643

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.82  E-value=5e-18  Score=169.75  Aligned_cols=366  Identities=21%  Similarity=0.250  Sum_probs=281.2

Q ss_pred             cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch--hH
Q 009568          118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR--CR  195 (532)
Q Consensus       118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~--~~  195 (532)
                      -+|..+.+|.+.+ +.+|..|+.-+-.++.++.+.+..+.+.|+|+.|+.+|.+.+.+++.+|+|+|.|+......  .+
T Consensus       234 ~lpe~i~mL~~q~-~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK  312 (717)
T KOG1048|consen  234 TLPEVISMLMSQD-PSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK  312 (717)
T ss_pred             ccHHHHHHHhccC-hhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence            4788899999888 89999999999999999999999999999999999999999999999999999999966544  67


Q ss_pred             HHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcC--------------CCHHHH
Q 009568          196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHS--------------NDEEVL  261 (532)
Q Consensus       196 ~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~--------------~d~~v~  261 (532)
                      -.+.+.++++.+++++....|.++++.++.+|+||+..+ ..........++.|..-+-.              .+..+.
T Consensus       313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf  391 (717)
T KOG1048|consen  313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF  391 (717)
T ss_pred             hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceee
Confidence            788899999999999987789999999999999999984 33444455566666544321              135688


Q ss_pred             HHHHHHHHHhccCChhHHHHHHHh-CchHHHHHhhCC------CCccchhhHHHHHHHhhcCCc----------------
Q 009568          262 TDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLGH------PSPSVLIPALRTVGNIVTGDD----------------  318 (532)
Q Consensus       262 ~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~v~~~al~~L~nl~~~~~----------------  318 (532)
                      ..+..||.|++....+..+.+.+. |.+..|+..+.+      .+......|+.++.|+...-.                
T Consensus       392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~  471 (717)
T KOG1048|consen  392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR  471 (717)
T ss_pred             ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence            999999999998666665666544 788888888752      455667778888888864221                


Q ss_pred             ---------------chhHH----------------------HhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCH
Q 009568          319 ---------------FQTQC----------------------IITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNR  361 (532)
Q Consensus       319 ---------------~~~~~----------------------~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~  361 (532)
                                     ...+.                      +....++..-..+|..+.++.+.+.++.+|-|++++..
T Consensus       472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~  551 (717)
T KOG1048|consen  472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW  551 (717)
T ss_pred             cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence                           00000                      11112333334444433377889999999999998532


Q ss_pred             ---HHH-HHH-HHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCC------CHHH
Q 009568          362 ---DQI-QAV-IDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCP------DPRI  430 (532)
Q Consensus       362 ---~~~-~~l-~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~------d~~v  430 (532)
                         ..+ ..+ .+..++|.|+++++.++..|.+.++.+|.|++.+.  .. +.++..++++.|++.|...      +.++
T Consensus       552 ~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~--rn-k~ligk~a~~~lv~~Lp~~~~~~~~sedt  628 (717)
T KOG1048|consen  552 TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI--RN-KELIGKYAIPDLVRCLPGSGPSTSLSEDT  628 (717)
T ss_pred             cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc--hh-hhhhhcchHHHHHHhCcCCCCCcCchHHH
Confidence               222 233 36678999999999999999999999999999853  33 3345578999999999753      3578


Q ss_pred             HHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhc-CCCHHHHHHHHHHHHHhCCCCc
Q 009568          431 VTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQS-HDNNEIYEKAVKILETYWLEED  501 (532)
Q Consensus       431 ~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~-~~~~~v~~~a~~il~~~~~~~~  501 (532)
                      +..++..|.+++.....             .+..+-+.+|+++|..|.. ..++.+.+.|..++..++...|
T Consensus       629 v~~vc~tl~niv~~~~~-------------nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~e  687 (717)
T KOG1048|consen  629 VRAVCHTLNNIVRKNVL-------------NAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKE  687 (717)
T ss_pred             HHHHHHhHHHHHHHhHH-------------HHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence            89999999999965433             3556667999999999954 5667899999999998887654

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.78  E-value=4.9e-17  Score=162.72  Aligned_cols=362  Identities=20%  Similarity=0.229  Sum_probs=276.7

Q ss_pred             cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh--h
Q 009568           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE--N  152 (532)
Q Consensus        75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~--~  152 (532)
                      .+|..+.+|.+.++.+|-.|+..+..+..+. +.....+-+.|.||.||.+|.+.. .+++..|+++|.|+..++..  +
T Consensus       234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd-~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~~~N  311 (717)
T KOG1048|consen  234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGD-NKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKSTDSN  311 (717)
T ss_pred             ccHHHHHHHhccChhhhHHHHHHHHHHHhhh-HHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCCccc
Confidence            6799999999999999999999999988763 455556678999999999999998 99999999999999997766  8


Q ss_pred             HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhh-h------------hhhH
Q 009568          153 TKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE-R------------AKLS  218 (532)
Q Consensus       153 ~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~-~------------~~~~  218 (532)
                      +-.+.+.++|+.++.+|.. .|.++++.+..+|+||++. +.++..++. ..+..|...+.. .            .+.+
T Consensus       312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~  389 (717)
T KOG1048|consen  312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDST  389 (717)
T ss_pred             chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHHH-HHHHHHHHhhcccccccCCCCcccccccce
Confidence            8899999999999999987 8999999999999999776 334444443 356666654421 1            1367


Q ss_pred             HHHHHHHHhhhccCCC--CCCCcccccchHHHHHHhhc------CCCHHHHHHHHHHHHHhccCCh-----hHHH-----
Q 009568          219 MLRNATWTLSNFCRGK--PQPPFDQVRPALPALAQLVH------SNDEEVLTDACWALSYLSDGTN-----DKIQ-----  280 (532)
Q Consensus       219 ~~~~a~~~L~~L~~~~--~~~~~~~~~~~l~~L~~lL~------~~d~~v~~~a~~~L~~l~~~~~-----~~~~-----  280 (532)
                      +..+++.+|.|++...  ....+....|++..|+..++      ..|....+++...+.|++..-.     ...+     
T Consensus       390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~  469 (717)
T KOG1048|consen  390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANI  469 (717)
T ss_pred             eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcc
Confidence            8999999999999854  23334456788888887776      3366777888888888874211     0000     


Q ss_pred             ---------------------H----------------------HHHhCchHHHHHhh-CCCCccchhhHHHHHHHhhcC
Q 009568          281 ---------------------A----------------------VIEAGVCPRLVELL-GHPSPSVLIPALRTVGNIVTG  316 (532)
Q Consensus       281 ---------------------~----------------------~~~~~~l~~L~~lL-~~~~~~v~~~al~~L~nl~~~  316 (532)
                                           .                      +....++..-..+| .+.++.+.+.++.+|-|++.+
T Consensus       470 ~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~  549 (717)
T KOG1048|consen  470 ARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAG  549 (717)
T ss_pred             cccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhcc
Confidence                                 0                      11111233323333 234567888999999999987


Q ss_pred             Ccch----hHHH-hhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC------ch
Q 009568          317 DDFQ----TQCI-ITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA------EF  385 (532)
Q Consensus       317 ~~~~----~~~~-~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~------~~  385 (532)
                      ....    +..+ ....+++.++.+|... ++.|.+.++.+|.|++.+-  ..+.++....++.|++.|...      +.
T Consensus       550 ~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d~--rnk~ligk~a~~~lv~~Lp~~~~~~~~se  626 (717)
T KOG1048|consen  550 LWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRDI--RNKELIGKYAIPDLVRCLPGSGPSTSLSE  626 (717)
T ss_pred             CCcchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccCc--hhhhhhhcchHHHHHHhCcCCCCCcCchH
Confidence            6532    2233 5678999999999999 9999999999999999863  235677788999999999764      36


Q ss_pred             hHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCC-CHHHHHHHHHHHHHHHHh
Q 009568          386 DIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCP-DPRIVTVCLEGLENILKV  444 (532)
Q Consensus       386 ~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~-d~~v~~~al~~L~~l~~~  444 (532)
                      ++...+|.+|.|++.. +....+.+.+.+.++.|+.+..+. +++..+.+-..|..+=.+
T Consensus       627 dtv~~vc~tl~niv~~-~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y  685 (717)
T KOG1048|consen  627 DTVRAVCHTLNNIVRK-NVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQY  685 (717)
T ss_pred             HHHHHHHHhHHHHHHH-hHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence            8889999999999975 667788889999999999988864 457777777776666444

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.77  E-value=3.3e-15  Score=151.94  Aligned_cols=398  Identities=18%  Similarity=0.200  Sum_probs=299.6

Q ss_pred             HHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 009568           77 PAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVV  156 (532)
Q Consensus        77 ~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i  156 (532)
                      +.+..+|++.+.+....++..|.+++...  .+...  ..+..+.|...|.+++ +.++..+++.|.+++..+......+
T Consensus        41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~--~~~~l--~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~  115 (503)
T PF10508_consen   41 PVLFDCLNTSNREQVELICDILKRLLSAL--SPDSL--LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLL  115 (503)
T ss_pred             HHHHHHHhhcChHHHHHHHHHHHHHHhcc--CHHHH--HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHh
Confidence            34778888888888888899999998853  22222  4568899999999998 9999999999999999777778888


Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCC-
Q 009568          157 IDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP-  235 (532)
Q Consensus       157 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~-  235 (532)
                      .+.++++.++.++.+++..+...|+.+|.+++...+.. +.+...+.+..|..++ ...+..++..+..++.+++...+ 
T Consensus       116 ~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~  193 (503)
T PF10508_consen  116 VDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPE  193 (503)
T ss_pred             cCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHH
Confidence            89999999999999999999999999999999876654 4566777788888888 55566788889999999987763 


Q ss_pred             CCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCC--c---cchhh-HHHH
Q 009568          236 QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS--P---SVLIP-ALRT  309 (532)
Q Consensus       236 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~--~---~v~~~-al~~  309 (532)
                      ........|+++.++..+.++|.-++..++.++..++. .+...+.+.+.|+++.|..++.+.+  +   .+..+ .+..
T Consensus       194 ~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f  272 (503)
T PF10508_consen  194 AAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKF  272 (503)
T ss_pred             HHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHH
Confidence            23333446899999999999999999999999999998 4555688999999999999996642  2   22333 3478


Q ss_pred             HHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH-HHcC-----CHHHHHHHHhcC
Q 009568          310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAV-IDAG-----LVGPLVNLLQNA  383 (532)
Q Consensus       310 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l-~~~~-----~i~~L~~ll~~~  383 (532)
                      .++++...+....... ..++..+..++.+. ++..+..|.-+++.++.. .+....+ .+.+     ++..+.....++
T Consensus       273 ~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~-d~~~~~~A~dtlg~igst-~~G~~~L~~~~~~~~~~~l~~~~~~~~~~  349 (503)
T PF10508_consen  273 FGNLARVSPQEVLELY-PAFLERLFSMLESQ-DPTIREVAFDTLGQIGST-VEGKQLLLQKQGPAMKHVLKAIGDAIKSG  349 (503)
T ss_pred             HHHHHhcChHHHHHHH-HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHhCC-HHHHHHHHhhcchHHHHHHHHHHHHhcCC
Confidence            8888875443322111 24555666777777 899999999999999864 5555555 3332     344444455556


Q ss_pred             chhHHHHHHHHHHHhhcCCCH---HHH----HHHH---HcCChH-HHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhcc
Q 009568          384 EFDIKKEAAWAISNATSGGTH---EQI----KYLV---REGCIK-PLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMG  452 (532)
Q Consensus       384 ~~~v~~~a~~aL~nl~~~~~~---~~~----~~l~---~~~~l~-~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~  452 (532)
                      ..++|..++.++.++...++.   +.+    ....   ..+-.. .+..+++.+=++++..++..|..++...-.     
T Consensus       350 ~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg-----  424 (503)
T PF10508_consen  350 STELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWG-----  424 (503)
T ss_pred             chHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHH-----
Confidence            778999999999999665432   111    1111   223455 788889888899999999999999875321     


Q ss_pred             CCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009568          453 TATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL  498 (532)
Q Consensus       453 ~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~  498 (532)
                              ...+....|.++.+-+=....+.+..+.=.+++..+..
T Consensus       425 --------~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~  462 (503)
T PF10508_consen  425 --------QREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAK  462 (503)
T ss_pred             --------HHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHh
Confidence                    24456667777777665667788888887888887763

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.77  E-value=2.6e-15  Score=152.73  Aligned_cols=402  Identities=18%  Similarity=0.188  Sum_probs=296.1

Q ss_pred             HHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 009568           77 PAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVV  156 (532)
Q Consensus        77 ~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i  156 (532)
                      ..+++.|...  ...+.++..+..-+..  .+....+    ..+.+..+|++.+ .+....++.+|..+.... .... +
T Consensus         6 ~~~l~~l~~~--~~~~~~L~~l~~~~~~--~~~l~~~----~~~~lf~~L~~~~-~e~v~~~~~iL~~~l~~~-~~~~-l   74 (503)
T PF10508_consen    6 NELLEELSSK--AERLEALPELKTELSS--SPFLERL----PEPVLFDCLNTSN-REQVELICDILKRLLSAL-SPDS-L   74 (503)
T ss_pred             HHHHHHHhcc--cchHHHHHHHHHHHhh--hhHHHhc----hHHHHHHHHhhcC-hHHHHHHHHHHHHHHhcc-CHHH-H
Confidence            3445555544  3345566666655443  1212222    2344788888776 777778888888887632 2222 2


Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCC
Q 009568          157 IDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ  236 (532)
Q Consensus       157 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~  236 (532)
                       ..++.+.|...|.++++.++..+++.|++++.++......+.+.++++.++.++ .+++..+...|+.+|..++...+.
T Consensus        75 -~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~~~  152 (503)
T PF10508_consen   75 -LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCL-RDPDLSVAKAAIKALKKLASHPEG  152 (503)
T ss_pred             -HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCchh
Confidence             446779999999999999999999999999988877778888899999999999 888999999999999999987654


Q ss_pred             CCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcC
Q 009568          237 PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG  316 (532)
Q Consensus       237 ~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~  316 (532)
                      .......+.++.|..++..+++.++..++.++.+++..+++....+.+.|+++.++..|.++|.-++..++.+|..++. 
T Consensus       153 ~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-  231 (503)
T PF10508_consen  153 LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-  231 (503)
T ss_pred             HHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-
Confidence            4444455668889999988888999999999999999999999999999999999999999888899999999999999 


Q ss_pred             CcchhHHHhhcCchHHHHHHhcCCCchh-----HHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHH
Q 009568          317 DDFQTQCIITYGALPYLLGLLTHSHKKS-----IKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEA  391 (532)
Q Consensus       317 ~~~~~~~~~~~~~l~~L~~lL~~~~~~~-----v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a  391 (532)
                      .+...+++.+.|+++.|..++.+.....     .--......++++...+..+.... ..++..+.+++.+.|+..+..|
T Consensus       232 ~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A  310 (503)
T PF10508_consen  232 TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVA  310 (503)
T ss_pred             ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHH
Confidence            6667889999999999999997652222     122334566777764444432222 2366677788888899999999


Q ss_pred             HHHHHHhhcCCCHHHHHHH-HHc-----CChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHH
Q 009568          392 AWAISNATSGGTHEQIKYL-VRE-----GCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLV  465 (532)
Q Consensus       392 ~~aL~nl~~~~~~~~~~~l-~~~-----~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~  465 (532)
                      ..+++.+++  +.+....| ...     .++..+.........+++..++.++.+++..++......    -.+.....+
T Consensus       311 ~dtlg~igs--t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~----i~~~~~~w~  384 (503)
T PF10508_consen  311 FDTLGQIGS--TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDND----ILSITESWY  384 (503)
T ss_pred             HHHHHHHhC--CHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHH----HHHHHHHHH
Confidence            999999986  55666665 332     245666666677888999999999999997665421100    001111222


Q ss_pred             HHhc--cHH-HHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009568          466 EEAE--GLE-KIENLQSHDNNEIYEKAVKILETYWLE  499 (532)
Q Consensus       466 ~~~g--~~~-~l~~L~~~~~~~v~~~a~~il~~~~~~  499 (532)
                      +..+  -.. .+..+...+=+|++-.+..++...+..
T Consensus       385 ~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~  421 (503)
T PF10508_consen  385 ESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQ  421 (503)
T ss_pred             HHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence            2222  222 666777788899999999999887764

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=5.3e-15  Score=139.01  Aligned_cols=388  Identities=16%  Similarity=0.152  Sum_probs=289.5

Q ss_pred             cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (532)
Q Consensus        75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  154 (532)
                      .+..+|++|..++.++.......|.++.-.  ...-..+.+.|++..|++++...+ ++++...+..+.|++. +...+.
T Consensus       305 iV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf--~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSF-D~glr~  380 (791)
T KOG1222|consen  305 IVAMLVKALDRSNSSLLTLVIKFLKKLSIF--DENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSF-DSGLRP  380 (791)
T ss_pred             HHHHHHHHHcccchHHHHHHHHHHHHhhhh--ccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhccc-cccccH
Confidence            467899999988888888788888877654  455667889999999999999998 9999999999999999 677889


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC
Q 009568          155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  234 (532)
Q Consensus       155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~  234 (532)
                      .++..|.+|.|..+|.+..  -...|+..+..++.+.. .+.++....+++.+++.+....+.++-...+....|||.+.
T Consensus       381 KMv~~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD~-~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnk  457 (791)
T KOG1222|consen  381 KMVNGGLLPHLASLLDSDT--KHGIALNMLYHLSCDDD-AKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNK  457 (791)
T ss_pred             HHhhccchHHHHHHhCCcc--cchhhhhhhhhhccCcH-HHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcc
Confidence            9999999999999997643  34557788888876654 67788888899999988767777777777777778999888


Q ss_pred             CCCCcccccchHHHHHHh-hcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCC-CCccchhhHHHHHHH
Q 009568          235 PQPPFDQVRPALPALAQL-VHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLIPALRTVGN  312 (532)
Q Consensus       235 ~~~~~~~~~~~l~~L~~l-L~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~al~~L~n  312 (532)
                      .+.+.......+..|+.. ++..|+-+.    ..+.+++.........++  ..+..|...+.. .+......++.+++|
T Consensus       458 RNaQlvceGqgL~~LM~ra~k~~D~lLm----K~vRniSqHeg~tqn~Fi--dyvgdLa~i~~nd~~E~F~~EClGtlan  531 (791)
T KOG1222|consen  458 RNAQLVCEGQGLDLLMERAIKSRDLLLM----KVVRNISQHEGATQNMFI--DYVGDLAGIAKNDNSESFGLECLGTLAN  531 (791)
T ss_pred             ccceEEecCcchHHHHHHHhcccchHHH----HHHHHhhhccchHHHHHH--HHHHHHHHHhhcCchHHHHHHHHHHHhh
Confidence            777777667777777654 455555432    345666655443333344  345566666654 456688899999999


Q ss_pred             hhcCCcchhHHHhhcCchHHHHHHhcCCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--chhHHH
Q 009568          313 IVTGDDFQTQCIITYGALPYLLGLLTHSH-KKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA--EFDIKK  389 (532)
Q Consensus       313 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~  389 (532)
                      +.-.+-...+.+-+.+++|.+-..|...- ..++.-.....++.++.. ..+...+..+++++.|+++|+..  +.++..
T Consensus       532 L~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~  610 (791)
T KOG1222|consen  532 LKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-LDCARLLAPAKLIDTLIELLQACQEDDEFVV  610 (791)
T ss_pred             cccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-hHHHHHhCccccHHHHHHHHHhhcccchHHH
Confidence            98866667777778899999999997542 245666777777777764 34444555789999999999875  678888


Q ss_pred             HHHHHHHHhhcCCCHHHHHHHH-HcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHh
Q 009568          390 EAAWAISNATSGGTHEQIKYLV-REGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEA  468 (532)
Q Consensus       390 ~a~~aL~nl~~~~~~~~~~~l~-~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (532)
                      ...+++..+..+  ...+..++ +...-..|++++.+.+.+++.+|-.+|.-+....+.+.+..      ..-.......
T Consensus       611 QiiyVF~Q~l~H--e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EWAKrI------~~EkFrwHNs  682 (791)
T KOG1222|consen  611 QIIYVFLQFLKH--ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEWAKRI------AGEKFRWHNS  682 (791)
T ss_pred             HHHHHHHHHHHH--HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHHHHHH------hhhhcccchh
Confidence            899999988875  23445555 44566789999999999999999999998888777664321      1112223456


Q ss_pred             ccHHHHHHHhcCCCHH
Q 009568          469 EGLEKIENLQSHDNNE  484 (532)
Q Consensus       469 g~~~~l~~L~~~~~~~  484 (532)
                      .+++.++.=|.++++.
T Consensus       683 QWLeMVEs~q~ddsEq  698 (791)
T KOG1222|consen  683 QWLEMVESQQRDDSEQ  698 (791)
T ss_pred             HHHHHHHHhhccchhh
Confidence            6777777766666554

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.73  E-value=1.1e-14  Score=131.10  Aligned_cols=318  Identities=18%  Similarity=0.215  Sum_probs=250.4

Q ss_pred             hCCcHHHHHHhh---cCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhC
Q 009568          115 QSGVVPRFVEFL---MREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAG  189 (532)
Q Consensus       115 ~~g~i~~Lv~lL---~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~  189 (532)
                      ..|..|.++..+   .+++ ..+...++.+|..+..+.|+    +.+..++..++.+|..  ++.++....+.++..-|.
T Consensus       102 ~~ga~~~~it~~~la~~~~-~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~  176 (461)
T KOG4199|consen  102 KNGAHDALITLLELAESPN-ESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACI  176 (461)
T ss_pred             cCCCcchhhhHHHHhhCCc-hhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence            445555555443   3444 78888999999998886665    5677788999998865  678888888889999888


Q ss_pred             CCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCC-Ccc---------cccchHHHHHHhhcCC-CH
Q 009568          190 DSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP-PFD---------QVRPALPALAQLVHSN-DE  258 (532)
Q Consensus       190 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~-~~~---------~~~~~l~~L~~lL~~~-d~  258 (532)
                      ..+.+|+.+++.++++.+...|.......+.+.++|++..|...+... .+.         ...+++..|+..++.. ||
T Consensus       177 ~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp  256 (461)
T KOG4199|consen  177 MHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDP  256 (461)
T ss_pred             HhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCc
Confidence            888899999999999999988866666689999999999998876322 111         1245677788888754 79


Q ss_pred             HHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCC-cc---chhhHHHHHHHhhcCCcchhHHHhhcCchHHHH
Q 009568          259 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS-PS---VLIPALRTVGNIVTGDDFQTQCIITYGALPYLL  334 (532)
Q Consensus       259 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~---v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~  334 (532)
                      .+...++.+|..++.. ++..+.+.+.|.+..++.++.+.+ ..   ....++..|..|+- ++.....+++.|+++.++
T Consensus       257 ~~L~~l~~tl~~lAVr-~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii  334 (461)
T KOG4199|consen  257 DSLVSLSTTLKALAVR-DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKII  334 (461)
T ss_pred             cHHHHHHHHHHHHHHH-HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHH
Confidence            9999999999999865 456688999999999999998843 33   44667888888874 666777899999999999


Q ss_pred             HHh-cCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--chhHHHHHHHHHHHhhcCCCHHHHHHHH
Q 009568          335 GLL-THSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA--EFDIKKEAAWAISNATSGGTHEQIKYLV  411 (532)
Q Consensus       335 ~lL-~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~  411 (532)
                      .++ .+..+|.|..+++.+++-++-..|++-..+++.|+-...++.|+..  ...++++|||++.|++.. +.+++..++
T Consensus       335 ~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~r-s~~~~~~~l  413 (461)
T KOG4199|consen  335 TLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVR-SAENRTILL  413 (461)
T ss_pred             HHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh-hhhccchHH
Confidence            887 3444899999999999999998899999999999999889988764  467999999999999987 446666666


Q ss_pred             HcCChHHHHhhcCCCCHHHHHHHHHHHHHH
Q 009568          412 REGCIKPLCDLFVCPDPRIVTVCLEGLENI  441 (532)
Q Consensus       412 ~~~~l~~L~~lL~~~d~~v~~~al~~L~~l  441 (532)
                      ..| ++.|+..-+..++.....+-.+|..+
T Consensus       414 ~~G-iE~Li~~A~~~h~tce~~akaALRDL  442 (461)
T KOG4199|consen  414 ANG-IEKLIRTAKANHETCEAAAKAALRDL  442 (461)
T ss_pred             hcc-HHHHHHHHHhcCccHHHHHHHHHHhc
Confidence            654 77888777777777666666666554

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.73  E-value=2e-15  Score=157.68  Aligned_cols=366  Identities=20%  Similarity=0.215  Sum_probs=278.0

Q ss_pred             ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCC--CHHHHHHHHHHHHHHhcCChh
Q 009568           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED--YPQLQFEAAWALTNIASGTSE  151 (532)
Q Consensus        74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~--~~~~~~~a~~~L~~l~~~~~~  151 (532)
                      +....++.++...|.+   .-.+.|..+.+.  ......+...|.+|.|+++|.-++  ..+.+..|-.+|.||....++
T Consensus       197 ets~sllsml~t~D~e---e~ar~fLemSss--~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD  271 (2195)
T KOG2122|consen  197 ETSNSLLSMLGTDDEE---EMARTFLEMSSS--PESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPD  271 (2195)
T ss_pred             hhhhHHhhhcccCCHH---HHHHHHHHhccC--chhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcc
Confidence            3444666666666653   445666666553  455667889999999999998554  267899999999999987776


Q ss_pred             hHHHHHhCCChHHHHHh----------hCC-----C---CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhh
Q 009568          152 NTKVVIDHGAVPIFVKL----------LAS-----P---SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE  213 (532)
Q Consensus       152 ~~~~i~~~g~i~~L~~l----------L~~-----~---~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~  213 (532)
                      ....-.+..++..|-++          +..     .   +..-...|+.+|..++ .+.++|...-+.|++..+-.++.-
T Consensus       272 ~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~S-FDEEhR~aM~ELG~LqAIaeLl~v  350 (2195)
T KOG2122|consen  272 EKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLS-FDEEHRHAMNELGGLQAIAELLQV  350 (2195)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhh-ccHHHHHHHHHhhhHHHHHHHHHH
Confidence            65544444444433321          111     1   1122235566666664 456689999999999999998731


Q ss_pred             -----------hhhhHHHHHHHHHhhhccCCCCC--CCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHH
Q 009568          214 -----------RAKLSMLRNATWTLSNFCRGKPQ--PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQ  280 (532)
Q Consensus       214 -----------~~~~~~~~~a~~~L~~L~~~~~~--~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~  280 (532)
                                 .....+++++..+|.||..++..  ...--..+++..++..|.+..+++..-....|.||+-..+...+
T Consensus       351 Dh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmK  430 (2195)
T KOG2122|consen  351 DHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMK  430 (2195)
T ss_pred             HHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHH
Confidence                       22457999999999999999732  23334589999999999998888988889999999977665555


Q ss_pred             HHH-HhCchHHHHHhh-CCCCccchhhHHHHHHHhhcCCcchhHHHh-hcCchHHHHHHhcCCC---chhHHHHHHHHHH
Q 009568          281 AVI-EAGVCPRLVELL-GHPSPSVLIPALRTVGNIVTGDDFQTQCII-TYGALPYLLGLLTHSH---KKSIKKEACWTIS  354 (532)
Q Consensus       281 ~~~-~~~~l~~L~~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~~~~-~~~~l~~L~~lL~~~~---~~~v~~~a~~~L~  354 (532)
                      .++ +.|-+-.|+... ..........++.+|+||+.+..+....+- -.|++.+|+.+|....   .-.+...|..+|.
T Consensus       431 kvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILR  510 (2195)
T KOG2122|consen  431 KVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILR  510 (2195)
T ss_pred             HHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHH
Confidence            554 557777777664 455667888999999999987765554443 3599999999997541   3467788888888


Q ss_pred             HHhc---CCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHH
Q 009568          355 NITA---GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIV  431 (532)
Q Consensus       355 nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~  431 (532)
                      |+..   .+.++.+.+.+++.+..|++.|++....+..++|.+|+||... +++..++|++.|++..|..++.+++..+.
T Consensus       511 NVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR-~p~DQq~LwD~gAv~mLrnLIhSKhkMIa  589 (2195)
T KOG2122|consen  511 NVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-SPEDQQMLWDDGAVPMLRNLIHSKHKMIA  589 (2195)
T ss_pred             HHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcC-CHHHHHHHHhcccHHHHHHHHhhhhhhhh
Confidence            8775   5678888888999999999999999999999999999999987 66778899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q 009568          432 TVCLEGLENILKVGE  446 (532)
Q Consensus       432 ~~al~~L~~l~~~~~  446 (532)
                      .-...+|.|++..-.
T Consensus       590 ~GSaaALrNLln~RP  604 (2195)
T KOG2122|consen  590 MGSAAALRNLLNFRP  604 (2195)
T ss_pred             hhHHHHHHHHhcCCc
Confidence            999999999998763

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.71  E-value=2e-15  Score=139.97  Aligned_cols=355  Identities=15%  Similarity=0.119  Sum_probs=259.1

Q ss_pred             CCChHHHHHHHHHHHHHhcCCC--CCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCCh
Q 009568           85 SDDSSLQLEATTQFRKLLSIER--SPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAV  162 (532)
Q Consensus        85 s~~~~~~~~a~~~l~~l~~~~~--~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i  162 (532)
                      ..+..+...+..++.+....+.  +.....-+..+++..|.+..++++ .++..++.++|+|+|..+.+.+..+.+.|+-
T Consensus        53 ~~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGa  131 (604)
T KOG4500|consen   53 TASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLGGA  131 (604)
T ss_pred             eccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcCCc
Confidence            3445566667777777764320  111223356788888999888887 8999999999999999999999999999998


Q ss_pred             HHHHHhhCC-------CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhh-hhhhhHHHHHHHHHhhhccCCC
Q 009568          163 PIFVKLLAS-------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN-ERAKLSMLRNATWTLSNFCRGK  234 (532)
Q Consensus       163 ~~L~~lL~~-------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~~~~~~a~~~L~~L~~~~  234 (532)
                      ..++.+|+.       .+.+....++..|.|..-++...+..+++.|+++.|...+- ...+....+.+.....||..-.
T Consensus       132 qivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~  211 (604)
T KOG4500|consen  132 QIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFV  211 (604)
T ss_pred             eehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHH
Confidence            888887764       23578888899999999999999999999999999988773 2334444444444333333221


Q ss_pred             --CCCCcccccchHHHHHHhhcCC-CHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCC-CCc-------cch
Q 009568          235 --PQPPFDQVRPALPALAQLVHSN-DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PSP-------SVL  303 (532)
Q Consensus       235 --~~~~~~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~-------~v~  303 (532)
                        ...++.....+...+++++.+. .+++.+-++..+.+.++++.-. -.+.+.|.+..++.+++. +..       ...
T Consensus       212 ~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vk-l~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~  290 (604)
T KOG4500|consen  212 CEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVK-LSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLF  290 (604)
T ss_pred             HHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCccee-eehhhcchHHHHHHHHHhcccccchHHHHHHH
Confidence              0122222344555666666543 5667777778888888765533 446777999999988865 222       233


Q ss_pred             hhHHHHHHHhhcCCcchhHHHhhcC-chHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc
Q 009568          304 IPALRTVGNIVTGDDFQTQCIITYG-ALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN  382 (532)
Q Consensus       304 ~~al~~L~nl~~~~~~~~~~~~~~~-~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~  382 (532)
                      ..++....-+..|++ ..+.+...+ ++..+...+.+. +......+..+++|+++.+.. .-.+++.+++..|+.++..
T Consensus       291 k~~~el~vllltGDe-SMq~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D~~-ci~~v~~~~~nkL~~~l~~  367 (604)
T KOG4500|consen  291 KRIAELDVLLLTGDE-SMQKLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARRDDI-CIQLVQKDFLNKLISCLMQ  367 (604)
T ss_pred             HhhhhHhhhhhcCch-HHHHHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhccchH-HHHHHHHHHHHHHHHHHHH
Confidence            445555555666665 344555555 899999999998 999999999999999987554 4578888999999999865


Q ss_pred             -----CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 009568          383 -----AEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGE  446 (532)
Q Consensus       383 -----~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~  446 (532)
                           ++.+++..++.||.|+....  .....+...|+.+.+...++...|.+....+..+..+....+
T Consensus       368 ~~~vdgnV~~qhA~lsALRnl~IPv--~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe  434 (604)
T KOG4500|consen  368 EKDVDGNVERQHACLSALRNLMIPV--SNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQE  434 (604)
T ss_pred             hcCCCccchhHHHHHHHHHhccccC--CchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchH
Confidence                 36678899999999998843  345667888999999999999999999888888887765544

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=4.3e-14  Score=146.85  Aligned_cols=362  Identities=17%  Similarity=0.145  Sum_probs=257.8

Q ss_pred             ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCh---
Q 009568           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTS---  150 (532)
Q Consensus        74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~---  150 (532)
                      +.++-+.+..+|+++..|..|+..|..+...-.+.....+-  .+.+.|.+.+.+++.+ ++..|+++++.++...+   
T Consensus       118 ell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~--~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~  194 (1075)
T KOG2171|consen  118 ELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLD--DLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNK  194 (1075)
T ss_pred             HHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHH--HHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccch
Confidence            46788888999999999999999999887642222111111  2677888888888844 99999999999987543   


Q ss_pred             hhHHHHHhCCChHHHHHhhC----CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhh-hhhhhHHHHHHHH
Q 009568          151 ENTKVVIDHGAVPIFVKLLA----SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN-ERAKLSMLRNATW  225 (532)
Q Consensus       151 ~~~~~i~~~g~i~~L~~lL~----~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~~~~~~a~~  225 (532)
                      .....+.  ..+|.++..+.    ..+......++.+|..++...+.+-...+. .++...+.+.. +.-+..++..|+.
T Consensus       195 ~~~~~~~--~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe  271 (1075)
T KOG2171|consen  195 SEVDKFR--DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRHLALE  271 (1075)
T ss_pred             HHHHHHH--HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHHHHHH
Confidence            3333333  45677776654    366777788999999998766654332222 13444445443 3347889999999


Q ss_pred             HhhhccCCCCC---CCcccccchHHHHHHhhcCC--C--------------HHHHHHHHHHHHHhccCChhHHHHHHHhC
Q 009568          226 TLSNFCRGKPQ---PPFDQVRPALPALAQLVHSN--D--------------EEVLTDACWALSYLSDGTNDKIQAVIEAG  286 (532)
Q Consensus       226 ~L~~L~~~~~~---~~~~~~~~~l~~L~~lL~~~--d--------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~  286 (532)
                      +|..+++..|.   ........+++.++.++...  |              ..--..|..+|-.++..-+..   .+-.-
T Consensus       272 ~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~---~v~p~  348 (1075)
T KOG2171|consen  272 FLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK---QVLPP  348 (1075)
T ss_pred             HHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChh---hehHH
Confidence            99999887421   12224566777777776421  1              112334555555555432211   11123


Q ss_pred             chHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 009568          287 VCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQA  366 (532)
Q Consensus       287 ~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~  366 (532)
                      +++.+-.++.+.+|.-|..++.+|+.++.|..+.....++ .+++.+++.|+++ +|.||..||.+++.++..-...++.
T Consensus       349 ~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~Dp-hprVr~AA~naigQ~stdl~p~iqk  426 (1075)
T KOG2171|consen  349 LFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDP-HPRVRYAALNAIGQMSTDLQPEIQK  426 (1075)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCC-CHHHHHHHHHHHHhhhhhhcHHHHH
Confidence            5666777789999999999999999999999877666555 7899999999999 9999999999999999876666777


Q ss_pred             HHHcCCHHHHHHHHhcC-chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChH-HHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 009568          367 VIDAGLVGPLVNLLQNA-EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIK-PLCDLFVCPDPRIVTVCLEGLENILKV  444 (532)
Q Consensus       367 l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~-~L~~lL~~~d~~v~~~al~~L~~l~~~  444 (532)
                      -...-++|.|+..+.+. +++|+..|+.++.|++..+....+...+. +++. .|..++.++.+.++..++.+|..+...
T Consensus       427 ~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd-~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~A  505 (1075)
T KOG2171|consen  427 KHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD-GLMEKKLLLLLQSSKPYVQEQAVTAIASVADA  505 (1075)
T ss_pred             HHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence            77677888999999886 78999999999999998876655443222 3555 444466678889999999999999887


Q ss_pred             hhh
Q 009568          445 GEA  447 (532)
Q Consensus       445 ~~~  447 (532)
                      .+.
T Consensus       506 A~~  508 (1075)
T KOG2171|consen  506 AQE  508 (1075)
T ss_pred             Hhh
Confidence            665

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.69  E-value=2.6e-14  Score=132.69  Aligned_cols=403  Identities=12%  Similarity=0.051  Sum_probs=294.4

Q ss_pred             ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCC------CCHHHHHHHHHHHHHHhc
Q 009568           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE------DYPQLQFEAAWALTNIAS  147 (532)
Q Consensus        74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~------~~~~~~~~a~~~L~~l~~  147 (532)
                      +.++.+.+...|++.++..+..++|.+++..+ ++.+..+.+.|+-..+++.|+.-      .+.+.-..+...|.|..-
T Consensus        87 ~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn-~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l  165 (604)
T KOG4500|consen   87 EALELLRQTPSSPDTEVHEQCFRALGNICYDN-NENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL  165 (604)
T ss_pred             HHHHHHHhCCCCCcccHHHHHHHHHhhhhccC-chhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence            45777888888999999999999999999864 77888888999977777777631      124566667788999999


Q ss_pred             CChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHHHhhhhhhhHHHHHHH
Q 009568          148 GTSENTKVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNERAKLSMLRNAT  224 (532)
Q Consensus       148 ~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~  224 (532)
                      ++.+.+..+.+.|+++.|...+.-  ++....+.+.....|+.+-- ....+...+......+++++.....+++...+.
T Consensus       166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f  245 (604)
T KOG4500|consen  166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF  245 (604)
T ss_pred             CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence            999999999999999999987754  67777777777777765422 223455566777888899997777889999999


Q ss_pred             HHhhhccCCCCCCCcccccchHHHHHHhhcC-CC-------HHHHHHHHHHHHHhccCChhHHHHHHHhC-chHHHHHhh
Q 009568          225 WTLSNFCRGKPQPPFDQVRPALPALAQLVHS-ND-------EEVLTDACWALSYLSDGTNDKIQAVIEAG-VCPRLVELL  295 (532)
Q Consensus       225 ~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~-~d-------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-~l~~L~~lL  295 (532)
                      ..|...+.++...-.....|.+..++.+++. .+       -.....++....-+..+++. .+.+...+ ++..+..++
T Consensus       246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeS-Mq~L~~~p~~l~~~~sw~  324 (604)
T KOG4500|consen  246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDES-MQKLHADPQFLDFLESWF  324 (604)
T ss_pred             HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchH-HHHHhcCcHHHHHHHHHh
Confidence            9999999887544455557788888888764 22       12233344444444445443 45566555 899999999


Q ss_pred             CCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCC----CchhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 009568          296 GHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS----HKKSIKKEACWTISNITAGNRDQIQAVIDAG  371 (532)
Q Consensus       296 ~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~  371 (532)
                      .+++......+..+|||++..++ ....+++.+++..|+.+|...    .+.+++..++.+|.|++..-+. ...++..|
T Consensus       325 ~S~d~~l~t~g~LaigNfaR~D~-~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~n-ka~~~~aG  402 (604)
T KOG4500|consen  325 RSDDSNLITMGSLAIGNFARRDD-ICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSN-KAHFAPAG  402 (604)
T ss_pred             cCCchhHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCc-hhhccccc
Confidence            99999999999999999999666 555788889999999999541    1557888999999999874332 45677899


Q ss_pred             CHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHH-HHHHHHHHHHHHHHhhhhhhh
Q 009568          372 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPR-IVTVCLEGLENILKVGEAEKN  450 (532)
Q Consensus       372 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~-v~~~al~~L~~l~~~~~~~~~  450 (532)
                      +.+.++..++...|.+...-...+.-+..+...-..+.......++.|++.-+++|.. +.--....+.-+++...    
T Consensus       403 vteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~----  478 (604)
T KOG4500|consen  403 VTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSK----  478 (604)
T ss_pred             hHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhH----
Confidence            9999999999999999998888887776643222222222335688888888888865 55555555555555431    


Q ss_pred             ccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHH
Q 009568          451 MGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVK  491 (532)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~  491 (532)
                             .....-.+-+.||++....+....+-..++.|.-
T Consensus       479 -------~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalV  512 (604)
T KOG4500|consen  479 -------YKDVILTVPKSGGIKEKVSMFTKNHINMQNEALV  512 (604)
T ss_pred             -------hhhhHhhccccccHHHHHHHHHHhhHHHhHHHHH
Confidence                   1123344556888888887776666666666543

>PRK09687 putative lyase; Provisional

Probab=99.68  E-value=6.5e-15  Score=137.53  Aligned_cols=255  Identities=15%  Similarity=0.147  Sum_probs=202.2

Q ss_pred             cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q 009568          118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL  197 (532)
Q Consensus       118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~  197 (532)
                      -++.|..+|.+.+ ..++..|+++|..+..           ..+++.+..++.++++.+|..++|+|+.+-.... .   
T Consensus        24 ~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~-~---   87 (280)
T PRK09687         24 NDDELFRLLDDHN-SLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR-C---   87 (280)
T ss_pred             cHHHHHHHHhCCC-HHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-c---
Confidence            5778899999888 8999999999988764           2346778888999999999999999999843221 1   


Q ss_pred             HHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChh
Q 009568          198 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTND  277 (532)
Q Consensus       198 ~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~  277 (532)
                        ....++.|..++..++++.++..++.+|++++......    ...+++.+...+.++++.|+..++++|+.+..    
T Consensus        88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~----  157 (280)
T PRK09687         88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND----  157 (280)
T ss_pred             --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC----
Confidence              11246677777557889999999999999997653212    23456677778888899999999999987642    


Q ss_pred             HHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHh
Q 009568          278 KIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT  357 (532)
Q Consensus       278 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~  357 (532)
                             ...++.|+.+|.++++.++..|+.+||.+..+++         .+++.|+.+|.+. ++.||..|++.|+.+-
T Consensus       158 -------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~~  220 (280)
T PRK09687        158 -------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLALRK  220 (280)
T ss_pred             -------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHccC
Confidence                   1468899999999999999999999999943333         4567899999988 9999999999999963


Q ss_pred             cCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcC-CCCHHHHHHHHH
Q 009568          358 AGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV-CPDPRIVTVCLE  436 (532)
Q Consensus       358 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-~~d~~v~~~al~  436 (532)
                        ++.         .+|.|+..+.+++  ++..|+.+|+++-.   +         ..++.|..+++ .+|+.++..+.+
T Consensus       221 --~~~---------av~~Li~~L~~~~--~~~~a~~ALg~ig~---~---------~a~p~L~~l~~~~~d~~v~~~a~~  275 (280)
T PRK09687        221 --DKR---------VLSVLIKELKKGT--VGDLIIEAAGELGD---K---------TLLPVLDTLLYKFDDNEIITKAID  275 (280)
T ss_pred             --Chh---------HHHHHHHHHcCCc--hHHHHHHHHHhcCC---H---------hHHHHHHHHHhhCCChhHHHHHHH
Confidence              332         6789999998765  77889999998854   2         26888888996 789999999998


Q ss_pred             HHHH
Q 009568          437 GLEN  440 (532)
Q Consensus       437 ~L~~  440 (532)
                      +|..
T Consensus       276 a~~~  279 (280)
T PRK09687        276 KLKR  279 (280)
T ss_pred             HHhc
Confidence            8764

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=5.6e-14  Score=132.21  Aligned_cols=379  Identities=19%  Similarity=0.135  Sum_probs=273.8

Q ss_pred             CChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHH
Q 009568           86 DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIF  165 (532)
Q Consensus        86 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L  165 (532)
                      ..+.+...|+..|.+++..  -..-..+...+++..||+.|...+ .++.......|..++- -.+++..+.+.|++..|
T Consensus       275 KQeqLLrva~ylLlNlAed--~~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL  350 (791)
T KOG1222|consen  275 KQEQLLRVAVYLLLNLAED--ISVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKL  350 (791)
T ss_pred             HHHHHHHHHHHHHHHHhhh--hhHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhh-hccchHHHHhccHHHHH
Confidence            3455566677888888753  344455778899999999999888 7888888889999887 56788889999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccch
Q 009568          166 VKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPA  245 (532)
Q Consensus       166 ~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~  245 (532)
                      ++++...+++++...+..+.|++.++. .|...+..|.+|.+..++..+...   ..|+-.+..++.++..........+
T Consensus       351 ~klfp~~h~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~l~~ll~~d~~~---~iA~~~lYh~S~dD~~K~MfayTdc  426 (791)
T KOG1222|consen  351 LKLFPIQHPDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPHLASLLDSDTKH---GIALNMLYHLSCDDDAKAMFAYTDC  426 (791)
T ss_pred             HHhcCCCCHHHHHHHHHHhhhcccccc-ccHHHhhccchHHHHHHhCCcccc---hhhhhhhhhhccCcHHHHHHHHHHH
Confidence            999999999999999999999987664 677888999999999999543332   3355566777776555555556788


Q ss_pred             HHHHHHhhcC-CCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhh-CCCCccchhhHHHHHHHhhcCCcchhHH
Q 009568          246 LPALAQLVHS-NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-GHPSPSVLIPALRTVGNIVTGDDFQTQC  323 (532)
Q Consensus       246 l~~L~~lL~~-~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~~  323 (532)
                      ++.+.+.+-. .+.+|-...+..-.|++.+.. +.+.+.+...+..|+..- ...++ .   -...+.|++.+.......
T Consensus       427 i~~lmk~v~~~~~~~vdl~lia~ciNl~lnkR-NaQlvceGqgL~~LM~ra~k~~D~-l---LmK~vRniSqHeg~tqn~  501 (791)
T KOG1222|consen  427 IKLLMKDVLSGTGSEVDLALIALCINLCLNKR-NAQLVCEGQGLDLLMERAIKSRDL-L---LMKVVRNISQHEGATQNM  501 (791)
T ss_pred             HHHHHHHHHhcCCceecHHHHHHHHHHHhccc-cceEEecCcchHHHHHHHhcccch-H---HHHHHHHhhhccchHHHH
Confidence            8888876644 455665555544556665433 235566656677666653 33332 2   346677888765433333


Q ss_pred             HhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--chhHHHHHHHHHHHhhcC
Q 009568          324 IITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA--EFDIKKEAAWAISNATSG  401 (532)
Q Consensus       324 ~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~  401 (532)
                      +++  .+.-|..+++...+...-.++..+++|++..+-+-.+.+-+.+++|.+-..|..+  ..+++.....+++.++..
T Consensus       502 Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d  579 (791)
T KOG1222|consen  502 FID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD  579 (791)
T ss_pred             HHH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh
Confidence            333  3455666666554677888999999999885555445555778999999999875  557788888888888763


Q ss_pred             CCHHHHHHHHHcCChHHHHhhcCC--CCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhc
Q 009568          402 GTHEQIKYLVREGCIKPLCDLFVC--PDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQS  479 (532)
Q Consensus       402 ~~~~~~~~l~~~~~l~~L~~lL~~--~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~  479 (532)
                        ......+...++++.|+++|+.  .|.+++..++-.+..++...-.             ..-++.+...-..+..|++
T Consensus       580 --~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~t-------------r~~miket~~~AylIDLMH  644 (791)
T KOG1222|consen  580 --LDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELT-------------RRLMIKETALGAYLIDLMH  644 (791)
T ss_pred             --hHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHH-------------HHHHHhhccchHHHHHHHh
Confidence              3444555678999999999984  6777877788877777765222             2445677777788999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 009568          480 HDNNEIYEKAVKILE  494 (532)
Q Consensus       480 ~~~~~v~~~a~~il~  494 (532)
                      +.|.+|++-+...++
T Consensus       645 DkN~eiRkVCDn~Ld  659 (791)
T KOG1222|consen  645 DKNAEIRKVCDNALD  659 (791)
T ss_pred             cccHHHHHHHHHHHH
Confidence            999998877655444

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.67  E-value=4.7e-14  Score=127.05  Aligned_cols=309  Identities=12%  Similarity=0.136  Sum_probs=246.4

Q ss_pred             CCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhCCChH
Q 009568           85 SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-YPQLQFEAAWALTNIASGTSENTKVVIDHGAVP  163 (532)
Q Consensus        85 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~  163 (532)
                      +++..+.++++.+|..+..+.  |   .+.+..++..++.+|.... +.++....+.++..-+.+++.+++.+++.++++
T Consensus       118 ~~~~~~l~ksL~al~~lt~~q--p---dl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~  192 (461)
T KOG4199|consen  118 SPNESVLKKSLEAINSLTHKQ--P---DLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILE  192 (461)
T ss_pred             CCchhHHHHHHHHHHHhhcCC--c---chhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Confidence            566667777777777776542  1   2456678888899887432 368888888999999988999999999999999


Q ss_pred             HHHHhhCC-CCHHHHHHHHHHHHHhhCCCc---------hhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCC
Q 009568          164 IFVKLLAS-PSDDVREQAVWALGNVAGDSP---------RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG  233 (532)
Q Consensus       164 ~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~---------~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~  233 (532)
                      .+.+.|.. ....+.+.+.|++.-+..+..         .....+...|++..|+..+.-..++.++..++.+|..|+-.
T Consensus       193 Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr  272 (461)
T KOG4199|consen  193 LILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR  272 (461)
T ss_pred             HHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence            99987765 444577788999998876542         23456778888999999997677899999999999999877


Q ss_pred             CCCCCcccccchHHHHHHhhcCC-CHH---HHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCC--CCccchhhHH
Q 009568          234 KPQPPFDQVRPALPALAQLVHSN-DEE---VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH--PSPSVLIPAL  307 (532)
Q Consensus       234 ~~~~~~~~~~~~l~~L~~lL~~~-d~~---v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~al  307 (532)
                      +.........|++..|++++.+. +..   ....+|..|..++.+ ++....+++.|+.+.++.++..  .+|.+...++
T Consensus       273 ~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~-DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~  351 (461)
T KOG4199|consen  273 DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGS-DSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVM  351 (461)
T ss_pred             HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCC-CchHHHHHHhcChHHHHHHHHHcCCChHHHHHHH
Confidence            65556666789999999999874 333   445677777777754 4456889999999999998743  6788999999


Q ss_pred             HHHHHhhcCCcchhHHHhhcCchHHHHHHhcC-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchh
Q 009568          308 RTVGNIVTGDDFQTQCIITYGALPYLLGLLTH-SHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFD  386 (532)
Q Consensus       308 ~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~  386 (532)
                      .+++-|+-..+++...+++.|+-...++.|+. +....+++.|||.+.|++..+.++...++.. .++.|+..-...++.
T Consensus       352 a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~-GiE~Li~~A~~~h~t  430 (461)
T KOG4199|consen  352 AIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLAN-GIEKLIRTAKANHET  430 (461)
T ss_pred             HHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhc-cHHHHHHHHHhcCcc
Confidence            99999999999999999999999999999964 3356899999999999999888887777766 568888888888888


Q ss_pred             HHHHHHHHHHHhhc
Q 009568          387 IKKEAAWAISNATS  400 (532)
Q Consensus       387 v~~~a~~aL~nl~~  400 (532)
                      .+..|-.||..+-.
T Consensus       431 ce~~akaALRDLGc  444 (461)
T KOG4199|consen  431 CEAAAKAALRDLGC  444 (461)
T ss_pred             HHHHHHHHHHhcCc
Confidence            88888888887744

>PRK09687 putative lyase; Provisional

Probab=99.67  E-value=2.3e-14  Score=133.88  Aligned_cols=254  Identities=16%  Similarity=0.114  Sum_probs=200.5

Q ss_pred             cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (532)
Q Consensus        75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  154 (532)
                      .++.|+..|.+++..++..|+..|..+-..            .+++.+..++.+++ +.+|..|+++|+.+......   
T Consensus        24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~~------------~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~~~~~---   87 (280)
T PRK09687         24 NDDELFRLLDDHNSLKRISSIRVLQLRGGQ------------DVFRLAIELCSSKN-PIERDIGADILSQLGMAKRC---   87 (280)
T ss_pred             cHHHHHHHHhCCCHHHHHHHHHHHHhcCcc------------hHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCccc---
Confidence            467899999999999999999999887532            26788899988888 99999999999998752211   


Q ss_pred             HHHhCCChHHHHHh-hCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCC
Q 009568          155 VVIDHGAVPIFVKL-LASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG  233 (532)
Q Consensus       155 ~i~~~g~i~~L~~l-L~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~  233 (532)
                         ...+++.|..+ +.++++.|+..++.+|++++......     ...++..+...+ .+.+..++..++++|..+.. 
T Consensus        88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~-  157 (280)
T PRK09687         88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITA-FDKSTNVRFAVAFALSVIND-  157 (280)
T ss_pred             ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHh-hCCCHHHHHHHHHHHhccCC-
Confidence               11346777776 67789999999999999996443211     011344455555 66688999999999976643 


Q ss_pred             CCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHh
Q 009568          234 KPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI  313 (532)
Q Consensus       234 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl  313 (532)
                               ...++.|+.++.++++.|+..++.+|+.+....+         .+++.|+..|.+.++.++..|++.|+.+
T Consensus       158 ---------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~  219 (280)
T PRK09687        158 ---------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLALR  219 (280)
T ss_pred             ---------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence                     3588999999999999999999999999843333         4567899999999999999999999985


Q ss_pred             hcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHh-cCchhHHHHHH
Q 009568          314 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQ-NAEFDIKKEAA  392 (532)
Q Consensus       314 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~  392 (532)
                      -.  +         .++|.|+..|.++ +  ++..++.+|+++..  +.         .+|.|..++. ..|..++..|.
T Consensus       220 ~~--~---------~av~~Li~~L~~~-~--~~~~a~~ALg~ig~--~~---------a~p~L~~l~~~~~d~~v~~~a~  274 (280)
T PRK09687        220 KD--K---------RVLSVLIKELKKG-T--VGDLIIEAAGELGD--KT---------LLPVLDTLLYKFDDNEIITKAI  274 (280)
T ss_pred             CC--h---------hHHHHHHHHHcCC-c--hHHHHHHHHHhcCC--Hh---------HHHHHHHHHhhCCChhHHHHHH
Confidence            42  2         5688999999876 4  78899999999853  33         6788999997 67999999999


Q ss_pred             HHHHH
Q 009568          393 WAISN  397 (532)
Q Consensus       393 ~aL~n  397 (532)
                      ++|..
T Consensus       275 ~a~~~  279 (280)
T PRK09687        275 DKLKR  279 (280)
T ss_pred             HHHhc
Confidence            98853

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.62  E-value=6.7e-14  Score=146.52  Aligned_cols=328  Identities=20%  Similarity=0.179  Sum_probs=245.1

Q ss_pred             hhhccHHHHHhhhcCCC---hHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHH----------hhcCC------CC
Q 009568           71 TKLESLPAMVAGVWSDD---SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVE----------FLMRE------DY  131 (532)
Q Consensus        71 ~~~~~l~~lv~~L~s~~---~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~----------lL~~~------~~  131 (532)
                      ...+.|+-+++.|+-++   .+.+..|-.+|.+++.... +....-.+..+++.|-+          ++...      ..
T Consensus       232 R~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqP-D~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~  310 (2195)
T KOG2122|consen  232 RRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQP-DEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPAS  310 (2195)
T ss_pred             HhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCc-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcc
Confidence            34478999999999654   4678889999999987642 22111112223333322          22211      11


Q ss_pred             HHHHH-HHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC------------CCHHHHHHHHHHHHHhhCCCchhHH-H
Q 009568          132 PQLQF-EAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS------------PSDDVREQAVWALGNVAGDSPRCRD-L  197 (532)
Q Consensus       132 ~~~~~-~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~------------~~~~v~~~a~~~L~nl~~~~~~~~~-~  197 (532)
                      .+-+. .|+..|.+++. +++++..+.+.|++.++-.++.-            .+..+|..+..+|.||.......+. .
T Consensus       311 ~~H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~L  389 (2195)
T KOG2122|consen  311 DEHQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATL  389 (2195)
T ss_pred             cchhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhh
Confidence            24455 67778888888 89999999999999999887742            2467999999999999865554444 4


Q ss_pred             HHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCccc--ccchHHHHHH-hhcCCCHHHHHHHHHHHHHhccC
Q 009568          198 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQ--VRPALPALAQ-LVHSNDEEVLTDACWALSYLSDG  274 (532)
Q Consensus       198 ~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~--~~~~l~~L~~-lL~~~d~~v~~~a~~~L~~l~~~  274 (532)
                      +-..|++..++..| .+...++......+|.||+..........  ..+-+..|+. .++...+..+..++.+|+||+..
T Consensus       390 Cs~rgfMeavVAQL-~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAH  468 (2195)
T KOG2122|consen  390 CSQRGFMEAVVAQL-ISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAH  468 (2195)
T ss_pred             hhhhhHHHHHHHHH-hcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhc
Confidence            55678999999999 66667888889999999997753222222  2344444443 45566777888999999999977


Q ss_pred             ChhHHHHHH-HhCchHHHHHhhCCCC----ccchhhHHHHHHHhh---cCCcchhHHHhhcCchHHHHHHhcCCCchhHH
Q 009568          275 TNDKIQAVI-EAGVCPRLVELLGHPS----PSVLIPALRTVGNIV---TGDDFQTQCIITYGALPYLLGLLTHSHKKSIK  346 (532)
Q Consensus       275 ~~~~~~~~~-~~~~l~~L~~lL~~~~----~~v~~~al~~L~nl~---~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~  346 (532)
                      +.++...+. -.|.+..|+.+|....    ..+...+-.+|.|.+   ...+.+++.+.++++|..|+..|++. +-.+.
T Consensus       469 cteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~-SLTiV  547 (2195)
T KOG2122|consen  469 CTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH-SLTIV  547 (2195)
T ss_pred             ccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc-ceEEe
Confidence            666555554 3488999999998752    345666666666654   44567888899999999999999998 99999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCC
Q 009568          347 KEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGG  402 (532)
Q Consensus       347 ~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~  402 (532)
                      .++|.+|+||.+.+++..+.+++.|.++.|..++.+++..+..-++.+|.|+...-
T Consensus       548 SNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  548 SNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             ecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence            99999999999999998899999999999999999999999999999999998654

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.62  E-value=6.7e-15  Score=143.32  Aligned_cols=357  Identities=17%  Similarity=0.212  Sum_probs=228.5

Q ss_pred             ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCc-hhH-h---hhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC
Q 009568           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPP-IEE-V---IQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASG  148 (532)
Q Consensus        74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~-~~~-~---i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~  148 (532)
                      +.+|.|.++|.+++...+.-|..+|.++....  .. .+. +   .-.-.+|.|+++.++++ |.+|..|+.|+..+.-.
T Consensus       128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDs--a~~lds~~~~rpl~~mipkfl~f~~h~s-pkiRs~A~~cvNq~i~~  204 (885)
T KOG2023|consen  128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDS--AQFLDSDVLTRPLNIMIPKFLQFFKHPS-PKIRSHAVGCVNQFIII  204 (885)
T ss_pred             hHHHHHHHHhcCCcccccchhHHHHHHHHhhh--HHHHhhhcccCchHHhHHHHHHHHhCCC-hhHHHHHHhhhhheeec
Confidence            57899999999999888899999999998642  11 111 0   01236899999999998 99999999999987763


Q ss_pred             ChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhh
Q 009568          149 TSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLS  228 (532)
Q Consensus       149 ~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~  228 (532)
                      .+.....-++ .+++.+..+-.+++++||.+.+.++..+....+. +-.-.-.++++.++... ++.|+.+.-.||..+.
T Consensus       205 ~~qal~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d-kl~phl~~IveyML~~t-qd~dE~VALEACEFwl  281 (885)
T KOG2023|consen  205 QTQALYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEVRPD-KLVPHLDNIVEYMLQRT-QDVDENVALEACEFWL  281 (885)
T ss_pred             CcHHHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH-hcccchHHHHHHHHHHc-cCcchhHHHHHHHHHH
Confidence            3333222222 4566777777779999999999999998754432 11111123455555555 6778889999999999


Q ss_pred             hccCCCCCC--CcccccchHHHHHHhhcCCCHHH--HH------------------------------------------
Q 009568          229 NFCRGKPQP--PFDQVRPALPALAQLVHSNDEEV--LT------------------------------------------  262 (532)
Q Consensus       229 ~L~~~~~~~--~~~~~~~~l~~L~~lL~~~d~~v--~~------------------------------------------  262 (532)
                      .++..+-..  -......++|.|+.-+..++.++  ..                                          
T Consensus       282 a~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~D  361 (885)
T KOG2023|consen  282 ALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDD  361 (885)
T ss_pred             HHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccc
Confidence            999885111  11233556666654332111000  00                                          


Q ss_pred             ----HHHHHHHHhccCChhHHHHHHHhCchH----HHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhc--CchHH
Q 009568          263 ----DACWALSYLSDGTNDKIQAVIEAGVCP----RLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITY--GALPY  332 (532)
Q Consensus       263 ----~a~~~L~~l~~~~~~~~~~~~~~~~l~----~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~--~~l~~  332 (532)
                          ..-|-|...+...-+....+....+++    .|-..|.++++.+++.++.++|.|+.|.-   +.++.+  .++|.
T Consensus       362 DdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM---~g~~p~LpeLip~  438 (885)
T KOG2023|consen  362 DDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCM---QGFVPHLPELIPF  438 (885)
T ss_pred             cccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHh---hhcccchHHHHHH
Confidence                001223222222222222333344444    45555677899999999999999998753   223332  47899


Q ss_pred             HHHHhcCCCchhHHHHHHHHHHHHhcC--CHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHH
Q 009568          333 LLGLLTHSHKKSIKKEACWTISNITAG--NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYL  410 (532)
Q Consensus       333 L~~lL~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l  410 (532)
                      ++.+|.+. .+-||.-.||+|+..+..  ... .+..+.. ++..|++.+-+++.+|++.||.|+..+-.....+.++++
T Consensus       439 l~~~L~DK-kplVRsITCWTLsRys~wv~~~~-~~~~f~p-vL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l  515 (885)
T KOG2023|consen  439 LLSLLDDK-KPLVRSITCWTLSRYSKWVVQDS-RDEYFKP-VLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYL  515 (885)
T ss_pred             HHHHhccC-ccceeeeeeeeHhhhhhhHhcCC-hHhhhHH-HHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHH
Confidence            99999998 999999999999998751  111 1122221 445566666678899999999999999887776766664


Q ss_pred             HHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 009568          411 VREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV  444 (532)
Q Consensus       411 ~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~  444 (532)
                      -.  ++..|+..+..-..+-.....+++..+...
T Consensus       516 ~~--IL~~l~~af~kYQ~KNLlILYDAIgtlAds  547 (885)
T KOG2023|consen  516 EY--ILDQLVFAFGKYQKKNLLILYDAIGTLADS  547 (885)
T ss_pred             HH--HHHHHHHHHHHHhhcceehHHHHHHHHHHH
Confidence            33  556666555532323233344555555443

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=1.6e-12  Score=135.45  Aligned_cols=392  Identities=15%  Similarity=0.145  Sum_probs=280.3

Q ss_pred             HHHHhhhcCC-ChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 009568           77 PAMVAGVWSD-DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV  155 (532)
Q Consensus        77 ~~lv~~L~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  155 (532)
                      ..++..+.+. .+.++..-+..+..+++.. -+.    -..++++.|.+..++++ +..|+.|+.+|+.+...-...-..
T Consensus        82 s~lL~~~~~E~~~~vr~k~~dviAeia~~~-l~e----~WPell~~L~q~~~S~~-~~~rE~al~il~s~~~~~~~~~~~  155 (1075)
T KOG2171|consen   82 SSLLEIIQSETEPSVRHKLADVIAEIARND-LPE----KWPELLQFLFQSTKSPN-PSLRESALLILSSLPETFGNTLQP  155 (1075)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHHHhc-ccc----chHHHHHHHHHHhcCCC-cchhHHHHHHHHhhhhhhccccch
Confidence            4556666654 4678888888888888764 121    34568889999999998 999999999999998732222111


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc---hhHHHHHhcCChHHHHHHhh---hhhhhHHHHHHHHHhhh
Q 009568          156 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP---RCRDLVLSQGALIPLLAQLN---ERAKLSMLRNATWTLSN  229 (532)
Q Consensus       156 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~---~~~~~~~~~~~l~~L~~ll~---~~~~~~~~~~a~~~L~~  229 (532)
                      .+ ..+.+.+.+.+.+++..+|..++++++.++...+   ..++.+.  ..+|.++..+.   +..+......+..+|..
T Consensus       156 ~~-~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~--~llP~~l~vl~~~i~~~d~~~a~~~l~~l~E  232 (1075)
T KOG2171|consen  156 HL-DDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFR--DLLPSLLNVLQEVIQDGDDDAAKSALEALIE  232 (1075)
T ss_pred             hH-HHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHH--HHhHHHHHHhHhhhhccchHHHHHHHHHHHH
Confidence            11 0234555566666666699999999999885442   2223222  24666666663   34466677888888888


Q ss_pred             ccCCCCCCCcccccchHHHHHHhhcCC--CHHHHHHHHHHHHHhccCChhHHHHH--HHhCchHHHHHhhCCC--C----
Q 009568          230 FCRGKPQPPFDQVRPALPALAQLVHSN--DEEVLTDACWALSYLSDGTNDKIQAV--IEAGVCPRLVELLGHP--S----  299 (532)
Q Consensus       230 L~~~~~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~l~~~~~~~~~~~--~~~~~l~~L~~lL~~~--~----  299 (532)
                      |....|..-......++.....+..+.  ++.++..|+..|..++...+...+..  +-..+++.++.++...  +    
T Consensus       233 l~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~  312 (1075)
T KOG2171|consen  233 LLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWS  312 (1075)
T ss_pred             HHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhc
Confidence            888765555555566777777777655  78899999999999988755433322  2234566666665431  1    


Q ss_pred             ----------ccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009568          300 ----------PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID  369 (532)
Q Consensus       300 ----------~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~  369 (532)
                                ......|.++|-.++.+-+..   .+-.-+++.+..++.+. ++.-|+.|..+|+-++.|+++.+...++
T Consensus       313 ~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~---~v~p~~~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc~~~m~~~l~  388 (1075)
T KOG2171|consen  313 NEDDLDEDDEETPYRAAEQALDRLALHLGGK---QVLPPLFEALEAMLQST-EWKERHAALLALSVIAEGCSDVMIGNLP  388 (1075)
T ss_pred             cccccccccccCcHHHHHHHHHHHHhcCChh---hehHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence                      124556777787777654421   11224567788888998 9999999999999999999998888765


Q ss_pred             cCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCC-CHHHHHHHHHHHHHHHHhhhhh
Q 009568          370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCP-DPRIVTVCLEGLENILKVGEAE  448 (532)
Q Consensus       370 ~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~-d~~v~~~al~~L~~l~~~~~~~  448 (532)
                      . +++.++..+.++++.||..|+.|++.++..-.++..++ ....+++.|+..+++. ++++...+..++-+++....+.
T Consensus       389 ~-Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~-~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~  466 (1075)
T KOG2171|consen  389 K-ILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKK-HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKS  466 (1075)
T ss_pred             H-HHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHH-HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHH
Confidence            4 89999999999999999999999999998766665444 4556788999988864 5689999999999999877664


Q ss_pred             hhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHH
Q 009568          449 KNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILET  495 (532)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~  495 (532)
                              ...+|...+.+.    ++..|..++.+.+++.+...|..
T Consensus       467 --------~l~pYLd~lm~~----~l~~L~~~~~~~v~e~vvtaIas  501 (1075)
T KOG2171|consen  467 --------ILEPYLDGLMEK----KLLLLLQSSKPYVQEQAVTAIAS  501 (1075)
T ss_pred             --------HHHHHHHHHHHH----HHHHHhcCCchhHHHHHHHHHHH
Confidence                    466777776533    78888899999999888776643

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.61  E-value=4.8e-13  Score=145.95  Aligned_cols=274  Identities=19%  Similarity=0.200  Sum_probs=219.6

Q ss_pred             cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (532)
Q Consensus        75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  154 (532)
                      .++.|+..|.++++.+|..|+..|..+..            .+.++.|+..|.+++ +.++..|+.+|..+....     
T Consensus       622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~-----  683 (897)
T PRK13800        622 SVAELAPYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALGDGA-AAVRRAAAEGLRELVEVL-----  683 (897)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhcc-----
Confidence            56889999999999999999999988753            237899999998888 999999999998885411     


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC
Q 009568          155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  234 (532)
Q Consensus       155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~  234 (532)
                           ...+.|...|.++++.+|..++.+|+.+....            ...++..| .+.++.++..++++|..+-.  
T Consensus       684 -----~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L-~D~d~~VR~~Av~aL~~~~~--  743 (897)
T PRK13800        684 -----PPAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAAL-GDPDHRVRIEAVRALVSVDD--  743 (897)
T ss_pred             -----CchHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHh-cCCCHHHHHHHHHHHhcccC--
Confidence                 12367788888899999999999999874221            23466677 78899999999999987622  


Q ss_pred             CCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhh
Q 009568          235 PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV  314 (532)
Q Consensus       235 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~  314 (532)
                                 .+.|..++.++++.|+..++.+|+.+.....         ..++.|..++.++++.++..|+.+|+.+.
T Consensus       744 -----------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g  803 (897)
T PRK13800        744 -----------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAELG  803 (897)
T ss_pred             -----------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence                       1456788999999999999999998865322         23678889999999999999999999885


Q ss_pred             cCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHH
Q 009568          315 TGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWA  394 (532)
Q Consensus       315 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a  394 (532)
                      ...          .+.+.+...|.++ ++.||..|+++|+.+..  ++         .++.|+.+|.+++..||..|+++
T Consensus       804 ~~~----------~~~~~l~~aL~d~-d~~VR~~Aa~aL~~l~~--~~---------a~~~L~~~L~D~~~~VR~~A~~a  861 (897)
T PRK13800        804 CPP----------DDVAAATAALRAS-AWQVRQGAARALAGAAA--DV---------AVPALVEALTDPHLDVRKAAVLA  861 (897)
T ss_pred             Ccc----------hhHHHHHHHhcCC-ChHHHHHHHHHHHhccc--cc---------hHHHHHHHhcCCCHHHHHHHHHH
Confidence            421          1235688889888 99999999999998742  22         45889999999999999999999


Q ss_pred             HHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHH
Q 009568          395 ISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLE  439 (532)
Q Consensus       395 L~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~  439 (532)
                      |..+.  +++.         ..+.|...+++.|+.|+..+..+|.
T Consensus       862 L~~~~--~~~~---------a~~~L~~al~D~d~~Vr~~A~~aL~  895 (897)
T PRK13800        862 LTRWP--GDPA---------ARDALTTALTDSDADVRAYARRALA  895 (897)
T ss_pred             HhccC--CCHH---------HHHHHHHHHhCCCHHHHHHHHHHHh
Confidence            99972  2332         3667778899999999999999875

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.59  E-value=3.8e-12  Score=124.84  Aligned_cols=405  Identities=16%  Similarity=0.095  Sum_probs=270.9

Q ss_pred             HHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCChhhHHHHH
Q 009568           79 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-YPQLQFEAAWALTNIASGTSENTKVVI  157 (532)
Q Consensus        79 lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~  157 (532)
                      ++..+...+++....|..-..+++.+. +++-..+++.|.+|.++.++...+ .++++.+.+.++...+.+.......++
T Consensus        14 ~l~~L~~~dpe~lvrai~~~kN~vig~-~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL   92 (678)
T KOG1293|consen   14 LLYRLLHLDPEQLVRAIYMSKNLVIGF-TDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVL   92 (678)
T ss_pred             HHHhhhcCCHHHHHHHHHHhcchhhcC-CCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHH
Confidence            344555677888888999999998874 455556899999999999998654 367777777788888888889999999


Q ss_pred             hCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchhH--HHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC
Q 009568          158 DHGAVPIFVKLLASPS-DDVREQAVWALGNVAGDSPRCR--DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  234 (532)
Q Consensus       158 ~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~~--~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~  234 (532)
                      +.+.++.|+++|.+++ ..+++.++.++.++....+..-  .......++..+..++ ..+...+...-+...+++|...
T Consensus        93 ~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~-s~~lk~~~~l~~~~~a~~s~~~  171 (678)
T KOG1293|consen   93 RIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLY-SIELKYISRLDVSRAAHLSSTK  171 (678)
T ss_pred             HHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH-hhhhhhhhhhhhhhhccccccc
Confidence            9999999999999988 8899999999999987664321  1111222333333333 2244445555566666777665


Q ss_pred             CCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHH---HhccCChhHHH----HHHHhCchH--HHHHhhCCCCccchhh
Q 009568          235 PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALS---YLSDGTNDKIQ----AVIEAGVCP--RLVELLGHPSPSVLIP  305 (532)
Q Consensus       235 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~---~l~~~~~~~~~----~~~~~~~l~--~L~~lL~~~~~~v~~~  305 (532)
                      .........++...+.-++......++..++.+++   ++..+++....    ...+.|+.+  .+..++.+++...+..
T Consensus       172 ~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~  251 (678)
T KOG1293|consen  172 DHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLR  251 (678)
T ss_pred             hhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHH
Confidence            44444445666677766666667788999999998   66655543322    233446665  3445556666666666


Q ss_pred             HHHHHHHhhcCCc-------------chhHHH--------------------------------------hhcCchHHHH
Q 009568          306 ALRTVGNIVTGDD-------------FQTQCI--------------------------------------ITYGALPYLL  334 (532)
Q Consensus       306 al~~L~nl~~~~~-------------~~~~~~--------------------------------------~~~~~l~~L~  334 (532)
                      ++.++.++...+.             .....+                                      .+...++...
T Consensus       252 sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~  331 (678)
T KOG1293|consen  252 SLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTT  331 (678)
T ss_pred             HHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHH
Confidence            6666666654330             000000                                      0000111111


Q ss_pred             HHhc----------------------------------------------------CCCchhHHHHHHHHHHHHhcCCHH
Q 009568          335 GLLT----------------------------------------------------HSHKKSIKKEACWTISNITAGNRD  362 (532)
Q Consensus       335 ~lL~----------------------------------------------------~~~~~~v~~~a~~~L~nl~~~~~~  362 (532)
                      +++.                                                    .. +..++..||-++-+++..-..
T Consensus       332 ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~k-d~~~~aaa~l~~~s~srsV~a  410 (678)
T KOG1293|consen  332 ELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIK-DHDFVAAALLCLKSFSRSVSA  410 (678)
T ss_pred             HHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccc-cHHHHHHHHHHHHHHHHHHHH
Confidence            1110                                                    11 334455555555555542111


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 009568          363 QIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENIL  442 (532)
Q Consensus       363 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~  442 (532)
                      ....+-...+..+|++++..++..|+..+..+|+|++..-+ .....++..|+++.+..++.++|+.++..++|+|.+++
T Consensus       411 L~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs-~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~  489 (678)
T KOG1293|consen  411 LRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS-NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLM  489 (678)
T ss_pred             HHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc-cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence            11122235578899999999999999999999999998544 34567788999999999999999999999999999998


Q ss_pred             HhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009568          443 KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLE  499 (532)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~  499 (532)
                      -.++....       ...++. +    +-..|..+.++++..|++.|..++.++...
T Consensus       490 f~~de~~k-------~~~~~k-i----~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~  534 (678)
T KOG1293|consen  490 FNCDEEEK-------FQLLAK-I----PANLILDLINDPDWAVQEQCFQLLRNLTCN  534 (678)
T ss_pred             hcchHHHH-------HHHHHH-h----hHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence            65544321       111222 2    246678889999999999999999998765

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=3e-13  Score=132.04  Aligned_cols=318  Identities=14%  Similarity=0.173  Sum_probs=223.6

Q ss_pred             CCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh----CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 009568          116 SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID----HGAVPIFVKLLASPSDDVREQAVWALGNVAGDS  191 (532)
Q Consensus       116 ~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~----~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~  191 (532)
                      ..++|.|+++|.+++ ...+..|..+|.+|+.++++..+.-+.    .-.+|.++++.+++++.+|..|+.++..+....
T Consensus       127 pelLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~  205 (885)
T KOG2023|consen  127 PELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ  205 (885)
T ss_pred             hhHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecC
Confidence            358999999999998 789999999999999977665544222    135799999999999999999999999887554


Q ss_pred             chhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 009568          192 PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYL  271 (532)
Q Consensus       192 ~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l  271 (532)
                      +..-..-+ ..++..+..+- .+.++++++++|.++..|....+..-.....+++.+++...++.|++|...||.....+
T Consensus       206 ~qal~~~i-D~Fle~lFala-nD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~  283 (885)
T KOG2023|consen  206 TQALYVHI-DKFLEILFALA-NDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLAL  283 (885)
T ss_pred             cHHHHHHH-HHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHH
Confidence            43211111 12455555555 78899999999999999999887777777889999999999999999999999999988


Q ss_pred             ccCCh--hHHHHHHHhCchHHHHHhhCCC---------------------------------------------------
Q 009568          272 SDGTN--DKIQAVIEAGVCPRLVELLGHP---------------------------------------------------  298 (532)
Q Consensus       272 ~~~~~--~~~~~~~~~~~l~~L~~lL~~~---------------------------------------------------  298 (532)
                      +..+.  +.....++ .++|.|+.-+...                                                   
T Consensus       284 aeqpi~~~~L~p~l~-kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DD  362 (885)
T KOG2023|consen  284 AEQPICKEVLQPYLD-KLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDD  362 (885)
T ss_pred             hcCcCcHHHHHHHHH-HHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccc
Confidence            87652  11111111 4555555433211                                                   


Q ss_pred             -----CccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCH
Q 009568          299 -----SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLV  373 (532)
Q Consensus       299 -----~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i  373 (532)
                           ++.+|..+..+|.-++.-..   +.++. .++|.|-..|.+. ...+|+.+..++|.++.|.-...-.-+- .++
T Consensus       363 dD~~~dWNLRkCSAAaLDVLanvf~---~elL~-~l~PlLk~~L~~~-~W~vrEagvLAlGAIAEGcM~g~~p~Lp-eLi  436 (885)
T KOG2023|consen  363 DDAFSDWNLRKCSAAALDVLANVFG---DELLP-ILLPLLKEHLSSE-EWKVREAGVLALGAIAEGCMQGFVPHLP-ELI  436 (885)
T ss_pred             ccccccccHhhccHHHHHHHHHhhH---HHHHH-HHHHHHHHHcCcc-hhhhhhhhHHHHHHHHHHHhhhcccchH-HHH
Confidence                 03344444444444442111   12222 3456666666776 8899999999999999875443322221 378


Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHHhhcCCCHH-HHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 009568          374 GPLVNLLQNAEFDIKKEAAWAISNATSGGTHE-QIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG  445 (532)
Q Consensus       374 ~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~-~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~  445 (532)
                      |.|+.+|.++.+-||.-.||+|+..+.....+ .-+++.  .++..|...+-+++.+|+++|+.++..+-+.+
T Consensus       437 p~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~--pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A  507 (885)
T KOG2023|consen  437 PFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK--PVLEGLLRRLLDSNKKVQEAACSAFATLEEEA  507 (885)
T ss_pred             HHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH--HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999886533111 112222  24556666666789999999999988876544

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.56  E-value=7.4e-13  Score=120.76  Aligned_cols=238  Identities=19%  Similarity=0.207  Sum_probs=184.4

Q ss_pred             cccchHHHHHHhhcC-CCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcc
Q 009568          241 QVRPALPALAQLVHS-NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDF  319 (532)
Q Consensus       241 ~~~~~l~~L~~lL~~-~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~  319 (532)
                      ...+-++.|+.+|+. .|+.+++.++.++++.+..+ .....+.+.|+++.+..+|.++++.++..|++++.|++...+.
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~-~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en   87 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFP-FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN   87 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh-hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence            345677889999985 58999999999999987654 4457788999999999999999999999999999999986553


Q ss_pred             hhHHHhhcCchHHHHHH-hcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009568          320 QTQCIITYGALPYLLGL-LTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNA  398 (532)
Q Consensus       320 ~~~~~~~~~~l~~L~~l-L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl  398 (532)
                      ..  .++. .++.+... +.++.+..++..+..+|.|++..+..  +.++ .+.++.++.++..++..+|..++++|.|+
T Consensus        88 ~~--~Ik~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l-~~~i~~ll~LL~~G~~~~k~~vLk~L~nL  161 (254)
T PF04826_consen   88 QE--QIKM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHML-ANYIPDLLSLLSSGSEKTKVQVLKVLVNL  161 (254)
T ss_pred             HH--HHHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhH-HhhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence            32  2332 35555554 44433678999999999999875322  2333 23789999999999999999999999999


Q ss_pred             hcCCCHHHHHHHHHcCChHHHHhhcCCC-CHHHHHHHHHHHHHHHHhhhhhh---hccCCCccchHHHHHHHHhc-cHHH
Q 009568          399 TSGGTHEQIKYLVREGCIKPLCDLFVCP-DPRIVTVCLEGLENILKVGEAEK---NMGTATADVNQYAQLVEEAE-GLEK  473 (532)
Q Consensus       399 ~~~~~~~~~~~l~~~~~l~~L~~lL~~~-d~~v~~~al~~L~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~g-~~~~  473 (532)
                      +.  ++.....++..+++..|+.+++.. +.++...++..+.||-..-.+..   ....+  ..+.....+.+.+ .-++
T Consensus       162 S~--np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~--~~~~L~~~~~e~~~~~~~  237 (254)
T PF04826_consen  162 SE--NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDF--SEDSLFSLFGESSQLAKK  237 (254)
T ss_pred             cc--CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccC--CchhHHHHHccHHHHHHH
Confidence            98  678889999999999999999875 67888889999999865443321   10111  2344446677666 7789


Q ss_pred             HHHHhcCCCHHHHHHH
Q 009568          474 IENLQSHDNNEIYEKA  489 (532)
Q Consensus       474 l~~L~~~~~~~v~~~a  489 (532)
                      |..|..|++++|+.+.
T Consensus       238 l~~l~~h~d~ev~~~v  253 (254)
T PF04826_consen  238 LQALANHPDPEVKEQV  253 (254)
T ss_pred             HHHHHcCCCHHHhhhc
Confidence            9999999999999764

>PTZ00429 beta-adaptin; Provisional

Probab=99.54  E-value=4.9e-11  Score=124.70  Aligned_cols=338  Identities=14%  Similarity=0.119  Sum_probs=233.2

Q ss_pred             cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (532)
Q Consensus        75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  154 (532)
                      .++.+++.+.+++..++......+.+++..  .+.. .+.   +++.|.+=+.+++ |.+|..|++.+++|-.  ++...
T Consensus        69 LF~dVvk~~~S~d~elKKLvYLYL~~ya~~--~pel-alL---aINtl~KDl~d~N-p~IRaLALRtLs~Ir~--~~i~e  139 (746)
T PTZ00429         69 LFVDVVKLAPSTDLELKKLVYLYVLSTARL--QPEK-ALL---AVNTFLQDTTNSS-PVVRALAVRTMMCIRV--SSVLE  139 (746)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHccc--ChHH-HHH---HHHHHHHHcCCCC-HHHHHHHHHHHHcCCc--HHHHH
Confidence            678999999999999999998888888753  2222 122   5788888888888 9999999999999876  44444


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC
Q 009568          155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  234 (532)
Q Consensus       155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~  234 (532)
                      .+     ++.+.+.+.+.++-||..|+.++.++....+.   .+...+.++.|..++ .+.++.+..+|+.+|..++...
T Consensus       140 ~l-----~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~~  210 (746)
T PTZ00429        140 YT-----LEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDYG  210 (746)
T ss_pred             HH-----HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHhC
Confidence            33     47788889999999999999999999765553   344567788888888 7889999999999999998765


Q ss_pred             CCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhh
Q 009568          235 PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV  314 (532)
Q Consensus       235 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~  314 (532)
                      +. ........+..++..+..-++..+..++.+|.......+...     ..++..+...|.+.++.|...|++++.++.
T Consensus       211 ~~-~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~  284 (746)
T PTZ00429        211 SE-KIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLA  284 (746)
T ss_pred             ch-hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence            42 233445566667777777788888888888866442222211     257788889999999999999999999988


Q ss_pred             cCCc-chhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH-------------------------H
Q 009568          315 TGDD-FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAV-------------------------I  368 (532)
Q Consensus       315 ~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l-------------------------~  368 (532)
                      ...+ .....+.. .+-+.++.++ ++ +++++.-++..|.-++...+.....-                         .
T Consensus       285 ~~~~~~~~~~~~~-rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~La  361 (746)
T PTZ00429        285 SRCSQELIERCTV-RVNTALLTLS-RR-DAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLV  361 (746)
T ss_pred             CcCCHHHHHHHHH-HHHHHHHHhh-CC-CccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHc
Confidence            6432 21111111 2224455553 34 56677777666655554333322111                         0


Q ss_pred             Hc----CCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 009568          369 DA----GLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV  444 (532)
Q Consensus       369 ~~----~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~  444 (532)
                      +.    .++..|.....+.+.++++.++.+++.++.... ....     .++..|+++++.... ++..++.++.+|++.
T Consensus       362 ne~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~-~~a~-----~cV~~Ll~ll~~~~~-~v~e~i~vik~Ilrk  434 (746)
T PTZ00429        362 TPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVD-SVAP-----DCANLLLQIVDRRPE-LLPQVVTAAKDIVRK  434 (746)
T ss_pred             CcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCh-HHHH-----HHHHHHHHHhcCCch-hHHHHHHHHHHHHHH
Confidence            00    133445555556688899999999999987532 2222     367788888876444 344567778888765


Q ss_pred             hh
Q 009568          445 GE  446 (532)
Q Consensus       445 ~~  446 (532)
                      .+
T Consensus       435 yP  436 (746)
T PTZ00429        435 YP  436 (746)
T ss_pred             Cc
Confidence            43

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.53  E-value=4e-12  Score=138.84  Aligned_cols=278  Identities=17%  Similarity=0.202  Sum_probs=220.1

Q ss_pred             hCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh
Q 009568          115 QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC  194 (532)
Q Consensus       115 ~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~  194 (532)
                      ....++.|+..|.+++ +.+|..|+..|+.+..           .++++.|...|.++++.+|..|+.+|..+....+  
T Consensus       619 ~~~~~~~L~~~L~D~d-~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~--  684 (897)
T PRK13800        619 DAPSVAELAPYLADPD-PGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP--  684 (897)
T ss_pred             cchhHHHHHHHhcCCC-HHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC--
Confidence            4457889999999988 9999999999998753           2467899999999999999999999998853222  


Q ss_pred             HHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 009568          195 RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG  274 (532)
Q Consensus       195 ~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~  274 (532)
                              ..+.+...| .+.++.++..++.+|..+....           ...++..|.++|+.++..++.+|..+.. 
T Consensus       685 --------~~~~L~~~L-~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~~-  743 (897)
T PRK13800        685 --------PAPALRDHL-GSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVDD-  743 (897)
T ss_pred             --------chHHHHHHh-cCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhcccC-
Confidence                    134566777 6688999999999998865321           2457788999999999999999987521 


Q ss_pred             ChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHH
Q 009568          275 TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTIS  354 (532)
Q Consensus       275 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~  354 (532)
                                   .+.|..++.++++.++..++.+|+.+.....         ..++.|..++.++ ++.||..|+.+|+
T Consensus       744 -------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~-d~~VR~aA~~aLg  800 (897)
T PRK13800        744 -------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDP-DPLVRAAALAALA  800 (897)
T ss_pred             -------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence                         2346678999999999999999998865322         2367888999998 9999999999999


Q ss_pred             HHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHH
Q 009568          355 NITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVC  434 (532)
Q Consensus       355 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~a  434 (532)
                      .+... +.         +++.+...+.++++.||..|+++|..+-..            ..++.|..+|+++++.|+..+
T Consensus       801 ~~g~~-~~---------~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~------------~a~~~L~~~L~D~~~~VR~~A  858 (897)
T PRK13800        801 ELGCP-PD---------DVAAATAALRASAWQVRQGAARALAGAAAD------------VAVPALVEALTDPHLDVRKAA  858 (897)
T ss_pred             hcCCc-ch---------hHHHHHHHhcCCChHHHHHHHHHHHhcccc------------chHHHHHHHhcCCCHHHHHHH
Confidence            99542 11         235677889989999999999999877431            256899999999999999999


Q ss_pred             HHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHH
Q 009568          435 LEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILET  495 (532)
Q Consensus       435 l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~  495 (532)
                      +.+|..+  .+.                     ....+.|.....+++++|+..|...|+.
T Consensus       859 ~~aL~~~--~~~---------------------~~a~~~L~~al~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        859 VLALTRW--PGD---------------------PAARDALTTALTDSDADVRAYARRALAH  896 (897)
T ss_pred             HHHHhcc--CCC---------------------HHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            9999886  111                     0114567788889999999999988763

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.51  E-value=1.3e-11  Score=128.90  Aligned_cols=257  Identities=21%  Similarity=0.227  Sum_probs=164.6

Q ss_pred             ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (532)
Q Consensus        74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  153 (532)
                      ..++.+++.+.+.+...+..+.-.+..+...  ++..- +.   +++.+.+-|.+++ +.++..|++++++++.  ++..
T Consensus        42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--~~~~~-~l---~~n~l~kdl~~~n-~~~~~lAL~~l~~i~~--~~~~  112 (526)
T PF01602_consen   42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHE--DPELL-IL---IINSLQKDLNSPN-PYIRGLALRTLSNIRT--PEMA  112 (526)
T ss_dssp             STHHHHHCTCSSSSHHHHHHHHHHHHHHTTT--SHHHH-HH---HHHHHHHHHCSSS-HHHHHHHHHHHHHH-S--HHHH
T ss_pred             hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhc--chhHH-HH---HHHHHHHhhcCCC-HHHHHHHHhhhhhhcc--cchh
Confidence            3678888888888888888888888777654  22211 11   5677777788877 8999999999999884  5555


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCC
Q 009568          154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG  233 (532)
Q Consensus       154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~  233 (532)
                      ..+     ++.+.+++.++++.+|..|+.++..+....|..   +... .++.+..++ .+.++.++..|+.++..+ +.
T Consensus       113 ~~l-----~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL-~d~~~~V~~~a~~~l~~i-~~  181 (526)
T PF01602_consen  113 EPL-----IPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLL-SDKDPSVVSAALSLLSEI-KC  181 (526)
T ss_dssp             HHH-----HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHT-THSSHHHHHHHHHHHHHH-HC
T ss_pred             hHH-----HHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhc-cCCcchhHHHHHHHHHHH-cc
Confidence            444     488888888889999999999999987655542   2222 477777888 777888898898888888 22


Q ss_pred             CCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHh
Q 009568          234 KPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI  313 (532)
Q Consensus       234 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl  313 (532)
                      .+..........++.|.+++...++..+..++..+..++...+.....   ..+++.+..++.+.++.+...++.++..+
T Consensus       182 ~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l  258 (526)
T PF01602_consen  182 NDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKL  258 (526)
T ss_dssp             THHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence            111111334455556666667778888888888888777655443311   23445555555555555555555555544


Q ss_pred             hcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCC
Q 009568          314 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN  360 (532)
Q Consensus       314 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~  360 (532)
                      ....+      .-..+++.+..++.++ ++.++..++.+|..++...
T Consensus       259 ~~~~~------~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~~  298 (526)
T PF01602_consen  259 SPSPE------LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQSN  298 (526)
T ss_dssp             SSSHH------HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCHC
T ss_pred             hcchH------HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhccc
Confidence            43221      1123445555555544 5555555555555555433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.50  E-value=1.6e-12  Score=118.53  Aligned_cols=197  Identities=20%  Similarity=0.251  Sum_probs=163.3

Q ss_pred             hhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc
Q 009568          113 VIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP  192 (532)
Q Consensus       113 ~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~  192 (532)
                      ..+.+-++.|+.+|+...+|.++..|+.++++.+. .+..++.+.+.|+++.+..+|.++++.+++.|+++|.|++...+
T Consensus         8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e   86 (254)
T PF04826_consen    8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE   86 (254)
T ss_pred             CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh
Confidence            35667789999999976559999999999999887 78899999999999999999999999999999999999987654


Q ss_pred             hhHHHHHhcCChHHHHHHhhh-hhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 009568          193 RCRDLVLSQGALIPLLAQLNE-RAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYL  271 (532)
Q Consensus       193 ~~~~~~~~~~~l~~L~~ll~~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l  271 (532)
                       .+..+-.  .++.+++.+.. .-+..++..++.+|.+|+.....  .......+|.++++|.+++..++..++++|.+|
T Consensus        87 -n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nL  161 (254)
T PF04826_consen   87 -NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNL  161 (254)
T ss_pred             -hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence             3444322  46666665533 34778999999999999876432  223466899999999999999999999999999


Q ss_pred             ccCChhHHHHHHHhCchHHHHHhhCCC-CccchhhHHHHHHHhhcC
Q 009568          272 SDGTNDKIQAVIEAGVCPRLVELLGHP-SPSVLIPALRTVGNIVTG  316 (532)
Q Consensus       272 ~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~al~~L~nl~~~  316 (532)
                      +.++. ....++.++++..++.++... +.++...++..+.||..+
T Consensus       162 S~np~-~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~  206 (254)
T PF04826_consen  162 SENPD-MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN  206 (254)
T ss_pred             ccCHH-HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence            97754 557788889999999999875 677899999999999654

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.49  E-value=6.9e-12  Score=123.06  Aligned_cols=372  Identities=14%  Similarity=0.097  Sum_probs=245.0

Q ss_pred             hhccHHHHHhhhcCCC--hHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC
Q 009568           72 KLESLPAMVAGVWSDD--SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGT  149 (532)
Q Consensus        72 ~~~~l~~lv~~L~s~~--~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~  149 (532)
                      +.+.++.+...++..+  ++.+.+.+..+.....++ ......+.+.+.++.|.++|...++..+....+.++.++...+
T Consensus        49 k~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~e-qd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~  127 (678)
T KOG1293|consen   49 KLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGE-QDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETS  127 (678)
T ss_pred             hhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhc-cchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcc
Confidence            4578899999888665  455566777777777765 6778889999999999999998875688999999999998754


Q ss_pred             hhhH--HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHh
Q 009568          150 SENT--KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTL  227 (532)
Q Consensus       150 ~~~~--~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L  227 (532)
                      +..-  .......+++.+..++..+.......-+....++++. +..+......|+.+.+.-++ ...+..++..+..++
T Consensus       128 ~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~-~~hq~Il~Na~i~ekI~~l~-~~~s~~~RlaaL~~~  205 (678)
T KOG1293|consen  128 KYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSST-KDHQLILCNAGILEKINILL-MYLSSKLRLAALLCL  205 (678)
T ss_pred             cccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccccc-chhhheeccccchhhHHHHH-HhhhHHHHHHHHHHh
Confidence            3322  2222334556555555534444444444444555443 34555666777766666555 566778888888888


Q ss_pred             h---hccCCCCCCCccc-----ccchHH--HHHHhhcCCCHHHHHHHHHHHHHhccCChh----------------HH--
Q 009568          228 S---NFCRGKPQPPFDQ-----VRPALP--ALAQLVHSNDEEVLTDACWALSYLSDGTND----------------KI--  279 (532)
Q Consensus       228 ~---~L~~~~~~~~~~~-----~~~~l~--~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~----------------~~--  279 (532)
                      +   ++..+++......     ..++.+  .+.+++++++...+..++.++.++...+.+                .+  
T Consensus       206 sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q  285 (678)
T KOG1293|consen  206 SRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQ  285 (678)
T ss_pred             hccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHH
Confidence            8   6666654332221     234443  344555555555555555555544432200                00  


Q ss_pred             ---------------------------------HHHHHhCchHHHHHhh-------------------------------
Q 009568          280 ---------------------------------QAVIEAGVCPRLVELL-------------------------------  295 (532)
Q Consensus       280 ---------------------------------~~~~~~~~l~~L~~lL-------------------------------  295 (532)
                                                       ....+....+.+..++                               
T Consensus       286 ~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~  365 (678)
T KOG1293|consen  286 YNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGL  365 (678)
T ss_pred             HhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhc
Confidence                                             0000001111111111                               


Q ss_pred             ---------------------CCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHH
Q 009568          296 ---------------------GHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTIS  354 (532)
Q Consensus       296 ---------------------~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~  354 (532)
                                           ...+..++.+||.++-+++..-......+-...+...+++++..+ +..|+..+..+|+
T Consensus       366 ~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp-~~~i~~~~lgai~  444 (678)
T KOG1293|consen  366 EISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDP-EIMIMGITLGAIC  444 (678)
T ss_pred             chhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCc-chhHHHHHHHHHH
Confidence                                 112334556666666666543332222223456788999999888 8899999999999


Q ss_pred             HHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHH
Q 009568          355 NITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVC  434 (532)
Q Consensus       355 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~a  434 (532)
                      |+..........++..|++..+..++.+.++.+|..+.|+|.++..+.+......+...=.-..+..+.+++|+.|++.+
T Consensus       445 NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~  524 (678)
T KOG1293|consen  445 NLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQC  524 (678)
T ss_pred             HHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHH
Confidence            99986566677899999999999999999999999999999999998766555555554445677778889999999999


Q ss_pred             HHHHHHHHHhhhh
Q 009568          435 LEGLENILKVGEA  447 (532)
Q Consensus       435 l~~L~~l~~~~~~  447 (532)
                      +..+.|+.....+
T Consensus       525 fqllRNl~c~~~~  537 (678)
T KOG1293|consen  525 FQLLRNLTCNSRK  537 (678)
T ss_pred             HHHHHHhhcCcHH
Confidence            9999999876443

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.47  E-value=1.1e-12  Score=107.55  Aligned_cols=119  Identities=36%  Similarity=0.614  Sum_probs=110.3

Q ss_pred             HhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 009568          112 EVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS  191 (532)
Q Consensus       112 ~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~  191 (532)
                      .+++.|+++.+++++.+++ +.++..++++|.+++..+++....+++.|+++.++.+|.++++.++..++|+|++++.+.
T Consensus         2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP   80 (120)
T ss_pred             hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence            4668899999999999888 899999999999999988999999999999999999999999999999999999999988


Q ss_pred             chhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccC
Q 009568          192 PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR  232 (532)
Q Consensus       192 ~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~  232 (532)
                      +..+..+...|+++.++.++ .+.+..+++.++|+|.+|+.
T Consensus        81 ~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          81 EDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence            77788888999999999999 66688999999999999873

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.45  E-value=1.5e-12  Score=106.70  Aligned_cols=118  Identities=37%  Similarity=0.535  Sum_probs=109.7

Q ss_pred             HHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCH
Q 009568          282 VIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNR  361 (532)
Q Consensus       282 ~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~  361 (532)
                      +++.|+++.++.+|.++++.++..++++|++++...+.....+++.|+++.+..+|.++ ++.++..++|+|+|++.+.+
T Consensus         3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcH
Confidence            56779999999999999999999999999999998887888888999999999999998 99999999999999999877


Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009568          362 DQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS  400 (532)
Q Consensus       362 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~  400 (532)
                      .....+.+.|+++.|+.++...+.+++..++|+|.+++.
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            777788899999999999999999999999999999863

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PTZ00429 beta-adaptin; Provisional

Probab=99.44  E-value=6.5e-10  Score=116.38  Aligned_cols=294  Identities=15%  Similarity=0.102  Sum_probs=209.1

Q ss_pred             ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (532)
Q Consensus        74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  153 (532)
                      +.+..+.+.|.+.+...+..|++.+....... .+.      ..+.+..++++.+++ .+++....-.+.+++...++..
T Consensus        32 ge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G-~Dv------S~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~~~pela  103 (746)
T PTZ00429         32 GEGAELQNDLNGTDSYRKKAAVKRIIANMTMG-RDV------SYLFVDVVKLAPSTD-LELKKLVYLYVLSTARLQPEKA  103 (746)
T ss_pred             chHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-CCc------hHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccChHHH
Confidence            34567788888888888888888777666543 221      126777888888888 8999999999999988666643


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCC
Q 009568          154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG  233 (532)
Q Consensus       154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~  233 (532)
                      -.     +++.|.+-+.++++.+|..|++++++|-.  +..-+.     .+.++.+.+ .+.++.+++.|+.++..+.+.
T Consensus       104 lL-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~-----l~~~lkk~L-~D~~pYVRKtAalai~Kly~~  170 (746)
T PTZ00429        104 LL-----AVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLEY-----TLEPLRRAV-ADPDPYVRKTAAMGLGKLFHD  170 (746)
T ss_pred             HH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHHH-----HHHHHHHHh-cCCCHHHHHHHHHHHHHHHhh
Confidence            22     36888888999999999999999999843  222122     356667777 778999999999999999876


Q ss_pred             CCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHh
Q 009568          234 KPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI  313 (532)
Q Consensus       234 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl  313 (532)
                      .|  ......+.++.|..+|.+.|+.|..+|+.+|..+....+....  ...+.+..++..+..-++-.+...+.+|...
T Consensus       171 ~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y  246 (746)
T PTZ00429        171 DM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLPECNEWGQLYILELLAAQ  246 (746)
T ss_pred             Cc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhhcCChHHHHHHHHHHHhc
Confidence            44  2333457888999999999999999999999999866544322  3345677788888776666677777777553


Q ss_pred             hcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHH
Q 009568          314 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG-NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAA  392 (532)
Q Consensus       314 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~  392 (532)
                      ...++...     ..++..+...|++. ++.|.-+|+.++.++... +++.+..+... +-+.|+.+ .+++++++--++
T Consensus       247 ~P~~~~e~-----~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~~~~~~~~~~~~r-l~~pLv~L-~ss~~eiqyvaL  318 (746)
T PTZ00429        247 RPSDKESA-----ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASRCSQELIERCTVR-VNTALLTL-SRRDAETQYIVC  318 (746)
T ss_pred             CCCCcHHH-----HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCcCCHHHHHHHHHH-HHHHHHHh-hCCCccHHHHHH
Confidence            32222111     25677888889998 999999999999998753 23433333321 33455555 345677777777


Q ss_pred             HHHHHhhc
Q 009568          393 WAISNATS  400 (532)
Q Consensus       393 ~aL~nl~~  400 (532)
                      ..|.-++.
T Consensus       319 r~I~~i~~  326 (746)
T PTZ00429        319 KNIHALLV  326 (746)
T ss_pred             HHHHHHHH
Confidence            77655554

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.43  E-value=1.4e-10  Score=121.11  Aligned_cols=325  Identities=20%  Similarity=0.215  Sum_probs=235.7

Q ss_pred             HHhhhcCC--ChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 009568           79 MVAGVWSD--DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVV  156 (532)
Q Consensus        79 lv~~L~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i  156 (532)
                      +.+.+.+.  +...+..++..+..+...+ . +..     .+.+.+++++.+.+ ...+.-+.-.+..+...+++.... 
T Consensus         9 l~~~~~~~~~~~~~~~~~l~kli~~~~~G-~-~~~-----~~~~~vi~l~~s~~-~~~Krl~yl~l~~~~~~~~~~~~l-   79 (526)
T PF01602_consen    9 LAKILNSFKIDISKKKEALKKLIYLMMLG-Y-DIS-----FLFMEVIKLISSKD-LELKRLGYLYLSLYLHEDPELLIL-   79 (526)
T ss_dssp             HHHHHHCSSTHHHHHHHHHHHHHHHHHTT-----G-----STHHHHHCTCSSSS-HHHHHHHHHHHHHHTTTSHHHHHH-
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHcC-C-CCc-----hHHHHHHHHhCCCC-HHHHHHHHHHHHHHhhcchhHHHH-
Confidence            34444444  6677777777777665543 1 221     47888999999777 899999999999999877773332 


Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCC
Q 009568          157 IDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ  236 (532)
Q Consensus       157 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~  236 (532)
                          ++..+.+-|.++++.++..|++++++++  .+...+.     .++.+.+++ .++++.+++.|+.++..+.+..|.
T Consensus        80 ----~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll-~~~~~~VRk~A~~~l~~i~~~~p~  147 (526)
T PF01602_consen   80 ----IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLL-SDPSPYVRKKAALALLKIYRKDPD  147 (526)
T ss_dssp             ----HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHH-HSSSHHHHHHHHHHHHHHHHHCHC
T ss_pred             ----HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHh-cCCchHHHHHHHHHHHHHhccCHH
Confidence                3588888899999999999999999996  3333222     467778888 788889999999999999987432


Q ss_pred             CCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcC
Q 009568          237 PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG  316 (532)
Q Consensus       237 ~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~  316 (532)
                        ..... .++.+..++.++|+.++..|+.++..+ ...+.... -+-..++..|..++...++-.+..+++++..++..
T Consensus       148 --~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~  222 (526)
T PF01602_consen  148 --LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPM  222 (526)
T ss_dssp             --CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSS
T ss_pred             --HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccC
Confidence              21112 789999999999999999999999998 33332211 12224566667777888888999999999998876


Q ss_pred             CcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHH
Q 009568          317 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAIS  396 (532)
Q Consensus       317 ~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~  396 (532)
                      .+.....   ..+++.+..++.+. ++.|..+++.++..+.... ...     ..+++.|..++.++++.++..++.+|.
T Consensus       223 ~~~~~~~---~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~~-~~~-----~~~~~~L~~lL~s~~~nvr~~~L~~L~  292 (526)
T PF01602_consen  223 EPEDADK---NRIIEPLLNLLQSS-SPSVVYEAIRLIIKLSPSP-ELL-----QKAINPLIKLLSSSDPNVRYIALDSLS  292 (526)
T ss_dssp             SHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSSH-HHH-----HHHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred             ChhhhhH---HHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcch-HHH-----HhhHHHHHHHhhcccchhehhHHHHHH
Confidence            6544311   45778899999888 8999999999999887642 212     236788999999889999999999999


Q ss_pred             HhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 009568          397 NATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG  445 (532)
Q Consensus       397 nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~  445 (532)
                      .++... +..    +. ..-..+..+..++|..++..+++.|..+....
T Consensus       293 ~l~~~~-~~~----v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~  335 (526)
T PF01602_consen  293 QLAQSN-PPA----VF-NQSLILFFLLYDDDPSIRKKALDLLYKLANES  335 (526)
T ss_dssp             HHCCHC-HHH----HG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--HH
T ss_pred             Hhhccc-chh----hh-hhhhhhheecCCCChhHHHHHHHHHhhccccc
Confidence            998863 121    11 11222333344888999999999999988643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF01749 IBB: Importin beta binding domain; InterPro: IPR002652 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=99.41  E-value=7.8e-14  Score=106.97  Aligned_cols=90  Identities=48%  Similarity=0.622  Sum_probs=60.3

Q ss_pred             cchHHHhhhcCC-CCCchHHhhhhhHHHHHHHHHhhHHHHHhhhhhccCCCCCCCCCCCc--cchhhhhhccHHHHHhhh
Q 009568            7 ARAEVRRNRYKV-AVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPPPAPAS--NLNLQTKLESLPAMVAGV   83 (532)
Q Consensus         7 ~~~~~~~~~~k~-~~~~~~~~~~r~~~~~~~Rk~~r~~~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~lv~~L   83 (532)
                      ...+.|++.||+ |+|++|+|+||++..++|||+||+|.|.|||+.........+.....  ..........++.++..+
T Consensus         4 ~~~~~R~~~yK~~g~d~~e~RrrRee~~veLRK~KReE~l~KRRn~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~v   83 (97)
T PF01749_consen    4 KKPENRRKSYKNKGKDAEEMRRRREEEQVELRKQKREEQLQKRRNINMADEESSSEESESDQNSSAQQLNEELPEMVAGV   83 (97)
T ss_dssp             ---GGGGGGSTTTT-SHHHHHHHCCCCHHHHCHHHHHCCHSCCHT-----------------TCCCCS--HHHHHHHHHH
T ss_pred             cCHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccccccccccccccccccHHHHHhc
Confidence            356789999999 68999999999999999999999999999999865443322111000  000112234678999999


Q ss_pred             cCCChHHHHHHHH
Q 009568           84 WSDDSSLQLEATT   96 (532)
Q Consensus        84 ~s~~~~~~~~a~~   96 (532)
                      .|+|+..++.|+.
T Consensus        84 ~S~d~~~ql~Atq   96 (97)
T PF01749_consen   84 NSDDPEVQLEATQ   96 (97)
T ss_dssp             TSSCHHHHHHHHH
T ss_pred             CCCCHHHHHHhhC
Confidence            9999999999875

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. Members of the importin-alpha (karyopherin-alpha) family can form heterodimers with importin-beta. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Proteins can contain one (monopartite) or two (bipartite) NLS motifs. Importin-alpha contains several armadillo (ARM) repeats, which produce a curving structure with two NLS-binding sites, a major one close to the N terminus and a minor one close to the C terminus. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. The N-terminal importin-beta-binding (IBB) domain of importin-alpha contains an auto-regulatory region that mimics the NLS motif []. The release of importin-beta frees the auto-regulatory region on importin-alpha to loop back and bind to the major NLS-binding site, causing the cargo to be released []. This entry represents the N-terminal IBB domain of importin-alpha that contains the auto-regulatory region. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006606 protein import into nucleus, 0006886 intracellular protein transport, 0005634 nucleus, 0005737 cytoplasm; PDB: 1BK5_B 1UN0_A 1WA5_B 2C1T_A 1EE4_A 1BK6_A 1EE5_A 3TJ3_A 2JDQ_A 3FEY_C ....

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.37  E-value=3.1e-10  Score=110.39  Aligned_cols=322  Identities=13%  Similarity=0.080  Sum_probs=223.1

Q ss_pred             cHHHHHhhhc-CCChHHHHHHHHHHHHHhcCCCCCchhHhhh-----CCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC
Q 009568           75 SLPAMVAGVW-SDDSSLQLEATTQFRKLLSIERSPPIEEVIQ-----SGVVPRFVEFLMREDYPQLQFEAAWALTNIASG  148 (532)
Q Consensus        75 ~l~~lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~-----~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~  148 (532)
                      ....+++.++ ....++....+..+..++... +.....+.+     ......++.+|..++ .-++..|+.+|+.+.+.
T Consensus        54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~-~~~~~~f~~~~~~~~~~~~~fl~lL~~~d-~~i~~~a~~iLt~l~~~  131 (429)
T cd00256          54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQED-DTRVKLFHDDALLKKKTWEPFFNLLNRQD-QFIVHMSFSILAKLACF  131 (429)
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-hHHHHHHHHHhhccccchHHHHHHHcCCc-hhHHHHHHHHHHHHHhc
Confidence            3456666666 345677777888888888752 223344443     356778888998877 78999999999999874


Q ss_pred             ChhhHHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhh-hhHHHHHHHHH
Q 009568          149 TSENTKVVIDHGAVPIFVKLLASP-SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA-KLSMLRNATWT  226 (532)
Q Consensus       149 ~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~~~~~a~~~  226 (532)
                      ++.........-.++.|...+.++ +...+..|+.+|..+.... .+|..+.+.+++++|+.+|.... +..++..++.+
T Consensus       132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~-~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~  210 (429)
T cd00256         132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVD-EYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFC  210 (429)
T ss_pred             CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCc-hHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence            433211111111334555666553 4777888899999987654 47888888889999999996544 67899999999


Q ss_pred             hhhccCCCCCCCcccccchHHHHHHhhcCC-CHHHHHHHHHHHHHhccCC------hhHHHHHHHhCchHHHHHhhCC--
Q 009568          227 LSNFCRGKPQPPFDQVRPALPALAQLVHSN-DEEVLTDACWALSYLSDGT------NDKIQAVIEAGVCPRLVELLGH--  297 (532)
Q Consensus       227 L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~~------~~~~~~~~~~~~l~~L~~lL~~--  297 (532)
                      ++-|+...+........++++.++.+++.. .+.+..-++.++.|+....      ......+++.|+.+.+-.+...  
T Consensus       211 lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~  290 (429)
T cd00256         211 IWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKY  290 (429)
T ss_pred             HHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCC
Confidence            999998865444444578999999999855 6778899999999998643      2233456676766655444433  


Q ss_pred             CCccchhhHHHHHHH--------hhc--------------CCcch---------hHHHhhc--CchHHHHHHhcCCCchh
Q 009568          298 PSPSVLIPALRTVGN--------IVT--------------GDDFQ---------TQCIITY--GALPYLLGLLTHSHKKS  344 (532)
Q Consensus       298 ~~~~v~~~al~~L~n--------l~~--------------~~~~~---------~~~~~~~--~~l~~L~~lL~~~~~~~  344 (532)
                      .|+++... +..|..        +++              -++.+         ...+-+.  .++..|+.+|..+.++.
T Consensus       291 ~DedL~ed-l~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~  369 (429)
T cd00256         291 DDEDLTDD-LKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPI  369 (429)
T ss_pred             CcHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcc
Confidence            34433221 111111        111              01111         1112222  35788999996554888


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009568          345 IKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS  400 (532)
Q Consensus       345 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~  400 (532)
                      +..-||.=|+.++...|.....+-+.|+=..++.+|.+++++||.+|+.|+..+..
T Consensus       370 ~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  425 (429)
T cd00256         370 ILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV  425 (429)
T ss_pred             eeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999878777777788999999999999999999999999987754

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.35  E-value=4.7e-10  Score=109.10  Aligned_cols=348  Identities=14%  Similarity=0.138  Sum_probs=230.4

Q ss_pred             CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhC-----CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 009568          117 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH-----GAVPIFVKLLASPSDDVREQAVWALGNVAGDS  191 (532)
Q Consensus       117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-----g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~  191 (532)
                      ..+..++.++.....+++....+..+..+...++.....+.+.     ....+++.+|..++.-+...++.+|+.+...+
T Consensus        53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~  132 (429)
T cd00256          53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG  132 (429)
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence            4677788888876667888888888888888777777777764     46678888998889999999999999998654


Q ss_pred             chhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCC--CHHHHHHHHHHHH
Q 009568          192 PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN--DEEVLTDACWALS  269 (532)
Q Consensus       192 ~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~  269 (532)
                      +.........-.+.-+...+....+...+..++.+|..|.+.++........++++.|+++|...  +.+++..++.+++
T Consensus       133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lW  212 (429)
T cd00256         133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIW  212 (429)
T ss_pred             ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            43211111001223344444333356777888899999998876555444566899999999753  5689999999999


Q ss_pred             HhccCChhHHHHHHHhCchHHHHHhhCC-CCccchhhHHHHHHHhhcCCc------chhHHHhhcCchHHHHHHhcCCC-
Q 009568          270 YLSDGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLIPALRTVGNIVTGDD------FQTQCIITYGALPYLLGLLTHSH-  341 (532)
Q Consensus       270 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~------~~~~~~~~~~~l~~L~~lL~~~~-  341 (532)
                      -++...+ ........++++.++.++.. ....+..-++.++.|+...+.      .....++++|+++.+-.+..... 
T Consensus       213 lLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~  291 (429)
T cd00256         213 LLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYD  291 (429)
T ss_pred             HHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCC
Confidence            9987655 34556667999999999976 567788899999999997532      23345667777665555543321 


Q ss_pred             chhHHHHHHHHHHHHhc------CCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc--
Q 009568          342 KKSIKKEACWTISNITA------GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVRE--  413 (532)
Q Consensus       342 ~~~v~~~a~~~L~nl~~------~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~--  413 (532)
                      |+++....- .|.....      .+-+....-+..|-+..  .-.+. ++.     -|          .+....+.+.  
T Consensus       292 DedL~edl~-~L~e~L~~~~k~ltsfD~Y~~El~sg~L~W--Sp~H~-se~-----FW----------~EN~~kf~~~~~  352 (429)
T cd00256         292 DEDLTDDLK-FLTEELKNSVQDLSSFDEYKSELRSGRLHW--SPVHK-SEK-----FW----------RENADRLNEKNY  352 (429)
T ss_pred             cHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHhcCCccC--CCCCC-Cch-----HH----------HHHHHHHHhcch
Confidence            444433222 2222111      01111111111222110  00000 001     01          1223333332  


Q ss_pred             CChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHH
Q 009568          414 GCIKPLCDLFV-CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKI  492 (532)
Q Consensus       414 ~~l~~L~~lL~-~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~i  492 (532)
                      .++..|+++|+ +.|+.+..+|+.=+..+++..+..             ...+++.|+-+.+..|++|+|++|+..|...
T Consensus       353 ~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~g-------------r~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~a  419 (429)
T cd00256         353 ELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRG-------------KDVVEQLGGKQRVMRLLNHEDPNVRYEALLA  419 (429)
T ss_pred             HHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccH-------------HHHHHHcCcHHHHHHHhcCCCHHHHHHHHHH
Confidence            34788999995 678888888998899888875442             5678899999999999999999999999999


Q ss_pred             HHHhC
Q 009568          493 LETYW  497 (532)
Q Consensus       493 l~~~~  497 (532)
                      +.++.
T Consensus       420 vQklm  424 (429)
T cd00256         420 VQKLM  424 (429)
T ss_pred             HHHHH
Confidence            88764

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.34  E-value=4.6e-10  Score=113.01  Aligned_cols=343  Identities=17%  Similarity=0.177  Sum_probs=244.5

Q ss_pred             cHHHHHhhhcC-CChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568           75 SLPAMVAGVWS-DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (532)
Q Consensus        75 ~l~~lv~~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  153 (532)
                      .+|.|+.+|+. .+.++...|+++|..++..- ++....+++.++||.|+.-|..-.+-++.++++.+|-.|+..   +-
T Consensus       212 lvp~Lv~LL~~E~n~DIMl~AcRaltyl~evl-P~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~---H~  287 (1051)
T KOG0168|consen  212 LVPVLVALLSHEHNFDIMLLACRALTYLCEVL-PRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR---HP  287 (1051)
T ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHHhhc-cchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh---cc
Confidence            56888888885 45889999999999998753 344667789999999998887666689999999999999983   44


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccC
Q 009568          154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR  232 (532)
Q Consensus       154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~  232 (532)
                      ..++++|++...+.+|.--+..+++.|+.+..|+|..- ++--..+++  .+|.|..+| +..+....+.++-++..++.
T Consensus       288 ~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lL-s~~D~k~ies~~ic~~ri~d  364 (1051)
T KOG0168|consen  288 KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLL-SYQDKKPIESVCICLTRIAD  364 (1051)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHH-hhccchhHHHHHHHHHHHHH
Confidence            57899999999999998878899999999999999532 222234444  688899999 77888889999999998887


Q ss_pred             CC-CCCCc---ccccchHHHHHHhhcCCC----HHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCc----
Q 009568          233 GK-PQPPF---DQVRPALPALAQLVHSND----EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP----  300 (532)
Q Consensus       233 ~~-~~~~~---~~~~~~l~~L~~lL~~~d----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~----  300 (532)
                      .. +.+..   ....+++.-..+++...+    ..+..-.+..+.-++.+++.....+...++...|..+|.....    
T Consensus       365 ~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~na  444 (1051)
T KOG0168|consen  365 GFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANA  444 (1051)
T ss_pred             hcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCccc
Confidence            75 22222   223567777777776442    3345566777778887777776777777777777777643110    


Q ss_pred             c-----ch-----hhH----------------------------------------------------HHHHHHh-----
Q 009568          301 S-----VL-----IPA----------------------------------------------------LRTVGNI-----  313 (532)
Q Consensus       301 ~-----v~-----~~a----------------------------------------------------l~~L~nl-----  313 (532)
                      .     .+     ...                                                    .+++..+     
T Consensus       445 s~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~  524 (1051)
T KOG0168|consen  445 SLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTG  524 (1051)
T ss_pred             ccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCcc
Confidence            0     00     000                                                    0111100     


Q ss_pred             --------hcCC---------cchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHH-cCCHH
Q 009568          314 --------VTGD---------DFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQAVID-AGLVG  374 (532)
Q Consensus       314 --------~~~~---------~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~-~~~i~  374 (532)
                              ..++         ++..+.++ ..++|.|+.+..++-++.||..++.+|..+.. .+.+.+..++. .++-.
T Consensus       525 t~~~~~dkl~~~~r~~~l~nqpel~q~F~-~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS  603 (1051)
T KOG0168|consen  525 TSRKQQDKLNGSAREGLLKNQPELLQSFG-KDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSS  603 (1051)
T ss_pred             cchhhhhhcCCchhhhhhhcCHHHHHHHH-HHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHH
Confidence                    0000         01111111 14688899999887799999999999999886 67888888885 45556


Q ss_pred             HHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCC
Q 009568          375 PLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC  425 (532)
Q Consensus       375 ~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~  425 (532)
                      .+-.+|.+++..+..-|+...--+...-..-+...+..+|++..+-++...
T Consensus       604 ~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~~~  654 (1051)
T KOG0168|consen  604 HLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAVKQLSVD  654 (1051)
T ss_pred             HHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHhcc
Confidence            677788888888887777776666665455567778888998888887763

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.34  E-value=2e-10  Score=114.43  Aligned_cols=364  Identities=17%  Similarity=0.207  Sum_probs=233.8

Q ss_pred             cHHHHHhhhcCCChH-HHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcC-CCCHHHHHHHHHHHHHHhcCChhh
Q 009568           75 SLPAMVAGVWSDDSS-LQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR-EDYPQLQFEAAWALTNIASGTSEN  152 (532)
Q Consensus        75 ~l~~lv~~L~s~~~~-~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~-~~~~~~~~~a~~~L~~l~~~~~~~  152 (532)
                      .++.++.....+.+. ++..++.++.-++..- .|..-.--...++..++.-... +.+..+|..|+.+|.|-..-...+
T Consensus       130 li~~lv~nv~~~~~~~~k~~slealGyice~i-~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~n  208 (859)
T KOG1241|consen  130 LIVTLVSNVGEEQASMVKESSLEALGYICEDI-DPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKAN  208 (859)
T ss_pred             HHHHHHHhcccccchHHHHHHHHHHHHHHccC-CHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHh
Confidence            445555555555555 6777888888887642 2321111134466666665553 334789999999999865422211


Q ss_pred             H-HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhcc
Q 009568          153 T-KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFC  231 (532)
Q Consensus       153 ~-~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~  231 (532)
                      . ...-.+-++...+..-++++.+++..|+.+|..|..-...+-..-+....+..-+.-+ ++.++++.-.++..++++|
T Consensus       209 F~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~am-ks~~deValQaiEFWstic  287 (859)
T KOG1241|consen  209 FNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAM-KSDNDEVALQAIEFWSTIC  287 (859)
T ss_pred             hccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHH
Confidence            1 1111223456667777789999999999999999764433333333333344444455 5788999999999999888


Q ss_pred             CCCC-------------CCC--cc----cccchHHHHHHhhcCC-------CHHHHHHHHHHHHHhccCChhHHHHHHHh
Q 009568          232 RGKP-------------QPP--FD----QVRPALPALAQLVHSN-------DEEVLTDACWALSYLSDGTNDKIQAVIEA  285 (532)
Q Consensus       232 ~~~~-------------~~~--~~----~~~~~l~~L~~lL~~~-------d~~v~~~a~~~L~~l~~~~~~~~~~~~~~  285 (532)
                      ....             .++  ..    ....++|.|+.+|...       ++..-..|-.||.-++....+.   ++. 
T Consensus       288 eEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~---Iv~-  363 (859)
T KOG1241|consen  288 EEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD---IVP-  363 (859)
T ss_pred             HHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc---chh-
Confidence            5431             111  11    1247788888888542       2345555556665554332221   222 


Q ss_pred             CchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHH
Q 009568          286 GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQ  365 (532)
Q Consensus       286 ~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~  365 (532)
                      .++|.+-..++++++.-+..|..++|.+..+.+.....-+-.+++|.++.++.++ .-.++..+.|+++.++.+.++.+-
T Consensus       364 ~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~l~e~~~  442 (859)
T KOG1241|consen  364 HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDP-SLWVKDTAAWTLGRIADFLPEAII  442 (859)
T ss_pred             hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhhchhhcc
Confidence            4566666677889999999999999999999987766667779999999999987 888999999999999987665432


Q ss_pred             HHH-HcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCC-----H----HHHHHHHHcCChHHHHhhcCC---CCHHHHH
Q 009568          366 AVI-DAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGT-----H----EQIKYLVREGCIKPLCDLFVC---PDPRIVT  432 (532)
Q Consensus       366 ~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~-----~----~~~~~l~~~~~l~~L~~lL~~---~d~~v~~  432 (532)
                      .-. -...++.++.-|. +.|.+..++||++.+++....     .    ...++ . ..++..|+..-+.   .+..++.
T Consensus       443 n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~-y-~~ii~~Ll~~tdr~dgnqsNLR~  519 (859)
T KOG1241|consen  443 NQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPF-Y-EAIIGSLLKVTDRADGNQSNLRS  519 (859)
T ss_pred             cHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchh-H-HHHHHHHHhhccccccchhhHHH
Confidence            222 2334555555554 368999999999999984220     0    00011 0 0134444444443   3467888


Q ss_pred             HHHHHHHHHHHhhhhh
Q 009568          433 VCLEGLENILKVGEAE  448 (532)
Q Consensus       433 ~al~~L~~l~~~~~~~  448 (532)
                      .+-++|..+++...+.
T Consensus       520 AAYeALmElIk~st~~  535 (859)
T KOG1241|consen  520 AAYEALMELIKNSTDD  535 (859)
T ss_pred             HHHHHHHHHHHcCcHH
Confidence            8888888888776654

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.27  E-value=1.4e-09  Score=108.60  Aligned_cols=370  Identities=17%  Similarity=0.225  Sum_probs=242.7

Q ss_pred             HHHHhhhcCCChHHHHHHHHHHHHHhcCCC-------------CCc-hhHhh---hCCcHHHHHHhhcCCC------CHH
Q 009568           77 PAMVAGVWSDDSSLQLEATTQFRKLLSIER-------------SPP-IEEVI---QSGVVPRFVEFLMRED------YPQ  133 (532)
Q Consensus        77 ~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~-------------~~~-~~~~i---~~g~i~~Lv~lL~~~~------~~~  133 (532)
                      ..-+..++|+++++..+|+.....++..+.             .+| ...+.   -.+++|.|+++|...+      +-.
T Consensus       262 aitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWn  341 (859)
T KOG1241|consen  262 AITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWN  341 (859)
T ss_pred             HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCc
Confidence            344556779999999999999887765321             111 11111   1368899999987522      124


Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhh
Q 009568          134 LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE  213 (532)
Q Consensus       134 ~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~  213 (532)
                      ....|..||.-++.-   ..+.++. .++|.+-+-+++++..-++.++.+++.+-......+..-+..++++.++.++ .
T Consensus       342 p~kAAg~CL~l~A~~---~~D~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm-~  416 (859)
T KOG1241|consen  342 PAKAAGVCLMLFAQC---VGDDIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLM-S  416 (859)
T ss_pred             HHHHHHHHHHHHHHH---hcccchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHh-c
Confidence            556666666666541   1122332 3455555577789999999999999999776666666667778899999999 5


Q ss_pred             hhhhHHHHHHHHHhhhccCCCC--CCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHH-----HHHhC
Q 009568          214 RAKLSMLRNATWTLSNFCRGKP--QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQA-----VIEAG  286 (532)
Q Consensus       214 ~~~~~~~~~a~~~L~~L~~~~~--~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~-----~~~~~  286 (532)
                      ++..-++..+.|++..++...+  ..........++.++.-|. +.|.+..++||++.+|++...+....     ... .
T Consensus       417 D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~  494 (859)
T KOG1241|consen  417 DPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-P  494 (859)
T ss_pred             CchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-h
Confidence            7788889999999999998864  2233344556666666654 57889999999999998542211100     001 2


Q ss_pred             chHHHHHhh----CC---CCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHH---------HhcCCC---chhHHH
Q 009568          287 VCPRLVELL----GH---PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLG---------LLTHSH---KKSIKK  347 (532)
Q Consensus       287 ~l~~L~~lL----~~---~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~---------lL~~~~---~~~v~~  347 (532)
                      ..+.++.-|    ..   .+...|..|..+|+.+....+...-.++. ++...++.         .+....   -.+++.
T Consensus       495 ~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~-~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs  573 (859)
T KOG1241|consen  495 FYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQ-KLTLVILEKLDQTISSQILSLADRAQLNELQS  573 (859)
T ss_pred             hHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHH-HHHHHHHHHHHHHHHHHhccHhhHHHHHHHHH
Confidence            233333322    22   34678999999999999877754433322 33333332         232220   135677


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC-chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhc-CC
Q 009568          348 EACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA-EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLF-VC  425 (532)
Q Consensus       348 ~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL-~~  425 (532)
                      ..|.+|..+.+.....+....+. ++..+++++.++ +.-+...|..+++.++..-.+.+.+|+-.  ..+.|..-| +.
T Consensus       574 ~Lc~~Lq~i~rk~~~~~~~~~d~-iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~--f~pyL~~gL~n~  650 (859)
T KOG1241|consen  574 LLCNTLQSIIRKVGSDIREVSDQ-IMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPA--FKPYLLMGLSNF  650 (859)
T ss_pred             HHHHHHHHHHHHccccchhHHHH-HHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHH--HHHHHHHHhhcc
Confidence            78888888876333334344433 678889999884 55688889999998888666677777543  677777777 45


Q ss_pred             CCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHH
Q 009568          426 PDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVE  466 (532)
Q Consensus       426 ~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~  466 (532)
                      .+..|...++..+..+.+.-+.         ...+|+..+.
T Consensus       651 ~e~qVc~~aVglVgdl~raL~~---------~i~py~d~~m  682 (859)
T KOG1241|consen  651 QEYQVCAAAVGLVGDLARALED---------DILPYCDELM  682 (859)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHh---------hhhhHHHHHH
Confidence            6778888888888888876554         4667787665

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.19  E-value=1e-08  Score=103.30  Aligned_cols=342  Identities=17%  Similarity=0.190  Sum_probs=239.4

Q ss_pred             ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (532)
Q Consensus        74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  153 (532)
                      ..++.++++....|.+.....-..+.+.+...  |...    .++++.++.=..+++ +.+|..|++.++.+-.  +...
T Consensus        49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~--P~~a----~~avnt~~kD~~d~n-p~iR~lAlrtm~~l~v--~~i~  119 (734)
T KOG1061|consen   49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGK--PDLA----ILAVNTFLKDCEDPN-PLIRALALRTMGCLRV--DKIT  119 (734)
T ss_pred             hhhHHHHhhcccCCchHHHHHHHHHHHhhccC--chHH----HhhhhhhhccCCCCC-HHHHHHHhhceeeEee--hHHH
Confidence            35799999999999888888888888888753  3221    246788888778888 9999999888877765  2333


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCC
Q 009568          154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG  233 (532)
Q Consensus       154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~  233 (532)
                      ..     +..+|...+++.++.+|..++.+..++-..++   +.+...|.+..|-.++ .+.++.+..+|+.+|..+...
T Consensus       120 ey-----~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll-~D~~p~VVAnAlaaL~eI~e~  190 (734)
T KOG1061|consen  120 EY-----LCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLL-SDSNPMVVANALAALSEIHES  190 (734)
T ss_pred             HH-----HHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHh-cCCCchHHHHHHHHHHHHHHh
Confidence            33     35888999999999999999999999865543   4677889999999999 688999999999999999988


Q ss_pred             CCC-CCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHH
Q 009568          234 KPQ-PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN  312 (532)
Q Consensus       234 ~~~-~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~n  312 (532)
                      .+. .........+..++..+..-++.-+...+.++.+-...++.-..     .++..+...|.+.+..+...+...+.+
T Consensus       191 ~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~  265 (734)
T KOG1061|consen  191 HPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAE-----DICERLTPRLQHANSAVVLSAVKVILQ  265 (734)
T ss_pred             CCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHH-----HHHHHhhhhhccCCcceEeehHHHHHH
Confidence            753 44444556666677777666677777777777665544332222     467788888999999999889888888


Q ss_pred             hhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHH-------------------------HH
Q 009568          313 IVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQ-------------------------AV  367 (532)
Q Consensus       313 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~-------------------------~l  367 (532)
                      +......... .+-..+-+.++.++.+. . .++.-|..-+.-+....++...                         .+
T Consensus       266 ~~~~~~~~~~-~~~~K~~~pl~tlls~~-~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~l  342 (734)
T KOG1061|consen  266 LVKYLKQVNE-LLFKKVAPPLVTLLSSE-S-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIEL  342 (734)
T ss_pred             HHHHHHHHHH-HHHHHhcccceeeeccc-c-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHH
Confidence            8765543222 22224556666666654 3 5554444444333333332111                         01


Q ss_pred             HH-cC---CHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 009568          368 ID-AG---LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILK  443 (532)
Q Consensus       368 ~~-~~---~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~  443 (532)
                      .. .+   ++..+...-..-|.+..+++.+|+++++.....       .+++++.|+++++.....++..+...+..+++
T Consensus       343 a~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~-------~~~cv~~lLell~~~~~yvvqE~~vvi~dilR  415 (734)
T KOG1061|consen  343 ANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQ-------SNDCVSILLELLETKVDYVVQEAIVVIRDILR  415 (734)
T ss_pred             hhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhh-------hhhhHHHHHHHHhhcccceeeehhHHHHhhhh
Confidence            11 11   233333333445788899999999999885332       15789999999998888888888889999998


Q ss_pred             hhhhh
Q 009568          444 VGEAE  448 (532)
Q Consensus       444 ~~~~~  448 (532)
                      +.++.
T Consensus       416 kyP~~  420 (734)
T KOG1061|consen  416 KYPNK  420 (734)
T ss_pred             cCCCc
Confidence            76554

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=99.13  E-value=1.1e-09  Score=108.81  Aligned_cols=343  Identities=14%  Similarity=0.128  Sum_probs=221.7

Q ss_pred             cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCC-HHHHHHHHHHHHHHhcCC-hhh
Q 009568           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDY-PQLQFEAAWALTNIASGT-SEN  152 (532)
Q Consensus        75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~-~~~~~~a~~~L~~l~~~~-~~~  152 (532)
                      .+..++..++++.+..+...+....++...-....++.-.+...+..++..++.++. ..+......++.+-..+. ..+
T Consensus       717 ~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpy  796 (1172)
T KOG0213|consen  717 IVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPY  796 (1172)
T ss_pred             HHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccc
Confidence            466777888888888888888888888765333334444444556666666655442 223333333333322210 111


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH--HHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhc
Q 009568          153 TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR--DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF  230 (532)
Q Consensus       153 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~--~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L  230 (532)
                      ..     .++..++..|+++++.+|.+|+..++.++.--..+.  ..+...|.  .|...| ....++++-.++.++..+
T Consensus       797 lp-----qi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEyl-geeypEvLgsILgAikaI  868 (1172)
T KOG0213|consen  797 LP-----QICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYL-GEEYPEVLGSILGAIKAI  868 (1172)
T ss_pred             hH-----HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhc-CcccHHHHHHHHHHHHHH
Confidence            11     234667778899999999999999999874222221  12222222  244555 566888888888888777


Q ss_pred             cCCC-CCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHH
Q 009568          231 CRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT  309 (532)
Q Consensus       231 ~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~  309 (532)
                      +... -.....-..+++|.|..+|++....|+++++..++.++...++.+..---..+.--|+.+|...+..++..|..+
T Consensus       869 ~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nT  948 (1172)
T KOG0213|consen  869 VNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNT  948 (1172)
T ss_pred             HHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            6554 223334457899999999999999999999999999998877665443334566668888888889999999999


Q ss_pred             HHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHH
Q 009568          310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKK  389 (532)
Q Consensus       310 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~  389 (532)
                      +|.|+..       +-...++..|++-|+.. +...|.-..-+++-++..+..       -.++|.|+.-...++..|+.
T Consensus       949 fG~Iaka-------IGPqdVLatLlnnLkvq-eRq~RvcTtvaIaIVaE~c~p-------FtVLPalmneYrtPe~nVQn 1013 (1172)
T KOG0213|consen  949 FGYIAKA-------IGPQDVLATLLNNLKVQ-ERQNRVCTTVAIAIVAETCGP-------FTVLPALMNEYRTPEANVQN 1013 (1172)
T ss_pred             hhHHHHh-------cCHHHHHHHHHhcchHH-HHHhchhhhhhhhhhhhhcCc-------hhhhHHHHhhccCchhHHHH
Confidence            9999853       22234455666666544 333333222333333322111       12678887777777889999


Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 009568          390 EAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENIL  442 (532)
Q Consensus       390 ~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~  442 (532)
                      -.+.+++.+..........|+..  +.+.|-+.|.+.|..-+..+..++..+.
T Consensus      1014 GVLkalsf~FeyigemskdYiya--v~PlleDAlmDrD~vhRqta~~~I~Hl~ 1064 (1172)
T KOG0213|consen 1014 GVLKALSFMFEYIGEMSKDYIYA--VTPLLEDALMDRDLVHRQTAMNVIKHLA 1064 (1172)
T ss_pred             hHHHHHHHHHHHHHHHhhhHHHH--hhHHHHHhhccccHHHHHHHHHHHHHHh
Confidence            99999999887544444455443  6777778888888877777777776664

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.11  E-value=1.2e-07  Score=94.42  Aligned_cols=218  Identities=17%  Similarity=0.201  Sum_probs=160.4

Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 009568           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV  155 (532)
Q Consensus        76 l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  155 (532)
                      -+.++.+|++.-+-++..|+..+.++...  .|..  +  ...+|.|++-|.+++ |.++..|+.+++.+|..+|.+.-.
T Consensus       146 a~Dv~tLL~sskpYvRKkAIl~lykvFLk--YPeA--l--r~~FprL~EkLeDpD-p~V~SAAV~VICELArKnPknyL~  218 (877)
T KOG1059|consen  146 ADDVFTLLNSSKPYVRKKAILLLYKVFLK--YPEA--L--RPCFPRLVEKLEDPD-PSVVSAAVSVICELARKNPQNYLQ  218 (877)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHHHh--hhHh--H--hhhHHHHHHhccCCC-chHHHHHHHHHHHHHhhCCccccc
Confidence            46778888888888999998888887653  2321  1  126899999999998 999999999999999988776433


Q ss_pred             HHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhc--cC
Q 009568          156 VIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF--CR  232 (532)
Q Consensus       156 i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L--~~  232 (532)
                           .-|.+.++|.. .+.=+.-..+..+++++--.|.....     .+++|..++....-.++...|+.++..-  +.
T Consensus       219 -----LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~s~  288 (877)
T KOG1059|consen  219 -----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSMSS  288 (877)
T ss_pred             -----ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence                 34888888765 33334455777888887766665444     5889999995555566666666655433  32


Q ss_pred             CCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHH
Q 009568          233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN  312 (532)
Q Consensus       233 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~n  312 (532)
                      +. ........-++..|-.++.++|+.++.-++.+++.+...++..++.     .-..++.+|.+.++.++..|+..+.-
T Consensus       289 g~-~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~DkD~SIRlrALdLl~g  362 (877)
T KOG1059|consen  289 GM-SDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDKDESIRLRALDLLYG  362 (877)
T ss_pred             CC-CCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccCCchhHHHHHHHHHH
Confidence            21 2333444567777888889999999999999999999887765542     34578899999999999999999988


Q ss_pred             hhcC
Q 009568          313 IVTG  316 (532)
Q Consensus       313 l~~~  316 (532)
                      ++..
T Consensus       363 mVsk  366 (877)
T KOG1059|consen  363 MVSK  366 (877)
T ss_pred             Hhhh
Confidence            8853

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.10  E-value=2.2e-07  Score=93.58  Aligned_cols=324  Identities=17%  Similarity=0.210  Sum_probs=238.6

Q ss_pred             ccHHHHHhhhcCCC-hHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCC-CCHHHHHHHHHHHHHHhcCCh-
Q 009568           74 ESLPAMVAGVWSDD-SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE-DYPQLQFEAAWALTNIASGTS-  150 (532)
Q Consensus        74 ~~l~~lv~~L~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~-~~~~~~~~a~~~L~~l~~~~~-  150 (532)
                      +.++.|+..+.+.. .+-|..|++.|..+...     -+.-+...+++.|++.|+.+ .++++...++..+.++..... 
T Consensus        22 ETI~kLcDRvessTL~eDRR~A~rgLKa~srk-----YR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~   96 (970)
T KOG0946|consen   22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSRK-----YREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS   96 (970)
T ss_pred             hHHHHHHHHHhhccchhhHHHHHHHHHHHHHH-----HHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence            57889998887654 67788999999888642     23334445788899988753 348999999999999877431 


Q ss_pred             -----h----------hHHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC-CCchhHHHHHhc-CChHHHHHHhh
Q 009568          151 -----E----------NTKVVI-DHGAVPIFVKLLASPSDDVREQAVWALGNVAG-DSPRCRDLVLSQ-GALIPLLAQLN  212 (532)
Q Consensus       151 -----~----------~~~~i~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~-~~~~~~~~~~~~-~~l~~L~~ll~  212 (532)
                           +          ..+.++ ..+.|..|+..+...+-.||..++..|.++.. .++..++.++.. .++..++.+| 
T Consensus        97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL-  175 (970)
T KOG0946|consen   97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL-  175 (970)
T ss_pred             hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH-
Confidence                 1          122233 35789999999999999999999999999875 445677776654 4688999999 


Q ss_pred             hhhhhHHHHHHHHHhhhccCCCCCCCc-ccccchHHHHHHhhcCC---CH-HHHHHHHHHHHHhccCChhHHHHHHHhCc
Q 009568          213 ERAKLSMLRNATWTLSNFCRGKPQPPF-DQVRPALPALAQLVHSN---DE-EVLTDACWALSYLSDGTNDKIQAVIEAGV  287 (532)
Q Consensus       213 ~~~~~~~~~~a~~~L~~L~~~~~~~~~-~~~~~~l~~L~~lL~~~---d~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~  287 (532)
                      .+..+.++..++..|..|.++.+..+. ....+++..|..++...   |. -|..+++..+.|+..++..+...+.+.+.
T Consensus       176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~  255 (970)
T KOG0946|consen  176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY  255 (970)
T ss_pred             hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence            777788999999999999999855544 34578888899998753   33 58889999999999888888788899999


Q ss_pred             hHHHHHhhCC---CC-----cc-----chhhHHHHHHHhhcCCc-----c-hhHHHhhcCchHHHHHHhcCC-CchhHHH
Q 009568          288 CPRLVELLGH---PS-----PS-----VLIPALRTVGNIVTGDD-----F-QTQCIITYGALPYLLGLLTHS-HKKSIKK  347 (532)
Q Consensus       288 l~~L~~lL~~---~~-----~~-----v~~~al~~L~nl~~~~~-----~-~~~~~~~~~~l~~L~~lL~~~-~~~~v~~  347 (532)
                      +|.|.++|..   .+     |.     -...++.++..++....     . ..+.+..++++..|..++.++ -..+|+.
T Consensus       256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlt  335 (970)
T KOG0946|consen  256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILT  335 (970)
T ss_pred             HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHH
Confidence            9999988854   22     21     13446677777665322     1 224566789999999999876 3458999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHcCC----------HHHHHHHHhcC-chhHHHHHHHHHHHhhcCCC
Q 009568          348 EACWTISNITAGNRDQIQAVIDAGL----------VGPLVNLLQNA-EFDIKKEAAWAISNATSGGT  403 (532)
Q Consensus       348 ~a~~~L~nl~~~~~~~~~~l~~~~~----------i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~~  403 (532)
                      ++..+++++..++......+.+..+          +-.++.+..+. .+..|..+.+++..+.....
T Consensus       336 esiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~  402 (970)
T KOG0946|consen  336 ESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDND  402 (970)
T ss_pred             HHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcch
Confidence            9999999999988776666654211          11223333333 67899999999998887643

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.08  E-value=9.7e-08  Score=89.81  Aligned_cols=321  Identities=13%  Similarity=0.111  Sum_probs=221.5

Q ss_pred             cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh------CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 009568          118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID------HGAVPIFVKLLASPSDDVREQAVWALGNVAGDS  191 (532)
Q Consensus       118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~------~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~  191 (532)
                      .+.+++.+++..+.++....++..+..+...+......+..      .-.-+..+.+|...+.-+.+...++++.++..+
T Consensus        66 ~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g  145 (442)
T KOG2759|consen   66 YVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACFG  145 (442)
T ss_pred             HHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHhc
Confidence            56667777776554566666666666665544333322221      233677888998899999998999999988554


Q ss_pred             chhH---HHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhc--CCCHHHHHHHHH
Q 009568          192 PRCR---DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH--SNDEEVLTDACW  266 (532)
Q Consensus       192 ~~~~---~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~--~~d~~v~~~a~~  266 (532)
                      +..-   +.-.   ....|-..+.++.+......++.||..+.+.++.........++..++..+.  ..+-.++...+.
T Consensus       146 ~~~~~~~e~~~---~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsif  222 (442)
T KOG2759|consen  146 NCKMELSELDV---YKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIF  222 (442)
T ss_pred             cccccchHHHH---HHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHH
Confidence            3211   1111   1233344444456778888899999999998866666666777777777773  337789999999


Q ss_pred             HHHHhccCChhHHHHHHHhCchHHHHHhhCC-CCccchhhHHHHHHHhhcCCc------chhHHHhhcCchHHHHHHhcC
Q 009568          267 ALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLIPALRTVGNIVTGDD------FQTQCIITYGALPYLLGLLTH  339 (532)
Q Consensus       267 ~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~------~~~~~~~~~~~l~~L~~lL~~  339 (532)
                      |++-|+.++.-. +.+...+.++.|..++++ ....|..-++.++.|++...+      .....++.+++++.+-.+...
T Consensus       223 ciWlLtFn~~~a-e~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~r  301 (442)
T KOG2759|consen  223 CIWLLTFNPHAA-EKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEER  301 (442)
T ss_pred             HHHHhhcCHHHH-HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhc
Confidence            999998776543 666777899999999977 467788889999999998774      334456677777766666543


Q ss_pred             CC-chhHHHHHHHHHHHH-------hc----------C----CH---------HHHHHHHHc--CCHHHHHHHHhcC-ch
Q 009568          340 SH-KKSIKKEACWTISNI-------TA----------G----NR---------DQIQAVIDA--GLVGPLVNLLQNA-EF  385 (532)
Q Consensus       340 ~~-~~~v~~~a~~~L~nl-------~~----------~----~~---------~~~~~l~~~--~~i~~L~~ll~~~-~~  385 (532)
                      .. ++++....-..-..+       +.          |    +|         +....+-+.  .++..|+.+|+.. ||
T Consensus       302 kysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp  381 (442)
T KOG2759|consen  302 KYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDP  381 (442)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCC
Confidence            32 333333222221111       11          0    11         223333332  3688899999887 58


Q ss_pred             hHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 009568          386 DIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILK  443 (532)
Q Consensus       386 ~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~  443 (532)
                      .+-.-||.=++..+.. .|+....+.+.|+=+.+++++.++|++|+..|+.++..++-
T Consensus       382 ~iL~VAc~DIge~Vr~-yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~  438 (442)
T KOG2759|consen  382 IILCVACHDIGEYVRH-YPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV  438 (442)
T ss_pred             ceeehhhhhHHHHHHh-CchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence            8888999999999887 56777777788999999999999999999999999998874

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=4.3e-08  Score=91.03  Aligned_cols=189  Identities=20%  Similarity=0.230  Sum_probs=158.7

Q ss_pred             CCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHH
Q 009568          256 NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLG  335 (532)
Q Consensus       256 ~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~  335 (532)
                      .+.+-+..++.-|.+++..-+ +...++..|++..++.++.+.+..+|..|+++||.++..++.....+++.|+++.|+.
T Consensus        95 ~~le~ke~ald~Le~lve~iD-nAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~  173 (342)
T KOG2160|consen   95 VDLEDKEDALDNLEELVEDID-NANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK  173 (342)
T ss_pred             CCHHHHHHHHHHHHHHHHhhh-hHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence            467778888888888886544 4466888899999999999999999999999999999999988889999999999999


Q ss_pred             HhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc--CchhHHHHHHHHHHHhhcCCCHHHHHHHHHc
Q 009568          336 LLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN--AEFDIKKEAAWAISNATSGGTHEQIKYLVRE  413 (532)
Q Consensus       336 lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~  413 (532)
                      +|.++.+..+|..|.++++.+...++.....+...+....|...+++  .+..++..|+..+..++.... .....+...
T Consensus       174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~-s~~d~~~~~  252 (342)
T KOG2160|consen  174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK-SDEDIASSL  252 (342)
T ss_pred             HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh-hhhhHHHHh
Confidence            99987566888999999999999888888899988889999999999  577889999999999987633 333344566


Q ss_pred             CChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 009568          414 GCIKPLCDLFVCPDPRIVTVCLEGLENILKVGE  446 (532)
Q Consensus       414 ~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~  446 (532)
                      +....+..+....+.++...++.++..++..-.
T Consensus       253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~  285 (342)
T KOG2160|consen  253 GFQRVLENLISSLDFEVNEAALTALLSLLSELS  285 (342)
T ss_pred             hhhHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence            777777788888888888888887777765443

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.06  E-value=5.9e-07  Score=90.56  Aligned_cols=325  Identities=16%  Similarity=0.159  Sum_probs=237.1

Q ss_pred             cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCc---
Q 009568          118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDSP---  192 (532)
Q Consensus       118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~---  192 (532)
                      -|+.|++-+.+..-.+-|+.|+..|-.++.   .++..+... ++++|++.|..  .++++...++.++.++.....   
T Consensus        23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~-Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~   98 (970)
T KOG0946|consen   23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQ-GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE   98 (970)
T ss_pred             HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHc-ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence            688999888776557889999999999987   566666654 58999999876  679999999999999986442   


Q ss_pred             ---hh----------HH-HHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCc---ccccchHHHHHHhhcC
Q 009568          193 ---RC----------RD-LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF---DQVRPALPALAQLVHS  255 (532)
Q Consensus       193 ---~~----------~~-~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~---~~~~~~l~~L~~lL~~  255 (532)
                         ..          .+ .+...+.+..++..+ ...|-.++..++..++++....|....   .....++..++.+|.+
T Consensus        99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~-e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D  177 (970)
T KOG0946|consen   99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSL-EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD  177 (970)
T ss_pred             hcccchhhhHHHHHHHHHHHcCchhHHHHHHHH-HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence               11          11 233466788888888 777899999999999999887643322   2235688899999999


Q ss_pred             CCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCC----CccchhhHHHHHHHhhcCCcchhHHHhhcCchH
Q 009568          256 NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP----SPSVLIPALRTVGNIVTGDDFQTQCIITYGALP  331 (532)
Q Consensus       256 ~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~----~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~  331 (532)
                      ..+.++..++..|+.++..++...+.+.=.+++..|+.++...    ..-|...|+..|.||...+......+.+.+.+|
T Consensus       178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~  257 (970)
T KOG0946|consen  178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIP  257 (970)
T ss_pred             hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHH
Confidence            9999999999999999988776656565568999999999652    235788899999999998888888889999999


Q ss_pred             HHHHHhcCCC--c-----hhH-----HHHHHHHHHHHhc-CCH----HHH-HHHHHcCCHHHHHHHHhcC--chhHHHHH
Q 009568          332 YLLGLLTHSH--K-----KSI-----KKEACWTISNITA-GNR----DQI-QAVIDAGLVGPLVNLLQNA--EFDIKKEA  391 (532)
Q Consensus       332 ~L~~lL~~~~--~-----~~v-----~~~a~~~L~nl~~-~~~----~~~-~~l~~~~~i~~L~~ll~~~--~~~v~~~a  391 (532)
                      .|.++|....  +     +.-     ...+..++..+.. +++    .+. ..+...+++..|+.++.++  ..+|+..+
T Consensus       258 rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltes  337 (970)
T KOG0946|consen  258 RLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTES  337 (970)
T ss_pred             HHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHH
Confidence            9998885321  2     111     1244555666554 332    223 3455788999999988776  56899999


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHcC----------ChHHHHhhcCCC-CHHHHHHHHHHHHHHHHhhhhh
Q 009568          392 AWAISNATSGGTHEQIKYLVREG----------CIKPLCDLFVCP-DPRIVTVCLEGLENILKVGEAE  448 (532)
Q Consensus       392 ~~aL~nl~~~~~~~~~~~l~~~~----------~l~~L~~lL~~~-d~~v~~~al~~L~~l~~~~~~~  448 (532)
                      ..++++.+.+.. ..-..+..-.          ++-.++.+..+. ....+..++.++..++-.....
T Consensus       338 iitvAevVRgn~-~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~g  404 (970)
T KOG0946|consen  338 IITVAEVVRGNA-RNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDG  404 (970)
T ss_pred             HHHHHHHHHhch-HHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhh
Confidence            999999998753 3333334321          112233333443 4567888888888888766554

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.06  E-value=3.4e-08  Score=92.83  Aligned_cols=278  Identities=15%  Similarity=0.145  Sum_probs=199.6

Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCc-h-hHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPP-I-EEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (532)
Q Consensus        76 l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~-~-~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  153 (532)
                      -+.++..|..++.-+...+.+.+.++++..+... . ..-+   ....|...+++..+++....|++||..+.. -++.+
T Consensus       116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~---~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR  191 (442)
T KOG2759|consen  116 WLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDV---YKGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYR  191 (442)
T ss_pred             hHHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHH---HHHHHHHHHhccCCCchHHHHHHHHHHHhc-Ccchh
Confidence            4677888888888888889999998887542111 1 1111   123344555553446788889999999998 78899


Q ss_pred             HHHHhCCChHHHHHhhC-C-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhcc
Q 009568          154 KVVIDHGAVPIFVKLLA-S-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFC  231 (532)
Q Consensus       154 ~~i~~~g~i~~L~~lL~-~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~  231 (532)
                      ..++...++..++..+. + .+..++-+.+.+++-++...+ ..+.+...+.++.|..++..+..+.+.+.++.++.|++
T Consensus       192 ~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~-~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll  270 (442)
T KOG2759|consen  192 YAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPH-AAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLL  270 (442)
T ss_pred             heeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999883 3 568899999999999966554 44666788899999999988889999999999999999


Q ss_pred             CCCCCCCc------ccccchHHHHHHhhc---CCCHHHHHHHHHHHHHhccC------ChhH------------------
Q 009568          232 RGKPQPPF------DQVRPALPALAQLVH---SNDEEVLTDACWALSYLSDG------TNDK------------------  278 (532)
Q Consensus       232 ~~~~~~~~------~~~~~~l~~L~~lL~---~~d~~v~~~a~~~L~~l~~~------~~~~------------------  278 (532)
                      ...+....      .....-++..++.|.   -+|+++..+.-..-..|-..      .+++                  
T Consensus       271 ~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e  350 (442)
T KOG2759|consen  271 DKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSE  350 (442)
T ss_pred             ccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCcccccc
Confidence            87642221      112233334444443   23666554433332222110      0111                  


Q ss_pred             ------HHHHHHh--CchHHHHHhhCCC-CccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHH
Q 009568          279 ------IQAVIEA--GVCPRLVELLGHP-SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA  349 (532)
Q Consensus       279 ------~~~~~~~--~~l~~L~~lL~~~-~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a  349 (532)
                            ...+-+.  .++..|+.+|... ++.+...||.=||..+...|.....+.+.|+=+.++++|+++ +++||.+|
T Consensus       351 ~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~-d~~Vry~A  429 (442)
T KOG2759|consen  351 KFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHE-DPEVRYHA  429 (442)
T ss_pred             chHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCC-CchHHHHH
Confidence                  1112211  4788899999765 588899999999999999998888888899999999999999 99999999


Q ss_pred             HHHHHHHhcC
Q 009568          350 CWTISNITAG  359 (532)
Q Consensus       350 ~~~L~nl~~~  359 (532)
                      ..++-.+..+
T Consensus       430 LlavQ~lm~~  439 (442)
T KOG2759|consen  430 LLAVQKLMVH  439 (442)
T ss_pred             HHHHHHHHhh
Confidence            9998777643

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=1e-08  Score=95.12  Aligned_cols=184  Identities=18%  Similarity=0.222  Sum_probs=153.6

Q ss_pred             CHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHH
Q 009568          131 YPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQ  210 (532)
Q Consensus       131 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~l  210 (532)
                      +++-+..|+.-|..++. +-++...++..|++..++.++.+.+..+|+.|+|+|+.++..+|..+..+++.|++..|+..
T Consensus        96 ~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~  174 (342)
T KOG2160|consen   96 DLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI  174 (342)
T ss_pred             CHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence            37888888888888888 77888889999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhHHHHHHHHHhhhccCCC-CCCCcccccchHHHHHHhhcC--CCHHHHHHHHHHHHHhccCChhHHHHHHHhCc
Q 009568          211 LNERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHS--NDEEVLTDACWALSYLSDGTNDKIQAVIEAGV  287 (532)
Q Consensus       211 l~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~lL~~--~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~  287 (532)
                      +..+.+..++..++.+++.+.++. +........+++..|...+++  .+...+..++..+.++..........+...++
T Consensus       175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f  254 (342)
T KOG2160|consen  175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF  254 (342)
T ss_pred             HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence            987778889999999999999998 444444445668999999998  56778899999999998766555454555566


Q ss_pred             hHHHHHhhCCCCccchhhHHHHHHHhhc
Q 009568          288 CPRLVELLGHPSPSVLIPALRTVGNIVT  315 (532)
Q Consensus       288 l~~L~~lL~~~~~~v~~~al~~L~nl~~  315 (532)
                      ...+..+....+..+...++.++..+..
T Consensus       255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  255 QRVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             hHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence            6666677777778888888777766554

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=8.5e-07  Score=91.78  Aligned_cols=328  Identities=16%  Similarity=0.195  Sum_probs=225.4

Q ss_pred             HHHHHHHHHHHHhcCCCCCchhHh-----hhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHH
Q 009568           90 LQLEATTQFRKLLSIERSPPIEEV-----IQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPI  164 (532)
Q Consensus        90 ~~~~a~~~l~~l~~~~~~~~~~~~-----i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~  164 (532)
                      -...++.+|+++++.  +|....+     .--|..+.+..+|.....+.++.-|+.++.-+.. +.++...+++.|.+..
T Consensus      1741 ~v~m~LtAL~Nli~~--nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~ 1817 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSA--NPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTT 1817 (2235)
T ss_pred             HHHHHHHHHHHHHhh--CcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHH
Confidence            456799999999987  4543333     2347788888888765558999999999887777 8899999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC---CCCCccc
Q 009568          165 FVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK---PQPPFDQ  241 (532)
Q Consensus       165 L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~---~~~~~~~  241 (532)
                      |+.+|.+ -+..|+.++.+|..+++... .....++.|++..++.++..+..+..+..++..+..|..++   |......
T Consensus      1818 LL~lLHS-~PS~R~~vL~vLYAL~S~~~-i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL 1895 (2235)
T KOG1789|consen 1818 LLTLLHS-QPSMRARVLDVLYALSSNGQ-IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITL 1895 (2235)
T ss_pred             HHHHHhc-ChHHHHHHHHHHHHHhcCcH-HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeeh
Confidence            9999976 47789999999999976554 55667789999999999888888999999999999999887   2222222


Q ss_pred             ccchHHHHHHhhcC-------------CCHHH------HHHHHHHHHHhccC--------------ChhHH---------
Q 009568          242 VRPALPALAQLVHS-------------NDEEV------LTDACWALSYLSDG--------------TNDKI---------  279 (532)
Q Consensus       242 ~~~~l~~L~~lL~~-------------~d~~v------~~~a~~~L~~l~~~--------------~~~~~---------  279 (532)
                      ++.+-..++..+++             .+|++      +...-..+..+...              -+++.         
T Consensus      1896 ~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E 1975 (2235)
T KOG1789|consen 1896 IKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKE 1975 (2235)
T ss_pred             HHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccC
Confidence            22222233333332             12221      22222222222210              00000         


Q ss_pred             --------H-HHH------------HhCchHHHHHhhCCCCcc--chhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHH
Q 009568          280 --------Q-AVI------------EAGVCPRLVELLGHPSPS--VLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGL  336 (532)
Q Consensus       280 --------~-~~~------------~~~~l~~L~~lL~~~~~~--v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~l  336 (532)
                              . .+.            -.+++..+..++..+++.  ....-..++..+....+...+.+-..|.+|.++..
T Consensus      1976 ~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~A 2055 (2235)
T KOG1789|consen 1976 CAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTA 2055 (2235)
T ss_pred             cccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHH
Confidence                    0 000            114556666666554432  22333344555666666666777778999999999


Q ss_pred             hcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCCh
Q 009568          337 LTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCI  416 (532)
Q Consensus       337 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l  416 (532)
                      +... +..+-+.|..+|..++.. .-+.+.+.....+..++..|... +....-|+.+|..+......+.....+..|++
T Consensus      2056 m~~~-n~s~P~SaiRVlH~Lsen-~~C~~AMA~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLv 2132 (2235)
T KOG1789|consen 2056 MCLQ-NTSAPRSAIRVLHELSEN-QFCCDAMAQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELVAQMLKCGLV 2132 (2235)
T ss_pred             HHhc-CCcCcHHHHHHHHHHhhc-cHHHHHHhccccchhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHHHHHhccCcH
Confidence            9877 667778999999999864 55666666666666777777643 45556889999999887677777778889999


Q ss_pred             HHHHhhcCC
Q 009568          417 KPLCDLFVC  425 (532)
Q Consensus       417 ~~L~~lL~~  425 (532)
                      +.|+.+|+.
T Consensus      2133 pyLL~LLd~ 2141 (2235)
T KOG1789|consen 2133 PYLLQLLDS 2141 (2235)
T ss_pred             HHHHHHhcc
Confidence            999999985

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.01  E-value=9.6e-09  Score=98.76  Aligned_cols=230  Identities=17%  Similarity=0.240  Sum_probs=166.9

Q ss_pred             HHHHhhc--CCCHHHHHHHHHHHHHhccCChhHHHHHHH------hCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcc
Q 009568          248 ALAQLVH--SNDEEVLTDACWALSYLSDGTNDKIQAVIE------AGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDF  319 (532)
Q Consensus       248 ~L~~lL~--~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~------~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~  319 (532)
                      .++.+|+  +.+++++.+++..+..+....+...+.+..      ...+..++.++.+++..+...|+++++.++...+.
T Consensus        59 ~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~  138 (312)
T PF03224_consen   59 LFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPK  138 (312)
T ss_dssp             ---HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT
T ss_pred             HHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCc
Confidence            3334443  468899999999999999877766666654      23678888899999999999999999999987765


Q ss_pred             hhHHHhhcCchHHHHHHhcC----CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH------hc-CchhHH
Q 009568          320 QTQCIITYGALPYLLGLLTH----SHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLL------QN-AEFDIK  388 (532)
Q Consensus       320 ~~~~~~~~~~l~~L~~lL~~----~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll------~~-~~~~v~  388 (532)
                      ...... .+.++.++..+.+    + +..++..|+.+|.++.. .+.....+++.++++.+..++      .+ ....++
T Consensus       139 ~~~~~~-~~~l~~ll~~L~~~l~~~-~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~  215 (312)
T PF03224_consen  139 RSEKLV-KEALPKLLQWLSSQLSSS-DSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQ  215 (312)
T ss_dssp             --HHHH-HHHHHHHHHHHH-TT-HH-HH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHHH
T ss_pred             cccchH-HHHHHHHHHHHHHhhcCC-CcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHH
Confidence            443322 3556677776654    3 55677899999999985 477788888899999999999      22 267888


Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHH
Q 009568          389 KEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV-CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEE  467 (532)
Q Consensus       389 ~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (532)
                      -+++.++.-++.  +++....+...++++.|.++++ ...++|++.++.++.|++....+.            +...+..
T Consensus       216 Y~~ll~lWlLSF--~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~------------~~~~mv~  281 (312)
T PF03224_consen  216 YQALLCLWLLSF--EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKS------------NIELMVL  281 (312)
T ss_dssp             HHHHHHHHHHTT--SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTT------------HHHHHHH
T ss_pred             HHHHHHHHHHhc--CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHH------------HHHHHHH
Confidence            999999999988  6788888888899999999997 467899999999999999765432            5677778


Q ss_pred             hccHHHHHHHhc--CCCHHHHHHHHHHHH
Q 009568          468 AEGLEKIENLQS--HDNNEIYEKAVKILE  494 (532)
Q Consensus       468 ~g~~~~l~~L~~--~~~~~v~~~a~~il~  494 (532)
                      +|++..++.|+.  -.|+|+.+--..+-+
T Consensus       282 ~~~l~~l~~L~~rk~~Dedl~edl~~L~e  310 (312)
T PF03224_consen  282 CGLLKTLQNLSERKWSDEDLTEDLEFLKE  310 (312)
T ss_dssp             H-HHHHHHHHHSS--SSHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence            999999999964  588888876655544

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.98  E-value=2.7e-07  Score=89.64  Aligned_cols=355  Identities=12%  Similarity=0.120  Sum_probs=224.1

Q ss_pred             ccHHHHHhhhcC-------CChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHh
Q 009568           74 ESLPAMVAGVWS-------DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIA  146 (532)
Q Consensus        74 ~~l~~lv~~L~s-------~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~  146 (532)
                      +.+|.++++|..       +|+..-..|..+|.-.+...    .+.+.+. ++..+-+-+.+++ -.-+..|+.+++.+.
T Consensus       321 dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~----gd~i~~p-Vl~FvEqni~~~~-w~nreaavmAfGSvm  394 (858)
T COG5215         321 DVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLK----GDKIMRP-VLGFVEQNIRSES-WANREAAVMAFGSVM  394 (858)
T ss_pred             HHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHh----hhHhHHH-HHHHHHHhccCch-hhhHHHHHHHhhhhh
Confidence            357888888875       34566666777776655421    1222222 3333444566777 577888999999998


Q ss_pred             cCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhh--hhhhHHHHHHH
Q 009568          147 SGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE--RAKLSMLRNAT  224 (532)
Q Consensus       147 ~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~~~~~~a~  224 (532)
                      .+..+....-+-..++|.+...+.++..-+++.++|+++.|+.+-+   ..+-..+-++..+..+..  ...+.+..+++
T Consensus       395 ~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va---~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncs  471 (858)
T COG5215         395 HGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVA---MIISPCGHLVLEVSASLIGLMDCPFRSINCS  471 (858)
T ss_pred             cCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHH---HhcCccccccHHHHHHHhhhhccchHHhhhH
Confidence            8655444443445788999998888888899999999999986533   333344555555443322  23567888999


Q ss_pred             HHhhhccCCCCCCC---cccccchHHHHHHhh-c-----CCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhh
Q 009568          225 WTLSNFCRGKPQPP---FDQVRPALPALAQLV-H-----SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL  295 (532)
Q Consensus       225 ~~L~~L~~~~~~~~---~~~~~~~l~~L~~lL-~-----~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL  295 (532)
                      |..-||..+-+...   ........+.++.-| +     .++...+..+..+|+.+...+++....++. |+......-|
T Consensus       472 w~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a-~~~~~~~~kl  550 (858)
T COG5215         472 WRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILA-GFYDYTSKKL  550 (858)
T ss_pred             HHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHH-HHHHHHHHHH
Confidence            99999998763322   222333334333322 1     345667888888888887665554443332 3333332222


Q ss_pred             C-----------CC----CccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCC
Q 009568          296 G-----------HP----SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN  360 (532)
Q Consensus       296 ~-----------~~----~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~  360 (532)
                      .           ..    -.+++..-+..|..+........+. ....++..++++|.+.....+-.....++++++..-
T Consensus       551 ~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~-v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl  629 (858)
T COG5215         551 DECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIED-VEDQLMELFIRILESTKPTTAFGDVYTAISALSTSL  629 (858)
T ss_pred             HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-HHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHH
Confidence            1           11    1345566666676666544433322 223567888999988733455667788899998754


Q ss_pred             HHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCC--HHHHHHHHHHH
Q 009568          361 RDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPD--PRIVTVCLEGL  438 (532)
Q Consensus       361 ~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d--~~v~~~al~~L  438 (532)
                      .+....... .++|.|.+.|...+..+...|...++.++..-..+...+  .......|+++|+++.  .++.-.+|.++
T Consensus       630 ~e~Fe~y~~-~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y--~d~~ms~LvQ~lss~~~~R~lKPaiLSvF  706 (858)
T COG5215         630 EERFEQYAS-KFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIY--ADVLMSSLVQCLSSEATHRDLKPAILSVF  706 (858)
T ss_pred             HHHHHHHHh-hhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHhcChhhccccchHHHHHH
Confidence            555544443 489999999988899999999999999987544444443  3346788889998754  45666666666


Q ss_pred             HHHH
Q 009568          439 ENIL  442 (532)
Q Consensus       439 ~~l~  442 (532)
                      ..|.
T Consensus       707 gDIA  710 (858)
T COG5215         707 GDIA  710 (858)
T ss_pred             HHHH
Confidence            5554

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.96  E-value=1.9e-08  Score=96.70  Aligned_cols=228  Identities=14%  Similarity=0.171  Sum_probs=161.5

Q ss_pred             ChHHHHHHhhhh-hhhHHHHHHHHHhhhccCCCCCCCcccc-------cchHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 009568          203 ALIPLLAQLNER-AKLSMLRNATWTLSNFCRGKPQPPFDQV-------RPALPALAQLVHSNDEEVLTDACWALSYLSDG  274 (532)
Q Consensus       203 ~l~~L~~ll~~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~-------~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~  274 (532)
                      ....++.+|... .+.++.++++..+..++...+.......       ...+..+++++.++|..+...++..+..+...
T Consensus        56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~  135 (312)
T PF03224_consen   56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ  135 (312)
T ss_dssp             ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence            355666777665 7889999999999999988763332222       12456677788899999999999999999876


Q ss_pred             ChhHHHHHHHhCchHHHHHhhCC----CCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHh------cCCCchh
Q 009568          275 TNDKIQAVIEAGVCPRLVELLGH----PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLL------THSHKKS  344 (532)
Q Consensus       275 ~~~~~~~~~~~~~l~~L~~lL~~----~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL------~~~~~~~  344 (532)
                      .+....... .++++.++.++.+    ++..++..++.+++++.. .+..+..+++.++++.+..++      .+.....
T Consensus       136 ~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Q  213 (312)
T PF03224_consen  136 GPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQ  213 (312)
T ss_dssp             TTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHH
T ss_pred             CCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchh
Confidence            654433322 3566777777654    455677899999999996 455788889999999999999      3443678


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC-chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhc
Q 009568          345 IKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA-EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLF  423 (532)
Q Consensus       345 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL  423 (532)
                      ++.+++.++.-++.. ++.+..+.+.++++.|+++++.. ..+|.+-++.++.|++..........++..|+++.+..+.
T Consensus       214 l~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~  292 (312)
T PF03224_consen  214 LQYQALLCLWLLSFE-PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLS  292 (312)
T ss_dssp             HHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcC-HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHh
Confidence            999999999999764 67778888888999999999876 6789999999999999987656788888888888777766


Q ss_pred             C--CCCHHHHHH
Q 009568          424 V--CPDPRIVTV  433 (532)
Q Consensus       424 ~--~~d~~v~~~  433 (532)
                      .  ..|+++..-
T Consensus       293 ~rk~~Dedl~ed  304 (312)
T PF03224_consen  293 ERKWSDEDLTED  304 (312)
T ss_dssp             SS--SSHHHHHH
T ss_pred             cCCCCCHHHHHH
Confidence            5  478877653

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.96  E-value=9.8e-08  Score=92.65  Aligned_cols=357  Identities=13%  Similarity=0.062  Sum_probs=218.1

Q ss_pred             HHHHhhhcCCCh-HHHHHHHHHHHHHhcCCCCCchhHhhhCC-cHHHHH-HhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568           77 PAMVAGVWSDDS-SLQLEATTQFRKLLSIERSPPIEEVIQSG-VVPRFV-EFLMREDYPQLQFEAAWALTNIASGTSENT  153 (532)
Q Consensus        77 ~~lv~~L~s~~~-~~~~~a~~~l~~l~~~~~~~~~~~~i~~g-~i~~Lv-~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  153 (532)
                      ..++.....+.| .....++..+..++...  .|-..+...+ ++-.++ .-++.+.+..+|..|+.+|.+-+.   ..+
T Consensus       136 ~~mv~nvg~eqp~~~k~~sl~~~gy~ces~--~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~---fv~  210 (858)
T COG5215         136 EEMVRNVGDEQPVSGKCESLGICGYHCESE--APEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLM---FVQ  210 (858)
T ss_pred             HHHHHhccccCchHhHHHHHHHHHHHhhcc--CHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH---HHH
Confidence            334444444444 46777888888888653  3322222222 333333 334444447899999999988332   111


Q ss_pred             HHHHhC----CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhh
Q 009568          154 KVVIDH----GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSN  229 (532)
Q Consensus       154 ~~i~~~----g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~  229 (532)
                      ..+...    -++...+..-+.++.+++..++.||..|..-...+-...++........+.+ ++++.++...++..++.
T Consensus       211 ~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~m-ks~nd~va~qavEfWst  289 (858)
T COG5215         211 GNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFM-KSQNDEVAIQAVEFWST  289 (858)
T ss_pred             HhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchHHHHHHHHHHHH
Confidence            112211    2335555566678999999999999998754433333444433333333334 78889999999999988


Q ss_pred             ccCCCCCCCc-----------------ccccchHHHHHHhhcC-------CCHHHHHHHHHHHHHhccCChhHHHHHHHh
Q 009568          230 FCRGKPQPPF-----------------DQVRPALPALAQLVHS-------NDEEVLTDACWALSYLSDGTNDKIQAVIEA  285 (532)
Q Consensus       230 L~~~~~~~~~-----------------~~~~~~l~~L~~lL~~-------~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~  285 (532)
                      +|........                 .....++|.|+++|..       +|..+-..|..||.-.+....+   .+++ 
T Consensus       290 iceEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd---~i~~-  365 (858)
T COG5215         290 ICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD---KIMR-  365 (858)
T ss_pred             HHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh---HhHH-
Confidence            8876411100                 1135689999999964       2344556666666555433222   2333 


Q ss_pred             CchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHH
Q 009568          286 GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQ  365 (532)
Q Consensus       286 ~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~  365 (532)
                      .++..+-.-++++++.-+..+..++|.+..+........+-...+|.+...+.++ .-.++..++|+++.++.+-+..+.
T Consensus       366 pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~-~l~vk~ttAwc~g~iad~va~~i~  444 (858)
T COG5215         366 PVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDS-CLWVKSTTAWCFGAIADHVAMIIS  444 (858)
T ss_pred             HHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccc-eeehhhHHHHHHHHHHHHHHHhcC
Confidence            2555555667889999999999999999999886655556668999999999987 888999999999999865443332


Q ss_pred             HHHHcCCHHHHHHHHhc---CchhHHHHHHHHHHHhhcCCCHHHH--HHHHH---cCChHHHHhhcC--CCCHHHHHHHH
Q 009568          366 AVIDAGLVGPLVNLLQN---AEFDIKKEAAWAISNATSGGTHEQI--KYLVR---EGCIKPLCDLFV--CPDPRIVTVCL  435 (532)
Q Consensus       366 ~l~~~~~i~~L~~ll~~---~~~~v~~~a~~aL~nl~~~~~~~~~--~~l~~---~~~l~~L~~lL~--~~d~~v~~~al  435 (532)
                      +.   +-++..+....-   +.+.+..+++|...|++.+-.+...  ..++.   ..++..|+..-+  ..+...+....
T Consensus       445 p~---~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~f  521 (858)
T COG5215         445 PC---GHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLF  521 (858)
T ss_pred             cc---ccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            22   222222222211   3678888999999999865322110  11111   012333333222  34556777777


Q ss_pred             HHHHHHHHhhhh
Q 009568          436 EGLENILKVGEA  447 (532)
Q Consensus       436 ~~L~~l~~~~~~  447 (532)
                      .+|..++.++..
T Consensus       522 saLgtli~~~~d  533 (858)
T COG5215         522 SALGTLILICPD  533 (858)
T ss_pred             HHHHHHHhhcch
Confidence            888888776654

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.95  E-value=4.5e-08  Score=101.09  Aligned_cols=271  Identities=18%  Similarity=0.224  Sum_probs=210.8

Q ss_pred             hHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH
Q 009568           88 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK  167 (532)
Q Consensus        88 ~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~  167 (532)
                      ...|+.|....-...+..+.||-+       +|..++.|-+.   --|..|+..|+.+..-.+-.....+.-|+.|..++
T Consensus       450 FteQLTAFevWLd~gse~r~PPeQ-------LPiVLQVLLSQ---vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLK  519 (1387)
T KOG1517|consen  450 FTEQLTAFEVWLDYGSESRTPPEQ-------LPIVLQVLLSQ---VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLK  519 (1387)
T ss_pred             HHHHHHHHHHHHHhccccCCChHh-------cchHHHHHHHH---HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHH
Confidence            456777888888877776667764       56677766653   35778999999999878888888888999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhh--hhHHHHHHHHHhhhccCCCCCCCcc-cccc
Q 009568          168 LLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA--KLSMLRNATWTLSNFCRGKPQPPFD-QVRP  244 (532)
Q Consensus       168 lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~--~~~~~~~a~~~L~~L~~~~~~~~~~-~~~~  244 (532)
                      +|+++-.+++-..+.+.+.|..-++.++..+++.++...+++.|..+.  +++-+..++.+|+.++++.+..+.. ...+
T Consensus       520 LLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~  599 (1387)
T KOG1517|consen  520 LLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGN  599 (1387)
T ss_pred             HhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhcccc
Confidence            999999999999999999988777889888888888888888885422  5577888999999999986444433 3467


Q ss_pred             hHHHHHHhhcCC-CHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcC----Ccc
Q 009568          245 ALPALAQLVHSN-DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG----DDF  319 (532)
Q Consensus       245 ~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~----~~~  319 (532)
                      ++..++..+.++ .+-++..+|-||+.|-.+.+...=.-.+.++...|+.+|.++-++||..|+.+||.+...    .++
T Consensus       600 li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde  679 (1387)
T KOG1517|consen  600 LIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDE  679 (1387)
T ss_pred             HHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccch
Confidence            788888888875 688899999999999877665433445668899999999999999999999999999875    333


Q ss_pred             hhHHH------------hhcCch---HHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009568          320 QTQCI------------ITYGAL---PYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID  369 (532)
Q Consensus       320 ~~~~~------------~~~~~l---~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~  369 (532)
                      .+..+            ++..+.   ..++.+++.. .+-++.+..-+|+.+..+...++..+.-
T Consensus       680 ~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~~~va~  743 (1387)
T KOG1517|consen  680 QTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVSHLKVVAG  743 (1387)
T ss_pred             hhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHhHHHhh
Confidence            33222            222222   3667777888 9999999999999999887766655443

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.93  E-value=9.7e-07  Score=89.40  Aligned_cols=362  Identities=15%  Similarity=0.138  Sum_probs=182.4

Q ss_pred             HHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 009568           79 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID  158 (532)
Q Consensus        79 lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~  158 (532)
                      +.+.|++.+.-++-.|+.++.++.+.+       ++ ..+.|-+.++|++.+ +-++..|+.|...+....|+..+.+  
T Consensus       112 lknDL~s~nq~vVglAL~alg~i~s~E-------ma-rdlapeVe~Ll~~~~-~~irKKA~Lca~r~irK~P~l~e~f--  180 (866)
T KOG1062|consen  112 LKNDLNSSNQYVVGLALCALGNICSPE-------MA-RDLAPEVERLLQHRD-PYIRKKAALCAVRFIRKVPDLVEHF--  180 (866)
T ss_pred             HHhhccCCCeeehHHHHHHhhccCCHH-------Hh-HHhhHHHHHHHhCCC-HHHHHHHHHHHHHHHHcCchHHHHh--
Confidence            334445555555555666666665432       11 124556666666655 6666666666666666555544433  


Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhh--------------hhhhHHHHHHH
Q 009568          159 HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE--------------RAKLSMLRNAT  224 (532)
Q Consensus       159 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~--------------~~~~~~~~~a~  224 (532)
                         ++...++|.+.+.-|.-.++..+..+|..++..-..+-+  .++.++..|++              -.+|=++..++
T Consensus       181 ---~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iL  255 (866)
T KOG1062|consen  181 ---VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRIL  255 (866)
T ss_pred             ---hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHH
Confidence               355555665555555555555555555544332222111  23333333311              01233444444


Q ss_pred             HHhhhccCCCCCCCcccccchHHHHHHhhcCC------CHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCC
Q 009568          225 WTLSNFCRGKPQPPFDQVRPALPALAQLVHSN------DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP  298 (532)
Q Consensus       225 ~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~------d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~  298 (532)
                      ..|.-|..+++... ..+.   ..|.+.....      -..+...+..++..+-.++.-+      .-++..|-.+|.+.
T Consensus       256 rlLriLGq~d~daS-d~M~---DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~Lr------vlainiLgkFL~n~  325 (866)
T KOG1062|consen  256 RLLRILGQNDADAS-DLMN---DILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLR------VLAINILGKFLLNR  325 (866)
T ss_pred             HHHHHhcCCCccHH-HHHH---HHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHH------HHHHHHHHHHhcCC
Confidence            44444444321110 0001   1111111111      1223444444443333222111      01344555556666


Q ss_pred             CccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHH
Q 009568          299 SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVN  378 (532)
Q Consensus       299 ~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~  378 (532)
                      +..++..|+..|...+..++...+.     -=..++.+|+++ +..+|+.|...+-.+...  ..+..     ++..|+.
T Consensus       326 d~NirYvaLn~L~r~V~~d~~avqr-----Hr~tIleCL~Dp-D~SIkrralELs~~lvn~--~Nv~~-----mv~eLl~  392 (866)
T KOG1062|consen  326 DNNIRYVALNMLLRVVQQDPTAVQR-----HRSTILECLKDP-DVSIKRRALELSYALVNE--SNVRV-----MVKELLE  392 (866)
T ss_pred             ccceeeeehhhHHhhhcCCcHHHHH-----HHHHHHHHhcCC-cHHHHHHHHHHHHHHhcc--ccHHH-----HHHHHHH
Confidence            6666666777766666655533221     124678889999 999999999988888753  33433     4567889


Q ss_pred             HHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh-hhhhhccCCCcc
Q 009568          379 LLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG-EAEKNMGTATAD  457 (532)
Q Consensus       379 ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~-~~~~~~~~~~~~  457 (532)
                      +|...+++++...+.-+..++..-.|+..=      .++.+...|...-.-|..-+...+..++..+ ......     .
T Consensus       393 fL~~~d~~~k~~~as~I~~laEkfaP~k~W------~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y-----~  461 (866)
T KOG1062|consen  393 FLESSDEDFKADIASKIAELAEKFAPDKRW------HIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEY-----A  461 (866)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHhcCCcchh------HHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhH-----H
Confidence            999889999999999988888755443222      2555555665433333333333333333332 111100     1


Q ss_pred             chHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009568          458 VNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW  497 (532)
Q Consensus       458 ~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~  497 (532)
                      ...+...+.+.+       ++.-+.+.+..-|.|+|-+|=
T Consensus       462 ~~rLy~a~~~~~-------~~~is~e~l~qVa~W~IGEYG  494 (866)
T KOG1062|consen  462 VLRLYLALSEDT-------LLDISQEPLLQVASWCIGEYG  494 (866)
T ss_pred             HHHHHHHHhhhh-------hhhhhhhhHHHHHHHHhhhhh
Confidence            122222222111       333445566788899998874

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.87  E-value=3.1e-06  Score=83.99  Aligned_cols=314  Identities=18%  Similarity=0.134  Sum_probs=210.3

Q ss_pred             cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q 009568          118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL  197 (532)
Q Consensus       118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~  197 (532)
                      ++..|.+-+..+. +.+|.....||..+.........    ..+.+.+.+++......-+.-+.+.++.+..+...  ..
T Consensus        97 ~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~~~~~~~----~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i--~~  169 (569)
T KOG1242|consen   97 IIEILLEELDTPS-KSVQRAVSTCLPPLVVLSKGLSG----EYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGI--ES  169 (569)
T ss_pred             HHHHHHHhcCCCc-HHHHHHHHHHhhhHHHHhhccCH----HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHH--hh
Confidence            6778888888888 89999999998887652221111    12357777888887788888899999988766543  34


Q ss_pred             HHhcCChHHHHHHhhhhhhhHHHH-HHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh
Q 009568          198 VLSQGALIPLLAQLNERAKLSMLR-NATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN  276 (532)
Q Consensus       198 ~~~~~~l~~L~~ll~~~~~~~~~~-~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~  276 (532)
                      +.+.+++..+...+ .+......+ .+..+.-..+..-..........++|.++..+.+..+.++..+..+..-+...-+
T Consensus       170 ~~~~~~l~~l~~ai-~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~  248 (569)
T KOG1242|consen  170 LKEFGFLDNLSKAI-IDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLS  248 (569)
T ss_pred             hhhhhHHHHHHHHh-cccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcC
Confidence            55667788888877 333333333 2333333333332233333445666777777777788888888777766543322


Q ss_pred             hHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHH
Q 009568          277 DKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNI  356 (532)
Q Consensus       277 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl  356 (532)
                      ...   ++ .+++.++.-+....|.....++..+|.++...+.+.... -..++|.+...|.++ .+++|+.+..++-++
T Consensus       249 ~~a---VK-~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~-lp~iiP~lsevl~DT-~~evr~a~~~~l~~~  322 (569)
T KOG1242|consen  249 AYA---VK-LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLC-LPDLIPVLSEVLWDT-KPEVRKAGIETLLKF  322 (569)
T ss_pred             cch---hh-HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHH-HhHhhHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence            110   11 345555555555588899999999999998877665443 448999999999999 999999999999988


Q ss_pred             hc--CCHHHHHHHHH------------------------------cC----CHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009568          357 TA--GNRDQIQAVID------------------------------AG----LVGPLVNLLQNAEFDIKKEAAWAISNATS  400 (532)
Q Consensus       357 ~~--~~~~~~~~l~~------------------------------~~----~i~~L~~ll~~~~~~v~~~a~~aL~nl~~  400 (532)
                      +.  .+++ ++.++.                              .-    ++|.|.+-+...+..+++.++..+.|++.
T Consensus       323 ~svidN~d-I~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~  401 (569)
T KOG1242|consen  323 GSVIDNPD-IQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCK  401 (569)
T ss_pred             HHhhccHH-HHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHH
Confidence            86  4443 332211                              01    23444444445567888999999999987


Q ss_pred             CC-CHHH-HHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhh
Q 009568          401 GG-THEQ-IKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAE  448 (532)
Q Consensus       401 ~~-~~~~-~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~  448 (532)
                      -- ++.. .+++-+  +++.|-..+.+.+|+++..+..+|..+++.....
T Consensus       402 LveDp~~lapfl~~--Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~  449 (569)
T KOG1242|consen  402 LVEDPKDLAPFLPS--LLPGLKENLDDAVPEVRAVAARALGALLERLGEV  449 (569)
T ss_pred             hhcCHHHHhhhHHH--HhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhh
Confidence            44 3333 333333  6777777788889999999999998888765544

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.87  E-value=1.1e-06  Score=89.14  Aligned_cols=288  Identities=15%  Similarity=0.154  Sum_probs=199.7

Q ss_pred             cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (532)
Q Consensus        75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  154 (532)
                      ..|.+.+.|+..++-++..|+.++.++...  .|....    .+++...++|.+.+ .-+...++..+..++..+++...
T Consensus       143 lapeVe~Ll~~~~~~irKKA~Lca~r~irK--~P~l~e----~f~~~~~~lL~ek~-hGVL~~~l~l~~e~c~~~~~~l~  215 (866)
T KOG1062|consen  143 LAPEVERLLQHRDPYIRKKAALCAVRFIRK--VPDLVE----HFVIAFRKLLCEKH-HGVLIAGLHLITELCKISPDALS  215 (866)
T ss_pred             hhHHHHHHHhCCCHHHHHHHHHHHHHHHHc--CchHHH----HhhHHHHHHHhhcC-CceeeeHHHHHHHHHhcCHHHHH
Confidence            457788889999999999999999999875  344332    26788888998887 78999999999999998887777


Q ss_pred             HHHhCCChHHHHHhhCC---------------CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhh-----
Q 009568          155 VVIDHGAVPIFVKLLAS---------------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNER-----  214 (532)
Q Consensus       155 ~i~~~g~i~~L~~lL~~---------------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~-----  214 (532)
                      .+-+  .++.|+..|+.               ++|-++...++.|.-+-.+.+...+.+-     ..|-+...+.     
T Consensus       216 ~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~-----DiLaqvatntdsskN  288 (866)
T KOG1062|consen  216 YFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMN-----DILAQVATNTDSSKN  288 (866)
T ss_pred             HHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHH-----HHHHHHHhccccccc
Confidence            7765  66777766642               4788999999999988766665444431     2233333211     


Q ss_pred             hhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHh
Q 009568          215 AKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL  294 (532)
Q Consensus       215 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l  294 (532)
                      ....++..++.++..+-...     ....-++.+|-++|.+.|..++.-++.+|......++...+.     -=..++.+
T Consensus       289 ~GnAILYE~V~TI~~I~~~~-----~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqr-----Hr~tIleC  358 (866)
T KOG1062|consen  289 AGNAILYECVRTIMDIRSNS-----GLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQR-----HRSTILEC  358 (866)
T ss_pred             chhHHHHHHHHHHHhccCCc-----hHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHH-----HHHHHHHH
Confidence            12456666666666554332     122345678889999999999999999999998777655442     23568899


Q ss_pred             hCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCH
Q 009568          295 LGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQAVIDAGLV  373 (532)
Q Consensus       295 L~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i  373 (532)
                      |.+++..++..|+..+-.|+..+  ....     ++..|+..|.+. +++++...+.-+..++. ..|+....      +
T Consensus       359 L~DpD~SIkrralELs~~lvn~~--Nv~~-----mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~k~W~------i  424 (866)
T KOG1062|consen  359 LKDPDVSIKRRALELSYALVNES--NVRV-----MVKELLEFLESS-DEDFKADIASKIAELAEKFAPDKRWH------I  424 (866)
T ss_pred             hcCCcHHHHHHHHHHHHHHhccc--cHHH-----HHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCcchhH------H
Confidence            99999999999999998888544  3333     345788888888 89999999888888886 33433322      3


Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009568          374 GPLVNLLQNAEFDIKKEAAWAISNATS  400 (532)
Q Consensus       374 ~~L~~ll~~~~~~v~~~a~~aL~nl~~  400 (532)
                      ..+...+...-.-|+..+...+..++.
T Consensus       425 dtml~Vl~~aG~~V~~dv~~nll~LIa  451 (866)
T KOG1062|consen  425 DTMLKVLKTAGDFVNDDVVNNLLRLIA  451 (866)
T ss_pred             HHHHHHHHhcccccchhhHHHHHHHHh
Confidence            344445544433334344444444433

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.86  E-value=1e-08  Score=100.04  Aligned_cols=262  Identities=16%  Similarity=0.161  Sum_probs=171.7

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh--HHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCC-CC
Q 009568          161 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC--RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP-QP  237 (532)
Q Consensus       161 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~--~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~-~~  237 (532)
                      ++..++.+|+++.+.+|.+|+...+.++.--..|  -..+...|.  .|..-| ....++++-..+.++..+..... ..
T Consensus       605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~l-ge~ypEvLgsil~Ai~~I~sv~~~~~  681 (975)
T COG5181         605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENL-GEDYPEVLGSILKAICSIYSVHRFRS  681 (975)
T ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhc-CcccHHHHHHHHHHHHHHhhhhcccc
Confidence            4677788999999999999999888875321111  112222221  233334 45577887777777766654431 11


Q ss_pred             CcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCC
Q 009568          238 PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGD  317 (532)
Q Consensus       238 ~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~  317 (532)
                      ...-..+++|.|..+|++....+..+.+..++.++...++.+..---..+.-.|+..|.+.+.+++..|..++|.|+..-
T Consensus       682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ai  761 (975)
T COG5181         682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAI  761 (975)
T ss_pred             cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhc
Confidence            22235789999999999999999999999999999887776543333355666888888889999999999999988632


Q ss_pred             cchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHH
Q 009568          318 DFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISN  397 (532)
Q Consensus       318 ~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~n  397 (532)
                      .       ...++..|++-|+.. +...|.-..-+++-++..+..       -.++|.|+.=...++..|+.-.+.+++.
T Consensus       762 G-------PqdvL~~LlnnLkvq-eRq~RvctsvaI~iVae~cgp-------fsVlP~lm~dY~TPe~nVQnGvLkam~f  826 (975)
T COG5181         762 G-------PQDVLDILLNNLKVQ-ERQQRVCTSVAISIVAEYCGP-------FSVLPTLMSDYETPEANVQNGVLKAMCF  826 (975)
T ss_pred             C-------HHHHHHHHHhcchHH-HHHhhhhhhhhhhhhHhhcCc-------hhhHHHHHhcccCchhHHHHhHHHHHHH
Confidence            2       224555666666654 433333333333333321111       1267777776677788899999999998


Q ss_pred             hhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 009568          398 ATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENIL  442 (532)
Q Consensus       398 l~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~  442 (532)
                      +..........|+..  +.+.|-+.|.+.|+.-+..+...+..+.
T Consensus       827 mFeyig~~s~dYvy~--itPlleDAltDrD~vhRqta~nvI~Hl~  869 (975)
T COG5181         827 MFEYIGQASLDYVYS--ITPLLEDALTDRDPVHRQTAMNVIRHLV  869 (975)
T ss_pred             HHHHHHHHHHHHHHH--hhHHHHhhhcccchHHHHHHHHHHHHHh
Confidence            877554444555443  5667777787888766666655555443

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.82  E-value=6.5e-07  Score=89.57  Aligned_cols=334  Identities=12%  Similarity=0.111  Sum_probs=210.0

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh--HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q 009568          119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN--TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD  196 (532)
Q Consensus       119 i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~--~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~  196 (532)
                      +...+..|++.+ +.++..|+..++.++.--..+  -+.+...|  -.|...|....+++.-..+.++..|+..-.-.+.
T Consensus       801 ~stiL~rLnnks-a~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeypEvLgsILgAikaI~nvigm~km  877 (1172)
T KOG0213|consen  801 CSTILWRLNNKS-AKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKM  877 (1172)
T ss_pred             HHHHHHHhcCCC-hhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccHHHHHHHHHHHHHHHHhcccccc
Confidence            344556677777 899999999998887521111  11222233  4466778778888887777776666532100000


Q ss_pred             HHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCC-CCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCC
Q 009568          197 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ-PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT  275 (532)
Q Consensus       197 ~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~-~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~  275 (532)
                      .---.++++.|..+| ++....++.+++..+..+|...+. ......-.+.--|+.+|...+.+++..+..++++++..-
T Consensus       878 ~pPi~dllPrltPIL-knrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaI  956 (1172)
T KOG0213|consen  878 TPPIKDLLPRLTPIL-KNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAI  956 (1172)
T ss_pred             CCChhhhcccchHhh-hhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhc
Confidence            111245788999999 888899999999999999987643 222222333445677788888999999999999998432


Q ss_pred             hhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHH
Q 009568          276 NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN  355 (532)
Q Consensus       276 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n  355 (532)
                      .       -.+++..|++-|...+-..+....-+|+-.+..+.       -..++|.|+.=...+ +..|+...+.+++.
T Consensus       957 G-------PqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~-------pFtVLPalmneYrtP-e~nVQnGVLkalsf 1021 (1172)
T KOG0213|consen  957 G-------PQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCG-------PFTVLPALMNEYRTP-EANVQNGVLKALSF 1021 (1172)
T ss_pred             C-------HHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcC-------chhhhHHHHhhccCc-hhHHHHhHHHHHHH
Confidence            2       12456666666655544434333333333332221       124567777777777 78899999999988


Q ss_pred             HhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcC-------CCCH
Q 009568          356 ITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV-------CPDP  428 (532)
Q Consensus       356 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-------~~d~  428 (532)
                      +.....+.-...+. -+.|.|-+.|.+.|.--|..|+.++.+++.+..        ..|..+.++.+|+       ...|
T Consensus      1022 ~FeyigemskdYiy-av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~--------g~g~eda~iHLLN~iWpNIle~sP 1092 (1172)
T KOG0213|consen 1022 MFEYIGEMSKDYIY-AVTPLLEDALMDRDLVHRQTAMNVIKHLALGVP--------GTGCEDALIHLLNLIWPNILETSP 1092 (1172)
T ss_pred             HHHHHHHHhhhHHH-HhhHHHHHhhccccHHHHHHHHHHHHHHhcCCC--------CcCcHHHHHHHHHHhhhhhcCCCh
Confidence            87632222222222 267888899998899999999999999988642        2255556666554       3557


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCCC
Q 009568          429 RIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEE  500 (532)
Q Consensus       429 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~~  500 (532)
                      .++....+++..+-..-.           ...+         +..+.+=.-|+...|++..-.+++.++-.+
T Consensus      1093 hviqa~~e~~eg~r~~Lg-----------~~~~---------~~Y~~QGLFHParkVR~~yw~vyn~my~~~ 1144 (1172)
T KOG0213|consen 1093 HVIQAFDEAMEGLRVALG-----------PQAM---------LKYCLQGLFHPARKVRKRYWTVYNSMYHGS 1144 (1172)
T ss_pred             HHHHHHHHHHHHHHHHhc-----------hHHH---------HHHHHHhccCcHHHHHHHHHHHHHhHhhcc
Confidence            777777776665533211           1111         122233346888888888777777765543

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.82  E-value=6.5e-06  Score=82.51  Aligned_cols=307  Identities=16%  Similarity=0.171  Sum_probs=206.1

Q ss_pred             CChHHHHHHHHHHHHHhcCCCCCch-------hHhhh----CCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568           86 DDSSLQLEATTQFRKLLSIERSPPI-------EEVIQ----SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (532)
Q Consensus        86 ~~~~~~~~a~~~l~~l~~~~~~~~~-------~~~i~----~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  154 (532)
                      ++.++.......+++.+...+....       ..++.    .++-+-++.+|++.. |-+|..|+.++..+...-|+...
T Consensus       102 ~~tdvlmL~tn~~rkdl~S~n~ye~giAL~GLS~fvTpdLARDLa~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr  180 (877)
T KOG1059|consen  102 DDTDVLMLTTNLLRKDLNSSNVYEVGLALSGLSCIVTPDLARDLADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALR  180 (877)
T ss_pred             CCccHHHHHHHHHHHHhccCccchhhheecccccccCchhhHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHh
Confidence            3455666677777777663211111       11111    134566778888888 89999999999999875555433


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC
Q 009568          155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  234 (532)
Q Consensus       155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~  234 (532)
                           .++|.|..-|.++++.|+..|+.++|.++..+|..--     ..-|.+..++..+.+.=+.-..+..+.+|+--.
T Consensus       181 -----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL-----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplE  250 (877)
T KOG1059|consen  181 -----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL-----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLE  250 (877)
T ss_pred             -----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc-----cccHHHHHHHhccCCCeehHHHHHHHhhccccC
Confidence                 4579999999999999999999999999988886421     245667777766667666667777777777543


Q ss_pred             CCCCcccccchHHHHHHhhcCCC-HHHHHHHHHHHH--HhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHH
Q 009568          235 PQPPFDQVRPALPALAQLVHSND-EEVLTDACWALS--YLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVG  311 (532)
Q Consensus       235 ~~~~~~~~~~~l~~L~~lL~~~d-~~v~~~a~~~L~--~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~  311 (532)
                      |    ...+.+++.|..+++++. ..+...++.++.  +++.+.++....+ . -.++.|-.++.+.++.++.-++.+++
T Consensus       251 P----RLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi-q-LCvqKLr~fiedsDqNLKYlgLlam~  324 (877)
T KOG1059|consen  251 P----RLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI-Q-LCVQKLRIFIEDSDQNLKYLGLLAMS  324 (877)
T ss_pred             c----hhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH-H-HHHHHHhhhhhcCCccHHHHHHHHHH
Confidence            3    344678889999998764 345555655553  3343332221111 1 24567777888999999999999999


Q ss_pred             HhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCc-hhHHHH
Q 009568          312 NIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAE-FDIKKE  390 (532)
Q Consensus       312 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~-~~v~~~  390 (532)
                      .++...+...+.     --..++++|.+. ++.+|-.|...|--+..  .+.+..     ++..|+..+...+ ...|.+
T Consensus       325 KI~ktHp~~Vqa-----~kdlIlrcL~Dk-D~SIRlrALdLl~gmVs--kkNl~e-----IVk~LM~~~~~ae~t~yrde  391 (877)
T KOG1059|consen  325 KILKTHPKAVQA-----HKDLILRCLDDK-DESIRLRALDLLYGMVS--KKNLME-----IVKTLMKHVEKAEGTNYRDE  391 (877)
T ss_pred             HHhhhCHHHHHH-----hHHHHHHHhccC-CchhHHHHHHHHHHHhh--hhhHHH-----HHHHHHHHHHhccchhHHHH
Confidence            999877654443     245789999998 99999999999888765  333433     3455665555444 478888


Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcC
Q 009568          391 AAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV  424 (532)
Q Consensus       391 a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~  424 (532)
                      .+.-+..+|+..+...+.-|-.  .+..|+++..
T Consensus       392 ll~~II~iCS~snY~~ItdFEW--YlsVlveLa~  423 (877)
T KOG1059|consen  392 LLTRIISICSQSNYQYITDFEW--YLSVLVELAR  423 (877)
T ss_pred             HHHHHHHHhhhhhhhhhhhHHH--HHHHHHHHHh
Confidence            8888888887654333222211  3555555544

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.79  E-value=1.8e-06  Score=88.78  Aligned_cols=353  Identities=13%  Similarity=0.124  Sum_probs=217.3

Q ss_pred             HHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 009568           78 AMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVI  157 (532)
Q Consensus        78 ~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~  157 (532)
                      .+++.+.+.|-+.|+.|+.-|..=+... ....+.--+..++..++++|.+.+ .++|..|+.|++-+++.-++.+-.  
T Consensus         9 ~LlekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~~le--   84 (1233)
T KOG1824|consen    9 NLLEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKEDQLE--   84 (1233)
T ss_pred             HHHHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHHHHH--
Confidence            7888899999999999999888777653 333333334568899999999988 999999999999999744433221  


Q ss_pred             hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhh----hhh-hhHHHHHHHHHhhhccC
Q 009568          158 DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN----ERA-KLSMLRNATWTLSNFCR  232 (532)
Q Consensus       158 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~----~~~-~~~~~~~a~~~L~~L~~  232 (532)
                        ..+..|+.-+-+.....|..+.-.|......-+..........+++.+...+.    ... ...++..++..+..+..
T Consensus        85 --~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls  162 (1233)
T KOG1824|consen   85 --TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS  162 (1233)
T ss_pred             --HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence              12455665544444444544443333332222211222223334444444442    222 22345455544443332


Q ss_pred             CCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCC-CccchhhHHHHHH
Q 009568          233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP-SPSVLIPALRTVG  311 (532)
Q Consensus       233 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~al~~L~  311 (532)
                      .....-......++..++..+.++-..|+..++.+|+.++...+..   .. .+++..|..-|..+ .+.....-+.+|+
T Consensus       163 r~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~---ly-~~li~~Ll~~L~~~~q~~~~rt~Iq~l~  238 (1233)
T KOG1824|consen  163 RFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD---LY-VELIEHLLKGLSNRTQMSATRTYIQCLA  238 (1233)
T ss_pred             hhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHhccCCCCchHHHHHHHHHHH
Confidence            2211111244567777888888888899999999999998654422   11 25566666666543 4444455667788


Q ss_pred             HhhcCCcchhHHHhhcCchHHHHHHh---cCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc------
Q 009568          312 NIVTGDDFQTQCIITYGALPYLLGLL---THSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN------  382 (532)
Q Consensus       312 nl~~~~~~~~~~~~~~~~l~~L~~lL---~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~------  382 (532)
                      .++.........-. ..++|.+.+..   ... +.++|+.+..++..+...+|..+-+.+.. ++..++..+..      
T Consensus       239 ~i~r~ag~r~~~h~-~~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~rcp~ei~p~~pe-i~~l~l~yisYDPNy~y  315 (1233)
T KOG1824|consen  239 AICRQAGHRFGSHL-DKIVPLVADYCNKIEED-DDELREYCLQALESFLRRCPKEILPHVPE-IINLCLSYISYDPNYNY  315 (1233)
T ss_pred             HHHHHhcchhhccc-chhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHHhChhhhcccchH-HHHHHHHHhccCCCCCC
Confidence            88765442221111 25677777777   555 78899999999998887766655443321 33333333310      


Q ss_pred             -------------------------C---chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHH
Q 009568          383 -------------------------A---EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVC  434 (532)
Q Consensus       383 -------------------------~---~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~a  434 (532)
                                               +   ++.||++|+.++..++.. ..+....+.+ .+-+.++.-++...+.|..-+
T Consensus       316 d~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS-R~E~L~~~~q-~l~p~lI~RfkEREEnVk~dv  393 (1233)
T KOG1824|consen  316 DTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS-RLEMLPDFYQ-TLGPALISRFKEREENVKADV  393 (1233)
T ss_pred             CCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhc-cHHHHHHHHH-HhCHHHHHHHHHHhhhHHHHH
Confidence                                     0   246999999999998875 4455555444 466788888888888888777


Q ss_pred             HHHHHHHHHhh
Q 009568          435 LEGLENILKVG  445 (532)
Q Consensus       435 l~~L~~l~~~~  445 (532)
                      ..++..++..-
T Consensus       394 f~~yi~ll~qt  404 (1233)
T KOG1824|consen  394 FHAYIALLKQT  404 (1233)
T ss_pred             HHHHHHHHHcC
Confidence            77777777543

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.77  E-value=5.9e-08  Score=93.49  Aligned_cols=304  Identities=13%  Similarity=0.101  Sum_probs=194.8

Q ss_pred             HHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC-CCCCcccccchHHHHHHhhcCCCHH
Q 009568          181 VWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSNDEE  259 (532)
Q Consensus       181 ~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~  259 (532)
                      +.+|-.++..-...|.-+....+.++|+++| ..++.-+.-.++..++|+.-.- +-.......+++..|+.++.+.|..
T Consensus       410 ~l~LkS~SrSV~~LRTgL~d~~I~elLi~~L-s~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDda  488 (743)
T COG5369         410 VLFLKSMSRSVTFLRTGLLDYPIVELLIDAL-SNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDA  488 (743)
T ss_pred             HHHHHHhhHHHHHHHhhccccchHHHHHHHh-cCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhh
Confidence            3344455554455677777888999999999 5555555555666666666544 4445556689999999999999999


Q ss_pred             HHHHHHHHHHHhccCChhHHH-HHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcc---hhHHHhhc----CchH
Q 009568          260 VLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDF---QTQCIITY----GALP  331 (532)
Q Consensus       260 v~~~a~~~L~~l~~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~---~~~~~~~~----~~l~  331 (532)
                      ++....|.+..+..++++..+ ..+..-.+..++.+..++.+.++..++.++.|+...+..   ..+..++.    -+..
T Consensus       489 Lqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk  568 (743)
T COG5369         489 LQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFK  568 (743)
T ss_pred             hhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHH
Confidence            999999999999877654422 244456788999999999999999999999999874432   22222222    1455


Q ss_pred             HHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHHHhcC-----------chhHHHHHHHHHHHhh
Q 009568          332 YLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID-AGLVGPLVNLLQNA-----------EFDIKKEAAWAISNAT  399 (532)
Q Consensus       332 ~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~-----------~~~v~~~a~~aL~nl~  399 (532)
                      .++..+... +|-.-...|+.|.++++.+....+.++. ..++..+..+|...           ...+-..-..+..++.
T Consensus       569 ~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~  647 (743)
T COG5369         569 RLIDKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLS  647 (743)
T ss_pred             HHHHHHHhc-CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeeccc
Confidence            677777777 7777777799999998865554444442 33444444444321           1112122222233332


Q ss_pred             cCCCHHHHHHHHHcCCh--HHHHhhcC---CCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHH
Q 009568          400 SGGTHEQIKYLVREGCI--KPLCDLFV---CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKI  474 (532)
Q Consensus       400 ~~~~~~~~~~l~~~~~l--~~L~~lL~---~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l  474 (532)
                      ...+  ....    +..  +.+-.+=+   .++.++-....|.+.++.+..+..+...    ..-+.+..+.+.|.-+-+
T Consensus       648 e~~d--~f~r----~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtr----atveR~~iL~~~G~~e~l  717 (743)
T COG5369         648 ENSD--KFKR----LVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTR----ATVERIQILCANGIREWL  717 (743)
T ss_pred             cccc--cccc----ceecCCCccccccccCCCchhhhhccceEEEecccCccCCccch----hhHHHHHHHHHccHHHHH
Confidence            2111  1111    111  22222211   2334566677777777655433322111    233567889999999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHh
Q 009568          475 ENLQSHDNNEIYEKAVKILETY  496 (532)
Q Consensus       475 ~~L~~~~~~~v~~~a~~il~~~  496 (532)
                      ..+|.|+++.|++++..+++.+
T Consensus       718 ~k~q~~~Sl~vrek~~taL~~l  739 (743)
T COG5369         718 VKIQAKDSLIVREKIGTALENL  739 (743)
T ss_pred             HHHhccCcHHHHHHHHHHHHhh
Confidence            9999999999999999998754

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.75  E-value=3.4e-05  Score=70.49  Aligned_cols=339  Identities=15%  Similarity=0.176  Sum_probs=227.7

Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCc---hhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009568           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPP---IEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN  152 (532)
Q Consensus        76 l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~---~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~  152 (532)
                      .|.+-..|..++..+...++..+..++...+...   +..++..+++|.++.++...+ .++...|...+..++. .+..
T Consensus        84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrial-fpaa  161 (524)
T KOG4413|consen   84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIAL-FPAA  161 (524)
T ss_pred             hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHh-cHHH
Confidence            3555666777888899999999999987532112   445668999999999999888 8999999999999998 7778


Q ss_pred             HHHHHhCCChHHHH--HhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhc
Q 009568          153 TKVVIDHGAVPIFV--KLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF  230 (532)
Q Consensus       153 ~~~i~~~g~i~~L~--~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L  230 (532)
                      ...+.+......+-  .+-..-+.-.|-.+...+..+.+-++.....+-.+|.+..|..-+....|.-++.+++.....|
T Consensus       162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL  241 (524)
T KOG4413|consen  162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL  241 (524)
T ss_pred             HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence            88888777665443  2323345667777888888998888888888888998888888885557888888999999999


Q ss_pred             cCCCCCCCcccccchHHHHHHhhcC--CCHHHHHHHHHHHHHhccCChhH---HHHHHHh--CchHHHHHhhCCCCccch
Q 009568          231 CRGKPQPPFDQVRPALPALAQLVHS--NDEEVLTDACWALSYLSDGTNDK---IQAVIEA--GVCPRLVELLGHPSPSVL  303 (532)
Q Consensus       231 ~~~~~~~~~~~~~~~l~~L~~lL~~--~d~~v~~~a~~~L~~l~~~~~~~---~~~~~~~--~~l~~L~~lL~~~~~~v~  303 (532)
                      ........+....+++..+..++.-  ++|--.-.++...+.+.....-.   -+.+.+.  -++...+..+..+++...
T Consensus       242 aeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdai  321 (524)
T KOG4413|consen  242 AETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAI  321 (524)
T ss_pred             HHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHH
Confidence            8877667777778889988888863  34544444555554443221100   0111111  123444555677889999


Q ss_pred             hhHHHHHHHhhcCCcchhHHHhhcCchHHH----HHHhcCCCchhHHHHHHHHHHHHhcC---CHHHHH---------H-
Q 009568          304 IPALRTVGNIVTGDDFQTQCIITYGALPYL----LGLLTHSHKKSIKKEACWTISNITAG---NRDQIQ---------A-  366 (532)
Q Consensus       304 ~~al~~L~nl~~~~~~~~~~~~~~~~l~~L----~~lL~~~~~~~v~~~a~~~L~nl~~~---~~~~~~---------~-  366 (532)
                      ..|+.++|.+.+..+ ..+.++..| -|..    ......+ ...-+..+..+|.+++..   .++++.         . 
T Consensus       322 eaAiDalGilGSnte-GadlllkTg-ppaaehllarafdqn-ahakqeaaihaLaaIagelrlkpeqitDgkaeerlrcl  398 (524)
T KOG4413|consen  322 EAAIDALGILGSNTE-GADLLLKTG-PPAAEHLLARAFDQN-AHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCL  398 (524)
T ss_pred             HHHHHHHHhccCCcc-hhHHHhccC-ChHHHHHHHHHhccc-ccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHH
Confidence            999999999987554 555555544 3333    3333333 334566777888888752   222221         1 


Q ss_pred             HHH-------cCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHH-HHHHHcCChHHHHh
Q 009568          367 VID-------AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQI-KYLVREGCIKPLCD  421 (532)
Q Consensus       367 l~~-------~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~-~~l~~~~~l~~L~~  421 (532)
                      +.+       ..-+..+..+++.+.++++..+..++..++..  |-.. ..+...+++..+.+
T Consensus       399 ifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaq--PWalkeifakeefieiVtD  459 (524)
T KOG4413|consen  399 IFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQ--PWALKEIFAKEEFIEIVTD  459 (524)
T ss_pred             HHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcC--cHHHHHHhcCccceeeecc
Confidence            111       12245566667777899999999999999874  3333 33334566655544

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.73  E-value=1.1e-06  Score=85.45  Aligned_cols=363  Identities=17%  Similarity=0.122  Sum_probs=218.1

Q ss_pred             hhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch
Q 009568          114 IQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR  193 (532)
Q Consensus       114 i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~  193 (532)
                      ...+++|+.+.++.+.+ ..+++.|+..+.|++..- .......-..+...|.++..+.+..++. ++..+-.+..+-..
T Consensus        81 Y~~~iv~Pv~~cf~D~d-~~vRyyACEsLYNiaKv~-k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVt  157 (675)
T KOG0212|consen   81 YLEKIVPPVLNCFSDQD-SQVRYYACESLYNIAKVA-KGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVT  157 (675)
T ss_pred             HHHHhhHHHHHhccCcc-ceeeeHhHHHHHHHHHHh-ccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhcc
Confidence            45578999999999998 899999999999998721 1111112223445666666655555544 34444444222111


Q ss_pred             hHHHHHhcCChHHHHHHhh---hhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHH
Q 009568          194 CRDLVLSQGALIPLLAQLN---ERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSY  270 (532)
Q Consensus       194 ~~~~~~~~~~l~~L~~ll~---~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~  270 (532)
                      -++.   .--++.++.+|.   ...++..+...+.-+..|-..++..-......+++.|..+|.++.++|+.-+=.+++.
T Consensus       158 e~~~---tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~  234 (675)
T KOG0212|consen  158 ESAS---TFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSE  234 (675)
T ss_pred             cccc---ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            1110   112455555553   3457777777776666655443333344557788899999999999998666665655


Q ss_pred             hcc---CChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCch-hHH
Q 009568          271 LSD---GTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKK-SIK  346 (532)
Q Consensus       271 l~~---~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-~v~  346 (532)
                      +..   +++..   +--...++.++..+.++++.++..|+.-+..++.-.+... ...-+|++..++.++.+. .+ .++
T Consensus       235 fL~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~-e~~~i~  309 (675)
T KOG0212|consen  235 FLAEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDT-EEMSIK  309 (675)
T ss_pred             HHHHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCC-ccccHH
Confidence            431   22211   1112577888899999999999999888887776544332 234457888888888776 44 344


Q ss_pred             HHHHHH---HHHHhcCCHHHHHHHHHc-CCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhh
Q 009568          347 KEACWT---ISNITAGNRDQIQAVIDA-GLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDL  422 (532)
Q Consensus       347 ~~a~~~---L~nl~~~~~~~~~~l~~~-~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~l  422 (532)
                      ..+..+   +..++. .+...+. ++. .++..|...+.++..+.|..++.-+..+-.....+....  ...+...|..-
T Consensus       310 ~~a~~~n~~l~~l~s-~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h--~~~if~tLL~t  385 (675)
T KOG0212|consen  310 EYAQMVNGLLLKLVS-SERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVH--NDSIFLTLLKT  385 (675)
T ss_pred             HHHHHHHHHHHHHHh-hhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhh--ccHHHHHHHHh
Confidence            444333   222322 1111111 322 357788888888888999888877777766533332222  34578888899


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHH------HHhccHHHHHHHhcC-CCHHHHHHHHHHHHH
Q 009568          423 FVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLV------EEAEGLEKIENLQSH-DNNEIYEKAVKILET  495 (532)
Q Consensus       423 L~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~g~~~~l~~L~~~-~~~~v~~~a~~il~~  495 (532)
                      |.+.+.+|+..++..+..++...+......    .......++      -+.-|-=.+.+|+.- +.+.||..-..|+++
T Consensus       386 Lsd~sd~vvl~~L~lla~i~~s~~~~~~~~----fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a~ILe~  461 (675)
T KOG0212|consen  386 LSDRSDEVVLLALSLLASICSSSNSPNLRK----FLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIADILER  461 (675)
T ss_pred             hcCchhHHHHHHHHHHHHHhcCcccccHHH----HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHHHHHhc
Confidence            999999999999999999987654421000    011111111      223334455555433 344577777777764

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.68  E-value=1.1e-06  Score=86.22  Aligned_cols=333  Identities=16%  Similarity=0.152  Sum_probs=204.8

Q ss_pred             cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCC-CCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIER-SPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (532)
Q Consensus        75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~-~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  153 (532)
                      .+..+++.|++..+.++..|+.....++.--+ ......+...|.  .|.+.|.... |++.-..+.+++.|.+...-..
T Consensus       605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~y-pEvLgsil~Ai~~I~sv~~~~~  681 (975)
T COG5181         605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDY-PEVLGSILKAICSIYSVHRFRS  681 (975)
T ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCccc-HHHHHHHHHHHHHHhhhhcccc
Confidence            35667788899999999999887766643210 122333444444  3667777766 8888887777777765211000


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh---HHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhc
Q 009568          154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC---RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF  230 (532)
Q Consensus       154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~---~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L  230 (532)
                      ..---.|++|.|..+|++.+..+..+.+..++.||..+|++   |+-.   .+.-.|+..| .+.+.+++++|..++..+
T Consensus       682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWM---RIcfeLvd~L-ks~nKeiRR~A~~tfG~I  757 (975)
T COG5181         682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWM---RICFELVDSL-KSWNKEIRRNATETFGCI  757 (975)
T ss_pred             cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHH-HHhhHHHHHhhhhhhhhH
Confidence            00112489999999999999999999999999999777653   2221   1334567777 778899999999999998


Q ss_pred             cCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHH
Q 009568          231 CRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV  310 (532)
Q Consensus       231 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L  310 (532)
                      ++..      --..++..|+.-|+..+-..+....-+++-.+..+...       .++|.|+.=-..++..++.-.++++
T Consensus       758 s~ai------GPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf-------sVlP~lm~dY~TPe~nVQnGvLkam  824 (975)
T COG5181         758 SRAI------GPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPF-------SVLPTLMSDYETPEANVQNGVLKAM  824 (975)
T ss_pred             Hhhc------CHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch-------hhHHHHHhcccCchhHHHHhHHHHH
Confidence            8763      11345666666666555554444444444433322211       4677777777778888998888888


Q ss_pred             HHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHH--HHHHHHcCCHHHHHHHHhcCchhHH
Q 009568          311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ--IQAVIDAGLVGPLVNLLQNAEFDIK  388 (532)
Q Consensus       311 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~--~~~l~~~~~i~~L~~ll~~~~~~v~  388 (532)
                      +-+...........+ ..+.|.|-..|.+. ++.-|..|..++..++-+++..  .+..+.  ++..|..-+-.+.|.+.
T Consensus       825 ~fmFeyig~~s~dYv-y~itPlleDAltDr-D~vhRqta~nvI~Hl~Lnc~gtg~eda~IH--LlNllwpNIle~sPhvi  900 (975)
T COG5181         825 CFMFEYIGQASLDYV-YSITPLLEDALTDR-DPVHRQTAMNVIRHLVLNCPGTGDEDAAIH--LLNLLWPNILEPSPHVI  900 (975)
T ss_pred             HHHHHHHHHHHHHHH-HHhhHHHHhhhccc-chHHHHHHHHHHHHHhcCCCCcccHHHHHH--HHHHhhhhccCCCcHHH
Confidence            877754332222111 24678888888888 9999999999999998654321  122221  22223322333456665


Q ss_pred             HHHH---HHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 009568          389 KEAA---WAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILK  443 (532)
Q Consensus       389 ~~a~---~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~  443 (532)
                      ....   .++.+....  .....|         +.+-|-++...|+. ..|...+++.
T Consensus       901 ~~~~Eg~e~~~~~lg~--g~~m~Y---------v~qGLFHPs~~VRk-~ywtvyn~my  946 (975)
T COG5181         901 QSFDEGMESFATVLGS--GAMMKY---------VQQGLFHPSSTVRK-RYWTVYNIMY  946 (975)
T ss_pred             HHHHHHHHHHHHHhcc--HHHHHH---------HHHhccCchHHHHH-HHHHHHhhhh
Confidence            4444   444444332  223333         33334456666664 4455555543

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.67  E-value=2.6e-06  Score=87.72  Aligned_cols=371  Identities=15%  Similarity=0.161  Sum_probs=207.0

Q ss_pred             CChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHH
Q 009568           86 DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIF  165 (532)
Q Consensus        86 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L  165 (532)
                      .|.+++..|+.++..++..-. +... .--...+|.|++-|..   .-.+..|+++++.|+...-.....-+-..+++.+
T Consensus       582 ~DqeVkeraIscmgq~i~~fg-D~l~-~eL~~~L~il~eRl~n---EiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l  656 (1233)
T KOG1824|consen  582 SDQEVKERAISCMGQIIANFG-DFLG-NELPRTLPILLERLGN---EITRLTAVKALTLIAMSPLDIDLSPVLTEILPEL  656 (1233)
T ss_pred             ccHHHHHHHHHHHHHHHHHHh-hhhh-hhhHHHHHHHHHHHhc---hhHHHHHHHHHHHHHhccceeehhhhHHHHHHHH
Confidence            456788888888887776421 1111 1112367777777765   4568889999999998432222122223567888


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhhCCCc-hhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccc
Q 009568          166 VKLLASPSDDVREQAVWALGNVAGDSP-RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRP  244 (532)
Q Consensus       166 ~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~  244 (532)
                      ..++......++..++.++-.+..... ......++ .++..+..++ ...+..+...++.+|..+....|..-......
T Consensus       657 ~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e-~vL~el~~Li-sesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~  734 (1233)
T KOG1824|consen  657 ASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLE-AVLVELPPLI-SESDLHVTQLAVAFLTTLAIIQPSSLLKISNP  734 (1233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH-HHHHHhhhhh-hHHHHHHHHHHHHHHHHHHhcccHHHHHHhhh
Confidence            888877666777777766666642211 11111111 1344455555 66678888889999998888876555555566


Q ss_pred             hHHHHHHhhcCCCHH--HHHH--------------------------------------------HHHHHHHhccCChhH
Q 009568          245 ALPALAQLVHSNDEE--VLTD--------------------------------------------ACWALSYLSDGTNDK  278 (532)
Q Consensus       245 ~l~~L~~lL~~~d~~--v~~~--------------------------------------------a~~~L~~l~~~~~~~  278 (532)
                      +++.++.+++++--.  ....                                            .+.|.+.++...++.
T Consensus       735 iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~  814 (1233)
T KOG1824|consen  735 ILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQK  814 (1233)
T ss_pred             hHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhcccc
Confidence            777777766654211  1111                                            111111111111100


Q ss_pred             HHHHHHhCchHHHHHhhC--CCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHH
Q 009568          279 IQAVIEAGVCPRLVELLG--HPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNI  356 (532)
Q Consensus       279 ~~~~~~~~~l~~L~~lL~--~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl  356 (532)
                      .     ..+...++.-+.  ..+..++.-|+..+|.+-.+.+...    ..++-..++..+.++ +.+++..|..+||++
T Consensus       815 s-----~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~----~~e~~~~iieaf~sp-~edvksAAs~ALGsl  884 (1233)
T KOG1824|consen  815 S-----KSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSP----QNELKDTIIEAFNSP-SEDVKSAASYALGSL  884 (1233)
T ss_pred             c-----hhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCc----chhhHHHHHHHcCCC-hHHHHHHHHHHhhhh
Confidence            0     011222222222  2355677788888888887665322    224455788999999 999999999999999


Q ss_pred             hcCCHHH-HHHHHH----------------------------cCCHHHHHHHHh----cCchhHHHHHHHHHHHhhcCCC
Q 009568          357 TAGNRDQ-IQAVID----------------------------AGLVGPLVNLLQ----NAEFDIKKEAAWAISNATSGGT  403 (532)
Q Consensus       357 ~~~~~~~-~~~l~~----------------------------~~~i~~L~~ll~----~~~~~v~~~a~~aL~nl~~~~~  403 (532)
                      +.|+-.. +..+++                            ...++.+..+|.    .....+|.-.+.+|+.++... 
T Consensus       885 ~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~e-  963 (1233)
T KOG1824|consen  885 AVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIE-  963 (1233)
T ss_pred             hcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCC-
Confidence            9975432 211111                            001122222221    123334555555555555542 


Q ss_pred             HHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCH
Q 009568          404 HEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNN  483 (532)
Q Consensus       404 ~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~  483 (532)
                      ++        .+++.|...+.++.+..+..++.++.-.+.....         ...++....     +...-.+..+++.
T Consensus       964 pe--------sLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~---------~id~~lk~~-----ig~fl~~~~dpDl 1021 (1233)
T KOG1824|consen  964 PE--------SLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQ---------PIDPLLKQQ-----IGDFLKLLRDPDL 1021 (1233)
T ss_pred             hH--------HHHHHHHHHhcCCCcchhhhhhheeeeeecCCCC---------ccCHHHHHH-----HHHHHHHHhCCch
Confidence            22        3577888888888888888888877655543221         122222211     2344455667777


Q ss_pred             HHHHHHHHHHHHh
Q 009568          484 EIYEKAVKILETY  496 (532)
Q Consensus       484 ~v~~~a~~il~~~  496 (532)
                      +|+..|...+...
T Consensus      1022 ~VrrvaLvv~nSa 1034 (1233)
T KOG1824|consen 1022 EVRRVALVVLNSA 1034 (1233)
T ss_pred             hHHHHHHHHHHHH
Confidence            7777776655543

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.66  E-value=1.5e-06  Score=84.57  Aligned_cols=318  Identities=12%  Similarity=0.108  Sum_probs=200.5

Q ss_pred             cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (532)
Q Consensus        75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  154 (532)
                      .+++++.+++..|..++..|+..+-+++..-+....  ..-..+...+.++..+.+ ..++.. +..+-.+..+-.....
T Consensus        85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~--~~Fn~iFdvL~klsaDsd-~~V~~~-aeLLdRLikdIVte~~  160 (675)
T KOG0212|consen   85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVL--VYFNEIFDVLCKLSADSD-QNVRGG-AELLDRLIKDIVTESA  160 (675)
T ss_pred             hhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcc--cchHHHHHHHHHHhcCCc-cccccH-HHHHHHHHHHhccccc
Confidence            578999999999999999999999888764322111  122335566777766665 455443 3333333221100000


Q ss_pred             -HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHH-HhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccC
Q 009568          155 -VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV-LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR  232 (532)
Q Consensus       155 -~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~-~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~  232 (532)
                       .+-=.+++|.|-.-+...++..|...+.-|..+-.. |. .+++ .-..+++.|+..| .+++.+++..+-.+++++..
T Consensus       161 ~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~-P~-~~m~~yl~~~ldGLf~~L-sD~s~eVr~~~~t~l~~fL~  237 (675)
T KOG0212|consen  161 STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV-PD-LEMISYLPSLLDGLFNML-SDSSDEVRTLTDTLLSEFLA  237 (675)
T ss_pred             cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC-Cc-HHHHhcchHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHH
Confidence             111123455555555557788888777777766332 32 2232 1223567777778 67778888877777777765


Q ss_pred             CC-CCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCcc-chhhHHHH-
Q 009568          233 GK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPS-VLIPALRT-  309 (532)
Q Consensus       233 ~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-v~~~al~~-  309 (532)
                      .- ..+........++.++.-+.++++.++..|+.-+..+..-.+.. -...-+|++..+++++.+.+.. ++..+... 
T Consensus       238 eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~-~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n  316 (675)
T KOG0212|consen  238 EIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD-LLLYLSGILTAILPCLSDTEEMSIKEYAQMVN  316 (675)
T ss_pred             HHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc-hhhhhhhhhhhcccCCCCCccccHHHHHHHHH
Confidence            54 33444456778899999999999999988877776666444432 2233457888888888876653 44333322 


Q ss_pred             --HHHhhcCCcchhHHHhhc-CchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchh
Q 009568          310 --VGNIVTGDDFQTQCIITY-GALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFD  386 (532)
Q Consensus       310 --L~nl~~~~~~~~~~~~~~-~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~  386 (532)
                        +..++.......+  ++. .++..+.+.+.+. ..+.|-.+..-+..+-...+.++- .....+++.|+.-|.+.+.+
T Consensus       317 ~~l~~l~s~~~~~~~--id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~ql~-~h~~~if~tLL~tLsd~sd~  392 (675)
T KOG0212|consen  317 GLLLKLVSSERLKEE--IDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPGQLL-VHNDSIFLTLLKTLSDRSDE  392 (675)
T ss_pred             HHHHHHHhhhhhccc--cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcchhh-hhccHHHHHHHHhhcCchhH
Confidence              2222221111111  332 3677888888888 888888888666666554454432 22456899999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCH
Q 009568          387 IKKEAAWAISNATSGGTH  404 (532)
Q Consensus       387 v~~~a~~aL~nl~~~~~~  404 (532)
                      |...++..+.+++...+.
T Consensus       393 vvl~~L~lla~i~~s~~~  410 (675)
T KOG0212|consen  393 VVLLALSLLASICSSSNS  410 (675)
T ss_pred             HHHHHHHHHHHHhcCccc
Confidence            999999999999986543

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.66  E-value=2.3e-06  Score=86.83  Aligned_cols=338  Identities=17%  Similarity=0.175  Sum_probs=213.0

Q ss_pred             cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (532)
Q Consensus        75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  154 (532)
                      .++.++....++++.++..|++.+..+--       ..++ .-+...+.+.+++.+ +.+|..|+-+..++-..+.   +
T Consensus        87 avnt~~kD~~d~np~iR~lAlrtm~~l~v-------~~i~-ey~~~Pl~~~l~d~~-~yvRktaa~~vakl~~~~~---~  154 (734)
T KOG1061|consen   87 AVNTFLKDCEDPNPLIRALALRTMGCLRV-------DKIT-EYLCDPLLKCLKDDD-PYVRKTAAVCVAKLFDIDP---D  154 (734)
T ss_pred             hhhhhhccCCCCCHHHHHHHhhceeeEee-------hHHH-HHHHHHHHHhccCCC-hhHHHHHHHHHHHhhcCCh---h
Confidence            34444444455556655555554433321       1111 125667888888888 9999999999988877444   4


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC
Q 009568          155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  234 (532)
Q Consensus       155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~  234 (532)
                      .+.+.|.++.|-.++.++++.+..+|+.+|..|....+..-..    .....++..+....+.-.-..-+..|-.++...
T Consensus       155 ~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~----~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~  230 (734)
T KOG1061|consen  155 LVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLL----ELNPQLINKLLEALNECTEWGQIFILDCLAEYV  230 (734)
T ss_pred             hccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcc----cccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcC
Confidence            5678899999999999999999999999999998665431111    122233322222223333344455666666665


Q ss_pred             CCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhh
Q 009568          235 PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV  314 (532)
Q Consensus       235 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~  314 (532)
                      |... .....++..+...|.+.++.+...+...+.++....... ...+-..+-+.++.++.... .+...|++-+.-+.
T Consensus       231 p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~-~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil  307 (734)
T KOG1061|consen  231 PKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQV-NELLFKKVAPPLVTLLSSES-EIQYVALRNINLIL  307 (734)
T ss_pred             CCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHH-HHHHHHHhcccceeeecccc-hhhHHHHhhHHHHH
Confidence            5444 444567777888888888888888888888877654443 23333367777888887776 77777777666665


Q ss_pred             cCCcchhHHH-------------hhcCchHHHHHHh----------------cCCCchhHHHHHHHHHHHHhcCCHHHHH
Q 009568          315 TGDDFQTQCI-------------ITYGALPYLLGLL----------------THSHKKSIKKEACWTISNITAGNRDQIQ  365 (532)
Q Consensus       315 ~~~~~~~~~~-------------~~~~~l~~L~~lL----------------~~~~~~~v~~~a~~~L~nl~~~~~~~~~  365 (532)
                      ...+.....-             ++..-++.+..+.                ..- +.+..+++.+++++++..-.+.  
T Consensus       308 ~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatev-D~~fvrkaIraig~~aik~e~~--  384 (734)
T KOG1061|consen  308 QKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEV-DVDFVRKAVRAIGRLAIKAEQS--  384 (734)
T ss_pred             HhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhh-CHHHHHHHHHHhhhhhhhhhhh--
Confidence            4433211100             0001112222211                122 6777889999999998743321  


Q ss_pred             HHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCC-CCHHHHHHHHHHHHHHHHh
Q 009568          366 AVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC-PDPRIVTVCLEGLENILKV  444 (532)
Q Consensus       366 ~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~-~d~~v~~~al~~L~~l~~~  444 (532)
                          .+.++.|++++..+...+..+++..+..+...... ..+     .++..++..+++ .+|+.+....|.+..-...
T Consensus       385 ----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~-~~~-----~vv~~l~~~~~sl~epeak~amiWilg~y~~~  454 (734)
T KOG1061|consen  385 ----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPN-KYE-----SVVAILCENLDSLQEPEAKAALIWILGEYAER  454 (734)
T ss_pred             ----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCC-chh-----hhhhhhcccccccCChHHHHHHHHHHhhhhhc
Confidence                56889999999988777888888899888875432 112     245566666654 6777777777777655443

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=98.64  E-value=1.1e-05  Score=84.34  Aligned_cols=258  Identities=16%  Similarity=0.129  Sum_probs=174.5

Q ss_pred             hHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHH
Q 009568          204 LIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVI  283 (532)
Q Consensus       204 l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~  283 (532)
                      ++.+-.+. .+.+..++...+.....+.---  +....+....|.+...++..++.|+.+..+.+..+-...+..-...+
T Consensus       400 lp~~~~lv-~d~~~~vr~a~a~~~~~~~p~~--~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~  476 (759)
T KOG0211|consen  400 LPEVQVLV-LDNALHVRSALASVITGLSPIL--PKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTV  476 (759)
T ss_pred             hHHHHHHH-hcccchHHHHHhccccccCccC--CcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhh
Confidence            34444443 4555666665555554444322  23334567788888899999999999999888666544333323345


Q ss_pred             HhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc--CCH
Q 009568          284 EAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA--GNR  361 (532)
Q Consensus       284 ~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~  361 (532)
                      ....++.+..+-.+..+.++...++.+..++....   ..+++...-+.+...+.+. ...+++.|+..+.-++.  |..
T Consensus       477 s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~~l~~l~~~~G~~  552 (759)
T KOG0211|consen  477 SNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDH-VYSIREAAARNLPALVETFGSE  552 (759)
T ss_pred             hhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhh-HHHHHHHHHHHhHHHHHHhCcc
Confidence            55778888888888889999999999988886433   2344545556666666665 67899999998888876  321


Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHH
Q 009568          362 DQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENI  441 (532)
Q Consensus       362 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l  441 (532)
                      -.+     ...++.++.....++...|...+.++.-++...+.+.    ....+++.+.++..++.+.|+..++..|..+
T Consensus       553 w~~-----~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei----~~~~Llp~~~~l~~D~vanVR~nvak~L~~i  623 (759)
T KOG0211|consen  553 WAR-----LEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI----TCEDLLPVFLDLVKDPVANVRINVAKHLPKI  623 (759)
T ss_pred             hhH-----HHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH----HHHHHhHHHHHhccCCchhhhhhHHHHHHHH
Confidence            111     2366777777776678899999999988776444333    2335789999999999999999999999988


Q ss_pred             HHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHH
Q 009568          442 LKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKIL  493 (532)
Q Consensus       442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il  493 (532)
                      ...-...                ..+......++.|-.+++.+++..|..+.
T Consensus       624 ~~~L~~~----------------~~~~~v~pll~~L~~d~~~dvr~~a~~a~  659 (759)
T KOG0211|consen  624 LKLLDES----------------VRDEEVLPLLETLSSDQELDVRYRAILAF  659 (759)
T ss_pred             HhhcchH----------------HHHHHHHHHHHHhccCcccchhHHHHHHH
Confidence            8754332                12233346667777777777776665443

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.64  E-value=1.6e-06  Score=90.05  Aligned_cols=254  Identities=17%  Similarity=0.201  Sum_probs=194.7

Q ss_pred             ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (532)
Q Consensus        74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  153 (532)
                      +.+|.+++.|-|+  .-++.|+..|.+++... ...+..-..-|+.|..+++|+++- .+++..-+.+-+.|..-++.+.
T Consensus       472 eQLPiVLQVLLSQ--vHRlRAL~LL~RFLDlG-pWAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ  547 (1387)
T KOG1517|consen  472 EQLPIVLQVLLSQ--VHRLRALVLLARFLDLG-PWAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQ  547 (1387)
T ss_pred             HhcchHHHHHHHH--HHHHHHHHHHHHHhccc-hhhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhH
Confidence            4667777777663  34677899999998764 566777778899999999999998 8999999999999888788888


Q ss_pred             HHHHhCCChHHHHHhhCC-C--CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhc
Q 009568          154 KVVIDHGAVPIFVKLLAS-P--SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF  230 (532)
Q Consensus       154 ~~i~~~g~i~~L~~lL~~-~--~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L  230 (532)
                      ..+++.++-..+++.|.. +  +++-|..|+.+|+.++..-+.-+..+++.+.+...+..+..+..+-++.-++-+|+.|
T Consensus       548 ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~L  627 (1387)
T KOG1517|consen  548 ADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRL  627 (1387)
T ss_pred             HHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence            889988888888888876 2  3688999999999999887777888889888888888885545677888899999999


Q ss_pred             cCCCCCCC-cccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccC----ChhHHHHH------------HHhCch---HH
Q 009568          231 CRGKPQPP-FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG----TNDKIQAV------------IEAGVC---PR  290 (532)
Q Consensus       231 ~~~~~~~~-~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~----~~~~~~~~------------~~~~~l---~~  290 (532)
                      -.+.+... .-....+-..|..+|.++-++|+..|+.+|+.+..+    .+++...+            ++.-+.   -.
T Consensus       628 W~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~  707 (1387)
T KOG1517|consen  628 WEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMS  707 (1387)
T ss_pred             hhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHH
Confidence            88864333 334467788899999999999999999999998865    33332222            121122   25


Q ss_pred             HHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchH
Q 009568          291 LVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALP  331 (532)
Q Consensus       291 L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~  331 (532)
                      ++.++++..+-++.+..-+|..++.+...+...+.-...++
T Consensus       708 ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va~n~~~~  748 (1387)
T KOG1517|consen  708 LLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVAGNYLLP  748 (1387)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHhhhhccc
Confidence            66677888888888888888888877765544443333333

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.62  E-value=3.8e-05  Score=76.46  Aligned_cols=328  Identities=17%  Similarity=0.193  Sum_probs=209.0

Q ss_pred             cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (532)
Q Consensus        75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  154 (532)
                      .+..+++.+..+.+.+|.....++..+..........     -+.+.+.+++.... ..-+..|++.+..+..+.  ...
T Consensus        97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~-----~~l~~l~~ll~~~~-~~~~~~aa~~~ag~v~g~--~i~  168 (569)
T KOG1242|consen   97 IIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGE-----YVLELLLELLTSTK-IAERAGAAYGLAGLVNGL--GIE  168 (569)
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHH-----HHHHHHHHHhcccc-HHHHhhhhHHHHHHHcCc--HHh
Confidence            4677888888888999998888888776543222222     25777888888777 788999999999988754  334


Q ss_pred             HHHhCCChHHHHHhhCCCCHHH-HHHHHHHHHHhhC-CCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccC
Q 009568          155 VVIDHGAVPIFVKLLASPSDDV-REQAVWALGNVAG-DSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR  232 (532)
Q Consensus       155 ~i~~~g~i~~L~~lL~~~~~~v-~~~a~~~L~nl~~-~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~  232 (532)
                      .+.+.+++..|...+.+..... ++.+..+.-..+. -++.....+.  ..++.++... .+..+.++..+..+...+.+
T Consensus       169 ~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv--~~lp~il~~~-~d~~~~Vr~Aa~~a~kai~~  245 (569)
T KOG1242|consen  169 SLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIV--PILPSILTNF-GDKINKVREAAVEAAKAIMR  245 (569)
T ss_pred             hhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHH--hhHHHHHHHh-hccchhhhHHHHHHHHHHHH
Confidence            5666788899998887744333 3323322222221 1111111111  1244444444 44567777777776666554


Q ss_pred             CCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHH
Q 009568          233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN  312 (532)
Q Consensus       233 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~n  312 (532)
                      .-   ....++.++|.++.-+....+.....++..++.++...+.+.... -..++|.+...|.+..+.++..+..+|-.
T Consensus       246 ~~---~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~-lp~iiP~lsevl~DT~~evr~a~~~~l~~  321 (569)
T KOG1242|consen  246 CL---SAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLC-LPDLIPVLSEVLWDTKPEVRKAGIETLLK  321 (569)
T ss_pred             hc---CcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHH-HhHhhHHHHHHHccCCHHHHHHHHHHHHH
Confidence            32   122334566666665555577888899999998888888775544 44899999999999999999999998888


Q ss_pred             hhcCCcc-hhHHHh------------------------------hcCchHHHHHHh----cCCCchhHHHHHHHHHHHHh
Q 009568          313 IVTGDDF-QTQCII------------------------------TYGALPYLLGLL----THSHKKSIKKEACWTISNIT  357 (532)
Q Consensus       313 l~~~~~~-~~~~~~------------------------------~~~~l~~L~~lL----~~~~~~~v~~~a~~~L~nl~  357 (532)
                      +++--+. .++.++                              +.-.+..++.+|    ... +..+++.++.++.|++
T Consensus       322 ~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eR-st~~kr~t~~IidNm~  400 (569)
T KOG1242|consen  322 FGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAER-STSIKRKTAIIIDNMC  400 (569)
T ss_pred             HHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhc-cchhhhhHHHHHHHHH
Confidence            8753221 111110                              111233333333    333 5677899999999999


Q ss_pred             c--CCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcC
Q 009568          358 A--GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV  424 (532)
Q Consensus       358 ~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~  424 (532)
                      .  .++..+..++.. ++|.|-..+....|++|..+++||+.+...-....   +  .+.++-+.+.+.
T Consensus       401 ~LveDp~~lapfl~~-Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~---f--~d~~p~l~e~~~  463 (569)
T KOG1242|consen  401 KLVEDPKDLAPFLPS-LLPGLKENLDDAVPEVRAVAARALGALLERLGEVS---F--DDLIPELSETLT  463 (569)
T ss_pred             HhhcCHHHHhhhHHH-HhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhc---c--cccccHHHHhhc
Confidence            7  346555555543 67777777777789999999999988876422111   1  345555555554

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.61  E-value=2.5e-05  Score=79.18  Aligned_cols=284  Identities=20%  Similarity=0.240  Sum_probs=181.9

Q ss_pred             HhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCC
Q 009568          124 EFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGA  203 (532)
Q Consensus       124 ~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~  203 (532)
                      ++..+.. +-+|..|+.++..+-+-+++....+.     ..+-.+|.+.++.|.-.|+.++-.+|-+.-   +.+  .+-
T Consensus       150 ~~~~D~s-~yVRk~AA~AIpKLYsLd~e~k~qL~-----e~I~~LLaD~splVvgsAv~AF~evCPerl---dLI--Hkn  218 (968)
T KOG1060|consen  150 KAVTDPS-PYVRKTAAHAIPKLYSLDPEQKDQLE-----EVIKKLLADRSPLVVGSAVMAFEEVCPERL---DLI--HKN  218 (968)
T ss_pred             HHhcCCc-HHHHHHHHHhhHHHhcCChhhHHHHH-----HHHHHHhcCCCCcchhHHHHHHHHhchhHH---HHh--hHH
Confidence            4445566 88999999999998887777776554     555667888888888888888888875422   111  223


Q ss_pred             hHHHHHHhhhhhhhHHHHHHHHHhhhccCCC-CCC-------------------------C---cccccchHHHHHHhhc
Q 009568          204 LIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQP-------------------------P---FDQVRPALPALAQLVH  254 (532)
Q Consensus       204 l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~-------------------------~---~~~~~~~l~~L~~lL~  254 (532)
                      ...++++| .+-+.=-+..++.+|..-|+.. +.+                         +   ..-..-++...-.+|.
T Consensus       219 yrklC~ll-~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~  297 (968)
T KOG1060|consen  219 YRKLCRLL-PDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQ  297 (968)
T ss_pred             HHHHHhhc-cchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHh
Confidence            55566666 2222222222333333333332 111                         0   0111234555567788


Q ss_pred             CCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHH
Q 009568          255 SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLL  334 (532)
Q Consensus       255 ~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~  334 (532)
                      +.++.|...++.++++++....  .     ..++..|+.+|.++ ..++...+..+..++...+.    ++    .|.+-
T Consensus       298 S~n~sVVmA~aql~y~lAP~~~--~-----~~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~~~----lF----~P~lK  361 (968)
T KOG1060|consen  298 SRNPSVVMAVAQLFYHLAPKNQ--V-----TKIAKALVRLLRSN-REVQYVVLQNIATISIKRPT----LF----EPHLK  361 (968)
T ss_pred             cCCcHHHHHHHhHHHhhCCHHH--H-----HHHHHHHHHHHhcC-CcchhhhHHHHHHHHhcchh----hh----hhhhh
Confidence            8999999999999999984432  1     25677888877754 46777788888877765442    22    24444


Q ss_pred             HHhc-CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc
Q 009568          335 GLLT-HSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVRE  413 (532)
Q Consensus       335 ~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~  413 (532)
                      .++- ++....++..-..+|++|+...  .+..     +++.+...+.+.+.++...|..||+.++.... .     +..
T Consensus       362 sFfv~ssDp~~vk~lKleiLs~La~es--ni~~-----ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~-s-----v~~  428 (968)
T KOG1060|consen  362 SFFVRSSDPTQVKILKLEILSNLANES--NISE-----ILRELQTYIKSSDRSFAAAAVKAIGRCASRIG-S-----VTD  428 (968)
T ss_pred             ceEeecCCHHHHHHHHHHHHHHHhhhc--cHHH-----HHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC-c-----hhh
Confidence            4442 2312356666677888887532  1222     45677778888887888888899988876432 1     223


Q ss_pred             CChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhh
Q 009568          414 GCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAE  448 (532)
Q Consensus       414 ~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~  448 (532)
                      .++.-|+.++++.|..|+..+...|..+++.....
T Consensus       429 tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~  463 (968)
T KOG1060|consen  429 TCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAE  463 (968)
T ss_pred             HHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHH
Confidence            47888889999999989888888888888776554

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.61  E-value=1.8e-06  Score=82.07  Aligned_cols=272  Identities=17%  Similarity=0.187  Sum_probs=181.4

Q ss_pred             hhHhhhCCcHHHHHHhhcCCCC-HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHh
Q 009568          110 IEEVIQSGVVPRFVEFLMREDY-PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNV  187 (532)
Q Consensus       110 ~~~~i~~g~i~~Lv~lL~~~~~-~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl  187 (532)
                      .+.+...|.+..|+.++..++. ..++.+|+..|-.+..  .++++.++..| +..++.+-+. ..+++....+.+|.++
T Consensus       173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m  249 (832)
T KOG3678|consen  173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM  249 (832)
T ss_pred             hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence            3455667899999999998872 3569999999999886  77888888877 5555554443 5688999999999999


Q ss_pred             hCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC--CCCCcccccchHHHHHHhhcCCCHHHHHHHH
Q 009568          188 AGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK--PQPPFDQVRPALPALAQLVHSNDEEVLTDAC  265 (532)
Q Consensus       188 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~--~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~  265 (532)
                      ..++......+++.|++..++-.. ...++.+++.+..+|.|++-+.  .....+..+.+-..|..+-.+.|+-++.++|
T Consensus       250 FKHSeet~~~Lvaa~~lD~vl~~~-rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC  328 (832)
T KOG3678|consen  250 FKHSEETCQRLVAAGGLDAVLYWC-RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC  328 (832)
T ss_pred             hhhhHHHHHHHHhhcccchheeec-ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence            998888888888999999988877 6678999999999999998775  2222333345556677777777888999999


Q ss_pred             HHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhH
Q 009568          266 WALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSI  345 (532)
Q Consensus       266 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v  345 (532)
                      .+++.++.+.. .-..+..+|.+..+-.++..-++.-...   --...+.+.        ...-++.|+.+|.+. .-+.
T Consensus       329 lAV~vlat~KE-~E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG~--------~~d~LqRLvPlLdS~-R~EA  395 (832)
T KOG3678|consen  329 LAVAVLATNKE-VEREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQGR--------GPDDLQRLVPLLDSN-RLEA  395 (832)
T ss_pred             HHHhhhhhhhh-hhHHHhhccchhhhhhhhhccCcchhhh---hhhhhhccC--------ChHHHHHhhhhhhcc-hhhh
Confidence            99999987644 2244556666665555555544321110   000111111        113577888899866 5455


Q ss_pred             HHHHHHHHHHHhc-CC-HHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009568          346 KKEACWTISNITA-GN-RDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNA  398 (532)
Q Consensus       346 ~~~a~~~L~nl~~-~~-~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl  398 (532)
                      +.-+++-++.=+. .. ....+.+-+-|.|..|-++..+.+.--.+-|..+|.-+
T Consensus       396 q~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtvi  450 (832)
T KOG3678|consen  396 QCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVI  450 (832)
T ss_pred             hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence            5444444443222 11 11122334667888888888876654444444444433

>TIGR02270 conserved hypothetical protein

Probab=98.60  E-value=1.2e-05  Score=79.19  Aligned_cols=241  Identities=17%  Similarity=0.053  Sum_probs=163.9

Q ss_pred             cHHHHHhhhc-CCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568           75 SLPAMVAGVW-SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (532)
Q Consensus        75 ~l~~lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  153 (532)
                      .++.++..|. .+++.+...++..+...   +  .+       ..+..|+..|.+.+ +.++..++.+|+.+-.      
T Consensus        55 a~~~L~~aL~~d~~~ev~~~aa~al~~~---~--~~-------~~~~~L~~~L~d~~-~~vr~aaa~ALg~i~~------  115 (410)
T TIGR02270        55 ATELLVSALAEADEPGRVACAALALLAQ---E--DA-------LDLRSVLAVLQAGP-EGLCAGIQAALGWLGG------  115 (410)
T ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHhcc---C--Ch-------HHHHHHHHHhcCCC-HHHHHHHHHHHhcCCc------
Confidence            4566777774 45566665555444321   1  11       13788888888877 7899998888876544      


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCC
Q 009568          154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG  233 (532)
Q Consensus       154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~  233 (532)
                           ....+.|+.+|.+.++.++..++.+++....            ...+.+..+| ++.++.++..++.+|..+...
T Consensus       116 -----~~a~~~L~~~L~~~~p~vR~aal~al~~r~~------------~~~~~L~~~L-~d~d~~Vra~A~raLG~l~~~  177 (410)
T TIGR02270       116 -----RQAEPWLEPLLAASEPPGRAIGLAALGAHRH------------DPGPALEAAL-THEDALVRAAALRALGELPRR  177 (410)
T ss_pred             -----hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc------------ChHHHHHHHh-cCCCHHHHHHHHHHHHhhccc
Confidence                 2356788888888888888888877776311            1345677777 688889999999999887764


Q ss_pred             CCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHh
Q 009568          234 KPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI  313 (532)
Q Consensus       234 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl  313 (532)
                                ..++.|...+.+.++.|+..+++++..+..  +         ..+..+..+...........+..+++..
T Consensus       178 ----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~---------~A~~~l~~~~~~~g~~~~~~l~~~lal~  236 (410)
T TIGR02270       178 ----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--R---------LAWGVCRRFQVLEGGPHRQRLLVLLAVA  236 (410)
T ss_pred             ----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHhccCccHHHHHHHHHHhC
Confidence                      456667788888899999999998876643  2         2233444444444444443333344333


Q ss_pred             hcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHH
Q 009568          314 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAW  393 (532)
Q Consensus       314 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~  393 (532)
                        +.+         ..++.|..++.++   .++..++++++.+-.  +.         .++.|+..+...  .++..|..
T Consensus       237 --~~~---------~a~~~L~~ll~d~---~vr~~a~~AlG~lg~--p~---------av~~L~~~l~d~--~~aR~A~e  289 (410)
T TIGR02270       237 --GGP---------DAQAWLRELLQAA---ATRREALRAVGLVGD--VE---------AAPWCLEAMREP--PWARLAGE  289 (410)
T ss_pred             --Cch---------hHHHHHHHHhcCh---hhHHHHHHHHHHcCC--cc---------hHHHHHHHhcCc--HHHHHHHH
Confidence              111         5677888888865   389999999997743  33         567888877644  49999999


Q ss_pred             HHHHhhc
Q 009568          394 AISNATS  400 (532)
Q Consensus       394 aL~nl~~  400 (532)
                      ++..|+-
T Consensus       290 A~~~ItG  296 (410)
T TIGR02270       290 AFSLITG  296 (410)
T ss_pred             HHHHhhC
Confidence            9999875

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.55  E-value=7e-07  Score=86.29  Aligned_cols=282  Identities=16%  Similarity=0.239  Sum_probs=193.3

Q ss_pred             HhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 009568          112 EVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS  191 (532)
Q Consensus       112 ~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~  191 (532)
                      .+.+..+.+.|+++|+.++ ..+...+...++|....-+..+..+++.|+|..|+.++.+.+..++....|.+..+...+
T Consensus       426 gL~d~~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmync  504 (743)
T COG5369         426 GLLDYPIVELLIDALSNPE-IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNC  504 (743)
T ss_pred             hccccchHHHHHHHhcCcc-ceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcC
Confidence            3456778999999999887 677888888999988877788889999999999999999989999999999999997554


Q ss_pred             ch-hHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCC--CCcccc------cchHHHHHHhhcCCCHHHHH
Q 009568          192 PR-CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ--PPFDQV------RPALPALAQLVHSNDEEVLT  262 (532)
Q Consensus       192 ~~-~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~--~~~~~~------~~~l~~L~~lL~~~d~~v~~  262 (532)
                      .. .+-..+..-++..++.+. .++.-.++..++..|.|+..+...  ......      .-+...|+..++..+|-...
T Consensus       505 q~~ekf~~Lakig~~kvl~~~-NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~  583 (743)
T COG5369         505 QKNEKFKFLAKIGVEKVLSYT-NDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEIL  583 (743)
T ss_pred             cchhhhhhHHhcCHHHHHHHh-cCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhh
Confidence            33 233456666789999988 778889999999999999874311  111111      22556677777777777777


Q ss_pred             HHHHHHHHhccCChhHHHHHHH-hCchHHHHHhhC----C-------CCccchhhHHHHHHHhhcCCcchhHHHhhcCch
Q 009568          263 DACWALSYLSDGTNDKIQAVIE-AGVCPRLVELLG----H-------PSPSVLIPALRTVGNIVTGDDFQTQCIITYGAL  330 (532)
Q Consensus       263 ~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~lL~----~-------~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l  330 (532)
                      ..|..|.+++..++.....+.. ..++..+..+|.    .       ....+..+......++....+.....+.-.   
T Consensus       584 ~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~---  660 (743)
T COG5369         584 EGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTT---  660 (743)
T ss_pred             hhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecccccccccccceecC---
Confidence            7788888888666655444443 344444444431    1       123344555555556655444332222210   


Q ss_pred             HHHHHHhc--CCCchhHHHHHHHHHHHHhc---C------CHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009568          331 PYLLGLLT--HSHKKSIKKEACWTISNITA---G------NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNA  398 (532)
Q Consensus       331 ~~L~~lL~--~~~~~~v~~~a~~~L~nl~~---~------~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl  398 (532)
                      |.+=..=.  ...+.+.--+..|.+.|+.-   +      +.+.++.+.+.|+-+.|..+...+++.||..+-.||.++
T Consensus       661 p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l  739 (743)
T COG5369         661 PHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENL  739 (743)
T ss_pred             CCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence            11111111  11144577778888888653   2      226677777888888777777777889999999999887

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.55  E-value=3.7e-06  Score=80.11  Aligned_cols=265  Identities=14%  Similarity=0.089  Sum_probs=171.9

Q ss_pred             ccHHHHHhhhcCCChH--HHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009568           74 ESLPAMVAGVWSDDSS--LQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE  151 (532)
Q Consensus        74 ~~l~~lv~~L~s~~~~--~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~  151 (532)
                      +.+..|++++++++.+  ++.+|.+.|..++..   .+.+.+...| +..++.+-+....++++...+.+|.++-.++.+
T Consensus       180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a---eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee  255 (832)
T KOG3678|consen  180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILVA---ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE  255 (832)
T ss_pred             chHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh---hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence            5688899999998855  589999999999885   3455555544 444444444444479999999999999999999


Q ss_pred             hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhc
Q 009568          152 NTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF  230 (532)
Q Consensus       152 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L  230 (532)
                      ....++..|++..++-.....++.+..+|+.+|+|++.+. ...+..+++..+.+-|+.+- .+.|.-++..+|.+...|
T Consensus       256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA-~skDel~R~~AClAV~vl  334 (832)
T KOG3678|consen  256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA-FSKDELLRLHACLAVAVL  334 (832)
T ss_pred             HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh-cchHHHHHHHHHHHHhhh
Confidence            9999999999999999888888999999999999998554 34455666666666666655 566888899999999999


Q ss_pred             cCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHH
Q 009568          231 CRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV  310 (532)
Q Consensus       231 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L  310 (532)
                      +..+.........+.+..+-.++.+-|+.--..   --...+.+        ...+-++.|+.+|.+...+.+..+..-+
T Consensus       335 at~KE~E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG--------~~~d~LqRLvPlLdS~R~EAq~i~AF~l  403 (832)
T KOG3678|consen  335 ATNKEVEREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQG--------RGPDDLQRLVPLLDSNRLEAQCIGAFYL  403 (832)
T ss_pred             hhhhhhhHHHhhccchhhhhhhhhccCcchhhh---hhhhhhcc--------CChHHHHHhhhhhhcchhhhhhhHHHHH
Confidence            988744443334444444444554444432111   00001111        0113467788888865433332222222


Q ss_pred             HHhh--cCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHH
Q 009568          311 GNIV--TGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN  355 (532)
Q Consensus       311 ~nl~--~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n  355 (532)
                      +.=+  ..-....+.+-+-|.++.|-.+.+++ +..--+.|-.+|.-
T Consensus       404 ~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtv  449 (832)
T KOG3678|consen  404 CAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTV  449 (832)
T ss_pred             HHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHH
Confidence            1111  11112344555668889998888876 55433444444433

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.53  E-value=4.1e-05  Score=77.72  Aligned_cols=358  Identities=15%  Similarity=0.159  Sum_probs=228.6

Q ss_pred             cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (532)
Q Consensus        75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  154 (532)
                      .+|.+|+...+.+.+++...-..|-+.+..  .+.. .+.   -|..+-+-|.+++ +.+|..|+++|..|-.       
T Consensus        72 ~Fp~VVKNVaskn~EVKkLVyvYLlrYAEe--qpdL-ALL---SIntfQk~L~DpN-~LiRasALRvlSsIRv-------  137 (968)
T KOG1060|consen   72 LFPAVVKNVASKNIEVKKLVYVYLLRYAEE--QPDL-ALL---SINTFQKALKDPN-QLIRASALRVLSSIRV-------  137 (968)
T ss_pred             HHHHHHHHhhccCHHHHHHHHHHHHHHhhc--CCCc-eee---eHHHHHhhhcCCc-HHHHHHHHHHHHhcch-------
Confidence            578889988899988888877777777653  2222 122   3678888899888 8899888887766543       


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC
Q 009568          155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  234 (532)
Q Consensus       155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~  234 (532)
                      .++..=++-++-+...++.+-||..|+.++-.+-+-.+...+.+     +..+-.+| .+.++-+.-.|+.++-..|-+ 
T Consensus       138 p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL-----~e~I~~LL-aD~splVvgsAv~AF~evCPe-  210 (968)
T KOG1060|consen  138 PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQL-----EEVIKKLL-ADRSPLVVGSAVMAFEEVCPE-  210 (968)
T ss_pred             hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHH-----HHHHHHHh-cCCCCcchhHHHHHHHHhchh-
Confidence            11111112333345566889999999999999876666655543     23333344 777888999999999888854 


Q ss_pred             CCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccC---ChhHHHH----------------------HHHh---C
Q 009568          235 PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG---TNDKIQA----------------------VIEA---G  286 (532)
Q Consensus       235 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~---~~~~~~~----------------------~~~~---~  286 (532)
                         ....+.+-...+.++|.+-++.-+..++..|...+..   .+.....                      ..+.   -
T Consensus       211 ---rldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~l  287 (968)
T KOG1060|consen  211 ---RLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKL  287 (968)
T ss_pred             ---HHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHH
Confidence               3455566677777777766666666666666554421   1100000                      0000   1


Q ss_pred             chHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 009568          287 VCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQA  366 (532)
Q Consensus       287 ~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~  366 (532)
                      ++..+-.+|.+.++.+...++.+...++...+  .     ..+...|+.+|.+  +..++.-.+..+..++...+.... 
T Consensus       288 LL~stkpLl~S~n~sVVmA~aql~y~lAP~~~--~-----~~i~kaLvrLLrs--~~~vqyvvL~nIa~~s~~~~~lF~-  357 (968)
T KOG1060|consen  288 LLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ--V-----TKIAKALVRLLRS--NREVQYVVLQNIATISIKRPTLFE-  357 (968)
T ss_pred             HHHhccHHHhcCCcHHHHHHHhHHHhhCCHHH--H-----HHHHHHHHHHHhc--CCcchhhhHHHHHHHHhcchhhhh-
Confidence            23444456677888888889999888885332  1     2456788898876  456787777777777765555333 


Q ss_pred             HHHcCCHHHHHHHH-hcC-chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 009568          367 VIDAGLVGPLVNLL-QNA-EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV  444 (532)
Q Consensus       367 l~~~~~i~~L~~ll-~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~  444 (532)
                             |.+-.+. .+. ...++..-+..|.+++...+...        +++-|..+.++.|..+...++.+|......
T Consensus       358 -------P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~--------ILrE~q~YI~s~d~~faa~aV~AiGrCA~~  422 (968)
T KOG1060|consen  358 -------PHLKSFFVRSSDPTQVKILKLEILSNLANESNISE--------ILRELQTYIKSSDRSFAAAAVKAIGRCASR  422 (968)
T ss_pred             -------hhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHH--------HHHHHHHHHhcCchhHHHHHHHHHHHHHHh
Confidence                   2333332 223 34566667788888887544322        566778888888888888888887776543


Q ss_pred             hhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009568          445 GEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLE  499 (532)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~  499 (532)
                      .....                  ...+.-|..|..++++-|-..|...|.++...
T Consensus       423 ~~sv~------------------~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~  459 (968)
T KOG1060|consen  423 IGSVT------------------DTCLNGLVQLLSSHDELVVAEAVVVIKRLLQK  459 (968)
T ss_pred             hCchh------------------hHHHHHHHHHHhcccchhHHHHHHHHHHHHhh
Confidence            32211                  22345566666666777777777777777654

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=2.7e-05  Score=81.10  Aligned_cols=303  Identities=14%  Similarity=0.207  Sum_probs=200.5

Q ss_pred             hccHHHHHhhhc-CCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009568           73 LESLPAMVAGVW-SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE  151 (532)
Q Consensus        73 ~~~l~~lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~  151 (532)
                      ++.++-+...|. ..++.++..|+..+..+.+.  .+....+...|++..|+.+|.+.  |..+..++.+|..+++ +++
T Consensus      1770 ig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan--~~Cv~~~a~~~vL~~LL~lLHS~--PS~R~~vL~vLYAL~S-~~~ 1844 (2235)
T KOG1789|consen 1770 IGNFPLLITYLRCRKHPKLQILALQVILLATAN--KECVTDLATCNVLTTLLTLLHSQ--PSMRARVLDVLYALSS-NGQ 1844 (2235)
T ss_pred             hcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc--cHHHHHHHhhhHHHHHHHHHhcC--hHHHHHHHHHHHHHhc-CcH
Confidence            455666676666 46788999999999888765  57788899999999999999875  6889999999999999 788


Q ss_pred             hHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC---chhHHHHHh----------cCChHHHHHHhhh-hhh
Q 009568          152 NTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDS---PRCRDLVLS----------QGALIPLLAQLNE-RAK  216 (532)
Q Consensus       152 ~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~---~~~~~~~~~----------~~~l~~L~~ll~~-~~~  216 (532)
                      ......+.|++..+..++.. .++..|.+++..++.+..+.   |..+-.++.          .+.-+..+..+.. +++
T Consensus      1845 i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~En 1924 (2235)
T KOG1789|consen 1845 IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSEN 1924 (2235)
T ss_pred             HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCC
Confidence            88888889999888887655 67899999999999997643   332222111          0011333333321 112


Q ss_pred             hH------HHHHHHHHhhhcc----CCC---CCC--------------------------------------Ccccccch
Q 009568          217 LS------MLRNATWTLSNFC----RGK---PQP--------------------------------------PFDQVRPA  245 (532)
Q Consensus       217 ~~------~~~~a~~~L~~L~----~~~---~~~--------------------------------------~~~~~~~~  245 (532)
                      ++      .+......+..+.    +..   |..                                      +.....++
T Consensus      1925 PELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~L 2004 (2235)
T KOG1789|consen 1925 PELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTEL 2004 (2235)
T ss_pred             cccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHH
Confidence            21      2222222222221    111   000                                      00111333


Q ss_pred             HHHHHHhhcCCCH--HHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHH
Q 009568          246 LPALAQLVHSNDE--EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQC  323 (532)
Q Consensus       246 l~~L~~lL~~~d~--~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~  323 (532)
                      +..+..++..+++  ........++..+....+...+.+-..|.+|.++..+...+..+-..|++.|-.++.. .-+.+.
T Consensus      2005 Lek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen-~~C~~A 2083 (2235)
T KOG1789|consen 2005 LEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSEN-QFCCDA 2083 (2235)
T ss_pred             HHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhc-cHHHHH
Confidence            4444455543332  2233333344444445555555566669999999999988888889999999999874 346667


Q ss_pred             HhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHHhcC
Q 009568          324 IITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQAVIDAGLVGPLVNLLQNA  383 (532)
Q Consensus       324 ~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~  383 (532)
                      +.....+..+++.++..  +...--||.+|..+.. ...+.+...++.|++|.|+.+|+..
T Consensus      2084 MA~l~~i~~~m~~mkK~--~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2084 MAQLPCIDGIMKSMKKQ--PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred             HhccccchhhHHHHHhc--chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence            76667777788888754  3445588888888876 4456667777899999999999864

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.50  E-value=4.3e-05  Score=69.36  Aligned_cols=278  Identities=16%  Similarity=0.164  Sum_probs=165.8

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHH--hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q 009568          119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVI--DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD  196 (532)
Q Consensus       119 i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~--~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~  196 (532)
                      +..++.++.+.+ |.++..|...+..++..   ..+.+.  +...++.+.+++....+  .+.|+.+|.|++.+. ..|.
T Consensus         5 l~elv~ll~~~s-P~v~~~AV~~l~~lt~~---~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~-~l~~   77 (353)
T KOG2973|consen    5 LVELVELLHSLS-PPVRKAAVEHLLGLTGR---GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKE-ELRK   77 (353)
T ss_pred             HHHHHHHhccCC-hHHHHHHHHHHhhcccc---chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhH-HHHH
Confidence            456789999998 99999999999988874   111121  22457788888877555  788999999997654 4667


Q ss_pred             HHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh
Q 009568          197 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN  276 (532)
Q Consensus       197 ~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~  276 (532)
                      .+++. .+..++..+ .++........|..|+||++..         +.+..+...+..+                  .+
T Consensus        78 ~ll~~-~~k~l~~~~-~~p~~~lad~~cmlL~NLs~~~---------~~~~~ll~~~~~~------------------~~  128 (353)
T KOG2973|consen   78 KLLQD-LLKVLMDML-TDPQSPLADLICMLLSNLSRDD---------DEVAALLTNLTEK------------------KD  128 (353)
T ss_pred             HHHHH-HHHHHHHHh-cCcccchHHHHHHHHHHhccCc---------hHHHHHHHhcccc------------------cc
Confidence            76665 566666666 4444567778888999999874         1122222111100                  00


Q ss_pred             hHHHHHHHhCchHHHHHhhCCCC--ccchhhHHHHHHHhhcCCcchhHHHhhcCchH-HHHHHhcCCCchhHHH-HHHHH
Q 009568          277 DKIQAVIEAGVCPRLVELLGHPS--PSVLIPALRTVGNIVTGDDFQTQCIITYGALP-YLLGLLTHSHKKSIKK-EACWT  352 (532)
Q Consensus       277 ~~~~~~~~~~~l~~L~~lL~~~~--~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~-~L~~lL~~~~~~~v~~-~a~~~  352 (532)
                              .+++.....+.+++-  ..-......+++||+.... .+..+.+...++ ..+..+.+. +..+|+ ..+.+
T Consensus       129 --------~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~~~~-gR~l~~~~k~~p~~kll~ft~~-~s~vRr~Gvagt  198 (353)
T KOG2973|consen  129 --------SGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQFEA-GRKLLLEPKRFPDQKLLPFTSE-DSQVRRGGVAGT  198 (353)
T ss_pred             --------cchHHHHHHHhCcccccccchhHHHHHHHHHhhhhh-hhhHhcchhhhhHhhhhccccc-chhhhccchHHH
Confidence                    122222222222211  1112233455666665433 444444443221 122223333 555655 45677


Q ss_pred             HHHHhcCCHHHHHHHH-HcCCHHHHH---------------------HHHh-----cCchhHHHHHHHHHHHhhcCCCHH
Q 009568          353 ISNITAGNRDQIQAVI-DAGLVGPLV---------------------NLLQ-----NAEFDIKKEAAWAISNATSGGTHE  405 (532)
Q Consensus       353 L~nl~~~~~~~~~~l~-~~~~i~~L~---------------------~ll~-----~~~~~v~~~a~~aL~nl~~~~~~~  405 (532)
                      |.|+|.....+-..+- ..+++|.++                     +++.     .+++.+|+..+.+|.-++.  +..
T Consensus       199 lkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca--T~~  276 (353)
T KOG2973|consen  199 LKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA--TRA  276 (353)
T ss_pred             HHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh--hhH
Confidence            8887765433322111 112222222                     3333     2378899999999999988  668


Q ss_pred             HHHHHHHcCChHHHHhhcCC-CCHHHHHHHHHHHHHHHHh
Q 009568          406 QIKYLVREGCIKPLCDLFVC-PDPRIVTVCLEGLENILKV  444 (532)
Q Consensus       406 ~~~~l~~~~~l~~L~~lL~~-~d~~v~~~al~~L~~l~~~  444 (532)
                      .++++.+.|+.+.+-.+-+. +|++++..+......+++.
T Consensus       277 GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~~  316 (353)
T KOG2973|consen  277 GREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVRL  316 (353)
T ss_pred             hHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHhc
Confidence            88999999999988887764 6788888777766666654

>TIGR02270 conserved hypothetical protein

Probab=98.47  E-value=5.4e-05  Score=74.64  Aligned_cols=242  Identities=19%  Similarity=0.046  Sum_probs=170.1

Q ss_pred             cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q 009568          118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL  197 (532)
Q Consensus       118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~  197 (532)
                      .++.++..|.....+++...+++++.....  +         .++..|+..|.+.++.++..++.+|+.+-.  +     
T Consensus        55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~--~-----  116 (410)
T TIGR02270        55 ATELLVSALAEADEPGRVACAALALLAQED--A---------LDLRSVLAVLQAGPEGLCAGIQAALGWLGG--R-----  116 (410)
T ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHhccCC--h---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCc--h-----
Confidence            688889999544337887776666542221  1         137899999999999999999999997621  1     


Q ss_pred             HHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChh
Q 009568          198 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTND  277 (532)
Q Consensus       198 ~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~  277 (532)
                          .....|+.++ .+.++.++..++.++....           ....+.+..+|++.++.++..++.+++.+...   
T Consensus       117 ----~a~~~L~~~L-~~~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~---  177 (410)
T TIGR02270       117 ----QAEPWLEPLL-AASEPPGRAIGLAALGAHR-----------HDPGPALEAALTHEDALVRAAALRALGELPRR---  177 (410)
T ss_pred             ----HHHHHHHHHh-cCCChHHHHHHHHHHHhhc-----------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc---
Confidence                2366788888 7778888888887776622           12356888899999999999999999987632   


Q ss_pred             HHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHh
Q 009568          278 KIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT  357 (532)
Q Consensus       278 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~  357 (532)
                              ..++.|...+.+.++.|+..|+..++.+-.  +         ..+..+....... .......+..++... 
T Consensus       178 --------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~---------~A~~~l~~~~~~~-g~~~~~~l~~~lal~-  236 (410)
T TIGR02270       178 --------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--R---------LAWGVCRRFQVLE-GGPHRQRLLVLLAVA-  236 (410)
T ss_pred             --------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHhcc-CccHHHHHHHHHHhC-
Confidence                    456677888999999999999999976643  2         2234555544444 333444443344333 


Q ss_pred             cCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHH
Q 009568          358 AGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEG  437 (532)
Q Consensus       358 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~  437 (532)
                       +.+         ..++.|..+++.+.  ++..++++++.+-..            ..++.|+..++++  .+...+-++
T Consensus       237 -~~~---------~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p------------~av~~L~~~l~d~--~~aR~A~eA  290 (410)
T TIGR02270       237 -GGP---------DAQAWLRELLQAAA--TRREALRAVGLVGDV------------EAAPWCLEAMREP--PWARLAGEA  290 (410)
T ss_pred             -Cch---------hHHHHHHHHhcChh--hHHHHHHHHHHcCCc------------chHHHHHHHhcCc--HHHHHHHHH
Confidence             333         25677888887644  999999999977442            2577777777643  488999999


Q ss_pred             HHHHHH
Q 009568          438 LENILK  443 (532)
Q Consensus       438 L~~l~~  443 (532)
                      +..|.-
T Consensus       291 ~~~ItG  296 (410)
T TIGR02270       291 FSLITG  296 (410)
T ss_pred             HHHhhC
Confidence            998864

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.45  E-value=0.00014  Score=66.25  Aligned_cols=272  Identities=14%  Similarity=0.124  Sum_probs=176.6

Q ss_pred             HHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHH
Q 009568          205 IPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIE  284 (532)
Q Consensus       205 ~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~  284 (532)
                      ..++.++ .+.++.++..|+.-+..++......-.......++.+.+++...++  ...|..++.|++.... ..+.+++
T Consensus         6 ~elv~ll-~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~-l~~~ll~   81 (353)
T KOG2973|consen    6 VELVELL-HSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEE-LRKKLLQ   81 (353)
T ss_pred             HHHHHHh-ccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHH-HHHHHHH
Confidence            4566777 7888999999999998888772222222235577788888887777  7788899999986643 3355555


Q ss_pred             hCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHh--h----cCchHHHHHHhcCCCchh-HHHHHHHHHHHHh
Q 009568          285 AGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCII--T----YGALPYLLGLLTHSHKKS-IKKEACWTISNIT  357 (532)
Q Consensus       285 ~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~--~----~~~l~~L~~lL~~~~~~~-v~~~a~~~L~nl~  357 (532)
                      . ++..++..+.++.+.+...++..++|++...+.....+.  .    .|++........++.+.. --...+.+++|++
T Consensus        82 ~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls  160 (353)
T KOG2973|consen   82 D-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLS  160 (353)
T ss_pred             H-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHh
Confidence            5 888899999999888999999999999986664332222  1    455555555555543321 2235567778887


Q ss_pred             cCCHHHHHHHHHcCC--HHHHHHHHhcCchhHH-HHHHHHHHHhhcCCCH---------HHHHHHHH-------------
Q 009568          358 AGNRDQIQAVIDAGL--VGPLVNLLQNAEFDIK-KEAAWAISNATSGGTH---------EQIKYLVR-------------  412 (532)
Q Consensus       358 ~~~~~~~~~l~~~~~--i~~L~~ll~~~~~~v~-~~a~~aL~nl~~~~~~---------~~~~~l~~-------------  412 (532)
                      .. +.....+.+...  ...+..+-. .+..+| ...+..|.|++.....         ....+++-             
T Consensus       161 ~~-~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm  238 (353)
T KOG2973|consen  161 QF-EAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDM  238 (353)
T ss_pred             hh-hhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHH
Confidence            64 333445554332  233333333 445555 4556778887764311         11111110             


Q ss_pred             cCChHHHHhhcC-----CCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHH-hcCCCHHHH
Q 009568          413 EGCIKPLCDLFV-----CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENL-QSHDNNEIY  486 (532)
Q Consensus       413 ~~~l~~L~~lL~-----~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L-~~~~~~~v~  486 (532)
                      .+...-| ++|.     .+|+.++...+++|..++.              ...-++.+..-|+...+..+ ...+++++.
T Consensus       239 ~~LP~eL-QyLp~dKeRepdpdIrk~llEai~lLca--------------T~~GRe~lR~kgvYpilRElhk~e~ded~~  303 (353)
T KOG2973|consen  239 AKLPVEL-QYLPEDKEREPDPDIRKMLLEALLLLCA--------------TRAGREVLRSKGVYPILRELHKWEEDEDIR  303 (353)
T ss_pred             hcCCHhh-hcCCccccCCCChHHHHHHHHHHHHHHh--------------hhHhHHHHHhcCchHHHHHHhcCCCcHHHH
Confidence            0112222 4443     3678999999999988864              22347888999999999998 567899999


Q ss_pred             HHHHHHHHHhCC
Q 009568          487 EKAVKILETYWL  498 (532)
Q Consensus       487 ~~a~~il~~~~~  498 (532)
                      ..+..+++-...
T Consensus       304 ~ace~vvq~Lv~  315 (353)
T KOG2973|consen  304 EACEQVVQMLVR  315 (353)
T ss_pred             HHHHHHHHHHHh
Confidence            999988876665

>PF05536 Neurochondrin: Neurochondrin

Probab=98.42  E-value=0.00057  Score=70.39  Aligned_cols=380  Identities=16%  Similarity=0.142  Sum_probs=226.3

Q ss_pred             cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCc--hhHhhhCCcHHHHHHhhcCCC------CHHHHHHHHHHHHHHh
Q 009568           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPP--IEEVIQSGVVPRFVEFLMRED------YPQLQFEAAWALTNIA  146 (532)
Q Consensus        75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~--~~~~i~~g~i~~Lv~lL~~~~------~~~~~~~a~~~L~~l~  146 (532)
                      .+...+..|++.+.+.++.|+-.+.+++...+...  .+.+.+.=+.+.+-++|.++.      ....+.-|+.+|..++
T Consensus         6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~   85 (543)
T PF05536_consen    6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC   85 (543)
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            56888999999888889999999999998642211  233556656677778887622      1567888889999998


Q ss_pred             cCChhhH--HHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHH
Q 009568          147 SGTSENT--KVVIDHGAVPIFVKLLASPSD-DVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNA  223 (532)
Q Consensus       147 ~~~~~~~--~~i~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a  223 (532)
                      . .++..  ..++  +-||.|+..+.+.+. .+...|..+|..++. .+.-+..+++.|.++.|+..+.+  .+.....+
T Consensus        86 ~-~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~A  159 (543)
T PF05536_consen   86 R-DPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEIIPN--QSFQMEIA  159 (543)
T ss_pred             C-ChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHHHh--CcchHHHH
Confidence            8 55443  2333  578999999988666 999999999999995 45567888899999999999844  55566777


Q ss_pred             HHHhhhccCCCCC----CCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhH-HHHH----HHhCchHHHHHh
Q 009568          224 TWTLSNFCRGKPQ----PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDK-IQAV----IEAGVCPRLVEL  294 (532)
Q Consensus       224 ~~~L~~L~~~~~~----~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~-~~~~----~~~~~l~~L~~l  294 (532)
                      +.+|.+++.....    ........+++.+...+.......+-.+|..|..+....+.. ....    .-..+...+..+
T Consensus       160 l~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~i  239 (543)
T PF05536_consen  160 LNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDI  239 (543)
T ss_pred             HHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHH
Confidence            7777777665321    112223456666777777666777778888888877554211 0111    112344445555


Q ss_pred             hCC-CCccchhhHHHHHHHhhcCCc-------------chhHHHhhcC------chHHHHHHhcCCCchhHH--HHHHH-
Q 009568          295 LGH-PSPSVLIPALRTVGNIVTGDD-------------FQTQCIITYG------ALPYLLGLLTHSHKKSIK--KEACW-  351 (532)
Q Consensus       295 L~~-~~~~v~~~al~~L~nl~~~~~-------------~~~~~~~~~~------~l~~L~~lL~~~~~~~v~--~~a~~-  351 (532)
                      |++ ..+.-|.+++...+.+.....             ...-.+++.-      .++.|....+.+......  -.+|+ 
T Consensus       240 L~sr~~~~~R~~al~Laa~Ll~~~G~~wl~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~~~L~~cf~  319 (543)
T PF05536_consen  240 LQSRLTPSQRDPALNLAASLLDLLGPEWLFADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPEKQRLLASCFS  319 (543)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHhChHhhcCCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHHHHHHHHHHHH
Confidence            655 356667777777777764311             0111111100      011111111111011111  11222 


Q ss_pred             H----HHHHhc--------CCHHHHHHHHH--cCCHHHHHHHHhcC------chhHHHHHHHHHHHhhcCCCHHHHHHHH
Q 009568          352 T----ISNITA--------GNRDQIQAVID--AGLVGPLVNLLQNA------EFDIKKEAAWAISNATSGGTHEQIKYLV  411 (532)
Q Consensus       352 ~----L~nl~~--------~~~~~~~~l~~--~~~i~~L~~ll~~~------~~~v~~~a~~aL~nl~~~~~~~~~~~l~  411 (532)
                      +    ++.++.        -.++....+..  .+.+...+.+|..-      ++.....+.++|+....-.+....+.+ 
T Consensus       320 ilE~~I~~l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaEe~~~lr~~v-  398 (543)
T PF05536_consen  320 ILEHFIGYLVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAEETSALRKEV-  398 (543)
T ss_pred             HHHHHHHHHHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhChHHHHHHH-
Confidence            1    222222        12344444432  23455566666542      333666788888888775454444443 


Q ss_pred             HcCChHHHHhhcCCCCH----------HHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHH
Q 009568          412 REGCIKPLCDLFVCPDP----------RIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIEN  476 (532)
Q Consensus       412 ~~~~l~~L~~lL~~~d~----------~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~  476 (532)
                       .++++.++.+......          +.+...+=+|..+..              ....+..+...||...+-+
T Consensus       399 -~~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~--------------e~~gr~~l~~~~g~~~l~~  458 (543)
T PF05536_consen  399 -YGLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTA--------------EEEGRKILLSNGGWKLLCD  458 (543)
T ss_pred             -HHHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhc--------------cHHHHHHHHhCCcHHHHHH
Confidence             3688999988874322          355555666666653              2234666666777666554

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.41  E-value=0.00015  Score=73.42  Aligned_cols=149  Identities=12%  Similarity=0.107  Sum_probs=95.1

Q ss_pred             CchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHH
Q 009568          328 GALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQ  406 (532)
Q Consensus       328 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~  406 (532)
                      |++--++.+|.++ +-++|+.+....-.++. .+.+.+-.+++..+...--. =..++.+.|+....++..++..- ++.
T Consensus       317 ~l~mDvLrvLss~-dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d~~~~yRqlLiktih~cav~F-p~~  393 (948)
T KOG1058|consen  317 GLIMDVLRVLSSP-DLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESDDNGKYRQLLIKTIHACAVKF-PEV  393 (948)
T ss_pred             HHHHHHHHHcCcc-cccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHHHHHhhcC-hHH
Confidence            3444566777777 88899888887777765 44444433333222111110 01123467888888888887753 343


Q ss_pred             HHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHH
Q 009568          407 IKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIY  486 (532)
Q Consensus       407 ~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~  486 (532)
                      ..     .+++.|++.+.+.++.....++..+...++..++..            ...++     ..++.+-.-.+..++
T Consensus       394 aa-----tvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr------------~~ii~-----~l~~~~~~irS~ki~  451 (948)
T KOG1058|consen  394 AA-----TVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLR------------ASIIE-----KLLETFPQIRSSKIC  451 (948)
T ss_pred             HH-----HHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHH------------HHHHH-----HHHHhhhhhcccccc
Confidence            33     478999999999999888888888888877655432            22222     233444444566788


Q ss_pred             HHHHHHHHHhCCCCc
Q 009568          487 EKAVKILETYWLEED  501 (532)
Q Consensus       487 ~~a~~il~~~~~~~~  501 (532)
                      .-|.||+..|...+.
T Consensus       452 rgalwi~GeYce~~~  466 (948)
T KOG1058|consen  452 RGALWILGEYCEGLS  466 (948)
T ss_pred             hhHHHHHHHHHhhhH
Confidence            899999999988766

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.37  E-value=0.00018  Score=70.32  Aligned_cols=250  Identities=28%  Similarity=0.312  Sum_probs=172.8

Q ss_pred             cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (532)
Q Consensus        75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  154 (532)
                      .++.+++.+.+.++.++..|+..+..+-...            .+|.+..++.+.+ +.+|..|+.+|+.+-.  +    
T Consensus        44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~~------------av~~l~~~l~d~~-~~vr~~a~~aLg~~~~--~----  104 (335)
T COG1413          44 AADELLKLLEDEDLLVRLSAAVALGELGSEE------------AVPLLRELLSDED-PRVRDAAADALGELGD--P----  104 (335)
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHhhhchHH------------HHHHHHHHhcCCC-HHHHHHHHHHHHccCC--h----
Confidence            5788999999999999999999977765432            7999999999998 8999999998887764  2    


Q ss_pred             HHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhh-----------hhHHHHH
Q 009568          155 VVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA-----------KLSMLRN  222 (532)
Q Consensus       155 ~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~-----------~~~~~~~  222 (532)
                           ..++.|+.++. +++..+|..+.++|+.+-...           .+.+++..+.+..           ...++..
T Consensus       105 -----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~  168 (335)
T COG1413         105 -----EAVPPLVELLENDENEGVRAAAARALGKLGDER-----------ALDPLLEALQDEDSGSAAAALDAALLDVRAA  168 (335)
T ss_pred             -----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-----------hhHHHHHHhccchhhhhhhhccchHHHHHHH
Confidence                 35788999888 589999999999999983211           2666777763322           1134555


Q ss_pred             HHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccc
Q 009568          223 ATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSV  302 (532)
Q Consensus       223 a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v  302 (532)
                      +...+..+-..          ..++.+...+...+..++..+..+++.+....         ..+.+.+...+.++++.+
T Consensus       169 a~~~l~~~~~~----------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~v  229 (335)
T COG1413         169 AAEALGELGDP----------EAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEV  229 (335)
T ss_pred             HHHHHHHcCCh----------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHH
Confidence            55555554432          45667778888888888888888888776543         245567777788888888


Q ss_pred             hhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc
Q 009568          303 LIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN  382 (532)
Q Consensus       303 ~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~  382 (532)
                      +..++..++.+-..           ...+.+...+... +..++..+...+..+  +..         .....+...+.+
T Consensus       230 r~~~~~~l~~~~~~-----------~~~~~l~~~l~~~-~~~~~~~~~~~~~~~--~~~---------~~~~~l~~~~~~  286 (335)
T COG1413         230 RKAALLALGEIGDE-----------EAVDALAKALEDE-DVILALLAAAALGAL--DLA---------EAALPLLLLLID  286 (335)
T ss_pred             HHHHHHHhcccCcc-----------hhHHHHHHHHhcc-chHHHHHHHHHhccc--Cch---------hhHHHHHHHhhc
Confidence            88888888765532           2345667777666 555555554444411  111         123445555666


Q ss_pred             CchhHHHHHHHHHHHhhcC
Q 009568          383 AEFDIKKEAAWAISNATSG  401 (532)
Q Consensus       383 ~~~~v~~~a~~aL~nl~~~  401 (532)
                      ....++..+..++..+...
T Consensus       287 ~~~~~~~~~~~~l~~~~~~  305 (335)
T COG1413         287 EANAVRLEAALALGQIGQE  305 (335)
T ss_pred             chhhHHHHHHHHHHhhccc
Confidence            6677777777777766553

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.34  E-value=2.5e-05  Score=77.72  Aligned_cols=221  Identities=14%  Similarity=0.128  Sum_probs=149.1

Q ss_pred             HHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCC-----hhHHHH
Q 009568          207 LLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT-----NDKIQA  281 (532)
Q Consensus       207 L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~-----~~~~~~  281 (532)
                      +..+. .+.+..++..|+..|..|..+.     ...+.+....++++.+++..|+..|+..++......     .+.-..
T Consensus       203 l~~~~-~~~D~~Vrt~A~eglL~L~eg~-----kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~  276 (823)
T KOG2259|consen  203 LIYLE-HDQDFRVRTHAVEGLLALSEGF-----KLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE  276 (823)
T ss_pred             HHHHh-cCCCcchHHHHHHHHHhhcccc-----cccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence            55555 6778888888888888887642     223455667788899999999998866665444222     111111


Q ss_pred             HHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHH--hcC
Q 009568          282 VIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNI--TAG  359 (532)
Q Consensus       282 ~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl--~~~  359 (532)
                      -....++..+...+.+.+..++..|..+||.+-.-+++.....++..++..+-..=...      +......++-  ++|
T Consensus       277 kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ah------krpk~l~s~GewSsG  350 (823)
T KOG2259|consen  277 KLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAH------KRPKALYSSGEWSSG  350 (823)
T ss_pred             hhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcc------cchHHHHhcCCcccC
Confidence            22236788899999999999999999999999877666555555544333222111100      1111111111  111


Q ss_pred             -----------CHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCH
Q 009568          360 -----------NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDP  428 (532)
Q Consensus       360 -----------~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~  428 (532)
                                 ..+.-..++..|..-.++.-+.+.-.+||..|+.+++.++... +.+...     .++.|++++.++..
T Consensus       351 k~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss-P~FA~~-----aldfLvDMfNDE~~  424 (823)
T KOG2259|consen  351 KEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS-PGFAVR-----ALDFLVDMFNDEIE  424 (823)
T ss_pred             ccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC-CCcHHH-----HHHHHHHHhccHHH
Confidence                       1122335677788888888888888899999999999998863 333333     68899999999999


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 009568          429 RIVTVCLEGLENILKVG  445 (532)
Q Consensus       429 ~v~~~al~~L~~l~~~~  445 (532)
                      .|+..++.+|..|....
T Consensus       425 ~VRL~ai~aL~~Is~~l  441 (823)
T KOG2259|consen  425 VVRLKAIFALTMISVHL  441 (823)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999887653

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=0.00011  Score=67.27  Aligned_cols=263  Identities=14%  Similarity=0.174  Sum_probs=181.6

Q ss_pred             HHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh----hHHHHHHHhCchHHHHHhhCCC
Q 009568          223 ATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN----DKIQAVIEAGVCPRLVELLGHP  298 (532)
Q Consensus       223 a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~----~~~~~~~~~~~l~~L~~lL~~~  298 (532)
                      ++.+|-.|.....  ......+..|.|-.-|..+|..|...+|..++.+...++    ..+..+++.++++.++.++...
T Consensus        63 cVscLERLfkake--gahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgge  140 (524)
T KOG4413|consen   63 CVSCLERLFKAKE--GAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGE  140 (524)
T ss_pred             HHHHHHHHHhhcc--chhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCC
Confidence            4444544444321  122234566777777788899999999999999987665    2344566889999999999999


Q ss_pred             CccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHH--HHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHH
Q 009568          299 SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLL--GLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL  376 (532)
Q Consensus       299 ~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~--~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L  376 (532)
                      +.++...|...+..++...+ ....++++..+..+.  ++-... +.-+|......+..+.+-+++.....-..|++..|
T Consensus       141 ddeVAkAAiesikrialfpa-aleaiFeSellDdlhlrnlaakc-ndiaRvRVleLIieifSiSpesaneckkSGLldlL  218 (524)
T KOG4413|consen  141 DDEVAKAAIESIKRIALFPA-ALEAIFESELLDDLHLRNLAAKC-NDIARVRVLELIIEIFSISPESANECKKSGLLDLL  218 (524)
T ss_pred             cHHHHHHHHHHHHHHHhcHH-HHHHhcccccCChHHHhHHHhhh-hhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHH
Confidence            99999999999999998654 556677777665543  333333 56678888888888888888888888889999999


Q ss_pred             HHHHhc-CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCC--CCHHHHHHHHHHHHHHHHhhhhhhhccC
Q 009568          377 VNLLQN-AEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC--PDPRIVTVCLEGLENILKVGEAEKNMGT  453 (532)
Q Consensus       377 ~~ll~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~--~d~~v~~~al~~L~~l~~~~~~~~~~~~  453 (532)
                      ..-|.. .|.-|+..+......++.  .....+++.+.|+++.++.++..  .||--...++-....++....-...   
T Consensus       219 eaElkGteDtLVianciElvteLae--teHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdv---  293 (524)
T KOG4413|consen  219 EAELKGTEDTLVIANCIELVTELAE--TEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDV---  293 (524)
T ss_pred             HHHhcCCcceeehhhHHHHHHHHHH--HhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhc---
Confidence            888877 477788888888888877  44567778899999999999974  4554444456666555543222211   


Q ss_pred             CCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009568          454 ATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLE  499 (532)
Q Consensus       454 ~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~  499 (532)
                         .+...++.+.  -.++..-++.+..+++....|.+.+..+=+.
T Consensus       294 ---seeaiceali--iaidgsfEmiEmnDpdaieaAiDalGilGSn  334 (524)
T KOG4413|consen  294 ---SEEAICEALI--IAIDGSFEMIEMNDPDAIEAAIDALGILGSN  334 (524)
T ss_pred             ---CHHHHHHHHH--HHHHhhHHhhhcCCchHHHHHHHHHHhccCC
Confidence               0111222211  1234444455677888888888887765443

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.32  E-value=0.0002  Score=69.78  Aligned_cols=317  Identities=17%  Similarity=0.094  Sum_probs=194.2

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhh-hhHHHHHHHHHhhhccCCCCCCCcc
Q 009568          162 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA-KLSMLRNATWTLSNFCRGKPQPPFD  240 (532)
Q Consensus       162 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~~~~~a~~~L~~L~~~~~~~~~~  240 (532)
                      .+.+..++-+++.+++..+.+++..+..+.... ..+.+.++-..++..|..+. +..=+.+|+..+..+...+. ....
T Consensus        27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l-~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~-~~~~  104 (371)
T PF14664_consen   27 GERIQCMLLSDSKEVRAAGYRILRYLISDEESL-QILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK-GPKE  104 (371)
T ss_pred             HHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHH-HHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC-Cccc
Confidence            344444444445999999999999988776543 45556665555666664332 33446678777777776632 2223


Q ss_pred             cccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcch
Q 009568          241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ  320 (532)
Q Consensus       241 ~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~  320 (532)
                      .-.+++..++.+..+.++..+..++.+++.++-.++   +.+..+|++..|...+.++...+....+.++-.+...+. .
T Consensus       105 ~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~-t  180 (371)
T PF14664_consen  105 IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPR-T  180 (371)
T ss_pred             CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcc-h
Confidence            457888999999999999999999999999998777   457789999999999988666677788888888886443 4


Q ss_pred             hHHHhhcCchHHHHHHhcCCC------ch--hHHHHHHHHHHHHhcCCHHHHHHHHHc-CCHHHHHHHHhcCchhHHHHH
Q 009568          321 TQCIITYGALPYLLGLLTHSH------KK--SIKKEACWTISNITAGNRDQIQAVIDA-GLVGPLVNLLQNAEFDIKKEA  391 (532)
Q Consensus       321 ~~~~~~~~~l~~L~~lL~~~~------~~--~v~~~a~~~L~nl~~~~~~~~~~l~~~-~~i~~L~~ll~~~~~~v~~~a  391 (532)
                      ++++...--++.+..-+.+..      +.  +.-..+..++..+...=+..+....+. ..+..|+..|..+.+++|+..
T Consensus       181 R~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~I  260 (371)
T PF14664_consen  181 RKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAI  260 (371)
T ss_pred             hhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHH
Confidence            444544344556655554330      22  233445555655554322211111111 367889999999999999999


Q ss_pred             HHHHHHhhcCCCHHHHHHHHH------cCCh---HHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHH
Q 009568          392 AWAISNATSGGTHEQIKYLVR------EGCI---KPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYA  462 (532)
Q Consensus       392 ~~aL~nl~~~~~~~~~~~l~~------~~~l---~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~  462 (532)
                      ...+..+..-..+.....+..      .|-.   ..+..-........-... ..-.+++..            ...-..
T Consensus       261 ldll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~-~~~~~l~~~------------y~aLll  327 (371)
T PF14664_consen  261 LDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRS-SKRPNLVNH------------YLALLL  327 (371)
T ss_pred             HHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccc-cccccHHHH------------HHHHHH
Confidence            999998876543322211111      1111   000000000000000000 000011100            111134


Q ss_pred             HHHHHhccHHHHHHHhcCC-CHHHHHHHHHHHHHhC
Q 009568          463 QLVEEAEGLEKIENLQSHD-NNEIYEKAVKILETYW  497 (532)
Q Consensus       463 ~~~~~~g~~~~l~~L~~~~-~~~v~~~a~~il~~~~  497 (532)
                      ..+.++|.++.|-.+..+. ++.+..+|.-+|.+++
T Consensus       328 ~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL  363 (371)
T PF14664_consen  328 AILIEAGLLEALVELIESSEDSSLSRKATLLLGELL  363 (371)
T ss_pred             HHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence            5577899999999997766 8999999999988775

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=98.32  E-value=0.00013  Score=76.58  Aligned_cols=387  Identities=13%  Similarity=0.086  Sum_probs=256.1

Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 009568           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV  155 (532)
Q Consensus        76 l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  155 (532)
                      .+..-+.-+..++.++..++..+.++++..    .......+++|.+.++..++. ..++..|...+.++...-....  
T Consensus       239 r~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~----~~~~~~s~v~~~~~~L~~Ddq-dsVr~~a~~~~~~l~~l~~~~~--  311 (759)
T KOG0211|consen  239 RPIVQSLCQDDTPMVRRAVASNLGNIAKVL----ESEIVKSEVLPTLIQLLRDDQ-DSVREAAVESLVSLLDLLDDDD--  311 (759)
T ss_pred             HHHHHhhccccchhhHHHHHhhhHHHHHHH----HHHHHHhhccHHHhhhhhcch-hhHHHHHHHHHHHHHHhcCCch--
Confidence            344444555667888888888888887642    225667889999999999887 7899999988888875211110  


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCC
Q 009568          156 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP  235 (532)
Q Consensus       156 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~  235 (532)
                      =+...+.+.+++...+++..++.........+...-..   .......+++...++ .....+.+..+..-...++...+
T Consensus       312 d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~---~~~~~~~~~~~~~l~-~~~~~e~r~a~a~~~~~l~~~l~  387 (759)
T KOG0211|consen  312 DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP---SATRTQLVPPVSNLL-KDEEWEVRYAIAKKVQKLACYLN  387 (759)
T ss_pred             hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc---ccCcccchhhHHHHh-cchhhhhhHHhhcchHHHhhhcC
Confidence            12234568888888888888887766665555421111   111122355666666 44445555555544445554432


Q ss_pred             --CCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHh
Q 009568          236 --QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI  313 (532)
Q Consensus       236 --~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl  313 (532)
                        .........++|.+-.+..+.+..++...+..+..+..-.+.  ...+ ....|.+...+.+..+.++....+.+..+
T Consensus       388 ~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k--~~ti-~~llp~~~~~l~de~~~V~lnli~~ls~~  464 (759)
T KOG0211|consen  388 ASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK--ERTI-SELLPLLIGNLKDEDPIVRLNLIDKLSLL  464 (759)
T ss_pred             cccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc--CcCc-cccChhhhhhcchhhHHHHHhhHHHHHHH
Confidence              122233456678888888888888888887777766533220  1011 14567777788888888999888887777


Q ss_pred             hcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHH
Q 009568          314 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAW  393 (532)
Q Consensus       314 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~  393 (532)
                      -..++...........+|.+..+-... ...++.+..+.+-.++....   ..+++...-+.+...+.+....+++.|+.
T Consensus       465 ~~v~~v~g~~~~s~slLp~i~el~~d~-~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~  540 (759)
T KOG0211|consen  465 EEVNDVIGISTVSNSLLPAIVELAEDL-LWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDHVYSIREAAAR  540 (759)
T ss_pred             HhccCcccchhhhhhhhhhhhhhccch-hHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhhHHHHHHHHHH
Confidence            665554444455667788888888777 78999999999988876322   23333334455555666677899999999


Q ss_pred             HHHHhhcCCCH-HHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHH
Q 009568          394 AISNATSGGTH-EQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLE  472 (532)
Q Consensus       394 aL~nl~~~~~~-~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  472 (532)
                      .+..++..-.. ..+.     ..++.+..+...++...+...+.++..+.....+.           .++     ...++
T Consensus       541 ~l~~l~~~~G~~w~~~-----~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~e-----------i~~-----~~Llp  599 (759)
T KOG0211|consen  541 NLPALVETFGSEWARL-----EEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQE-----------ITC-----EDLLP  599 (759)
T ss_pred             HhHHHHHHhCcchhHH-----HhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccH-----------HHH-----HHHhH
Confidence            99888763222 2222     35777777777777888899999998777665332           123     34468


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhCCCCc
Q 009568          473 KIENLQSHDNNEIYEKAVKILETYWLEED  501 (532)
Q Consensus       473 ~l~~L~~~~~~~v~~~a~~il~~~~~~~~  501 (532)
                      .+..+..++.++|+-.+.+.+..+...-.
T Consensus       600 ~~~~l~~D~vanVR~nvak~L~~i~~~L~  628 (759)
T KOG0211|consen  600 VFLDLVKDPVANVRINVAKHLPKILKLLD  628 (759)
T ss_pred             HHHHhccCCchhhhhhHHHHHHHHHhhcc
Confidence            88999999999999988888877765443

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.30  E-value=0.00062  Score=68.63  Aligned_cols=324  Identities=18%  Similarity=0.145  Sum_probs=192.6

Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 009568           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV  155 (532)
Q Consensus        76 l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  155 (532)
                      .-.-+++|+++--...+-+--.+.-++.. +.+..+.     ++..+.+=|.+.+ +....-|+.+++|+.+  .+.+..
T Consensus        76 hmEaV~LLss~kysEKqIGYl~is~L~n~-n~dl~kl-----vin~iknDL~srn-~~fv~LAL~~I~niG~--re~~ea  146 (938)
T KOG1077|consen   76 HMEAVNLLSSNKYSEKQIGYLFISLLLNE-NSDLMKL-----VINSIKNDLSSRN-PTFVCLALHCIANIGS--REMAEA  146 (938)
T ss_pred             hHHHHHHhhcCCccHHHHhHHHHHHHHhc-chHHHHH-----HHHHHHhhhhcCC-cHHHHHHHHHHHhhcc--HhHHHH
Confidence            34556666665544444444444444432 1222222     3444555556666 7889999999999986  455555


Q ss_pred             HHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCC
Q 009568          156 VIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG  233 (532)
Q Consensus       156 i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~  233 (532)
                      +.     +-+-++|.+  ..+-++..++.+|..+-..+|.   .+-..+....++.+| .+.+..+...+...+..|+..
T Consensus       147 ~~-----~DI~KlLvS~~~~~~vkqkaALclL~L~r~spD---l~~~~~W~~riv~LL-~D~~~gv~ta~~sLi~~lvk~  217 (938)
T KOG1077|consen  147 FA-----DDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPD---LVNPGEWAQRIVHLL-DDQHMGVVTAATSLIEALVKK  217 (938)
T ss_pred             hh-----hhhHHHHhCCcchHHHHHHHHHHHHHHHhcCcc---ccChhhHHHHHHHHh-CccccceeeehHHHHHHHHHc
Confidence            54     223355655  3467888888888888776654   232335677888888 555566666677777777766


Q ss_pred             CCCCCcccccchHHHHHHhhc-------------CCCHHHHHHHHHHHHHhccCCh-hHHHHHHHhCchHHHHHhhCCC-
Q 009568          234 KPQPPFDQVRPALPALAQLVH-------------SNDEEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLGHP-  298 (532)
Q Consensus       234 ~~~~~~~~~~~~l~~L~~lL~-------------~~d~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~-  298 (532)
                      .|..........+..|.++..             -+.|.+...+++.|.++-...+ .....+.  .++..++...+.+ 
T Consensus       218 ~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~~  295 (938)
T KOG1077|consen  218 NPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLN--EVLERILNKAQEPP  295 (938)
T ss_pred             CCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHH--HHHHHHHhccccCc
Confidence            543322222222222222221             2457788888888887743222 1111111  3444454444421 


Q ss_pred             -C-----ccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 009568          299 -S-----PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGL  372 (532)
Q Consensus       299 -~-----~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~  372 (532)
                       .     .......+.-.-+++...+..-..+.  ..+..|-.+|.+. ...+|.-|...++.++...+ .++.+-.+  
T Consensus       296 ~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~r-E~NiRYLaLEsm~~L~ss~~-s~davK~h--  369 (938)
T KOG1077|consen  296 KSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHR-ETNIRYLALESMCKLASSEF-SIDAVKKH--  369 (938)
T ss_pred             cccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcc-cccchhhhHHHHHHHHhccc-hHHHHHHH--
Confidence             1     11233344444455554443333222  4677888999888 88999999999999987532 23333333  


Q ss_pred             HHHHHHHHh-cCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHH
Q 009568          373 VGPLVNLLQ-NAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTV  433 (532)
Q Consensus       373 i~~L~~ll~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~  433 (532)
                      ...++..|. ..|..+|+.|+..|..+|...+..+        ++.-|+++|.+.|+.++.-
T Consensus       370 ~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~--------IV~elLqYL~tAd~siree  423 (938)
T KOG1077|consen  370 QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQ--------IVAELLQYLETADYSIREE  423 (938)
T ss_pred             HHHHHHHhccccchHHHHHHHHHHHHHhchhhHHH--------HHHHHHHHHhhcchHHHHH
Confidence            567788888 5689999999999999998654332        4556777777777766643

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.29  E-value=8.2e-05  Score=72.51  Aligned_cols=314  Identities=18%  Similarity=0.170  Sum_probs=191.4

Q ss_pred             HHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCChhhHHH
Q 009568           77 PAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-YPQLQFEAAWALTNIASGTSENTKV  155 (532)
Q Consensus        77 ~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~  155 (532)
                      +.+...+-+++.+++..|.+.+|.++..  ....+.+.+.++--.++.-|..++ +..=|.+|+..+..+..-.. ..+ 
T Consensus        28 ~~i~~~lL~~~~~vraa~yRilRy~i~d--~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~-~~~-  103 (371)
T PF14664_consen   28 ERIQCMLLSDSKEVRAAGYRILRYLISD--EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK-GPK-  103 (371)
T ss_pred             HHHHHHHCCCcHHHHHHHHHHHHHHHcC--HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC-Ccc-
Confidence            4444445556699999999999999985  466777777776666666666543 35568899999888876311 111 


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCC
Q 009568          156 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP  235 (532)
Q Consensus       156 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~  235 (532)
                      .+..|++..++.+..++++.++..|+.+|+.++..+|.   .+...|++..|++.+.+ ...++...++.++..+...+.
T Consensus       104 ~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d-~~~~~~~~l~~~lL~lLd~p~  179 (371)
T PF14664_consen  104 EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALID-GSFSISESLLDTLLYLLDSPR  179 (371)
T ss_pred             cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHh-ccHhHHHHHHHHHHHHhCCcc
Confidence            23457889999999999999999999999999988775   67889999999999954 444488889999999998864


Q ss_pred             CCCcccccchHHHHHHhh-cC------CCH--HHHHHHHHHHHHhccCChhHHHHHHH-hCchHHHHHhhCCCCccchhh
Q 009568          236 QPPFDQVRPALPALAQLV-HS------NDE--EVLTDACWALSYLSDGTNDKIQAVIE-AGVCPRLVELLGHPSPSVLIP  305 (532)
Q Consensus       236 ~~~~~~~~~~l~~L~~lL-~~------~d~--~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~v~~~  305 (532)
                      .........-+..+..-+ ..      ++.  +....+..++..+...=+.......+ ...+..|+..|..+++.++..
T Consensus       180 tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~  259 (371)
T PF14664_consen  180 TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKA  259 (371)
T ss_pred             hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHH
Confidence            444333322233322222 11      122  34444555555444322221111111 146778888999898889998


Q ss_pred             HHHHHHHhhcCCcc-hhHHH------hhcCch---HHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHH
Q 009568          306 ALRTVGNIVTGDDF-QTQCI------ITYGAL---PYLLGLLTHSHKKSIKKEACWTISNITAG-NRDQIQAVIDAGLVG  374 (532)
Q Consensus       306 al~~L~nl~~~~~~-~~~~~------~~~~~l---~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~  374 (532)
                      .+.++..+..-... .....      ...+-.   ..+..-.... ........ .--.++..+ ..-....+++.|+++
T Consensus       260 Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~-~~~~~~~~-~~~~~l~~~y~aLll~ili~~gL~~  337 (371)
T PF14664_consen  260 ILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEA-KSILPHRS-SKRPNLVNHYLALLLAILIEAGLLE  337 (371)
T ss_pred             HHHHHHHHHCCCCCCcccchhhcccccccccccchhhhccccccc-ccccCccc-cccccHHHHHHHHHHHHHHHcChHH
Confidence            88888887653221 11111      111111   0000000000 00000000 000111111 011233466899999


Q ss_pred             HHHHHHhcC-chhHHHHHHHHHHHhhc
Q 009568          375 PLVNLLQNA-EFDIKKEAAWAISNATS  400 (532)
Q Consensus       375 ~L~~ll~~~-~~~v~~~a~~aL~nl~~  400 (532)
                      .|+++.... +..+...|...|+.+..
T Consensus       338 ~L~~li~~~~d~~l~~KAtlLL~elL~  364 (371)
T PF14664_consen  338 ALVELIESSEDSSLSRKATLLLGELLH  364 (371)
T ss_pred             HHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            999999987 88899999988887653

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.24  E-value=6.4e-05  Score=81.63  Aligned_cols=379  Identities=13%  Similarity=0.128  Sum_probs=204.5

Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHHhcCCC-CCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhc-CChhhH
Q 009568           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIER-SPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS-GTSENT  153 (532)
Q Consensus        76 l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~-~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~-~~~~~~  153 (532)
                      ...+...+.+++|..|..++.-|-.+...-. .+.+. .....+...|..+|.+.+ .-.|..|.+.++-+-. ++...+
T Consensus       820 ~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~-l~~~eI~~aF~~~Lsd~d-Ef~QDvAsrGlglVYelgd~~~k  897 (1702)
T KOG0915|consen  820 LKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVV-LMLKEIQEAFSHLLSDND-EFSQDVASRGLGLVYELGDSSLK  897 (1702)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhh-hccHHHHHHHHHHhcccH-HHHHHHHhcCceEEEecCCchhH
Confidence            4556667779999998887655555444321 22222 223346688999999887 7888888877766543 334444


Q ss_pred             HHHHhCCChHHHHHhhCC---------CCHHHHH-------------HHHHHHHHhhCCCchhHHHHHhcCChHHHHHHh
Q 009568          154 KVVIDHGAVPIFVKLLAS---------PSDDVRE-------------QAVWALGNVAGDSPRCRDLVLSQGALIPLLAQL  211 (532)
Q Consensus       154 ~~i~~~g~i~~L~~lL~~---------~~~~v~~-------------~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll  211 (532)
                      +.++     ..|+.-|..         ++.++.+             ..-.-|+|+|++-..       -+.+-.++++-
T Consensus       898 ~~LV-----~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~q-------PdLVYKFM~LA  965 (1702)
T KOG0915|consen  898 KSLV-----DSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQ-------PDLVYKFMQLA  965 (1702)
T ss_pred             HHHH-----HHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCC-------hHHHHHHHHHh
Confidence            4443     444544422         1111111             111224444432111       01123334443


Q ss_pred             hhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHh-ccCChhHHHHHHHhCchHH
Q 009568          212 NERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYL-SDGTNDKIQAVIEAGVCPR  290 (532)
Q Consensus       212 ~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l-~~~~~~~~~~~~~~~~l~~  290 (532)
                      +.+..-.-+.-|+.-+..++.............++|.|.+.=.+++..|+... .-|++. ...+...+..... .++..
T Consensus       966 nh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM-~sIW~~Li~D~k~~vd~y~n-eIl~e 1043 (1702)
T KOG0915|consen  966 NHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAM-TSIWNALITDSKKVVDEYLN-EILDE 1043 (1702)
T ss_pred             hhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHH-HHHHHHhccChHHHHHHHHH-HHHHH
Confidence            22222222333444444444433222223345566666666667777776544 445554 4333444443333 78888


Q ss_pred             HHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhc--CchHHHHHHhcCCCchhHHHH---HHHHHHHHhcC-----C
Q 009568          291 LVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITY--GALPYLLGLLTHSHKKSIKKE---ACWTISNITAG-----N  360 (532)
Q Consensus       291 L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~--~~l~~L~~lL~~~~~~~v~~~---a~~~L~nl~~~-----~  360 (532)
                      |+.-|.+..|.+|+.+|.+|..|..+.+..  .+.+.  .+...+.+.+.+- .+.||+.   ++.+|+.++..     +
T Consensus      1044 LL~~lt~kewRVReasclAL~dLl~g~~~~--~~~e~lpelw~~~fRvmDDI-KEsVR~aa~~~~~~lsKl~vr~~d~~~ 1120 (1702)
T KOG0915|consen 1044 LLVNLTSKEWRVREASCLALADLLQGRPFD--QVKEKLPELWEAAFRVMDDI-KESVREAADKAARALSKLCVRICDVTN 1120 (1702)
T ss_pred             HHHhccchhHHHHHHHHHHHHHHHcCCChH--HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccCC
Confidence            999999999999999999999999987622  12221  3444455555554 5567765   45667766641     1


Q ss_pred             HHHHHHHHHcCCHHHHHHH-HhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHH-HHHH
Q 009568          361 RDQIQAVIDAGLVGPLVNL-LQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVC-LEGL  438 (532)
Q Consensus       361 ~~~~~~l~~~~~i~~L~~l-l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~a-l~~L  438 (532)
                      +..-+.+++ .++|.|+.- +.++-.++|+-++.++..++........+++-  .+++.|++.++.-.+.+.... +.+ 
T Consensus      1121 ~~~~~~~l~-~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~--~LIp~ll~~~s~lE~~vLnYls~r~- 1196 (1702)
T KOG0915|consen 1121 GAKGKEALD-IILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFP--KLIPLLLNAYSELEPQVLNYLSLRL- 1196 (1702)
T ss_pred             cccHHHHHH-HHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhh--HHHHHHHHHccccchHHHHHHHHhh-
Confidence            111222222 255655541 12556799999999999999876555444433  378888888877666554332 222 


Q ss_pred             HHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHH
Q 009568          439 ENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEK  488 (532)
Q Consensus       439 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~  488 (532)
                      .++=...           -.+.........-..+.|+.+.++-|..+-..
T Consensus      1197 ~~~e~ea-----------lDt~R~s~aksspmmeTi~~ci~~iD~~vLee 1235 (1702)
T KOG0915|consen 1197 INIETEA-----------LDTLRASAAKSSPMMETINKCINYIDISVLEE 1235 (1702)
T ss_pred             hhhHHHH-----------HHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHH
Confidence            2221100           11112233333444566777766666555443

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.22  E-value=2.6e-06  Score=54.18  Aligned_cols=41  Identities=44%  Similarity=0.890  Sum_probs=38.2

Q ss_pred             ChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 009568          149 TSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAG  189 (532)
Q Consensus       149 ~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~  189 (532)
                      +++++..+++.|++|.|+++|.++++.+++.|+|+|+||+.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            46788999999999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.20  E-value=0.00029  Score=68.87  Aligned_cols=215  Identities=26%  Similarity=0.341  Sum_probs=155.0

Q ss_pred             CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q 009568          117 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD  196 (532)
Q Consensus       117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~  196 (532)
                      ..++.+.+++.+++ ..++..|++.++.+..           .-+++.+..++.+.++.+|..++.+|+.+-  .+.   
T Consensus        43 ~~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~~~---  105 (335)
T COG1413          43 EAADELLKLLEDED-LLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELG--DPE---  105 (335)
T ss_pred             hhHHHHHHHHcCCC-HHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC--Chh---
Confidence            36888999999987 8999999999777664           235799999999999999999999999872  121   


Q ss_pred             HHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCH------------HHHHHH
Q 009568          197 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDE------------EVLTDA  264 (532)
Q Consensus       197 ~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~------------~v~~~a  264 (532)
                            .++.++.++..+.+..++..+.++|..+-..          ..+..++..+.+...            .++..+
T Consensus       106 ------a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a  169 (335)
T COG1413         106 ------AVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAA  169 (335)
T ss_pred             ------HHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence                  4788999995578999999999999987764          335666677766542            234444


Q ss_pred             HHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchh
Q 009568          265 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKS  344 (532)
Q Consensus       265 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~  344 (532)
                      ...++.+-           +...++.+...+.+....++..+..+|+.+....         ..+.+.+...+.+. +..
T Consensus       170 ~~~l~~~~-----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~  228 (335)
T COG1413         170 AEALGELG-----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SLE  228 (335)
T ss_pred             HHHHHHcC-----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CHH
Confidence            44443332           1245677777888877788888888888877654         24456777777777 888


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHH
Q 009568          345 IKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAIS  396 (532)
Q Consensus       345 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~  396 (532)
                      +|..++..++.+-...           .++.++..+...+..++..+..++.
T Consensus       229 vr~~~~~~l~~~~~~~-----------~~~~l~~~l~~~~~~~~~~~~~~~~  269 (335)
T COG1413         229 VRKAALLALGEIGDEE-----------AVDALAKALEDEDVILALLAAAALG  269 (335)
T ss_pred             HHHHHHHHhcccCcch-----------hHHHHHHHHhccchHHHHHHHHHhc
Confidence            8888888888775321           3456666777776666665555554

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.19  E-value=2.9e-05  Score=61.43  Aligned_cols=153  Identities=8%  Similarity=0.025  Sum_probs=120.8

Q ss_pred             chHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHH
Q 009568          329 ALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIK  408 (532)
Q Consensus       329 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~  408 (532)
                      .+..|+.-+....+.+.+.....-|.|++.. |.....+.+.+++..+++.+...+..+...+..+|+|+|.  ++...+
T Consensus        17 Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~--d~~n~~   93 (173)
T KOG4646|consen   17 YLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL--DKTNAK   93 (173)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc--ChHHHH
Confidence            3445555555554788888888888888754 6667788899999999999999999999999999999998  567788


Q ss_pred             HHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHH
Q 009568          409 YLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEK  488 (532)
Q Consensus       409 ~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~  488 (532)
                      .+.+.+.++.++..++++...++..++.++..+...+..             +...+-....++.++....+.+-+.+..
T Consensus        94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt-------------~r~ell~p~Vv~~v~r~~~s~s~~~rnL  160 (173)
T KOG4646|consen   94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERT-------------ERDELLSPAVVRTVQRWRESKSHDERNL  160 (173)
T ss_pred             HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccc-------------hhHHhccHHHHHHHHHHHHHhhHHHHHH
Confidence            889999999999999999999998888877766443222             3455555666778888777777778888


Q ss_pred             HHHHHHHhC
Q 009568          489 AVKILETYW  497 (532)
Q Consensus       489 a~~il~~~~  497 (532)
                      |...++++-
T Consensus       161 a~~fl~~~~  169 (173)
T KOG4646|consen  161 ASAFLDKHV  169 (173)
T ss_pred             HHHHHHhhc
Confidence            888887764

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.17  E-value=0.00012  Score=77.93  Aligned_cols=267  Identities=15%  Similarity=0.126  Sum_probs=175.0

Q ss_pred             hHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccC----ChhHH
Q 009568          204 LIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG----TNDKI  279 (532)
Q Consensus       204 l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~----~~~~~  279 (532)
                      +..+...+..-.....+..|+..|..|+...  ........++|.++.++.+++..|+..|+.+|..+...    .+.. 
T Consensus       424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i--~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~d-  500 (1431)
T KOG1240|consen  424 VSVLTSCIRALKTIQTKLAALELLQELSTYI--DDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSD-  500 (1431)
T ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHhhhc--chHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCccc-
Confidence            3444444433335667888888888888763  34455678999999999999999999999999877532    2222 


Q ss_pred             HHHHHhCchHHHHHhhCC-CCccchhhHHHHHHHhhcCCc---chhHH-------------------------HhhcCch
Q 009568          280 QAVIEAGVCPRLVELLGH-PSPSVLIPALRTVGNIVTGDD---FQTQC-------------------------IITYGAL  330 (532)
Q Consensus       280 ~~~~~~~~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~---~~~~~-------------------------~~~~~~l  330 (532)
                      ..++..=++|.|-.++.+ ....++..-+.+|+.|+...-   ..++.                         -+..++-
T Consensus       501 aniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~  580 (1431)
T KOG1240|consen  501 ANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVE  580 (1431)
T ss_pred             chhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHH
Confidence            224444678888888877 455566666666666652100   00111                         0111334


Q ss_pred             HHHHHHhcCCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHH
Q 009568          331 PYLLGLLTHSHKKSIKKEACWTISNITA--GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIK  408 (532)
Q Consensus       331 ~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~  408 (532)
                      ..+..+|.++ ++.||+.....|+-||.  |...     -+.-+++.|+.+|.+.|+.+|..-...|.-++..-...-  
T Consensus       581 ~~v~sLlsd~-~~~Vkr~Lle~i~~LC~FFGk~k-----sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs--  652 (1431)
T KOG1240|consen  581 QMVSSLLSDS-PPIVKRALLESIIPLCVFFGKEK-----SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRS--  652 (1431)
T ss_pred             HHHHHHHcCC-chHHHHHHHHHHHHHHHHhhhcc-----cccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeee--
Confidence            5556667766 67788777777777764  2110     112368899999999999888776666665544222111  


Q ss_pred             HHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHH
Q 009568          409 YLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEK  488 (532)
Q Consensus       409 ~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~  488 (532)
                        +++.+++.|.+-|.+..+-|+..||.+|..+++.+--.+.          +..     ..++.+--|.-|+|.=|+..
T Consensus       653 --~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~----------~v~-----~i~~~v~PlL~hPN~WIR~~  715 (1431)
T KOG1240|consen  653 --VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKP----------AVK-----DILQDVLPLLCHPNLWIRRA  715 (1431)
T ss_pred             --HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchH----------HHH-----HHHHhhhhheeCchHHHHHH
Confidence              2345788999999999999999999999999987643221          121     12345566788999999999


Q ss_pred             HHHHHHHhCC
Q 009568          489 AVKILETYWL  498 (532)
Q Consensus       489 a~~il~~~~~  498 (532)
                      +..+|-....
T Consensus       716 ~~~iI~~~~~  725 (1431)
T KOG1240|consen  716 VLGIIAAIAR  725 (1431)
T ss_pred             HHHHHHHHHh
Confidence            8887765543

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=98.16  E-value=0.00047  Score=69.42  Aligned_cols=253  Identities=15%  Similarity=0.125  Sum_probs=166.6

Q ss_pred             chhHhhhCCcHHHHHHhh---------cCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCC-----CH
Q 009568          109 PIEEVIQSGVVPRFVEFL---------MREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASP-----SD  174 (532)
Q Consensus       109 ~~~~~i~~g~i~~Lv~lL---------~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-----~~  174 (532)
                      ..+.+.....+..|.++-         ....++.+..+|++||+|+...++..+..+++.|..+.++..|+..     +.
T Consensus        14 ~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~   93 (446)
T PF10165_consen   14 GLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPS   93 (446)
T ss_pred             cchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCCh
Confidence            444455555566666654         2233489999999999999999999999999999999999999875     67


Q ss_pred             HHHHHHHHHHHHhhCCCchhHHHHHh-cCChHHHHHHhhhh----------------hhhHHHHHHHHHhhhccCCCCCC
Q 009568          175 DVREQAVWALGNVAGDSPRCRDLVLS-QGALIPLLAQLNER----------------AKLSMLRNATWTLSNFCRGKPQP  237 (532)
Q Consensus       175 ~v~~~a~~~L~nl~~~~~~~~~~~~~-~~~l~~L~~ll~~~----------------~~~~~~~~a~~~L~~L~~~~~~~  237 (532)
                      ++.-...++|--++...+..+..+.+ .+++..++..+...                .+......++.++.|+....+..
T Consensus        94 d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~  173 (446)
T PF10165_consen   94 DVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKS  173 (446)
T ss_pred             hHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcc
Confidence            88888888888888777777766554 46677776665311                24456777888888988776433


Q ss_pred             Cccccc----chHHHHHHhh---cC--CCHHHHHHHHHHHHHhccCChhHH-----------HHHHHhCchHHHHHhhCC
Q 009568          238 PFDQVR----PALPALAQLV---HS--NDEEVLTDACWALSYLSDGTNDKI-----------QAVIEAGVCPRLVELLGH  297 (532)
Q Consensus       238 ~~~~~~----~~l~~L~~lL---~~--~d~~v~~~a~~~L~~l~~~~~~~~-----------~~~~~~~~l~~L~~lL~~  297 (532)
                      ......    .++..+..++   ..  +......+++.+|.++-.......           ........+..|+.+|..
T Consensus       174 ~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~  253 (446)
T PF10165_consen  174 VPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDK  253 (446)
T ss_pred             cchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHH
Confidence            322333    3444444442   11  134567777777877632111110           001122355666666532


Q ss_pred             -----C---CccchhhHHHHHHHhhcCCcchhHHHhh----------------cCchHHHHHHhcCCCchhHHHHHHHHH
Q 009568          298 -----P---SPSVLIPALRTVGNIVTGDDFQTQCIIT----------------YGALPYLLGLLTHSHKKSIKKEACWTI  353 (532)
Q Consensus       298 -----~---~~~v~~~al~~L~nl~~~~~~~~~~~~~----------------~~~l~~L~~lL~~~~~~~v~~~a~~~L  353 (532)
                           .   -.....+.+.+|.+++......++.+-.                ..+-..|++++.+. .+.++..+...+
T Consensus       254 ~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~-~~~~k~~vaell  332 (446)
T PF10165_consen  254 RLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP-DPQLKDAVAELL  332 (446)
T ss_pred             HHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC-CchHHHHHHHHH
Confidence                 1   1357888999999999876544444321                24567788888888 688999888888


Q ss_pred             HHHhcCCHH
Q 009568          354 SNITAGNRD  362 (532)
Q Consensus       354 ~nl~~~~~~  362 (532)
                      -.+|..+..
T Consensus       333 f~Lc~~d~~  341 (446)
T PF10165_consen  333 FVLCKEDAS  341 (446)
T ss_pred             HHHHhhhHH
Confidence            888865544

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.16  E-value=0.0018  Score=65.37  Aligned_cols=338  Identities=16%  Similarity=0.143  Sum_probs=193.5

Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHh
Q 009568          121 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLS  200 (532)
Q Consensus       121 ~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~  200 (532)
                      .-+++|+++..++ +......+.-+...+.+..+.+     +..+..=|.+.++.....|+.+++|+-+.  +++..+  
T Consensus        78 EaV~LLss~kysE-KqIGYl~is~L~n~n~dl~klv-----in~iknDL~srn~~fv~LAL~~I~niG~r--e~~ea~--  147 (938)
T KOG1077|consen   78 EAVNLLSSNKYSE-KQIGYLFISLLLNENSDLMKLV-----INSIKNDLSSRNPTFVCLALHCIANIGSR--EMAEAF--  147 (938)
T ss_pred             HHHHHhhcCCccH-HHHhHHHHHHHHhcchHHHHHH-----HHHHHhhhhcCCcHHHHHHHHHHHhhccH--hHHHHh--
Confidence            3467777766433 2223333333444344443333     35666667778888899999999999432  223332  


Q ss_pred             cCChHHHHHHhhh-hhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHH
Q 009568          201 QGALIPLLAQLNE-RAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKI  279 (532)
Q Consensus       201 ~~~l~~L~~ll~~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~  279 (532)
                         -.-+-++|.. +...-++..++.+|..|.+..  ++.....+-...++.+|.+.+-.+...+...+-.++...++..
T Consensus       148 ---~~DI~KlLvS~~~~~~vkqkaALclL~L~r~s--pDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~y  222 (938)
T KOG1077|consen  148 ---ADDIPKLLVSGSSMDYVKQKAALCLLRLFRKS--PDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESY  222 (938)
T ss_pred             ---hhhhHHHHhCCcchHHHHHHHHHHHHHHHhcC--ccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHH
Confidence               1222344533 335567788888888888874  3444445677889999998888888888888888886655443


Q ss_pred             HHHHHhCchHHHHHhhC-------------CCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCC-c---
Q 009568          280 QAVIEAGVCPRLVELLG-------------HPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH-K---  342 (532)
Q Consensus       280 ~~~~~~~~l~~L~~lL~-------------~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~---  342 (532)
                      ...+. ..+..|..+..             -+.|-+....+++|.++-...+..+..-+ ..+++.++...+... .   
T Consensus       223 k~~~~-~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l-~evl~~iLnk~~~~~~~k~v  300 (938)
T KOG1077|consen  223 KTCLP-LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARL-NEVLERILNKAQEPPKSKKV  300 (938)
T ss_pred             hhhHH-HHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHH-HHHHHHHHhccccCccccch
Confidence            32221 11222222221             13455677788888877443332222111 123334443333110 1   


Q ss_pred             --hhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHH
Q 009568          343 --KSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLC  420 (532)
Q Consensus       343 --~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~  420 (532)
                        ...+....+-.-+++.+-...-..+.+  .+..|.+++.+.+..+|--|...++.+++....  ...+..  -.+.++
T Consensus       301 q~~na~naVLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s--~davK~--h~d~Ii  374 (938)
T KOG1077|consen  301 QHSNAKNAVLFEAISLAIHLDSEPELLSR--AVNQLGQFLSHRETNIRYLALESMCKLASSEFS--IDAVKK--HQDTII  374 (938)
T ss_pred             HhhhhHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhhcccccchhhhHHHHHHHHhccch--HHHHHH--HHHHHH
Confidence              122333344444554421111112222  567889999999999999999999999986432  222222  167788


Q ss_pred             hhcC-CCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009568          421 DLFV-CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW  497 (532)
Q Consensus       421 ~lL~-~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~  497 (532)
                      ..|+ ..|..++..+++.|+.++..+..               ..|. .+.+..|+....+--+++.-++.-+-|+|-
T Consensus       375 ~sLkterDvSirrravDLLY~mcD~~Na---------------k~IV-~elLqYL~tAd~sireeivlKvAILaEKyA  436 (938)
T KOG1077|consen  375 NSLKTERDVSIRRRAVDLLYAMCDVSNA---------------KQIV-AELLQYLETADYSIREEIVLKVAILAEKYA  436 (938)
T ss_pred             HHhccccchHHHHHHHHHHHHHhchhhH---------------HHHH-HHHHHHHhhcchHHHHHHHHHHHHHHHHhc
Confidence            8888 78999999999999999865432               2222 233445554444444555555554555553

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.16  E-value=4.4e-06  Score=53.11  Aligned_cols=41  Identities=37%  Similarity=0.713  Sum_probs=37.9

Q ss_pred             CHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009568          360 NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS  400 (532)
Q Consensus       360 ~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~  400 (532)
                      ++++++.+++.|++|.|+.+|.+.+++++++|+|+|+|++.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            46788899999999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.14  E-value=0.0012  Score=72.12  Aligned_cols=318  Identities=16%  Similarity=0.170  Sum_probs=182.3

Q ss_pred             CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch--h
Q 009568          117 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR--C  194 (532)
Q Consensus       117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~--~  194 (532)
                      .+||.|.+.=-+++ +.+|..-..+...+..++....+.... .++.-|+.-|.+....+|+.++.+|..+....+.  .
T Consensus       998 kLIPrLyRY~yDP~-~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~ 1075 (1702)
T KOG0915|consen  998 KLIPRLYRYQYDPD-KKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLVNLTSKEWRVREASCLALADLLQGRPFDQV 1075 (1702)
T ss_pred             HhhHHHhhhccCCc-HHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHH
Confidence            37888888766777 888888877777777755555554443 5667777778888899999999999999865543  2


Q ss_pred             HHHHHhcCChHHHHHHhhhhhhhHHHHH---HHHHhhhccCCC-C----CCCcccccchHHHHHH-hhcCCCHHHHHHHH
Q 009568          195 RDLVLSQGALIPLLAQLNERAKLSMLRN---ATWTLSNFCRGK-P----QPPFDQVRPALPALAQ-LVHSNDEEVLTDAC  265 (532)
Q Consensus       195 ~~~~~~~~~l~~L~~ll~~~~~~~~~~~---a~~~L~~L~~~~-~----~~~~~~~~~~l~~L~~-lL~~~d~~v~~~a~  265 (532)
                      .+.+.+  ....+++.+ ++-.+.++..   ++.+|+.+|-.. .    .........++|.|.. -+-+.-++++..++
T Consensus      1076 ~e~lpe--lw~~~fRvm-DDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si 1152 (1702)
T KOG0915|consen 1076 KEKLPE--LWEAAFRVM-DDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSI 1152 (1702)
T ss_pred             HHHHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHH
Confidence            233221  344444444 4555566555   455666665433 1    1122233444554441 11255688999999


Q ss_pred             HHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchh-hHHHH----------HH-HhhcCCcc--hhHHH-------
Q 009568          266 WALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLI-PALRT----------VG-NIVTGDDF--QTQCI-------  324 (532)
Q Consensus       266 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~-~al~~----------L~-nl~~~~~~--~~~~~-------  324 (532)
                      .++..++........... ..++|.|+...+.-++.+.. .++++          +. +.+.+++.  .....       
T Consensus      1153 ~tl~dl~Kssg~~lkP~~-~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~ 1231 (1702)
T KOG0915|consen 1153 GTLMDLAKSSGKELKPHF-PKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDIS 1231 (1702)
T ss_pred             HHHHHHHHhchhhhcchh-hHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHH
Confidence            999999977665444322 24566666666554444322 22222          11 11222220  00000       


Q ss_pred             hhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCH
Q 009568          325 ITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTH  404 (532)
Q Consensus       325 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~  404 (532)
                      +-..++|.+.++++.+..-..|..++..++-++........+... .++..++..+.+.+..+++.-+.|.+.++....+
T Consensus      1232 vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sg-Kll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~ 1310 (1702)
T KOG0915|consen 1232 VLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSG-KLLRALFPGAKDRNESVRKAFASAMGYLAKFSSP 1310 (1702)
T ss_pred             HHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchh-HHHHHHhhccccccHHHHHHHHHHHHHHHhcCCh
Confidence            112456777777766544455666666666665421111111111 1355666666777899999999999999998888


Q ss_pred             HHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 009568          405 EQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGE  446 (532)
Q Consensus       405 ~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~  446 (532)
                      ++...+++     .+...+-.+++.....++..+.+|.....
T Consensus      1311 dq~qKLie-----~~l~~~l~k~es~~siscatis~Ian~s~ 1347 (1702)
T KOG0915|consen 1311 DQMQKLIE-----TLLADLLGKDESLKSISCATISNIANYSQ 1347 (1702)
T ss_pred             HHHHHHHH-----HHHHHHhccCCCccchhHHHHHHHHHhhH
Confidence            78777543     33332222222222445555555544433

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=98.14  E-value=0.004  Score=62.57  Aligned_cols=347  Identities=16%  Similarity=0.137  Sum_probs=199.5

Q ss_pred             HHHHhhhcCCCh---HHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh-
Q 009568           77 PAMVAGVWSDDS---SLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN-  152 (532)
Q Consensus        77 ~~lv~~L~s~~~---~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~-  152 (532)
                      |.++..|.+.+.   ......+..|..+...   +.+-..+...++..+...+....+.+....++.+|.++.....+. 
T Consensus         2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~---~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~   78 (415)
T PF12460_consen    2 PALLALLPDSDSSTDSNYERILEALAALSTS---PQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDK   78 (415)
T ss_pred             chHHhhCCCCCCcchhHHHHHHHHHHHHHCC---hhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccc
Confidence            556666665544   4455677888887763   332222222455555555544434677777888888876533222 


Q ss_pred             ----HHHHHhCCChHHHHHhhCC-----C--CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhh---------
Q 009568          153 ----TKVVIDHGAVPIFVKLLAS-----P--SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN---------  212 (532)
Q Consensus       153 ----~~~i~~~g~i~~L~~lL~~-----~--~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~---------  212 (532)
                          .....+..+++.+......     .  ++.+...+..++..++..-+..+..-    .+..+..+..         
T Consensus        79 ~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~----~~~~~~~lf~~~~~~~~~~  154 (415)
T PF12460_consen   79 QFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE----ILDELYSLFLSPKSFSPFQ  154 (415)
T ss_pred             ccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH----HHHHHHHHHccccccCCCC
Confidence                2333344477777776532     1  25666667777776665443322221    1333333331         


Q ss_pred             --hh----hhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhc-CCCHHHHHHHHHHHHHhccCC--hhHHHHHH
Q 009568          213 --ER----AKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH-SNDEEVLTDACWALSYLSDGT--NDKIQAVI  283 (532)
Q Consensus       213 --~~----~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~l~~~~--~~~~~~~~  283 (532)
                        .+    .......-...+++.+-..   ........++..++.+.. ..++..+..++.+++-++...  ++...   
T Consensus       155 ~~~~~~~~~~~~~~~l~~~il~~l~~~---~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~---  228 (415)
T PF12460_consen  155 PSSSTISEQQSRLVILFSAILCSLRKD---VSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLD---  228 (415)
T ss_pred             ccccccccccccHHHHHHHHHHcCCcc---cCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHH---
Confidence              00    1112222233333333333   222233446777776654 446788888888888887552  22122   


Q ss_pred             HhCchHHHHHhh-CCCCccchhhHHHHHHHhh----cCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 009568          284 EAGVCPRLVELL-GHPSPSVLIPALRTVGNIV----TGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (532)
Q Consensus       284 ~~~~l~~L~~lL-~~~~~~v~~~al~~L~nl~----~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  358 (532)
                        .++..+...+ .......+..++.++..++    ...+....     ..+..|+.+|.+   +.+...|+..++-+..
T Consensus       229 --~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~~~L~~lL~~---~~~g~~aA~~f~il~~  298 (415)
T PF12460_consen  229 --EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----ELLDKLLELLSS---PELGQQAAKAFGILLS  298 (415)
T ss_pred             --HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHHHHhCC---hhhHHHHHHHHhhHhc
Confidence              3344444444 3334444555555544443    22222222     345678888875   5678888888888876


Q ss_pred             CCHH--------HHHHHHHcC----CHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCC
Q 009568          359 GNRD--------QIQAVIDAG----LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCP  426 (532)
Q Consensus       359 ~~~~--------~~~~l~~~~----~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~  426 (532)
                      ..++        .++.+.+..    ++|.|++.....+...+.....||.++..+.+...... --..++|.|++.|+.+
T Consensus       299 d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~-~l~~LlPLLlqsL~~~  377 (415)
T PF12460_consen  299 DSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLP-ELPTLLPLLLQSLSLP  377 (415)
T ss_pred             CcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHH-HHHHHHHHHHHHhCCC
Confidence            5332        233333332    57788887777777789999999999998765443222 1134899999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhhhh
Q 009568          427 DPRIVTVCLEGLENILKVGEA  447 (532)
Q Consensus       427 d~~v~~~al~~L~~l~~~~~~  447 (532)
                      |++++..++++|..++...+.
T Consensus       378 ~~~v~~s~L~tL~~~l~~~~~  398 (415)
T PF12460_consen  378 DADVLLSSLETLKMILEEAPE  398 (415)
T ss_pred             CHHHHHHHHHHHHHHHHcCHH
Confidence            999999999999999986543

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.13  E-value=5.7e-05  Score=75.28  Aligned_cols=250  Identities=16%  Similarity=0.142  Sum_probs=159.3

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHH---HHhhhccCCC---CCC
Q 009568          164 IFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNAT---WTLSNFCRGK---PQP  237 (532)
Q Consensus       164 ~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~---~~L~~L~~~~---~~~  237 (532)
                      .|..+..+.+..++.+|+.+|..+.. .-..-..     .....+.++ .+.+..++..|+   |.++|.+-.+   ...
T Consensus       202 ~l~~~~~~~D~~Vrt~A~eglL~L~e-g~kL~~~-----~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~  274 (823)
T KOG2259|consen  202 GLIYLEHDQDFRVRTHAVEGLLALSE-GFKLSKA-----CYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERESE  274 (823)
T ss_pred             HHHHHhcCCCcchHHHHHHHHHhhcc-cccccHH-----HHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccchhh
Confidence            36666677777888888887777754 2222111     345566677 677788888774   5555655322   112


Q ss_pred             CcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcC-
Q 009568          238 PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG-  316 (532)
Q Consensus       238 ~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~-  316 (532)
                      .......++..+...+.+-...|+..|..+|+.+..-+.+.+...++..++..+-..-...   -+-..+..=|..++| 
T Consensus       275 e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ah---krpk~l~s~GewSsGk  351 (823)
T KOG2259|consen  275 EEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAH---KRPKALYSSGEWSSGK  351 (823)
T ss_pred             hhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcc---cchHHHHhcCCcccCc
Confidence            2233456777788888888889999999999988877777777777766555332211100   011111111111111 


Q ss_pred             ----------CcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchh
Q 009568          317 ----------DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFD  386 (532)
Q Consensus       317 ----------~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~  386 (532)
                                .+.....++.+|+--.++.-|.+. -.+||+.|...++.++...|.....     .+..|++++.+....
T Consensus       352 ~~~advpsee~d~~~~siI~sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~  425 (823)
T KOG2259|consen  352 EWNADVPSEEDDEEEESIIPSGACGALVHGLEDE-FYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEV  425 (823)
T ss_pred             cccccCchhhccccccccccccccceeeeechHH-HHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHH
Confidence                      223344577888888888888877 7899999999999999876664433     456889999988889


Q ss_pred             HHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHH
Q 009568          387 IKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLE  436 (532)
Q Consensus       387 v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~  436 (532)
                      ||..|..+|..++....       ++...++.++..|.+..++++....+
T Consensus       426 VRL~ai~aL~~Is~~l~-------i~eeql~~il~~L~D~s~dvRe~l~e  468 (823)
T KOG2259|consen  426 VRLKAIFALTMISVHLA-------IREEQLRQILESLEDRSVDVREALRE  468 (823)
T ss_pred             HHHHHHHHHHHHHHHhe-------ecHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            99999999999877531       12233555555555555555544333

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.13  E-value=2e-05  Score=62.37  Aligned_cols=115  Identities=15%  Similarity=0.102  Sum_probs=99.6

Q ss_pred             CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q 009568          117 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD  196 (532)
Q Consensus       117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~  196 (532)
                      +.+..||.-.....+.+.+.....-|.|++. +|-+-..+.+..++..++.-|..++..+.+.++..|+|+|.+.. ...
T Consensus        16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~-n~~   93 (173)
T KOG4646|consen   16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKT-NAK   93 (173)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChH-HHH
Confidence            4566777666655558999999999999999 78888899999999999999999999999999999999998765 567


Q ss_pred             HHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC
Q 009568          197 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  234 (532)
Q Consensus       197 ~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~  234 (532)
                      .+.+.++++.++..+ .++...+...++.++..|+.+.
T Consensus        94 ~I~ea~g~plii~~l-ssp~e~tv~sa~~~l~~l~~~~  130 (173)
T KOG4646|consen   94 FIREALGLPLIIFVL-SSPPEITVHSAALFLQLLEFGE  130 (173)
T ss_pred             HHHHhcCCceEEeec-CCChHHHHHHHHHHHHHhcCcc
Confidence            888999999999998 7777888889999999999875

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.13  E-value=9.9e-05  Score=74.52  Aligned_cols=265  Identities=17%  Similarity=0.177  Sum_probs=163.1

Q ss_pred             CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q 009568          117 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD  196 (532)
Q Consensus       117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~  196 (532)
                      ++...|.+.|++.+++.++.-++-.|+-...++...       .+...|-..|...+...-+.|..+++-+-..+.. .+
T Consensus       413 ~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~-------eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~-~e  484 (929)
T KOG2062|consen  413 GITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANE-------EIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTAN-QE  484 (929)
T ss_pred             cHHHHHHHHHHhccchhhhhhhhhhccchhcccccH-------HHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCc-HH
Confidence            356677777777666778887777766665544322       1235556666665565666666666655433221 11


Q ss_pred             HHHhcCChHHHHHHhhhhhhhHHHHHHHH--HhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 009568          197 LVLSQGALIPLLAQLNERAKLSMLRNATW--TLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG  274 (532)
Q Consensus       197 ~~~~~~~l~~L~~ll~~~~~~~~~~~a~~--~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~  274 (532)
                            ++.-++..-.......+.+-..-  +|....+.         ...=+.+-.++.+.|+-++.....++.---.+
T Consensus       485 ------aiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrq---------e~Ad~lI~el~~dkdpilR~~Gm~t~alAy~G  549 (929)
T KOG2062|consen  485 ------AIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQ---------EDADPLIKELLRDKDPILRYGGMYTLALAYVG  549 (929)
T ss_pred             ------HHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhh---------hhhHHHHHHHhcCCchhhhhhhHHHHHHHHhc
Confidence                  23334444433444555554332  23333332         23445677788888888888877766432222


Q ss_pred             ChhHHHHHHHhCchHHHHHh-hCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHH
Q 009568          275 TNDKIQAVIEAGVCPRLVEL-LGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI  353 (532)
Q Consensus       275 ~~~~~~~~~~~~~l~~L~~l-L~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L  353 (532)
                      ..       ..+++..|++. .++.+.+|+..|+-+||-++..+++         .++..+.+|..++++.||..++.+|
T Consensus       550 Tg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~---------~~~s~V~lLses~N~HVRyGaA~AL  613 (929)
T KOG2062|consen  550 TG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE---------QLPSTVSLLSESYNPHVRYGAAMAL  613 (929)
T ss_pred             cC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecChh---------hchHHHHHHhhhcChhhhhhHHHHH
Confidence            11       12567778887 5778999999999999999887663         3567888888887999999999999


Q ss_pred             HHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHH
Q 009568          354 SNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPR  429 (532)
Q Consensus       354 ~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~  429 (532)
                      +-.|+|+...-       .+..|-.++.+...-||+-|+.++.-+....++..+..  -.++.+.+...+.+++.+
T Consensus       614 GIaCAGtG~~e-------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pk--v~~frk~l~kvI~dKhEd  680 (929)
T KOG2062|consen  614 GIACAGTGLKE-------AINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPK--VNGFRKQLEKVINDKHED  680 (929)
T ss_pred             hhhhcCCCcHH-------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCch--HHHHHHHHHHHhhhhhhH
Confidence            99998643311       22334444555667799999999988876544333222  123444555555544443

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.11  E-value=8e-05  Score=79.13  Aligned_cols=268  Identities=17%  Similarity=0.161  Sum_probs=173.2

Q ss_pred             HHHHHhhhcC-CChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC---Chh
Q 009568           76 LPAMVAGVWS-DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASG---TSE  151 (532)
Q Consensus        76 l~~lv~~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~---~~~  151 (532)
                      ++.+..++++ ...+.+..|+..|..+...-.    ++..-..++|.++.++.++. .++|..|+..|+.+...   -+.
T Consensus       424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~----de~~LDRVlPY~v~l~~Ds~-a~Vra~Al~Tlt~~L~~Vr~~~~  498 (1431)
T KOG1240|consen  424 VSVLTSCIRALKTIQTKLAALELLQELSTYID----DEVKLDRVLPYFVHLLMDSE-ADVRATALETLTELLALVRDIPP  498 (1431)
T ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcc----hHHHHhhhHHHHHHHhcCch-HHHHHHHHHHHHHHHhhccCCCc
Confidence            3444444443 335677888888888865421    12222348999999999998 99999999999887652   122


Q ss_pred             hHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHH----------------------------HhcC
Q 009568          152 NTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLV----------------------------LSQG  202 (532)
Q Consensus       152 ~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~----------------------------~~~~  202 (532)
                      .-..+.-.-++|.|-.++.+ ....+|..-+..|+.+|.....+....                            +-. 
T Consensus       499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~-  577 (1431)
T KOG1240|consen  499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHH-  577 (1431)
T ss_pred             ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHH-
Confidence            22233344567888888877 445566655666666653211111000                            001 


Q ss_pred             ChHHHH-HHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHH
Q 009568          203 ALIPLL-AQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQA  281 (532)
Q Consensus       203 ~l~~L~-~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~  281 (532)
                      .+...+ .++ .++++-+++..+..+.-||.--  .......-+++.|..+|++.|+.++..-...|..++..-.   ..
T Consensus       578 ~V~~~v~sLl-sd~~~~Vkr~Lle~i~~LC~FF--Gk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG---~r  651 (1431)
T KOG1240|consen  578 TVEQMVSSLL-SDSPPIVKRALLESIIPLCVFF--GKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG---WR  651 (1431)
T ss_pred             HHHHHHHHHH-cCCchHHHHHHHHHHHHHHHHh--hhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe---ee
Confidence            122222 233 4445667777777777666432  1111224578899999999999999888877776653321   11


Q ss_pred             HHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 009568          282 VIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (532)
Q Consensus       282 ~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  358 (532)
                      -++..++|.|.+-|.++++.|...|++++..|+...--....+.  .+++.+..+|-++ +.-+|..++.+|..++.
T Consensus       652 s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~  725 (1431)
T KOG1240|consen  652 SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHP-NLWIRRAVLGIIAAIAR  725 (1431)
T ss_pred             eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCc-hHHHHHHHHHHHHHHHh
Confidence            23457889999999999999999999999999975442332333  4677788888999 99999999999988775

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.11  E-value=0.00029  Score=64.29  Aligned_cols=230  Identities=17%  Similarity=0.196  Sum_probs=153.3

Q ss_pred             HhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh-CCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHHh
Q 009568          124 EFLMREDYPQLQFEAAWALTNIASGTSENTKVVID-HGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDSPRCRDLVLS  200 (532)
Q Consensus       124 ~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~  200 (532)
                      ++++.-+ +-.+.-|+.|+.++.. .++.+..+.. ..+-..++.+++.  ....++-..+.+++-++.. +.+.+.+-.
T Consensus       156 kl~Q~i~-~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~-~~~aqdi~K  232 (432)
T COG5231         156 KLSQLID-FLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFS-KECAQDIDK  232 (432)
T ss_pred             HHHHHHH-HHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC-HHHHHHHHH
Confidence            3444444 5678889999999998 6777776654 3455677777766  5678888888888888644 334322221


Q ss_pred             -cCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCC--cccc-cchHHHHHHhhc--CCCHHHHHHHHHHHHHhccC
Q 009568          201 -QGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP--FDQV-RPALPALAQLVH--SNDEEVLTDACWALSYLSDG  274 (532)
Q Consensus       201 -~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~--~~~~-~~~l~~L~~lL~--~~d~~v~~~a~~~L~~l~~~  274 (532)
                       ...+.-+++++.......+.+-++..+.|++...|...  .... ..+.+..--++.  -.|++++.+.-..=..+..+
T Consensus       233 ~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~  312 (432)
T COG5231         233 MDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQN  312 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh
Confidence             23466677777667788999999999999998433221  1112 223333333332  23666554433322222111


Q ss_pred             Ch------------------------------hHHHHHHHh--CchHHHHHhhCCCCcc-chhhHHHHHHHhhcCCcchh
Q 009568          275 TN------------------------------DKIQAVIEA--GVCPRLVELLGHPSPS-VLIPALRTVGNIVTGDDFQT  321 (532)
Q Consensus       275 ~~------------------------------~~~~~~~~~--~~l~~L~~lL~~~~~~-v~~~al~~L~nl~~~~~~~~  321 (532)
                      ..                              .+...+.+.  .++..|.++++..++. ....||.-++.++...|+..
T Consensus       313 ~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~  392 (432)
T COG5231         313 TKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEIN  392 (432)
T ss_pred             hhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHH
Confidence            00                              111222221  4688889999887766 66778999999999999888


Q ss_pred             HHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHh
Q 009568          322 QCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT  357 (532)
Q Consensus       322 ~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~  357 (532)
                      ..+.+.|+=..++.+++|+ +++|+.+|..++-.+.
T Consensus       393 ~vl~Kyg~k~~im~L~nh~-d~~VkfeAl~a~q~~i  427 (432)
T COG5231         393 AVLSKYGVKEIIMNLINHD-DDDVKFEALQALQTCI  427 (432)
T ss_pred             HHHHHhhhHHHHHHHhcCC-CchhhHHHHHHHHHHH
Confidence            8888999999999999999 9999999999887664

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.09  E-value=2.8e-05  Score=71.45  Aligned_cols=187  Identities=17%  Similarity=0.240  Sum_probs=119.5

Q ss_pred             hCCCCccchhhHHHHHHHhhcCC--cchhHHHhhc--CchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHc
Q 009568          295 LGHPSPSVLIPALRTVGNIVTGD--DFQTQCIITY--GALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDA  370 (532)
Q Consensus       295 L~~~~~~v~~~al~~L~nl~~~~--~~~~~~~~~~--~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~  370 (532)
                      -.+.+|..+..++..|..++.+.  ......+...  .++..+...+.+. ...+.+.||.++..++......+...++.
T Consensus        16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~   94 (228)
T PF12348_consen   16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYADI   94 (228)
T ss_dssp             HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence            36678999999999999998877  2222223221  5667777788777 78899999999999987433335555443


Q ss_pred             CCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCC-HHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhh
Q 009568          371 GLVGPLVNLLQNAEFDIKKEAAWAISNATSGGT-HEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEK  449 (532)
Q Consensus       371 ~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~-~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~  449 (532)
                       ++|.|+..+.++...++..|..+|..++...+ ....       .+..+.....++++.++..++..+..++.......
T Consensus        95 -~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-------~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~  166 (228)
T PF12348_consen   95 -LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-------LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDS  166 (228)
T ss_dssp             -HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-------HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----
T ss_pred             -HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-------HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchH
Confidence             78999999999888999999999999998755 1111       15566778889999999999999999988765111


Q ss_pred             hccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009568          450 NMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLE  499 (532)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~  499 (532)
                      .      ...... .+  ....+.+..+..+.+++|++.|...+..|+..
T Consensus       167 ~------~l~~~~-~~--~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~  207 (228)
T PF12348_consen  167 S------VLQKSA-FL--KQLVKALVKLLSDADPEVREAARECLWALYSH  207 (228)
T ss_dssp             G------GG--HH-HH--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred             h------hhcccc-hH--HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence            0      011000 01  22357788889999999999999988887653

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=98.09  E-value=0.0043  Score=64.87  Aligned_cols=141  Identities=18%  Similarity=0.160  Sum_probs=111.2

Q ss_pred             cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (532)
Q Consensus        75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  154 (532)
                      .++.+++.+.+.|.+++...-..|......  .| ...+.   .++.+.+=+.+++ +.+|..|++.++.+-.  ++...
T Consensus        56 Lf~dViK~~~trd~ElKrL~ylYl~~yak~--~P-~~~lL---avNti~kDl~d~N-~~iR~~AlR~ls~l~~--~el~~  126 (757)
T COG5096          56 LFPDVIKNVATRDVELKRLLYLYLERYAKL--KP-ELALL---AVNTIQKDLQDPN-EEIRGFALRTLSLLRV--KELLG  126 (757)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHhcc--CH-HHHHH---HHHHHHhhccCCC-HHHHHHHHHHHHhcCh--HHHHH
Confidence            568888888888898888888888888775  23 22222   5788888889998 9999999999988765  33322


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCC
Q 009568          155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG  233 (532)
Q Consensus       155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~  233 (532)
                           .+++++.+++.++++.||..|+.++.++-.-++   +.+.+.|.+..+..++ .+.++.+.++|+.+|..+...
T Consensus       127 -----~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~-~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         127 -----NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELV-ADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             -----HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHh-hCCCchHHHHHHHHHHHhchh
Confidence                 356899999999999999999999999965443   3556667777666666 889999999999999988765

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.08  E-value=6.5e-06  Score=56.36  Aligned_cols=55  Identities=25%  Similarity=0.594  Sum_probs=48.1

Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009568          343 KSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNA  398 (532)
Q Consensus       343 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl  398 (532)
                      +.+|..|+|+|++++...++....... .+++.|+.+|.++++.||..|+|+|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~-~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLP-ELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHH-HHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            468999999999998888887777554 4899999999999889999999999875

...

>PF05536 Neurochondrin: Neurochondrin

Probab=98.06  E-value=0.00043  Score=71.24  Aligned_cols=235  Identities=18%  Similarity=0.164  Sum_probs=162.8

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch---hHHHHHhcCChHHHHHHhhhh------hhhHHHHHHHHHhhhccC
Q 009568          162 VPIFVKLLASPSDDVREQAVWALGNVAGDSPR---CRDLVLSQGALIPLLAQLNER------AKLSMLRNATWTLSNFCR  232 (532)
Q Consensus       162 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~---~~~~~~~~~~l~~L~~ll~~~------~~~~~~~~a~~~L~~L~~  232 (532)
                      +...+.+|+..+.+-+-.++..+.+++...+.   .++.+.+.=+...+-++|...      +....+.-++..|+.+|+
T Consensus         7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~   86 (543)
T PF05536_consen    7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR   86 (543)
T ss_pred             HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence            56677888887777788888888888865542   233455655567777777431      345677788899999999


Q ss_pred             CCCCCCcccccchHHHHHHhhcCCCH-HHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHH
Q 009568          233 GKPQPPFDQVRPALPALAQLVHSNDE-EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVG  311 (532)
Q Consensus       233 ~~~~~~~~~~~~~l~~L~~lL~~~d~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~  311 (532)
                      .+.......+.+.+|.|+.++...+. ++...++.+|..++.. ++-.+.+++.|.++.|...+.+ .+.....|+.++.
T Consensus        87 ~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~  164 (543)
T PF05536_consen   87 DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS-PEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLL  164 (543)
T ss_pred             ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-cHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHH
Confidence            76555555667889999999987776 9999999999999954 4455889999999999999987 5667888999999


Q ss_pred             HhhcCCcchhHH---HhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHH-HHHH----HHcCCHHHHHHHHhcC
Q 009568          312 NIVTGDDFQTQC---IITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ-IQAV----IDAGLVGPLVNLLQNA  383 (532)
Q Consensus       312 nl~~~~~~~~~~---~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~-~~~l----~~~~~i~~L~~ll~~~  383 (532)
                      +++.......-.   -.-..+++.+...+... ....+-++|..|+++....+.. ....    .-..+...+..++.+.
T Consensus       165 ~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~-~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr  243 (543)
T PF05536_consen  165 NLLSRLGQKSWAEDSQLLHSILPSLARDFSSF-HGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSR  243 (543)
T ss_pred             HHHHhcchhhhhhhHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcC
Confidence            988754421100   00114556677777665 6677888999999988754211 1111    1122455566667665


Q ss_pred             -chhHHHHHHHHHHHhh
Q 009568          384 -EFDIKKEAAWAISNAT  399 (532)
Q Consensus       384 -~~~v~~~a~~aL~nl~  399 (532)
                       .+.-|..+......+.
T Consensus       244 ~~~~~R~~al~Laa~Ll  260 (543)
T PF05536_consen  244 LTPSQRDPALNLAASLL  260 (543)
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence             4556666666555554

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=98.04  E-value=3.4e-05  Score=59.21  Aligned_cols=95  Identities=19%  Similarity=0.328  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcC
Q 009568          345 IKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV  424 (532)
Q Consensus       345 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~  424 (532)
                      .|+.+.++|+.++.+-+..+...++. ++++++..+.+++.+||..|+.+|.|++.....+...++-  .+++.|..++.
T Consensus         2 ~R~ggli~Laa~ai~l~~~~~~~l~~-Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~--~IF~~L~kl~~   78 (97)
T PF12755_consen    2 YRKGGLIGLAAVAIALGKDISKYLDE-ILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFN--EIFDALCKLSA   78 (97)
T ss_pred             chhHHHHHHHHHHHHchHhHHHHHHH-HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHc
Confidence            47788999999887666666666654 8999999999999999999999999998865555555443  48899999999


Q ss_pred             CCCHHHHHHHHHHHHHHHH
Q 009568          425 CPDPRIVTVCLEGLENILK  443 (532)
Q Consensus       425 ~~d~~v~~~al~~L~~l~~  443 (532)
                      ++|+.|+..+ +.|.++++
T Consensus        79 D~d~~Vr~~a-~~Ld~llk   96 (97)
T PF12755_consen   79 DPDENVRSAA-ELLDRLLK   96 (97)
T ss_pred             CCchhHHHHH-HHHHHHhc
Confidence            9999987654 77777664

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.04  E-value=8.4e-05  Score=68.25  Aligned_cols=187  Identities=18%  Similarity=0.128  Sum_probs=121.5

Q ss_pred             cCCCHHHHHHHHHHHHHhccCC--hhHHHHHHHh--CchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCc
Q 009568          254 HSNDEEVLTDACWALSYLSDGT--NDKIQAVIEA--GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGA  329 (532)
Q Consensus       254 ~~~d~~v~~~a~~~L~~l~~~~--~~~~~~~~~~--~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~  329 (532)
                      .+.+++.+..++..|..++.+.  ......+...  .++..+...+.+....+...|+.++..++...........+ .+
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~-~~   95 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYAD-IL   95 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHH-HH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHH-HH
Confidence            4568899999999999887655  2222222211  56677778888888889999999999999766555544433 67


Q ss_pred             hHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCC--HHHH
Q 009568          330 LPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGT--HEQI  407 (532)
Q Consensus       330 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~--~~~~  407 (532)
                      +|.|+..+.++ ...++..|..+|..++...+-. ..+    +++.+...+.+.++.+|..++..+..++....  ....
T Consensus        96 l~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~~~-~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l  169 (228)
T PF12348_consen   96 LPPLLKKLGDS-KKFIREAANNALDAIIESCSYS-PKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL  169 (228)
T ss_dssp             HHHHHHGGG----HHHHHHHHHHHHHHHTTS-H---HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred             HHHHHHHHccc-cHHHHHHHHHHHHHHHHHCCcH-HHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence            89999999988 8889999999999999864411 111    24667777888899999999999999987544  1111


Q ss_pred             H-HHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 009568          408 K-YLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEA  447 (532)
Q Consensus       408 ~-~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~  447 (532)
                      . ...-..+++.+..++.+++++|+..+-.++..+....+.
T Consensus       170 ~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~  210 (228)
T PF12348_consen  170 QKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE  210 (228)
T ss_dssp             --HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred             cccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence            1 100124788899999999999999999999998766544

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=97.96  E-value=0.004  Score=66.19  Aligned_cols=258  Identities=14%  Similarity=0.113  Sum_probs=156.7

Q ss_pred             CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhH
Q 009568          117 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCR  195 (532)
Q Consensus       117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~  195 (532)
                      +++..|...+++.+ ..++-.|+..++.++...|..   +. ..+|...+.++.. +++..-..++.+|+.++..+--.-
T Consensus       341 ~vie~Lls~l~d~d-t~VrWSaAKg~grvt~rlp~~---La-d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp  415 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTD-TVVRWSAAKGLGRVTSRLPPE---LA-DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP  415 (1133)
T ss_pred             HHHHHHHHhccCCc-chhhHHHHHHHHHHHccCcHH---HH-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence            57788888888888 799999999999999866522   11 1345666665554 345566688889999986542221


Q ss_pred             HHHHhcCChHHHHHHhhh-------hhhhHHHHHHHHHhhhccCCCCCC-CcccccchHHH-HHHhhcCCCHHHHHHHHH
Q 009568          196 DLVLSQGALIPLLAQLNE-------RAKLSMLRNATWTLSNFCRGKPQP-PFDQVRPALPA-LAQLVHSNDEEVLTDACW  266 (532)
Q Consensus       196 ~~~~~~~~l~~L~~ll~~-------~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~-L~~lL~~~d~~v~~~a~~  266 (532)
                      ..+.  .+++.++.-+..       +....++..+|++++.+++..... .......+.+. |...+-+.+-.++..|..
T Consensus       416 s~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsA  493 (1133)
T KOG1943|consen  416 SLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASA  493 (1133)
T ss_pred             HHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence            1221  245556655532       224578999999999999875222 11122233333 223344566677888888


Q ss_pred             HHHHhccCChhHHHHHHHhCchHHHHHhhCC---CCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCch
Q 009568          267 ALSYLSDGTNDKIQAVIEAGVCPRLVELLGH---PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKK  343 (532)
Q Consensus       267 ~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~---~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~  343 (532)
                      ++.......          |-+|.=+.++.+   -....+..+-..+..-....+..+..+++.    .+.+-+.|- +.
T Consensus       494 AlqE~VGR~----------~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~----L~t~Kv~HW-d~  558 (1133)
T KOG1943|consen  494 ALQENVGRQ----------GNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNH----LLTKKVCHW-DV  558 (1133)
T ss_pred             HHHHHhccC----------CCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHH----HHhcccccc-cH
Confidence            886654321          112222222222   222334444444544444444444444431    222236667 89


Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009568          344 SIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS  400 (532)
Q Consensus       344 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~  400 (532)
                      .+|..++|+|.+++...++.    .....+|.++....+.+...|.-+..+.+.++.
T Consensus       559 ~irelaa~aL~~Ls~~~pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~  611 (1133)
T KOG1943|consen  559 KIRELAAYALHKLSLTEPKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG  611 (1133)
T ss_pred             HHHHHHHHHHHHHHHhhHHh----hcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence            99999999999998765543    334578888888888888888766666666654

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.94  E-value=0.00076  Score=61.68  Aligned_cols=239  Identities=15%  Similarity=0.157  Sum_probs=146.8

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCC--CCccchhhHHHHHHHhhcCCcchhHHH
Q 009568          247 PALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH--PSPSVLIPALRTVGNIVTGDDFQTQCI  324 (532)
Q Consensus       247 ~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~al~~L~nl~~~~~~~~~~~  324 (532)
                      ..|-++++.-++-.+.-|..++.++......+.....+...-.+++.+++.  +...++...+.++..++.... ..+.+
T Consensus       152 eyLgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~-~aqdi  230 (432)
T COG5231         152 EYLGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKE-CAQDI  230 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHH-HHHHH
Confidence            334445555566677778888888876544443333343444567777765  456788999999998886433 33222


Q ss_pred             hh-cCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHH-HcCCHHHHHHHHhcC--chhHHHHHHHHHHHhh
Q 009568          325 IT-YGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQAVI-DAGLVGPLVNLLQNA--EFDIKKEAAWAISNAT  399 (532)
Q Consensus       325 ~~-~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~-~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~  399 (532)
                      -+ ...+.-++.+.+......|-+-+|.++.|++. .....+.... ..++.+..--+...+  |.+++...-..=..+.
T Consensus       231 ~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~  310 (432)
T COG5231         231 DKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLV  310 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence            11 13556677777655466788899999999997 3334444444 334555544444433  4454433222211111


Q ss_pred             c---------------------CCC--------HHHHHHHHHc--CChHHHHhhcCCCCHH-HHHHHHHHHHHHHHhhhh
Q 009568          400 S---------------------GGT--------HEQIKYLVRE--GCIKPLCDLFVCPDPR-IVTVCLEGLENILKVGEA  447 (532)
Q Consensus       400 ~---------------------~~~--------~~~~~~l~~~--~~l~~L~~lL~~~d~~-v~~~al~~L~~l~~~~~~  447 (532)
                      .                     ..+        ......+.+.  .++..|..+++..++. ...+|+.-+..+++..+.
T Consensus       311 ~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE  390 (432)
T COG5231         311 QNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPE  390 (432)
T ss_pred             hhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCch
Confidence            0                     000        1223333332  3577888888877665 556666667777665443


Q ss_pred             hhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009568          448 EKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLE  499 (532)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~  499 (532)
                                   ....+...|+-+.|.+|.+|++++|+-.|...+..+.+.
T Consensus       391 -------------~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~~  429 (432)
T COG5231         391 -------------INAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCISS  429 (432)
T ss_pred             -------------HHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHhh
Confidence                         356788899999999999999999999999888876543

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=97.94  E-value=0.0005  Score=67.69  Aligned_cols=278  Identities=13%  Similarity=0.076  Sum_probs=132.2

Q ss_pred             ChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHH
Q 009568           87 DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV  166 (532)
Q Consensus        87 ~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~  166 (532)
                      -..+++++++.+..+....   .....++ ..+..|-.+|+++. ...|+.|.++|..++...|+..   ..++  +-+-
T Consensus       277 ~emV~lE~Ar~v~~~~~~n---v~~~~~~-~~vs~L~~fL~s~r-v~~rFsA~Riln~lam~~P~kv---~vcN--~evE  346 (898)
T COG5240         277 FEMVFLEAARAVCALSEEN---VGSQFVD-QTVSSLRTFLKSTR-VVLRFSAMRILNQLAMKYPQKV---SVCN--KEVE  346 (898)
T ss_pred             chhhhHHHHHHHHHHHHhc---cCHHHHH-HHHHHHHHHHhcch-HHHHHHHHHHHHHHHhhCCcee---eecC--hhHH
Confidence            3455556666555554321   0111111 13445555555555 5666666666666665333321   1111  2233


Q ss_pred             HhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchH
Q 009568          167 KLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPAL  246 (532)
Q Consensus       167 ~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l  246 (532)
                      .++.+.+..+...|+..|..-  +..+.-+.+     +..+...+ .+.+......++.++..||-.-|....    ..+
T Consensus       347 sLIsd~Nr~IstyAITtLLKT--Gt~e~idrL-----v~~I~sfv-hD~SD~FKiI~ida~rsLsl~Fp~k~~----s~l  414 (898)
T COG5240         347 SLISDENRTISTYAITTLLKT--GTEETIDRL-----VNLIPSFV-HDMSDGFKIIAIDALRSLSLLFPSKKL----SYL  414 (898)
T ss_pred             HHhhcccccchHHHHHHHHHc--CchhhHHHH-----HHHHHHHH-HhhccCceEEeHHHHHHHHhhCcHHHH----HHH
Confidence            344444444433333333322  111111111     11122222 222233333334444444433332222    233


Q ss_pred             HHHHHhhc-CCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHh
Q 009568          247 PALAQLVH-SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCII  325 (532)
Q Consensus       247 ~~L~~lL~-~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~  325 (532)
                      ..|...|. .+.-+...++..++..+....++...     .++..|..++.+..  .-.-++++|+-|....+....   
T Consensus       415 ~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skE-----raLe~LC~fIEDce--y~~I~vrIL~iLG~EgP~a~~---  484 (898)
T COG5240         415 DFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKE-----RALEVLCTFIEDCE--YHQITVRILGILGREGPRAKT---  484 (898)
T ss_pred             HHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHH-----HHHHHHHHHHhhcc--hhHHHHHHHHHhcccCCCCCC---
Confidence            34443332 33556667777777776665544333     34455666655432  223344555555443331110   


Q ss_pred             hcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009568          326 TYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS  400 (532)
Q Consensus       326 ~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~  400 (532)
                      ....+..+..-+--. +.-+|..|..+|+.++..-.+   ......+...|-+++.+.|.++|..|..+|.++-.
T Consensus       485 P~~yvrhIyNR~iLE-N~ivRsaAv~aLskf~ln~~d---~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~  555 (898)
T COG5240         485 PGKYVRHIYNRLILE-NNIVRSAAVQALSKFALNISD---VVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRL  555 (898)
T ss_pred             cchHHHHHHHHHHHh-hhHHHHHHHHHHHHhccCccc---cccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence            011233343333334 667999999999988763222   11122245567788899999999999999999864

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=97.92  E-value=0.0005  Score=67.72  Aligned_cols=286  Identities=14%  Similarity=0.070  Sum_probs=162.4

Q ss_pred             cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q 009568          118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL  197 (532)
Q Consensus       118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~  197 (532)
                      ..|.|-..|++.- ..++.+++++++.++..+  .....++ ..+..|-.+|.++....|-.|+++|..++...|+.-. 
T Consensus       265 ~rpfL~~wls~k~-emV~lE~Ar~v~~~~~~n--v~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~-  339 (898)
T COG5240         265 LRPFLNSWLSDKF-EMVFLEAARAVCALSEEN--VGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVS-  339 (898)
T ss_pred             HHHHHHHHhcCcc-hhhhHHHHHHHHHHHHhc--cCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceee-
Confidence            4455666666655 689999999999988743  1122222 3467888899999999999999999999977664211 


Q ss_pred             HHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhc---CCCHHHHHHHHHHHHHhccC
Q 009568          198 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH---SNDEEVLTDACWALSYLSDG  274 (532)
Q Consensus       198 ~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~---~~d~~v~~~a~~~L~~l~~~  274 (532)
                        .  +-+.+-.++ .+.+..+-..|+.   .|........   +..++..+..+++   ++-.-+..++++.|+.+   
T Consensus       340 --v--cN~evEsLI-sd~Nr~IstyAIT---tLLKTGt~e~---idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~---  405 (898)
T COG5240         340 --V--CNKEVESLI-SDENRTISTYAIT---TLLKTGTEET---IDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLL---  405 (898)
T ss_pred             --e--cChhHHHHh-hcccccchHHHHH---HHHHcCchhh---HHHHHHHHHHHHHhhccCceEEeHHHHHHHHhh---
Confidence              1  122233333 4444444433333   3333221111   2223333333333   22233445555555443   


Q ss_pred             ChhHHHHHHHhCchHHHHHhh-CCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHH
Q 009568          275 TNDKIQAVIEAGVCPRLVELL-GHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI  353 (532)
Q Consensus       275 ~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L  353 (532)
                      .+....     ..+..|...| +.+..+....++.+|..+....++..+     .++..|...+.+.   +.-+-+..+|
T Consensus       406 Fp~k~~-----s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skE-----raLe~LC~fIEDc---ey~~I~vrIL  472 (898)
T COG5240         406 FPSKKL-----SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKE-----RALEVLCTFIEDC---EYHQITVRIL  472 (898)
T ss_pred             CcHHHH-----HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHH-----HHHHHHHHHHhhc---chhHHHHHHH
Confidence            333322     2233444443 345667788888888888877664443     3455677777655   2333444555


Q ss_pred             HHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHH
Q 009568          354 SNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTV  433 (532)
Q Consensus       354 ~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~  433 (532)
                      +-+....|....+   ...+..+..-+--.+.-+|..|..||..++...+....    ...+...|-.++.+.|.+++..
T Consensus       473 ~iLG~EgP~a~~P---~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~----~~sv~~~lkRclnD~DdeVRdr  545 (898)
T COG5240         473 GILGREGPRAKTP---GKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVS----PQSVENALKRCLNDQDDEVRDR  545 (898)
T ss_pred             HHhcccCCCCCCc---chHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccccc----HHHHHHHHHHHhhcccHHHHHH
Confidence            5554321110000   00122333333334667999999999988876543222    2245667888999999999999


Q ss_pred             HHHHHHHHH
Q 009568          434 CLEGLENIL  442 (532)
Q Consensus       434 al~~L~~l~  442 (532)
                      |--++.++=
T Consensus       546 Asf~l~~~~  554 (898)
T COG5240         546 ASFLLRNMR  554 (898)
T ss_pred             HHHHHHhhh
Confidence            988888774

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.89  E-value=3.6e-05  Score=58.67  Aligned_cols=86  Identities=34%  Similarity=0.495  Sum_probs=70.1

Q ss_pred             HHHHHhhh-cCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568           76 LPAMVAGV-WSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (532)
Q Consensus        76 l~~lv~~L-~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  154 (532)
                      |+.|++.| +++++.++..++..|.++-.            ..++|.|++++++++ +.++..|+++|+.+..       
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~------------~~~~~~L~~~l~d~~-~~vr~~a~~aL~~i~~-------   60 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGD------------PEAIPALIELLKDED-PMVRRAAARALGRIGD-------   60 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTH------------HHHHHHHHHHHTSSS-HHHHHHHHHHHHCCHH-------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCC------------HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-------
Confidence            57888988 78899999999999985422            136999999998877 9999999999998842       


Q ss_pred             HHHhCCChHHHHHhhCC-CCHHHHHHHHHHHH
Q 009568          155 VVIDHGAVPIFVKLLAS-PSDDVREQAVWALG  185 (532)
Q Consensus       155 ~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~  185 (532)
                          ..+++.|.+++.+ .+..++..|+++|+
T Consensus        61 ----~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   61 ----PEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             ----HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence                2368999998877 45677999999885

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.85  E-value=3.6e-05  Score=58.68  Aligned_cols=87  Identities=29%  Similarity=0.438  Sum_probs=69.2

Q ss_pred             HHHHHHhh-cCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q 009568          119 VPRFVEFL-MREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL  197 (532)
Q Consensus       119 i~~Lv~lL-~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~  197 (532)
                      ||.|++.| ++++ +.+|..|+++|+.+..  +         .+++.|+.+++++++.++..++++|+.+-         
T Consensus         1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPD-PQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG---------   59 (88)
T ss_dssp             HHHHHHHHHTSSS-HHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred             CHHHHHHHhcCCC-HHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence            68899999 5555 9999999999995532  2         34799999999999999999999999882         


Q ss_pred             HHhcCChHHHHHHhhhhhhhHHHHHHHHHhh
Q 009568          198 VLSQGALIPLLAQLNERAKLSMLRNATWTLS  228 (532)
Q Consensus       198 ~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~  228 (532)
                        ....++.|..++.++.+..++..++++|+
T Consensus        60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 --DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence              12268889998866666777888888874

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.81  E-value=0.033  Score=58.54  Aligned_cols=169  Identities=17%  Similarity=0.189  Sum_probs=125.1

Q ss_pred             hcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCCh
Q 009568           83 VWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAV  162 (532)
Q Consensus        83 L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i  162 (532)
                      +.+++...+..|++.+...+... ++ .     ..+.|-+++.+.+.+ .+++.-.-.-|...+...++..-.     ++
T Consensus        28 l~s~n~~~kidAmK~iIa~M~~G-~d-m-----ssLf~dViK~~~trd-~ElKrL~ylYl~~yak~~P~~~lL-----av   94 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMSLG-ED-M-----SSLFPDVIKNVATRD-VELKRLLYLYLERYAKLKPELALL-----AV   94 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHhcC-CC-h-----HHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhccCHHHHHH-----HH
Confidence            55666777888886655444432 22 1     126788888888766 899999888888999877744322     36


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccc
Q 009568          163 PIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQV  242 (532)
Q Consensus       163 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~  242 (532)
                      +.+.+=+.++++.+|..|+++++.+ ... .    + -..+++++.+++ .++++.+++.|+.++..+-+-+  ......
T Consensus        95 Nti~kDl~d~N~~iR~~AlR~ls~l-~~~-e----l-~~~~~~~ik~~l-~d~~ayVRk~Aalav~kly~ld--~~l~~~  164 (757)
T COG5096          95 NTIQKDLQDPNEEIRGFALRTLSLL-RVK-E----L-LGNIIDPIKKLL-TDPHAYVRKTAALAVAKLYRLD--KDLYHE  164 (757)
T ss_pred             HHHHhhccCCCHHHHHHHHHHHHhc-ChH-H----H-HHHHHHHHHHHc-cCCcHHHHHHHHHHHHHHHhcC--Hhhhhc
Confidence            8888889999999999999999987 221 1    1 122578888888 8889999999999999998654  222233


Q ss_pred             cchHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 009568          243 RPALPALAQLVHSNDEEVLTDACWALSYLSDG  274 (532)
Q Consensus       243 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~  274 (532)
                      .|.+..+..++.++||.+...|+.++..+...
T Consensus       165 ~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         165 LGLIDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             ccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence            45677778888899999999999999887644

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.80  E-value=0.0072  Score=58.01  Aligned_cols=240  Identities=13%  Similarity=0.133  Sum_probs=161.8

Q ss_pred             HHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC---------hhhHHHHHhCCChHH
Q 009568           94 ATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGT---------SENTKVVIDHGAVPI  164 (532)
Q Consensus        94 a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~---------~~~~~~i~~~g~i~~  164 (532)
                      .++.+.-++..  +.-...+++.++++.|+.+|.+.+ .++....+..|..++..+         ..-.+.+++.++++.
T Consensus       104 ~IQ~mhvlAt~--PdLYp~lveln~V~slL~LLgHeN-tDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaL  180 (536)
T KOG2734|consen  104 IIQEMHVLATM--PDLYPILVELNAVQSLLELLGHEN-TDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLAL  180 (536)
T ss_pred             HHHHHHhhhcC--hHHHHHHHHhccHHHHHHHhcCCC-chhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHH
Confidence            44555555543  333456788999999999999998 899999999999887633         234567788899999


Q ss_pred             HHHhhCCCCHHH------HHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhh-hhhhHHHHHHHHHhhhccCCCC-C
Q 009568          165 FVKLLASPSDDV------REQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE-RAKLSMLRNATWTLSNFCRGKP-Q  236 (532)
Q Consensus       165 L~~lL~~~~~~v------~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~~~~~a~~~L~~L~~~~~-~  236 (532)
                      |++-+..-++.+      ...+...+-|+....+.+...+.+.|.+.-|+.-+.. ..-......+..+++-+..+.. .
T Consensus       181 LvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~  260 (536)
T KOG2734|consen  181 LVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDEN  260 (536)
T ss_pred             HHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchh
Confidence            999886533333      3456677888888888777888888877777775432 2334456677777777776652 2


Q ss_pred             CCcccccchHHHHHHhhc----CC-----CHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHH
Q 009568          237 PPFDQVRPALPALAQLVH----SN-----DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPAL  307 (532)
Q Consensus       237 ~~~~~~~~~l~~L~~lL~----~~-----d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al  307 (532)
                      ......-.++..+++-+.    ++     ..+..++...+|+.+..... ....++....+....-+++. ....+..++
T Consensus       261 ~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~-nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~Sal  338 (536)
T KOG2734|consen  261 RKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPA-NRERFLKGEGLQLMNLMLRE-KKVSRGSAL  338 (536)
T ss_pred             hhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChh-hhhhhhccccHHHHHHHHHH-HHHhhhhHH
Confidence            222222345555554442    11     24567778888887765544 34667776777766656655 456678899


Q ss_pred             HHHHHhhcCCc--chhHHHhhcCchHHHHHHhc
Q 009568          308 RTVGNIVTGDD--FQTQCIITYGALPYLLGLLT  338 (532)
Q Consensus       308 ~~L~nl~~~~~--~~~~~~~~~~~l~~L~~lL~  338 (532)
                      ++|-.+..+.+  ..+..+++..++..+..++.
T Consensus       339 kvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FM  371 (536)
T KOG2734|consen  339 KVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFM  371 (536)
T ss_pred             HHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence            99999998877  45566777777777666654

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.78  E-value=0.014  Score=61.66  Aligned_cols=339  Identities=16%  Similarity=0.136  Sum_probs=191.9

Q ss_pred             HHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhc------CC-CCHHHHHHHHHHHHHHhcC--ChhhHHHHHhCCChH
Q 009568           93 EATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLM------RE-DYPQLQFEAAWALTNIASG--TSENTKVVIDHGAVP  163 (532)
Q Consensus        93 ~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~------~~-~~~~~~~~a~~~L~~l~~~--~~~~~~~i~~~g~i~  163 (532)
                      .|...+..+.++.+...     -.++++.+++.|.      .+ +++.-+..|+++++++++-  ...--+..++.=+++
T Consensus       391 Aa~~~l~~~~~KR~ke~-----l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~  465 (1010)
T KOG1991|consen  391 AALDFLTTLVSKRGKET-----LPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVN  465 (1010)
T ss_pred             HHHHHHHHHHHhcchhh-----hhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHH
Confidence            44555555554321111     1346777777776      21 2367788888999888851  111111222333456


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCC---Ccc
Q 009568          164 IFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP---PFD  240 (532)
Q Consensus       164 ~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~---~~~  240 (532)
                      .+...++++.--+|..|+|.++.++...  +.+...-..++....+.|..+.+..++..|+.+|..+..+.+..   -..
T Consensus       466 hVfP~f~s~~g~Lrarac~vl~~~~~~d--f~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~  543 (1010)
T KOG1991|consen  466 HVFPEFQSPYGYLRARACWVLSQFSSID--FKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSA  543 (1010)
T ss_pred             HhhHhhcCchhHHHHHHHHHHHHHHhcc--CCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhh
Confidence            6666778888899999999999998432  22222223356677777755778889999999999988876332   223


Q ss_pred             cccchHHHHHHhhcCCCHHHHHHHHHHH-HHhccCChhHHHHHHHhCchHHHHHhhCC---CC---ccchhhHHHHHHHh
Q 009568          241 QVRPALPALAQLVHSNDEEVLTDACWAL-SYLSDGTNDKIQAVIEAGVCPRLVELLGH---PS---PSVLIPALRTVGNI  313 (532)
Q Consensus       241 ~~~~~l~~L~~lL~~~d~~v~~~a~~~L-~~l~~~~~~~~~~~~~~~~l~~L~~lL~~---~~---~~v~~~al~~L~nl  313 (532)
                      .+.+.+..|+++.+..+.+....++..+ +..+..-......+.+ .+...+.+++..   .+   ..-...|..+|..+
T Consensus       544 hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti  622 (1010)
T KOG1991|consen  544 HVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGILRTI  622 (1010)
T ss_pred             hhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHHHHHH
Confidence            3455566666676665555555444433 2333221111111111 344555556653   12   22233444444443


Q ss_pred             h---cCCcchh--HHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHH
Q 009568          314 V---TGDDFQT--QCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIK  388 (532)
Q Consensus       314 ~---~~~~~~~--~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  388 (532)
                      .   ..-+...  -.-++..++|.+..+|++. -.++-.+++..+.+++...++.--.+.  ++++.+.+.+.....+.-
T Consensus       623 ~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~-i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~dyf  699 (1010)
T KOG1991|consen  623 STILLSLENHPEVLKQLEPIVLPVIGFILKND-ITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGIDYF  699 (1010)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhHHHH
Confidence            3   2222111  1223446778888888877 778889999999888765433221222  367788888887777888


Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHH-HcCChHHHHhhcCC---CCHHHHHHHHHHHHHHHH
Q 009568          389 KEAAWAISNATSGGTHEQIKYLV-REGCIKPLCDLFVC---PDPRIVTVCLEGLENILK  443 (532)
Q Consensus       389 ~~a~~aL~nl~~~~~~~~~~~l~-~~~~l~~L~~lL~~---~d~~v~~~al~~L~~l~~  443 (532)
                      ....-+|.|++..+.+.....-. -.-+...+..++.+   .|++. +.|.+.+..++-
T Consensus       700 ~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~-~~a~kLle~iiL  757 (1010)
T KOG1991|consen  700 TDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDC-ESACKLLEVIIL  757 (1010)
T ss_pred             HHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHHH-HHHHHHHHHHHH
Confidence            89999999999887654322210 01123333344444   23333 345555555544

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.73  E-value=2.8e-05  Score=53.18  Aligned_cols=55  Identities=27%  Similarity=0.402  Sum_probs=46.3

Q ss_pred             ccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHH
Q 009568          300 PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNI  356 (532)
Q Consensus       300 ~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl  356 (532)
                      |.++..|+++||+++...+...... ...+++.|..+|.++ ++.||..|+|+|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~-~~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPY-LPELLPALIPLLQDD-DDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHH-HHHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHH-HHHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence            3578999999999988777665553 347899999999988 889999999999976

...

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.66  E-value=0.0042  Score=59.55  Aligned_cols=223  Identities=13%  Similarity=0.124  Sum_probs=159.4

Q ss_pred             hhccHHHHHhhhcCCChHHHHHHHHHHHHHhcCC----CCC----chhHhhhCCcHHHHHHhhcCCC-----CHHHHHHH
Q 009568           72 KLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIE----RSP----PIEEVIQSGVVPRFVEFLMRED-----YPQLQFEA  138 (532)
Q Consensus        72 ~~~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~----~~~----~~~~~i~~g~i~~Lv~lL~~~~-----~~~~~~~a  138 (532)
                      .+.+++.++++|..++.++....+..+..+....    ...    -++.+++.++++.|++.+..-+     ..+-...+
T Consensus       123 eln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~  202 (536)
T KOG2734|consen  123 ELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNT  202 (536)
T ss_pred             HhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHH
Confidence            3468899999999999999999999888886532    111    2677889999999999887433     12344566


Q ss_pred             HHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhh----
Q 009568          139 AWALTNIASGTSENTKVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN----  212 (532)
Q Consensus       139 ~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~----  212 (532)
                      +.++-|+..-.++.+..+++.|.+..|+.-+..  +-..-...|..+|.-+..++...+...-..+++..+++-+.    
T Consensus       203 L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~  282 (536)
T KOG2734|consen  203 LAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKR  282 (536)
T ss_pred             HHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhc
Confidence            778889888889999999999999988885543  34556677888888887777767777777888888888774    


Q ss_pred             h----hhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh--hHHHHHHHhC
Q 009568          213 E----RAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN--DKIQAVIEAG  286 (532)
Q Consensus       213 ~----~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~  286 (532)
                      +    ....+...+...+|+.+.....+........++..+.-+++. ....+..++..|-+...+++  ..+..+++..
T Consensus       283 ~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~l  361 (536)
T KOG2734|consen  283 HDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEIL  361 (536)
T ss_pred             cCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            1    124567788888888777765444444445555555444444 45567778888888877665  5666677766


Q ss_pred             chHHHHHhh
Q 009568          287 VCPRLVELL  295 (532)
Q Consensus       287 ~l~~L~~lL  295 (532)
                      .+..++.+.
T Consensus       362 GLrtiF~~F  370 (536)
T KOG2734|consen  362 GLRTIFPLF  370 (536)
T ss_pred             hHHHHHHHH
Confidence            666665554

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=97.65  E-value=0.00027  Score=68.02  Aligned_cols=299  Identities=16%  Similarity=0.133  Sum_probs=157.9

Q ss_pred             HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh-----CCCchhHHHHHhcCChH--
Q 009568          133 QLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVA-----GDSPRCRDLVLSQGALI--  205 (532)
Q Consensus       133 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~-----~~~~~~~~~~~~~~~l~--  205 (532)
                      .++.++..+|..++..-.-.+..+++  ....+...+....+.++..+..++..+-     .+.|...+.-...+.+-  
T Consensus       270 ~~rle~~qvl~~~a~~~~~~~~~~~~--l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~  347 (728)
T KOG4535|consen  270 PMRLEALQVLTLLARYFSMTQAYLME--LGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTM  347 (728)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHH
Confidence            57788888888887633322333332  2344444556678899999988887763     22222111111222111  


Q ss_pred             ----HHHHHhhhhhhhHHHHHHHHHhhhccCCC-CCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHH
Q 009568          206 ----PLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQ  280 (532)
Q Consensus       206 ----~L~~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~  280 (532)
                          +.-....++..+......|-+++++.... ..-+.......+-.+..+=.+.+.-+...|++++.-+.-.+.-...
T Consensus       348 ~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d  427 (728)
T KOG4535|consen  348 MLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQD  427 (728)
T ss_pred             HccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhh
Confidence                11122223445667788888888887653 1111111111122222222233444777788877766655444444


Q ss_pred             HHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhc----CCcc---hhHHHhhcCchHHHHHHh--cCCCchhHHHHHHH
Q 009568          281 AVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT----GDDF---QTQCIITYGALPYLLGLL--THSHKKSIKKEACW  351 (532)
Q Consensus       281 ~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~----~~~~---~~~~~~~~~~l~~L~~lL--~~~~~~~v~~~a~~  351 (532)
                      ...-......+...+.+..-..+..+.|++|||+.    +.+.   ....+.. -.+..+...-  .+..+.+|+..|..
T Consensus       428 ~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~dkV~~navr  506 (728)
T KOG4535|consen  428 VIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKDKVKSNAVR  506 (728)
T ss_pred             HHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhhHHHH
Confidence            44444666677777777777889999999999974    2221   2222221 1122222222  12225689999999


Q ss_pred             HHHHHhcCCHHHHHHHHHcC-------CHHHHHH-HHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhc
Q 009568          352 TISNITAGNRDQIQAVIDAG-------LVGPLVN-LLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLF  423 (532)
Q Consensus       352 ~L~nl~~~~~~~~~~l~~~~-------~i~~L~~-ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL  423 (532)
                      +|+|+..-    .+.+.+.+       -+..+.. ..-....+||-+||++++|+..+..-.....=+...+.+.|+.++
T Consensus       507 aLgnllQv----lq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv  582 (728)
T KOG4535|consen  507 ALGNLLQF----LQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLV  582 (728)
T ss_pred             HHhhHHHH----HHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHH
Confidence            99998642    22222221       1112221 122246789999999999998864211100001112456666666


Q ss_pred             CC-CCHHHHHHHHHHH
Q 009568          424 VC-PDPRIVTVCLEGL  438 (532)
Q Consensus       424 ~~-~d~~v~~~al~~L  438 (532)
                      .+ .+-+|+..|..+|
T Consensus       583 ~~~~NFKVRi~AA~aL  598 (728)
T KOG4535|consen  583 TSCKNFKVRIRAAAAL  598 (728)
T ss_pred             HHhccceEeehhhhhh
Confidence            43 4445555544444

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.63  E-value=0.01  Score=53.20  Aligned_cols=244  Identities=19%  Similarity=0.265  Sum_probs=144.9

Q ss_pred             CCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHH
Q 009568           85 SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPI  164 (532)
Q Consensus        85 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~  164 (532)
                      +....-++.|+..|+++....            .+..+.+...+++ ..++.+.+.+|+....           ..+++.
T Consensus        16 s~~l~~r~rALf~Lr~l~~~~------------~i~~i~ka~~d~s-~llkhe~ay~LgQ~~~-----------~~Av~~   71 (289)
T KOG0567|consen   16 SQPLQNRFRALFNLRNLLGPA------------AIKAITKAFIDDS-ALLKHELAYVLGQMQD-----------EDAVPV   71 (289)
T ss_pred             cHHHHHHHHHHHhhhccCChH------------HHHHHHHhcccch-hhhccchhhhhhhhcc-----------chhhHH
Confidence            334456777888888876531            2555555555554 5677777778777665           245788


Q ss_pred             HHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC--------
Q 009568          165 FVKLLAS--PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK--------  234 (532)
Q Consensus       165 L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~--------  234 (532)
                      |+..|..  ..+.+|..|..+|+.+. +. .         .++.+-+.. +++-.++...+..++..+-...        
T Consensus        72 l~~vl~desq~pmvRhEAaealga~~-~~-~---------~~~~l~k~~-~dp~~~v~ETc~lAi~rle~~~~~~~~~~~  139 (289)
T KOG0567|consen   72 LVEVLLDESQEPMVRHEAAEALGAIG-DP-E---------SLEILTKYI-KDPCKEVRETCELAIKRLEWKDIIDKIANS  139 (289)
T ss_pred             HHHHhcccccchHHHHHHHHHHHhhc-ch-h---------hHHHHHHHh-cCCccccchHHHHHHHHHHHhhcccccccc
Confidence            8877655  55778888888888874 22 1         133333333 4444444444444444332211        


Q ss_pred             -------CCCCcccccchHHHHHHhh-cCCCHHH-HHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhh
Q 009568          235 -------PQPPFDQVRPALPALAQLV-HSNDEEV-LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIP  305 (532)
Q Consensus       235 -------~~~~~~~~~~~l~~L~~lL-~~~d~~v-~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~  305 (532)
                             |.++  ....-+.-+-..| ..+.+.. +..+...|.|+.  .++         .+..|..-+..++.-++..
T Consensus       140 ~p~~SvdPa~p--~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g--~Ee---------aI~al~~~l~~~SalfrhE  206 (289)
T KOG0567|consen  140 SPYISVDPAPP--ANLSSVHELRAELLDETKPLFERYRAMFYLRNIG--TEE---------AINALIDGLADDSALFRHE  206 (289)
T ss_pred             CccccCCCCCc--cccccHHHHHHHHHhcchhHHHHHhhhhHhhccC--cHH---------HHHHHHHhcccchHHHHHH
Confidence                   1111  1122233333333 3333333 445555555543  222         2444555566677778999


Q ss_pred             HHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcC-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCc
Q 009568          306 ALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH-SHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAE  384 (532)
Q Consensus       306 al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~  384 (532)
                      +..++|.|-+.           -.+|.|.+.|.. .+.+.||.+|+.+|+.++.  ++         .++.|...+.+.+
T Consensus       207 vAfVfGQl~s~-----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--e~---------~~~vL~e~~~D~~  264 (289)
T KOG0567|consen  207 VAFVFGQLQSP-----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--ED---------CVEVLKEYLGDEE  264 (289)
T ss_pred             HHHHHhhccch-----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--HH---------HHHHHHHHcCCcH
Confidence            99999987642           346677777743 3378999999999999974  44         3456777787777


Q ss_pred             hhHHHHHHHHHHHhh
Q 009568          385 FDIKKEAAWAISNAT  399 (532)
Q Consensus       385 ~~v~~~a~~aL~nl~  399 (532)
                      +-|+..+..+|.-+-
T Consensus       265 ~vv~esc~valdm~e  279 (289)
T KOG0567|consen  265 RVVRESCEVALDMLE  279 (289)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            778887777775543

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=97.60  E-value=0.00025  Score=68.26  Aligned_cols=309  Identities=17%  Similarity=0.185  Sum_probs=168.0

Q ss_pred             HHHHhhhcCC--ChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhc-----CC
Q 009568           77 PAMVAGVWSD--DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS-----GT  149 (532)
Q Consensus        77 ~~lv~~L~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~-----~~  149 (532)
                      .....++.+-  ...++.++++.|.-++..   -....+....+...+...+.... +.++..++.++..+..     ..
T Consensus       256 ~~~~~~~~~~~~ps~~rle~~qvl~~~a~~---~~~~~~~~~~l~RvI~~~~~~~~-p~~~l~~a~ll~~lg~~lv~~~~  331 (728)
T KOG4535|consen  256 SDAGSAAGSTYEPSPMRLEALQVLTLLARY---FSMTQAYLMELGRVICKCMGEAD-PSIQLHGAKLLEELGTGLIQQYK  331 (728)
T ss_pred             hhHHhhhcCccCCchhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHccCCCCC-hHHHHHHHHHHHHHHHHHhhhcC
Confidence            3444444432  245777888877766643   11112222224444455556666 8999999998888754     22


Q ss_pred             hhhHHHHHhCCChHHHHH-------hhCCCCHHHHHHHHHHHHHhhCCC----chhHHHHHhcCChHHHHHHhhhhhhhH
Q 009568          150 SENTKVVIDHGAVPIFVK-------LLASPSDDVREQAVWALGNVAGDS----PRCRDLVLSQGALIPLLAQLNERAKLS  218 (532)
Q Consensus       150 ~~~~~~i~~~g~i~~L~~-------lL~~~~~~v~~~a~~~L~nl~~~~----~~~~~~~~~~~~l~~L~~ll~~~~~~~  218 (532)
                      |+..+.-+..|.+-.+.-       .-++..+..+...+-++.+|....    +.-|..     ..+.++.-..++.+.-
T Consensus       332 P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T-----~~~~Fl~GC~d~~~~l  406 (728)
T KOG4535|consen  332 PDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQT-----LCITFLLGCNDSKNRL  406 (728)
T ss_pred             CCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchh-----hhHHHHhcccchHHHH
Confidence            332222222221111111       112344566667777777775321    111111     1122222222344445


Q ss_pred             HHHHHHHHhhhccCCC-CCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccC----Chh---HHHHHHHhCchHH
Q 009568          219 MLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG----TND---KIQAVIEAGVCPR  290 (532)
Q Consensus       219 ~~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~----~~~---~~~~~~~~~~l~~  290 (532)
                      +...|..++.-+.-++ ..........+...+...|.+..-..++.+.|+++++++.    .+.   ....+.. -.+..
T Consensus       407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~  485 (728)
T KOG4535|consen  407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLK  485 (728)
T ss_pred             HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHH
Confidence            6666777777666665 3334445566667777777777778999999999999842    111   2121111 12222


Q ss_pred             HHHhh---CCCCccchhhHHHHHHHhhcCCcchhHHHhhcC-------chHHHHH-HhcCCCchhHHHHHHHHHHHHhcC
Q 009568          291 LVELL---GHPSPSVLIPALRTVGNIVTGDDFQTQCIITYG-------ALPYLLG-LLTHSHKKSIKKEACWTISNITAG  359 (532)
Q Consensus       291 L~~lL---~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~-------~l~~L~~-lL~~~~~~~v~~~a~~~L~nl~~~  359 (532)
                      +...-   .-.+..++..+.++|+|+...-+    .+.+.+       .+..+.. ..... ...|+.+||.+++|+..+
T Consensus       486 ~~~~A~~~~Ad~dkV~~navraLgnllQvlq----~i~~~~~~e~~~~~~~~l~~~v~~~~-~~kV~WNaCya~gNLfkn  560 (728)
T KOG4535|consen  486 MLRSAIEASADKDKVKSNAVRALGNLLQFLQ----PIEKPTFAEIIEESIQALISTVLTEA-AMKVRWNACYAMGNLFKN  560 (728)
T ss_pred             HHHHHHHhhhhhhhhhhHHHHHHhhHHHHHH----HhhhccHHHHHHHHHHhcccceeccc-ccccchHHHHHHHHhhcC
Confidence            22222   22467899999999999985322    222222       2222222 22223 678999999999999875


Q ss_pred             CHHHHHHH-HHcCCHHHHHHHHhc-CchhHHHHHHHHHHHhhc
Q 009568          360 NRDQIQAV-IDAGLVGPLVNLLQN-AEFDIKKEAAWAISNATS  400 (532)
Q Consensus       360 ~~~~~~~l-~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~  400 (532)
                      ..--.+.. ....+++.|+.++.+ .+.+||..|+.+|.--..
T Consensus       561 ~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~  603 (728)
T KOG4535|consen  561 PALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK  603 (728)
T ss_pred             ccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence            22101100 112357778877765 489999999999876544

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.54  E-value=0.014  Score=61.02  Aligned_cols=239  Identities=16%  Similarity=0.110  Sum_probs=153.6

Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhHHHHH
Q 009568          121 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSPRCRDLVL  199 (532)
Q Consensus       121 ~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~  199 (532)
                      .+...+.....|.+...|.|.+...+.........+-  -++...+..+. +..+.++-.|+.+++..|+... +..  .
T Consensus       453 ~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~v-l~~--~  527 (1005)
T KOG2274|consen  453 MIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCKVKV-LLS--L  527 (1005)
T ss_pred             HHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccCcee-ccc--c
Confidence            3333444444477777899999877763222211111  12233333333 3456677778888877763221 111  1


Q ss_pred             hcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhc--CCCHHHHHHHHHHHHHhccCChh
Q 009568          200 SQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH--SNDEEVLTDACWALSYLSDGTND  277 (532)
Q Consensus       200 ~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~--~~d~~v~~~a~~~L~~l~~~~~~  277 (532)
                      .-+++..|+++. ...+.++......+|+..|..+|.........+.|.+..++.  ++||.+...+-.++-.++.....
T Consensus       528 ~p~ild~L~qla-s~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~  606 (1005)
T KOG2274|consen  528 QPMILDGLLQLA-SKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAAN  606 (1005)
T ss_pred             chHHHHHHHHHc-ccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHh
Confidence            223556666666 555778888899999999999877777777788887776653  56887777776666666642221


Q ss_pred             HHHHHHHhCchHHHHHhhCCCC----ccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHH
Q 009568          278 KIQAVIEAGVCPRLVELLGHPS----PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI  353 (532)
Q Consensus       278 ~~~~~~~~~~l~~L~~lL~~~~----~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L  353 (532)
                      + . -.....+|.+++.|..+.    ......++.+|..+..+.+.-.-..+-+-++|.+.++.-|+.+...-..+..||
T Consensus       607 ~-g-~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcL  684 (1005)
T KOG2274|consen  607 Y-G-PMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECL  684 (1005)
T ss_pred             h-c-chHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHH
Confidence            1 1 122367999999998766    455666788888888776644334444577888888887765788889999999


Q ss_pred             HHHhcCCHHHHHHH
Q 009568          354 SNITAGNRDQIQAV  367 (532)
Q Consensus       354 ~nl~~~~~~~~~~l  367 (532)
                      ..+...+.++...-
T Consensus       685 ra~Is~~~eq~~t~  698 (1005)
T KOG2274|consen  685 RALISVTLEQLLTW  698 (1005)
T ss_pred             HHHHhcCHHHHHhh
Confidence            99887666655443

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.53  E-value=0.031  Score=59.21  Aligned_cols=297  Identities=15%  Similarity=0.154  Sum_probs=168.2

Q ss_pred             HHHHHHHHHhcCC-hhhHHHHHhCCChHHHHHhhC------C--CCHHHHHHHHHHHHHhhC---CCchhHHHHHhcCCh
Q 009568          137 EAAWALTNIASGT-SENTKVVIDHGAVPIFVKLLA------S--PSDDVREQAVWALGNVAG---DSPRCRDLVLSQGAL  204 (532)
Q Consensus       137 ~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~lL~------~--~~~~v~~~a~~~L~nl~~---~~~~~~~~~~~~~~l  204 (532)
                      .|..++..++... .+.   +  .|+++.+++.|.      .  .++.-.+-|+.++++++.   ....+++. ++.-.+
T Consensus       391 Aa~~~l~~~~~KR~ke~---l--~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~-mE~flv  464 (1010)
T KOG1991|consen  391 AALDFLTTLVSKRGKET---L--PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQ-MEYFLV  464 (1010)
T ss_pred             HHHHHHHHHHHhcchhh---h--hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHH-HHHHHH
Confidence            4555666666522 222   1  256677777776      2  456778889999999873   12222222 233345


Q ss_pred             HHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhc-CCCHHHHHHHHHHHHHhccCChhH---HH
Q 009568          205 IPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH-SNDEEVLTDACWALSYLSDGTNDK---IQ  280 (532)
Q Consensus       205 ~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~l~~~~~~~---~~  280 (532)
                      ..++..+ +++..-++..|||+++.++.-+ .........++....+.|. +.+-.|+..|+.+|..+..+....   +.
T Consensus       465 ~hVfP~f-~s~~g~Lrarac~vl~~~~~~d-f~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~  542 (1010)
T KOG1991|consen  465 NHVFPEF-QSPYGYLRARACWVLSQFSSID-FKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVS  542 (1010)
T ss_pred             HHhhHhh-cCchhHHHHHHHHHHHHHHhcc-CCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHh
Confidence            5555556 6777789999999999999653 3333444667777777777 667789999999999888665432   22


Q ss_pred             HHHHhCchHHHHHhhCCCCccchhhHHHHH-HHhhcCCcchhHHHhhcCchHHHHHHhcCC--Cc---hhHHHHHHHHHH
Q 009568          281 AVIEAGVCPRLVELLGHPSPSVLIPALRTV-GNIVTGDDFQTQCIITYGALPYLLGLLTHS--HK---KSIKKEACWTIS  354 (532)
Q Consensus       281 ~~~~~~~l~~L~~lL~~~~~~v~~~al~~L-~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~---~~v~~~a~~~L~  354 (532)
                      ..+. ++++.|+.+.+.-+.+....++..+ +..+..-......+ -.++.....+++..+  .+   ..-.-.|.++|.
T Consensus       543 ~hvp-~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL-~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~  620 (1010)
T KOG1991|consen  543 AHVP-PIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVEL-CQNLAETFLKVLQTSEDEDESDDDKAIAASGILR  620 (1010)
T ss_pred             hhhh-HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHH-HHHHHHHHHHHHhccCCCCccchHHHHHHHHHHH
Confidence            2222 4555666666654444333333322 22221111111111 124455566666531  01   222334444444


Q ss_pred             HHhc------CCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCH
Q 009568          355 NITA------GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDP  428 (532)
Q Consensus       355 nl~~------~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~  428 (532)
                      .+..      ..++..+. ++..++|.+-.++++.-.++-.+++..+.+++... ++....++  |+++.+.+++....-
T Consensus       621 Ti~Til~s~e~~p~vl~~-le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~-~~Isp~mW--~ll~li~e~~~~~~~  696 (1010)
T KOG1991|consen  621 TISTILLSLENHPEVLKQ-LEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLS-KEISPIMW--GLLELILEVFQDDGI  696 (1010)
T ss_pred             HHHHHHHHHhccHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhh-cccCHHHH--HHHHHHHHHHhhhhH
Confidence            4332      23333322 23345666666777766778888887777776542 22223333  366777777776666


Q ss_pred             HHHHHHHHHHHHHHHhhhh
Q 009568          429 RIVTVCLEGLENILKVGEA  447 (532)
Q Consensus       429 ~v~~~al~~L~~l~~~~~~  447 (532)
                      +-.....-+|.|++..|..
T Consensus       697 dyf~d~~~~l~N~vt~g~~  715 (1010)
T KOG1991|consen  697 DYFTDMMPALHNYVTYGTP  715 (1010)
T ss_pred             HHHHHHHHHHhhheeeCch
Confidence            6666677777777776655

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.52  E-value=0.0006  Score=52.33  Aligned_cols=67  Identities=16%  Similarity=0.354  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhhCCCchhHHHHHh
Q 009568          134 LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL--ASPSDDVREQAVWALGNVAGDSPRCRDLVLS  200 (532)
Q Consensus       134 ~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL--~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~  200 (532)
                      ++...+.+|+|++..++...+.+.+.|++|.++...  +..+|-+++.|++++.|++..++..+..+.+
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            356778999999999999999999999999999864  4478999999999999999999998877654

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=97.50  E-value=0.025  Score=56.87  Aligned_cols=297  Identities=15%  Similarity=0.118  Sum_probs=168.7

Q ss_pred             ChHHHHHHHHHHHHHhcCCCCC----chhHhhhCCcHHHHHHhhcCC----C--CHHHHHHHHHHHHHHhcCC-hhhHHH
Q 009568           87 DSSLQLEATTQFRKLLSIERSP----PIEEVIQSGVVPRFVEFLMRE----D--YPQLQFEAAWALTNIASGT-SENTKV  155 (532)
Q Consensus        87 ~~~~~~~a~~~l~~l~~~~~~~----~~~~~i~~g~i~~Lv~lL~~~----~--~~~~~~~a~~~L~~l~~~~-~~~~~~  155 (532)
                      +.......+..+..++......    ......+..++|.+.++....    .  ++.+...+..++..+...- .+....
T Consensus        56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~  135 (415)
T PF12460_consen   56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE  135 (415)
T ss_pred             ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            4556667778887777653222    233344555888888776432    1  1355555566666655432 333333


Q ss_pred             HHhCCChHHHHHhhC----------C------CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHH
Q 009568          156 VIDHGAVPIFVKLLA----------S------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSM  219 (532)
Q Consensus       156 i~~~g~i~~L~~lL~----------~------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~  219 (532)
                      ++     ..+..++.          .      ...........+++.+-.+..- .   .....+..++.+.....++..
T Consensus       136 ~~-----~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~-~---~~~~ll~~l~~~~~~~~~~~~  206 (415)
T PF12460_consen  136 IL-----DELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSL-P---DLEELLQSLLNLALSSEDEFS  206 (415)
T ss_pred             HH-----HHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCc-c---CHHHHHHHHHHHHHcCCChHH
Confidence            32     22333221          0      1111222222333333222110 0   111256667777656666778


Q ss_pred             HHHHHHHhhhccCCCCCCCcccccchHHHHHHhh-cCCC----HHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHh
Q 009568          220 LRNATWTLSNFCRGKPQPPFDQVRPALPALAQLV-HSND----EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL  294 (532)
Q Consensus       220 ~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL-~~~d----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l  294 (532)
                      +..++.+++.+...-+...  ....++..+...+ ...+    .....-..|...-+.-.......     .++..|+.+
T Consensus       207 ~~~~~~~la~LvNK~~~~~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~~~L~~l  279 (415)
T PF12460_consen  207 RLAALQLLASLVNKWPDDD--DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----ELLDKLLEL  279 (415)
T ss_pred             HHHHHHHHHHHHcCCCChh--hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHHHH
Confidence            8888888887776532222  3344555554444 2223    33444445555444422222212     456778888


Q ss_pred             hCCCCccchhhHHHHHHHhhcCCcc--------hhHHHhhc----CchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH
Q 009568          295 LGHPSPSVLIPALRTVGNIVTGDDF--------QTQCIITY----GALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD  362 (532)
Q Consensus       295 L~~~~~~v~~~al~~L~nl~~~~~~--------~~~~~~~~----~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~  362 (532)
                      +.+  +.+...+.+.++-+....+.        ..+.+...    .++|.++...+.. +...+.....+|+++..+-|.
T Consensus       280 L~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~-~~~~k~~yL~ALs~ll~~vP~  356 (415)
T PF12460_consen  280 LSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA-DDEIKSNYLTALSHLLKNVPK  356 (415)
T ss_pred             hCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc-ChhhHHHHHHHHHHHHhhCCH
Confidence            887  56788888999888876332        12222232    3567777777766 666888888999999987665


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCC
Q 009568          363 QIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGG  402 (532)
Q Consensus       363 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~  402 (532)
                      .+-.---..++|.|++.|..++.+++..++.+|..+....
T Consensus       357 ~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  357 SVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence            4311111348999999999999999999999999998865

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.50  E-value=0.12  Score=57.56  Aligned_cols=144  Identities=10%  Similarity=0.050  Sum_probs=99.9

Q ss_pred             cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (532)
Q Consensus        75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  154 (532)
                      .+..++..|..+...+|..|+++|..+......--....++.|+.    .-+.+.. ..+|..|+..++......++...
T Consensus       817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh----~R~~Dss-asVREAaldLvGrfvl~~~e~~~  891 (1692)
T KOG1020|consen  817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVH----GRLNDSS-ASVREAALDLVGRFVLSIPELIF  891 (1692)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHH----Hhhccch-hHHHHHHHHHHhhhhhccHHHHH
Confidence            356677778888899999999999999976321112223333333    3344445 79999999999987765666655


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhh--hhhhHHHHHHHHHhhhccC
Q 009568          155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE--RAKLSMLRNATWTLSNFCR  232 (532)
Q Consensus       155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~~~~~~a~~~L~~L~~  232 (532)
                      ...     ..+..-+.++...||..++..+..+|...|.+-..      ...+.++|..  ++...+...++.++.++..
T Consensus       892 qyY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i------~~~cakmlrRv~DEEg~I~kLv~etf~klWF  960 (1692)
T KOG1020|consen  892 QYY-----DQIIERILDTGVSVRKRVIKILRDICEETPDFSKI------VDMCAKMLRRVNDEEGNIKKLVRETFLKLWF  960 (1692)
T ss_pred             HHH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH------HHHHHHHHHHhccchhHHHHHHHHHHHHHhc
Confidence            444     44555566678999999999999999888765332      3344455542  3334488888899988887


Q ss_pred             CC
Q 009568          233 GK  234 (532)
Q Consensus       233 ~~  234 (532)
                      .+
T Consensus       961 ~p  962 (1692)
T KOG1020|consen  961 TP  962 (1692)
T ss_pred             cC
Confidence            76

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=97.49  E-value=0.12  Score=55.50  Aligned_cols=343  Identities=13%  Similarity=0.134  Sum_probs=176.8

Q ss_pred             cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (532)
Q Consensus        75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  154 (532)
                      .+..+.+.+++.|..++..|++.+.++.+.....-.+.     +|...++++...+.+..=..|+-+|+.++...----.
T Consensus       342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~-----vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps  416 (1133)
T KOG1943|consen  342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQ-----VIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS  416 (1133)
T ss_pred             HHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHH-----HHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence            45667778888999999999999999998632111222     4555566665444345566888899998873211111


Q ss_pred             HHHhCCChHHHHHhhC--------CCCHHHHHHHHHHHHHhhCCCchh-HHHHHhcCChHHHHHHhhhhhhhHHHHHHHH
Q 009568          155 VVIDHGAVPIFVKLLA--------SPSDDVREQAVWALGNVAGDSPRC-RDLVLSQGALIPLLAQLNERAKLSMLRNATW  225 (532)
Q Consensus       155 ~i~~~g~i~~L~~lL~--------~~~~~v~~~a~~~L~nl~~~~~~~-~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~  225 (532)
                      .+.  .++|.+++.|.        +....||+.|+.+++.++...... -+-++. .....|+..-.-+.+..+++.|..
T Consensus       417 ~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~-~L~s~LL~~AlFDrevncRRAAsA  493 (1133)
T KOG1943|consen  417 LLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQ-SLASALLIVALFDREVNCRRAASA  493 (1133)
T ss_pred             HHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHH-HHHHHHHHHHhcCchhhHhHHHHH
Confidence            111  24566666553        234689999999999987543221 111111 112222221124567788999988


Q ss_pred             HhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHh-hCCCCccchh
Q 009568          226 TLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL-LGHPSPSVLI  304 (532)
Q Consensus       226 ~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l-L~~~~~~v~~  304 (532)
                      ++-......++.+     .+++.+. ....-.-..+.++...++.-....+.....     ++..++.. +.|=+..++.
T Consensus       494 AlqE~VGR~~n~p-----~Gi~Lis-~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~-----~f~~L~t~Kv~HWd~~ire  562 (1133)
T KOG1943|consen  494 ALQENVGRQGNFP-----HGISLIS-TIDYFSVTNRSNCYLDLCVSIAEFSGYREP-----VFNHLLTKKVCHWDVKIRE  562 (1133)
T ss_pred             HHHHHhccCCCCC-----Cchhhhh-hcchhhhhhhhhHHHHHhHHHHhhhhHHHH-----HHHHHHhcccccccHHHHH
Confidence            8876655432211     1111111 110001112222222222222222222222     22232222 4445778899


Q ss_pred             hHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH---HHHHHHH---cC---CHHH
Q 009568          305 PALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD---QIQAVID---AG---LVGP  375 (532)
Q Consensus       305 ~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~---~~~~l~~---~~---~i~~  375 (532)
                      .+.++|.+|+...+    .....+.++.++....+. +...+..+..+.+.++.+...   ....+.+   ++   +++.
T Consensus       563 laa~aL~~Ls~~~p----k~~a~~~L~~lld~~ls~-~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~  637 (1133)
T KOG1943|consen  563 LAAYALHKLSLTEP----KYLADYVLPPLLDSTLSK-DASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPP  637 (1133)
T ss_pred             HHHHHHHHHHHhhH----HhhcccchhhhhhhhcCC-ChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccH
Confidence            99999999886544    334447778888877777 777777766666666542111   1111111   12   2333


Q ss_pred             HHHH-HhcC-chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 009568          376 LVNL-LQNA-EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILK  443 (532)
Q Consensus       376 L~~l-l~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~  443 (532)
                      +... +..+ ..-++...+..+.++......-.... +-.+.-..+.+.+..++ .++..+.+++..+..
T Consensus       638 ~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~-v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s  705 (1133)
T KOG1943|consen  638 ICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDF-VIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVS  705 (1133)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHH-HHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHH
Confidence            3322 2222 23455555666666655433222222 22233334444443344 666667777666654

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.46  E-value=0.04  Score=59.62  Aligned_cols=237  Identities=13%  Similarity=0.056  Sum_probs=144.6

Q ss_pred             HHHHHhhhhhhhHHHHHHHHHhhhccCCCCC--CCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHH
Q 009568          206 PLLAQLNERAKLSMLRNATWTLSNFCRGKPQ--PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVI  283 (532)
Q Consensus       206 ~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~--~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~  283 (532)
                      .+.....++.+..++..+...|..++..++.  ........+...|..-+++.+...+...+.++..+....+.....++
T Consensus       657 ~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i  736 (1176)
T KOG1248|consen  657 TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI  736 (1176)
T ss_pred             HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            3344444555788999999999999988421  12223345556666777777888888999999888866552222233


Q ss_pred             HhCchHHHHHhhCCCCccchhhHHHHHHHhhc-------CCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHH
Q 009568          284 EAGVCPRLVELLGHPSPSVLIPALRTVGNIVT-------GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNI  356 (532)
Q Consensus       284 ~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~-------~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl  356 (532)
                      . ..++-++-.+.+.+...+..|..+|-.|+.       +++. ....++ ..++.+...+... ...+......++..+
T Consensus       737 ~-k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~ln-efl~~Isagl~gd-~~~~~as~Ivai~~i  812 (1176)
T KOG1248|consen  737 P-KLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASAILN-EFLSIISAGLVGD-STRVVASDIVAITHI  812 (1176)
T ss_pred             H-HHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHHH-HHHHHHHhhhccc-HHHHHHHHHHHHHHH
Confidence            3 234444444477777777777777776662       1111 111222 2333343333333 333333324455555


Q ss_pred             hcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHH
Q 009568          357 TAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLE  436 (532)
Q Consensus       357 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~  436 (532)
                      .......+..-.-.+++..+.-+|.++.+++++.|+..+.-++..-+........ ..+++.+..++++...+++..+..
T Consensus       813 l~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~-~~LL~sll~ls~d~k~~~r~Kvr~  891 (1176)
T KOG1248|consen  813 LQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHL-EELLPSLLALSHDHKIKVRKKVRL  891 (1176)
T ss_pred             HHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhH-HHHHHHHHHHHHhhhHHHHHHHHH
Confidence            4321221111111235666777788899999999999999998876544433322 247888888888888899999888


Q ss_pred             HHHHHHHhhhh
Q 009568          437 GLENILKVGEA  447 (532)
Q Consensus       437 ~L~~l~~~~~~  447 (532)
                      .|..+++....
T Consensus       892 LlekLirkfg~  902 (1176)
T KOG1248|consen  892 LLEKLIRKFGA  902 (1176)
T ss_pred             HHHHHHHHhCH
Confidence            88888876543

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.45  E-value=0.012  Score=60.69  Aligned_cols=260  Identities=14%  Similarity=0.161  Sum_probs=145.4

Q ss_pred             cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH--
Q 009568          118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR--  195 (532)
Q Consensus       118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~--  195 (532)
                      ..+.+-.++.+.. ..+..+|+.++.++...++....     ..+..|--+++++...+|-.|.++|..++...|..-  
T Consensus       246 ~~~fl~s~l~~K~-emV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~  319 (865)
T KOG1078|consen  246 LFPFLESCLRHKS-EMVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTV  319 (865)
T ss_pred             HHHHHHHHHhchh-HHHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccc
Confidence            4455556666666 78999999999999875544322     267888888999999999999999999986554321  


Q ss_pred             ------HHHHhcC---ChHHHHHHhhh---hhhhHHHHHHHHHhhhccCCCCCCCc-----------ccccchHHHHHHh
Q 009568          196 ------DLVLSQG---ALIPLLAQLNE---RAKLSMLRNATWTLSNFCRGKPQPPF-----------DQVRPALPALAQL  252 (532)
Q Consensus       196 ------~~~~~~~---~l~~L~~ll~~---~~~~~~~~~a~~~L~~L~~~~~~~~~-----------~~~~~~l~~L~~l  252 (532)
                            ..+-..+   ...++..+|..   ..-..+......+.++++.+......           ......+..|..+
T Consensus       320 cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~  399 (865)
T KOG1078|consen  320 CNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNM  399 (865)
T ss_pred             cchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHH
Confidence                  1111100   12222333321   11223344444444554443211000           0112344455555


Q ss_pred             hcCC-CHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchH
Q 009568          253 VHSN-DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALP  331 (532)
Q Consensus       253 L~~~-d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~  331 (532)
                      |+.. .-+.+.+...++..+....++...     ..+..|..++.+..  ...-+.++|.-+....+..   ......+.
T Consensus       400 Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDce--~~~i~~rILhlLG~EgP~a---~~Pskyir  469 (865)
T KOG1078|consen  400 LREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDCE--FTQIAVRILHLLGKEGPKA---PNPSKYIR  469 (865)
T ss_pred             HHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhcc--chHHHHHHHHHHhccCCCC---CCcchhhH
Confidence            5432 334455555555555543333222     23444555544332  2333444444443322211   11223344


Q ss_pred             HHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhh
Q 009568          332 YLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNAT  399 (532)
Q Consensus       332 ~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~  399 (532)
                      .+.+.+.-. +..+|..|..+|.++..+++...     ..+.-.|.+++.+.|.++|..|..+|.++.
T Consensus       470 ~iyNRviLE-n~ivRaaAv~alaKfg~~~~~l~-----~sI~vllkRc~~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  470 FIYNRVILE-NAIVRAAAVSALAKFGAQDVVLL-----PSILVLLKRCLNDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             HHhhhhhhh-hhhhHHHHHHHHHHHhcCCCCcc-----ccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence            455554444 77899999999999986554322     235567788888899999999999999886

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.44  E-value=0.00039  Score=44.03  Aligned_cols=39  Identities=38%  Similarity=0.760  Sum_probs=35.7

Q ss_pred             hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 009568          150 SENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVA  188 (532)
Q Consensus       150 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~  188 (532)
                      ++.+..+++.|+++.|+.++.++++.++..++|+|.||+
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            347778899999999999999999999999999999996

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.42  E-value=0.013  Score=61.34  Aligned_cols=318  Identities=12%  Similarity=0.084  Sum_probs=180.2

Q ss_pred             CCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHH
Q 009568           85 SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPI  164 (532)
Q Consensus        85 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~  164 (532)
                      +.-|.....+...+.+..+..  .....+.. -++...+..+..+..+-++..|+++++..+.  ....... ..+++..
T Consensus       461 ~e~P~Ll~Ra~~~i~~fs~~~--~~~~~~~~-~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~-~p~ild~  534 (1005)
T KOG2274|consen  461 QESPFLLLRAFLTISKFSSST--VINPQLLQ-HFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLSL-QPMILDG  534 (1005)
T ss_pred             ccCHHHHHHHHHHHHHHHhhh--ccchhHHH-HHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceecccc-chHHHHH
Confidence            444666667777777766541  11111111 1344555555554446788888888887774  2221111 2366778


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhh-hhhhhHHHHHHHHHhhhccCCCCCCCccccc
Q 009568          165 FVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN-ERAKLSMLRNATWTLSNFCRGKPQPPFDQVR  243 (532)
Q Consensus       165 L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~  243 (532)
                      |+++....+.++.-..+.+|+..+.-+|+.... .+..+.|..+.+.. .+.+|.+...+--++-.++... ........
T Consensus       535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~as-~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-~~~g~m~e  612 (1005)
T KOG2274|consen  535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAAS-MESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-ANYGPMQE  612 (1005)
T ss_pred             HHHHcccccHHHHHHHHHHHHHHhccChhhhhh-hhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-HhhcchHH
Confidence            888887788899999999999999888765433 35556666666553 4567777777777777776642 22223446


Q ss_pred             chHHHHHHhhcCCC----HHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCC-CCccchhhHHHHHHHhhcCCc
Q 009568          244 PALPALAQLVHSND----EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLIPALRTVGNIVTGDD  318 (532)
Q Consensus       244 ~~l~~L~~lL~~~d----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~  318 (532)
                      ..+|.++..+..++    .....-++..|..+..+.+.-....+-.-++|.+.++.-| ++......+-.||..+.....
T Consensus       613 ~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~  692 (1005)
T KOG2274|consen  613 RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTL  692 (1005)
T ss_pred             HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCH
Confidence            78999999998765    4455555555555554433223333334677888777654 566777888888888887655


Q ss_pred             chhHHHhhcCchH--HHHHHhcCCCchhHHHHHHHHHHHHhc----CCHHHHHHHHHcCCHHHHHHHH-hcCchhHHHHH
Q 009568          319 FQTQCIITYGALP--YLLGLLTHSHKKSIKKEACWTISNITA----GNRDQIQAVIDAGLVGPLVNLL-QNAEFDIKKEA  391 (532)
Q Consensus       319 ~~~~~~~~~~~l~--~L~~lL~~~~~~~v~~~a~~~L~nl~~----~~~~~~~~l~~~~~i~~L~~ll-~~~~~~v~~~a  391 (532)
                      ++...--..++..  .++.++..--+++.-..++..+|.+..    +-+..+...++. ++..++.-| +.....+....
T Consensus       693 eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~-IL~Avisrmq~ae~lsviQsL  771 (1005)
T KOG2274|consen  693 EQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQ-ILRAVISRLQQAETLSVIQSL  771 (1005)
T ss_pred             HHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHH-HHHHHHHHHHHhhhHHHHHHH
Confidence            4433222222222  333333211133344444545554432    211112221111 233333333 33467788888


Q ss_pred             HHHHHHhhcCCCHHHHHHHH
Q 009568          392 AWAISNATSGGTHEQIKYLV  411 (532)
Q Consensus       392 ~~aL~nl~~~~~~~~~~~l~  411 (532)
                      ..+++.++..........|.
T Consensus       772 i~VfahL~~t~~~~~l~FL~  791 (1005)
T KOG2274|consen  772 IMVFAHLVHTDLDQLLNFLS  791 (1005)
T ss_pred             HHHHHHHhhCCHHHHHHHHH
Confidence            88888887754333333333

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.41  E-value=0.014  Score=52.45  Aligned_cols=256  Identities=17%  Similarity=0.204  Sum_probs=159.6

Q ss_pred             HHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q 009568          119 VPRFVEFLMRED-YPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL  197 (532)
Q Consensus       119 i~~Lv~lL~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~  197 (532)
                      +..+.+.|...+ ...-++.|+..|.++...           +.+..+.+...+.+..++...+.+|+.....       
T Consensus         5 i~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~-----------~~i~~i~ka~~d~s~llkhe~ay~LgQ~~~~-------   66 (289)
T KOG0567|consen    5 IETIGNILVNKSQPLQNRFRALFNLRNLLGP-----------AAIKAITKAFIDDSALLKHELAYVLGQMQDE-------   66 (289)
T ss_pred             HHHHHHHHcCccHHHHHHHHHHHhhhccCCh-----------HHHHHHHHhcccchhhhccchhhhhhhhccc-------
Confidence            445555555433 134566777777777662           2256666666666667777888888877432       


Q ss_pred             HHhcCChHHHHHHhh-hhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh
Q 009568          198 VLSQGALIPLLAQLN-ERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN  276 (532)
Q Consensus       198 ~~~~~~l~~L~~ll~-~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~  276 (532)
                          ..++.|+..+. .+..+-++..+..+|..+..          ...++.+-+..+++-..|.+.+..++.++-....
T Consensus        67 ----~Av~~l~~vl~desq~pmvRhEAaealga~~~----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~  132 (289)
T KOG0567|consen   67 ----DAVPVLVEVLLDESQEPMVRHEAAEALGAIGD----------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDI  132 (289)
T ss_pred             ----hhhHHHHHHhcccccchHHHHHHHHHHHhhcc----------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhc
Confidence                25778888774 34467788899999998873          3567788888877777788877777777643211


Q ss_pred             hHH----HHH--H------HhCchHHHHHhhCCC-Ccc-chhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCc
Q 009568          277 DKI----QAV--I------EAGVCPRLVELLGHP-SPS-VLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHK  342 (532)
Q Consensus       277 ~~~----~~~--~------~~~~l~~L~~lL~~~-~~~-v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~  342 (532)
                      -..    ...  +      ..+-+..+-..|.+. .+. -+..|+..|.|+-.  +         ..+..|..-+..+ +
T Consensus       133 ~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~--E---------eaI~al~~~l~~~-S  200 (289)
T KOG0567|consen  133 IDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT--E---------EAINALIDGLADD-S  200 (289)
T ss_pred             cccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc--H---------HHHHHHHHhcccc-h
Confidence            000    000  0      001122222222211 111 13344444444331  1         2345666677777 8


Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHH
Q 009568          343 KSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA--EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLC  420 (532)
Q Consensus       343 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~  420 (532)
                      .-.|.++++++|.+-+  +.         .+|.|...|...  ++-||.+|+.||+.++..            .+++.|.
T Consensus       201 alfrhEvAfVfGQl~s--~~---------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e------------~~~~vL~  257 (289)
T KOG0567|consen  201 ALFRHEVAFVFGQLQS--PA---------AIPSLIKVLLDETEHPMVRHEAAEALGAIADE------------DCVEVLK  257 (289)
T ss_pred             HHHHHHHHHHHhhccc--hh---------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH------------HHHHHHH
Confidence            8999999999999854  22         456777777653  789999999999999752            2577788


Q ss_pred             hhcCCCCHHHHHHHHHHHHHH
Q 009568          421 DLFVCPDPRIVTVCLEGLENI  441 (532)
Q Consensus       421 ~lL~~~d~~v~~~al~~L~~l  441 (532)
                      .++.++++-|+..|.-+|..+
T Consensus       258 e~~~D~~~vv~esc~valdm~  278 (289)
T KOG0567|consen  258 EYLGDEERVVRESCEVALDML  278 (289)
T ss_pred             HHcCCcHHHHHHHHHHHHHHH
Confidence            888888888877777666644

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.41  E-value=0.026  Score=57.94  Aligned_cols=142  Identities=14%  Similarity=0.127  Sum_probs=88.2

Q ss_pred             CchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhc------CCCchhHHHHHHHHHHHHhcC
Q 009568          286 GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLT------HSHKKSIKKEACWTISNITAG  359 (532)
Q Consensus       286 ~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~------~~~~~~v~~~a~~~L~nl~~~  359 (532)
                      |++-.++..|..++-+++..++.+.-.|++...  ...     ++..|-+=+.      +......|.....++..++..
T Consensus       317 ~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN--ved-----iv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~  389 (948)
T KOG1058|consen  317 GLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN--VED-----IVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVK  389 (948)
T ss_pred             HHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc--HHH-----HHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhc
Confidence            455567778888999999999988888876443  111     1222222221      111346788888999999887


Q ss_pred             CHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCC-CCHHHHHHHHHHH
Q 009568          360 NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC-PDPRIVTVCLEGL  438 (532)
Q Consensus       360 ~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~-~d~~v~~~al~~L  438 (532)
                      .|+..     ..+++.|++.+.+.++......+..+......- +..     ...++..|+.-+.. ...++...++|++
T Consensus       390 Fp~~a-----atvV~~ll~fisD~N~~aas~vl~FvrE~iek~-p~L-----r~~ii~~l~~~~~~irS~ki~rgalwi~  458 (948)
T KOG1058|consen  390 FPEVA-----ATVVSLLLDFISDSNEAAASDVLMFVREAIEKF-PNL-----RASIIEKLLETFPQIRSSKICRGALWIL  458 (948)
T ss_pred             ChHHH-----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhC-chH-----HHHHHHHHHHhhhhhcccccchhHHHHH
Confidence            77644     346789999998887665544444444444321 111     22345556555542 5567778888888


Q ss_pred             HHHHHhh
Q 009568          439 ENILKVG  445 (532)
Q Consensus       439 ~~l~~~~  445 (532)
                      ...+...
T Consensus       459 GeYce~~  465 (948)
T KOG1058|consen  459 GEYCEGL  465 (948)
T ss_pred             HHHHhhh
Confidence            8776543

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.40  E-value=0.0012  Score=50.76  Aligned_cols=92  Identities=14%  Similarity=0.182  Sum_probs=67.8

Q ss_pred             hhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc
Q 009568          303 LIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN  382 (532)
Q Consensus       303 ~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~  382 (532)
                      |..++.+|+.++.+-.......++ .+++.++..+.++ ++.||..||.+|.|++....+.+-..+ ..+++.|.+++.+
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~-d~rVRy~AcEaL~ni~k~~~~~~l~~f-~~IF~~L~kl~~D   79 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDDQ-DSRVRYYACEALYNISKVARGEILPYF-NEIFDALCKLSAD   79 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC
Confidence            556777788777666655544444 6889999999999 999999999999999874333332222 3488899999999


Q ss_pred             CchhHHHHHHHHHHHh
Q 009568          383 AEFDIKKEAAWAISNA  398 (532)
Q Consensus       383 ~~~~v~~~a~~aL~nl  398 (532)
                      .++.||..| ..|-++
T Consensus        80 ~d~~Vr~~a-~~Ld~l   94 (97)
T PF12755_consen   80 PDENVRSAA-ELLDRL   94 (97)
T ss_pred             CchhHHHHH-HHHHHH
Confidence            999988665 555444

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.34  E-value=0.027  Score=57.70  Aligned_cols=170  Identities=18%  Similarity=0.197  Sum_probs=112.8

Q ss_pred             chHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHH-hcCCCchhHHHHHHHHHHHHhcCCHHHHH
Q 009568          287 VCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGL-LTHSHKKSIKKEACWTISNITAGNRDQIQ  365 (532)
Q Consensus       287 ~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~l-L~~~~~~~v~~~a~~~L~nl~~~~~~~~~  365 (532)
                      +=+.+-+++.+.++-+|...+.+++---.++.       +.+++..|+.+ .++. +.+||+.|..+|+-++..++++  
T Consensus       520 Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~-nDDVrRaAVialGFVl~~dp~~--  589 (929)
T KOG2062|consen  520 ADPLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDV-NDDVRRAAVIALGFVLFRDPEQ--  589 (929)
T ss_pred             hHHHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhccccccc-chHHHHHHHHHheeeEecChhh--
Confidence            33445566777788788777766654333322       22456666666 4555 8899999999999999888874  


Q ss_pred             HHHHcCCHHHHHHHHhcC-chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 009568          366 AVIDAGLVGPLVNLLQNA-EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV  444 (532)
Q Consensus       366 ~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~  444 (532)
                             +|..+.+|... ++.||.-|+.||+-.|.+.....        ++..|-.+.+++..-|+..|+-++.-|+..
T Consensus       590 -------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e--------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q  654 (929)
T KOG2062|consen  590 -------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE--------AINLLEPLTSDPVDFVRQGALIALAMIMIQ  654 (929)
T ss_pred             -------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH--------HHHHHhhhhcChHHHHHHHHHHHHHHHHHh
Confidence                   36666777654 89999999999998887643222        233333445566677999999998888754


Q ss_pred             hhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHH
Q 009568          445 GEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILET  495 (532)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~  495 (532)
                      ....         .++-...|     ...++++..+.+++.-.+--.+|.+
T Consensus       655 ~t~~---------~~pkv~~f-----rk~l~kvI~dKhEd~~aK~GAilAq  691 (929)
T KOG2062|consen  655 QTEQ---------LCPKVNGF-----RKQLEKVINDKHEDGMAKFGAILAQ  691 (929)
T ss_pred             cccc---------cCchHHHH-----HHHHHHHhhhhhhHHHHHHHHHHHh
Confidence            3321         22223333     3567788888888877666556554

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.32  E-value=0.012  Score=51.35  Aligned_cols=93  Identities=19%  Similarity=0.223  Sum_probs=74.4

Q ss_pred             CccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHH
Q 009568          299 SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVN  378 (532)
Q Consensus       299 ~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~  378 (532)
                      ++.+|..++.++|-++...+...+     ..++.+...|.++ ++.||+.|+.+|..+...+.-..    +..++..++.
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~-~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~   70 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDE-DPLVRKTALLVLSHLILEDMIKV----KGQLFSRILK   70 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHH
Confidence            356889999999999987664433     5688999999999 99999999999999986432211    2224477778


Q ss_pred             HHhcCchhHHHHHHHHHHHhhcC
Q 009568          379 LLQNAEFDIKKEAAWAISNATSG  401 (532)
Q Consensus       379 ll~~~~~~v~~~a~~aL~nl~~~  401 (532)
                      ++.+++++|+..|..++..+...
T Consensus        71 ~l~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   71 LLVDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHh
Confidence            88889999999999999999886

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=97.31  E-value=0.0076  Score=59.63  Aligned_cols=155  Identities=18%  Similarity=0.209  Sum_probs=110.2

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHh-hCCCCccchhhHHHHHHHhhcCCcchhHHHhh
Q 009568          248 ALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL-LGHPSPSVLIPALRTVGNIVTGDDFQTQCIIT  326 (532)
Q Consensus       248 ~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l-L~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~  326 (532)
                      .+.+++.+.|+-++.....+++---.+..       ..+++..+++. .++.+.+++..|+-+||-+|..+.        
T Consensus       520 ~I~ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~--------  584 (926)
T COG5116         520 YINELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR--------  584 (926)
T ss_pred             HHHHHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCc--------
Confidence            56677777788787777666543222211       12677888888 677899999999999998887544        


Q ss_pred             cCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHH
Q 009568          327 YGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQ  406 (532)
Q Consensus       327 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~  406 (532)
                       ..++..+.+|..++++.||...+.+|+-.|+++..+.       .+..|-.++.+...-||+.|+.+++-+...++++.
T Consensus       585 -~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~L  656 (926)
T COG5116         585 -DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPEL  656 (926)
T ss_pred             -chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCccc
Confidence             4567788888777799999999999999998755533       34456666777788899999999999988766543


Q ss_pred             HHHHHHcCChHHHHhhcCCCC
Q 009568          407 IKYLVREGCIKPLCDLFVCPD  427 (532)
Q Consensus       407 ~~~l~~~~~l~~L~~lL~~~d  427 (532)
                      ....  .++++.+..++..+.
T Consensus       657 np~v--~~I~k~f~~vI~~Kh  675 (926)
T COG5116         657 NPNV--KRIIKKFNRVIVDKH  675 (926)
T ss_pred             ChhH--HHHHHHHHHHHhhhh
Confidence            3332  235556666555443

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.30  E-value=0.011  Score=61.12  Aligned_cols=223  Identities=15%  Similarity=0.108  Sum_probs=148.6

Q ss_pred             chhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCC-CHHHHHHHHHHHHH
Q 009568          192 PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN-DEEVLTDACWALSY  270 (532)
Q Consensus       192 ~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~  270 (532)
                      ...|...++.|+...|+++. ....+........+|..    .-..........++.+...++.. ...-...++.++.|
T Consensus       494 K~~~~~~Ik~~~~~aLlrl~-~~q~e~akl~~~~aL~~----~i~f~~~~~~~v~~~~~s~~~~d~~~~en~E~L~altn  568 (748)
T KOG4151|consen  494 KYERAKKIKPGGYEALLRLG-QQQFEEAKLKWYHALAG----KIDFPGERSYEVVKPLDSALHNDEKGLENFEALEALTN  568 (748)
T ss_pred             HHhcCccccccHHHHHHHHH-HHhchHHHHHHHHHHhh----hcCCCCCchhhhhhhhcchhhhhHHHHHHHHHHHHhhc
Confidence            33455677888999999998 55555666666666661    11111112234444554444432 22235567888999


Q ss_pred             hccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhh-cCchHHHHHHhcCCCchhHHHHH
Q 009568          271 LSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIIT-YGALPYLLGLLTHSHKKSIKKEA  349 (532)
Q Consensus       271 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~a  349 (532)
                      |+..+....+.+++...++.+-.++...++..+..++..+.||..++.-....+.+ ...++.....+... +......+
T Consensus       569 Las~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~-~E~~~lA~  647 (748)
T KOG4151|consen  569 LASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA-DEKFELAG  647 (748)
T ss_pred             ccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh-hhHHhhhc
Confidence            98776666667888888888888888999999999999999999887755556666 34556666666554 77777788


Q ss_pred             HHHHHHHhcCCHHHHHH-HHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHh
Q 009568          350 CWTISNITAGNRDQIQA-VIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCD  421 (532)
Q Consensus       350 ~~~L~nl~~~~~~~~~~-l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~  421 (532)
                      +.++.-|+.-...++.. .--......+..++.+.++.++...+..+.|+.. ...+....+.....+..+..
T Consensus       648 a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~-~~~ei~~~~~~~~~~~~l~~  719 (748)
T KOG4151|consen  648 AGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFE-ALFEIAEKIFETEVMELLSG  719 (748)
T ss_pred             cccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHH-HHHHHHHHhccchHHHHHHH
Confidence            88777676644444442 2234567888899999999999999999999443 34455555554444444443

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.30  E-value=0.0007  Score=42.82  Aligned_cols=38  Identities=50%  Similarity=0.733  Sum_probs=34.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhh
Q 009568          362 DQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNAT  399 (532)
Q Consensus       362 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~  399 (532)
                      +....+++.|+++.|+.++.++++++++.|+|+|.|++
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            45667889999999999999889999999999999986

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.29  E-value=0.0085  Score=52.38  Aligned_cols=96  Identities=22%  Similarity=0.222  Sum_probs=76.8

Q ss_pred             CHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHH
Q 009568          257 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGL  336 (532)
Q Consensus       257 d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~l  336 (532)
                      ++.++..++.+++.++...+...+     ..++.+...|.++++.+|..|+.+|..|....-..    ++..++..++.+
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~~   71 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK----VKGQLFSRILKL   71 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHHH
Confidence            578999999999999977665443     67889999999999999999999999998753311    222344778888


Q ss_pred             hcCCCchhHHHHHHHHHHHHhcC-CHH
Q 009568          337 LTHSHKKSIKKEACWTISNITAG-NRD  362 (532)
Q Consensus       337 L~~~~~~~v~~~a~~~L~nl~~~-~~~  362 (532)
                      +.++ ++.|+..|..++..+... .+.
T Consensus        72 l~D~-~~~Ir~~A~~~~~e~~~~~~~~   97 (178)
T PF12717_consen   72 LVDE-NPEIRSLARSFFSELLKKRNPN   97 (178)
T ss_pred             HcCC-CHHHHHHHHHHHHHHHHhccch
Confidence            8888 999999999999999874 444

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.28  E-value=0.026  Score=54.24  Aligned_cols=206  Identities=11%  Similarity=0.066  Sum_probs=144.3

Q ss_pred             HHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcch-----hHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHH
Q 009568          280 QAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ-----TQCIITYGALPYLLGLLTHSHKKSIKKEACWTIS  354 (532)
Q Consensus       280 ~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~-----~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~  354 (532)
                      +.+...+++..|+..|..-+.+.+..+..+.+++.......     .+++.. ..-..+..++..-.++++--.+...|.
T Consensus        70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~-~~peil~~L~~gy~~~dial~~g~mlR  148 (335)
T PF08569_consen   70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLER-HRPEILDILLRGYENPDIALNCGDMLR  148 (335)
T ss_dssp             HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHh-CCHHHHHHHHHHhcCccccchHHHHHH
Confidence            45667799999999999988899999999999998765432     223333 222333333332224556666666666


Q ss_pred             HHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc---CChHHHHhhcCCCCHHHH
Q 009568          355 NITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVRE---GCIKPLCDLFVCPDPRIV  431 (532)
Q Consensus       355 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~---~~l~~L~~lL~~~d~~v~  431 (532)
                      .++.. +...+.++....+..+++.++.++.++...|..++..+..... .....++..   .....+..+|.+++.-++
T Consensus       149 ec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk-~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk  226 (335)
T PF08569_consen  149 ECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHK-KLVAEFLSNNYDRFFQKYNKLLESSNYVTK  226 (335)
T ss_dssp             HHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSH-HHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred             HHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence            66654 6667778888888899999999999999999999999877643 333333332   446788889999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009568          432 TVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL  498 (532)
Q Consensus       432 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~  498 (532)
                      ..++..|..++-......          -....+.+..-+..+..|..+++..|+-.|..+..-|..
T Consensus       227 rqslkLL~ellldr~n~~----------vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVA  283 (335)
T PF08569_consen  227 RQSLKLLGELLLDRSNFN----------VMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVA  283 (335)
T ss_dssp             HHHHHHHHHHHHSGGGHH----------HHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHchhHHH----------HHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHh
Confidence            999999999997654422          234556666778888899999999999999998876643

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.27  E-value=0.0092  Score=57.25  Aligned_cols=202  Identities=13%  Similarity=0.092  Sum_probs=142.6

Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh-----HHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhh
Q 009568          155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC-----RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSN  229 (532)
Q Consensus       155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~-----~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~  229 (532)
                      .+...+.+..|+..|..-+-+.+..++.+..++.......     .+.+.. ..-..+..++....++++.-.+...|..
T Consensus        71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~-~~peil~~L~~gy~~~dial~~g~mlRe  149 (335)
T PF08569_consen   71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLER-HRPEILDILLRGYENPDIALNCGDMLRE  149 (335)
T ss_dssp             HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHh-CCHHHHHHHHHHhcCccccchHHHHHHH
Confidence            4556688899999998888999999999999988654333     223332 2233344444445577777777777777


Q ss_pred             ccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHh---CchHHHHHhhCCCCccchhhH
Q 009568          230 FCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLGHPSPSVLIPA  306 (532)
Q Consensus       230 L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~---~~l~~L~~lL~~~~~~v~~~a  306 (532)
                      .++.............+..+...+..++=++..+|..++..+...+.......+..   .++.....+|.+++..++..+
T Consensus       150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs  229 (335)
T PF08569_consen  150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS  229 (335)
T ss_dssp             HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred             HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence            77764333333335556667778888899999999999999877766666666655   367788889999999999999


Q ss_pred             HHHHHHhhcCCcch---hHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 009568          307 LRTVGNIVTGDDFQ---TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (532)
Q Consensus       307 l~~L~nl~~~~~~~---~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  358 (532)
                      +..||.|.......   ++++-+..-+..++.+|++. +..++-+|..++--+.+
T Consensus       230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVA  283 (335)
T PF08569_consen  230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVA  283 (335)
T ss_dssp             HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHh
Confidence            99999998754421   23444556789999999998 99999999999888776

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.23  E-value=0.016  Score=62.41  Aligned_cols=161  Identities=23%  Similarity=0.243  Sum_probs=123.7

Q ss_pred             CcHHHHHHhhcCC---CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCc
Q 009568          117 GVVPRFVEFLMRE---DYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSP  192 (532)
Q Consensus       117 g~i~~Lv~lL~~~---~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~  192 (532)
                      .+.|.+++..+.+   ++|++|..|.-+|+.+..-+.+.+..-     +|.|+..+. ++++.+|.+++-+++-++..-|
T Consensus       919 ~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~-----l~llftimeksp~p~IRsN~VvalgDlav~fp  993 (1251)
T KOG0414|consen  919 RFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESH-----LPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP  993 (1251)
T ss_pred             HHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHH-----HHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence            3678888888532   239999999999999988676665543     589999887 6899999999999999986555


Q ss_pred             hhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 009568          193 RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS  272 (532)
Q Consensus       193 ~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~  272 (532)
                      ..-+.     .-+.|...| .+.++.+++.|+.+|++|...+    ...++|.++-+..+|.++++++..-|=..+..|+
T Consensus       994 nlie~-----~T~~Ly~rL-~D~~~~vRkta~lvlshLILnd----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen  994 NLIEP-----WTEHLYRRL-RDESPSVRKTALLVLSHLILND----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred             cccch-----hhHHHHHHh-cCccHHHHHHHHHHHHHHHHhh----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence            43222     345566666 7889999999999999998763    5567899999999999999999887777777777


Q ss_pred             cCChhHHHHHHHhCchHHHHHhhCCC
Q 009568          273 DGTNDKIQAVIEAGVCPRLVELLGHP  298 (532)
Q Consensus       273 ~~~~~~~~~~~~~~~l~~L~~lL~~~  298 (532)
                      ...+..    +  +++|.++..|+++
T Consensus      1064 ~k~n~i----y--nlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1064 SKGNTI----Y--NLLPDILSRLSNG 1083 (1251)
T ss_pred             hcccch----h--hhchHHHHhhccC
Confidence            554322    1  5677777777665

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.20  E-value=0.055  Score=54.68  Aligned_cols=204  Identities=15%  Similarity=0.115  Sum_probs=129.4

Q ss_pred             cCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCC-----CCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 009568           84 WSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE-----DYPQLQFEAAWALTNIASGTSENTKVVID  158 (532)
Q Consensus        84 ~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~i~~  158 (532)
                      .+.++.+..+|+++|.+++... ....+.+++.|..+.+++.|+..     + +++.+-..++|.-++...++.+..+++
T Consensus        42 ~~~~~~v~~EALKCL~N~lf~s-~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~-~d~~Fl~~RLLFLlTa~~~~~~~~L~~  119 (446)
T PF10165_consen   42 ESPDPDVSREALKCLCNALFLS-PSARQIFVDLGLAEKLCERLKNYSDSSQP-SDVEFLDSRLLFLLTALRPDDRKKLIE  119 (446)
T ss_pred             cCCChHHHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHHHcccccCCC-hhHHHHHHHHHHHHhcCChhHHHHHHH
Confidence            3567889999999999999863 34456677999999999999876     4 799999999999999888888877776


Q ss_pred             C-CChHHHHHhhCC-----------------CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhh------
Q 009568          159 H-GAVPIFVKLLAS-----------------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNER------  214 (532)
Q Consensus       159 ~-g~i~~L~~lL~~-----------------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~------  214 (532)
                      . +++..+...|..                 .+......++.++.|+..+.+.... -.....++.++.++..-      
T Consensus       120 e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~  198 (446)
T PF10165_consen  120 EHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPS  198 (446)
T ss_pred             HhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCC
Confidence            5 677777765531                 1345566778888898766554322 11233455555554322      


Q ss_pred             --hhhHHHHHHHHHhhhccCCCC------------CCCcccccchHHHHHHhhc----CC----CHHHHHHHHHHHHHhc
Q 009568          215 --AKLSMLRNATWTLSNFCRGKP------------QPPFDQVRPALPALAQLVH----SN----DEEVLTDACWALSYLS  272 (532)
Q Consensus       215 --~~~~~~~~a~~~L~~L~~~~~------------~~~~~~~~~~l~~L~~lL~----~~----d~~v~~~a~~~L~~l~  272 (532)
                        ........++-+|.|+-....            ..........+..|+.+|.    ..    -.+.....+..|..++
T Consensus       199 ~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~  278 (446)
T PF10165_consen  199 SPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLA  278 (446)
T ss_pred             CCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHH
Confidence              234566777777777722110            0001111234445555543    21    2356777888888888


Q ss_pred             cCChhHHHHHHHhCchHHH
Q 009568          273 DGTNDKIQAVIEAGVCPRL  291 (532)
Q Consensus       273 ~~~~~~~~~~~~~~~l~~L  291 (532)
                      ..+... ...+...++|..
T Consensus       279 ~~~~~~-Rk~lr~~lLP~~  296 (446)
T PF10165_consen  279 RAAREV-RKYLRARLLPPD  296 (446)
T ss_pred             HhcHHH-HHHHHHHhCCCh
Confidence            766443 444444444444

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>PRK14707 hypothetical protein; Provisional

Probab=97.20  E-value=0.31  Score=56.22  Aligned_cols=355  Identities=17%  Similarity=0.130  Sum_probs=204.2

Q ss_pred             HHHHHHhhc-CCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-C-CHHHHHHHHHHHHHhhCCCchhH
Q 009568          119 VPRFVEFLM-REDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-P-SDDVREQAVWALGNVAGDSPRCR  195 (532)
Q Consensus       119 i~~Lv~lL~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~-~~~v~~~a~~~L~nl~~~~~~~~  195 (532)
                      +-.+++-++ .+++.+.+..+......++.+ ...+..+ +...|..++..++. + ++..+..+...-..++.+ ...+
T Consensus       165 ~~lllNafSKw~~~~~c~~aa~~la~~~~~~-d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~-~~l~  241 (2710)
T PRK14707        165 ISLALNAFSKWSDNPDCQAVAPRFAALVASD-DRLRSAM-DAQGVATVLNALCKWPDTPDCGNAVSALAERLADE-SRLR  241 (2710)
T ss_pred             HHHHHHHhhcCCCCchHHHHHHHHHHHhcCC-hhhhccc-chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCc-HHHH
Confidence            334444443 344477888777777777773 3444333 45567777777766 4 455554444444445444 4445


Q ss_pred             HHHHhcCChHHHHHHhhhhhhhHHHHHHHHHh-hhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 009568          196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTL-SNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG  274 (532)
Q Consensus       196 ~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L-~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~  274 (532)
                      ..+-..| +-..++.|.+-++......++.++ ..+..+........-..+-..|..+-+-+|..+-..+...|..-...
T Consensus       242 ~~~~~q~-va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~  320 (2710)
T PRK14707        242 NELKPQE-LGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLAD  320 (2710)
T ss_pred             HhCChHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhc
Confidence            4444444 555566665666655555554444 45554422111111223333444444566777766666666543333


Q ss_pred             ChhHHHHHHHhCchHHHHHhh-CCCCccchhhHHHH-HHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHH
Q 009568          275 TNDKIQAVIEAGVCPRLVELL-GHPSPSVLIPALRT-VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWT  352 (532)
Q Consensus       275 ~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~al~~-L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~  352 (532)
                      .++..+ -++...+...++-| +.++..+-..|... ...++. ++...+. ++...+..+++.|+.-.+..+...|+..
T Consensus       321 d~~l~~-~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~-d~~l~~~-l~~q~~a~~lNalsKWp~~~~c~~aa~~  397 (2710)
T PRK14707        321 DPELCK-ALNARGLSTALNALSKWPDNPVCAAAVSALAERLVA-DPELRKD-LEPQGVSSVLNALSKWPDTPVCAAAASA  397 (2710)
T ss_pred             cHhhhh-ccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhcc-CHhhhcc-cchhHHHHHHhhhhcCCCchHHHHHHHH
Confidence            343322 23333444444545 34554444444444 444543 4444433 3444555566666544366777777777


Q ss_pred             HHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHH
Q 009568          353 ISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVT  432 (532)
Q Consensus       353 L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~  432 (532)
                      |..=..++++....+-..|+-..|-.+-+.++..+...++.+|.--... +.+.++.|--.++...|-.+-+.+|..+..
T Consensus       398 LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~-d~~l~~~~~p~~va~~LnalSKWPd~p~c~  476 (2710)
T PRK14707        398 LAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAH-DTELCKALDPINVTQALDALSKWPDTPICG  476 (2710)
T ss_pred             HHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhc-cHHHHhhcChHHHHHHHHHhhcCCCChhHH
Confidence            7765566677666655556655665566678889999999888877665 556665555556666666677789998888


Q ss_pred             HHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHH
Q 009568          433 VCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILE  494 (532)
Q Consensus       433 ~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~  494 (532)
                      .+.+.|..=+.....             .+..|.-.+....|..|...++......|..-|.
T Consensus       477 ~aa~~La~~l~~~~~-------------l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA  525 (2710)
T PRK14707        477 QTASALAARLAHERR-------------LRKALKPQEVVIALHSLSKWPDTPICAEAASALA  525 (2710)
T ss_pred             HHHHHHHHHhcccHH-------------HHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Confidence            777777665543322             3555666677788888888888777766644443

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.19  E-value=0.52  Score=52.73  Aligned_cols=229  Identities=15%  Similarity=0.138  Sum_probs=126.6

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhh---CCC--------CccchhhHHHHHHHhhc
Q 009568          247 PALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL---GHP--------SPSVLIPALRTVGNIVT  315 (532)
Q Consensus       247 ~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL---~~~--------~~~v~~~al~~L~nl~~  315 (532)
                      ..|.+++-.........|..|++.++..-......+.  .++..+...|   ++.        ........+.++|-++.
T Consensus      1124 e~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~--~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~R 1201 (1692)
T KOG1020|consen 1124 EDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVK--ACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSR 1201 (1692)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHH--HHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHH
Confidence            3444444444455566677777777642111111111  2223333333   222        22345667889999987


Q ss_pred             CCcc-------h----hHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCc
Q 009568          316 GDDF-------Q----TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAE  384 (532)
Q Consensus       316 ~~~~-------~----~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~  384 (532)
                      ..+-       .    ....+..+++..|.-+.++. +..+|..|...|+.+|...+.   .+.+..+...+...+.+..
T Consensus      1202 yfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~-~~~lR~~al~~Lg~~ci~hp~---l~~~~~v~nly~~ila~~n 1277 (1692)
T KOG1020|consen 1202 YFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDK-DGELRRKALINLGFICIQHPS---LFTSREVLNLYDEILADDN 1277 (1692)
T ss_pred             hccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHhhCch---hhhhHHHHHHHHHHHhhhc
Confidence            3220       0    11134446677777777777 899999999999999986554   2333334444444554432


Q ss_pred             hhH--HHHHHHHHHHhhcC---------------CCHHHHHHHHH-------cCC--------hHHHHhhcCCCCHHHHH
Q 009568          385 FDI--KKEAAWAISNATSG---------------GTHEQIKYLVR-------EGC--------IKPLCDLFVCPDPRIVT  432 (532)
Q Consensus       385 ~~v--~~~a~~aL~nl~~~---------------~~~~~~~~l~~-------~~~--------l~~L~~lL~~~d~~v~~  432 (532)
                      ...  +..+...+.-+...               ...+....+..       .|+        ++.+++..-+.|..++.
T Consensus      1278 ~~~~~ki~~l~n~~~yL~eee~~l~~~~~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl~~d~~~r~ 1357 (1692)
T KOG1020|consen 1278 SDIKSKIQLLQNLELYLLEEEKKLRNKGKNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLDNILESCLDRDLQVRL 1357 (1692)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhcccccccccccchHHHHHHHHHHHHHHHhccchHHHH
Confidence            222  22222222211110               01122222211       111        23333333357889999


Q ss_pred             HHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009568          433 VCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLE  499 (532)
Q Consensus       433 ~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~  499 (532)
                      .|++.+..+++.|           -++|..       .++.|..|-.++.+.+++.|..++..++..
T Consensus      1358 ~aikvl~liL~QG-----------LVhP~~-------cvPtLIAL~Tdp~~~~r~~Ad~LL~eid~k 1406 (1692)
T KOG1020|consen 1358 VAIKVLKLILNQG-----------LVHPVH-------CVPTLIALETDPSQAIRHVADELLKEIDEK 1406 (1692)
T ss_pred             HHHHHHHHHHHcc-----------CCCccc-------hhhhheeecCChHHHHHHHHHHHHHHHHHh
Confidence            9999999999876           333332       267888888999999999999988877653

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=97.16  E-value=0.0024  Score=66.55  Aligned_cols=190  Identities=19%  Similarity=0.144  Sum_probs=130.0

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH--------HHHh----cCChHHHHHHhhhhhhhHHHHHHHHHhhh
Q 009568          162 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD--------LVLS----QGALIPLLAQLNERAKLSMLRNATWTLSN  229 (532)
Q Consensus       162 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~--------~~~~----~~~l~~L~~ll~~~~~~~~~~~a~~~L~~  229 (532)
                      -..|+.+|+.  +++-..+..++.-+..|++..+.        .+..    ..++|.+++.+ ...+...+.+...+|++
T Consensus       817 a~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~-~t~~~~~K~~yl~~Lsh  893 (1030)
T KOG1967|consen  817 AEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKF-ETAPGSQKHNYLEALSH  893 (1030)
T ss_pred             HHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHh-ccCCccchhHHHHHHHH
Confidence            3556666654  44555566666666666543321        1111    34677777777 35556677778888888


Q ss_pred             ccCCCCCCC-cccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCC---ccchhh
Q 009568          230 FCRGKPQPP-FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS---PSVLIP  305 (532)
Q Consensus       230 L~~~~~~~~-~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~---~~v~~~  305 (532)
                      ...+-|... ......++|.|++.|.-+|..++..++.++.-+....+.....-++ .++|.++.+=.+++   ..+|..
T Consensus       894 Vl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~  972 (1030)
T KOG1967|consen  894 VLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVRED  972 (1030)
T ss_pred             HHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHHHH
Confidence            877544322 2234678888889999999999999999998877655544332232 56777777766654   578999


Q ss_pred             HHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHH
Q 009568          306 ALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNI  356 (532)
Q Consensus       306 al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl  356 (532)
                      |+.+|+.|.+..+...-......++..|.+.|.++ ..-||++|..+=.+.
T Consensus       973 ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen  973 ALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTRQNW 1022 (1030)
T ss_pred             HHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHhhhh
Confidence            99999999986664443445557888999999988 888999998775554

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.15  E-value=0.0099  Score=63.92  Aligned_cols=146  Identities=17%  Similarity=0.177  Sum_probs=114.7

Q ss_pred             ccchHHHHHHhhc----CCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhC-CCCccchhhHHHHHHHhhcC
Q 009568          242 VRPALPALAQLVH----SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG-HPSPSVLIPALRTVGNIVTG  316 (532)
Q Consensus       242 ~~~~l~~L~~lL~----~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~al~~L~nl~~~  316 (532)
                      ...+.|.++...+    .+||+++..|.-+|+.+..-+.....     .-+|.|+..|. ++++.+|..++-++|-++-.
T Consensus       917 Lg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~  991 (1251)
T KOG0414|consen  917 LGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVR  991 (1251)
T ss_pred             HHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhh
Confidence            3456677777774    45899999999999998765544333     56788999997 78999999999999999877


Q ss_pred             CcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHH
Q 009568          317 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAIS  396 (532)
Q Consensus       317 ~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~  396 (532)
                      .+...+     -.-+.|...|.+. ++.||+.|..+|++|...+.     +--.|.++.+..++.+++..++.-|-..+.
T Consensus       992 fpnlie-----~~T~~Ly~rL~D~-~~~vRkta~lvlshLILndm-----iKVKGql~eMA~cl~D~~~~IsdlAk~FF~ 1060 (1251)
T KOG0414|consen  992 FPNLIE-----PWTEHLYRRLRDE-SPSVRKTALLVLSHLILNDM-----IKVKGQLSEMALCLEDPNAEISDLAKSFFK 1060 (1251)
T ss_pred             cccccc-----hhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhhh-----hHhcccHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            664333     3456788889988 99999999999999986432     223688999999999999999998887777


Q ss_pred             HhhcCCC
Q 009568          397 NATSGGT  403 (532)
Q Consensus       397 nl~~~~~  403 (532)
                      .+...++
T Consensus      1061 Els~k~n 1067 (1251)
T KOG0414|consen 1061 ELSSKGN 1067 (1251)
T ss_pred             Hhhhccc
Confidence            7776653

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=97.15  E-value=0.032  Score=56.75  Aligned_cols=296  Identities=12%  Similarity=0.084  Sum_probs=148.6

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHH
Q 009568          120 PRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVL  199 (532)
Q Consensus       120 ~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~  199 (532)
                      ..++...+ ++ +..+.-|+..+......-|+..+..     +..++.+..+.+..||.+|+..|..+|.+++.....  
T Consensus        26 ~~il~~~k-g~-~k~K~Laaq~I~kffk~FP~l~~~A-----i~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k--   96 (556)
T PF05918_consen   26 KEILDGVK-GS-PKEKRLAAQFIPKFFKHFPDLQEEA-----INAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK--   96 (556)
T ss_dssp             HHHHHGGG-S--HHHHHHHHHHHHHHHCC-GGGHHHH-----HHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH--
T ss_pred             HHHHHHcc-CC-HHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH--
Confidence            33445444 34 7889999999999888777766544     588999999999999999999999999987765444  


Q ss_pred             hcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhc---CCCHHHHHHHHHHHHHhc-cCC
Q 009568          200 SQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH---SNDEEVLTDACWALSYLS-DGT  275 (532)
Q Consensus       200 ~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~---~~d~~v~~~a~~~L~~l~-~~~  275 (532)
                         +...|+++| ++.++.-...+-++|..|...++       .+.+..+...+.   ..|+.+++.++..|..-. .-.
T Consensus        97 ---vaDvL~QlL-~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~  165 (556)
T PF05918_consen   97 ---VADVLVQLL-QTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLK  165 (556)
T ss_dssp             ---HHHHHHHHT-T---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-
T ss_pred             ---HHHHHHHHH-hcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCc
Confidence               366788888 66666666666667766665432       455555555554   568889999888775322 111


Q ss_pred             hhHHH--HHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcC----CcchhHHHhhcCchHHHHHHh------cCCCch
Q 009568          276 NDKIQ--AVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG----DDFQTQCIITYGALPYLLGLL------THSHKK  343 (532)
Q Consensus       276 ~~~~~--~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~----~~~~~~~~~~~~~l~~L~~lL------~~~~~~  343 (532)
                      .+...  .=.+.-++..+...|.+-...--...+.+|..+-..    +....+.     +++.+....      ..+ ++
T Consensus       166 ~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qe-----Lv~ii~eQa~Ld~~f~~s-D~  239 (556)
T PF05918_consen  166 PELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQE-----LVDIIEEQADLDQPFDPS-DP  239 (556)
T ss_dssp             TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHH-----HHHHHHHHHTTTS---SS-SH
T ss_pred             HHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHH-----HHHHHHHHhccCCCCCCc-CH
Confidence            11111  112223444555666542222222333444444331    1222222     233333222      222 33


Q ss_pred             hHHHHHHHHHHH----Hhc--CCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChH
Q 009568          344 SIKKEACWTISN----ITA--GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIK  417 (532)
Q Consensus       344 ~v~~~a~~~L~n----l~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~  417 (532)
                      +.......|+..    ++.  .+...+.++.+. ++|.+-.+    ....+...+.++..++..........++. -++.
T Consensus       240 e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~k-vlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d~~~~L~-~i~~  313 (556)
T PF05918_consen  240 ESIDRLISCLRQALPFFSRGVSSSKFVNYMCEK-VLPKLSDL----PEDRKLDLLKLLAELSPFCGAQDARQLLP-SIFQ  313 (556)
T ss_dssp             HHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHH-TCCCTT---------HHHHHHHHHHHHHTT----THHHHHH-HHHH
T ss_pred             HHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHH-hcCChhhC----ChHHHHHHHHHHHHHcCCCCcccHHHHHH-HHHH
Confidence            333333333332    122  234444444443 66755554    44677788889988887665332333221 1223


Q ss_pred             HHHhhcCC--CCH----HHHHHHHHHHHHHHHhhhh
Q 009568          418 PLCDLFVC--PDP----RIVTVCLEGLENILKVGEA  447 (532)
Q Consensus       418 ~L~~lL~~--~d~----~v~~~al~~L~~l~~~~~~  447 (532)
                      .|..++-.  ..+    ..++..+.++..+....+.
T Consensus       314 ~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~  349 (556)
T PF05918_consen  314 LLKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSPN  349 (556)
T ss_dssp             HHHTTS----------HHHHHHHHHHHHHHHTT-TH
T ss_pred             HHHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCcc
Confidence            33333322  223    3566667777777665443

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.12  E-value=0.036  Score=59.96  Aligned_cols=243  Identities=12%  Similarity=0.095  Sum_probs=145.3

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hhHHHH
Q 009568          122 FVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID--HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP-RCRDLV  198 (532)
Q Consensus       122 Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~~~~~  198 (532)
                      +.....+.++..+|..+..+|..++.. +.......+  ..+...|..-+++.....+...+.+|..|....+ ...+.+
T Consensus       658 v~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i  736 (1176)
T KOG1248|consen  658 VDPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI  736 (1176)
T ss_pred             hhHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            334444443489999999999999985 222111111  1233455555555566677777777777764333 222222


Q ss_pred             HhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccC--C---C-CCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 009568          199 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR--G---K-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS  272 (532)
Q Consensus       199 ~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~--~---~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~  272 (532)
                      ..  .++-++-.+ +..+...++++..+|..++.  .   . ..+....+...++.+...+-.+...+....+-++..+.
T Consensus       737 ~k--~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il  813 (1176)
T KOG1248|consen  737 PK--LIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHIL  813 (1176)
T ss_pred             HH--HHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence            22  233333333 66678888888888888872  1   1 22223445556666555544333444433355555554


Q ss_pred             cCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHH
Q 009568          273 DGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWT  352 (532)
Q Consensus       273 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~  352 (532)
                      .........-.-.+++..+..+|.+.++.++..|+..+..++...++..-.-....+++.+..+++.. ...+|..+-..
T Consensus       814 ~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~L  892 (1176)
T KOG1248|consen  814 QEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLL  892 (1176)
T ss_pred             HHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHH
Confidence            32222222222235677777888999999999999999999988775433333335788888888777 88888888888


Q ss_pred             HHHHhc-CCHHHHHHHHH
Q 009568          353 ISNITA-GNRDQIQAVID  369 (532)
Q Consensus       353 L~nl~~-~~~~~~~~l~~  369 (532)
                      |-.++. ...+.++.++.
T Consensus       893 lekLirkfg~~eLe~~~p  910 (1176)
T KOG1248|consen  893 LEKLIRKFGAEELESFLP  910 (1176)
T ss_pred             HHHHHHHhCHHHHHhhCH
Confidence            888876 34455555543

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.11  E-value=0.0033  Score=48.28  Aligned_cols=68  Identities=18%  Similarity=0.308  Sum_probs=56.5

Q ss_pred             chhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhc-CCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009568          302 VLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLT-HSHKKSIKKEACWTISNITAGNRDQIQAVID  369 (532)
Q Consensus       302 v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~  369 (532)
                      ++...+++|+|++..+....+.+.+.|++|.++..-. +..+|.+|..|.|++.|++.++++....+.+
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            4567889999999999988888999999999988763 2337999999999999999999887655443

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=97.02  E-value=0.051  Score=55.71  Aligned_cols=193  Identities=12%  Similarity=0.146  Sum_probs=140.0

Q ss_pred             cccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcch
Q 009568          241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ  320 (532)
Q Consensus       241 ~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~  320 (532)
                      +...++|.|++++...|..++...+.-+-.....-   .+.+++..++|.+..-+.+.++.++...+.++..|+..-.  
T Consensus       327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~L---t~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~--  401 (690)
T KOG1243|consen  327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHL---TKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS--  401 (690)
T ss_pred             cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhc---CHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc--
Confidence            55789999999999999999987776665554332   2456778999999999999999999999999999885332  


Q ss_pred             hHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCC-HHHHHHHHhcCchhHHHHHHHHHHHhh
Q 009568          321 TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGL-VGPLVNLLQNAEFDIKKEAAWAISNAT  399 (532)
Q Consensus       321 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~-i~~L~~ll~~~~~~v~~~a~~aL~nl~  399 (532)
                       ...+...++..+..+-.+. +..+|-...-||+.++......    ...++ ...+.+.+.+.-..-|..+.+++....
T Consensus       402 -~~~Ln~Ellr~~ar~q~d~-~~~irtntticlgki~~~l~~~----~R~~vL~~aftralkdpf~paR~a~v~~l~at~  475 (690)
T KOG1243|consen  402 -KRNLNGELLRYLARLQPDE-HGGIRTNTTICLGKIAPHLAAS----VRKRVLASAFTRALKDPFVPARKAGVLALAATQ  475 (690)
T ss_pred             -hhhhcHHHHHHHHhhCccc-cCcccccceeeecccccccchh----hhccccchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence             2244445556666555544 7889999888998887642221    12333 445555677677788888888887665


Q ss_pred             cCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhh
Q 009568          400 SGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAE  448 (532)
Q Consensus       400 ~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~  448 (532)
                      ..-....    +...+++.++-+.-+++..++..+..++...+...++.
T Consensus       476 ~~~~~~~----va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~~  520 (690)
T KOG1243|consen  476 EYFDQSE----VANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEKV  520 (690)
T ss_pred             cccchhh----hhhhccccccccccCcccchhhHHHHHHHHHHhhhhhh
Confidence            5332211    23468889998888999999999999888888766554

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.99  E-value=0.036  Score=46.34  Aligned_cols=129  Identities=15%  Similarity=0.100  Sum_probs=99.6

Q ss_pred             HHHHHhCchHHHHHhhCCCC------ccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCC-chhHHHHHHHH
Q 009568          280 QAVIEAGVCPRLVELLGHPS------PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH-KKSIKKEACWT  352 (532)
Q Consensus       280 ~~~~~~~~l~~L~~lL~~~~------~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~  352 (532)
                      ..++..+++..|+.++.++.      ..+...++.++..|..+.- .....+...++..+...+..+. +..+...|...
T Consensus         5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~-vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI   83 (160)
T PF11841_consen    5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGI-VSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI   83 (160)
T ss_pred             HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCc-CchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence            45677789999999997755      3667778888888887543 2334566677888888887653 57899999999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHH
Q 009568          353 ISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKY  409 (532)
Q Consensus       353 L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~  409 (532)
                      |-+++..++.....+-+.=-++.|+..|+..+++++.+|...+..+...++...++.
T Consensus        84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~  140 (160)
T PF11841_consen   84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKE  140 (160)
T ss_pred             HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHH
Confidence            999998777755555555459999999999999999999999998888776655544

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=96.97  E-value=0.13  Score=49.17  Aligned_cols=195  Identities=13%  Similarity=0.118  Sum_probs=124.0

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhccCCh--hHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcC--CcchhHH
Q 009568          248 ALAQLVHSNDEEVLTDACWALSYLSDGTN--DKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG--DDFQTQC  323 (532)
Q Consensus       248 ~L~~lL~~~d~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~--~~~~~~~  323 (532)
                      -.+..+.......+..++..+..+.....  +.+.. ....++..+...++.+...-+..|+++++-++-.  .......
T Consensus        47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~-~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e  125 (309)
T PF05004_consen   47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVED-RRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE  125 (309)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH
Confidence            34445555668899999999988764322  22111 1224677788888777666667777887777644  2234445


Q ss_pred             HhhcCchHHHHHHhcCCC-chhHHHHHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHHH--Hhc----------CchhH
Q 009568          324 IITYGALPYLLGLLTHSH-KKSIKKEACWTISNITA---GNRDQIQAVIDAGLVGPLVNL--LQN----------AEFDI  387 (532)
Q Consensus       324 ~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~l--l~~----------~~~~v  387 (532)
                      +++ .+.|.|..++.+.. .+.+|..++.+|+-++.   ..++.+...++  .+..+...  .+.          +++.+
T Consensus       126 i~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l  202 (309)
T PF05004_consen  126 IFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAAL  202 (309)
T ss_pred             HHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHH
Confidence            555 67888999887652 34566667667776543   34444432222  22222111  111          13468


Q ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 009568          388 KKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEA  447 (532)
Q Consensus       388 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~  447 (532)
                      ...|+.+.+-++...+...+....+ ..++.|..+|++.|.+|+..|-++|.-++..+..
T Consensus       203 ~~aAL~aW~lLlt~~~~~~~~~~~~-~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~  261 (309)
T PF05004_consen  203 VAAALSAWALLLTTLPDSKLEDLLE-EALPALSELLDSDDVDVRIAAGEAIALLYELARD  261 (309)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence            8888887777776655544444333 4689999999999999999999999999887664

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.94  E-value=0.31  Score=50.66  Aligned_cols=285  Identities=15%  Similarity=0.147  Sum_probs=146.7

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCccc
Q 009568          162 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQ  241 (532)
Q Consensus       162 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~  241 (532)
                      .+.+-..+.+....+.-.++.++.++....+  |...-   .+..|--++ .++...++-.+..+|..++...|....  
T Consensus       247 ~~fl~s~l~~K~emV~~EaArai~~l~~~~~--r~l~p---avs~Lq~fl-ssp~~~lRfaAvRtLnkvAm~~P~~v~--  318 (865)
T KOG1078|consen  247 FPFLESCLRHKSEMVIYEAARAIVSLPNTNS--RELAP---AVSVLQLFL-SSPKVALRFAAVRTLNKVAMKHPQAVT--  318 (865)
T ss_pred             HHHHHHHHhchhHHHHHHHHHHHhhccccCH--hhcch---HHHHHHHHh-cCcHHHHHHHHHHHHHHHHHhCCcccc--
Confidence            3555556666778888888888888865443  22221   233333333 777888899999999998877543222  


Q ss_pred             ccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchh
Q 009568          242 VRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQT  321 (532)
Q Consensus       242 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~  321 (532)
                        -+-.-|-.++.+.+-.+-..|..++..-  +....+..+.+  -++.++.=+++...-+...|+++|++.   .+.  
T Consensus       319 --~cN~elE~lItd~NrsIat~AITtLLKT--G~e~sv~rLm~--qI~~fv~disDeFKivvvdai~sLc~~---fp~--  387 (865)
T KOG1078|consen  319 --VCNLDLESLITDSNRSIATLAITTLLKT--GTESSVDRLMK--QISSFVSDISDEFKIVVVDAIRSLCLK---FPR--  387 (865)
T ss_pred             --ccchhHHhhhcccccchhHHHHHHHHHh--cchhHHHHHHH--HHHHHHHhccccceEEeHHHHHHHHhh---ccH--
Confidence              1222344455555555555555444332  22333332221  122333333333334444444444433   331  


Q ss_pred             HHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009568          322 QCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSG  401 (532)
Q Consensus       322 ~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~  401 (532)
                         ...+.+..|..+|.....-+.++....++..+...+++....     .+..|+.++.+.  +...-+...|.-+...
T Consensus       388 ---k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIEDc--e~~~i~~rILhlLG~E  457 (865)
T KOG1078|consen  388 ---KHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIEDC--EFTQIAVRILHLLGKE  457 (865)
T ss_pred             ---HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHhc--cchHHHHHHHHHHhcc
Confidence               123556777788766535577778888888877765554432     344566655543  2223333344333322


Q ss_pred             CCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCC
Q 009568          402 GTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHD  481 (532)
Q Consensus       402 ~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~  481 (532)
                      +....    .....+..+...+--.+..++..++.+|.++....+...                  ....-.+.....+.
T Consensus       458 gP~a~----~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~------------------~sI~vllkRc~~D~  515 (865)
T KOG1078|consen  458 GPKAP----NPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLL------------------PSILVLLKRCLNDS  515 (865)
T ss_pred             CCCCC----CcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCcc------------------ccHHHHHHHHhcCc
Confidence            21000    001123333344444566666667777766651111110                  11234556666777


Q ss_pred             CHHHHHHHHHHHHHhC
Q 009568          482 NNEIYEKAVKILETYW  497 (532)
Q Consensus       482 ~~~v~~~a~~il~~~~  497 (532)
                      +.+|+++|...+...-
T Consensus       516 DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  516 DDEVRDRATFYLKNLE  531 (865)
T ss_pred             hHHHHHHHHHHHHHhh
Confidence            7777777766665543

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=96.91  E-value=0.025  Score=54.06  Aligned_cols=192  Identities=20%  Similarity=0.234  Sum_probs=123.4

Q ss_pred             cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhh--hCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC--Ch
Q 009568           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVI--QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASG--TS  150 (532)
Q Consensus        75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i--~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~--~~  150 (532)
                      .|...+..+.......|..|+..+.+++...  ...+.+-  ...++..+.+.++.+. .+-+..|+.+++-++-.  ..
T Consensus        44 ~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~--~~~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg~g  120 (309)
T PF05004_consen   44 KLKEAIDLLTEKSSSTREAALEALIRALSSR--YLPDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLGAG  120 (309)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcCCC
Confidence            3677888888777899999999999999753  2222222  2347788888898887 56667777777666542  22


Q ss_pred             hhHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhh---CCCchhHHHHHhcCChHHHHHH--hhh---------h
Q 009568          151 ENTKVVIDHGAVPIFVKLLASP--SDDVREQAVWALGNVA---GDSPRCRDLVLSQGALIPLLAQ--LNE---------R  214 (532)
Q Consensus       151 ~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~nl~---~~~~~~~~~~~~~~~l~~L~~l--l~~---------~  214 (532)
                      .....+++ .+.|.|...+.+.  ...+|..|+.+|+-++   +..+......++  .+..+...  ...         .
T Consensus       121 ~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~  197 (309)
T PF05004_consen  121 EDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAE  197 (309)
T ss_pred             ccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCC
Confidence            33444443 4568888888763  4667777777777664   222222111111  23322221  111         1


Q ss_pred             hhhHHHHHHHHHhhhccCCCCCCCc-ccccchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 009568          215 AKLSMLRNATWTLSNFCRGKPQPPF-DQVRPALPALAQLVHSNDEEVLTDACWALSYLS  272 (532)
Q Consensus       215 ~~~~~~~~a~~~L~~L~~~~~~~~~-~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~  272 (532)
                      +++.+...|+.+++-|...-+.... ......+|.|..+|.++|.+|+..|..+|.-+.
T Consensus       198 ~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~  256 (309)
T PF05004_consen  198 DDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY  256 (309)
T ss_pred             CccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            2356888888777777765443212 334678999999999999999999999887664

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.89  E-value=0.079  Score=48.08  Aligned_cols=184  Identities=13%  Similarity=0.174  Sum_probs=117.0

Q ss_pred             CHHHHHHHHHHHHHhccCChhHHHHHHHh-CchHHHHH-------hhCCCCc-----cchhhHHHHHHHhhcCCcchhHH
Q 009568          257 DEEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVE-------LLGHPSP-----SVLIPALRTVGNIVTGDDFQTQC  323 (532)
Q Consensus       257 d~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~L~~-------lL~~~~~-----~v~~~al~~L~nl~~~~~~~~~~  323 (532)
                      +++.++.|+.-|+.--+..++..-.+..+ |.+..|++       .+..+.-     .-...|+..+..++.+ ++.+..
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAsh-petr~~   86 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASH-PETRMP   86 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcC-hHHHHH
Confidence            56778888877776655555543333332 54444433       2333221     2234466666677774 446678


Q ss_pred             HhhcCchHHHHHHhcCCC----chhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009568          324 IITYGALPYLLGLLTHSH----KKSIKKEACWTISNITA-GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNA  398 (532)
Q Consensus       324 ~~~~~~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl  398 (532)
                      ++++++.-.|...|+...    -+.+|-.+.++++.+.. ++++.+..+++.+++|..++.|+.++.-.+..|...+..+
T Consensus        87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI  166 (262)
T PF04078_consen   87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI  166 (262)
T ss_dssp             HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            899999888888886541    25688899999999987 6788889999999999999999999988999999999998


Q ss_pred             hcCCCHHHHHHHHHc--------CChHHHHh-hcCCCCHHHHHHHHHHHHHHHH
Q 009568          399 TSGGTHEQIKYLVRE--------GCIKPLCD-LFVCPDPRIVTVCLEGLENILK  443 (532)
Q Consensus       399 ~~~~~~~~~~~l~~~--------~~l~~L~~-lL~~~d~~v~~~al~~L~~l~~  443 (532)
                      ...  .....++++.        .++..++. +.+.+++.+.+.++.|...+..
T Consensus       167 L~d--d~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsd  218 (262)
T PF04078_consen  167 LLD--DVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSD  218 (262)
T ss_dssp             HHS--HHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTT
T ss_pred             Hcc--hhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcc
Confidence            873  3444443321        12333332 3345677777777777666654

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=96.88  E-value=0.0062  Score=63.66  Aligned_cols=157  Identities=17%  Similarity=0.185  Sum_probs=112.7

Q ss_pred             ccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchh
Q 009568          242 VRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQT  321 (532)
Q Consensus       242 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~  321 (532)
                      ...++|.++..+.+.+...+..-+.+|.+...+-+...-.---..++|.|++.|+-++..++..++.++.-+....+...
T Consensus       865 F~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~  944 (1030)
T KOG1967|consen  865 FCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ  944 (1030)
T ss_pred             HHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence            36788999999987777888888888888877655421111122578888888999999999999999998887655433


Q ss_pred             HHHhhcCchHHHHHHhcCCCc--hhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhh
Q 009568          322 QCIITYGALPYLLGLLTHSHK--KSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNAT  399 (532)
Q Consensus       322 ~~~~~~~~l~~L~~lL~~~~~--~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~  399 (532)
                      ..-++ .++|.++.+-.+..+  ..||..|..+|..++...|...-.-....++..|...|+++..-||++|..+=.+..
T Consensus       945 t~~~~-Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~ 1023 (1030)
T KOG1967|consen  945 TEHLS-TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWY 1023 (1030)
T ss_pred             hHHHh-HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhh
Confidence            32222 567777777766622  578999999999999833332222233447788888888888889999988765543

>PRK14707 hypothetical protein; Provisional

Probab=96.87  E-value=1.4  Score=51.19  Aligned_cols=402  Identities=16%  Similarity=0.109  Sum_probs=212.0

Q ss_pred             HHHHHhhhc--CCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568           76 LPAMVAGVW--SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (532)
Q Consensus        76 l~~lv~~L~--s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  153 (532)
                      +.-+++..+  .++...+ .++..|...+..+ ....+.+-..|+...|-.+-+-+++++.+..+...-..++. .+..+
T Consensus       165 ~~lllNafSKw~~~~~c~-~aa~~la~~~~~~-d~~~~~~~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~-~~~l~  241 (2710)
T PRK14707        165 ISLALNAFSKWSDNPDCQ-AVAPRFAALVASD-DRLRSAMDAQGVATVLNALCKWPDTPDCGNAVSALAERLAD-ESRLR  241 (2710)
T ss_pred             HHHHHHHhhcCCCCchHH-HHHHHHHHHhcCC-hhhhcccchHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcC-cHHHH
Confidence            344555444  2344444 4444554444432 23333343333333333344456656766655555455555 44433


Q ss_pred             HHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhh-hcc
Q 009568          154 KVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLS-NFC  231 (532)
Q Consensus       154 ~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~-~L~  231 (532)
                      . -++...+...+..|+. ++...-..++.+|..=..+.+..+..+-..+ +...++-|.+-.+..+.+.+...|. .|.
T Consensus       242 ~-~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q~-vanalNalSKwpd~~vc~~Aa~~la~rl~  319 (2710)
T PRK14707        242 N-ELKPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDPIN-VTQALNALSKWADLPVCAEAAIALAERLA  319 (2710)
T ss_pred             H-hCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHHH-HHHHHhhhhcCCCchHHHHHHHHHHHHHh
Confidence            3 3344456666666666 5554555555544433334455555443333 4444555556667777666665554 444


Q ss_pred             CCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhh-CCCCccchhhHHHHH
Q 009568          232 RGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-GHPSPSVLIPALRTV  310 (532)
Q Consensus       232 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~al~~L  310 (532)
                      .+..........++-..|..+-+-+|..+-..+..+|..-...+++..+.+ +...+..+++-| +.++...-..+...|
T Consensus       320 ~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l-~~q~~a~~lNalsKWp~~~~c~~aa~~L  398 (2710)
T PRK14707        320 DDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDL-EPQGVSSVLNALSKWPDTPVCAAAASAL  398 (2710)
T ss_pred             ccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhccc-chhHHHHHHhhhhcCCCchHHHHHHHHH
Confidence            432212222222333344444445666666666666654443444443333 333444444544 446655555555555


Q ss_pred             HHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHH
Q 009568          311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKE  390 (532)
Q Consensus       311 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~  390 (532)
                      ..=..++.+..+. ++...+..+++.|+.-.+..+...++..|.--..++.+..+.+--.++...|-.+-+.+|..+...
T Consensus       399 A~~l~~d~~l~~~-~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~  477 (2710)
T PRK14707        399 AEHVVDDLELRKG-LDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQ  477 (2710)
T ss_pred             HHHhccChhhhhh-cchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHH
Confidence            5544455545443 444555555555554336677777777777666666665544443444445544555678788888


Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhcc
Q 009568          391 AAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEG  470 (532)
Q Consensus       391 a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  470 (532)
                      |+.+|..-... +++..+.|--.++...|-.+-+.+|......++..|..=+-...             .....|...+.
T Consensus       478 aa~~La~~l~~-~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~~-------------~l~~~~~~~~~  543 (2710)
T PRK14707        478 TASALAARLAH-ERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVDEL-------------QLRKAFDAHQV  543 (2710)
T ss_pred             HHHHHHHHhcc-cHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhccch-------------hhhhhhhhHHH
Confidence            88887765554 44455555445566667666677776644444333322221111             12344444555


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009568          471 LEKIENLQSHDNNEIYEKAVKILETYWL  498 (532)
Q Consensus       471 ~~~l~~L~~~~~~~v~~~a~~il~~~~~  498 (532)
                      ...+..|..+++.+....|..-|...+-
T Consensus       544 ~~~lnalSKwp~s~~C~~A~~~iA~~l~  571 (2710)
T PRK14707        544 VNTLKALSKWPDKQLCAVAASGLAERLA  571 (2710)
T ss_pred             HHHHHhhhcCCchhHHHHHHHHHHHHhh
Confidence            6677888888888877777766666554

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.84  E-value=0.041  Score=57.42  Aligned_cols=219  Identities=10%  Similarity=0.058  Sum_probs=138.7

Q ss_pred             hhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHH
Q 009568          213 ERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV  292 (532)
Q Consensus       213 ~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~  292 (532)
                      .++.+.++..++..|..+.+...........+++......+.+.|+-+--.|+..+..+|+-.+        ..++|.+.
T Consensus       737 ~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~--------e~il~dL~  808 (982)
T KOG4653|consen  737 HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP--------EDILPDLS  808 (982)
T ss_pred             cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc--------hhhHHHHH
Confidence            4455678889999999999876555566668899999999999999999999998888875533        35677777


Q ss_pred             Hhh-CCC---CccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 009568          293 ELL-GHP---SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVI  368 (532)
Q Consensus       293 ~lL-~~~---~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~  368 (532)
                      ..- +..   ..+.+...-.++++++..-.+......+ -++..++..+.++ +...|..++..++++|.-..-.....+
T Consensus       809 e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrep-d~~~RaSS~a~lg~Lcq~~a~~vsd~~  886 (982)
T KOG4653|consen  809 EEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREP-DHEFRASSLANLGQLCQLLAFQVSDFF  886 (982)
T ss_pred             HHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCc-hHHHHHhHHHHHHHHHHHHhhhhhHHH
Confidence            743 222   1233444446666666543333222222 4566777777877 888899999999999874332222222


Q ss_pred             HcCCHHHHHHHHhc-CchhHHHHHHHHHHHhhcCCCHHHHHHH--HHcCChHHHHhhcCC-CCHHHHHHHHHHHHHHH
Q 009568          369 DAGLVGPLVNLLQN-AEFDIKKEAAWAISNATSGGTHEQIKYL--VREGCIKPLCDLFVC-PDPRIVTVCLEGLENIL  442 (532)
Q Consensus       369 ~~~~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~l--~~~~~l~~L~~lL~~-~d~~v~~~al~~L~~l~  442 (532)
                      . .++..++.+... +.+-+|+.|+..+..+..+-..+..+.+  .-.+....+..+... +|..++..+..++..+-
T Consensus       887 ~-ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~  963 (982)
T KOG4653|consen  887 H-EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQ  963 (982)
T ss_pred             H-HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence            1 244555555544 4788999999999999886554444432  122344444444443 33444444544544443

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.81  E-value=0.023  Score=58.83  Aligned_cols=212  Identities=15%  Similarity=0.081  Sum_probs=139.5

Q ss_pred             ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (532)
Q Consensus        74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  153 (532)
                      +....++.+..-+.+...+.+..+|..-........      ..+++.+.+.+.......-..+++.+++|+++.+...+
T Consensus       504 ~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~~------~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r  577 (748)
T KOG4151|consen  504 GGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGERS------YEVVKPLDSALHNDEKGLENFEALEALTNLASISESDR  577 (748)
T ss_pred             cHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCch------hhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhH
Confidence            455666666666666667777777662222111111      23566666666654323446788999999999888888


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcC-ChHHHHHHhhhhhhhHHHHHHHHHhhhccC
Q 009568          154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQG-ALIPLLAQLNERAKLSMLRNATWTLSNFCR  232 (532)
Q Consensus       154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~-~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~  232 (532)
                      ..++..-.++.+-.++...++.++..++..+.||.....-+...+.+.. .++.....+ ...+......++.++..+..
T Consensus       578 ~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~-e~~~E~~~lA~a~a~a~I~s  656 (748)
T KOG4151|consen  578 QKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNL-EVADEKFELAGAGALAAITS  656 (748)
T ss_pred             HHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHH-HhhhhHHhhhccccccchhh
Confidence            8888887888877778888999999999999999876655555566633 344444444 45666666666666664444


Q ss_pred             CC-CCCC-cccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHH
Q 009568          233 GK-PQPP-FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV  292 (532)
Q Consensus       233 ~~-~~~~-~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~  292 (532)
                      .. .... ..........+..++.+.+++++...+..+.++.....+....+.....++.+.
T Consensus       657 v~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~  718 (748)
T KOG4151|consen  657 VVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLS  718 (748)
T ss_pred             cchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHH
Confidence            33 1112 333455667888899999999999999999886665555555555555444443

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.79  E-value=0.086  Score=46.92  Aligned_cols=140  Identities=11%  Similarity=0.187  Sum_probs=101.8

Q ss_pred             cchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCC----CchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHH
Q 009568          301 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS----HKKSIKKEACWTISNITA-GNRDQIQAVIDAGLVGP  375 (532)
Q Consensus       301 ~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~----~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~  375 (532)
                      .-...|+..+..++++.+ .+..++++.+--.+..+|...    ..+.+|-.+.++|+.+.. ++.+.+..++..+++|.
T Consensus        94 nRVcnaL~LlQcvASHpd-Tr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPl  172 (293)
T KOG3036|consen   94 NRVCNALALLQCVASHPD-TRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPL  172 (293)
T ss_pred             chHHHHHHHHHHHhcCcc-hHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHH
Confidence            344567777777776555 666788888777777777432    246789999999999997 67788888889999999


Q ss_pred             HHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHH--------cCChH-HHHhhcCCCCHHHHHHHHHHHHHHHH
Q 009568          376 LVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVR--------EGCIK-PLCDLFVCPDPRIVTVCLEGLENILK  443 (532)
Q Consensus       376 L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~--------~~~l~-~L~~lL~~~d~~v~~~al~~L~~l~~  443 (532)
                      .++.++.++...+.-|...+..+....  ....|+++        .-++. .+..+.+.+++.+.+.++.+..++..
T Consensus       173 CLrime~GSelSKtvA~fIlqKIlldD--~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd  247 (293)
T KOG3036|consen  173 CLRIMESGSELSKTVATFILQKILLDD--VGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD  247 (293)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHhhcc--ccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence            999999999999999999999887743  22333222        01222 33445567888888888888777753

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=96.76  E-value=0.072  Score=54.25  Aligned_cols=251  Identities=13%  Similarity=0.089  Sum_probs=134.0

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCccccc
Q 009568          164 IFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVR  243 (532)
Q Consensus       164 ~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~  243 (532)
                      .++...+ .+...+..|+..+.....+-|...+.     ++..++.++ .+.+..++..|+..|..+|.+.    ...+.
T Consensus        27 ~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLc-EDed~~iR~~aik~lp~~ck~~----~~~v~   95 (556)
T PF05918_consen   27 EILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLC-EDEDVQIRKQAIKGLPQLCKDN----PEHVS   95 (556)
T ss_dssp             HHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHH-T-SSHHHHHHHHHHGGGG--T------T-HH
T ss_pred             HHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhHHHHHHhH----HHHHh
Confidence            3444444 57889999999999999988887666     478899999 7889999999999999999874    24556


Q ss_pred             chHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhC---CCCccchhhHHHHHHHhhc-CCcc
Q 009568          244 PALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG---HPSPSVLIPALRTVGNIVT-GDDF  319 (532)
Q Consensus       244 ~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~---~~~~~v~~~al~~L~nl~~-~~~~  319 (532)
                      .+..+|+++|.++++.-...+=++|..+...++.        +.+..++..+.   ..+..+|..++..|..=.. -...
T Consensus        96 kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~  167 (556)
T PF05918_consen   96 KVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPE  167 (556)
T ss_dssp             HHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TT
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHH
Confidence            7888999999999887777777777766644332        22333333332   4567788888877754322 1111


Q ss_pred             hhH--HHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc----CCHHHHHHHHHcCCHHHHHHHH------hcCchhH
Q 009568          320 QTQ--CIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA----GNRDQIQAVIDAGLVGPLVNLL------QNAEFDI  387 (532)
Q Consensus       320 ~~~--~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~----~~~~~~~~l~~~~~i~~L~~ll------~~~~~~v  387 (532)
                      ...  .-.+.-++..+-++|.+- ...--.....+|..+-.    .+....+.+++     .+....      ...+++.
T Consensus       168 ~~~p~~E~e~~i~~~ikkvL~DV-TaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~-----ii~eQa~Ld~~f~~sD~e~  241 (556)
T PF05918_consen  168 LLTPQKEMEEFIVDEIKKVLQDV-TAEEFELFMSLLKSLKIYGGKQTIEGRQELVD-----IIEEQADLDQPFDPSDPES  241 (556)
T ss_dssp             TS---HHHHHHHHHHHHHHCTT---HHHHHHHHHHHHTSGG---GSSHHHHHHHHH-----HHHHHHTTTS---SSSHHH
T ss_pred             HhhchHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhCccccccCChHHHHHHHH-----HHHHHhccCCCCCCcCHHH
Confidence            111  112223445566666553 33333334445555443    24444444443     222222      2234444


Q ss_pred             HHHHHHHHHHh----hcCC-CHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 009568          388 KKEAAWAISNA----TSGG-THEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV  444 (532)
Q Consensus       388 ~~~a~~aL~nl----~~~~-~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~  444 (532)
                      ....+.++..-    ..+. +.....++++ .++|.+-++    ++..+...|..+..+..+
T Consensus       242 Idrli~C~~~Alp~fs~~v~Sskfv~y~~~-kvlP~l~~l----~e~~kl~lLk~lAE~s~~  298 (556)
T PF05918_consen  242 IDRLISCLRQALPFFSRGVSSSKFVNYMCE-KVLPKLSDL----PEDRKLDLLKLLAELSPF  298 (556)
T ss_dssp             HHHHHHHHHHHGGG-BTTB--HHHHHHHHH-HTCCCTT---------HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhHHhcCCCChHHHHHHHHH-HhcCChhhC----ChHHHHHHHHHHHHHcCC
Confidence            44444444331    2221 4456666655 366655554    333333444555444443

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.65  E-value=0.11  Score=46.15  Aligned_cols=145  Identities=12%  Similarity=0.141  Sum_probs=103.7

Q ss_pred             hHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCC----CCHHHHHHHHHHHHHHhc-CChhhHHHHHhCCCh
Q 009568           88 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE----DYPQLQFEAAWALTNIAS-GTSENTKVVIDHGAV  162 (532)
Q Consensus        88 ~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~----~~~~~~~~a~~~L~~l~~-~~~~~~~~i~~~g~i  162 (532)
                      ..-...|+..|..+++.  .+....+.++.+=-.|-.+|...    ...-+|..++.+++.+.. ++.+....+...++|
T Consensus        93 snRVcnaL~LlQcvASH--pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIV  170 (293)
T KOG3036|consen   93 SNRVCNALALLQCVASH--PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIV  170 (293)
T ss_pred             cchHHHHHHHHHHHhcC--cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhH
Confidence            33455677888888875  45566666665544445555432    236799999999999987 456677778889999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHh-------cCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC
Q 009568          163 PIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLS-------QGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  234 (532)
Q Consensus       163 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~-------~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~  234 (532)
                      |..++.+..+++.-+..|..++..|..++....-.+..       ...+..++..+.+.++..+...++.+..+|+.+.
T Consensus       171 PlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp  249 (293)
T KOG3036|consen  171 PLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP  249 (293)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence            99999999999999999999999998776543222111       1134444444446678888999999999998873

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.63  E-value=0.007  Score=47.84  Aligned_cols=70  Identities=17%  Similarity=0.307  Sum_probs=57.7

Q ss_pred             ChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHH
Q 009568          415 CIKPLCDLFV-CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKIL  493 (532)
Q Consensus       415 ~l~~L~~lL~-~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il  493 (532)
                      ++..|+.+|. +.|+.++.+|+.=|..+++..+..             ...+++.|+-+.+..|+.|+|++|+..|...+
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g-------------r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~av  110 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG-------------RNIIEKLGAKERVMELMNHEDPEVRYEALLAV  110 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG-------------HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhH-------------HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHH
Confidence            5788899994 567888889999999999876543             66788999999999999999999999999988


Q ss_pred             HHhC
Q 009568          494 ETYW  497 (532)
Q Consensus       494 ~~~~  497 (532)
                      .++.
T Consensus       111 Qklm  114 (119)
T PF11698_consen  111 QKLM  114 (119)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8763

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.62  E-value=0.12  Score=46.84  Aligned_cols=173  Identities=16%  Similarity=0.168  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCC-----ccchhhHHHHHHHhhcCCc-chhHHHhhcCchHHHH
Q 009568          261 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS-----PSVLIPALRTVGNIVTGDD-FQTQCIITYGALPYLL  334 (532)
Q Consensus       261 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-----~~v~~~al~~L~nl~~~~~-~~~~~~~~~~~l~~L~  334 (532)
                      ..+++..+..++.. ++....++++.+.-.|.++|...+     +.+|..++.++|.++..++ +....+++..++|..+
T Consensus        67 VcnaLaLlQ~vAsh-petr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcL  145 (262)
T PF04078_consen   67 VCNALALLQCVASH-PETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCL  145 (262)
T ss_dssp             HHHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHH
T ss_pred             HHHHHHHHHHHHcC-hHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHH
Confidence            34445455555654 555578999999989999986543     4578899999999998655 4567788999999999


Q ss_pred             HHhcCCCchhHHHHHHHHHHHHhcC---------CHHHHHHHHHcCCHHHHHHHH-hcCchhHHHHHHHHHHHhhcCCCH
Q 009568          335 GLLTHSHKKSIKKEACWTISNITAG---------NRDQIQAVIDAGLVGPLVNLL-QNAEFDIKKEAAWAISNATSGGTH  404 (532)
Q Consensus       335 ~lL~~~~~~~v~~~a~~~L~nl~~~---------~~~~~~~l~~~~~i~~L~~ll-~~~~~~v~~~a~~aL~nl~~~~~~  404 (532)
                      +.+..+ +.--|..|.+++..+..+         +++....+..  ++..++..+ ...++++-+.+.++-..++.+.  
T Consensus       146 r~me~G-selSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~--vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp--  220 (262)
T PF04078_consen  146 RIMEFG-SELSKTVATFILQKILLDDVGLNYICQTAERFFAVAM--VLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP--  220 (262)
T ss_dssp             HHHHHS--HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHH--HHHHHHHHHHHS--HHHHHHHHHHHHHHTTST--
T ss_pred             HHHHhc-cHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHH--HHHHHHHHHccCCChhHHHHHHHHHHHHccCH--
Confidence            999988 888888899998877653         3333333322  344444433 4458889999999999998853  


Q ss_pred             HHHHHHHHcCChHHHHhh----cCCCCHHHHHHHHHHHHH
Q 009568          405 EQIKYLVREGCIKPLCDL----FVCPDPRIVTVCLEGLEN  440 (532)
Q Consensus       405 ~~~~~l~~~~~l~~L~~l----L~~~d~~v~~~al~~L~~  440 (532)
                      ..+..+.. ...+.|.+-    +-..|+.+.......+.+
T Consensus       221 rar~aL~~-~LP~~Lrd~~f~~~l~~D~~~k~~l~qLl~n  259 (262)
T PF04078_consen  221 RAREALRQ-CLPDQLRDGTFSNILKDDPSTKRWLQQLLSN  259 (262)
T ss_dssp             THHHHHHH-HS-GGGTSSTTTTGGCS-HHHHHHHHHHHHH
T ss_pred             HHHHHHHH-hCcHHHhcHHHHHHHhcCHHHHHHHHHHHHH
Confidence            33444332 222222211    112466666655554444

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.61  E-value=0.054  Score=45.33  Aligned_cols=126  Identities=14%  Similarity=0.091  Sum_probs=97.9

Q ss_pred             hHHHHHhcCChHHHHHHhhhhhh-----hHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCC--CHHHHHHHHH
Q 009568          194 CRDLVLSQGALIPLLAQLNERAK-----LSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN--DEEVLTDACW  266 (532)
Q Consensus       194 ~~~~~~~~~~l~~L~~ll~~~~~-----~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~  266 (532)
                      +...++..+++..|++++..+..     .++...++.++..|..+.-.........++..++..+...  |..+...++.
T Consensus         3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa   82 (160)
T PF11841_consen    3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA   82 (160)
T ss_pred             hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence            34567788899999999965442     4788888899999888753333344456677777777643  7889999999


Q ss_pred             HHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcc
Q 009568          267 ALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDF  319 (532)
Q Consensus       267 ~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~  319 (532)
                      .|-+++.+++.....+.+.=-++.|+.+|..+++.++..++..+..|....++
T Consensus        83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~  135 (160)
T PF11841_consen   83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD  135 (160)
T ss_pred             HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence            99999998888777777766789999999999999999999888887766553

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=96.58  E-value=0.071  Score=51.93  Aligned_cols=147  Identities=12%  Similarity=0.148  Sum_probs=101.6

Q ss_pred             ChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHH-HhccCChhHHHH
Q 009568          203 ALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALS-YLSDGTNDKIQA  281 (532)
Q Consensus       203 ~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~-~l~~~~~~~~~~  281 (532)
                      ++..++..|.++.+...+..|+..|..+|+..+..-+....-.+..++..-.+.++++...|..+.. -++...+..   
T Consensus       330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~---  406 (516)
T KOG2956|consen  330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ---  406 (516)
T ss_pred             HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh---
Confidence            4566777776668889999999999999999776666555666666666666666666555554433 333333322   


Q ss_pred             HHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 009568          282 VIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (532)
Q Consensus       282 ~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  358 (532)
                           -+..+..++...+......++..+..++..-....-..+-..+.|.+++...+. +..||+.|++||..+..
T Consensus       407 -----~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~-SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  407 -----CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDST-SSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             -----HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence                 123344444446667777888888888876553322233347899999999998 99999999999988864

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.52  E-value=0.031  Score=58.25  Aligned_cols=227  Identities=13%  Similarity=0.134  Sum_probs=142.3

Q ss_pred             hhhccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCh
Q 009568           71 TKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTS  150 (532)
Q Consensus        71 ~~~~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~  150 (532)
                      .+.+.+...+..++++.+.++-.|+..+++++..  ......+...+++..+++.|++.+ +-+-..|+..+..+|.-  
T Consensus       724 ~~~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~--r~~~~~~~~ekvl~i~ld~Lkded-syvyLnaI~gv~~Lcev--  798 (982)
T KOG4653|consen  724 VDIEPLQEAISSLHDDQVPIKGYGLQMLRHLIEK--RKKATLIQGEKVLAIALDTLKDED-SYVYLNAIRGVVSLCEV--  798 (982)
T ss_pred             ccHHHHHHHHHHhcCCcccchHHHHHHHHHHHHh--cchhhhhhHHHHHHHHHHHhcccC-ceeeHHHHHHHHHHHHh--
Confidence            3445678888888999999999999999999974  244445567789999999999998 78888899988888873  


Q ss_pred             hhHHHHHhCCChHHHHHhh-CC---CCHHHHHHHHHHHHHhhCC-CchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHH
Q 009568          151 ENTKVVIDHGAVPIFVKLL-AS---PSDDVREQAVWALGNVAGD-SPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATW  225 (532)
Q Consensus       151 ~~~~~i~~~g~i~~L~~lL-~~---~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~  225 (532)
                            ....++|.|...- +.   ..++.+-.+..++.+++.. ++-+.....  -.+...+..+ .+++...+..++.
T Consensus       799 ------y~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~--~Li~tfl~gv-repd~~~RaSS~a  869 (982)
T KOG4653|consen  799 ------YPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA--VLINTFLSGV-REPDHEFRASSLA  869 (982)
T ss_pred             ------cchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH--HHHHHHHHhc-CCchHHHHHhHHH
Confidence                  3446778888743 32   1134444455666666522 121111111  1345555555 4567778999999


Q ss_pred             HhhhccCCCCCCCcccccchHHHHHHhhcCC-CHHHHHHHHHHHHHhccCChhHHHHHHHh---CchHHHHHhhCC-CCc
Q 009568          226 TLSNFCRGKPQPPFDQVRPALPALAQLVHSN-DEEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLGH-PSP  300 (532)
Q Consensus       226 ~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~~~~~~~~~~~~---~~l~~L~~lL~~-~~~  300 (532)
                      .++++|.-....-......++..++.+...+ ...++..|...+..+..+.....-.+...   +....+.+.... ++.
T Consensus       870 ~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd  949 (982)
T KOG4653|consen  870 NLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDD  949 (982)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchh
Confidence            9999987643222234455666666666654 56688888888888775544222222211   223333333332 344


Q ss_pred             cchhhHHHHHH
Q 009568          301 SVLIPALRTVG  311 (532)
Q Consensus       301 ~v~~~al~~L~  311 (532)
                      .++..|+.++-
T Consensus       950 ~~klhaql~le  960 (982)
T KOG4653|consen  950 GLKLHAQLCLE  960 (982)
T ss_pred             HHHHHHHHHHH
Confidence            45555555543

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.50  E-value=0.26  Score=47.12  Aligned_cols=171  Identities=16%  Similarity=0.127  Sum_probs=109.6

Q ss_pred             CcHHHHH-HhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC-CCchh
Q 009568          117 GVVPRFV-EFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAG-DSPRC  194 (532)
Q Consensus       117 g~i~~Lv-~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~-~~~~~  194 (532)
                      +++..|+ ..+.+.+ +.+|..|+.||+-.+--+.+....     .++.+...+...+..++..|+.++..+.. ++...
T Consensus        26 ~ll~~lI~P~v~~~~-~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   26 SLLDSLILPAVQSSD-PAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence            4555555 6777888 899999999999998855544333     35777777777789999999999998863 22211


Q ss_pred             HHHH-------HhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcC----CCHHHHHH
Q 009568          195 RDLV-------LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHS----NDEEVLTD  263 (532)
Q Consensus       195 ~~~~-------~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~----~d~~v~~~  263 (532)
                      -+..       ....++..+...+ .+.+++++..++..++.|.-......   ...++..|+-+.-+    ++..++..
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~  175 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFL-DSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQC  175 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence            1111       1233555666666 55688899999999999877652222   23344444333322    24556655


Q ss_pred             HHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCC
Q 009568          264 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP  298 (532)
Q Consensus       264 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~  298 (532)
                      ....+-..+..+... +..+...+++.+..+...+
T Consensus       176 L~~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  176 LSVFFPVYASSSPEN-QERLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             HHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCc
Confidence            555666666666655 4555557777777776553

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.49  E-value=0.73  Score=45.51  Aligned_cols=171  Identities=13%  Similarity=0.144  Sum_probs=96.8

Q ss_pred             HHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHH-hhCCCCccc
Q 009568          224 TWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE-LLGHPSPSV  302 (532)
Q Consensus       224 ~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~-lL~~~~~~v  302 (532)
                      ...++.+.+............++..+..-..+++..++..|+.+|++.+...++....... ..+..++. +....+.+|
T Consensus       238 ~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V  316 (533)
T KOG2032|consen  238 IAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEV  316 (533)
T ss_pred             HHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHH
Confidence            3344444444322233333444555555556777889999999999999886665554443 33444444 445567889


Q ss_pred             hhhHHHHHHHhhcCCcc--hhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc--CC--HHHHHHHHHcCCHHHH
Q 009568          303 LIPALRTVGNIVTGDDF--QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA--GN--RDQIQAVIDAGLVGPL  376 (532)
Q Consensus       303 ~~~al~~L~nl~~~~~~--~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~--~~~~~~l~~~~~i~~L  376 (532)
                      ...++.+|..+...-..  ....++  ++.-.+..++.+. ++++|..|...++.++.  |.  .+.....+..++.|.+
T Consensus       317 ~leam~~Lt~v~~~~~~~~l~~~~l--~ialrlR~l~~se-~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~ll  393 (533)
T KOG2032|consen  317 QLEAMKCLTMVLEKASNDDLESYLL--NIALRLRTLFDSE-DDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLL  393 (533)
T ss_pred             HHHHHHHHHHHHHhhhhcchhhhch--hHHHHHHHHHHhc-ChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccce
Confidence            99999888877643221  111111  2334456677777 89999999988888764  21  2222222333344433


Q ss_pred             HHHHhcCchhHHHHHHHHHHHhhc
Q 009568          377 VNLLQNAEFDIKKEAAWAISNATS  400 (532)
Q Consensus       377 ~~ll~~~~~~v~~~a~~aL~nl~~  400 (532)
                      + .+.+.++.+- .||.+....+.
T Consensus       394 l-hl~d~~p~va-~ACr~~~~~c~  415 (533)
T KOG2032|consen  394 L-HLQDPNPYVA-RACRSELRTCY  415 (533)
T ss_pred             e-eeCCCChHHH-HHHHHHHHhcC
Confidence            3 3555555443 34555444443

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.39  E-value=0.29  Score=48.22  Aligned_cols=258  Identities=14%  Similarity=0.140  Sum_probs=139.8

Q ss_pred             CCCCHHHHHHHHHHHHHhhCCCch-hHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCc-ccccchHH
Q 009568          170 ASPSDDVREQAVWALGNVAGDSPR-CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF-DQVRPALP  247 (532)
Q Consensus       170 ~~~~~~v~~~a~~~L~nl~~~~~~-~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~-~~~~~~l~  247 (532)
                      .+++..++..|+..|+|.+...|. ++..  ..-.+..++.-|.++.+.++.-.++.+|..+......... ....++.-
T Consensus       268 ~dp~a~~r~~a~r~L~~~as~~P~kv~th--~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ial  345 (533)
T KOG2032|consen  268 TDPSAKSRGMACRGLGNTASGAPDKVRTH--KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIAL  345 (533)
T ss_pred             cCchhHHHHHHHHHHHHHhccCcHHHHHh--HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHH
Confidence            347889999999999999988553 2222  2224666666665666788888888888777655422221 12233334


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHh---CchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHH
Q 009568          248 ALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCI  324 (532)
Q Consensus       248 ~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~---~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~  324 (532)
                      .+..+..+.+++.+..+...++.|+.......+...-.   +-...++-.+.++++.+ ..||+.....+..+- ..+.+
T Consensus       346 rlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~v-a~ACr~~~~~c~p~l-~rke~  423 (533)
T KOG2032|consen  346 RLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYV-ARACRSELRTCYPNL-VRKEL  423 (533)
T ss_pred             HHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHH-HHHHHHHHHhcCchh-HHHHH
Confidence            45667778899999999998888774322221222211   22333444455666544 345666555553221 11111


Q ss_pred             hhcCchHHHHHHhcCCCchhHHH-HHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCC
Q 009568          325 ITYGALPYLLGLLTHSHKKSIKK-EACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGT  403 (532)
Q Consensus       325 ~~~~~l~~L~~lL~~~~~~~v~~-~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~  403 (532)
                        .++++   +.+ +..-+..+. ..-|+ -.+....++....+..     ....++.+.-+.+|..|..--.+....-.
T Consensus       424 --~~~~q---~~l-d~~~~~~q~Fyn~~c-~~L~~i~~d~l~~~~t-----~~~~~f~sswe~vr~aavl~t~~~vd~l~  491 (533)
T KOG2032|consen  424 --YHLFQ---ESL-DTDMARFQAFYNQWC-IQLNHIHPDILMLLLT-----EDQHIFSSSWEQVREAAVLKTTRSVDSLV  491 (533)
T ss_pred             --HHHHh---hhh-HHhHHHHHHHHHHHH-HHHhhhCHHHHHHHHH-----hchhheecchHHHHHHHHHHHHHHHHHhH
Confidence              01111   111 110111111 11121 1222223333322222     12223444444566655555555555545


Q ss_pred             HHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 009568          404 HEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILK  443 (532)
Q Consensus       404 ~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~  443 (532)
                      +..+.+.-..-+...+..+...+-+++...+..++..+..
T Consensus       492 ~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~  531 (533)
T KOG2032|consen  492 RAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV  531 (533)
T ss_pred             HHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence            5555554444456778888888999999999999887764

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.39  E-value=0.0056  Score=48.37  Aligned_cols=73  Identities=18%  Similarity=0.249  Sum_probs=60.2

Q ss_pred             CchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009568          328 GALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS  400 (532)
Q Consensus       328 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~  400 (532)
                      .++..|+.+|..+.++.+..-||.-|+.++...|.....+-+.|+-..++.+|.+++++||.+|+.|+..+..
T Consensus        43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            4678899999555488889999999999999777777666678899999999999999999999999987754

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.33  E-value=0.37  Score=51.46  Aligned_cols=195  Identities=18%  Similarity=0.161  Sum_probs=119.1

Q ss_pred             HHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHH--HHHHhhcCCCH-H
Q 009568          183 ALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP--ALAQLVHSNDE-E  259 (532)
Q Consensus       183 ~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~--~L~~lL~~~d~-~  259 (532)
                      +|+++....+.....+++.+++..+...+......++...++..+.+++...+..........+.  .+-.++...+. +
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            45577777777788889999999999999766788899999999999998763333332222222  33334444444 6


Q ss_pred             HHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCc-chhHHHhhcCchHHHHHHhc
Q 009568          260 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD-FQTQCIITYGALPYLLGLLT  338 (532)
Q Consensus       260 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~-~~~~~~~~~~~l~~L~~lL~  338 (532)
                      .-..++..++.+...+++...                   ...+..+...+......-. .........-..+.+..++.
T Consensus       574 rsY~~~siLa~ll~~~~~~~~-------------------~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~  634 (699)
T KOG3665|consen  574 RSYNAASILALLLSDSEKTTE-------------------CVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILR  634 (699)
T ss_pred             HHHHHHHHHHHHHhCCCcCcc-------------------ccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhc
Confidence            777777777776654332111                   1122223222222222111 11111222222222666676


Q ss_pred             CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC-chhHHHHHHHHHH
Q 009568          339 HSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA-EFDIKKEAAWAIS  396 (532)
Q Consensus       339 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~  396 (532)
                      .+..+..+..|.|++.+++..+++..+.+.+.++++.+...-... ..+++.++...+.
T Consensus       635 ~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  693 (699)
T KOG3665|consen  635 LSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIE  693 (699)
T ss_pred             ccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhh
Confidence            665788999999999999998888777788888888877654433 3455555554443

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=96.31  E-value=0.036  Score=47.17  Aligned_cols=145  Identities=17%  Similarity=0.193  Sum_probs=102.1

Q ss_pred             hHHHHHhhC--CCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHH
Q 009568          288 CPRLVELLG--HPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQ  365 (532)
Q Consensus       288 l~~L~~lL~--~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~  365 (532)
                      +..++..|.  ...+.++..++-++..+.   + ....-....+-+.+-..+... +.+-...++.++..+.-+.++...
T Consensus         5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~-~~~~~~~~~~~~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv~~   79 (157)
T PF11701_consen    5 LDTLLTSLDMLRQPEEVRSHALVILSKLL---D-AAREEFKEKISDFIESLLDEG-EMDSLIIAFSALTALFPGPPDVGS   79 (157)
T ss_dssp             CCHHHHHHHCTTTSCCHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred             HHHHHHHhcccCCCHhHHHHHHHHHHHHH---H-HhHHHHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHhCCCHHHHH
Confidence            344555554  356788999999988885   2 222223334456666677666 666788899999999989898888


Q ss_pred             HHH-HcCCHHHHHHHHh--cCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcC-CCCHH-HHHHHHHHHHH
Q 009568          366 AVI-DAGLVGPLVNLLQ--NAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV-CPDPR-IVTVCLEGLEN  440 (532)
Q Consensus       366 ~l~-~~~~i~~L~~ll~--~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-~~d~~-v~~~al~~L~~  440 (532)
                      .++ ..|+++.+..++.  ..+..++..++.+|..-+..   +.+...+...+++.|.++++ ++++. ++..++-+|.+
T Consensus        80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d---~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID---KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS---HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            887 6788999999999  67889999999999888773   33444444567899999996 45555 67666666543

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=96.27  E-value=1.8  Score=45.10  Aligned_cols=298  Identities=15%  Similarity=0.078  Sum_probs=166.8

Q ss_pred             HHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC--------CCHHHHHHHHHHHHHhhC--CCchhHHHHHhcCChHHH
Q 009568          138 AAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS--------PSDDVREQAVWALGNVAG--DSPRCRDLVLSQGALIPL  207 (532)
Q Consensus       138 a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--------~~~~v~~~a~~~L~nl~~--~~~~~~~~~~~~~~l~~L  207 (532)
                      |+.++..+....++.  .+  .|+++.+...|..        .+..-.+-|++.++++..  +.+..-..+++.=+++.+
T Consensus       390 al~fl~~~~sKrke~--Tf--qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv  465 (970)
T COG5656         390 ALFFLIISKSKRKEE--TF--QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHV  465 (970)
T ss_pred             HHHHHHHHhcccchh--hh--hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHh
Confidence            445555554422221  12  3888999998832        234556678888887764  222222334444455555


Q ss_pred             HHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCc
Q 009568          208 LAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGV  287 (532)
Q Consensus       208 ~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~  287 (532)
                      +..+ ++...-++..+|.+++.+..+  -+.......+......++++++-.|+..|+.++..+..+.  +....+...+
T Consensus       466 ~P~f-~s~ygfL~Srace~is~~eeD--fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~--q~h~k~sahV  540 (970)
T COG5656         466 IPAF-RSNYGFLKSRACEFISTIEED--FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE--QSHEKFSAHV  540 (970)
T ss_pred             hHhh-cCcccchHHHHHHHHHHHHHh--cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch--hhhHHHHhhh
Confidence            5555 666677888999999998443  3344445567777788888888889999999998877553  2333344333


Q ss_pred             hHHHHHhh---CCCCccchhhHHHHH-HHhhcCCcchhHHHhh---cCchHHHHHHhcCCCc-----hhHHHHHHHHHHH
Q 009568          288 CPRLVELL---GHPSPSVLIPALRTV-GNIVTGDDFQTQCIIT---YGALPYLLGLLTHSHK-----KSIKKEACWTISN  355 (532)
Q Consensus       288 l~~L~~lL---~~~~~~v~~~al~~L-~nl~~~~~~~~~~~~~---~~~l~~L~~lL~~~~~-----~~v~~~a~~~L~n  355 (532)
                      .+.+-++|   +.-+.++...++..+ +..+..-......+..   ...+.....++..+.+     .+-+-.|.+.|..
T Consensus       541 p~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T  620 (970)
T COG5656         541 PETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRT  620 (970)
T ss_pred             hHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHH
Confidence            33333333   333333333333222 2222111111111111   1223333334433211     1233445555554


Q ss_pred             Hhc------CCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCH-
Q 009568          356 ITA------GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDP-  428 (532)
Q Consensus       356 l~~------~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~-  428 (532)
                      +..      ..+...+.+. ....|.+--.+.+.-.++-.+|+..+-+++... .+....  -=|+.+.+.+++.+++. 
T Consensus       621 ~~smiLSlen~p~vLk~le-~slypvi~Filkn~i~dfy~Ea~dildg~tf~s-keI~pi--mwgi~Ell~~~l~~~~t~  696 (970)
T COG5656         621 IESMILSLENRPLVLKYLE-VSLYPVISFILKNEISDFYQEALDILDGYTFMS-KEIEPI--MWGIFELLLNLLIDEITA  696 (970)
T ss_pred             HHHHHHhcccchHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHH-HHhhhh--hhHHHHHHHhcccccchh
Confidence            432      3444443333 335666656677777788889998888776531 121111  22678888888888775 


Q ss_pred             HHHHHHHHHHHHHHHhhhhh
Q 009568          429 RIVTVCLEGLENILKVGEAE  448 (532)
Q Consensus       429 ~v~~~al~~L~~l~~~~~~~  448 (532)
                      .-...+..++.|++.+|.+.
T Consensus       697 ~y~ee~~~al~nfityG~~e  716 (970)
T COG5656         697 VYSEEVADALDNFITYGKTE  716 (970)
T ss_pred             hhHHHHHHHHHHHHHhCccc
Confidence            66777888999999998654

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=96.26  E-value=0.61  Score=48.37  Aligned_cols=297  Identities=17%  Similarity=0.116  Sum_probs=164.3

Q ss_pred             HHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCC-------CCHHHHHHHHHHHHHHhc--CChhhHHHHHhCCChH
Q 009568           93 EATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE-------DYPQLQFEAAWALTNIAS--GTSENTKVVIDHGAVP  163 (532)
Q Consensus        93 ~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~-------~~~~~~~~a~~~L~~l~~--~~~~~~~~i~~~g~i~  163 (532)
                      .|+..+..+.+..     ..-.-.|+++.++..|...       +++.-.+.|++.+.++..  ....-...+.+.-+++
T Consensus       389 aal~fl~~~~sKr-----ke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~  463 (970)
T COG5656         389 AALFFLIISKSKR-----KEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVN  463 (970)
T ss_pred             HHHHHHHHHhccc-----chhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHH
Confidence            4555555554432     1122347899999998421       234555667777777765  2333344455555677


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCccc--
Q 009568          164 IFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQ--  241 (532)
Q Consensus       164 ~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~--  241 (532)
                      .++..++++.--++..++..+..+..+   .++..+-..+.+....++ ++.+..++-.|+.++.-+..+. ......  
T Consensus       464 hv~P~f~s~ygfL~Srace~is~~eeD---fkd~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~-q~h~k~sa  538 (970)
T COG5656         464 HVIPAFRSNYGFLKSRACEFISTIEED---FKDNGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNE-QSHEKFSA  538 (970)
T ss_pred             HhhHhhcCcccchHHHHHHHHHHHHHh---cccchHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhch-hhhHHHHh
Confidence            777788888888999999999998544   334444444566777777 5577788888888888888775 122222  


Q ss_pred             -ccchHHHHHHhhcCCCHHHHHHHHHHH-HHhccC----ChhHHHHHHHhCchHHHHHhhCCCC------ccchhhHHHH
Q 009568          242 -VRPALPALAQLVHSNDEEVLTDACWAL-SYLSDG----TNDKIQAVIEAGVCPRLVELLGHPS------PSVLIPALRT  309 (532)
Q Consensus       242 -~~~~l~~L~~lL~~~d~~v~~~a~~~L-~~l~~~----~~~~~~~~~~~~~l~~L~~lL~~~~------~~v~~~al~~  309 (532)
                       +.+.++.|+.+-+.-+.++...+...+ .+.+..    .++....+++ .++.....++..++      .+-+..|..+
T Consensus       539 hVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~-qFlkiaq~l~ens~d~~s~vDDKqmaasGi  617 (970)
T COG5656         539 HVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVR-QFLKIAQSLLENSSDTSSVVDDKQMAASGI  617 (970)
T ss_pred             hhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHH-HHHHHHHHHHcCCccccccccHHHHHHHHH
Confidence             223333333333333444444444333 222222    1122111111 22333333333321      1234445555


Q ss_pred             HHHhhc---CCc--chhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCc
Q 009568          310 VGNIVT---GDD--FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAE  384 (532)
Q Consensus       310 L~nl~~---~~~--~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~  384 (532)
                      |..+.+   .-+  ...-.-+.....|.+--+|++. ...+-.+|+-.+-+++-...+ +.. +--|+.+.+.+++.+..
T Consensus       618 L~T~~smiLSlen~p~vLk~le~slypvi~Filkn~-i~dfy~Ea~dildg~tf~ske-I~p-imwgi~Ell~~~l~~~~  694 (970)
T COG5656         618 LRTIESMILSLENRPLVLKYLEVSLYPVISFILKNE-ISDFYQEALDILDGYTFMSKE-IEP-IMWGIFELLLNLLIDEI  694 (970)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhhhHHHHH-hhh-hhhHHHHHHHhcccccc
Confidence            544432   111  1111223446677777777777 778888999988887653222 111 11245555555555554


Q ss_pred             -hhHHHHHHHHHHHhhcCCC
Q 009568          385 -FDIKKEAAWAISNATSGGT  403 (532)
Q Consensus       385 -~~v~~~a~~aL~nl~~~~~  403 (532)
                       ...-.++.-++.|+...|.
T Consensus       695 t~~y~ee~~~al~nfityG~  714 (970)
T COG5656         695 TAVYSEEVADALDNFITYGK  714 (970)
T ss_pred             hhhhHHHHHHHHHHHHHhCc
Confidence             3667888999999988774

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.18  E-value=0.32  Score=50.06  Aligned_cols=108  Identities=19%  Similarity=0.179  Sum_probs=80.2

Q ss_pred             cccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcch
Q 009568          241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ  320 (532)
Q Consensus       241 ~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~  320 (532)
                      .+.+.+..+++...+++..|+..+|..|..+....... ...+-.++...+...+.+..+.||..|+.+|+.+=..+...
T Consensus        82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~ei-dd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de  160 (892)
T KOG2025|consen   82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEI-DDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE  160 (892)
T ss_pred             HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcccccc-CHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC
Confidence            56777778888888999999999999999998743332 22333367777888888899999999999999987322211


Q ss_pred             hHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHH
Q 009568          321 TQCIITYGALPYLLGLLTHSHKKSIKKEACWTIS  354 (532)
Q Consensus       321 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~  354 (532)
                           +..+...+..+++...+++||+.|...+.
T Consensus       161 -----e~~v~n~l~~liqnDpS~EVRRaaLsnI~  189 (892)
T KOG2025|consen  161 -----ECPVVNLLKDLIQNDPSDEVRRAALSNIS  189 (892)
T ss_pred             -----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence                 23456678888876658999998866554

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=96.01  E-value=0.24  Score=50.67  Aligned_cols=172  Identities=19%  Similarity=0.134  Sum_probs=118.1

Q ss_pred             cCCChHHHHHHHHHHH--HHhcCCCCCchhHhhhCCcHHHHHHhhcC---CCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 009568           84 WSDDSSLQLEATTQFR--KLLSIERSPPIEEVIQSGVVPRFVEFLMR---EDYPQLQFEAAWALTNIASGTSENTKVVID  158 (532)
Q Consensus        84 ~s~~~~~~~~a~~~l~--~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~---~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~  158 (532)
                      ....++....|...++  .++.+++      -+-..+-|...+...+   .+++.++..|.-+|..+.+-+.+.+..   
T Consensus       863 ggtsEddf~da~~fikE~ElLyGek------svLs~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~e---  933 (1128)
T COG5098         863 GGTSEDDFVDAFFFIKEKELLYGEK------SVLSNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCSE---  933 (1128)
T ss_pred             cCCCHHHHHHHHHHHHHHHHhhchh------HHHhhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHHH---
Confidence            3333444455555554  3444431      1122345556666654   124899999999999987756555443   


Q ss_pred             CCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCC
Q 009568          159 HGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP  237 (532)
Q Consensus       159 ~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~  237 (532)
                        -+|.|+..+. +++|.+|.+|+-.|+.++..-....+.     .-..|.+-| .+.+..+++.|..++.+|.-..   
T Consensus       934 --hlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de-----~t~yLyrrL-~De~~~V~rtclmti~fLilag--- 1002 (1128)
T COG5098         934 --HLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADE-----HTHYLYRRL-GDEDADVRRTCLMTIHFLILAG--- 1002 (1128)
T ss_pred             --HHHHHHHHHhhCCCcceeccceeeccccceehhhhhHH-----HHHHHHHHh-cchhhHHHHHHHHHHHHHHHcc---
Confidence              3589999887 699999999999999876432222121     245566666 6778899999999999887543   


Q ss_pred             CcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh
Q 009568          238 PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN  276 (532)
Q Consensus       238 ~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~  276 (532)
                       ...++|-++.++.+|.++|.++..-|-..+..++....
T Consensus      1003 -q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdN 1040 (1128)
T COG5098        1003 -QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDN 1040 (1128)
T ss_pred             -ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhccc
Confidence             34568889999999999999998888778877775544

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=96.00  E-value=0.066  Score=38.44  Aligned_cols=66  Identities=24%  Similarity=0.356  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC-chhHHHHHHHHHHHhhcCCCHHHHHHHHHcC
Q 009568          346 KKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA-EFDIKKEAAWAISNATSGGTHEQIKYLVREG  414 (532)
Q Consensus       346 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~  414 (532)
                      .|.|.|++++++.. +..+..+.+.++++.++++.... ...+|-.|.++|+-++.  +.+..+.|.+.|
T Consensus         4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~--T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS--TEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC--CHHHHHHHHHcC
Confidence            57899999999874 55566666789999999998865 67899999999998887  667777666655

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=95.97  E-value=0.034  Score=53.21  Aligned_cols=114  Identities=15%  Similarity=0.172  Sum_probs=84.6

Q ss_pred             CchHH-HHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHH
Q 009568          328 GALPY-LLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQ  406 (532)
Q Consensus       328 ~~l~~-L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~  406 (532)
                      +++.. +...+.+. ++.+|..|..+||-++--+.+....     .++.+...+..++..++..|+.++..+........
T Consensus        26 ~ll~~lI~P~v~~~-~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   26 SLLDSLILPAVQSS-DPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence            34434 34777888 8999999999999998755443222     45677888877799999999999999876433332


Q ss_pred             HHHHH-------HcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 009568          407 IKYLV-------REGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEA  447 (532)
Q Consensus       407 ~~~l~-------~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~  447 (532)
                      .....       ...+++.+...+++.+++++..+.+++.+++-.+.-
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i  147 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRI  147 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCC
Confidence            22211       235688888999999999999999999999876643

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=95.93  E-value=1.2  Score=48.07  Aligned_cols=209  Identities=15%  Similarity=0.189  Sum_probs=123.0

Q ss_pred             hCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhh---hhhh----hHHHHHHHH
Q 009568          158 DHGAVPIFVKLLAS-----PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN---ERAK----LSMLRNATW  225 (532)
Q Consensus       158 ~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~---~~~~----~~~~~~a~~  225 (532)
                      +.|++..|+.++.+     ....+....+..|...| .-+.+|..+++.++++.|+..+.   +...    ..+.+..+.
T Consensus       115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~-Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~  193 (802)
T PF13764_consen  115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCC-KVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE  193 (802)
T ss_pred             cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHH-hhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence            56889999988876     23445555565555554 44678999999999999999885   2222    455555555


Q ss_pred             HhhhccCCCCCCCc-------------ccccchHHHHHHhhcC----CCHHHHHHHHHHHHHhccCChhHHHHHHHhCch
Q 009568          226 TLSNFCRGKPQPPF-------------DQVRPALPALAQLVHS----NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVC  288 (532)
Q Consensus       226 ~L~~L~~~~~~~~~-------------~~~~~~l~~L~~lL~~----~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l  288 (532)
                      ++-.+.........             .....-+..++..+.+    .++.+....++.|-+|+.+..+..+.+++.  +
T Consensus       194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F  271 (802)
T PF13764_consen  194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--F  271 (802)
T ss_pred             HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--H
Confidence            55444333211000             0123346666666654    368899999999999999988887766642  2


Q ss_pred             HHHHHhhCCC--CccchhhHHHHHHHhhcCCc------chhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCC
Q 009568          289 PRLVELLGHP--SPSVLIPALRTVGNIVTGDD------FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN  360 (532)
Q Consensus       289 ~~L~~lL~~~--~~~v~~~al~~L~nl~~~~~------~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~  360 (532)
                      .+.+.+=.-+  ...--...+.+++.++.+-+      ...+.+++.|++...+..|... -|..        .+.  . 
T Consensus       272 ~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~-~P~~--------~~~--~-  339 (802)
T PF13764_consen  272 KPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKH-FPSL--------KNT--D-  339 (802)
T ss_pred             HHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHh-Cccc--------ccC--C-
Confidence            2222221111  11111234677777776543      3456788889998888888655 4433        111  2 


Q ss_pred             HHHHHHHHHcCCHHHHHHHHh
Q 009568          361 RDQIQAVIDAGLVGPLVNLLQ  381 (532)
Q Consensus       361 ~~~~~~l~~~~~i~~L~~ll~  381 (532)
                      .......+....+|.++++|.
T Consensus       340 s~eWk~~l~~psLp~iL~lL~  360 (802)
T PF13764_consen  340 SPEWKEFLSRPSLPYILRLLR  360 (802)
T ss_pred             CHHHHHHhcCCcHHHHHHHHH
Confidence            223344444555666665554

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=95.91  E-value=0.39  Score=43.97  Aligned_cols=102  Identities=13%  Similarity=0.072  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHh
Q 009568          133 QLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQL  211 (532)
Q Consensus       133 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll  211 (532)
                      .+...|+.+|--++--++..+..+.....+..|+.+|.. ..+.++..++.+|..+..+++.+...+-+.+++..++.++
T Consensus       106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll  185 (257)
T PF08045_consen  106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL  185 (257)
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence            456667888888888889999999999999999999954 6789999999999999999999888999999999999999


Q ss_pred             hh-hhhhHHHHHHHHHhhhccCCC
Q 009568          212 NE-RAKLSMLRNATWTLSNFCRGK  234 (532)
Q Consensus       212 ~~-~~~~~~~~~a~~~L~~L~~~~  234 (532)
                      +. +.+.+++-.++.+|.-.....
T Consensus       186 k~~~~~~~~r~K~~EFL~fyl~~E  209 (257)
T PF08045_consen  186 KSKSTDRELRLKCIEFLYFYLMPE  209 (257)
T ss_pred             ccccccHHHhHHHHHHHHHHHccc
Confidence            63 347788888887777555443

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=95.86  E-value=2.5  Score=43.21  Aligned_cols=253  Identities=13%  Similarity=0.082  Sum_probs=136.2

Q ss_pred             ChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHH
Q 009568           87 DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV  166 (532)
Q Consensus        87 ~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~  166 (532)
                      ..+.|..+...+..++....... . ...    ..+.+.+.....++.-..-+.+|..++.+..+.  ...+.++.+.|.
T Consensus        42 p~e~R~~~~~ll~~~i~~~~~~~-~-~~R----~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~  113 (464)
T PF11864_consen   42 PSEARRAALELLIACIKRQDSSS-G-LMR----AEFFRDISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLL  113 (464)
T ss_pred             CHHHHHHHHHHHHHHHHcccccc-H-HHH----HHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHH
Confidence            45678888888888887642211 0 111    122233333322332223334444455433333  224556777777


Q ss_pred             HhhCC---------------------------CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHH
Q 009568          167 KLLAS---------------------------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSM  219 (532)
Q Consensus       167 ~lL~~---------------------------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~  219 (532)
                      ..|..                           .+.......+..+.|+...+...-+.-.-.+.+..++.+..+..++..
T Consensus       114 ~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~d  193 (464)
T PF11864_consen  114 SWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDD  193 (464)
T ss_pred             HHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHH
Confidence            76631                           022333445555666654433221211123345555556545555555


Q ss_pred             HHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCC--
Q 009568          220 LRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH--  297 (532)
Q Consensus       220 ~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--  297 (532)
                      ...++.++-.+.... ..+......++..|.......  +....+-.++.||+......       ..+..|..+|..  
T Consensus       194 i~~~L~vldaii~y~-~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~  263 (464)
T PF11864_consen  194 IEACLSVLDAIITYG-DIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPD  263 (464)
T ss_pred             HHHHHHHHHHHHHcC-cCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccC
Confidence            666777666666553 122233344555555543322  55556666778887554322       346677777732  


Q ss_pred             ----CCccchhhHHHHHHHhhcCCcchhHHHhhc---CchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 009568          298 ----PSPSVLIPALRTVGNIVTGDDFQTQCIITY---GALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (532)
Q Consensus       298 ----~~~~v~~~al~~L~nl~~~~~~~~~~~~~~---~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  358 (532)
                          .+..+..-|+..++.+..+.......-+..   -+++.+...++.. ++.+-.+....+.++..
T Consensus       264 ~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-~~~v~~eIl~~i~~ll~  330 (464)
T PF11864_consen  264 PQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-SPRVDYEILLLINRLLD  330 (464)
T ss_pred             ccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-CCeehHHHHHHHHHHHh
Confidence                234456678899999887773222222222   2788888999887 77788888888888774

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=95.77  E-value=0.017  Score=33.83  Aligned_cols=29  Identities=28%  Similarity=0.438  Sum_probs=25.8

Q ss_pred             cHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 009568          118 VVPRFVEFLMREDYPQLQFEAAWALTNIAS  147 (532)
Q Consensus       118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~  147 (532)
                      ++|.+++++++++ +++|..|+++|+.++.
T Consensus         1 llp~l~~~l~D~~-~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDPS-PEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-SS-HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCC-HHHHHHHHHHHHHHHh
Confidence            4799999999998 9999999999999875

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=95.77  E-value=0.19  Score=53.91  Aligned_cols=192  Identities=14%  Similarity=0.102  Sum_probs=129.2

Q ss_pred             chHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHh-hCCCCccchhhHHHHHHHhhcCCcchhH
Q 009568          244 PALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL-LGHPSPSVLIPALRTVGNIVTGDDFQTQ  322 (532)
Q Consensus       244 ~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l-L~~~~~~v~~~al~~L~nl~~~~~~~~~  322 (532)
                      .+-+.+..-+.+.++.-+..++..+.-.......... ....+.+..++.. +.+.+..+...++.+|.-|+........
T Consensus       253 ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~-~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~  331 (815)
T KOG1820|consen  253 KITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIV-KGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFR  331 (815)
T ss_pred             hcChHHHHhhhccchHHHHHHHHHHHHHHhccccccc-cCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhH
Confidence            3334455556678888888888888777655431101 1111333333333 3556778888999999999987654432


Q ss_pred             HHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCC
Q 009568          323 CIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGG  402 (532)
Q Consensus       323 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~  402 (532)
                      . ...++.|.++.-+... .+.++..+..++-.++..++-       ..+.+.+...+.++++.++.++...+.......
T Consensus       332 ~-~~~~v~p~lld~lkek-k~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~  402 (815)
T KOG1820|consen  332 K-YAKNVFPSLLDRLKEK-KSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKL  402 (815)
T ss_pred             H-HHHhhcchHHHHhhhc-cHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhc
Confidence            2 2337788999999887 777887777777666653322       125678888999999999999887777776543


Q ss_pred             CHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 009568          403 THEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG  445 (532)
Q Consensus       403 ~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~  445 (532)
                      ++.....-.-.++++.++....+.+.+|+.++++++..+++..
T Consensus       403 ~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~  445 (815)
T KOG1820|consen  403 GPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVH  445 (815)
T ss_pred             CCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHh
Confidence            3211111112357888888889999999999999999888754

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=95.70  E-value=0.017  Score=33.81  Aligned_cols=29  Identities=28%  Similarity=0.445  Sum_probs=25.7

Q ss_pred             chHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 009568          329 ALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (532)
Q Consensus       329 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  358 (532)
                      ++|.+.+++.++ ++.||..|+++|+.++.
T Consensus         1 llp~l~~~l~D~-~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDP-SPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-S-SHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCC-CHHHHHHHHHHHHHHHh
Confidence            478999999999 99999999999999975

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=95.68  E-value=0.09  Score=46.38  Aligned_cols=111  Identities=18%  Similarity=0.205  Sum_probs=80.0

Q ss_pred             cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcC--------CCCHHHHHHHHHHHHHHh
Q 009568           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR--------EDYPQLQFEAAWALTNIA  146 (532)
Q Consensus        75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~--------~~~~~~~~~a~~~L~~l~  146 (532)
                      ....+++.+.+.....  ..+..|+..+......-++.+++.|++..|+++|..        .....++..++.||..|.
T Consensus        67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~  144 (187)
T PF06371_consen   67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM  144 (187)
T ss_dssp             HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence            4466788887765443  566666666664322237778889999999998853        122688999999999999


Q ss_pred             cCChhhHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 009568          147 SGTSENTKVVID-HGAVPIFVKLLASPSDDVREQAVWALGNVA  188 (532)
Q Consensus       147 ~~~~~~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~  188 (532)
                      . +......++. .+++..|+..|.+++..++..++.+|+.+|
T Consensus       145 n-~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  145 N-TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             S-SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             c-cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            8 5555666665 688999999999999999999999999886

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=95.68  E-value=1.3  Score=42.99  Aligned_cols=164  Identities=17%  Similarity=0.178  Sum_probs=115.0

Q ss_pred             HHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhc-CCcchhHHHhhc-C-chHHHHHHhcCCC----c--------hh
Q 009568          280 QAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT-GDDFQTQCIITY-G-ALPYLLGLLTHSH----K--------KS  344 (532)
Q Consensus       280 ~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~-~~~~~~~~~~~~-~-~l~~L~~lL~~~~----~--------~~  344 (532)
                      +.+++.. +..+...|......+..++++.|..++. ........++.. + -.+.+.+++....    .        +.
T Consensus        51 ~~iL~~~-~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~s  129 (330)
T PF11707_consen   51 RSILQNH-LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPS  129 (330)
T ss_pred             HHHHHHH-HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcC
Confidence            3344433 7888888998888899999999999998 444555555543 1 2345566653221    1        27


Q ss_pred             HHHHHHHHHHHH-hcCCHHHHHHHH-HcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCC---CHHHHHHHHHcCChHHH
Q 009568          345 IKKEACWTISNI-TAGNRDQIQAVI-DAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGG---THEQIKYLVREGCIKPL  419 (532)
Q Consensus       345 v~~~a~~~L~nl-~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~---~~~~~~~l~~~~~l~~L  419 (532)
                      +|......+..+ ..+++.....++ +.+.+..+.+-|..+++++....+.+|..-+...   .....-.+.....+..|
T Consensus       130 iR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l  209 (330)
T PF11707_consen  130 IRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQL  209 (330)
T ss_pred             HHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHH
Confidence            888877655554 457777777777 4567889999999888999999999998644432   22333344455678899


Q ss_pred             HhhcCCCCH----HHHHHHHHHHHHHHHh
Q 009568          420 CDLFVCPDP----RIVTVCLEGLENILKV  444 (532)
Q Consensus       420 ~~lL~~~d~----~v~~~al~~L~~l~~~  444 (532)
                      ..+....++    .+...+-+.|..++..
T Consensus       210 ~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~  238 (330)
T PF11707_consen  210 ASLYSRDGEDEKSSVADLVHEFLLALCTD  238 (330)
T ss_pred             HHHhcccCCcccchHHHHHHHHHHHHhcC
Confidence            998888777    8888888888888753

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.68  E-value=0.92  Score=46.88  Aligned_cols=102  Identities=17%  Similarity=0.173  Sum_probs=74.8

Q ss_pred             CchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc--CCHHH
Q 009568          286 GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA--GNRDQ  363 (532)
Q Consensus       286 ~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~  363 (532)
                      +++.+++....+++..||..+|.+|..+.......-+.+ -.++...+..-+.+. .|.||.+|..+|+.+-.  ++++ 
T Consensus        85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~v-fn~l~e~l~~Rl~Dr-ep~VRiqAv~aLsrlQ~d~~dee-  161 (892)
T KOG2025|consen   85 GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDV-FNKLNEKLLIRLKDR-EPNVRIQAVLALSRLQGDPKDEE-  161 (892)
T ss_pred             HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHH-HHHHHHHHHHHHhcc-CchHHHHHHHHHHHHhcCCCCCc-
Confidence            667777777788899999999999999887443322333 336777777777777 89999999999999964  2222 


Q ss_pred             HHHHHHcCCHHHHHHHHhcC-chhHHHHHHHHHH
Q 009568          364 IQAVIDAGLVGPLVNLLQNA-EFDIKKEAAWAIS  396 (532)
Q Consensus       364 ~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~  396 (532)
                            ..++..+..+++++ +++||+.|+..+.
T Consensus       162 ------~~v~n~l~~liqnDpS~EVRRaaLsnI~  189 (892)
T KOG2025|consen  162 ------CPVVNLLKDLIQNDPSDEVRRAALSNIS  189 (892)
T ss_pred             ------ccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence                  23567778888775 7899988765543

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=95.63  E-value=0.06  Score=55.18  Aligned_cols=192  Identities=11%  Similarity=0.153  Sum_probs=134.0

Q ss_pred             HHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CH
Q 009568          283 IEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG-NR  361 (532)
Q Consensus       283 ~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~  361 (532)
                      +..+++|.|++++...+..+|..-+.-+-...   +...+..++..++|.+..-+.+. ++.+|..++.++..++.. +.
T Consensus       327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i---~~Lt~~~~~d~I~phv~~G~~DT-n~~Lre~Tlksm~~La~kL~~  402 (690)
T KOG1243|consen  327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYI---DHLTKQILNDQIFPHVALGFLDT-NATLREQTLKSMAVLAPKLSK  402 (690)
T ss_pred             cccchhhhHHHHhcCcchHHHHHHHHhHHHHh---hhcCHHhhcchhHHHHHhhcccC-CHHHHHHHHHHHHHHHhhhch
Confidence            44589999999999999999876665555554   34556778889999999999999 999999999999888752 22


Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCC-hHHHHhhcCCCCHHHHHHHHHHHHH
Q 009568          362 DQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGC-IKPLCDLFVCPDPRIVTVCLEGLEN  440 (532)
Q Consensus       362 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~-l~~L~~lL~~~d~~v~~~al~~L~~  440 (532)
                      .    .++..++..+.++-.+.+..+|.+...+|+.+...-.+..     ..++ ..++..-++++-..-+...+.++..
T Consensus       403 ~----~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~-----R~~vL~~aftralkdpf~paR~a~v~~l~a  473 (690)
T KOG1243|consen  403 R----NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV-----RKRVLASAFTRALKDPFVPARKAGVLALAA  473 (690)
T ss_pred             h----hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh-----hccccchhhhhhhcCCCCCchhhhhHHHhh
Confidence            1    2223344444444444577899999989988877644332     2233 4466666666666677777776665


Q ss_pred             HHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCccc
Q 009568          441 ILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDDE  503 (532)
Q Consensus       441 l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~~~~~  503 (532)
                      ..+.-+...           .+     ...+..+.-+.-++++.+...|...++.|++..+..
T Consensus       474 t~~~~~~~~-----------va-----~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~~  520 (690)
T KOG1243|consen  474 TQEYFDQSE-----------VA-----NKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEKV  520 (690)
T ss_pred             cccccchhh-----------hh-----hhccccccccccCcccchhhHHHHHHHHHHhhhhhh
Confidence            544332211           12     334567777788999999999999999998865544

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=95.61  E-value=1.3  Score=41.32  Aligned_cols=201  Identities=12%  Similarity=0.103  Sum_probs=131.1

Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH----HHHHhcCChHHHHHHhhhhhh-hHHHHHHHHHhhh
Q 009568          155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR----DLVLSQGALIPLLAQLNERAK-LSMLRNATWTLSN  229 (532)
Q Consensus       155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~----~~~~~~~~l~~L~~ll~~~~~-~~~~~~a~~~L~~  229 (532)
                      .+.++|.+..|++.+..-+-+-+..++.+..|+-...-..|    +.+..  -...+-.++....+ +++.-.+...+..
T Consensus        74 ef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t--~~e~~~~lv~~~~~~~~iaL~cg~mlrE  151 (342)
T KOG1566|consen   74 EFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLET--NPEILDNLVKGYENTPEIALTCGNMLRE  151 (342)
T ss_pred             HHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHh--CHHHHHHHHhhhccchHHHHHHHHHHHH
Confidence            56678999999999988778888888888888753322222    22211  12223333322222 5555555555555


Q ss_pred             ccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCc---hHH-HHHhhCCCCccchhh
Q 009568          230 FCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGV---CPR-LVELLGHPSPSVLIP  305 (532)
Q Consensus       230 L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~---l~~-L~~lL~~~~~~v~~~  305 (532)
                      ..+...-.........+......++.+.=++..+|..++..+.......+..++....   ++. --.++.+.+.-++..
T Consensus       152 cirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrq  231 (342)
T KOG1566|consen  152 CIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQ  231 (342)
T ss_pred             HHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHH
Confidence            4444322222333445555556666676788889999988887665555555554432   333 556678889999999


Q ss_pred             HHHHHHHhhcCCcc---hhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 009568          306 ALRTVGNIVTGDDF---QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (532)
Q Consensus       306 al~~L~nl~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  358 (532)
                      ++..+|.+.-+.+.   .++++....-+..++.+|+.+ +..++-+|..+..-..+
T Consensus       232 s~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdk-skniQ~eAFhvFKvfvA  286 (342)
T KOG1566|consen  232 SLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDK-SKNIQLEAFHVFKVFVA  286 (342)
T ss_pred             HHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCc-cccchHHHHHHHHHHhc
Confidence            99999998866552   344555557789999999998 99999999988877766

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=95.57  E-value=3.3  Score=42.41  Aligned_cols=283  Identities=14%  Similarity=0.132  Sum_probs=145.8

Q ss_pred             hHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH
Q 009568           88 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK  167 (532)
Q Consensus        88 ~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~  167 (532)
                      ...+..|+..++..+..-  + ...+.+  +....-.++.....++.|..+...|..+..+.........     ..+..
T Consensus         4 l~~R~~a~~~l~~~i~~~--~-~~~i~~--iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R-----~~fF~   73 (464)
T PF11864_consen    4 LSERIKAAEELCESIQKY--P-LSSIEE--IWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMR-----AEFFR   73 (464)
T ss_pred             HHHHHHHHHHHHHHHHhC--C-chHHHH--HHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHH-----HHHHH
Confidence            345777888888877642  1 122211  3344445666655578999999998888874433111111     11222


Q ss_pred             hhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhh--------------------------hhHHH
Q 009568          168 LLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA--------------------------KLSML  220 (532)
Q Consensus       168 lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~--------------------------~~~~~  220 (532)
                      .+.. ..++-...-+.+|..|+.++...  ...+.++.+.|...+...-                          +....
T Consensus        74 ~I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l  151 (464)
T PF11864_consen   74 DISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNL  151 (464)
T ss_pred             HHhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhH
Confidence            2232 33433445566677776666544  2246667777777663211                          11222


Q ss_pred             HHHHHHhhhccCCC-CCCCcccccchHHHHHHhhc-CCCHHHHHHHHHHHHHhccCChhHHHHHHHhC-----chHHHHH
Q 009568          221 RNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVH-SNDEEVLTDACWALSYLSDGTNDKIQAVIEAG-----VCPRLVE  293 (532)
Q Consensus       221 ~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-----~l~~L~~  293 (532)
                      ...+..+.++.+.. .......+.+++..++.+.. +..+.....++..+-.           ++..|     .++.++.
T Consensus       152 ~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vlda-----------ii~y~~iP~~sl~~~i~  220 (464)
T PF11864_consen  152 SDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDA-----------IITYGDIPSESLSPCIE  220 (464)
T ss_pred             HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH-----------HHHcCcCChHHHHHHHH
Confidence            23333333333332 11222222333333333321 1222222222222222           22222     2223333


Q ss_pred             hhCC--CCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCC-----CchhHHHHHHHHHHHHhcCCHHHHHH
Q 009568          294 LLGH--PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS-----HKKSIKKEACWTISNITAGNRDQIQA  366 (532)
Q Consensus       294 lL~~--~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~  366 (532)
                      .|-+  ........+-.++.||+...-.+       ..+..|..+|.++     .+..+.+.|...+..+..+..+....
T Consensus       221 vLCsi~~~~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~  293 (464)
T PF11864_consen  221 VLCSIVNSVSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYP  293 (464)
T ss_pred             HHhhHhcccccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcc
Confidence            3322  23367777888888888643322       2345677777321     14567788999999888765222211


Q ss_pred             HHH-c--CCHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009568          367 VID-A--GLVGPLVNLLQNAEFDIKKEAAWAISNATS  400 (532)
Q Consensus       367 l~~-~--~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~  400 (532)
                      -+. .  -+++.+...++.++..+-.+++..+.++..
T Consensus       294 ~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~  330 (464)
T PF11864_consen  294 SLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLD  330 (464)
T ss_pred             eecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence            121 1  268888999998888888888888888874

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=95.54  E-value=4.4  Score=43.70  Aligned_cols=127  Identities=13%  Similarity=0.178  Sum_probs=73.6

Q ss_pred             chhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHh
Q 009568          302 VLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQ  381 (532)
Q Consensus       302 v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~  381 (532)
                      ++..+.-+|+++|-..+...+     ..+|.|++-|.......+|.+..-+++.+|....    .+++ ..+|.+-..|.
T Consensus       947 vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT----am~d-~YiP~I~~~L~ 1016 (1529)
T KOG0413|consen  947 VRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT----AMTD-RYIPMIAASLC 1016 (1529)
T ss_pred             HHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH----HHHH-HhhHHHHHHhc
Confidence            344455556666544332222     3456666666554345566666666666654311    1222 26777877888


Q ss_pred             cCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCC--hHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 009568          382 NAEFDIKKEAAWAISNATSGGTHEQIKYLVREGC--IKPLCDLFVCPDPRIVTVCLEGLENILKVG  445 (532)
Q Consensus       382 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~--l~~L~~lL~~~d~~v~~~al~~L~~l~~~~  445 (532)
                      ++++-||+.+...|.++...+      ++.-.|.  +..+..++ +.+++++..+--++..++...
T Consensus      1017 Dp~~iVRrqt~ilL~rLLq~~------~vKw~G~Lf~Rf~l~l~-D~~edIr~~a~f~~~~vL~~~ 1075 (1529)
T KOG0413|consen 1017 DPSVIVRRQTIILLARLLQFG------IVKWNGELFIRFMLALL-DANEDIRNDAKFYISEVLQSE 1075 (1529)
T ss_pred             CchHHHHHHHHHHHHHHHhhh------hhhcchhhHHHHHHHHc-ccCHHHHHHHHHHHHHHHhhc
Confidence            888888888888888887632      2222333  33333333 456777777777777777654

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=95.53  E-value=0.53  Score=46.14  Aligned_cols=171  Identities=10%  Similarity=0.106  Sum_probs=103.7

Q ss_pred             HHHHHHH-HhhhccCCCCCCCcccccchHHHHHHhhcC-CCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhC
Q 009568          219 MLRNATW-TLSNFCRGKPQPPFDQVRPALPALAQLVHS-NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG  296 (532)
Q Consensus       219 ~~~~a~~-~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~-~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~  296 (532)
                      -+..+.. ...-+|.+.-.........++-.++..|.. .++..+..|++.|..++...+.....-.+ -++..+++.-.
T Consensus       303 ~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE-~ai~K~Leaa~  381 (516)
T KOG2956|consen  303 ERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTE-IAICKVLEAAK  381 (516)
T ss_pred             HHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHH-HHHHHHHHHHh
Confidence            3444444 333444443333333445666777788877 67888999999999999776644221111 23444555555


Q ss_pred             CCCccchhhHHHH-HHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHH
Q 009568          297 HPSPSVLIPALRT-VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG-NRDQIQAVIDAGLVG  374 (532)
Q Consensus       297 ~~~~~v~~~al~~-L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~  374 (532)
                      +..+.+...|... +.-+++..+..        .+..+..++... +...-..+...+..++.. ..+..-.++ ..+.|
T Consensus       382 ds~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~Ilt~-D~~~~~~~iKm~Tkl~e~l~~EeL~~ll-~diaP  451 (516)
T KOG2956|consen  382 DSQDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLILTA-DEPRAVAVIKMLTKLFERLSAEELLNLL-PDIAP  451 (516)
T ss_pred             CCchhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHHhcC-cchHHHHHHHHHHHHHhhcCHHHHHHhh-hhhhh
Confidence            5555555555444 44444444422        133444455445 555556666677777763 334333334 35899


Q ss_pred             HHHHHHhcCchhHHHHHHHHHHHhhc
Q 009568          375 PLVNLLQNAEFDIKKEAAWAISNATS  400 (532)
Q Consensus       375 ~L~~ll~~~~~~v~~~a~~aL~nl~~  400 (532)
                      .+++..++.+..||+.|+++|..+..
T Consensus       452 ~~iqay~S~SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  452 CVIQAYDSTSSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             HHHHHhcCchHHhhhhHHHhHHHHHH
Confidence            99999999999999999999998865

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=95.51  E-value=0.23  Score=53.31  Aligned_cols=187  Identities=14%  Similarity=0.077  Sum_probs=130.4

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccc
Q 009568          163 PIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQV  242 (532)
Q Consensus       163 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~  242 (532)
                      +.+..-+.+++..-|..++..+..+..... ........+.+..++.....+.+..+...++.+|..++..-......+.
T Consensus       256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~  334 (815)
T KOG1820|consen  256 KNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA  334 (815)
T ss_pred             hHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH
Confidence            444445556777888888888887765443 1111122344555566665777888899999999888877644455556


Q ss_pred             cchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcc-hh
Q 009568          243 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDF-QT  321 (532)
Q Consensus       243 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~-~~  321 (532)
                      ..++|.++..+......++..+..++-.++....       -..+.+.+..++.+.++.++..+...+.......+. ..
T Consensus       335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~  407 (815)
T KOG1820|consen  335 KNVFPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTV  407 (815)
T ss_pred             HhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence            7888888888888888887777666655543221       125678888999999999999988888887765552 11


Q ss_pred             HHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 009568          322 QCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (532)
Q Consensus       322 ~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  358 (532)
                      ..---.+++|.++....+. +..||..|..+++-+..
T Consensus       408 ~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k  443 (815)
T KOG1820|consen  408 EKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMK  443 (815)
T ss_pred             chhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHH
Confidence            1112236788888888888 99999999999888765

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=95.50  E-value=0.52  Score=43.17  Aligned_cols=103  Identities=23%  Similarity=0.276  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHH
Q 009568          387 IKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV-CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLV  465 (532)
Q Consensus       387 v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~  465 (532)
                      ....|+..|.-++.- .+.....+-+...+..|+++|+ ...+.+...++.+|..++-.....             ...|
T Consensus       107 li~~aL~vLQGl~LL-Hp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N-------------~r~F  172 (257)
T PF08045_consen  107 LIALALRVLQGLCLL-HPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPEN-------------QRDF  172 (257)
T ss_pred             HHHHHHHHHHHHHHc-CchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHH-------------HHHH
Confidence            345566777776665 3455566678889999999995 467889999999999998766543             5679


Q ss_pred             HHhccHHHHHHHhc--CCCHHHHHHHHHHHHHhCCCCccc
Q 009568          466 EEAEGLEKIENLQS--HDNNEIYEKAVKILETYWLEEDDE  503 (532)
Q Consensus       466 ~~~g~~~~l~~L~~--~~~~~v~~~a~~il~~~~~~~~~~  503 (532)
                      ++.+|+..+-.+..  +-+.+++-++.+.+--|+.+|...
T Consensus       173 E~~~Gl~~v~~llk~~~~~~~~r~K~~EFL~fyl~~E~~~  212 (257)
T PF08045_consen  173 EELNGLSTVCSLLKSKSTDRELRLKCIEFLYFYLMPETPS  212 (257)
T ss_pred             HHhCCHHHHHHHHccccccHHHhHHHHHHHHHHHcccCCC
Confidence            99999999999964  456779999999998888876544

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.48  E-value=1.4  Score=47.30  Aligned_cols=198  Identities=17%  Similarity=0.201  Sum_probs=118.0

Q ss_pred             HHHHhccCChhHHHHHHHhCchHHHHHhhCC-CCccchhhHHHHHHHhhcCCcchhHHHhhcCc-hHHHHHHhcCCCchh
Q 009568          267 ALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLIPALRTVGNIVTGDDFQTQCIITYGA-LPYLLGLLTHSHKKS  344 (532)
Q Consensus       267 ~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~-l~~L~~lL~~~~~~~  344 (532)
                      ++++++...++....+++.+++..+...+.. .+..++..++..++|++...+..........+ ...+..++......+
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            7778888889999999999999999999975 56778999999999999765422211111111 123333444441336


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHH-HHhhc
Q 009568          345 IKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKP-LCDLF  423 (532)
Q Consensus       345 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~-L~~lL  423 (532)
                      .-..|+.+|+.+...+++..    ..+.-+           .+......++........    .. .....+.+ +..++
T Consensus       574 rsY~~~siLa~ll~~~~~~~----~~~~r~-----------~~~~~l~e~i~~~~~~~~----~~-~~~~~f~~~~~~il  633 (699)
T KOG3665|consen  574 RSYNAASILALLLSDSEKTT----ECVFRN-----------SVNELLVEAISRWLTSEI----RV-INDRSFFPRILRIL  633 (699)
T ss_pred             HHHHHHHHHHHHHhCCCcCc----cccchH-----------HHHHHHHHHhhccCccce----ee-hhhhhcchhHHHHh
Confidence            66777777777766433211    111111           111222222222222111    00 11112233 44445


Q ss_pred             C-CCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcC-CCHHHHHHHHHHHHHhC
Q 009568          424 V-CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSH-DNNEIYEKAVKILETYW  497 (532)
Q Consensus       424 ~-~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~-~~~~v~~~a~~il~~~~  497 (532)
                      . +..+..+.+|++++.+++....+             |+..+.+.|++..++++..+ .-.++...+..+++...
T Consensus       634 ~~s~~~g~~lWal~ti~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  696 (699)
T KOG3665|consen  634 RLSKSDGSQLWALWTIKNVLEQNKE-------------YCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESCE  696 (699)
T ss_pred             cccCCCchHHHHHHHHHHHHHcChh-------------hhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhccc
Confidence            4 45577888999999999875332             68888899999999988432 35667777777776543

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=95.47  E-value=0.098  Score=52.14  Aligned_cols=151  Identities=22%  Similarity=0.315  Sum_probs=102.9

Q ss_pred             HhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHh-hCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcC
Q 009568          124 EFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKL-LASPSDDVREQAVWALGNVAGDSPRCRDLVLSQG  202 (532)
Q Consensus       124 ~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l-L~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~  202 (532)
                      +++.+.+ +-+|...+..++---.++.       ..|++..|+.. .++.+.++|+.|+-+|+-+|.+.+.         
T Consensus       523 ell~d~d-s~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~---------  585 (926)
T COG5116         523 ELLYDKD-SILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD---------  585 (926)
T ss_pred             HHhcCch-HHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------
Confidence            3444444 5666665555443333222       23677778876 6668899999999999999877654         


Q ss_pred             ChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHH
Q 009568          203 ALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAV  282 (532)
Q Consensus       203 ~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~  282 (532)
                      .+...+++|..+.+..++.-.+.+|.-.|.+..      ...++..|-.+..++..-|+..|+-+++.+.....+....-
T Consensus       586 ~lv~tvelLs~shN~hVR~g~AvaLGiacag~G------~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~  659 (926)
T COG5116         586 LLVGTVELLSESHNFHVRAGVAVALGIACAGTG------DKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPN  659 (926)
T ss_pred             hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCc------cHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChh
Confidence            466678888778899999999999998887742      23456677788888888999999999988775443322222


Q ss_pred             HHhCchHHHHHhhCCC
Q 009568          283 IEAGVCPRLVELLGHP  298 (532)
Q Consensus       283 ~~~~~l~~L~~lL~~~  298 (532)
                      +. ++...+...+.+.
T Consensus       660 v~-~I~k~f~~vI~~K  674 (926)
T COG5116         660 VK-RIIKKFNRVIVDK  674 (926)
T ss_pred             HH-HHHHHHHHHHhhh
Confidence            21 4556666666543

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=95.42  E-value=0.45  Score=47.59  Aligned_cols=251  Identities=12%  Similarity=0.061  Sum_probs=131.0

Q ss_pred             HHHHHHHHhcCChhh-HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhh
Q 009568          138 AAWALTNIASGTSEN-TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAK  216 (532)
Q Consensus       138 a~~~L~~l~~~~~~~-~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~  216 (532)
                      +...|..+....+.. ....++...+..|+.++.++++.=|+....+|.++-+.....|..+.. .+...+.+.+.....
T Consensus       110 vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~~  188 (409)
T PF01603_consen  110 VYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETER  188 (409)
T ss_dssp             HHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS-
T ss_pred             HHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCccc
Confidence            444555554422211 223444566788999999999999999999999987655555555433 345556666644455


Q ss_pred             hHHHHHHHHHhhhccCCCCCCCcc-cccchHHHHHHhhcCCCHH-HHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHh
Q 009568          217 LSMLRNATWTLSNFCRGKPQPPFD-QVRPALPALAQLVHSNDEE-VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL  294 (532)
Q Consensus       217 ~~~~~~a~~~L~~L~~~~~~~~~~-~~~~~l~~L~~lL~~~d~~-v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l  294 (532)
                      ..-...++..++.+..+-..+-.. ...-....++++...+.-. .-.....++..+...++.....     ++..++..
T Consensus       189 ~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~-----~i~~llk~  263 (409)
T PF01603_consen  189 HNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEP-----VIKGLLKH  263 (409)
T ss_dssp             -STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHH-----HHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHH-----HHHHHHHh
Confidence            556667777788777765323222 2233334556666554322 2333344444444333333221     22223332


Q ss_pred             hCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHc---C
Q 009568          295 LGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDA---G  371 (532)
Q Consensus       295 L~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~---~  371 (532)
                      =-..+..-...-+.-+..+....+...-.-+...+...+...+.+. +..|-..|+..+.|=     . +-.++..   .
T Consensus       264 WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~n~-----~-~~~li~~~~~~  336 (409)
T PF01603_consen  264 WPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSP-HFQVAERALYFWNNE-----Y-FLSLISQNSRV  336 (409)
T ss_dssp             S-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGGSH-----H-HHHHHHCTHHH
T ss_pred             CCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHCCH-----H-HHHHHHhChHH
Confidence            2223333333445556666654432211222235667788888888 888888887664432     1 1122211   1


Q ss_pred             CHHHHHHHHhc----C-chhHHHHHHHHHHHhhcC
Q 009568          372 LVGPLVNLLQN----A-EFDIKKEAAWAISNATSG  401 (532)
Q Consensus       372 ~i~~L~~ll~~----~-~~~v~~~a~~aL~nl~~~  401 (532)
                      ++|.++..+..    . +..|+..|..++.-+..-
T Consensus       337 i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~  371 (409)
T PF01603_consen  337 ILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEM  371 (409)
T ss_dssp             HHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            45666665543    2 567888888777766553

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=95.42  E-value=2.9  Score=45.20  Aligned_cols=240  Identities=16%  Similarity=0.179  Sum_probs=145.4

Q ss_pred             cchHHHHHHhhcC-----CCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhC----CCC----ccchhhHHHH
Q 009568          243 RPALPALAQLVHS-----NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG----HPS----PSVLIPALRT  309 (532)
Q Consensus       243 ~~~l~~L~~lL~~-----~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~----~~~----~~v~~~al~~  309 (532)
                      .+++..++.++.+     .+.+....++..|.+++.- ..+.+.+++.+.++.|+..+.    .+.    ..+....+.+
T Consensus       116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I  194 (802)
T PF13764_consen  116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI  194 (802)
T ss_pred             CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence            3566777777653     2345666677777776655 445677888999999888773    333    5667777777


Q ss_pred             HHHhhcCCcchhHHH----h--------hcCchHHHHHHhcCCC---chhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHH
Q 009568          310 VGNIVTGDDFQTQCI----I--------TYGALPYLLGLLTHSH---KKSIKKEACWTISNITAGNRDQIQAVIDAGLVG  374 (532)
Q Consensus       310 L~nl~~~~~~~~~~~----~--------~~~~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~  374 (532)
                      +..+...........    .        +..-+..++..+.+..   ++.+....+.+|.+++.|+++..+.+++.  +.
T Consensus       195 iE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F~  272 (802)
T PF13764_consen  195 IESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--FK  272 (802)
T ss_pred             HHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--HH
Confidence            777664322110000    0        1122566666665442   57889999999999999999988888863  23


Q ss_pred             HHHHHHhcC---chhHHHHHHHHHHHhhcCC-----CHHHHHHHHHcCChHHHHhhcCCCC--------HH--------H
Q 009568          375 PLVNLLQNA---EFDIKKEAAWAISNATSGG-----THEQIKYLVREGCIKPLCDLFVCPD--------PR--------I  430 (532)
Q Consensus       375 ~L~~ll~~~---~~~v~~~a~~aL~nl~~~~-----~~~~~~~l~~~~~l~~L~~lL~~~d--------~~--------v  430 (532)
                      ..+++=.-+   ..+- ...+.+++.++.+-     .......+++.|++...+++|...-        ++        -
T Consensus       273 p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ps  351 (802)
T PF13764_consen  273 PYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPS  351 (802)
T ss_pred             HhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCc
Confidence            333322111   1111 22355555555432     2356677789999998888875321        22        2


Q ss_pred             HHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHh-cCCCHHHHHHHHHHHHHhCCCC
Q 009568          431 VTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQ-SHDNNEIYEKAVKILETYWLEE  500 (532)
Q Consensus       431 ~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~-~~~~~~v~~~a~~il~~~~~~~  500 (532)
                      ...+|..|.-+......              .+.+...+++..+-.|- -+....|-..|.++|+.+-+.+
T Consensus       352 Lp~iL~lL~GLa~gh~~--------------tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~  408 (802)
T PF13764_consen  352 LPYILRLLRGLARGHEP--------------TQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENE  408 (802)
T ss_pred             HHHHHHHHHHHHhcCHH--------------HHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcCh
Confidence            34566666666654332              22233456677777773 3446778888888888776543

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=95.17  E-value=0.95  Score=45.32  Aligned_cols=261  Identities=13%  Similarity=0.111  Sum_probs=144.8

Q ss_pred             HHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhC
Q 009568           91 QLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA  170 (532)
Q Consensus        91 ~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~  170 (532)
                      ....-..|..++......+.+..++...+..|+.++.++| +.-|.....+|.++-......+..+.. .+...+.+++.
T Consensus       107 L~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D-~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~  184 (409)
T PF01603_consen  107 LQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPD-PRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIY  184 (409)
T ss_dssp             HHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhc
Confidence            3345566666665432223555777789999999999999 898999888998887655555555543 34466666665


Q ss_pred             C-CCHHHHHHHHHHHHHhhCCCc-hhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHH
Q 009568          171 S-PSDDVREQAVWALGNVAGDSP-RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPA  248 (532)
Q Consensus       171 ~-~~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~  248 (532)
                      . ....-...++.+++.+..+-. ..+..-.. -....++.+.....-.........++..++..+|    .....++..
T Consensus       185 e~~~~~gI~elLeil~sii~gf~~plk~eh~~-fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp----~l~~~~i~~  259 (409)
T PF01603_consen  185 ETERHNGIAELLEILGSIINGFAVPLKEEHKQ-FLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDP----SLAEPVIKG  259 (409)
T ss_dssp             TTS--STHHHHHHHHHHHHTT--SS--HHHHH-HHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-G----GGHHHHHHH
T ss_pred             CcccccCHHHHHHHHHHHHhccCCCCcHHHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc----hhHHHHHHH
Confidence            4 334445667778888765421 12111100 0122333344222233344555555555554432    112233333


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhccCCh-hHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhc
Q 009568          249 LAQLVHSNDEEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITY  327 (532)
Q Consensus       249 L~~lL~~~d~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~  327 (532)
                      +++.=-..++.-....+.-+..+....+ ..... +...++..+...+.+++..|...|+..+.|     +... .++..
T Consensus       260 llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~-i~~~lf~~la~ci~S~h~qVAErAl~~w~n-----~~~~-~li~~  332 (409)
T PF01603_consen  260 LLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQK-IMVPLFKRLAKCISSPHFQVAERALYFWNN-----EYFL-SLISQ  332 (409)
T ss_dssp             HHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHH-HHHHHHHHHHHHHTSSSHHHHHHHHGGGGS-----HHHH-HHHHC
T ss_pred             HHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHCC-----HHHH-HHHHh
Confidence            4333334455544555555555554332 33222 233677888888899998898888876643     2122 22222


Q ss_pred             ---CchHHHHHHhcC-----CCchhHHHHHHHHHHHHhcCCHHHHHH
Q 009568          328 ---GALPYLLGLLTH-----SHKKSIKKEACWTISNITAGNRDQIQA  366 (532)
Q Consensus       328 ---~~l~~L~~lL~~-----~~~~~v~~~a~~~L~nl~~~~~~~~~~  366 (532)
                         .++|.+...|..     - +..|+..|..++.-+..-++.....
T Consensus       333 ~~~~i~p~i~~~L~~~~~~HW-n~~Vr~~a~~vl~~l~~~d~~lf~~  378 (409)
T PF01603_consen  333 NSRVILPIIFPALYRNSKNHW-NQTVRNLAQNVLKILMEMDPKLFDK  378 (409)
T ss_dssp             THHHHHHHHHHHHSSTTSS-S-STTHHHHHHHHHHHHHTTSHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhCHHHHHH
Confidence               356777776633     3 6789999999999998877765544

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=95.05  E-value=4  Score=48.28  Aligned_cols=264  Identities=14%  Similarity=0.098  Sum_probs=140.3

Q ss_pred             CCChHHHHHHHHHHHHHhcCC--CCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCCh
Q 009568           85 SDDSSLQLEATTQFRKLLSIE--RSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAV  162 (532)
Q Consensus        85 s~~~~~~~~a~~~l~~l~~~~--~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i  162 (532)
                      +.+..+...|+..|+.++..-  ..+....-.+..++.+|..++....+.+++...+.|+.++.....   ..+ .. +.
T Consensus      1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~---~nI-kS-GW 1222 (1780)
T PLN03076       1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV---NNV-KS-GW 1222 (1780)
T ss_pred             CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH---hhh-hc-Cc
Confidence            345678888888888876531  011111122345788888878766558999999999999876322   223 22 56


Q ss_pred             HHHHHhhC----CCCHHHHHHHHHHHHHhhCCCchh-----HHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhc---
Q 009568          163 PIFVKLLA----SPSDDVREQAVWALGNVAGDSPRC-----RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF---  230 (532)
Q Consensus       163 ~~L~~lL~----~~~~~v~~~a~~~L~nl~~~~~~~-----~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L---  230 (532)
                      ..+..++.    ..++.+.+.|..++..|+.+.-..     .+.+.  .++..+.....+..+..+--.++..|+++   
T Consensus      1223 ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~--DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~ 1300 (1780)
T PLN03076       1223 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFT--DCVNCLIAFTNSRFNKDISLNAIAFLRFCATK 1300 (1780)
T ss_pred             HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHH--HHHHHHHHHHhCcCcccccHHHHHHHHHHHHH
Confidence            66777665    357888899999888886442110     01111  12333333332222333333333333322   


Q ss_pred             -cCCC----------C-------------CC------CcccccchHH---HHHHhhcCCCHHHHHHHHHHHHHhccC---
Q 009568          231 -CRGK----------P-------------QP------PFDQVRPALP---ALAQLVHSNDEEVLTDACWALSYLSDG---  274 (532)
Q Consensus       231 -~~~~----------~-------------~~------~~~~~~~~l~---~L~~lL~~~d~~v~~~a~~~L~~l~~~---  274 (532)
                       +.+.          .             ..      .......-+|   .|..+....+.+|+..|+.+|..+...   
T Consensus      1301 La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~ 1380 (1780)
T PLN03076       1301 LAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGH 1380 (1780)
T ss_pred             HHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhc
Confidence             1110          0             00      0000122333   344445677899999999999877633   


Q ss_pred             --ChhHHHHHHHhCchHHHHHhhCCC----------------C---cc----chhh---HHHHHHHhhcCCcchhHHHhh
Q 009568          275 --TNDKIQAVIEAGVCPRLVELLGHP----------------S---PS----VLIP---ALRTVGNIVTGDDFQTQCIIT  326 (532)
Q Consensus       275 --~~~~~~~~~~~~~l~~L~~lL~~~----------------~---~~----v~~~---al~~L~nl~~~~~~~~~~~~~  326 (532)
                        +++....++. +++-+++..+++.                +   .+    +...   |++.+..+....-.....+++
T Consensus      1381 ~Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~ 1459 (1780)
T PLN03076       1381 LFSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLK 1459 (1780)
T ss_pred             cCCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              2334444444 4555555544311                0   00    1233   344444443322112222222


Q ss_pred             cCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 009568          327 YGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (532)
Q Consensus       327 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  358 (532)
                       +++..|..++..+ +..+-+-++.+|.++..
T Consensus      1460 -~~l~ll~~ci~q~-n~~la~ig~~~l~~li~ 1489 (1780)
T PLN03076       1460 -KVLMLLVSFIKRP-HQSLAGIGIAAFVRLMS 1489 (1780)
T ss_pred             -HHHHHHHHHHcCc-hHHHHHHHHHHHHHHHH
Confidence             5555556666666 77888888888888875

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=95.01  E-value=0.96  Score=44.46  Aligned_cols=241  Identities=17%  Similarity=0.188  Sum_probs=126.5

Q ss_pred             hHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhh-hccCCCCCCCc
Q 009568          162 VPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLS-NFCRGKPQPPF  239 (532)
Q Consensus       162 i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~-~L~~~~~~~~~  239 (532)
                      +..++.-|.+ ....+|..++--|+.-+.+ +.+|..+..+|....+++.+....+..+...++.++. -++++......
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l  101 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL  101 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence            4555655553 4567888888888888764 5689999999999999999954444435444444444 44444444444


Q ss_pred             ccccchHHHHHHhhcCC-CHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhC---------CCCccchhhHHHH
Q 009568          240 DQVRPALPALAQLVHSN-DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG---------HPSPSVLIPALRT  309 (532)
Q Consensus       240 ~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~---------~~~~~v~~~al~~  309 (532)
                      .........+..++... ...+.....      . ..........+ ..+..+...+.         +....-+..|+.+
T Consensus       102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~-~~~~~lsk~~~-~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~  173 (361)
T PF07814_consen  102 LLDRDSLRLLLKLLKVDKSLDVPSDSD------S-SRKKNLSKVQQ-KSRSLCKELLSSGSSWKSPKPPELSPQTLALLA  173 (361)
T ss_pred             hhchhHHHHHHHHhccccccccccchh------h-hhhhhhhHHHH-HHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence            34456666667777611 000000000      0 00000011111 12222222221         2234456677777


Q ss_pred             HHHhhcC--------------CcchhHHHhhcCchHHHHHHhcC----CC------c-----hhHHHHHHHHHHHHhcCC
Q 009568          310 VGNIVTG--------------DDFQTQCIITYGALPYLLGLLTH----SH------K-----KSIKKEACWTISNITAGN  360 (532)
Q Consensus       310 L~nl~~~--------------~~~~~~~~~~~~~l~~L~~lL~~----~~------~-----~~v~~~a~~~L~nl~~~~  360 (532)
                      +-.++..              .+...+.+...|++..++.++..    ..      .     ...-..+.++|-|.+..+
T Consensus       174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~  253 (361)
T PF07814_consen  174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS  253 (361)
T ss_pred             HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence            7777410              11223445566788888888752    10      1     112345667777777654


Q ss_pred             HHHHHHHHH--cCCHHHHHH----HHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 009568          361 RDQIQAVID--AGLVGPLVN----LLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVR  412 (532)
Q Consensus       361 ~~~~~~l~~--~~~i~~L~~----ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~  412 (532)
                      .+...+++.  .+.++.+..    ........+...++..+.|++.+. +..+..+..
T Consensus       254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n-~~~c~~~~s  310 (361)
T PF07814_consen  254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNN-PSACEEFAS  310 (361)
T ss_pred             ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCC-ccchHhhhh
Confidence            444444443  233333332    222233455678888999998764 344444333

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=95.00  E-value=2.9  Score=42.48  Aligned_cols=109  Identities=17%  Similarity=0.151  Sum_probs=79.5

Q ss_pred             cccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCc
Q 009568          239 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD  318 (532)
Q Consensus       239 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~  318 (532)
                      ...+.+.+..+++.+.++|..|+..+|..|+.+++.-.+. ...+-.+++..|...+-+.++.++..|+.+|+.+-....
T Consensus        86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eI-De~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~  164 (885)
T COG5218          86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREI-DEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL  164 (885)
T ss_pred             hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence            4556778888888888999999999999999988664432 444555888888888888899999999999998764332


Q ss_pred             chhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHH
Q 009568          319 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI  353 (532)
Q Consensus       319 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L  353 (532)
                      ..     +..+...+..+++...+.+||+.|..-+
T Consensus       165 ne-----en~~~n~l~~~vqnDPS~EVRr~allni  194 (885)
T COG5218         165 NE-----ENRIVNLLKDIVQNDPSDEVRRLALLNI  194 (885)
T ss_pred             Ch-----HHHHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence            11     1123446667776654778988775443

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.95  E-value=0.24  Score=45.86  Aligned_cols=147  Identities=18%  Similarity=0.178  Sum_probs=104.9

Q ss_pred             cchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhH
Q 009568          243 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQ  322 (532)
Q Consensus       243 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~  322 (532)
                      ...+...+..|.+.|++...+++..+..|+....+.....+. .++-.++.-+.+....+-..|+.+++.|.+.-.....
T Consensus        87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~  165 (334)
T KOG2933|consen   87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID  165 (334)
T ss_pred             HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556677788899999999999999999877766555554 5667777778888888999999999999876554443


Q ss_pred             HHhhcCchHHHHHHh-cCC--CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhh
Q 009568          323 CIITYGALPYLLGLL-THS--HKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNAT  399 (532)
Q Consensus       323 ~~~~~~~l~~L~~lL-~~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~  399 (532)
                      .     -+..++..| ...  .+.-|+..|-.+|..+..+-..+.       +++.|+..+.+..+.++..++.++.++.
T Consensus       166 ~-----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~-------~L~~L~~~~~~~n~r~r~~a~~~~~~~v  233 (334)
T KOG2933|consen  166 Q-----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK-------LLRKLIPILQHSNPRVRAKAALCFSRCV  233 (334)
T ss_pred             H-----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH-------HHHHHHHHHhhhchhhhhhhhccccccc
Confidence            3     233333333 221  134578888888888876422221       5677888888889999999988887776


Q ss_pred             cCC
Q 009568          400 SGG  402 (532)
Q Consensus       400 ~~~  402 (532)
                      ...
T Consensus       234 ~rl  236 (334)
T KOG2933|consen  234 IRL  236 (334)
T ss_pred             eec
Confidence            543

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.89  E-value=6.2  Score=41.72  Aligned_cols=318  Identities=13%  Similarity=0.114  Sum_probs=173.0

Q ss_pred             cHHHHHhhhcCC-ChHHHHHHHHHHHHHhcCCCCCchhHh--hhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009568           75 SLPAMVAGVWSD-DSSLQLEATTQFRKLLSIERSPPIEEV--IQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE  151 (532)
Q Consensus        75 ~l~~lv~~L~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~--i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~  151 (532)
                      ....+++.++.. |..++..+++.++-++..- +-.-+.+  .-..+...+.+++..-..-+.+...+..|+.+.....+
T Consensus       527 ~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~-nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e  605 (978)
T KOG1993|consen  527 LYCAFLNLLQDQNDLVVRLTTARTLKLVVDDW-NFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSE  605 (978)
T ss_pred             HHHHHHHhcCccccceeehHHHHHHHHhhhhc-cCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence            456777888866 7778889999998887643 1111111  12334445555665433245677777777777653333


Q ss_pred             hHHHHHhCCChHHHHHhh---CCCCHHHHHHHHHHHHHhhC----CCchhHHHHHhcCChHHHHHHhhhh---hhhHHHH
Q 009568          152 NTKVVIDHGAVPIFVKLL---ASPSDDVREQAVWALGNVAG----DSPRCRDLVLSQGALIPLLAQLNER---AKLSMLR  221 (532)
Q Consensus       152 ~~~~i~~~g~i~~L~~lL---~~~~~~v~~~a~~~L~nl~~----~~~~~~~~~~~~~~l~~L~~ll~~~---~~~~~~~  221 (532)
                      ......  +-+-.++..|   .++.+-++...+.+|.|+..    .++.+.      .++-+++.+-.+.   +..-+.+
T Consensus       606 ~I~P~~--~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~------~fL~pVIel~~D~~sP~hv~L~E  677 (978)
T KOG1993|consen  606 HIAPYA--STIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFY------PFLYPVIELSTDPSSPEHVYLLE  677 (978)
T ss_pred             hhhHHH--HHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccch------HHHHHHHHHhcCCCCCceeehhh
Confidence            332111  1111122222   12567788888888888862    112111      1233333333221   1223455


Q ss_pred             HHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHH-HhccCChhHHHHHHHhCchHHHHHhhCCCCc
Q 009568          222 NATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALS-YLSDGTNDKIQAVIEAGVCPRLVELLGHPSP  300 (532)
Q Consensus       222 ~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~-~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~  300 (532)
                      .+.........+.+ .-....-.++|.+...+....+.+. -++..+. |+.-.+... -.....|++..+..++.+-..
T Consensus       678 DgmeLW~~~L~n~~-~l~p~ll~L~p~l~~~iE~ste~L~-t~l~Ii~sYilLd~~~f-l~~y~~~i~k~~~~~l~dvr~  754 (978)
T KOG1993|consen  678 DGMELWLTTLMNSQ-KLTPELLLLFPHLLYIIEQSTENLP-TVLMIISSYILLDNTVF-LNDYAFGIFKKLNDLLDDVRN  754 (978)
T ss_pred             hHHHHHHHHHhccc-ccCHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHhhccHHH-HHHHHHHHHHHHHHHHHHhhH
Confidence            55544444444331 1122335677888888765544433 2333332 333223322 223344788888888887666


Q ss_pred             cchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhc-CCCchhHHHHHHHHHHHHhcCCHHHHHHHHH-cC-------
Q 009568          301 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLT-HSHKKSIKKEACWTISNITAGNRDQIQAVID-AG-------  371 (532)
Q Consensus       301 ~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~-------  371 (532)
                      +-....+.++..+...++ ........++++.+..-+- ....|.+-..-..+++.+.-.+++.+..+++ ..       
T Consensus       755 egl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msvlqt~~~~d~~~~  833 (978)
T KOG1993|consen  755 EGLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSVLQTKNTYDILIA  833 (978)
T ss_pred             HHHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHHHHhhhhHHHHHH
Confidence            667778888888887665 3334455678887765542 2226777778888888888777776665553 12       


Q ss_pred             -CHHHHHHHHhc-CchhHHHHHHHHHHHhhcCCCHH
Q 009568          372 -LVGPLVNLLQN-AEFDIKKEAAWAISNATSGGTHE  405 (532)
Q Consensus       372 -~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~~~~~~  405 (532)
                       ++...+.++.+ .+++-|+--+-|+..+...+.+.
T Consensus       834 ~li~~WI~~~~~I~~~k~rKl~~LalsSll~t~~~~  869 (978)
T KOG1993|consen  834 MLIGNWILLFDHINHPKDRKLNTLALSSLLRTNNPD  869 (978)
T ss_pred             HHHHHHHHHcccCCCHHHhhHHHHHHHHHhccCCcH
Confidence             12222222222 36666776677777776655443

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=94.88  E-value=0.72  Score=47.43  Aligned_cols=167  Identities=17%  Similarity=0.204  Sum_probs=114.4

Q ss_pred             CCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhC-CCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHH
Q 009568          256 NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG-HPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLL  334 (532)
Q Consensus       256 ~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~  334 (532)
                      +|++++..|..+|..+..-+.+...     .-+|.++..+. +++|.+|..|+-.+|.++-......+     ..-..|.
T Consensus       908 sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~d-----e~t~yLy  977 (1128)
T COG5098         908 SDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTAD-----EHTHYLY  977 (1128)
T ss_pred             CCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehhhhhH-----HHHHHHH
Confidence            6888988888888776544333322     56788888886 79999999999999988765443333     2234677


Q ss_pred             HHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcC
Q 009568          335 GLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREG  414 (532)
Q Consensus       335 ~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~  414 (532)
                      .-|.+. +..||+.+..++.++.-.+.     +--.|-++.+..+|.+++.++...|-..+..++...+.      +-.|
T Consensus       978 rrL~De-~~~V~rtclmti~fLilagq-----~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdNt------~yn~ 1045 (1128)
T COG5098         978 RRLGDE-DADVRRTCLMTIHFLILAGQ-----LKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDNT------MYNG 1045 (1128)
T ss_pred             HHhcch-hhHHHHHHHHHHHHHHHccc-----eeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcccc------hhhh
Confidence            888887 89999999999999875322     11256788999999999999999999999999876442      1234


Q ss_pred             ChHHHHhhcCC---CCHHHHHHHHHHHHHHHHhh
Q 009568          415 CIKPLCDLFVC---PDPRIVTVCLEGLENILKVG  445 (532)
Q Consensus       415 ~l~~L~~lL~~---~d~~v~~~al~~L~~l~~~~  445 (532)
                      .++.+-.+-++   .+.. -..++..|..++...
T Consensus      1046 fidifs~ls~~ae~g~e~-fk~II~FLt~fI~ke 1078 (1128)
T COG5098        1046 FIDIFSTLSSDAENGQEP-FKLIIGFLTDFISKE 1078 (1128)
T ss_pred             hHHHHHHcCchhhcCCCc-HHHHHHHHHHHHHHH
Confidence            44444333321   2222 334555566565543

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=94.87  E-value=0.14  Score=36.80  Aligned_cols=65  Identities=18%  Similarity=0.308  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhc
Q 009568          135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQ  201 (532)
Q Consensus       135 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~  201 (532)
                      ...|+|+++++++ ++.....+.+.++++.++++..+ +...+|-.|+++|+-++.... -.+.+.+.
T Consensus         4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~-G~~~L~~~   69 (73)
T PF14668_consen    4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEE-GAEILDEL   69 (73)
T ss_pred             HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHH-HHHHHHHc
Confidence            4678999999998 66666666678999999998875 778999999999999976543 34444443

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=94.76  E-value=0.23  Score=42.32  Aligned_cols=146  Identities=10%  Similarity=0.054  Sum_probs=85.7

Q ss_pred             cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q 009568          118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL  197 (532)
Q Consensus       118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~  197 (532)
                      +++.|.++|+.+.+..+|.+++++|+.|..-+|-..+.+...  .+.-.  -...+.......... .+.....+    .
T Consensus        11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~~~~--~~~~~~~~~~~~l~~-~~~~~~~e----e   81 (160)
T PF11865_consen   11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LDSKS--SENSNDESTDISLPM-MGISPSSE----E   81 (160)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CCccc--cccccccchhhHHhh-ccCCCchH----H
Confidence            678889999987668999999999999988666544422211  11000  011112222222211 11111111    2


Q ss_pred             HHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 009568          198 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS  272 (532)
Q Consensus       198 ~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~  272 (532)
                      ..-..++..|++.|.+..-..-...++.++.++..............++|.++..+++.++..++..++-|+.+.
T Consensus        82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV  156 (160)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            222335778888885444344444566666666644433446667889999999999777788887777776654

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=94.71  E-value=1.3  Score=43.52  Aligned_cols=264  Identities=19%  Similarity=0.155  Sum_probs=136.7

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHH-HHhhCCCchhHH
Q 009568          119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWAL-GNVAGDSPRCRD  196 (532)
Q Consensus       119 i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L-~nl~~~~~~~~~  196 (532)
                      +..+++-|.+.....+|..++--|+.-+. +++.+..+..+|.+..+++.+.. ++..+...++.++ .-++.+.. .-.
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~-~~~  100 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL-NMH  100 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc-chh
Confidence            45566666644446889998888888888 89999999999999999999855 4442444444444 44444443 333


Q ss_pred             HHHhcCChHHHHHHhh--hh----hhh-----HHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhc---------CC
Q 009568          197 LVLSQGALIPLLAQLN--ER----AKL-----SMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH---------SN  256 (532)
Q Consensus       197 ~~~~~~~l~~L~~ll~--~~----~~~-----~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~---------~~  256 (532)
                      .+...+....++.++.  ..    .+.     .......                  ...+..+.+.+.         ..
T Consensus       101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~------------------~~~~~~~~~~~~~~~~~~~~~~~  162 (361)
T PF07814_consen  101 LLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQ------------------QKSRSLCKELLSSGSSWKSPKPP  162 (361)
T ss_pred             hhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHH------------------HHHHHHHHHHHhccccccccCCc
Confidence            4444555555566663  00    000     0000000                  011111111110         01


Q ss_pred             CHHHHHHHHHHHHHhc--------------cCChhHHHHHHHhCchHHHHHhhC----CC-------C-----ccchhhH
Q 009568          257 DEEVLTDACWALSYLS--------------DGTNDKIQAVIEAGVCPRLVELLG----HP-------S-----PSVLIPA  306 (532)
Q Consensus       257 d~~v~~~a~~~L~~l~--------------~~~~~~~~~~~~~~~l~~L~~lL~----~~-------~-----~~v~~~a  306 (532)
                      ...-+..++.++-.++              ...+.....+...|++..++..+.    ..       .     ......+
T Consensus       163 ~lsp~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~c  242 (361)
T PF07814_consen  163 ELSPQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERC  242 (361)
T ss_pred             ccccccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHH
Confidence            1112222222222221              111122234555677888887764    11       1     1234568


Q ss_pred             HHHHHHhhcCCcchhHHHhhc--CchHHHHHH-hcCC--CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH-
Q 009568          307 LRTVGNIVTGDDFQTQCIITY--GALPYLLGL-LTHS--HKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLL-  380 (532)
Q Consensus       307 l~~L~nl~~~~~~~~~~~~~~--~~l~~L~~l-L~~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll-  380 (532)
                      +++|-+.+..+.....+++..  +.++.+... +...  ..+.+...++..+.|++..++.....+...++...+..+. 
T Consensus       243 l~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~  322 (361)
T PF07814_consen  243 LSILESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVT  322 (361)
T ss_pred             HHHHHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHH
Confidence            888888887766555455443  333333322 2222  0234456788999999988876666555443322211111 


Q ss_pred             ------h-------cCchhHHHHHHHHHHHhhcCC
Q 009568          381 ------Q-------NAEFDIKKEAAWAISNATSGG  402 (532)
Q Consensus       381 ------~-------~~~~~v~~~a~~aL~nl~~~~  402 (532)
                            .       ....+...-++.++.|++...
T Consensus       323 ~~~~~~~~~~~~~~~~~~D~~IL~Lg~LINL~E~s  357 (361)
T PF07814_consen  323 SFFCVLSLPNYVPEESSFDILILALGLLINLVEHS  357 (361)
T ss_pred             hhcccccccccccccccchHHHHHHHhHHHheeeC
Confidence                  1       113456667777777777653

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=94.71  E-value=0.48  Score=40.32  Aligned_cols=136  Identities=22%  Similarity=0.206  Sum_probs=93.2

Q ss_pred             CCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHH-hhcCchHHH
Q 009568          255 SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCI-ITYGALPYL  333 (532)
Q Consensus       255 ~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~-~~~~~l~~L  333 (532)
                      ...++++..+.-++..+.+    ....-....+-..+..++...+.+-...++.++..+..+.++....+ ...|+++.+
T Consensus        16 ~~~~~~r~~a~v~l~k~l~----~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l   91 (157)
T PF11701_consen   16 RQPEEVRSHALVILSKLLD----AAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESL   91 (157)
T ss_dssp             TTSCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHH
T ss_pred             CCCHhHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHH
Confidence            3567788888888887742    22222333344556666666666678888999999988887655444 467999999


Q ss_pred             HHHhc--CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc-Cchh-HHHHHHHHHHH
Q 009568          334 LGLLT--HSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN-AEFD-IKKEAAWAISN  397 (532)
Q Consensus       334 ~~lL~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~-v~~~a~~aL~n  397 (532)
                      ..++.  .. +..++..++.+|+.-|.. .... ..+....++.|-..+.. ++.. +|..|+-+|+.
T Consensus        92 ~~~~~~~~~-~~~~~~~~lell~aAc~d-~~~r-~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   92 LPLASRKSK-DRKVQKAALELLSAACID-KSCR-TFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HHHHH-CTS--HHHHHHHHHHHHHHTTS-HHHH-HCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHHHhcccC-CHHHHHHHHHHHHHHHcc-HHHH-HHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            99998  55 778888888888776643 4444 44444578999999854 4555 88888887764

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=94.61  E-value=0.82  Score=51.53  Aligned_cols=148  Identities=16%  Similarity=0.150  Sum_probs=95.6

Q ss_pred             CchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHH
Q 009568          286 GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQ  365 (532)
Q Consensus       286 ~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~  365 (532)
                      +++|.|..-|.+.+..+|..|+..+|.+......+.. =-...+....+.-+.+. +..||.++.....++...++....
T Consensus       259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~-~~~vR~~~v~~~~~~l~~~~~~~~  336 (1266)
T KOG1525|consen  259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDI-SVEVRMECVESIKQCLLNNPSIAK  336 (1266)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccC-ChhhhhhHHHHhHHHHhcCchhhh
Confidence            7889999999999999999999999999976553321 00124455666667777 889999999999998877666443


Q ss_pred             HHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 009568          366 AVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV  444 (532)
Q Consensus       366 ~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~  444 (532)
                      ...   +...+-  ..+.|+++|.....++..+..  . ...-.+... ++..+-+.+.+....|+..|+..|..+.+.
T Consensus       337 ~~~---~~~~l~--~~~~D~~~rir~~v~i~~~~v--~-~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~  406 (1266)
T KOG1525|consen  337 AST---ILLALR--ERDLDEDVRVRTQVVIVACDV--M-KFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN  406 (1266)
T ss_pred             HHH---HHHHHH--hhcCChhhhheeeEEEEEeeh--h-HhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            322   112222  122344544333322222211  1 111112222 667777778889999999999999999874

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=94.56  E-value=3.5  Score=40.74  Aligned_cols=143  Identities=12%  Similarity=0.185  Sum_probs=102.8

Q ss_pred             hhHHHHHHHhhc---CCcchhHHHhh-cCchHHHHHHhcCCC--chhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHH
Q 009568          304 IPALRTVGNIVT---GDDFQTQCIIT-YGALPYLLGLLTHSH--KKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLV  377 (532)
Q Consensus       304 ~~al~~L~nl~~---~~~~~~~~~~~-~~~l~~L~~lL~~~~--~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~  377 (532)
                      +..++++..+..   +......-+++ ..++..|..++.+..  -+.+-..|+.+++.+....|.....+.+.|+++.++
T Consensus        78 K~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L  157 (379)
T PF06025_consen   78 KSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFL  157 (379)
T ss_pred             HHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHH
Confidence            445566666666   22334445667 566777888887652  367888999999999998898888888999999999


Q ss_pred             HHHh-cC---chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCH-------HHHHHHHHHHHHHHHhhh
Q 009568          378 NLLQ-NA---EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDP-------RIVTVCLEGLENILKVGE  446 (532)
Q Consensus       378 ~ll~-~~---~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~-------~v~~~al~~L~~l~~~~~  446 (532)
                      +.+. .+   +.++-...-.+|+.+|.  +....+.+.+.+.++.+++++.+++.       ++....=.++..|++..+
T Consensus       158 ~~i~~~~i~~s~e~l~~lP~~l~AicL--N~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p  235 (379)
T PF06025_consen  158 DAITAKGILPSSEVLTSLPNVLSAICL--NNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHP  235 (379)
T ss_pred             HHHhccCCCCcHHHHHHHHHHHhHHhc--CHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCH
Confidence            9998 43   45666667777888887  56888888899999999999876542       233333345556666555


Q ss_pred             hh
Q 009568          447 AE  448 (532)
Q Consensus       447 ~~  448 (532)
                      ..
T Consensus       236 ~L  237 (379)
T PF06025_consen  236 SL  237 (379)
T ss_pred             HH
Confidence            44

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.33  E-value=0.2  Score=46.28  Aligned_cols=142  Identities=13%  Similarity=0.190  Sum_probs=97.7

Q ss_pred             hHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 009568          288 CPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAV  367 (532)
Q Consensus       288 l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l  367 (532)
                      +...+..|.+.+|.....++..|..++...++.....+. .++-.+++-+++. ...|-+.||.+++.++..-...+...
T Consensus        90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNl-RS~VsraA~~t~~difs~ln~~i~~~  167 (334)
T KOG2933|consen   90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNL-RSAVSRAACMTLADIFSSLNNSIDQE  167 (334)
T ss_pred             HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455667788889999999999999998876644333333 3455566666777 77899999999999987444444443


Q ss_pred             HHcCCHHHHHHHHhcC---chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 009568          368 IDAGLVGPLVNLLQNA---EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILK  443 (532)
Q Consensus       368 ~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~  443 (532)
                      ++    ..+..++...   +.-++..|-.+|..++.+.++..        +++.|...+...++.++..+.-++.+...
T Consensus       168 ld----~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~--------~L~~L~~~~~~~n~r~r~~a~~~~~~~v~  234 (334)
T KOG2933|consen  168 LD----DLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK--------LLRKLIPILQHSNPRVRAKAALCFSRCVI  234 (334)
T ss_pred             HH----HHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH--------HHHHHHHHHhhhchhhhhhhhccccccce
Confidence            22    2333344433   34588999999999988766543        56677777888888888777666555543

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.32  E-value=3.2  Score=43.04  Aligned_cols=184  Identities=15%  Similarity=0.108  Sum_probs=113.6

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHhcC-Ch----hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh
Q 009568          120 PRFVEFLMREDYPQLQFEAAWALTNIASG-TS----ENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC  194 (532)
Q Consensus       120 ~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~-~~----~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~  194 (532)
                      |.|..-|+-.+ ..+|..|+..+.++--- ++    +..+.+++.. ...|..+|.++.+.+|..|+..++.+.+.   +
T Consensus       177 p~l~R~L~a~N-s~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQ-f~~l~~LL~d~~p~VRS~a~~gv~k~~s~---f  251 (1005)
T KOG1949|consen  177 PILWRGLKARN-SEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQ-FEELYSLLEDPYPMVRSTAILGVCKITSK---F  251 (1005)
T ss_pred             HHHHHhhccCc-hhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHH-HHHHHHHhcCCCchHHHHHHHHHHHHHHH---H
Confidence            34455566677 89999999999997541 22    3445555533 57788899999999999999888887542   2


Q ss_pred             HHHHHhcCCh----HHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHH
Q 009568          195 RDLVLSQGAL----IPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSY  270 (532)
Q Consensus       195 ~~~~~~~~~l----~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~  270 (532)
                      -.. +-..++    ..+..-+..++..+++......|..+..++  ........++|.+-..+.++.+.|+..+...|..
T Consensus       252 We~-iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np--~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~  328 (1005)
T KOG1949|consen  252 WEM-IPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP--LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLK  328 (1005)
T ss_pred             HHH-cCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc--cchhHHHHHHHhcchhhhccchhHHHHHHHHHHH
Confidence            111 112222    333333334455678888888888887763  2233445677777788888889999888888776


Q ss_pred             hccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhh
Q 009568          271 LSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV  314 (532)
Q Consensus       271 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~  314 (532)
                      +-....   ..+.+-=-...++..|..++..+....+..|-+.+
T Consensus       329 ik~vra---~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~  369 (1005)
T KOG1949|consen  329 IKAVRA---AKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSF  369 (1005)
T ss_pred             HHhhhh---hhhhccccHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence            643211   11222122344555566665555555555555544

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.25  E-value=6.7  Score=41.46  Aligned_cols=218  Identities=12%  Similarity=0.113  Sum_probs=109.8

Q ss_pred             hHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHH---HHHHHHH----HHHHhccCChhHHHHHHHhCchH
Q 009568          217 LSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEE---VLTDACW----ALSYLSDGTNDKIQAVIEAGVCP  289 (532)
Q Consensus       217 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~---v~~~a~~----~L~~l~~~~~~~~~~~~~~~~l~  289 (532)
                      +-++...+.+|.++...-.........-++|.+-.....+.|+   ..+++..    +|.|...-.++    ++  +++|
T Consensus       629 ~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~----ll--~L~p  702 (978)
T KOG1993|consen  629 PLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPE----LL--LLFP  702 (978)
T ss_pred             cHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHH----HH--HHHH
Confidence            3455556778888877654444433333444443333222222   2333322    23333222222    22  5677


Q ss_pred             HHHHhhCCCCccchhhHHHHHHHhhc-CCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 009568          290 RLVELLGHPSPSVLIPALRTVGNIVT-GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVI  368 (532)
Q Consensus       290 ~L~~lL~~~~~~v~~~al~~L~nl~~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~  368 (532)
                      .+..++....... ..++.++..-.- .+.... .-...|+...+..++.+- ..+-....+.++..+...++ ......
T Consensus       703 ~l~~~iE~ste~L-~t~l~Ii~sYilLd~~~fl-~~y~~~i~k~~~~~l~dv-r~egl~avLkiveili~t~~-il~~~~  778 (978)
T KOG1993|consen  703 HLLYIIEQSTENL-PTVLMIISSYILLDNTVFL-NDYAFGIFKKLNDLLDDV-RNEGLQAVLKIVEILIKTNP-ILGSLL  778 (978)
T ss_pred             HHHHHHHhhhhhH-HHHHHHHHHHHhhccHHHH-HHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHhhhH-HHHhhh
Confidence            7777776544333 233444433221 111111 111236677777777654 44444556666666665544 455566


Q ss_pred             HcCCHHHHHHHHhc--CchhHHHHHHHHHHHhhcCCCHHHHHHHHH-cCChHHHH--------hhcC-CCCHHHHHHHHH
Q 009568          369 DAGLVGPLVNLLQN--AEFDIKKEAAWAISNATSGGTHEQIKYLVR-EGCIKPLC--------DLFV-CPDPRIVTVCLE  436 (532)
Q Consensus       369 ~~~~i~~L~~ll~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~-~~~l~~L~--------~lL~-~~d~~v~~~al~  436 (532)
                      ..+++|.++.-+-.  +.|.+...-+..++.+.... ++..-.+++ ..-.+.++        .+.+ -.+++-++.-.-
T Consensus       779 ~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n-~~~~msvlqt~~~~d~~~~~li~~WI~~~~~I~~~k~rKl~~L  857 (978)
T KOG1993|consen  779 FSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRN-PSLFMSVLQTKNTYDILIAMLIGNWILLFDHINHPKDRKLNTL  857 (978)
T ss_pred             cchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcC-hHHHHHHHHhhhhHHHHHHHHHHHHHHHcccCCCHHHhhHHHH
Confidence            67788877776533  35677777788888877663 333333332 22222222        2233 245666666666


Q ss_pred             HHHHHHHhh
Q 009568          437 GLENILKVG  445 (532)
Q Consensus       437 ~L~~l~~~~  445 (532)
                      ++..++..+
T Consensus       858 alsSll~t~  866 (978)
T KOG1993|consen  858 ALSSLLRTN  866 (978)
T ss_pred             HHHHHhccC
Confidence            677776653

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=94.23  E-value=1.4  Score=45.91  Aligned_cols=205  Identities=15%  Similarity=0.135  Sum_probs=120.2

Q ss_pred             HHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCC-CC
Q 009568          221 RNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PS  299 (532)
Q Consensus       221 ~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~  299 (532)
                      ......|..+...  .+.......++|.|+..+..  ....-..+-.+..++...+   +......+++.|...++. ..
T Consensus       291 s~Flk~Ls~~ip~--fp~rv~~~kiLP~L~~el~n--~~~vp~~LP~v~~i~~~~s---~~~~~~~~~p~l~pi~~~~~~  363 (700)
T KOG2137|consen  291 SSFLKGLSKLIPT--FPARVLFQKILPTLVAELVN--TKMVPIVLPLVLLIAEGLS---QNEFGPKMLPALKPIYSASDP  363 (700)
T ss_pred             HHHHHHHHHhhcc--CCHHHHHHhhhhHHHHHhcc--ccccccccchhhhhhhccc---hhhhhhhhhHHHHHHhccCCc
Confidence            3334445444433  23334446777777777633  2233333333444443333   223344678888888874 23


Q ss_pred             ccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHH
Q 009568          300 PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNL  379 (532)
Q Consensus       300 ~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~l  379 (532)
                      ..+..-.+.-+--|....+   ..-+...++|.|...+++. +..++..++..+..++..-+   -..+..-++|.+..+
T Consensus       364 ~~~~l~i~e~mdlL~~Kt~---~e~~~~~IlplL~~S~~~~-~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l  436 (700)
T KOG2137|consen  364 KQALLFILENMDLLKEKTP---PEEVKEKILPLLYRSLEDS-DVQIQELALQILPTVAESID---VPFVKQAILPRLKNL  436 (700)
T ss_pred             ccchhhHHhhHHHHHhhCC---hHHHHHHHHHHHHHHhcCc-chhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcc
Confidence            3333222222222332222   2234457899999999988 99999999999999876322   123445578888776


Q ss_pred             H-hcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 009568          380 L-QNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV  444 (532)
Q Consensus       380 l-~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~  444 (532)
                      . ...+..++.+++.|+..++...+..     .--..+.++....+..|+.++...+.+..++.-.
T Consensus       437 ~~~tt~~~vkvn~L~c~~~l~q~lD~~-----~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~  497 (700)
T KOG2137|consen  437 AFKTTNLYVKVNVLPCLAGLIQRLDKA-----AVLDELLPILKCIKTRDPAIVMGFLRIYEALALI  497 (700)
T ss_pred             hhcccchHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhh
Confidence            4 3457899999999999887322111     1112355666677788999888888877776543

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=94.21  E-value=4.4  Score=37.73  Aligned_cols=218  Identities=15%  Similarity=0.158  Sum_probs=120.6

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHH
Q 009568          122 FVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDSPRCRDLVL  199 (532)
Q Consensus       122 Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~  199 (532)
                      |=..|.+++ +.+|..|+.+|..+...-+..   .+...-+..|+.++.+  .+......++.++..+.....-....  
T Consensus         4 Lg~~Ltsed-~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~--   77 (262)
T PF14500_consen    4 LGEYLTSED-PIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES--   77 (262)
T ss_pred             hhhhhCCCC-HHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh--
Confidence            445677877 899999999999987644422   1222334556655443  45555555566666665322211111  


Q ss_pred             hcCChHHHHHHhh-hhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcC-CCHHHHHHHHHHHHHhccCChh
Q 009568          200 SQGALIPLLAQLN-ERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHS-NDEEVLTDACWALSYLSDGTND  277 (532)
Q Consensus       200 ~~~~l~~L~~ll~-~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~-~d~~v~~~a~~~L~~l~~~~~~  277 (532)
                      ...++..+.+... +......+..+...+..+.......-.......+..+++.+.. .||.-...+...+..+...-+-
T Consensus        78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~  157 (262)
T PF14500_consen   78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI  157 (262)
T ss_pred             HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence            1112223332221 1223455666777777776653211122234566667777764 4888777777777666543321


Q ss_pred             HHHHHHHhCchHHHHHhhC--------C-C-Cc-c-chhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhH
Q 009568          278 KIQAVIEAGVCPRLVELLG--------H-P-SP-S-VLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSI  345 (532)
Q Consensus       278 ~~~~~~~~~~l~~L~~lL~--------~-~-~~-~-v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v  345 (532)
                             ....+.+...+.        . + ++ . .+..--..|.+....++..     ..-++|.|+.-|.++ .+.+
T Consensus       158 -------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~-~~~~  224 (262)
T PF14500_consen  158 -------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDST-SPSV  224 (262)
T ss_pred             -------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCC-CcHH
Confidence                   123333333321        1 1 21 1 2333334454444444422     235789999999998 8899


Q ss_pred             HHHHHHHHHHHhc
Q 009568          346 KKEACWTISNITA  358 (532)
Q Consensus       346 ~~~a~~~L~nl~~  358 (532)
                      +..++.+|..++.
T Consensus       225 K~D~L~tL~~c~~  237 (262)
T PF14500_consen  225 KLDSLQTLKACIE  237 (262)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998876

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=94.16  E-value=4.9  Score=37.44  Aligned_cols=224  Identities=14%  Similarity=0.096  Sum_probs=133.8

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhh-hhhhHHHHHHHHHhhhccCCCCCCCccc
Q 009568          163 PIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE-RAKLSMLRNATWTLSNFCRGKPQPPFDQ  241 (532)
Q Consensus       163 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~  241 (532)
                      ..|-..|.++++.+|..|+.+|+.+...-+..   .+...-+..|+..+.. -.|......++.++..|.+... .....
T Consensus         2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~-~~~~~   77 (262)
T PF14500_consen    2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKN-FSPES   77 (262)
T ss_pred             cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcC-CChhh
Confidence            34556788899999999999999987655431   1222235555555432 1345555555666666664432 11122


Q ss_pred             ccchHHHHHHhhc--CCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCC-CCccchhhHHHHHHHhhcCCc
Q 009568          242 VRPALPALAQLVH--SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLIPALRTVGNIVTGDD  318 (532)
Q Consensus       242 ~~~~l~~L~~lL~--~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~  318 (532)
                      ...++..+.+-..  +-....|..+...+..+.......... ...+++..+++.+.. .||.....+...+..+....+
T Consensus        78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~-~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~  156 (262)
T PF14500_consen   78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQS-MGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD  156 (262)
T ss_pred             HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHh-chhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence            2333333333222  223557888888888887665433322 233677778887755 578888888888887776554


Q ss_pred             chhHHHhhcCchHHHHHHhc--------CCC-ch--hHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhH
Q 009568          319 FQTQCIITYGALPYLLGLLT--------HSH-KK--SIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDI  387 (532)
Q Consensus       319 ~~~~~~~~~~~l~~L~~lL~--------~~~-~~--~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v  387 (532)
                      .       ....+-+...+.        .+. ++  -.+..-...|.++...++...     .-.+|.|++-|.++.+.+
T Consensus       157 ~-------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~~~~~  224 (262)
T PF14500_consen  157 I-------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDSTSPSV  224 (262)
T ss_pred             c-------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCCCcHH
Confidence            1       223333443332        111 22  234555566666665555432     226899999999999999


Q ss_pred             HHHHHHHHHHhhcCCC
Q 009568          388 KKEAAWAISNATSGGT  403 (532)
Q Consensus       388 ~~~a~~aL~nl~~~~~  403 (532)
                      +..++.+|..++..-.
T Consensus       225 K~D~L~tL~~c~~~y~  240 (262)
T PF14500_consen  225 KLDSLQTLKACIENYG  240 (262)
T ss_pred             HHHHHHHHHHHHHHCC
Confidence            9999999998876433

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=93.96  E-value=2.3  Score=42.88  Aligned_cols=266  Identities=11%  Similarity=0.079  Sum_probs=128.9

Q ss_pred             CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC----CCCCcccccchHH
Q 009568          172 PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK----PQPPFDQVRPALP  247 (532)
Q Consensus       172 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~----~~~~~~~~~~~l~  247 (532)
                      +|+-+....++++..+-.+.......++.. ....+.....+..++..-.....+++.+.+..    +.........++|
T Consensus        42 ENeylMk~iMRvl~~~~e~~~p~~~~il~~-L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P  120 (435)
T PF03378_consen   42 ENEYLMKCIMRVLSVLQEDILPIAVEILQH-LTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFP  120 (435)
T ss_dssp             C-HHHHHHHHHHHHHSTTTTGGGHHHHHHH-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHH
T ss_pred             cchHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHH
Confidence            567777777777776654444443343332 22333333334456766666666666655442    2222345577889


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhccCCh-hHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhh
Q 009568          248 ALAQLVHSNDEEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIIT  326 (532)
Q Consensus       248 ~L~~lL~~~d~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~  326 (532)
                      .+..+|+.+=.+..-++...++.+.+..+ ....... ..+++.|+.-.-.....-.-+..+.|..+....+..   +..
T Consensus       121 ~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y-~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~---i~~  196 (435)
T PF03378_consen  121 PFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAY-KQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSF---IVA  196 (435)
T ss_dssp             HHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTT-GGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHH-HHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchh---hcc
Confidence            99999988878888888888888875544 1111000 022222222111112222334455666665543322   222


Q ss_pred             cC----chHHHHHHhcCCCchhHHHHHHHHHHHHhcCC-HHHHHHHHHcCCHHHHHHHHhcC-chhHHHHHHHHHHHhhc
Q 009568          327 YG----ALPYLLGLLTHSHKKSIKKEACWTISNITAGN-RDQIQAVIDAGLVGPLVNLLQNA-EFDIKKEAAWAISNATS  400 (532)
Q Consensus       327 ~~----~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~  400 (532)
                      .+    ++..+-+++.+. .  --.++...|..+...- .+..+..+.. ++..++.-|++. ..+..+..+..++.++.
T Consensus       197 ~~~l~~iLgvFQkLi~sk-~--~D~~gF~LL~~iv~~~p~~~l~~yl~~-I~~lll~RLq~skT~kf~~~fv~F~~~~~~  272 (435)
T PF03378_consen  197 NNQLEPILGVFQKLIASK-A--NDHYGFDLLESIVENLPPEALEPYLKQ-IFTLLLTRLQSSKTEKFVKRFVVFLSLFAI  272 (435)
T ss_dssp             -S-CHHHHHHHHHHHT-T-T--CHHHHHHHHHHHHHHS-HHHHGGGHHH-HHHHHHHHHHHC--HHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHCCC-C--cchHHHHHHHHHHHHCCHHHHHHHHHH-HHHHHHHHHhhCCcHHHHHHHHHHHHHHHH
Confidence            23    334444566554 2  2245667777776533 3334444432 555666666643 56666666666666655


Q ss_pred             CCCHHHHHHHHH---cCChHHHHhh-----cC-CCCHHHHHHHHHHHHHHHHhhh
Q 009568          401 GGTHEQIKYLVR---EGCIKPLCDL-----FV-CPDPRIVTVCLEGLENILKVGE  446 (532)
Q Consensus       401 ~~~~~~~~~l~~---~~~l~~L~~l-----L~-~~d~~v~~~al~~L~~l~~~~~  446 (532)
                      ..+++.....++   .|+...+..-     ++ -..+.=++.+.-++.+++...+
T Consensus       273 ~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es~  327 (435)
T PF03378_consen  273 KYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCESP  327 (435)
T ss_dssp             HH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSST
T ss_pred             HcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhccH
Confidence            434444444443   2333333321     11 1233345666667777775443

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=93.91  E-value=6.6  Score=38.10  Aligned_cols=166  Identities=18%  Similarity=0.192  Sum_probs=119.2

Q ss_pred             HHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHc-CC-HHHHHHHHhcC-----c--------hh
Q 009568          323 CIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQAVIDA-GL-VGPLVNLLQNA-----E--------FD  386 (532)
Q Consensus       323 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~-~~-i~~L~~ll~~~-----~--------~~  386 (532)
                      .+++.. +..+.+.|.+. .+.+...+...|..++. ........++.. ++ .+.+..++...     .        +.
T Consensus        52 ~iL~~~-~k~lyr~L~~~-~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~s  129 (330)
T PF11707_consen   52 SILQNH-LKLLYRSLSSS-KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPS  129 (330)
T ss_pred             HHHHHH-HHHHHHHhCcC-cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcC
Confidence            344433 78899999988 78888899999999998 666666666642 33 44555555321     1        28


Q ss_pred             HHHHHHHHHHHhhcCCCHHHHHHHHH-cCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHH
Q 009568          387 IKKEAAWAISNATSGGTHEQIKYLVR-EGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLV  465 (532)
Q Consensus       387 v~~~a~~aL~nl~~~~~~~~~~~l~~-~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~  465 (532)
                      +|...+..+..+...+++.....+++ .+.+..+..-+..++++++..++++|..-+-..+.....        .-+..|
T Consensus       130 iR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~--------~K~~~f  201 (330)
T PF11707_consen  130 IRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRS--------TKCKLF  201 (330)
T ss_pred             HHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChh--------hhhhhc
Confidence            99999998888888888887777764 577889999999988899999999998644333332211        112333


Q ss_pred             HHhccHHHHHHHhcCCCH----HHHHHHHHHHHHhCCC
Q 009568          466 EEAEGLEKIENLQSHDNN----EIYEKAVKILETYWLE  499 (532)
Q Consensus       466 ~~~g~~~~l~~L~~~~~~----~v~~~a~~il~~~~~~  499 (532)
                      . ...+.+|-.|-...++    .+.+.+.+.+..+...
T Consensus       202 n-~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~  238 (330)
T PF11707_consen  202 N-EWTLSQLASLYSRDGEDEKSSVADLVHEFLLALCTD  238 (330)
T ss_pred             C-HHHHHHHHHHhcccCCcccchHHHHHHHHHHHHhcC
Confidence            3 4467888888888777    8999999999988753

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=93.86  E-value=5.1  Score=47.46  Aligned_cols=268  Identities=9%  Similarity=0.068  Sum_probs=143.6

Q ss_pred             CCHHHHHHHHHHHHHhhCCCc---hhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHH
Q 009568          172 PSDDVREQAVWALGNVAGDSP---RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPA  248 (532)
Q Consensus       172 ~~~~v~~~a~~~L~nl~~~~~---~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~  248 (532)
                      ++..+...|+..|..++...-   +....-.+..++.++..++..+.+.+++..++.++.++.......-..-...++..
T Consensus      1149 ~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~V 1228 (1780)
T PLN03076       1149 ENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMV 1228 (1780)
T ss_pred             cchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHH
Confidence            455666666666666653211   11111223456788888887777889999999999988766422112223344444


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHH--hC----chHHHHHhhCCC-CccchhhHHHHHHHhhcCC----
Q 009568          249 LAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIE--AG----VCPRLVELLGHP-SPSVLIPALRTVGNIVTGD----  317 (532)
Q Consensus       249 L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~----~l~~L~~lL~~~-~~~v~~~al~~L~nl~~~~----  317 (532)
                      +.......++.+...+..++..+....-   ..+..  .+    .+..+..+.... +..+-..|+..|.+++..-    
T Consensus      1229 Ls~aa~d~~e~iV~lAFetl~~I~~d~f---~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~ 1305 (1780)
T PLN03076       1229 FTTAAYDDHKNIVLLAFEIIEKIIREYF---PYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGD 1305 (1780)
T ss_pred             HHHHHhCccHHHHHHHHHHHHHHHHhhh---hhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcc
Confidence            4444445677888888888776653211   11110  12    233333333332 4566677777777552100    


Q ss_pred             c-----------------------chhH-----HHhhcCchHHHH---HHhcCCCchhHHHHHHHHHHHHhc--C---CH
Q 009568          318 D-----------------------FQTQ-----CIITYGALPYLL---GLLTHSHKKSIKKEACWTISNITA--G---NR  361 (532)
Q Consensus       318 ~-----------------------~~~~-----~~~~~~~l~~L~---~lL~~~~~~~v~~~a~~~L~nl~~--~---~~  361 (532)
                      -                       ....     .......+|.|.   .+..+. +++||..|+.+|-.+..  |   ++
T Consensus      1306 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~-RlEVR~~ALqtLF~iL~~yG~~Fs~ 1384 (1780)
T PLN03076       1306 LGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDP-RPEIRKSALQVLFDTLRNHGHLFSL 1384 (1780)
T ss_pred             ccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhhccCCH
Confidence            0                       0000     000112344443   334555 89999999999887764  1   23


Q ss_pred             HHHHHHHHcCCHHHHHHHHhcC------------------c--------hhHHHHHHHHHHHhhcCCCHHHHHHHHHcCC
Q 009568          362 DQIQAVIDAGLVGPLVNLLQNA------------------E--------FDIKKEAAWAISNATSGGTHEQIKYLVREGC  415 (532)
Q Consensus       362 ~~~~~l~~~~~i~~L~~ll~~~------------------~--------~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~  415 (532)
                      +....++. +++.+++..+...                  +        .+....|+..+.++...- -+.+..++ .++
T Consensus      1385 ~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~f-Fd~L~~~L-~~~ 1461 (1780)
T PLN03076       1385 PLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKF-YPTVNPLL-KKV 1461 (1780)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-HHH
Confidence            33333444 3555555555421                  0        122233333333333310 01122222 245


Q ss_pred             hHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 009568          416 IKPLCDLFVCPDPRIVTVCLEGLENILKVGE  446 (532)
Q Consensus       416 l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~  446 (532)
                      +..|..++..++..+......+|.+++..+.
T Consensus      1462 l~ll~~ci~q~n~~la~ig~~~l~~li~~ng 1492 (1780)
T PLN03076       1462 LMLLVSFIKRPHQSLAGIGIAAFVRLMSNAG 1492 (1780)
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHHHHHHhh
Confidence            6667777778889999999999999886544

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=93.85  E-value=1.3  Score=43.59  Aligned_cols=128  Identities=19%  Similarity=0.176  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhC------CCCccchhhHHHHHHHhhcCCcc------------
Q 009568          258 EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG------HPSPSVLIPALRTVGNIVTGDDF------------  319 (532)
Q Consensus       258 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~------~~~~~v~~~al~~L~nl~~~~~~------------  319 (532)
                      ..-+..|+..+..++.........++.    ..+..++.      ..++.-+..|++.++.++.....            
T Consensus       225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~----~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v  300 (370)
T PF08506_consen  225 DTRRRAACDFLRSLCKKFEKQVTSILM----QYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELV  300 (370)
T ss_dssp             -SHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS
T ss_pred             CCcHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccc
Confidence            345677777888887543332222221    22223332      34667788899999999875532            


Q ss_pred             hhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHH
Q 009568          320 QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAI  395 (532)
Q Consensus       320 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL  395 (532)
                      ....++...++|-|. --.+. .|-++..|++.+..+-..-+.  +.+.  +++|.++..|.+++.-|...|+.|+
T Consensus       301 ~v~~Ff~~~v~peL~-~~~~~-~piLka~aik~~~~Fr~~l~~--~~l~--~~~~~l~~~L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  301 DVVDFFSQHVLPELQ-PDVNS-HPILKADAIKFLYTFRNQLPK--EQLL--QIFPLLVNHLQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             -HHHHHHHHTCHHHH--SS-S--HHHHHHHHHHHHHHGGGS-H--HHHH--HHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred             cHHHHHHHHhHHHhc-ccCCC-CcchHHHHHHHHHHHHhhCCH--HHHH--HHHHHHHHHhCCCCcchhhhhhhhC
Confidence            123334445555554 11133 678999999999998764332  1222  3789999999999999999998875

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.84  E-value=11  Score=44.03  Aligned_cols=274  Identities=16%  Similarity=0.143  Sum_probs=143.9

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC-CCCCcc
Q 009568          162 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPFD  240 (532)
Q Consensus       162 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~  240 (532)
                      +..++..|..+++..+..+..+++.++...+.. ..  -.+..+.++.-+....++-.+.--..++..+-++. ......
T Consensus       878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~-~f--~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~q  954 (2067)
T KOG1822|consen  878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSA-PF--VASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQ  954 (2067)
T ss_pred             HHHHhhhhccCChHHHHHHHHHHHHHHHhcccc-ch--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCch
Confidence            344455566678888888888888887543321 11  12235566666645556666666667777777665 444555


Q ss_pred             cccchHHHHHHhhcCC-CHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCC-CC--ccchhh-----------
Q 009568          241 QVRPALPALAQLVHSN-DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PS--PSVLIP-----------  305 (532)
Q Consensus       241 ~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~--~~v~~~-----------  305 (532)
                      .....+..+..+-+++ ++.|+..++.++..+.+.........+. ..+..+..+|.. +.  .++...           
T Consensus       955 hl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve-~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~ 1033 (2067)
T KOG1822|consen  955 HLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVE-PTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDE 1033 (2067)
T ss_pred             hcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHH-HHHHHHHHHcCCCCcchhhhhhhhccccccchhH
Confidence            5566677777777665 5699999999999998665444332222 333333444432 21  111111           


Q ss_pred             --HHHHHHHhhcCCcc-hhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc
Q 009568          306 --ALRTVGNIVTGDDF-QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN  382 (532)
Q Consensus       306 --al~~L~nl~~~~~~-~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~  382 (532)
                        ...++|+=..++.. ..-.-+..-.+-...-++.++ ++.++.++..++-++--..+.+...   .-+|+.|+.++.+
T Consensus      1034 ~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~-d~lnqa~ai~clqqlhlFapr~~n~---~~lV~~L~~~l~s 1109 (2067)
T KOG1822|consen 1034 DALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHS-DPLNQAAAIKCLQQLHLFAPRHVNL---DSLVLQLCSLLSS 1109 (2067)
T ss_pred             HHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhhcchhccH---HHHHHHHHHHhcc
Confidence              12222222222221 011111222233333344555 8889999999988875433321110   1145566665555


Q ss_pred             CchhHHHHHHHHHHHhhcCCCHHHHH-----------------HHH-HcCChHHHHhhcC-CCCHHHHHHHHHHHHHHHH
Q 009568          383 AEFDIKKEAAWAISNATSGGTHEQIK-----------------YLV-REGCIKPLCDLFV-CPDPRIVTVCLEGLENILK  443 (532)
Q Consensus       383 ~~~~v~~~a~~aL~nl~~~~~~~~~~-----------------~l~-~~~~l~~L~~lL~-~~d~~v~~~al~~L~~l~~  443 (532)
                      ...-.|+....++..+......+.+.                 ... +.|+--.+..+|+ ..|.+.+..+++.+.+++.
T Consensus      1110 ~~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~l~~~I~~tl~~~~~ 1189 (2067)
T KOG1822|consen 1110 SYLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNKLLKNILETLSRMLN 1189 (2067)
T ss_pred             hhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence            43334343333333333221111100                 011 3344445556665 4677788888888888554

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=93.81  E-value=1.7  Score=38.29  Aligned_cols=146  Identities=16%  Similarity=0.151  Sum_probs=94.1

Q ss_pred             cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (532)
Q Consensus        75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  154 (532)
                      -++.+++...+++..++..|+..+..++...=-.|..      .+|.++.+..+++ +.++..|...+..+....+....
T Consensus         9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~------cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~~s~v~   81 (187)
T PF12830_consen    9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQ------CVPTLIALETSPN-PSIRSRAYQLLKELHEKHESLVE   81 (187)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHH------HHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHhHHHHH
Confidence            3678888888999999999999999998764223332      6899999999988 99999999999999886655444


Q ss_pred             HHHhCCChHHHHHhhCC--CCHH--H---HHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhh-------hhHHH
Q 009568          155 VVIDHGAVPIFVKLLAS--PSDD--V---REQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA-------KLSML  220 (532)
Q Consensus       155 ~i~~~g~i~~L~~lL~~--~~~~--v---~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~-------~~~~~  220 (532)
                      .-...| +..-..+-..  .+..  .   ....+..+..+...+...|..+     +..+++.+....       ...-.
T Consensus        82 ~~~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l  155 (187)
T PF12830_consen   82 SRYSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDL  155 (187)
T ss_pred             HHHHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHH
Confidence            433333 2222222111  1111  1   4555666777777666666654     566676664321       23344


Q ss_pred             HHHHHHhhhccCC
Q 009568          221 RNATWTLSNFCRG  233 (532)
Q Consensus       221 ~~a~~~L~~L~~~  233 (532)
                      ..++++..||+.-
T Consensus       156 ~~~~Fla~nLA~l  168 (187)
T PF12830_consen  156 DFLLFLAENLATL  168 (187)
T ss_pred             HHHHHHHHHHhcC
Confidence            5555555566554

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=93.69  E-value=0.95  Score=39.78  Aligned_cols=106  Identities=16%  Similarity=0.110  Sum_probs=73.4

Q ss_pred             hCCCCccchhhHHHHHHHhhcCCcchhHHHhh----------------cCchHHHHHHhcCC-----CchhHHHHHHHHH
Q 009568          295 LGHPSPSVLIPALRTVGNIVTGDDFQTQCIIT----------------YGALPYLLGLLTHS-----HKKSIKKEACWTI  353 (532)
Q Consensus       295 L~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~----------------~~~l~~L~~lL~~~-----~~~~v~~~a~~~L  353 (532)
                      +.+++......++..|+|++.... ....+++                ...+..|+..+..+     ....-....+.++
T Consensus         4 i~~~~~~~adl~~MLLsNlT~~~~-~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl   82 (192)
T PF04063_consen    4 ITDPKSPLADLACMLLSNLTRSDS-GCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVL   82 (192)
T ss_pred             ecCCCcchHHHHHHHHHHhccchH-HHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHH
Confidence            344556677778888999987544 3332322                23567777777551     1334556788999


Q ss_pred             HHHhcCCHHHHHHHHHc--CC--HHHHHHHHhcCchhHHHHHHHHHHHhhcCC
Q 009568          354 SNITAGNRDQIQAVIDA--GL--VGPLVNLLQNAEFDIKKEAAWAISNATSGG  402 (532)
Q Consensus       354 ~nl~~~~~~~~~~l~~~--~~--i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~  402 (532)
                      +|++.. ++.++.+++.  +.  +..|+.++++.+..-|.-++.+|.|++...
T Consensus        83 ~NlS~~-~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~  134 (192)
T PF04063_consen   83 ANLSQL-PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDT  134 (192)
T ss_pred             HHhcCC-HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccH
Confidence            999875 6677777743  34  778888888887777888999999999853

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=93.57  E-value=4.2  Score=37.23  Aligned_cols=203  Identities=16%  Similarity=0.101  Sum_probs=113.9

Q ss_pred             HHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHH
Q 009568          205 IPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIE  284 (532)
Q Consensus       205 ~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~  284 (532)
                      +.|+.-+.+..++++....+.+|..++..+   . .....++..+..+...+..+...-+...+..+....+...     
T Consensus         3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~---~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-----   73 (234)
T PF12530_consen    3 PLLLYKLGKISDPELQLPLLEALPSLACHK---N-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-----   73 (234)
T ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHhccC---c-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-----
Confidence            344444556778899999999999999875   1 3345566777777777777665556666666655444222     


Q ss_pred             hCchHHHHHh-----h---C--CCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHh-cCCCchhHHHHHHHHH
Q 009568          285 AGVCPRLVEL-----L---G--HPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLL-THSHKKSIKKEACWTI  353 (532)
Q Consensus       285 ~~~l~~L~~l-----L---~--~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~~v~~~a~~~L  353 (532)
                       +.+..++..     .   .  +...........++..+|...++...     .+++.+..+| .+. ++.++..+...|
T Consensus        74 -~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~-----~ll~~ls~~L~~~~-~~~~~alale~l  146 (234)
T PF12530_consen   74 -PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGV-----DLLPLLSGCLNQSC-DEVAQALALEAL  146 (234)
T ss_pred             -HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHH-----HHHHHHHHHHhccc-cHHHHHHHHHHH
Confidence             223333332     1   1  11233444445677777776665222     4577888888 666 888899999999


Q ss_pred             HHHhcCCHHHHHHHHHcCCHHHHHHHHhcC-chhHHHHHHHHHHHhhcCC-CHHHHHHHHHcCChHHHHhhcCCCCHH
Q 009568          354 SNITAGNRDQIQAVIDAGLVGPLVNLLQNA-EFDIKKEAAWAISNATSGG-THEQIKYLVREGCIKPLCDLFVCPDPR  429 (532)
Q Consensus       354 ~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~-~~~~~~~l~~~~~l~~L~~lL~~~d~~  429 (532)
                      ..++...--.+..     ....+..-+..+ .+.+.+..+..+..+..+. +.+.... ....++..+-++..+.+.+
T Consensus       147 ~~Lc~~~vvd~~s-----~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~-~~~~~l~~lW~~~~~~~~~  218 (234)
T PF12530_consen  147 APLCEAEVVDFYS-----AWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEE-LKRQILQLLWEYTSSSDVN  218 (234)
T ss_pred             HHHHHHhhccHHH-----HHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhH-HHHHHHHHHHhhccccccc
Confidence            9998421111111     122233333332 4455444333333332222 2233333 2335677777777766643

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=93.52  E-value=1.9  Score=44.83  Aligned_cols=173  Identities=14%  Similarity=0.107  Sum_probs=104.2

Q ss_pred             cccchHHHHHHhhcCCCH-HHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcc
Q 009568          241 QVRPALPALAQLVHSNDE-EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDF  319 (532)
Q Consensus       241 ~~~~~l~~L~~lL~~~d~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~  319 (532)
                      ....++|.|...++..++ ++....+.-+--|...-+   ..-+...+++.|..-+.+.+..++..++..+...+..-|.
T Consensus       346 ~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~---~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~  422 (700)
T KOG2137|consen  346 FGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTP---PEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV  422 (700)
T ss_pred             hhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCC---hHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH
Confidence            345667777777774332 222111111111111111   1123347788888888999999999999999999876552


Q ss_pred             hhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhh
Q 009568          320 QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNAT  399 (532)
Q Consensus       320 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~  399 (532)
                         ..+..-++|.|..+.....+..++..++-|++-+..    .++...-...+..+...+...++.+......+..++.
T Consensus       423 ---~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q----~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~  495 (700)
T KOG2137|consen  423 ---PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ----RLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALA  495 (700)
T ss_pred             ---HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence               345667888888876555478899999999998872    1222111123455566666678888887777777776


Q ss_pred             cCCCHHHHHHHHHcCChHHHHhhcCC
Q 009568          400 SGGTHEQIKYLVREGCIKPLCDLFVC  425 (532)
Q Consensus       400 ~~~~~~~~~~l~~~~~l~~L~~lL~~  425 (532)
                      ......  ..+....+++.++-+...
T Consensus       496 ~~~~~g--~ev~~~~VlPlli~ls~~  519 (700)
T KOG2137|consen  496 LIIYSG--VEVMAENVLPLLIPLSVA  519 (700)
T ss_pred             hhcccc--eeeehhhhhhhhhhhhhc
Confidence            532211  222334566666655543

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.49  E-value=1.2  Score=46.11  Aligned_cols=186  Identities=12%  Similarity=0.085  Sum_probs=115.8

Q ss_pred             hHHHHHHhhcCCCHHHHHHHHHHHHHhcc--CCh---hHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcc
Q 009568          245 ALPALAQLVHSNDEEVLTDACWALSYLSD--GTN---DKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDF  319 (532)
Q Consensus       245 ~l~~L~~lL~~~d~~v~~~a~~~L~~l~~--~~~---~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~  319 (532)
                      .-|.|.+-|+..+..|+.+|+..+.++--  +++   +..+.+++ .=...+..+|.++-+.+|..|..-+..+.+..  
T Consensus       175 ~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f--  251 (1005)
T KOG1949|consen  175 YKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITSKF--  251 (1005)
T ss_pred             HhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH--
Confidence            33567778888999999999999988752  211   22344444 34677889999999999999988777776522  


Q ss_pred             hhHHHhhcC----chHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHH
Q 009568          320 QTQCIITYG----ALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAI  395 (532)
Q Consensus       320 ~~~~~~~~~----~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL  395 (532)
                        ..++...    ++..+..-+.......||-.....|-.+......  ..+++. ++|.|=..|.+....||..+...|
T Consensus       252 --We~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~s--h~~le~-~Lpal~~~l~D~se~VRvA~vd~l  326 (1005)
T KOG1949|consen  252 --WEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLS--HPLLEQ-LLPALRYSLHDNSEKVRVAFVDML  326 (1005)
T ss_pred             --HHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccc--hhHHHH-HHHhcchhhhccchhHHHHHHHHH
Confidence              1233333    3333333333332567888888888887764221  233333 566777778888889999998888


Q ss_pred             HHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 009568          396 SNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENIL  442 (532)
Q Consensus       396 ~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~  442 (532)
                      ..+-...    ...+..---.+.++.-|..++..+....+..|.+.+
T Consensus       327 l~ik~vr----a~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~  369 (1005)
T KOG1949|consen  327 LKIKAVR----AAKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSF  369 (1005)
T ss_pred             HHHHhhh----hhhhhccccHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence            7774321    111122223556666676666666555555444443

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=93.42  E-value=0.86  Score=46.00  Aligned_cols=99  Identities=17%  Similarity=0.169  Sum_probs=73.2

Q ss_pred             CchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc--CCHHH
Q 009568          286 GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA--GNRDQ  363 (532)
Q Consensus       286 ~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~  363 (532)
                      +++.+++..+.+++..++..++.+|+-++..-.+ .+..+-++++..|..-+-+. .+.||.+|..+|+.+-.  ++++.
T Consensus        91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DR-E~~VR~eAv~~L~~~Qe~~~neen  168 (885)
T COG5218          91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDR-EKAVRREAVKVLCYYQEMELNEEN  168 (885)
T ss_pred             HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhccCChHH
Confidence            6777788888889999999999999988864442 33445558888888888777 88999999999999865  44443


Q ss_pred             HHHHHHcCCHHHHHHHHhcC-chhHHHHHHH
Q 009568          364 IQAVIDAGLVGPLVNLLQNA-EFDIKKEAAW  393 (532)
Q Consensus       364 ~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~  393 (532)
                      .       +...|..+++.+ +.+||+.|+.
T Consensus       169 ~-------~~n~l~~~vqnDPS~EVRr~all  192 (885)
T COG5218         169 R-------IVNLLKDIVQNDPSDEVRRLALL  192 (885)
T ss_pred             H-------HHHHHHHHHhcCcHHHHHHHHHH
Confidence            2       344566666654 5678876653

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=93.42  E-value=1.9  Score=43.36  Aligned_cols=157  Identities=13%  Similarity=0.101  Sum_probs=111.0

Q ss_pred             cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCC---HHHHHHHHHHHHHHhcCChh
Q 009568           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDY---PQLQFEAAWALTNIASGTSE  151 (532)
Q Consensus        75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~---~~~~~~a~~~L~~l~~~~~~  151 (532)
                      ....+.+.+.+++...+..|+..+..+...  ...+.+++...++..|.+++.++..   .++...++.++..+-...- 
T Consensus        84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d--~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-  160 (713)
T KOG2999|consen   84 YAKRIMEILTEGNNISKMEALKELDSLSLD--PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-  160 (713)
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHhhcccc--HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-
Confidence            457788899999999999999988887653  4558889999999999999988751   3555555556555544221 


Q ss_pred             hHHHHHhCCChHHHHHhhC--CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhh
Q 009568          152 NTKVVIDHGAVPIFVKLLA--SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSN  229 (532)
Q Consensus       152 ~~~~i~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~  229 (532)
                      ..-..+...+|.....+..  ..+..+-..|+..|-++...++..+..+.+.-.+..|+..+ +..+..+...+...+..
T Consensus       161 vsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hl-q~~n~~i~~~aial~na  239 (713)
T KOG2999|consen  161 VSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHL-QVSNQRIQTCAIALLNA  239 (713)
T ss_pred             eeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHH-HhcchHHHHHHHHHHHH
Confidence            1111122233344444432  24566778888899998887777888888888999999999 67777777778777777


Q ss_pred             ccCCCC
Q 009568          230 FCRGKP  235 (532)
Q Consensus       230 L~~~~~  235 (532)
                      +....+
T Consensus       240 l~~~a~  245 (713)
T KOG2999|consen  240 LFRKAP  245 (713)
T ss_pred             HHhhCC
Confidence            776654

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=93.31  E-value=0.36  Score=36.65  Aligned_cols=84  Identities=18%  Similarity=0.241  Sum_probs=63.9

Q ss_pred             cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (532)
Q Consensus        75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  154 (532)
                      .+...+..|.++.+.+|-.|+..|++++... +  ....-..+++..+...|++++ +-+-..|+.+|..++...++   
T Consensus         4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~-~--~~~~~~~~il~l~l~~L~d~D-syVYL~aI~~L~~La~~~p~---   76 (92)
T PF10363_consen    4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESK-S--EPVIDIPKILDLFLSQLKDED-SYVYLNAIKGLAALADRHPD---   76 (92)
T ss_pred             HHHHHHHHccCCCcchHHHHHHHHHHHHHcC-C--cchhhHHHHHHHHHHHcCCCC-chHHHHHHHHHHHHHHHChH---
Confidence            4677888899999999999999999999864 3  111223467888899999998 89999999999999985443   


Q ss_pred             HHHhCCChHHHHHhhC
Q 009568          155 VVIDHGAVPIFVKLLA  170 (532)
Q Consensus       155 ~i~~~g~i~~L~~lL~  170 (532)
                           .+++.|++...
T Consensus        77 -----~vl~~L~~~y~   87 (92)
T PF10363_consen   77 -----EVLPILLDEYA   87 (92)
T ss_pred             -----HHHHHHHHHHh
Confidence                 23455655443

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=93.23  E-value=9.5  Score=37.76  Aligned_cols=267  Identities=12%  Similarity=0.050  Sum_probs=135.6

Q ss_pred             CHHHHHHHHHHHHHhhCCCchhHHHHHhcC---ChHHHHHHhh-hhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHH
Q 009568          173 SDDVREQAVWALGNVAGDSPRCRDLVLSQG---ALIPLLAQLN-ERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPA  248 (532)
Q Consensus       173 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~---~l~~L~~ll~-~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~  248 (532)
                      +..+..+|+.+|+.+..+..- -..+-...   ++...+..+. .+.+..+....+|+|+.=--............++..
T Consensus        59 ~~~L~~qALkll~~~l~~~~i-~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~  137 (372)
T PF12231_consen   59 DSRLVIQALKLLGFFLYHPEI-VSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAA  137 (372)
T ss_pred             chHHHHHHHHHHHHHHccHHH-HhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHH
Confidence            678999999999998654322 11111111   2333444442 334567777788887652222111111112223333


Q ss_pred             HHHhhc-CCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhc--CCcc-hh---
Q 009568          249 LAQLVH-SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT--GDDF-QT---  321 (532)
Q Consensus       249 L~~lL~-~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~--~~~~-~~---  321 (532)
                      +..+-+ -+...+....+.++.++....+.....-.+ .-++.++..+-+....++..|..++..+..  +... ..   
T Consensus       138 l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~-~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~  216 (372)
T PF12231_consen  138 LHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHAD-IWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSV  216 (372)
T ss_pred             HHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHH
Confidence            333332 346678888999999998776654332222 357777777777777777776555544432  1111 11   


Q ss_pred             HHHhhc----C-----chHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH-HHHHHHHcCCHHHHHHHHhcCchhHHHHH
Q 009568          322 QCIITY----G-----ALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD-QIQAVIDAGLVGPLVNLLQNAEFDIKKEA  391 (532)
Q Consensus       322 ~~~~~~----~-----~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~i~~L~~ll~~~~~~v~~~a  391 (532)
                      ...++.    +     +.+.+..++.+. +.....--.|..--+.-+++. .-...+ ...+...-..+.++++.+|..|
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~L~~mi~~~-~~~~~a~~iW~~~i~LL~~~~~~~w~~~-n~wL~v~e~cFn~~d~~~k~~A  294 (372)
T PF12231_consen  217 LEDLQRSLENGKLIQLYCERLKEMIKSK-DEYKLAMQIWSVVILLLGSSRLDSWEHL-NEWLKVPEKCFNSSDPQVKIQA  294 (372)
T ss_pred             HHHhccccccccHHHHHHHHHHHHHhCc-CCcchHHHHHHHHHHHhCCchhhccHhH-hHHHHHHHHHhcCCCHHHHHHH
Confidence            111221    2     223366666663 333333334443333323221 111111 1234444456677899999999


Q ss_pred             HHHHHHhhcCC--CHHHHHHHHHcCChHHHHhhcCCC-CH----HHHHHHHHHHHHHHHh
Q 009568          392 AWAISNATSGG--THEQIKYLVREGCIKPLCDLFVCP-DP----RIVTVCLEGLENILKV  444 (532)
Q Consensus       392 ~~aL~nl~~~~--~~~~~~~l~~~~~l~~L~~lL~~~-d~----~v~~~al~~L~~l~~~  444 (532)
                      ..|-..++...  +.......+.- +..++...++.. ..    .+...++..+.+++-+
T Consensus       295 ~~aW~~liy~~~~~~~~~~k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly~  353 (372)
T PF12231_consen  295 FKAWRRLIYASNPNELTSPKRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLYY  353 (372)
T ss_pred             HHHHHHHHHHhcCCccccHHHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHHH
Confidence            88777766421  11111111111 234444445432 22    6777888888888744

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=93.19  E-value=6.7  Score=35.91  Aligned_cols=140  Identities=24%  Similarity=0.220  Sum_probs=92.1

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHH
Q 009568          119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV  198 (532)
Q Consensus       119 i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~  198 (532)
                      +|.|+.-+....++..+...+.+|..++..+......     ++..|..+...+....+..+.+.+..+...++..-   
T Consensus         2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---   73 (234)
T PF12530_consen    2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---   73 (234)
T ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence            5566664554445999999999999999844222222     24566666666667776677788888765544321   


Q ss_pred             HhcCChHHHHHHh---------hhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhh-cCCCHHHHHHHHHHH
Q 009568          199 LSQGALIPLLAQL---------NERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLV-HSNDEEVLTDACWAL  268 (532)
Q Consensus       199 ~~~~~l~~L~~ll---------~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L  268 (532)
                         +.+..++..+         ..+...+.......++..+|...|.    ....+++.+..++ ++.++.++..++.++
T Consensus        74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l  146 (234)
T PF12530_consen   74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEAL  146 (234)
T ss_pred             ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence               2344444331         0122334445556788888887655    4567788888888 788888999999999


Q ss_pred             HHhcc
Q 009568          269 SYLSD  273 (532)
Q Consensus       269 ~~l~~  273 (532)
                      ..++.
T Consensus       147 ~~Lc~  151 (234)
T PF12530_consen  147 APLCE  151 (234)
T ss_pred             HHHHH
Confidence            99983

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=93.13  E-value=9.2  Score=37.84  Aligned_cols=307  Identities=16%  Similarity=0.145  Sum_probs=157.0

Q ss_pred             cCCChHHHHHHHHHHHHHhcCCCC-CchhHhhhCCcHHHHHHhhc----C------CCCHHHHHHHHHHHHHHhcCChhh
Q 009568           84 WSDDSSLQLEATTQFRKLLSIERS-PPIEEVIQSGVVPRFVEFLM----R------EDYPQLQFEAAWALTNIASGTSEN  152 (532)
Q Consensus        84 ~s~~~~~~~~a~~~l~~l~~~~~~-~~~~~~i~~g~i~~Lv~lL~----~------~~~~~~~~~a~~~L~~l~~~~~~~  152 (532)
                      .+.+...+..|-..|.+.+....+ +....+.+  -++.|+++++    .      +.+..+..+|+.+|+.+.. +++.
T Consensus         3 a~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~--k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~-~~~i   79 (372)
T PF12231_consen    3 AGSDRSSRLDAYMTLNNALKAYDNLPDRQALQD--KMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLY-HPEI   79 (372)
T ss_pred             CcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHc-cHHH
Confidence            345556677777777777765433 33333332  3455555443    1      1126888999999999887 4544


Q ss_pred             HHHHHhCC---ChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhh----hhhhHHHHHH
Q 009568          153 TKVVIDHG---AVPIFVKLLAS--PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE----RAKLSMLRNA  223 (532)
Q Consensus       153 ~~~i~~~g---~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~----~~~~~~~~~a  223 (532)
                      ...+-+.-   ++...+..+.+  .+..+...++|+|..--. +    ..++....+..++..+..    -.+..+....
T Consensus        80 ~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f-~----~~~~~~~~~~~l~~~l~~i~~~~~s~si~~er  154 (372)
T PF12231_consen   80 VSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKF-S----PKIMTSDRVERLLAALHNIKNRFPSKSIISER  154 (372)
T ss_pred             HhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC-C----CcccchhhHHHHHHHHHHhhccCCchhHHHHH
Confidence            44333221   33445555544  345677777777765321 1    123344445555555421    2345677777


Q ss_pred             HHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhcc--CChhHHH----HHHHh----C-----ch
Q 009568          224 TWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSD--GTNDKIQ----AVIEA----G-----VC  288 (532)
Q Consensus       224 ~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~--~~~~~~~----~~~~~----~-----~l  288 (532)
                      +.++.+|....|..-......-+|.++..+-+....++..|...+..+..  +......    ...+.    +     +.
T Consensus       155 L~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~  234 (372)
T PF12231_consen  155 LNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYC  234 (372)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHH
Confidence            77888877765433333334456677666666666676665555444331  1111111    11111    1     33


Q ss_pred             HHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc---CCHHHHH
Q 009568          289 PRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA---GNRDQIQ  365 (532)
Q Consensus       289 ~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~~~~~~  365 (532)
                      +.|..++.+.+.....+-+|..--+.-+......--.-...+...-..++++ ++.+|..|..+-..+..   .++....
T Consensus       235 ~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~-d~~~k~~A~~aW~~liy~~~~~~~~~~  313 (372)
T PF12231_consen  235 ERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSS-DPQVKIQAFKAWRRLIYASNPNELTSP  313 (372)
T ss_pred             HHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhcCCccccH
Confidence            3455566663444443434443333323321110111124556666677888 99999988776665543   2222222


Q ss_pred             HHHHcCCHHHHHHHHhcC-ch----hHHHHHHHHHHHhhc
Q 009568          366 AVIDAGLVGPLVNLLQNA-EF----DIKKEAAWAISNATS  400 (532)
Q Consensus       366 ~l~~~~~i~~L~~ll~~~-~~----~v~~~a~~aL~nl~~  400 (532)
                      ..+.. +..++...+... ..    +++..+...++++..
T Consensus       314 k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly  352 (372)
T PF12231_consen  314 KRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLY  352 (372)
T ss_pred             HHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHH
Confidence            22222 222333334432 33    566777777777654

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=93.10  E-value=2.3  Score=41.94  Aligned_cols=119  Identities=13%  Similarity=0.171  Sum_probs=89.6

Q ss_pred             HHHHHHHHhc--CCCCCchhHhhh-CCcHHHHHHhhcCCCC--HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHh
Q 009568           94 ATTQFRKLLS--IERSPPIEEVIQ-SGVVPRFVEFLMREDY--PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKL  168 (532)
Q Consensus        94 a~~~l~~l~~--~~~~~~~~~~i~-~g~i~~Lv~lL~~~~~--~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l  168 (532)
                      -++.+.++..  .......+.+++ ..++..|..++.+...  +.+-..|+.++..+....|.....+.+.|+++.+++.
T Consensus        80 lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~  159 (379)
T PF06025_consen   80 LLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDA  159 (379)
T ss_pred             HHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHH
Confidence            3344445554  222344555677 5667777777776542  6888899999999999899999999999999999998


Q ss_pred             hC-C---CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhh
Q 009568          169 LA-S---PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE  213 (532)
Q Consensus       169 L~-~---~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~  213 (532)
                      +. .   ++.++....-.+|+.||-.... .+.+.+.+.+..+++++..
T Consensus       160 i~~~~i~~s~e~l~~lP~~l~AicLN~~G-l~~~~~~~~l~~~f~if~s  207 (379)
T PF06025_consen  160 ITAKGILPSSEVLTSLPNVLSAICLNNRG-LEKVKSSNPLDKLFEIFTS  207 (379)
T ss_pred             HhccCCCCcHHHHHHHHHHHhHHhcCHHH-HHHHHhcChHHHHHHHhCC
Confidence            87 4   5678888788889999877665 5667778999999999843

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=93.01  E-value=0.88  Score=39.98  Aligned_cols=123  Identities=15%  Similarity=0.097  Sum_probs=79.5

Q ss_pred             CCCHHHHHHHHHHHHHhccCChhHHHHHH----------------HhCchHHHHHhhCC------CCccchhhHHHHHHH
Q 009568          255 SNDEEVLTDACWALSYLSDGTNDKIQAVI----------------EAGVCPRLVELLGH------PSPSVLIPALRTVGN  312 (532)
Q Consensus       255 ~~d~~v~~~a~~~L~~l~~~~~~~~~~~~----------------~~~~l~~L~~lL~~------~~~~v~~~al~~L~n  312 (532)
                      .++......+|..|+|++...... ..++                +...+..|+.++..      +...-......++.|
T Consensus         6 ~~~~~~adl~~MLLsNlT~~~~~~-~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N   84 (192)
T PF04063_consen    6 DPKSPLADLACMLLSNLTRSDSGC-EKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN   84 (192)
T ss_pred             CCCcchHHHHHHHHHHhccchHHH-HHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence            344445666777788887654332 2122                12356667777644      234456667899999


Q ss_pred             hhcCCcchhHHHhhc--Cc--hHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---cCCHHHHHHHHh
Q 009568          313 IVTGDDFQTQCIITY--GA--LPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID---AGLVGPLVNLLQ  381 (532)
Q Consensus       313 l~~~~~~~~~~~~~~--~~--l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~ll~  381 (532)
                      ++... ..++.+++.  +.  +..|+..+.+. +..-|..++.+|.|+|.....+ ..++.   .+++|.|+--+.
T Consensus        85 lS~~~-~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen   85 LSQLP-EGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             hcCCH-HHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhcc
Confidence            99754 466677654  33  77888888888 8777888999999999875555 34443   356666665554

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=92.91  E-value=7.4  Score=38.66  Aligned_cols=233  Identities=17%  Similarity=0.182  Sum_probs=134.5

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCCc---hhHHHHHhcCChHHHHHHhhh------hhhhHHHHHHHHHhhhccCC
Q 009568          163 PIFVKLLASPSDDVREQAVWALGNVAGDSP---RCRDLVLSQGALIPLLAQLNE------RAKLSMLRNATWTLSNFCRG  233 (532)
Q Consensus       163 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~---~~~~~~~~~~~l~~L~~ll~~------~~~~~~~~~a~~~L~~L~~~  233 (532)
                      ..+..++...+.+-+-.++.....++....   ..+..+.+.-+.+.+-+++..      .++.-.+..++..|..+|+.
T Consensus        14 ~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~   93 (698)
T KOG2611|consen   14 DDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV   93 (698)
T ss_pred             hhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence            335666666777777788888888874332   235556666566666677642      23444556677888899998


Q ss_pred             CCCCCcccccchHHHHHHhhcCC-CHH------HHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccc-hhh
Q 009568          234 KPQPPFDQVRPALPALAQLVHSN-DEE------VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSV-LIP  305 (532)
Q Consensus       234 ~~~~~~~~~~~~l~~L~~lL~~~-d~~------v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v-~~~  305 (532)
                      +.-.....+-.-+|.|..++... |++      +..++..+|..++...... ..++..|.++.+.++-.-++... ..-
T Consensus        94 pElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~-~~Lia~G~~~~~~Q~y~~~~~~~d~al  172 (698)
T KOG2611|consen   94 PELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGL-MTLIASGGLRVIAQMYELPDGSHDMAL  172 (698)
T ss_pred             hhhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchh-HHHHhcCchHHHHHHHhCCCCchhHHH
Confidence            75555555667788888888643 333      6788888888887765544 67888899999998765544332 222


Q ss_pred             HHHHHHHhhcCCc---chhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH--HHHHHHH----cCCHHHH
Q 009568          306 ALRTVGNIVTGDD---FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD--QIQAVID----AGLVGPL  376 (532)
Q Consensus       306 al~~L~nl~~~~~---~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~--~~~~l~~----~~~i~~L  376 (532)
                      ++.++--...+.+   +....+..  ++..+..-+... +...+.+.|..|+.+....+.  .+..+..    ..+..-+
T Consensus       173 al~Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~-~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~~l~~G~  249 (698)
T KOG2611|consen  173 ALKVLLLLVSKLDCWSETIERFLA--LIAAVARDFAVL-HNALKFELCHLLSAVLSSEYSELLHEPLRSMNWADYLRTGV  249 (698)
T ss_pred             HHHHHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHh-hhHHHHHHHHHHHHHHhCChHHhccChhhhcchHHHHHHHH
Confidence            3333333333222   11111111  233444444444 567888999999976653221  1111111    1122344


Q ss_pred             HHHHhcC-chhHHHHHHHHHHHhh
Q 009568          377 VNLLQNA-EFDIKKEAAWAISNAT  399 (532)
Q Consensus       377 ~~ll~~~-~~~v~~~a~~aL~nl~  399 (532)
                      ..+|++. .+.-|..|+....|+.
T Consensus       250 ~~IL~~kv~p~qr~pAL~Laa~~~  273 (698)
T KOG2611|consen  250 VAILQNKVAPSQRLPALILAANMM  273 (698)
T ss_pred             HHHHhcccCchhcChHHHHHHHHH
Confidence            5566654 4444555555555543

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=92.86  E-value=4.4  Score=43.32  Aligned_cols=198  Identities=17%  Similarity=0.119  Sum_probs=109.2

Q ss_pred             cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC----CCHHHHHHHHHHHHHhhCCCch
Q 009568          118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS----PSDDVREQAVWALGNVAGDSPR  193 (532)
Q Consensus       118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~nl~~~~~~  193 (532)
                      .+..+.+++....-  --..|++.|..+......-...     .+..+..++.+    .++.++..|+.+++.++.....
T Consensus       396 av~~i~~~I~~~~~--~~~ea~~~l~~l~~~~~~Pt~e-----~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~  468 (618)
T PF01347_consen  396 AVKFIKDLIKSKKL--TDDEAAQLLASLPFHVRRPTEE-----LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV  468 (618)
T ss_dssp             HHHHHHHHHHTT-S---HHHHHHHHHHHHHT-----HH-----HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCC--CHHHHHHHHHHHHhhcCCCCHH-----HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence            45566777776541  1233455555554422122222     23555566654    4677888888888887532111


Q ss_pred             h---------HHHHHhcCChHHHHHHhh---hhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCC---CH
Q 009568          194 C---------RDLVLSQGALIPLLAQLN---ERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN---DE  258 (532)
Q Consensus       194 ~---------~~~~~~~~~l~~L~~ll~---~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~---d~  258 (532)
                      .         .........++.+...+.   ...+..-+..++.+|+|+...          ..++.+.+++...   +.
T Consensus       469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~----------~~i~~l~~~i~~~~~~~~  538 (618)
T PF01347_consen  469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP----------ESIPVLLPYIEGKEEVPH  538 (618)
T ss_dssp             T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G----------GGHHHHHTTSTTSS-S-H
T ss_pred             cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc----------hhhHHHHhHhhhccccch
Confidence            1         111222345667777664   233557788889999998653          5778888888766   67


Q ss_pred             HHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCC--CCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHH
Q 009568          259 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH--PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGL  336 (532)
Q Consensus       259 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~l  336 (532)
                      .++..|+|++..+....++.+        .+.++.++.+  .+.++|..|+.+|..   ..+..       ..+..+...
T Consensus       539 ~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~---~~P~~-------~~l~~i~~~  600 (618)
T PF01347_consen  539 FIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTEDPEVRIAAYLILMR---CNPSP-------SVLQRIAQS  600 (618)
T ss_dssp             HHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHHHH---T---H-------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHHHh---cCCCH-------HHHHHHHHH
Confidence            899999999998876665443        3555666644  356688888766643   22211       235567777


Q ss_pred             hcCCCchhHHHHHH
Q 009568          337 LTHSHKKSIKKEAC  350 (532)
Q Consensus       337 L~~~~~~~v~~~a~  350 (532)
                      +....+..|.....
T Consensus       601 l~~E~~~QV~sfv~  614 (618)
T PF01347_consen  601 LWNEPSNQVASFVY  614 (618)
T ss_dssp             HTT-S-HHHHHHHH
T ss_pred             HhhCchHHHHHHHH
Confidence            76553555554443

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=92.46  E-value=2.8  Score=36.47  Aligned_cols=141  Identities=18%  Similarity=0.172  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHHhcC-Chh----hHHHHH------hCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhc
Q 009568          134 LQFEAAWALTNIASG-TSE----NTKVVI------DHGAVPIFVK-LLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQ  201 (532)
Q Consensus       134 ~~~~a~~~L~~l~~~-~~~----~~~~i~------~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~  201 (532)
                      +|..|+.+|..++.. ++.    +...++      ..+.-+.|+. ++.++++.+|..|+.++..+-.+...+-...-+.
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~   81 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES   81 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence            566777777777663 111    111111      1223444454 5677899999999999999876543221111111


Q ss_pred             -------------------CChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCc--ccccchHHHHHHhhcCCCHHH
Q 009568          202 -------------------GALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF--DQVRPALPALAQLVHSNDEEV  260 (532)
Q Consensus       202 -------------------~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~--~~~~~~l~~L~~lL~~~d~~v  260 (532)
                                         ..-..|+..|....+..+...++.++..|...-|....  .....++..+..++.+.|..+
T Consensus        82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v  161 (182)
T PF13251_consen   82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV  161 (182)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence                               12334455554555778888999999999988654433  334556666677788899999


Q ss_pred             HHHHHHHHHHhccC
Q 009568          261 LTDACWALSYLSDG  274 (532)
Q Consensus       261 ~~~a~~~L~~l~~~  274 (532)
                      +..++.+++.+...
T Consensus       162 ~v~~l~~~~~l~s~  175 (182)
T PF13251_consen  162 RVAALSCLGALLSV  175 (182)
T ss_pred             HHHHHHHHHHHHcC
Confidence            99999999887644

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=92.45  E-value=9.5  Score=35.79  Aligned_cols=209  Identities=13%  Similarity=0.110  Sum_probs=140.7

Q ss_pred             HHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcc----hhHHHhh-cCchHHHHHHhcCCCc-hhHHHHHHHHH
Q 009568          280 QAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDF----QTQCIIT-YGALPYLLGLLTHSHK-KSIKKEACWTI  353 (532)
Q Consensus       280 ~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~----~~~~~~~-~~~l~~L~~lL~~~~~-~~v~~~a~~~L  353 (532)
                      +.+.++|++..++..+..-+...+..++.+..|+-...-.    ..+++.. ..++..++.-   -.+ +++--.+...+
T Consensus        73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~---~~~~~~iaL~cg~ml  149 (342)
T KOG1566|consen   73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG---YENTPEIALTCGNML  149 (342)
T ss_pred             HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh---hccchHHHHHHHHHH
Confidence            5577889999999999999999999999999998754321    1222221 1233333333   212 33333333334


Q ss_pred             HHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc--CC-hHHHHhhcCCCCHHH
Q 009568          354 SNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVRE--GC-IKPLCDLFVCPDPRI  430 (532)
Q Consensus       354 ~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~--~~-l~~L~~lL~~~d~~v  430 (532)
                      ..+..+ +.....++...-+.....+++.+..++...|......+......-..+++..+  .. .+..-.++.+.+.-+
T Consensus       150 rEcirh-e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvt  228 (342)
T KOG1566|consen  150 RECIRH-EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVT  228 (342)
T ss_pred             HHHHhh-HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceeh
Confidence            444333 44455566777788889999999999999999998888776543344444432  12 334666888999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCcc
Q 009568          431 VTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDD  502 (532)
Q Consensus       431 ~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~~~~  502 (532)
                      +..++..+..++....+..          .-...+.....+..+..|+..+...++-.|..+...|......
T Consensus       229 krqs~kllg~llldr~N~~----------~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK  290 (342)
T KOG1566|consen  229 KRQSLKLLGELLLDRSNSA----------VMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNK  290 (342)
T ss_pred             HHHHHHhHHHHHhCCCcHH----------HHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCC
Confidence            9999999999987654432          2344555556678889999999999999999988877665443

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=92.38  E-value=3.4  Score=35.94  Aligned_cols=143  Identities=13%  Similarity=0.163  Sum_probs=90.3

Q ss_pred             chhhHHHHHHHhhcCCcch-h----HHHhhc-------CchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009568          302 VLIPALRTVGNIVTGDDFQ-T----QCIITY-------GALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID  369 (532)
Q Consensus       302 v~~~al~~L~nl~~~~~~~-~----~~~~~~-------~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~  369 (532)
                      +|..|+.+|..++...+.. .    ..++-.       .-...+.-++.++ ++.+|..|+.++..+..|........-+
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp-~~kvR~aA~~~l~~lL~gsk~~L~~Ae~   80 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDP-SPKVRAAAASALAALLEGSKPFLAQAEE   80 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCC-chhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence            5777888888887762211 0    111111       2233444555666 9999999999999999876554433221


Q ss_pred             cC-------------------CHHHHHHHHhcC-chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHH
Q 009568          370 AG-------------------LVGPLVNLLQNA-EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPR  429 (532)
Q Consensus       370 ~~-------------------~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~  429 (532)
                      ..                   +-..|+..++.+ +..+....+.++..++.....+..+.=+-..++..+..++.+.|++
T Consensus        81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~  160 (182)
T PF13251_consen   81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN  160 (182)
T ss_pred             cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence            11                   223455555554 6778888899999888875443322200112456666677889999


Q ss_pred             HHHHHHHHHHHHHHhh
Q 009568          430 IVTVCLEGLENILKVG  445 (532)
Q Consensus       430 v~~~al~~L~~l~~~~  445 (532)
                      ++..++.++..++...
T Consensus       161 v~v~~l~~~~~l~s~~  176 (182)
T PF13251_consen  161 VRVAALSCLGALLSVQ  176 (182)
T ss_pred             HHHHHHHHHHHHHcCC
Confidence            9999999999887654

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=92.33  E-value=1.3  Score=37.83  Aligned_cols=38  Identities=24%  Similarity=0.287  Sum_probs=30.2

Q ss_pred             CchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHH
Q 009568          328 GALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQ  365 (532)
Q Consensus       328 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~  365 (532)
                      .+++.|.++|+.+.+..+|.++..+||.|.+-+|...+
T Consensus        10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k   47 (160)
T PF11865_consen   10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHK   47 (160)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHh
Confidence            46778888998876789999999999999885554433

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=92.23  E-value=5.8  Score=36.86  Aligned_cols=215  Identities=20%  Similarity=0.163  Sum_probs=121.1

Q ss_pred             HHhhhcCCChHHHHHHHHHHHHHhcCCC--CCchhH-h-----------hhCCcHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 009568           79 MVAGVWSDDSSLQLEATTQFRKLLSIER--SPPIEE-V-----------IQSGVVPRFVEFLMREDYPQLQFEAAWALTN  144 (532)
Q Consensus        79 lv~~L~s~~~~~~~~a~~~l~~l~~~~~--~~~~~~-~-----------i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~  144 (532)
                      -+.+|.+..+..-..|+..+.+++..-+  .+.... +           .-.|+-+.+++-+.+..   ....++..|..
T Consensus        12 ~vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~---t~e~tl~lL~~   88 (262)
T PF14225_consen   12 AVACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSS---TYELTLRLLSR   88 (262)
T ss_pred             HHHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCC---cHHHHHHHHHH
Confidence            3567777777777778888887776521  111111 1           11244455555555544   34445555555


Q ss_pred             HhcC-------ChhhHHHHHhCCChHHHHHhhCCCC----HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhh
Q 009568          145 IASG-------TSENTKVVIDHGAVPIFVKLLASPS----DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE  213 (532)
Q Consensus       145 l~~~-------~~~~~~~i~~~g~i~~L~~lL~~~~----~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~  213 (532)
                      ++.-       ..+.+-.+.-.+.+|.++..+.+++    ......++..|+.+|....        ...+..++....+
T Consensus        89 L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~~~La~il~~ya~  160 (262)
T PF14225_consen   89 LTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------LPNLARILSSYAK  160 (262)
T ss_pred             HhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------CccHHHHHHHHHh
Confidence            5441       2222323332356788888777765    2344556677888873221        1123334444322


Q ss_pred             h---hhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHH
Q 009568          214 R---AKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR  290 (532)
Q Consensus       214 ~---~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~  290 (532)
                      .   ...+....++..|..-..  |    ......+-.++.+|.++.+.++..++..|..+....+-...  ...+++..
T Consensus       161 ~~fr~~~dfl~~v~~~l~~~f~--P----~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dlisp  232 (262)
T PF14225_consen  161 GRFRDKDDFLSQVVSYLREAFF--P----DHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADLISP  232 (262)
T ss_pred             cCCCCHHHHHHHHHHHHHHHhC--c----hhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHHHHH
Confidence            2   234455555555443221  1    12245677888999999899999999999988755432212  44568888


Q ss_pred             HHHhhCCCCccchhhHHHHHHHhhc
Q 009568          291 LVELLGHPSPSVLIPALRTVGNIVT  315 (532)
Q Consensus       291 L~~lL~~~~~~v~~~al~~L~nl~~  315 (532)
                      +..++..+.   -..|+.+|-++.+
T Consensus       233 llrlL~t~~---~~eAL~VLd~~v~  254 (262)
T PF14225_consen  233 LLRLLQTDL---WMEALEVLDEIVT  254 (262)
T ss_pred             HHHHhCCcc---HHHHHHHHHHHHh
Confidence            888887664   4456666655544

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=92.23  E-value=12  Score=37.24  Aligned_cols=132  Identities=15%  Similarity=0.148  Sum_probs=94.9

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHHhcCC---hhhHHHHHhCCChHHHHHhhCC-------CCHHHHHHHHHHHHHhhCCC
Q 009568          122 FVEFLMREDYPQLQFEAAWALTNIASGT---SENTKVVIDHGAVPIFVKLLAS-------PSDDVREQAVWALGNVAGDS  191 (532)
Q Consensus       122 Lv~lL~~~~~~~~~~~a~~~L~~l~~~~---~~~~~~i~~~g~i~~L~~lL~~-------~~~~v~~~a~~~L~nl~~~~  191 (532)
                      +..++...+ .+-|+.|+...+.++.+.   ...++.+.+.-+.+.+-++|.+       ++...+..++..|..+|.+.
T Consensus        16 ~~~L~~~k~-D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p   94 (698)
T KOG2611|consen   16 CLKLLKGKR-DEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP   94 (698)
T ss_pred             HHHHhcccC-hHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence            556666666 678999999999998743   3456667887778888888865       34566778888888888765


Q ss_pred             chh-HHHHHhcCChHHHHHHhhhhhhhH------HHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCC
Q 009568          192 PRC-RDLVLSQGALIPLLAQLNERAKLS------MLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN  256 (532)
Q Consensus       192 ~~~-~~~~~~~~~l~~L~~ll~~~~~~~------~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~  256 (532)
                      .-. ...++  +.+|.|+..+.+..+++      +...+..+|..++...+........|.++.+.++-.-.
T Consensus        95 ElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~  164 (698)
T KOG2611|consen   95 ELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELP  164 (698)
T ss_pred             hhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCC
Confidence            321 11222  25888888886554444      88889999999998877777777789999998776533

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=92.23  E-value=4.7  Score=40.64  Aligned_cols=275  Identities=12%  Similarity=0.109  Sum_probs=118.5

Q ss_pred             cHHHHHHhhcC---CCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCch
Q 009568          118 VVPRFVEFLMR---EDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPR  193 (532)
Q Consensus       118 ~i~~Lv~lL~~---~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~  193 (532)
                      ++..|..++..   ..|+.+-....+++..+-.+-......++. ..+..+....++ .++..-.....+++.+......
T Consensus        27 ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~-~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~  105 (435)
T PF03378_consen   27 LLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQ-HLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCE  105 (435)
T ss_dssp             HHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHH-HHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-G
T ss_pred             HHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccC
Confidence            34444444443   223445555555555444433344443432 122333333344 4566666666666665432211


Q ss_pred             h-HH--HHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCC-CCCcccccchHHHHHH-hhcCCCHHHHHHHHHHH
Q 009568          194 C-RD--LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP-QPPFDQVRPALPALAQ-LVHSNDEEVLTDACWAL  268 (532)
Q Consensus       194 ~-~~--~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~l~~L~~-lL~~~d~~v~~~a~~~L  268 (532)
                      . ..  .-.+...++.+..+| +..-.+..-.+...|+.|.+..+ .........++|.|+. .+-.....+ -...+.|
T Consensus       106 ~~~~~v~~~E~~L~P~f~~IL-q~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gni-PalvrLL  183 (435)
T PF03378_consen  106 ADPEAVSQFEEALFPPFQEIL-QQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNI-PALVRLL  183 (435)
T ss_dssp             GGHH---HHHHHHHHHHHHHH-HTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTH-HHHHHHH
T ss_pred             CChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCc-CcHHHHH
Confidence            1 11  123444677777777 44445566666666666655543 2222233344444331 111111111 1112222


Q ss_pred             HHhccCChhHHHHHHHhC----chHHHHHhhCCCCccchhhHHHHHHHhhcCCcch-hHHHhhcCchHHHHHHhcCCCch
Q 009568          269 SYLSDGTNDKIQAVIEAG----VCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ-TQCIITYGALPYLLGLLTHSHKK  343 (532)
Q Consensus       269 ~~l~~~~~~~~~~~~~~~----~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~-~~~~~~~~~l~~L~~lL~~~~~~  343 (532)
                      ..+....+..   +...+    ++..+-.++.+..  .-..+...|..+...-+.. .+..+. .++..+..-|+++..+
T Consensus       184 ~a~i~k~~~~---i~~~~~l~~iLgvFQkLi~sk~--~D~~gF~LL~~iv~~~p~~~l~~yl~-~I~~lll~RLq~skT~  257 (435)
T PF03378_consen  184 QAYIKKDPSF---IVANNQLEPILGVFQKLIASKA--NDHYGFDLLESIVENLPPEALEPYLK-QIFTLLLTRLQSSKTE  257 (435)
T ss_dssp             HHHHHHHGGG-------S-CHHHHHHHHHHHT-TT--CHHHHHHHHHHHHHHS-HHHHGGGHH-HHHHHHHHHHHHC--H
T ss_pred             HHHHHhCchh---hcchhhHHHHHHHHHHHHCCCC--cchHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHhhCCcH
Confidence            2222111111   11122    2333334454443  2345777787777655532 111222 3555556666655466


Q ss_pred             hHHHHHHHHHHHHhc-CCHHHHHHHHH---cCCHHHHHHH--H---hc-CchhHHHHHHHHHHHhhcC
Q 009568          344 SIKKEACWTISNITA-GNRDQIQAVID---AGLVGPLVNL--L---QN-AEFDIKKEAAWAISNATSG  401 (532)
Q Consensus       344 ~v~~~a~~~L~nl~~-~~~~~~~~l~~---~~~i~~L~~l--l---~~-~~~~v~~~a~~aL~nl~~~  401 (532)
                      +..+.-+..++.++. .+++..-..++   .|++..++.-  +   .. ..+.-|+-++-+++++...
T Consensus       258 kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~e  325 (435)
T PF03378_consen  258 KFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCE  325 (435)
T ss_dssp             HHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhc
Confidence            677666666776654 34544444443   4554444432  1   11 1334566777777776654

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=92.21  E-value=4.4  Score=42.90  Aligned_cols=136  Identities=18%  Similarity=0.167  Sum_probs=82.6

Q ss_pred             cchHHHHHHhhcCC----CHHHHHHHHHHHHHhcc----CChhHHHHHHHhCchHHHHHhhC----CCCccchhhHHHHH
Q 009568          243 RPALPALAQLVHSN----DEEVLTDACWALSYLSD----GTNDKIQAVIEAGVCPRLVELLG----HPSPSVLIPALRTV  310 (532)
Q Consensus       243 ~~~l~~L~~lL~~~----d~~v~~~a~~~L~~l~~----~~~~~~~~~~~~~~l~~L~~lL~----~~~~~v~~~al~~L  310 (532)
                      ...+..+..++.++    .+.+...++.+++.+..    ..+.. ...+-..+++.+...|.    ..+...+..++++|
T Consensus       392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaL  470 (574)
T smart00638      392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSC-PDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKAL  470 (574)
T ss_pred             HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCC-ChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhh
Confidence            34566666777643    45567777777776653    11110 01112245566665553    34555677889999


Q ss_pred             HHhhcCCcchhHHHhhcCchHHHHHHhc--CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--chh
Q 009568          311 GNIVTGDDFQTQCIITYGALPYLLGLLT--HSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA--EFD  386 (532)
Q Consensus       311 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~  386 (532)
                      ||+....           .++.+...+.  ...+..+|..|+|+|.+++...+..+        -+.|+.++.+.  +++
T Consensus       471 GN~g~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v--------~~~l~~i~~n~~e~~E  531 (574)
T smart00638      471 GNAGHPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV--------QEVLLPIYLNRAEPPE  531 (574)
T ss_pred             hccCChh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH--------HHHHHHHHcCCCCChH
Confidence            9987532           2334444443  12256899999999999986555533        34556666553  788


Q ss_pred             HHHHHHHHHHHh
Q 009568          387 IKKEAAWAISNA  398 (532)
Q Consensus       387 v~~~a~~aL~nl  398 (532)
                      +|..|+.+|...
T Consensus       532 vRiaA~~~lm~t  543 (574)
T smart00638      532 VRMAAVLVLMET  543 (574)
T ss_pred             HHHHHHHHHHhc
Confidence            999888887655

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=91.74  E-value=1.1  Score=34.09  Aligned_cols=84  Identities=14%  Similarity=0.178  Sum_probs=63.9

Q ss_pred             hHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 009568          288 CPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAV  367 (532)
Q Consensus       288 l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l  367 (532)
                      +...+..+.++.+.+|..++..|..+.....  ....-..+++..+...|+++ ++.|--.|..+|+.++...++.    
T Consensus         5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~~~p~~----   77 (92)
T PF10363_consen    5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE-DSYVYLNAIKGLAALADRHPDE----   77 (92)
T ss_pred             HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHChHH----
Confidence            4566777888999999999999999998766  11222347788889999999 9999999999999999755542    


Q ss_pred             HHcCCHHHHHHHHhc
Q 009568          368 IDAGLVGPLVNLLQN  382 (532)
Q Consensus       368 ~~~~~i~~L~~ll~~  382 (532)
                          +++.|++...+
T Consensus        78 ----vl~~L~~~y~~   88 (92)
T PF10363_consen   78 ----VLPILLDEYAD   88 (92)
T ss_pred             ----HHHHHHHHHhC
Confidence                45556555443

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=91.58  E-value=1.7  Score=37.31  Aligned_cols=112  Identities=18%  Similarity=0.200  Sum_probs=78.8

Q ss_pred             CchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhc--CchHHHHHHhcCCCchhHHHHHHHHHHHHhc---CC
Q 009568          286 GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITY--GALPYLLGLLTHSHKKSIKKEACWTISNITA---GN  360 (532)
Q Consensus       286 ~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~--~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~  360 (532)
                      ..+..+..+|.++++.-+..++..+.-++..++.  +.+.++  ..+..++.+|+.+..+.+++.++.++..+..   +.
T Consensus        25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~  102 (165)
T PF08167_consen   25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK  102 (165)
T ss_pred             HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            5667788899999999999999999998876532  233332  4678889999887567889999999998875   55


Q ss_pred             HHHHHHHHHc---CCHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009568          361 RDQIQAVIDA---GLVGPLVNLLQNAEFDIKKEAAWAISNATSG  401 (532)
Q Consensus       361 ~~~~~~l~~~---~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~  401 (532)
                      ++..+.+...   ++++.++.+++.  ......++.+|..+...
T Consensus       103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~  144 (165)
T PF08167_consen  103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH  144 (165)
T ss_pred             CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence            6655555433   235555555553  46667777777777653

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=91.02  E-value=1.2  Score=39.31  Aligned_cols=99  Identities=10%  Similarity=0.109  Sum_probs=72.5

Q ss_pred             chhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcC----CCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHH
Q 009568          302 VLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH----SHKKSIKKEACWTISNITA-GNRDQIQAVIDAGLVGPL  376 (532)
Q Consensus       302 v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~----~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L  376 (532)
                      -...|+..|..+++.++ ....++++.+--.+...|..    +..+.+|-.+..+++.+.. +++..+..+....++|.+
T Consensus       116 RvcnaL~lLQclaShPe-tk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLc  194 (315)
T COG5209         116 RVCNALNLLQCLASHPE-TKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLC  194 (315)
T ss_pred             HHHHHHHHHHHHhcCcc-hheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHH
Confidence            34556777777776544 55566776655455555532    2245788899999999988 677778888888999999


Q ss_pred             HHHHhcCchhHHHHHHHHHHHhhcC
Q 009568          377 VNLLQNAEFDIKKEAAWAISNATSG  401 (532)
Q Consensus       377 ~~ll~~~~~~v~~~a~~aL~nl~~~  401 (532)
                      +++++.++.--+.-|+..+..+...
T Consensus       195 LrIme~gSElSktvaifI~qkil~d  219 (315)
T COG5209         195 LRIMELGSELSKTVAIFIFQKILGD  219 (315)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            9999999877777888888777653

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=90.53  E-value=10  Score=38.44  Aligned_cols=165  Identities=12%  Similarity=0.067  Sum_probs=110.3

Q ss_pred             hHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCc----cchhhHHHHHHHhhcCCcch
Q 009568          245 ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP----SVLIPALRTVGNIVTGDDFQ  320 (532)
Q Consensus       245 ~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~----~v~~~al~~L~nl~~~~~~~  320 (532)
                      ....+...+.+++...+..++..+..++.. ......++....+..|..++.++..    .+...+++++..+....- .
T Consensus        84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-v  161 (713)
T KOG2999|consen   84 YAKRIMEILTEGNNISKMEALKELDSLSLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-V  161 (713)
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHhhcccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-e
Confidence            344567777777777777788888887754 4456778888899999999977643    455556666665554322 1


Q ss_pred             hHHHhhcCchHHHHHHhcC-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhh
Q 009568          321 TQCIITYGALPYLLGLLTH-SHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNAT  399 (532)
Q Consensus       321 ~~~~~~~~~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~  399 (532)
                      .-..+...++.....+.+- ..+..+-..|...|-++..+++...+.+.+.--+..|+..++..+..++..|...+..+.
T Consensus       162 sW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~  241 (713)
T KOG2999|consen  162 SWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF  241 (713)
T ss_pred             eeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            1111222233333333321 114567778888888888887766666777777999999999999999988888887787


Q ss_pred             cCCCHHHHHHHH
Q 009568          400 SGGTHEQIKYLV  411 (532)
Q Consensus       400 ~~~~~~~~~~l~  411 (532)
                      ..+.++.+..+.
T Consensus       242 ~~a~~~~R~~~~  253 (713)
T KOG2999|consen  242 RKAPDDKRFEMA  253 (713)
T ss_pred             hhCChHHHHHHH
Confidence            776655544444

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=90.53  E-value=14  Score=39.14  Aligned_cols=236  Identities=17%  Similarity=0.152  Sum_probs=122.6

Q ss_pred             cHHHHHhhhcCCChHHHHHHHHHHHHHhc-CCCCCchhHhhhCC---cHHHHHHhhcCCCCHH-HHHHHHHHHHHHh-cC
Q 009568           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLS-IERSPPIEEVIQSG---VVPRFVEFLMREDYPQ-LQFEAAWALTNIA-SG  148 (532)
Q Consensus        75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~-~~~~~~~~~~i~~g---~i~~Lv~lL~~~~~~~-~~~~a~~~L~~l~-~~  148 (532)
                      .+-.|++.|+.-+.+........+.. .. .......+.+...|   .+..+.+++....-+. ....++..+.... ..
T Consensus       312 ~f~~lv~~lR~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~P  390 (574)
T smart00638      312 KFLRLVRLLRTLSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPLEAAQLLAVLPHTARYP  390 (574)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcC
Confidence            45566666665554443333333322 10 00011233344333   4556666666654221 1222222222222 22


Q ss_pred             ChhhHHHHHhCCChHHHHHhhCC----CCHHHHHHHHHHHHHhhC----CCchhHHHHHhcCChHHHHHHhhh---hhhh
Q 009568          149 TSENTKVVIDHGAVPIFVKLLAS----PSDDVREQAVWALGNVAG----DSPRCRDLVLSQGALIPLLAQLNE---RAKL  217 (532)
Q Consensus       149 ~~~~~~~i~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~nl~~----~~~~~~~~~~~~~~l~~L~~ll~~---~~~~  217 (532)
                      +++         .+..+..++.+    ....++..|+.++++++.    +.+.+... .....++.+...|..   ..+.
T Consensus       391 t~~---------~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~  460 (574)
T smart00638      391 TEE---------ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDF-VLEELLKYLHELLQQAVSKGDE  460 (574)
T ss_pred             CHH---------HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChh-hHHHHHHHHHHHHHHHHhcCCc
Confidence            222         34566666654    456788888888887753    22211111 112345666665532   2344


Q ss_pred             HHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhc-C--CCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHh
Q 009568          218 SMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH-S--NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL  294 (532)
Q Consensus       218 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~-~--~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l  294 (532)
                      .-+..++.+|+|+...          ..++.+.+.+. .  ....++..|+|+|..++...+..        +-+.++.+
T Consensus       461 ~~~~~~LkaLGN~g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i  522 (574)
T smart00638      461 EEIQLYLKALGNAGHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPI  522 (574)
T ss_pred             hheeeHHHhhhccCCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHH
Confidence            4566677888887754          45566666665 2  25679999999999887655543        23455566


Q ss_pred             hCC--CCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHH
Q 009568          295 LGH--PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA  349 (532)
Q Consensus       295 L~~--~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a  349 (532)
                      +.+  .+.++|..|+..|...   .+..       ..+..+...+....+..|+...
T Consensus       523 ~~n~~e~~EvRiaA~~~lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sfv  569 (574)
T smart00638      523 YLNRAEPPEVRMAAVLVLMET---KPSV-------ALLQRIAELLNKEPNLQVASFV  569 (574)
T ss_pred             HcCCCCChHHHHHHHHHHHhc---CCCH-------HHHHHHHHHHhhcCcHHHHHHh
Confidence            544  4567888777666432   2211       2355666666655355555433

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=90.47  E-value=19  Score=35.48  Aligned_cols=147  Identities=14%  Similarity=0.079  Sum_probs=89.0

Q ss_pred             HHHhCchHHHHHhhCC-CCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhc----C-CCchhHHHHHHHHHHH
Q 009568          282 VIEAGVCPRLVELLGH-PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLT----H-SHKKSIKKEACWTISN  355 (532)
Q Consensus       282 ~~~~~~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~----~-~~~~~v~~~a~~~L~n  355 (532)
                      +.+.+-.+.+-.-+.. +...-+..|+..+..++.........++    ...+..+|.    + ..++.-+..|+..++.
T Consensus       206 lfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~a  281 (370)
T PF08506_consen  206 LFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIGA  281 (370)
T ss_dssp             HHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHH
T ss_pred             HHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHHH
Confidence            4444555555555543 3356678888999888865443322222    233444443    1 2266778889999999


Q ss_pred             HhcCCHH------------HHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhc
Q 009568          356 ITAGNRD------------QIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLF  423 (532)
Q Consensus       356 l~~~~~~------------~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL  423 (532)
                      ++.....            .+..++...++|.|. --.+..+-++..|++.+..+-..-+++....     +++.++..|
T Consensus       282 la~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~~-----~~~~l~~~L  355 (370)
T PF08506_consen  282 LASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLLQ-----IFPLLVNHL  355 (370)
T ss_dssp             HHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHHH-----HHHHHHHHT
T ss_pred             HHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHHH-----HHHHHHHHh
Confidence            9873211            244555556777765 2223467799999999998887666554443     799999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 009568          424 VCPDPRIVTVCLEGL  438 (532)
Q Consensus       424 ~~~d~~v~~~al~~L  438 (532)
                      .+++.-|...|..++
T Consensus       356 ~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  356 QSSSYVVHTYAAIAI  370 (370)
T ss_dssp             TSS-HHHHHHHHHHH
T ss_pred             CCCCcchhhhhhhhC
Confidence            999988877776553

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=90.43  E-value=6.2  Score=34.98  Aligned_cols=101  Identities=15%  Similarity=0.275  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHhcCCCCCchhH-hhhCCcHHH-HHHhhcCC----CCHHHHHHHHHHHHHHhc-CChhhHHHHHhCCCh
Q 009568           90 LQLEATTQFRKLLSIERSPPIEE-VIQSGVVPR-FVEFLMRE----DYPQLQFEAAWALTNIAS-GTSENTKVVIDHGAV  162 (532)
Q Consensus        90 ~~~~a~~~l~~l~~~~~~~~~~~-~i~~g~i~~-Lv~lL~~~----~~~~~~~~a~~~L~~l~~-~~~~~~~~i~~~g~i  162 (532)
                      -...|+..|..+++.   |.++. ++++. +|. +-.+|...    ...-+|..++.+++.+.. +++.....+....++
T Consensus       116 RvcnaL~lLQclaSh---Petk~~Fl~Ah-iplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeiv  191 (315)
T COG5209         116 RVCNALNLLQCLASH---PETKKVFLDAH-IPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIV  191 (315)
T ss_pred             HHHHHHHHHHHHhcC---cchheeeeecc-cceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHH
Confidence            344677777777774   44444 33443 332 23344322    125688999999999987 456667777788999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh
Q 009568          163 PIFVKLLASPSDDVREQAVWALGNVAGDSPRC  194 (532)
Q Consensus       163 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~  194 (532)
                      |.+++++...++--+..++.++..+.+++...
T Consensus       192 PLcLrIme~gSElSktvaifI~qkil~dDvGL  223 (315)
T COG5209         192 PLCLRIMELGSELSKTVAIFIFQKILGDDVGL  223 (315)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHhccchhH
Confidence            99999999988888889999999988776543

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=90.19  E-value=1.3  Score=39.00  Aligned_cols=82  Identities=10%  Similarity=0.186  Sum_probs=62.2

Q ss_pred             ChhhHHHHHhCCChHHHHHhhCC---------CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHH
Q 009568          149 TSENTKVVIDHGAVPIFVKLLAS---------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSM  219 (532)
Q Consensus       149 ~~~~~~~i~~~g~i~~L~~lL~~---------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~  219 (532)
                      .......+++.|++..|+.+|..         .+..+...++.||..|..........+-..+++..|+..+ .+.+..+
T Consensus        96 ~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L-~s~~~~~  174 (187)
T PF06371_consen   96 PISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSL-DSPNIKT  174 (187)
T ss_dssp             -HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT---TTSHHH
T ss_pred             CchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHH-CCCCHHH
Confidence            45667788888999999998853         3457888899999998776665555555577888888888 7888999


Q ss_pred             HHHHHHHhhhcc
Q 009568          220 LRNATWTLSNFC  231 (532)
Q Consensus       220 ~~~a~~~L~~L~  231 (532)
                      +..++..|..+|
T Consensus       175 r~~~leiL~~lc  186 (187)
T PF06371_consen  175 RKLALEILAALC  186 (187)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998876

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]

Probab=90.07  E-value=18  Score=37.71  Aligned_cols=255  Identities=13%  Similarity=0.194  Sum_probs=131.2

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCCchhHH
Q 009568          119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASP--SDDVREQAVWALGNVAGDSPRCRD  196 (532)
Q Consensus       119 i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~nl~~~~~~~~~  196 (532)
                      +-.|...+.+++ ..++..|+..|+-.-.++.  ++.+.     ..|..++.+.  ..++...|...|+.+...+.. .+
T Consensus       454 lALLsdyv~~~~-s~~ri~aIlGLglayaGsq--~e~V~-----~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn-~d  524 (878)
T KOG2005|consen  454 LALLSDYLQSSS-SIHRIGAILGLGLAYAGSQ--REEVL-----ELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCN-ED  524 (878)
T ss_pred             HHHHHHhccCCC-ceeehHHhhhhHHhhcCCc--hHHHH-----HHHhHHhcCCCCchhHHHHHHhhcceeEEecCC-hH
Confidence            445566677777 6788888777776555332  22332     1445555553  356777777778877644321 11


Q ss_pred             HHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh
Q 009568          197 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN  276 (532)
Q Consensus       197 ~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~  276 (532)
                      .  ...++..++..-.........+.....|.-+.-+..        ..+...+..+..-...+...+-..+..++....
T Consensus       525 v--ts~ilqtlmekse~El~d~~~RFL~LGL~llflgkq--------e~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGT  594 (878)
T KOG2005|consen  525 V--TSSILQTLMEKSETELEDQWFRFLALGLALLFLGKQ--------ESVDAVVETIKAIEGPIRKHESILVKSCAYAGT  594 (878)
T ss_pred             H--HHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHhccc--------chHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Confidence            1  112333333322111122233333333333333221        122222222222222232222222222111111


Q ss_pred             hHHHHHHHhCchHHHHHhhCCCC---ccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHH
Q 009568          277 DKIQAVIEAGVCPRLVELLGHPS---PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI  353 (532)
Q Consensus       277 ~~~~~~~~~~~l~~L~~lL~~~~---~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L  353 (532)
                      ...-.+-+    ..+..+-....   ..-...|+.-++-++.+.+-..+.     .+..+-.+|... ++.+|+..=-++
T Consensus       595 Gnvl~Iq~----q~ll~~cgE~~~~~e~~~~~avLgiAliAMgeeig~eM-----~lR~f~h~l~yg-e~~iRravPLal  664 (878)
T KOG2005|consen  595 GNVLKIQS----QLLLSFCGEHDADLESEQELAVLGIALIAMGEEIGSEM-----VLRHFGHLLHYG-EPHIRRAVPLAL  664 (878)
T ss_pred             CceEEech----hhhhhhcCCCccchhhhccchhhhhhhhhhhhhhhhHH-----HHHHHHHHHHcC-CHHHHHHHHHHH
Confidence            00000000    12222222221   122335666666666666544332     355677888888 999999999999


Q ss_pred             HHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHH
Q 009568          354 SNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKY  409 (532)
Q Consensus       354 ~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~  409 (532)
                      +-++..+|..       +++..|-++.+..+.++..++..+++-+-.+.+...+..
T Consensus       665 ~llsvSNPq~-------~vlDtLsk~shd~D~eva~naIfamGLiGAGTnNARla~  713 (878)
T KOG2005|consen  665 GLLSVSNPQV-------NVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNNARLAQ  713 (878)
T ss_pred             hhhccCCCcc-------hHHHHHHHhccCcchHHHHHHHHHhccccCCcchHHHHH
Confidence            9999887753       377888888899999999999999988776655444333

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=89.93  E-value=3.8  Score=43.65  Aligned_cols=311  Identities=16%  Similarity=0.117  Sum_probs=152.0

Q ss_pred             CChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh------C
Q 009568           86 DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID------H  159 (532)
Q Consensus        86 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~------~  159 (532)
                      +|..+...+++.+..++..  ......+++.|+|..|+..   +...+.-.....||+.|.. .....+.++.      .
T Consensus       365 ~d~~l~~~~~k~~~~l~~h--~kfa~~fv~~~gi~kll~v---pr~s~~~~g~s~cly~~~~-~q~~mervc~~p~~v~~  438 (1516)
T KOG1832|consen  365 DDSPLLPDVMKLICALAAH--RKFAAMFVERRGILKLLAV---PRVSETFYGLSSCLYTIGS-LQGIMERVCALPLVVIH  438 (1516)
T ss_pred             ccccccHHHHHHHHHHHHh--hHHHHHHHHhhhhHHHhcC---CCchhhhhhHHHHHHHHhh-hhhHHHHHhhccHHHHH
Confidence            3444556777777777764  4566677888887666554   3313444445567777766 3333333322      2


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhh------------------hhhHHHH
Q 009568          160 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNER------------------AKLSMLR  221 (532)
Q Consensus       160 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~------------------~~~~~~~  221 (532)
                      .++..-+.+|......-+.++...+...... ...-+.+-..+.+..|+.++..-                  .+.....
T Consensus       439 ~vv~~~~~l~~cs~~~~~~~~~~ff~~~f~f-rail~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~  517 (1516)
T KOG1832|consen  439 QVVKLAIELLDCSQDQARKNSALFFAAAFVF-RAILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAF  517 (1516)
T ss_pred             HHHHHHHHHHhcchhhccchHHHHHHHHHHH-HHHHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhh
Confidence            3344445555543333333332222211110 01123344455677777776310                  1122333


Q ss_pred             HHHHHhhhccCCC-----CC-CCcccccchHHHHHHhhcCC------CHHHHHHHHHHHHHhccCCh-------hHHHHH
Q 009568          222 NATWTLSNFCRGK-----PQ-PPFDQVRPALPALAQLVHSN------DEEVLTDACWALSYLSDGTN-------DKIQAV  282 (532)
Q Consensus       222 ~a~~~L~~L~~~~-----~~-~~~~~~~~~l~~L~~lL~~~------d~~v~~~a~~~L~~l~~~~~-------~~~~~~  282 (532)
                      ..|.+|....+..     .. .......+..+..++-+...      ..+..+.++|-+-.+....+       .-...+
T Consensus       518 htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenf  597 (1516)
T KOG1832|consen  518 HTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENF  597 (1516)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHH
Confidence            4444444322211     00 00111112222222222211      12234455555544433222       122346


Q ss_pred             HHhCchHHHHHhhCC-CCcc-------chhhHHHHHHHhhcCCcchhHHHhhc--------CchHHHHHHhcC---CCch
Q 009568          283 IEAGVCPRLVELLGH-PSPS-------VLIPALRTVGNIVTGDDFQTQCIITY--------GALPYLLGLLTH---SHKK  343 (532)
Q Consensus       283 ~~~~~l~~L~~lL~~-~~~~-------v~~~al~~L~nl~~~~~~~~~~~~~~--------~~l~~L~~lL~~---~~~~  343 (532)
                      ++.+.+..++.+... .+|.       ....|+.+|..+..-++.+ ..+...        .++..++..-.-   -.++
T Consensus       598 lkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq-~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dp  676 (1516)
T KOG1832|consen  598 LKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQ-KALAHATLSNNRAYDGIAIILDAANGSNSIVDP  676 (1516)
T ss_pred             HHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHH-HHHHHHHhhcccccCceEEEeecccccccccCH
Confidence            666777777777643 2332       3445565555554433322 233221        133333333221   1278


Q ss_pred             hHHHHHHHHHHHHhcCCHHHH-------------------------------H----HHHHcCCHHHHHHHHhcCc----
Q 009568          344 SIKKEACWTISNITAGNRDQI-------------------------------Q----AVIDAGLVGPLVNLLQNAE----  384 (532)
Q Consensus       344 ~v~~~a~~~L~nl~~~~~~~~-------------------------------~----~l~~~~~i~~L~~ll~~~~----  384 (532)
                      ++++.|+.+|.|+..+.|+..                               .    .+...+.|..|+.+++...    
T Consensus       677 ei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~  756 (1516)
T KOG1832|consen  677 EIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTT  756 (1516)
T ss_pred             HHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCc
Confidence            999999999999876542211                               1    1223567899999998753    


Q ss_pred             -hhHHHHHHHHHHHhhcCCCH
Q 009568          385 -FDIKKEAAWAISNATSGGTH  404 (532)
Q Consensus       385 -~~v~~~a~~aL~nl~~~~~~  404 (532)
                       ..+|.-||.+|.-++...+.
T Consensus       757 aD~IRalAc~~L~GLaR~~tV  777 (1516)
T KOG1832|consen  757 ADCIRALACRVLLGLARDDTV  777 (1516)
T ss_pred             HHHHHHHHHHHHhccccCcHH
Confidence             36899999999999986543

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=89.81  E-value=17  Score=33.84  Aligned_cols=179  Identities=18%  Similarity=0.163  Sum_probs=98.9

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-------chhHHHHHhcCChHHHHHHhhhhh---hhHHHHHHHHHhhhcc
Q 009568          162 VPIFVKLLASPSDDVREQAVWALGNVAGDS-------PRCRDLVLSQGALIPLLAQLNERA---KLSMLRNATWTLSNFC  231 (532)
Q Consensus       162 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-------~~~~~~~~~~~~l~~L~~ll~~~~---~~~~~~~a~~~L~~L~  231 (532)
                      -+.+++-+.+  ....+.++..|..++...       ...|-.+.-.+.+|.++..+.+..   .......++..|+.+|
T Consensus        66 q~Ll~KGL~S--s~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a  143 (262)
T PF14225_consen   66 QPLLLKGLRS--SSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVA  143 (262)
T ss_pred             HHHHhCccCC--CCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHH
Confidence            3444444544  334556667777765321       112322222334555555553222   1245566778888888


Q ss_pred             CCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHH
Q 009568          232 RGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVG  311 (532)
Q Consensus       232 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~  311 (532)
                      ......   ....++....+--..+..+....++..|+.-..  ++     .+..++..++.+|.++-+.++..++.+|.
T Consensus       144 ~~~~~~---~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~--P~-----~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~  213 (262)
T PF14225_consen  144 EAQGLP---NLARILSSYAKGRFRDKDDFLSQVVSYLREAFF--PD-----HEFQILTFLLGLLENGPPWLRRKTLQILK  213 (262)
T ss_pred             HhCCCc---cHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC--ch-----hHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            653221   111222222211112334445555555543221  11     12356778889998888899999999999


Q ss_pred             HhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 009568          312 NIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (532)
Q Consensus       312 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  358 (532)
                      .+....+-...  ...+++..+.+++.++    ...+|..+|-++..
T Consensus       214 ~ll~~~d~~~~--~~~dlispllrlL~t~----~~~eAL~VLd~~v~  254 (262)
T PF14225_consen  214 VLLPHVDMRSP--HGADLISPLLRLLQTD----LWMEALEVLDEIVT  254 (262)
T ss_pred             HHhccccCCCC--cchHHHHHHHHHhCCc----cHHHHHHHHHHHHh
Confidence            99877664332  5557888999999776    45667777766543

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=89.62  E-value=4  Score=35.06  Aligned_cols=116  Identities=10%  Similarity=0.087  Sum_probs=77.6

Q ss_pred             CchHHHHHHhcCCCchhHHHHHHHHHHHHhcCC-HHHHHHHHHcCCHHHHHHHHhcC-chhHHHHHHHHHHHhhcC--CC
Q 009568          328 GALPYLLGLLTHSHKKSIKKEACWTISNITAGN-RDQIQAVIDAGLVGPLVNLLQNA-EFDIKKEAAWAISNATSG--GT  403 (532)
Q Consensus       328 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~--~~  403 (532)
                      .....+..+|+++ ++.-|..++..+.-++..+ .+....-. ...+..++..++.. .+.+...++.++..+...  +.
T Consensus        25 ~l~~ri~~LL~s~-~~~~rw~G~~Ll~~~~~~~~~e~l~~~~-~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~  102 (165)
T PF08167_consen   25 KLVTRINSLLQSK-SAYSRWAGLCLLKVTVEQCSWEILLSHG-SQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK  102 (165)
T ss_pred             HHHHHHHHHhCCC-ChhhHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            4567788999988 8888888888888877654 33221111 23578888888876 457888899999888752  23


Q ss_pred             HHHHHHHHHc---CChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 009568          404 HEQIKYLVRE---GCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEA  447 (532)
Q Consensus       404 ~~~~~~l~~~---~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~  447 (532)
                      ++..+.+.-.   +++..++.+++.  ......++++|..++.....
T Consensus       103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt  147 (165)
T PF08167_consen  103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT  147 (165)
T ss_pred             CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence            3433333322   345555555554  66777899999999987654

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=89.17  E-value=1.6  Score=39.17  Aligned_cols=81  Identities=22%  Similarity=0.271  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHhcCChhhHHHHHhCCCh-------HHHHHhhCC-CCHHHHHHHHHHHHHhhCCCc-hhHHHHHhcCC
Q 009568          133 QLQFEAAWALTNIASGTSENTKVVIDHGAV-------PIFVKLLAS-PSDDVREQAVWALGNVAGDSP-RCRDLVLSQGA  203 (532)
Q Consensus       133 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i-------~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~~~  203 (532)
                      .-|..|+.+|++++- .+.+.+.++..+-.       ..|..+|.. ++...|+.|+-.|.++|..+. .+|....+.+.
T Consensus       139 SPqrlaLEaLcKLsV-~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~  217 (257)
T PF12031_consen  139 SPQRLALEALCKLSV-IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC  217 (257)
T ss_pred             CHHHHHHHHHHHhhe-eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence            468899999999998 55566666665543       444445544 788999999999999996554 45566778899


Q ss_pred             hHHHHHHhhhh
Q 009568          204 LIPLLAQLNER  214 (532)
Q Consensus       204 l~~L~~ll~~~  214 (532)
                      +..|+.++.+.
T Consensus       218 i~~Li~FiE~a  228 (257)
T PF12031_consen  218 ISHLIAFIEDA  228 (257)
T ss_pred             HHHHHHHHHHH
Confidence            99999999543

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=88.89  E-value=4.1  Score=31.28  Aligned_cols=70  Identities=19%  Similarity=0.220  Sum_probs=57.5

Q ss_pred             HcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHH
Q 009568          412 REGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVK  491 (532)
Q Consensus       412 ~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~  491 (532)
                      ...++..|+..+..+.+.....++..+..+++...              ....+.+.|+.+-+.++..+-+++.+.....
T Consensus        28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~--------------a~~~l~~iG~~~fL~klr~~~~~~~~~~id~   93 (98)
T PF14726_consen   28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPY--------------AAQILRDIGAVRFLSKLRPNVEPNLQAEIDE   93 (98)
T ss_pred             HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcH--------------HHHHHHHccHHHHHHHHHhcCCHHHHHHHHH
Confidence            44578888888888888888889999999876432              2567888999999999999999999998888


Q ss_pred             HHHH
Q 009568          492 ILET  495 (532)
Q Consensus       492 il~~  495 (532)
                      +++.
T Consensus        94 il~~   97 (98)
T PF14726_consen   94 ILDQ   97 (98)
T ss_pred             HHhc
Confidence            8864

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=88.62  E-value=36  Score=37.20  Aligned_cols=130  Identities=15%  Similarity=0.129  Sum_probs=91.6

Q ss_pred             CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHh
Q 009568          173 SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQL  252 (532)
Q Consensus       173 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~l  252 (532)
                      .+.++.++.-+|+++|--....     ....+|.|++-|..++...++.+.+-++.-+|...    .......+|.+...
T Consensus       944 ~~~vra~~vvTlakmcLah~~L-----aKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y----Tam~d~YiP~I~~~ 1014 (1529)
T KOG0413|consen  944 SDKVRAVGVVTLAKMCLAHDRL-----AKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY----TAMTDRYIPMIAAS 1014 (1529)
T ss_pred             chHHHHHHHHHHHHHHhhhhHH-----HHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH----HHHHHHhhHHHHHH
Confidence            3578889999999998543322     22358889999988888889998888888888652    23456788999999


Q ss_pred             hcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhc
Q 009568          253 VHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT  315 (532)
Q Consensus       253 L~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~  315 (532)
                      |.++++-|+..++-.|.+|....--.    ....++-+++.-|-+.++.++.-|=.+++.+..
T Consensus      1015 L~Dp~~iVRrqt~ilL~rLLq~~~vK----w~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~ 1073 (1529)
T KOG0413|consen 1015 LCDPSVIVRRQTIILLARLLQFGIVK----WNGELFIRFMLALLDANEDIRNDAKFYISEVLQ 1073 (1529)
T ss_pred             hcCchHHHHHHHHHHHHHHHhhhhhh----cchhhHHHHHHHHcccCHHHHHHHHHHHHHHHh
Confidence            99999999999999999987432211    111233334444455666777777777776653

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=88.57  E-value=5.7  Score=32.86  Aligned_cols=74  Identities=12%  Similarity=-0.027  Sum_probs=59.4

Q ss_pred             CHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCC------CCHHHHHHHHHHHHHHHHhh
Q 009568          372 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC------PDPRIVTVCLEGLENILKVG  445 (532)
Q Consensus       372 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~------~d~~v~~~al~~L~~l~~~~  445 (532)
                      .+..+..-+.++++.++..|+..|-.+..++...+-..+...+.+..|+.++..      .++.|+..++..+...-...
T Consensus        39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f  118 (139)
T cd03567          39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLEL  118 (139)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            355677778889999999999999999998887777777788888889998853      56789998888877765433

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=88.53  E-value=5.4  Score=33.25  Aligned_cols=73  Identities=8%  Similarity=0.047  Sum_probs=61.1

Q ss_pred             CHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCC-CCHHHHHHHHHHHHHHHHh
Q 009568          372 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC-PDPRIVTVCLEGLENILKV  444 (532)
Q Consensus       372 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~-~d~~v~~~al~~L~~l~~~  444 (532)
                      .+..|..-+.++++.++..|+..|-.++.++....-..+...+.+..|..++.. .++.|+..++..+......
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~  111 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE  111 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence            355667778888999999999999999998888887788888899999999987 7888998888887776543

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=88.38  E-value=33  Score=36.75  Aligned_cols=195  Identities=15%  Similarity=0.112  Sum_probs=99.4

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHHHhhh---hhhhHHHHHHHHHhhhccCCC-C
Q 009568          161 AVPIFVKLLASPSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNE---RAKLSMLRNATWTLSNFCRGK-P  235 (532)
Q Consensus       161 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~~~l~~L~~ll~~---~~~~~~~~~a~~~L~~L~~~~-~  235 (532)
                      ++..+.+++.+....-.+ +.+.|..+.... ....+      .+..+..++..   ..++.+...++.+++.+.... .
T Consensus       396 av~~i~~~I~~~~~~~~e-a~~~l~~l~~~~~~Pt~e------~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~  468 (618)
T PF01347_consen  396 AVKFIKDLIKSKKLTDDE-AAQLLASLPFHVRRPTEE------LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV  468 (618)
T ss_dssp             HHHHHHHHHHTT-S-HHH-HHHHHHHHHHT-----HH------HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCCCHHH-HHHHHHHHHhhcCCCCHH------HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence            455666666653322222 334444443222 11112      24445555532   224456666666666554332 1


Q ss_pred             ---------CCCcccccchHHHHHHhhc----CCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCC---C
Q 009568          236 ---------QPPFDQVRPALPALAQLVH----SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP---S  299 (532)
Q Consensus       236 ---------~~~~~~~~~~l~~L~~lL~----~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~---~  299 (532)
                               .........+++.+...+.    ..|.+-+..++.+|+|+...           ..++.+..++...   .
T Consensus       469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~-----------~~i~~l~~~i~~~~~~~  537 (618)
T PF01347_consen  469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP-----------ESIPVLLPYIEGKEEVP  537 (618)
T ss_dssp             T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G-----------GGHHHHHTTSTTSS-S-
T ss_pred             cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc-----------hhhHHHHhHhhhccccc
Confidence                     1122333455555555554    55778888899999998531           4677788887665   5


Q ss_pred             ccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHH
Q 009568          300 PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS-HKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVN  378 (532)
Q Consensus       300 ~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~  378 (532)
                      ..+|..|+++|..++...+..        +.+.++.++.+. .+.++|-.|..+|...   +|..-       .+..+..
T Consensus       538 ~~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~e~~EvRiaA~~~lm~~---~P~~~-------~l~~i~~  599 (618)
T PF01347_consen  538 HFIRVAAIQALRRLAKHCPEK--------VREILLPIFMNTTEDPEVRIAAYLILMRC---NPSPS-------VLQRIAQ  599 (618)
T ss_dssp             HHHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TTS-HHHHHHHHHHHHHT------HH-------HHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCCCChhHHHHHHHHHHhc---CCCHH-------HHHHHHH
Confidence            678899999999887654422        345677777543 2567888887666553   23211       3445555


Q ss_pred             HHhcC-chhHHHHH
Q 009568          379 LLQNA-EFDIKKEA  391 (532)
Q Consensus       379 ll~~~-~~~v~~~a  391 (532)
                      .+... +..|....
T Consensus       600 ~l~~E~~~QV~sfv  613 (618)
T PF01347_consen  600 SLWNEPSNQVASFV  613 (618)
T ss_dssp             HHTT-S-HHHHHHH
T ss_pred             HHhhCchHHHHHHH
Confidence            66543 45554433

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species

Probab=88.06  E-value=15  Score=33.84  Aligned_cols=132  Identities=15%  Similarity=0.160  Sum_probs=68.8

Q ss_pred             HHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCC-chhHHHHHHHHHHHHhcCCH
Q 009568          283 IEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH-KKSIKKEACWTISNITAGNR  361 (532)
Q Consensus       283 ~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~  361 (532)
                      .+...++.++.+++.++..    .-..+|-.++..-...-+.+-.|-++.|..++.++. +.-+|..|+.+|..++...+
T Consensus        70 re~~A~~~li~l~~~~~~~----~~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~  145 (249)
T PF06685_consen   70 REERALPPLIRLFSQDDDF----LEDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGP  145 (249)
T ss_pred             hhhhhHHHHHHHHcCCcch----HHHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCC
Confidence            3447789999999766541    122233322211111112233366777777787652 46789999999999998666


Q ss_pred             HHHHHHHHcCCHHHHHHH-HhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHH
Q 009568          362 DQIQAVIDAGLVGPLVNL-LQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLC  420 (532)
Q Consensus       362 ~~~~~l~~~~~i~~L~~l-l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~  420 (532)
                      .....+++  .+..++.. +...+..+-..-+..++.+-...-...++.+.+.|+++..+
T Consensus       146 ~~Re~vi~--~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~~~  203 (249)
T PF06685_consen  146 ISREEVIQ--YFRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRKAFEDGLVDPSF  203 (249)
T ss_pred             CCHHHHHH--HHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHHHHHcCCCCccc
Confidence            65666554  34444444 33332222222222222222211223344455667765543

The function of this family is unknown.

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=87.86  E-value=8.4  Score=30.96  Aligned_cols=74  Identities=11%  Similarity=0.247  Sum_probs=51.7

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHh-ccHHHHHHHhc--------CCCHHH
Q 009568          415 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEA-EGLEKIENLQS--------HDNNEI  485 (532)
Q Consensus       415 ~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~l~~L~~--------~~~~~v  485 (532)
                      +++.|..-|+.+++.|...+|.+|..++..|...            |...+.+. ..+..+.+...        ..+..|
T Consensus        39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~------------f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~V  106 (122)
T cd03572          39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD------------FKRELQRNSAQIRECANYKGPPDPLKGDSLNEKV  106 (122)
T ss_pred             HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH------------HHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHH
Confidence            5778888888888999899999999999887542            34333322 22333333333        245579


Q ss_pred             HHHHHHHHHHhCCCC
Q 009568          486 YEKAVKILETYWLEE  500 (532)
Q Consensus       486 ~~~a~~il~~~~~~~  500 (532)
                      +..|.++++-.|+++
T Consensus       107 R~~A~El~~~if~~~  121 (122)
T cd03572         107 REEAQELIKAIFSYS  121 (122)
T ss_pred             HHHHHHHHHHHhccC
Confidence            999999999999864

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=87.84  E-value=6.4  Score=36.92  Aligned_cols=155  Identities=19%  Similarity=0.198  Sum_probs=89.1

Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCC--ChHHHHHhhCC----CCHHHHHHHHHHHHHhhCCCchh
Q 009568          121 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG--AVPIFVKLLAS----PSDDVREQAVWALGNVAGDSPRC  194 (532)
Q Consensus       121 ~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g--~i~~L~~lL~~----~~~~v~~~a~~~L~nl~~~~~~~  194 (532)
                      .+...+..-. ++-++-++..+.-++. ++.....+...+  +...+..++..    ..+..+-.++++++|+..... .
T Consensus        67 ~~~~~~~~Wp-~~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~-~  143 (268)
T PF08324_consen   67 LLLKILLSWP-PESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP-G  143 (268)
T ss_dssp             HHHHHHCCS--CCC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC-C
T ss_pred             HHHHHHHhCC-CccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc-c
Confidence            3344443322 3446666666655555 444444443332  23344443322    567888899999999987655 4


Q ss_pred             HHHHHhcC--ChHHHHHHhhhh---hhhHHHHHHHHHhhhccCCC-CCC-CcccccchHHHHHHhhc-C-CCHHHHHHHH
Q 009568          195 RDLVLSQG--ALIPLLAQLNER---AKLSMLRNATWTLSNFCRGK-PQP-PFDQVRPALPALAQLVH-S-NDEEVLTDAC  265 (532)
Q Consensus       195 ~~~~~~~~--~l~~L~~ll~~~---~~~~~~~~a~~~L~~L~~~~-~~~-~~~~~~~~l~~L~~lL~-~-~d~~v~~~a~  265 (532)
                      +..+....  .+...+..+..+   .+..++..++..+.|++-.. ... .......++..+...+. . .|++....++
T Consensus       144 ~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~L  223 (268)
T PF08324_consen  144 RQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLL  223 (268)
T ss_dssp             HHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHH
T ss_pred             HHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHH
Confidence            55554432  233333333232   27788888888888887554 111 22233346666777443 2 5999999999


Q ss_pred             HHHHHhccCChhH
Q 009568          266 WALSYLSDGTNDK  278 (532)
Q Consensus       266 ~~L~~l~~~~~~~  278 (532)
                      -+++++...++..
T Consensus       224 vAlGtL~~~~~~~  236 (268)
T PF08324_consen  224 VALGTLLSSSDSA  236 (268)
T ss_dssp             HHHHHHHCCSHHH
T ss_pred             HHHHHHhccChhH
Confidence            9999999665544

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=87.79  E-value=4.6  Score=48.79  Aligned_cols=267  Identities=14%  Similarity=0.162  Sum_probs=138.7

Q ss_pred             cCCChHHHHHHHHHHHHHhcCCCC-----CchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 009568           84 WSDDSSLQLEATTQFRKLLSIERS-----PPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID  158 (532)
Q Consensus        84 ~s~~~~~~~~a~~~l~~l~~~~~~-----~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~  158 (532)
                      ...+.+.+..+...+..++.....     +..-. ....++..+..+-....++.++......+.      ...-.....
T Consensus       491 ~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~-~v~~vl~~ll~~aia~~~~~i~~~v~~~l~------~~~~~~laQ  563 (2341)
T KOG0891|consen  491 EADDSEIRKNAALTCCELLKYDIICSQTSPHALQ-VVKEVLSALLTVAIADTDPDIRIRVLSSLN------ERFDAQLAQ  563 (2341)
T ss_pred             hcccHHHHHHHHHHHHHHHhhhhhhhcccchHHH-HHHHHHHHHHHHhccCCCcchhhhHHhhhc------cchhhhhcC
Confidence            345677777777777766654211     00000 011223333332222222555554443333      222223444


Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCC
Q 009568          159 HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP  238 (532)
Q Consensus       159 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~  238 (532)
                      .+.+..+...+..+.-.+++.+...+++++..+|.+.-..+....+..+-.+- .+.-.-+...+..-+..+....+.-.
T Consensus       564 ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~-~sg~~r~~~~~a~~~~~~i~~~~~~i  642 (2341)
T KOG0891|consen  564 PDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELE-FSGMARTKEESAKLLCELIISSPVLI  642 (2341)
T ss_pred             chhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhh-hcchHHhHHHHHHHhhHHHHHHHHHH
Confidence            45556666777777888999999999999886663322211111111111111 11111111111111111111101111


Q ss_pred             cccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCC-CCccchhhHHHHHHHhhcCC
Q 009568          239 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLIPALRTVGNIVTGD  317 (532)
Q Consensus       239 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~  317 (532)
                      ...+...+..++..+...+..+...+..+++.|+..........++ ..++.+...+.+ .+..-+..++++++++....
T Consensus       643 ~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~  721 (2341)
T KOG0891|consen  643 SPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESST  721 (2341)
T ss_pred             HhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhccc
Confidence            1223445567777777888888888899999988654433333444 455555555544 45667888999999998765


Q ss_pred             cchhHHHhh-cCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC
Q 009568          318 DFQTQCIIT-YGALPYLLGLLTHSHKKSIKKEACWTISNITAG  359 (532)
Q Consensus       318 ~~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~  359 (532)
                      ........+ .-++..+...+.......++.++...++++...
T Consensus       722 ~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~  764 (2341)
T KOG0891|consen  722 GYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGAL  764 (2341)
T ss_pred             ceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhccc
Confidence            432222221 234556666666665677888888888876653

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.70  E-value=19  Score=40.86  Aligned_cols=61  Identities=20%  Similarity=0.264  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009568          428 PRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETY  496 (532)
Q Consensus       428 ~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~  496 (532)
                      .+.....+.+|..++...-+.-.      ..|.|....++.  ++-+..+..+.++++...|...+++.
T Consensus      1070 tet~~ltisgIaklf~e~fk~ll------nln~f~~vwe~l--l~flkrl~s~~s~e~slsai~~~qel 1130 (1610)
T KOG1848|consen 1070 TETSCLTISGIAKLFSENFKLLL------NLNGFLDVWEEL--LQFLKRLHSDISPEISLSAIKALQEL 1130 (1610)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHH------hcccHHHHHHHH--HHHHHHHHhcCChHhHHHHHHHHHHH
Confidence            45566777888888764433322      344466655543  66777788889999998888777664

>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor

Probab=87.44  E-value=8.9  Score=41.09  Aligned_cols=157  Identities=17%  Similarity=0.211  Sum_probs=107.7

Q ss_pred             cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (532)
Q Consensus        75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  154 (532)
                      .|..++..|.|++..+...+-..+...+..++.+        -++..||...-+..+.    .|+.+|..+-.  +..+ 
T Consensus         5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~l~~y~~~t~s~----~~~~il~~~~~--P~~K-   69 (668)
T PF04388_consen    5 SITELLSLLESNDLSVLEEIKALLQELLNSDREP--------WLVNGLVDYYLSTNSQ----RALEILVGVQE--PHDK-   69 (668)
T ss_pred             cHHHHHHHhcCCchhhHHHHHHHHHHHhhccchH--------HHHHHHHHHHhhcCcH----HHHHHHHhcCC--ccHH-
Confidence            5788999999999998888888888887754222        1466777765544422    34455555433  2111 


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC
Q 009568          155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  234 (532)
Q Consensus       155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~  234 (532)
                           .++..|-..+..  +.-|-.++..|+.+....|..-..+.+...+..|+++|..+.+..+...|+.+|..|.-..
T Consensus        70 -----~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~i  142 (668)
T PF04388_consen   70 -----HLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHI  142 (668)
T ss_pred             -----HHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccc
Confidence                 223455555653  5677889999999998777667788899999999999988889999999998888887654


Q ss_pred             CCCCcccccchHHHHHHhh
Q 009568          235 PQPPFDQVRPALPALAQLV  253 (532)
Q Consensus       235 ~~~~~~~~~~~l~~L~~lL  253 (532)
                      |..-......++.+..+++
T Consensus       143 p~~l~~~L~~Lf~If~Rl~  161 (668)
T PF04388_consen  143 PSSLGPHLPDLFNIFGRLL  161 (668)
T ss_pred             cchhhHHHHHHHHHHHHHH
Confidence            4433334445555555555

The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.15  E-value=47  Score=35.71  Aligned_cols=395  Identities=13%  Similarity=0.184  Sum_probs=190.7

Q ss_pred             HHHhhhcCC--ChHHHHHHHHHHHHHhcCC---CCCchhHhhhC--CcHH-HHHHhhcCCCCHHHHHHHHHHHHHHhcCC
Q 009568           78 AMVAGVWSD--DSSLQLEATTQFRKLLSIE---RSPPIEEVIQS--GVVP-RFVEFLMREDYPQLQFEAAWALTNIASGT  149 (532)
Q Consensus        78 ~lv~~L~s~--~~~~~~~a~~~l~~l~~~~---~~~~~~~~i~~--g~i~-~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~  149 (532)
                      .+++.+.++  |+.++..|+..+.+.++.+   ..+....+.+.  ..+. .++.++-+.. ..+|..--.+|+-++..+
T Consensus        41 ~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv~lMl~s~-~~iQ~qlseal~~Ig~~D  119 (960)
T KOG1992|consen   41 LLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIVTLMLSSP-FNIQKQLSEALSLIGKRD  119 (960)
T ss_pred             HHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHhccc
Confidence            455555543  6889999999999998842   11111122221  1233 3455555554 688888888888888633


Q ss_pred             -hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC-CCchhHHH------HHh-cCChHHHHHHhhhh------
Q 009568          150 -SENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAG-DSPRCRDL------VLS-QGALIPLLAQLNER------  214 (532)
Q Consensus       150 -~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~-~~~~~~~~------~~~-~~~l~~L~~ll~~~------  214 (532)
                       |+....+     +|-|+.-+++.|-.+....+.+-..|.. -.+.+|..      ... .....++..++.+.      
T Consensus       120 FP~kWptL-----l~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~  194 (960)
T KOG1992|consen  120 FPDKWPTL-----LPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQR  194 (960)
T ss_pred             cchhhHHH-----HHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhh
Confidence             3333322     4666666666554443333333332321 11111111      000 01223444444211      


Q ss_pred             --hhhH-------HHHHHHHHhhhccCCC-CCCCcccccchHHHHHHhhcCCC-------------HHHHHHHHHHHHHh
Q 009568          215 --AKLS-------MLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSND-------------EEVLTDACWALSYL  271 (532)
Q Consensus       215 --~~~~-------~~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~lL~~~d-------------~~v~~~a~~~L~~l  271 (532)
                        .+..       ++.-++.....|+..+ |.--.......++.+.+++..+.             .+++...|..+.-.
T Consensus       195 ~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY  274 (960)
T KOG1992|consen  195 HANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLY  274 (960)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHH
Confidence              1111       2223333444454443 22222334556666666665221             23455666666655


Q ss_pred             ccCChhHHHHHHHhCchHHHHHhhCCCCc-----cchhhHHHHHHHhhcCCcc--------------------------h
Q 009568          272 SDGTNDKIQAVIEAGVCPRLVELLGHPSP-----SVLIPALRTVGNIVTGDDF--------------------------Q  320 (532)
Q Consensus       272 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-----~v~~~al~~L~nl~~~~~~--------------------------~  320 (532)
                      +...++..+.++. .++...-.+|.+..+     .....|+..|.+++.....                          .
T Consensus       275 ~~kYeEef~~fl~-~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~e  353 (960)
T KOG1992|consen  275 ATKYEEEFQPFLP-DFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREE  353 (960)
T ss_pred             HHhhHHHHHhhHH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchh
Confidence            5555555553333 334334445543222     2344556666666542211                          1


Q ss_pred             hHHHhhcCchHHHHHHhcCCCchhH-HHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHH-HHhc--CchhHHHHHHHHHH
Q 009568          321 TQCIITYGALPYLLGLLTHSHKKSI-KKEACWTISNITAGNRDQIQAVIDAGLVGPLVN-LLQN--AEFDIKKEAAWAIS  396 (532)
Q Consensus       321 ~~~~~~~~~l~~L~~lL~~~~~~~v-~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~-ll~~--~~~~v~~~a~~aL~  396 (532)
                      -..+.+.+-+..+-+-|..+ |... |+.||-.+.-++......+..++.. .+..+++ ...+  .+..-+..|.+.+.
T Consensus       354 DeElFED~pleYiRRDlEGs-DvdTRRR~a~dlvrgL~~~fe~~vt~v~~~-~v~~~l~~y~~nPS~nWk~kd~aiyL~t  431 (960)
T KOG1992|consen  354 DEELFEDNPLEYIRRDLEGS-DVDTRRRAAIDLVRGLCKNFEGQVTGVFSS-EVQRLLDQYSKNPSGNWKKKDRAIYLVT  431 (960)
T ss_pred             hHHHhccCHHHHHHHhcccC-CcchhHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHhccCCCccccccchhhhhhH
Confidence            12233445566666666666 5444 5667778888887655555444433 2233333 2222  35566677777777


Q ss_pred             HhhcCCCHH------------HHHHHHHcCChHHHHhhcC---CCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHH
Q 009568          397 NATSGGTHE------------QIKYLVREGCIKPLCDLFV---CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQY  461 (532)
Q Consensus       397 nl~~~~~~~------------~~~~l~~~~~l~~L~~lL~---~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~  461 (532)
                      .++..+...            ...+ ....+++   ++++   ...|-+..   ++|.-++.+-...          +  
T Consensus       432 alaik~~t~~~Gvtstn~lvdv~~F-f~~~ilp---~L~s~~vn~~pilka---~aIKy~~~FR~ql----------~--  492 (960)
T KOG1992|consen  432 ALAIKGQTAKHGVTSTNELVDVVDF-FANQILP---DLLSPNVNEFPILKA---DAIKYIYTFRNQL----------G--  492 (960)
T ss_pred             HHHhhcchhhcceeeccccccHHHH-HHHHhhH---HhccCccccccchhh---cccceeeeecccC----------C--
Confidence            776654211            0111 1111111   1222   11122222   2222222221111          1  


Q ss_pred             HHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCcc
Q 009568          462 AQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDD  502 (532)
Q Consensus       462 ~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~~~~  502 (532)
                      ...+  ...+..+......+..-|+.+|...+++.+.-.++
T Consensus       493 ~~~l--m~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~  531 (960)
T KOG1992|consen  493 KEHL--MALLPRLIRFLEAESRVVHSYAAIAIEKLLTVREN  531 (960)
T ss_pred             hHHH--HHHHHHHHHhccCcchHHHHHHHHHHHhccccccC
Confidence            1111  22356677778888899999999999999887654

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=87.08  E-value=4.6  Score=34.94  Aligned_cols=87  Identities=16%  Similarity=0.214  Sum_probs=65.3

Q ss_pred             CCHHHHHHHHhcCchhHHHHHHHHHHHhhcC-CCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhh
Q 009568          371 GLVGPLVNLLQNAEFDIKKEAAWAISNATSG-GTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEK  449 (532)
Q Consensus       371 ~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~-~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~  449 (532)
                      -.+|.+++-+...+...+--|...+..+... +.......+-  .++.+|...|.+.|+++...+|.+|..++..++...
T Consensus        38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlP--qLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG  115 (183)
T PF10274_consen   38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLP--QLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG  115 (183)
T ss_pred             hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence            3678888888888888888888888888876 3333333332  378889999999999999999999999977766553


Q ss_pred             hccCCCccchHHHHHH
Q 009568          450 NMGTATADVNQYAQLV  465 (532)
Q Consensus       450 ~~~~~~~~~~~~~~~~  465 (532)
                      .      ...+|...+
T Consensus       116 ~------aLvPyyrqL  125 (183)
T PF10274_consen  116 E------ALVPYYRQL  125 (183)
T ss_pred             H------HHHHHHHHH
Confidence            2      455666554

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=86.70  E-value=2  Score=35.74  Aligned_cols=74  Identities=11%  Similarity=0.072  Sum_probs=60.4

Q ss_pred             ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 009568           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS  147 (532)
Q Consensus        74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~  147 (532)
                      +.+..+.+.|+++++.++..|+..|..++..-.......+...+++..|+.++....++.++..++..+...+.
T Consensus        41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  114 (142)
T cd03569          41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL  114 (142)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence            56788889999999999999999999988864344566677888999999999854448899999888887764

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=86.36  E-value=6.4  Score=37.22  Aligned_cols=72  Identities=13%  Similarity=0.157  Sum_probs=49.3

Q ss_pred             CchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchh-HHHhhcCchHHHHHHhcC-----------CCchhHHHHHHHHH
Q 009568          286 GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQT-QCIITYGALPYLLGLLTH-----------SHKKSIKKEACWTI  353 (532)
Q Consensus       286 ~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~-~~~~~~~~l~~L~~lL~~-----------~~~~~v~~~a~~~L  353 (532)
                      -++|.++.++++.++.++..++.+|..+....+... ..+...|..+.+...+..           .+...+-..|.-++
T Consensus       119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L  198 (282)
T PF10521_consen  119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL  198 (282)
T ss_pred             HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence            478999999999999999999999999998655332 235566665555444321           11445666666666


Q ss_pred             HHHh
Q 009568          354 SNIT  357 (532)
Q Consensus       354 ~nl~  357 (532)
                      ..++
T Consensus       199 ~~L~  202 (282)
T PF10521_consen  199 LSLL  202 (282)
T ss_pred             HHHH
Confidence            6663

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=86.25  E-value=6.1  Score=32.88  Aligned_cols=74  Identities=11%  Similarity=0.027  Sum_probs=60.2

Q ss_pred             CHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhh
Q 009568          372 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV-CPDPRIVTVCLEGLENILKVG  445 (532)
Q Consensus       372 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~-~~d~~v~~~al~~L~~l~~~~  445 (532)
                      .+..|..-+.++++.++..|+..|-.++.++....-..+...+.+..|..++. ..++.|+..++..+.......
T Consensus        42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f  116 (142)
T cd03569          42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF  116 (142)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence            45567777888999999999999999999877777777778889999999887 567789999888887776543

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=85.80  E-value=4.9  Score=33.53  Aligned_cols=72  Identities=15%  Similarity=0.221  Sum_probs=58.7

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcC-CCHHHHHHHHHHH
Q 009568          415 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSH-DNNEIYEKAVKIL  493 (532)
Q Consensus       415 ~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~-~~~~v~~~a~~il  493 (532)
                      ++..|..-|.++++.++..+|..|..+++.+...            |...+...+.++.|..+... .++.|+.++..+|
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~------------fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li  105 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKR------------FHQEVASRDFTQELKKLINDRVHPTVKEKLREVV  105 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH------------HHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence            5667777788899999999999999999876542            56666677788888888766 8899999999999


Q ss_pred             HHhCC
Q 009568          494 ETYWL  498 (532)
Q Consensus       494 ~~~~~  498 (532)
                      ..+-.
T Consensus       106 ~~W~~  110 (144)
T cd03568         106 KQWAD  110 (144)
T ss_pred             HHHHH
Confidence            98743

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=85.72  E-value=39  Score=38.80  Aligned_cols=73  Identities=11%  Similarity=0.166  Sum_probs=55.5

Q ss_pred             cCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009568          327 YGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSG  401 (532)
Q Consensus       327 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~  401 (532)
                      .+++|.|..-|.+. +..+|..|...+|.+......+.. =-...+....+.-+.+.+.+||.+++....++...
T Consensus       258 ~~vip~l~~eL~se-~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~  330 (1266)
T KOG1525|consen  258 LAVIPQLEFELLSE-QEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN  330 (1266)
T ss_pred             HHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc
Confidence            47888888888888 899999999999999875444332 00123455666666777899999999999988876

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=85.66  E-value=19  Score=31.64  Aligned_cols=71  Identities=21%  Similarity=0.277  Sum_probs=55.7

Q ss_pred             cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh
Q 009568          118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC  194 (532)
Q Consensus       118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~  194 (532)
                      .++.++++..+++ ..++..|+.++.-+....--+-.     .++|.|+.+..++++.++..|...+..+....+..
T Consensus         9 yl~~Il~~~~~~~-~~vr~~Al~~l~~il~qGLvnP~-----~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~   79 (187)
T PF12830_consen    9 YLKNILELCLSSD-DSVRLAALQVLELILRQGLVNPK-----QCVPTLIALETSPNPSIRSRAYQLLKELHEKHESL   79 (187)
T ss_pred             HHHHHHHHHhCCC-HHHHHHHHHHHHHHHhcCCCChH-----HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHH
Confidence            5677778777887 89999999999888763322211     25799999999999999999999999997655543

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]

Probab=85.31  E-value=51  Score=34.34  Aligned_cols=58  Identities=19%  Similarity=0.303  Sum_probs=45.1

Q ss_pred             CCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 009568           85 SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS  147 (532)
Q Consensus        85 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~  147 (532)
                      +.++.+....+..+...+.   .-|.+.+.+.+++..+..-+.+.  |+.|..++.||+.++.
T Consensus       204 ~~~~SLi~ATLesllrfl~---wiPl~yIfeTnIieLv~~~f~s~--pd~r~~tl~CLtEi~~  261 (1053)
T COG5101         204 SRDESLIEATLESLLRFLE---WIPLDYIFETNIIELVLEHFNSM--PDTRVATLSCLTEIVD  261 (1053)
T ss_pred             cCChHHHHHHHHHHHHHHh---hCchhHHHHHHHHHHHHHHhccC--CchhHHHHHHHHHHHh
Confidence            5577777777888877764   57888888989999888776653  4678888889888876

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=85.06  E-value=4.1  Score=36.67  Aligned_cols=85  Identities=18%  Similarity=0.248  Sum_probs=61.7

Q ss_pred             cchhhHHHHHHHhhcCCcchhHHHhhc-------CchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH-HcCC
Q 009568          301 SVLIPALRTVGNIVTGDDFQTQCIITY-------GALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVI-DAGL  372 (532)
Q Consensus       301 ~v~~~al~~L~nl~~~~~~~~~~~~~~-------~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~  372 (532)
                      .-+..|+.+|+.|+-... ..+.++..       .++..|.+++...+++..|+-|.-.|++++.++......+. +.+.
T Consensus       139 SPqrlaLEaLcKLsV~e~-NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~  217 (257)
T PF12031_consen  139 SPQRLALEALCKLSVIEN-NVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC  217 (257)
T ss_pred             CHHHHHHHHHHHhheecc-CcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence            347779999999986332 33333322       35667777777776888999999999999998776665544 6788


Q ss_pred             HHHHHHHHhcCchh
Q 009568          373 VGPLVNLLQNAEFD  386 (532)
Q Consensus       373 i~~L~~ll~~~~~~  386 (532)
                      |..|+.+++..+..
T Consensus       218 i~~Li~FiE~a~~~  231 (257)
T PF12031_consen  218 ISHLIAFIEDAEQN  231 (257)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999876433

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=84.83  E-value=19  Score=28.98  Aligned_cols=87  Identities=20%  Similarity=0.237  Sum_probs=59.9

Q ss_pred             HHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc-CChHHHHhhcCCCCH--
Q 009568          352 TISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVRE-GCIKPLCDLFVCPDP--  428 (532)
Q Consensus       352 ~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~-~~l~~L~~lL~~~d~--  428 (532)
                      -|.+++..++.....     ++..|..-|++.++.|+..++..|..++..|++.+...+... ..|..+.++-..+|+  
T Consensus        24 Eia~~t~~s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~   98 (122)
T cd03572          24 EIAKLTRKSVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLK   98 (122)
T ss_pred             HHHHHHHcCHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCccc
Confidence            445555554444433     456788888888999999999999999999988887776643 445555555443332  


Q ss_pred             ------HHHHHHHHHHHHHHH
Q 009568          429 ------RIVTVCLEGLENILK  443 (532)
Q Consensus       429 ------~v~~~al~~L~~l~~  443 (532)
                            .|+..|-+++..|+.
T Consensus        99 Gd~~~~~VR~~A~El~~~if~  119 (122)
T cd03572          99 GDSLNEKVREEAQELIKAIFS  119 (122)
T ss_pred             CcchhHHHHHHHHHHHHHHhc
Confidence                  477777777777764

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=84.30  E-value=46  Score=40.93  Aligned_cols=255  Identities=15%  Similarity=0.077  Sum_probs=128.9

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH---HHH--hcCChHHHHH
Q 009568          135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD---LVL--SQGALIPLLA  209 (532)
Q Consensus       135 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~---~~~--~~~~l~~L~~  209 (532)
                      ...|.+.+.++-.........+-     ..+...+...+.+++..+...++.+......+.+   ...  ....+..+..
T Consensus       461 ~~~a~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~  535 (2341)
T KOG0891|consen  461 IQLAFKTLGGFKFSGYSLTLFVQ-----QCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLT  535 (2341)
T ss_pred             HHHHHHHHhhhhhhhhhHHHHHH-----HHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHH
Confidence            44466777666552222211111     2234455667888888887666655432221110   001  1122333333


Q ss_pred             HhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchH
Q 009568          210 QLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCP  289 (532)
Q Consensus       210 ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~  289 (532)
                      +-..++++.++......+.     ............+..+...++...-.++..+...+++++..++...-..+....+.
T Consensus       536 ~aia~~~~~i~~~v~~~l~-----~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~  610 (2341)
T KOG0891|consen  536 VAIADTDPDIRIRVLSSLN-----ERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLE  610 (2341)
T ss_pred             HhccCCCcchhhhHHhhhc-----cchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHH
Confidence            3333444444433332222     11111122233444455555666667788888888888877664433333322222


Q ss_pred             HHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009568          290 RLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID  369 (532)
Q Consensus       290 ~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~  369 (532)
                      .+-.+..+....+...+..-+..+..+.+......++ ..+..++..+... +..+.+.+..+++.+|.-+.+......+
T Consensus       611 ~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v~-~~l~~~~~~~~~~-~s~~~~~~~~~~~eL~~v~g~~~~~~~~  688 (2341)
T KOG0891|consen  611 LLTELEFSGMARTKEESAKLLCELIISSPVLISPYVG-PILLVLLPKLQDP-SSGVEKAVLETIGELCAVGGEEMVKWVD  688 (2341)
T ss_pred             HhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhhcC-chHHHHHHHHhcc-chhhHHHHHHHHHHHHHhccchhhhccc
Confidence            2222222222222222333333333323322222222 4556777788887 7889999999999999833332333334


Q ss_pred             cCCHHHHHHHHhc-CchhHHHHHHHHHHHhhcCC
Q 009568          370 AGLVGPLVNLLQN-AEFDIKKEAAWAISNATSGG  402 (532)
Q Consensus       370 ~~~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~~~  402 (532)
                       ..++.+.+.+.. +...-+..+.+++.++....
T Consensus       689 -~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~  721 (2341)
T KOG0891|consen  689 -ELFSLIIKMLQDQSSLGKRLAALKALGQLESST  721 (2341)
T ss_pred             -hHHHHHHHHHHHhhhhhchhHHHHHhhhhhccc
Confidence             455666665554 35667788999999998754

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.05  E-value=58  Score=38.56  Aligned_cols=231  Identities=16%  Similarity=0.079  Sum_probs=117.6

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHH
Q 009568          119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDL  197 (532)
Q Consensus       119 i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~  197 (532)
                      +..++..|..++ |..+..+..+++.++..-++.  .++ .+....++.-+.+ .++..|.--..+++.+-.+....-..
T Consensus       878 ~~l~~~sl~~~~-p~~rc~~~ea~arLaq~v~~~--~f~-a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~  953 (2067)
T KOG1822|consen  878 LTLIVNSLINPN-PKLRCAAAEALARLAQVVGSA--PFV-ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG  953 (2067)
T ss_pred             HHHHhhhhccCC-hHHHHHHHHHHHHHHHhcccc--chH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence            444555556666 788888888888877621111  011 1223455555555 45555554455555553222111111


Q ss_pred             HHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCC---HHHHHHH----------
Q 009568          198 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSND---EEVLTDA----------  264 (532)
Q Consensus       198 ~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d---~~v~~~a----------  264 (532)
                      -.....+..++.+-.++.++.++..++.++..+...........+...+..+..++.+..   .++...-          
T Consensus       954 qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~ 1033 (2067)
T KOG1822|consen  954 QHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDE 1033 (2067)
T ss_pred             hhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhH
Confidence            112234566777775666779999999999888876522223444555555555554321   2222111          


Q ss_pred             ---HHHHHHhccCChh-HHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCC
Q 009568          265 ---CWALSYLSDGTND-KIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS  340 (532)
Q Consensus       265 ---~~~L~~l~~~~~~-~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~  340 (532)
                         ..+++.=...+.. ..-..+....+-...-++.++++-++..+..++-++-...+....   -.-+++.+..++.++
T Consensus      1034 ~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~~~l~s~ 1110 (2067)
T KOG1822|consen 1034 DALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLCSLLSSS 1110 (2067)
T ss_pred             HHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHHHHhcch
Confidence               1112111111111 011122223344444456777888999999999998876663221   113455666666655


Q ss_pred             CchhHHHHHHHHHHHHh
Q 009568          341 HKKSIKKEACWTISNIT  357 (532)
Q Consensus       341 ~~~~v~~~a~~~L~nl~  357 (532)
                       .--.|+....++..+.
T Consensus      1111 -~~i~r~~~~~clrql~ 1126 (2067)
T KOG1822|consen 1111 -YLILRRASFSCLRQLV 1126 (2067)
T ss_pred             -hhhhhhhHHhhhhHHh
Confidence             3334444444444443

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=83.88  E-value=67  Score=34.61  Aligned_cols=184  Identities=13%  Similarity=0.110  Sum_probs=87.2

Q ss_pred             ccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhC-chH-------HHHHhhCCCCccchhhHHHHHH
Q 009568          240 DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAG-VCP-------RLVELLGHPSPSVLIPALRTVG  311 (532)
Q Consensus       240 ~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-~l~-------~L~~lL~~~~~~v~~~al~~L~  311 (532)
                      .....++|.+++.|+.+..-+-.+|+.++-.+..-.+..-..+...+ +.|       .|+..++.+...--....+++.
T Consensus       494 ~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaIm  573 (960)
T KOG1992|consen  494 EHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIM  573 (960)
T ss_pred             HHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHH
Confidence            34457889999999998888988998888766532222111122222 222       2222233332222223333333


Q ss_pred             HhhcCCcchhHHHhh---cCchHHHHHHhcCCCchhHHH---HHHHHHHHH-hcCCHHHHHHHHHcCCHHHHHHHHhcCc
Q 009568          312 NIVTGDDFQTQCIIT---YGALPYLLGLLTHSHKKSIKK---EACWTISNI-TAGNRDQIQAVIDAGLVGPLVNLLQNAE  384 (532)
Q Consensus       312 nl~~~~~~~~~~~~~---~~~l~~L~~lL~~~~~~~v~~---~a~~~L~nl-~~~~~~~~~~l~~~~~i~~L~~ll~~~~  384 (532)
                      .+..-.++.+.....   .++-+.+...-+++.+|..-.   ++..++-+. +..++..+..+. ..++|.+...+..+-
T Consensus       574 Rii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e-~aL~p~fq~Il~eDI  652 (960)
T KOG1992|consen  574 RIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLE-EALFPVFQTILSEDI  652 (960)
T ss_pred             HHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHH-HHHHHHHHHHHHHHH
Confidence            333322222211111   122223333334443443333   333333333 334555444433 347777777777664


Q ss_pred             hhHHHHHHHHHHHhhcCC---CHHHH---------HHHH-HcCChHHHHhhcC
Q 009568          385 FDIKKEAAWAISNATSGG---THEQI---------KYLV-REGCIKPLCDLFV  424 (532)
Q Consensus       385 ~~v~~~a~~aL~nl~~~~---~~~~~---------~~l~-~~~~l~~L~~lL~  424 (532)
                      .+.--.+...++-+....   -++..         +.++ ..|-+++++.+|.
T Consensus       653 ~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~  705 (960)
T KOG1992|consen  653 QEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQ  705 (960)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHH
Confidence            555555555555544322   11211         2233 2577888888775

>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species

Probab=83.85  E-value=34  Score=31.47  Aligned_cols=90  Identities=18%  Similarity=0.220  Sum_probs=52.7

Q ss_pred             hCCChHHHHHhhCCCCHH--------HHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhh-hhhHHHHHHHHHhh
Q 009568          158 DHGAVPIFVKLLASPSDD--------VREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNER-AKLSMLRNATWTLS  228 (532)
Q Consensus       158 ~~g~i~~L~~lL~~~~~~--------v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~~~~~a~~~L~  228 (532)
                      +..+++.++++++.++..        +.+....++..+            -.|-+..|..++.+. .+.-++..++.+|.
T Consensus        71 e~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv------------~~G~~~~L~~li~~~~~~~yvR~aa~~aL~  138 (249)
T PF06685_consen   71 EERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASV------------GDGDIEPLKELIEDPDADEYVRMAAISALA  138 (249)
T ss_pred             hhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHH------------hCCCHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            346789999999765432        122222222222            345577777777433 36678888999999


Q ss_pred             hccCCCCCCCcccccchHHHHHHhhcCCCHH
Q 009568          229 NFCRGKPQPPFDQVRPALPALAQLVHSNDEE  259 (532)
Q Consensus       229 ~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~  259 (532)
                      .+....+......+.-+-..+-..+..++..
T Consensus       139 ~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~  169 (249)
T PF06685_consen  139 FLVHEGPISREEVIQYFRELLNYFLERNPSF  169 (249)
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHhccCchH
Confidence            9998876555444433333443435444444

The function of this family is unknown.

>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []

Probab=83.22  E-value=44  Score=32.02  Aligned_cols=154  Identities=12%  Similarity=0.063  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHHHhcCChhhHHHHHhCC-----------ChHHHHHhhC------CCCHHHHHHHHHHHHHhhCCCchh
Q 009568          132 PQLQFEAAWALTNIASGTSENTKVVIDHG-----------AVPIFVKLLA------SPSDDVREQAVWALGNVAGDSPRC  194 (532)
Q Consensus       132 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g-----------~i~~L~~lL~------~~~~~v~~~a~~~L~nl~~~~~~~  194 (532)
                      -++|..|+.|+.....++++.+..+++.-           ....|+..|-      +.++--..-|+.+|..+..+++..
T Consensus        52 f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~~  131 (312)
T PF04869_consen   52 FDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPEA  131 (312)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHHH
Confidence            68999999999999998999888877521           1112333332      122322334445555555555554


Q ss_pred             HHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhc-----CCCHHHHHHHHHHHH
Q 009568          195 RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH-----SNDEEVLTDACWALS  269 (532)
Q Consensus       195 ~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~-----~~d~~v~~~a~~~L~  269 (532)
                      |+.+..-                          ........    ......++.+..+|.     ..++.++.--+..|+
T Consensus       132 Ke~al~V--------------------------~~~~~~~g----e~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~  181 (312)
T PF04869_consen  132 KEQALRV--------------------------TEGDESSG----EEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLI  181 (312)
T ss_dssp             HHHHTT----------------------------EE--STT----S--EEHHHHHHHHTTT----T--HHHHHHHHHHHH
T ss_pred             HHHHHcc--------------------------cCCCCCCC----CCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHH
Confidence            4443321                          00011101    111223444444332     346777777777777


Q ss_pred             HhccCChhHHHHHHHh-CchHHHHHhhCC-C--CccchhhHHHHHHHhhc
Q 009568          270 YLSDGTNDKIQAVIEA-GVCPRLVELLGH-P--SPSVLIPALRTVGNIVT  315 (532)
Q Consensus       270 ~l~~~~~~~~~~~~~~-~~l~~L~~lL~~-~--~~~v~~~al~~L~nl~~  315 (532)
                      ....+++..+..++.. ..++.|+..... +  +.-++--++..||-+..
T Consensus       182 ~WL~e~p~AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicye  231 (312)
T PF04869_consen  182 VWLFECPDAVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYE  231 (312)
T ss_dssp             HHHTT-HHHHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHH
Confidence            7666777777777766 478888887533 2  33345555555665544

p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.

>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []

Probab=83.06  E-value=41  Score=31.48  Aligned_cols=187  Identities=17%  Similarity=0.230  Sum_probs=102.1

Q ss_pred             hhccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009568           72 KLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE  151 (532)
Q Consensus        72 ~~~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~  151 (532)
                      -++.+..|...|+.+|+..+ ...+++...          .+++..++|.|+..=.  + +.+-..++..|.+++.  |-
T Consensus        11 cl~~LkdL~r~lr~dd~~~~-~v~r~lg~~----------~iv~~DLiPiL~~~~~--~-~~l~~~~l~LLV~LT~--P~   74 (266)
T PF04821_consen   11 CLECLKDLKRFLRRDDEDQR-DVRRQLGEW----------NIVQKDLIPILISYKD--D-DKLFLACLRLLVNLTW--PI   74 (266)
T ss_pred             HHHHHHHHHHHHHHhCcchH-HHHHHHHHh----------chhhhhHHHHHHhccC--c-hHHHHHHHHHHHHhCC--CH
Confidence            45678888888888877665 344444332          1455668887776533  4 7899999999999987  11


Q ss_pred             hHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhh----------hhhhhHH
Q 009568          152 NTKVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN----------ERAKLSM  219 (532)
Q Consensus       152 ~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~----------~~~~~~~  219 (532)
                                   .+- ...  .+..-+.........+.    .++..+...+++..++.++.          ...+..+
T Consensus        75 -------------~~~-~~~~~~~~~~~~~~~~l~~~l~----~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~i  136 (266)
T PF04821_consen   75 -------------ELL-VESQPKDKNQRRNIPELLKYLQ----SYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLI  136 (266)
T ss_pred             -------------HHh-ccCCCCChHHHHHHHHHHHHHH----HHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHH
Confidence                         110 111  12222222222222222    24455555555565555542          2235667


Q ss_pred             HHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCC-
Q 009568          220 LRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP-  298 (532)
Q Consensus       220 ~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-  298 (532)
                      .+.++..+.|+..-++.+.......           .+...+...+|+              +.+.|+...|+.+.++. 
T Consensus       137 i~lvL~LiRNlL~Ip~~~~~~~~~~-----------~~~~~~d~li~~--------------l~~~~v~~lLL~l~s~~~  191 (266)
T PF04821_consen  137 IELVLTLIRNLLAIPDPPSASKRSD-----------EDSSLHDQLIWA--------------LFESGVLDLLLTLASSPQ  191 (266)
T ss_pred             HHHHHHHHHHHhcCCCCcccccccc-----------hhHHHHHHHHHH--------------HHHcCHHHHHHHHHhCcc
Confidence            7778888888877643222111111           223334444433              34457777888777765 


Q ss_pred             CccchhhHHHHHHHhhcCC
Q 009568          299 SPSVLIPALRTVGNIVTGD  317 (532)
Q Consensus       299 ~~~v~~~al~~L~nl~~~~  317 (532)
                      ........+.++..+..+.
T Consensus       192 ~~~f~~~lLEIi~ll~k~~  210 (266)
T PF04821_consen  192 ESDFNLLLLEIIYLLFKGQ  210 (266)
T ss_pred             ccchhhHHHHHHHHHHcCC
Confidence            3334445566666655543

This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=83.06  E-value=11  Score=30.86  Aligned_cols=74  Identities=8%  Similarity=-0.037  Sum_probs=59.4

Q ss_pred             CHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCC---CCHHHHHHHHHHHHHHHHhh
Q 009568          372 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC---PDPRIVTVCLEGLENILKVG  445 (532)
Q Consensus       372 ~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~---~d~~v~~~al~~L~~l~~~~  445 (532)
                      .+..|-.-|.++++.++..|+..|-.+..++...+...+.....+..|..++..   .++.|+..++..+...-...
T Consensus        38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f  114 (133)
T cd03561          38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF  114 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            355677778889999999999999999998887776776776777778888875   47789999988888776543

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)

Probab=82.99  E-value=20  Score=34.65  Aligned_cols=182  Identities=13%  Similarity=0.146  Sum_probs=104.5

Q ss_pred             cchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHH-Hh---cCC----CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 009568          301 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLG-LL---THS----HKKSIKKEACWTISNITAGNRDQIQAVIDAGL  372 (532)
Q Consensus       301 ~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~-lL---~~~----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~  372 (532)
                      .++...++.+.......+.. .. +...++|.++. +|   +.+    .+++|-.-...++..+-....+.+..+++. +
T Consensus        42 ~iKkeIL~Li~t~i~~~~~~-~~-v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~-v  118 (319)
T PF08767_consen   42 TIKKEILKLIETFISKAEDP-EE-VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEA-V  118 (319)
T ss_dssp             HHHHHHHHHHHHHHHT-S-H-HH-HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHH-H
T ss_pred             HHHHHHHHHHHHHHhccCCH-HH-HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHH-H
Confidence            36777888888887765533 22 34466676666 33   222    133333333333334433223334445543 5


Q ss_pred             HHHHHHHHhcC---chhHHHHHHHHHHHhhcCC-------CHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 009568          373 VGPLVNLLQNA---EFDIKKEAAWAISNATSGG-------THEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENIL  442 (532)
Q Consensus       373 i~~L~~ll~~~---~~~v~~~a~~aL~nl~~~~-------~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~  442 (532)
                      +...+.++..+   -|+.|..-...|..+....       ++++...     ++..++-.+++.+.++...++.++..++
T Consensus       119 f~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~-----~idsi~wg~kh~~~~I~~~~L~~l~~ll  193 (319)
T PF08767_consen  119 FECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKL-----VIDSIVWGFKHTNREISETGLNILLELL  193 (319)
T ss_dssp             HHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHH-----HHHHHHHHHTSSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHH-----HHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence            66677777654   4688877777777766532       2222222     5667777788999999999999999999


Q ss_pred             HhhhhhhhccCCCccchHHHHHHHHhccHHHH----HHHhcCCCHHHHHHHHHHHHHhCCC
Q 009568          443 KVGEAEKNMGTATADVNQYAQLVEEAEGLEKI----ENLQSHDNNEIYEKAVKILETYWLE  499 (532)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l----~~L~~~~~~~v~~~a~~il~~~~~~  499 (532)
                      ....+..         ..+...+-+...++.+    .-+....+....+....++..+|.-
T Consensus       194 ~~~~~~~---------~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~  245 (319)
T PF08767_consen  194 NNVSKTN---------PEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFRL  245 (319)
T ss_dssp             HHHHH-S---------HHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHH
T ss_pred             HHHHhcC---------HHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHH
Confidence            8877611         1123333333333333    4445556666667777888888854

CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=82.97  E-value=3.7  Score=33.74  Aligned_cols=74  Identities=11%  Similarity=0.022  Sum_probs=57.5

Q ss_pred             ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHH-HHHHHHHHHHHHhc
Q 009568           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ-LQFEAAWALTNIAS  147 (532)
Q Consensus        74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~-~~~~a~~~L~~l~~  147 (532)
                      +.+..+.+.|+++++.++..|+..|-.++.....+....+....++..|+.++....... ++..++..+...+.
T Consensus        37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~  111 (133)
T smart00288       37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD  111 (133)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence            467788888899999999999999999888643445566667888999999888755333 88888877777654

Unpublished observations. Domain of unknown function.

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=82.84  E-value=27  Score=30.33  Aligned_cols=72  Identities=17%  Similarity=0.201  Sum_probs=54.0

Q ss_pred             CchHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009568          328 GALPYLLGLLTHSHKKSIKKEACWTISNITAG-NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSG  401 (532)
Q Consensus       328 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~  401 (532)
                      ..+|.+..-|... +...+--|...+..+... ..+.+-.++.. ++..|-..|.+.++++...++.+|..++..
T Consensus        38 ~~Lpif~dGL~Et-~~Py~flA~~g~~dll~~~~~~kilPvlPq-LI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~  110 (183)
T PF10274_consen   38 HYLPIFFDGLRET-EHPYRFLARQGIKDLLERGGGEKILPVLPQ-LIIPLKRALNTRDPEVFCATLKALQQLVTS  110 (183)
T ss_pred             hHHHHHHhhhhcc-CccHHHHHHHHHHHHHHhcchhHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence            5677788878777 555666777777766653 55656566543 778888899999999999999999999553

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=82.64  E-value=5.9  Score=32.57  Aligned_cols=74  Identities=16%  Similarity=0.096  Sum_probs=58.1

Q ss_pred             ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCC--CCHHHHHHHHHHHHHHhc
Q 009568           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE--DYPQLQFEAAWALTNIAS  147 (532)
Q Consensus        74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~--~~~~~~~~a~~~L~~l~~  147 (532)
                      +.+..+.+.|+++++.++..|+..|-.++.....+....+.....+..|+.++...  .++.++..++..+...+.
T Consensus        37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~  112 (133)
T cd03561          37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE  112 (133)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence            46788888999999999999999999998865333455555657888899999763  337899999988888765

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=82.60  E-value=16  Score=36.73  Aligned_cols=144  Identities=10%  Similarity=0.085  Sum_probs=80.7

Q ss_pred             CchHHHHHHhcCCC---chhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCH
Q 009568          328 GALPYLLGLLTHSH---KKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTH  404 (532)
Q Consensus       328 ~~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~  404 (532)
                      .+-..|..+|....   ++.++...+.+|.-|-..+.-.     -..++..++.++..++...|.-+..-+...+.+.+.
T Consensus        16 ~FP~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk~~i~-----~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~   90 (616)
T KOG2229|consen   16 NFPSELKDLLRTNHTVLPPELREKIVKALILLRNKNLIV-----AEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINK   90 (616)
T ss_pred             hhhHHHHHHHHhccccCCHHHHHHHHHHHHHHhccCcCC-----HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHh
Confidence            34445666775432   5788888888877665432111     122566778888888877776555444333322111


Q ss_pred             HHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHH
Q 009568          405 EQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNE  484 (532)
Q Consensus       405 ~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~  484 (532)
                      ....-=+...+-..+..+|+.+|+.--..++..+..+-+.+...                  +...+..+-.-.-|.++.
T Consensus        91 ~~kn~klnkslq~~~fsml~~~d~~~ak~a~~~~~eL~kr~iW~------------------d~~tV~i~~~acf~~~~k  152 (616)
T KOG2229|consen   91 KHKNDKLNKSLQAFMFSMLDQSDSTAAKMALDTMIELYKRNIWN------------------DSKTVNIITTACFSKVPK  152 (616)
T ss_pred             hcccchHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcccc------------------cchhHHHHHHHHhccCcH
Confidence            11111011123346677899999876667777777666554332                  122233344447788888


Q ss_pred             HHHHHHHHHH
Q 009568          485 IYEKAVKILE  494 (532)
Q Consensus       485 v~~~a~~il~  494 (532)
                      |.-.+...+-
T Consensus       153 i~vs~l~FfL  162 (616)
T KOG2229|consen  153 ILVSGLRFFL  162 (616)
T ss_pred             HHHhhhHHhc
Confidence            8776665433

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=81.96  E-value=4.7  Score=33.34  Aligned_cols=74  Identities=9%  Similarity=0.006  Sum_probs=58.6

Q ss_pred             ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcC-----CCCHHHHHHHHHHHHHHhc
Q 009568           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR-----EDYPQLQFEAAWALTNIAS  147 (532)
Q Consensus        74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~-----~~~~~~~~~a~~~L~~l~~  147 (532)
                      +.+..+.+.|+++++.+++.|+..|-.++..-.......+...+++..|++++..     ..++.++..++..+...+.
T Consensus        38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (139)
T cd03567          38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL  116 (139)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            4678888899999999999999999999886544556667788899999999963     1237899988888777664

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=81.95  E-value=17  Score=34.32  Aligned_cols=116  Identities=19%  Similarity=0.244  Sum_probs=74.6

Q ss_pred             CchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHH-HHHHHcCCHHHHHHH----Hh--------cCchhHHHHHHHH
Q 009568          328 GALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI-QAVIDAGLVGPLVNL----LQ--------NAEFDIKKEAAWA  394 (532)
Q Consensus       328 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~-~~l~~~~~i~~L~~l----l~--------~~~~~v~~~a~~a  394 (532)
                      -++|.++.++.+. ++.+|..+|.+|..+....+... ..+...|+.+.+.+.    +.        .....+-..|.-|
T Consensus       119 liiP~iL~llDD~-~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~  197 (282)
T PF10521_consen  119 LIIPPILNLLDDY-SPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA  197 (282)
T ss_pred             HHHhhHHHHhcCC-CHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence            4689999999998 99999999999999987544322 224566665444443    33        2345677777777


Q ss_pred             HHHhhcC-------CCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 009568          395 ISNATSG-------GTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV  444 (532)
Q Consensus       395 L~nl~~~-------~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~  444 (532)
                      |..++..       ........++..|++..+...-+.+.+.++...++.+..++..
T Consensus       198 L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~  254 (282)
T PF10521_consen  198 LLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDE  254 (282)
T ss_pred             HHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHH
Confidence            7777431       1223334444555555554444445688888888877777654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	532
4b8j_A	528	Rimp_alpha1a Length = 528		0.0
2yns_A	490	Rimp_alpha_b54nls Length = 490		0.0
1wa5_B	530	Crystal Structure Of The Exportin Cse1p Complexed W		1e-144
3tj3_A	447	Structure Of Importin A5 Bound To The N-Terminus Of		1e-136
2jdq_A	450	C-Terminal Domain Of Influenza A Virus Polymerase P		1e-136
2c1t_A	454	Structure Of The Kap60p:nup2 Complex Length = 454		1e-135
1un0_A	443	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-134
1bk5_A	422	Karyopherin Alpha From Saccharomyces Cerevisiae Len		1e-134
1bk6_A	422	Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng		1e-133
1ee4_A	423	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-133
1ee5_A	424	Yeast Karyopherin (Importin) Alpha In A Complex Wit		1e-133
3tpo_A	529	Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP		1e-125
3rz9_A	510	Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt		1e-119
4ba3_A	496	Mimp_alphadibb_a89nls Length = 496		1e-119
3ukw_B	510	Mouse Importin Alpha: Bimax1 Peptide Complex Length		1e-119
1q1s_C	466	Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid		1e-119
1ejl_I	460	Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti		1e-119
4htv_A	509	Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex		1e-118
3fex_C	467	Crystal Structure Of The Cbc-Importin Alpha Complex		1e-117
2ynr_A	461	Mimp_alphadibb_b54nls Length = 461		1e-117
1ial_A	453	Importin Alpha, Mouse Length = 453		1e-117
1y2a_C	428	Structure Of Mammalian Importin Bound To The Non-Cl		1e-117
3l3q_A	427	Mouse Importin Alpha-Peptm Nls Peptide Complex Leng		1e-117
3btr_C	427	Ar-Nls:importin-Alpha Complex Length = 427		1e-117
3ve6_A	426	Crystal Structure Analysis Of Venezuelan Equine Enc		1e-117
2c1m_A	424	Nup50:importin-Alpha Complex Length = 424		1e-117
3tpm_A	422	Crystal Structure Of Mal Rpel Domain In Complex Wit		1e-117
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		1e-40
4db9_A	210	Designed Armadillo Repeat Protein (Yiiim3aiii) Leng		8e-34
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		1e-32
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		5e-32
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		3e-30
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		2e-28
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		7e-24
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		5e-23
2z6g_A	780	Crystal Structure Of A Full-Length Zebrafish Beta-C		2e-04
2z6h_A	644	Crystal Structure Of Beta-Catenin Armadillo Repeat		2e-04
2gl7_A	550	Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX		4e-04
3qhe_A	337	Crystal Structure Of The Complex Between The Armadi		4e-04
3t7u_A	378	A New Crytal Structure Of Apc-Arm Length = 378		4e-04
3nmz_A	458	Crytal Structure Of Apc Complexed With Asef Length		4e-04
3ouw_A	540	Structure Of Beta-Catenin With Lef-1 Length = 540		5e-04
1i7x_A	538	Beta-CateninE-Cadherin Complex Length = 538		5e-04
1jpw_A	540	Crystal Structure Of A Human Tcf-4 BETA-Catenin Com		5e-04
3nmx_A	354	Crystal Structure Of Apc Complexed With Asef Length		6e-04
3tx7_A	527	Crystal Structure Of Lrh-1BETA-Catenin Complex Leng		6e-04
4djs_A	518	Structure Of Beta-Catenin In Complex With A Stapled		6e-04
1g3j_A	532	Crystal Structure Of The Xtcf3-CbdBETA-Catenin Arma		6e-04
2bct_A	516	The Armadillo Repeat Region From Murine Beta-Cateni		6e-04
1jdh_A	529	Crystal Structure Of Beta-Catenin And Htcf-4 Length		6e-04
1qz7_A	533	Beta-Catenin Binding Domain Of Axin In Complex With		6e-04
1luj_A	514	Crystal Structure Of The Beta-CateninICAT COMPLEX L		6e-04
1t08_A	519	Crystal Structure Of Beta-CateninICAT HELICAL Domai		7e-04

>pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528

Iteration: 1
 Score =  871 bits (2251), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/507 (83%), Positives = 463/507 (91%), Gaps = 4/507 (0%)
Query: 1   MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFXX 60
           MSLRP+ R EVRRNRYKVAVDA+EGRRRREDNMVEIRK++REESLLKKRREGLQ+Q    
Sbjct: 3   MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVP 62
Query: 61  XXXXSNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 120
               + ++   KLESLPAM+ GV+SDD++LQLEATTQFRKLLSIERSPPIEEVIQSGVVP
Sbjct: 63  ASAATGVD--KKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 120
Query: 121 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQA 180
           RFV+FL RED+PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL S SDDVREQA
Sbjct: 121 RFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQA 180
Query: 181 VWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD 240
           VWALGNVAGDSP+CRDLVL+ GAL+PLLAQLNE  KLSMLRNATWTLSNFCRGKPQP F+
Sbjct: 181 VWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFE 240
Query: 241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP 300
           Q RPALPALA+L+HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSP
Sbjct: 241 QTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSP 300
Query: 301 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360
           SVLIPALRTVGNIVTGDD QTQCII + ALP LL LLT + KKSIKKEACWTISNITAGN
Sbjct: 301 SVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGN 360
Query: 361 RDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLC 420
           +DQIQAVI+AG++GPLVNLLQ AEFDIKKEAAWAISNATSGG+H+QIKYLV EGCIKPLC
Sbjct: 361 KDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLC 420
Query: 421 DLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSH 480
           DL +CPD RIVTVCLEGLENILKVGE +K +  A  DVN ++Q+++EAEGLEKIENLQSH
Sbjct: 421 DLLICPDIRIVTVCLEGLENILKVGETDKTL--AAGDVNVFSQMIDEAEGLEKIENLQSH 478
Query: 481 DNNEIYEKAVKILETYWLEEDDETIAA 507
           DNNEIYEKAVKILE YW++E+D+T+ A
Sbjct: 479 DNNEIYEKAVKILEAYWMDEEDDTMGA 505

>pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490

Iteration: 1
 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/433 (85%), Positives = 403/433 (93%), Gaps = 2/433 (0%)
Query: 75  SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
           SLPAM+ GV+SDD++LQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFV+FL RED+PQL
Sbjct: 37  SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQL 96
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
           QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL S SDDVREQAVWALGNVAGDSP+C
Sbjct: 97  QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKC 156
Query: 195 RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH 254
           RDLVL+ GAL+PLLAQLNE  KLSMLRNATWTLSNFCRGKPQP F+Q RPALPALA+L+H
Sbjct: 157 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIH 216
Query: 255 SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV 314
           SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSVLIPALRTVGNIV
Sbjct: 217 SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIV 276
Query: 315 TGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVG 374
           TGDD QTQCII + ALP LL LLT + KKSIKKEACWTISNITAGN+DQIQAVI+AG++G
Sbjct: 277 TGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIG 336
Query: 375 PLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVC 434
           PLVNLLQ AEFDIKKEAAWAISNATSGG+H+QIKYLV EGCIKPLCDL +CPD RIVTVC
Sbjct: 337 PLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVC 396
Query: 435 LEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILE 494
           LEGLENILKVGE +K +  A  DVN ++Q+++EAEGLEKIENLQSHDNNEIYEKAVKILE
Sbjct: 397 LEGLENILKVGETDKTL--AAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILE 454
Query: 495 TYWLEEDDETIAA 507
            YW++E+D+T+ A
Sbjct: 455 AYWMDEEDDTMGA 467

>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530

Iteration: 1
 Score =  508 bits (1307), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 284/512 (55%), Positives = 355/512 (69%), Gaps = 20/512 (3%)
Query: 10  EVRRNRYKVA--VDADEGRRRREDNMVEIRKNKREESLLKKRR-----EGLQSQQFXXXX 62
           E RR  +K      ADE RRRR+   VE+RK KR+E+L K+R      +G  S +     
Sbjct: 15  EYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESS 74
Query: 63  XXSNLNLQTKLES-LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPR 121
             ++    ++L+  LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR
Sbjct: 75  VSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPR 134
Query: 122 FVEFLMREDYPQ-LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQA 180
            VEF MRE+ P+ LQ EAAWALTNIASGTS  TKVV+D  AVP+F++LL + S +V+EQA
Sbjct: 135 LVEF-MRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQA 193
Query: 181 VWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG-KPQPPF 239
           +WALGNVAGDS   RD VL   A+ P+L   N   K S++R ATWTLSN CRG KPQP +
Sbjct: 194 IWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDW 252
Query: 240 DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS 299
             V  ALP LA+L++S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S
Sbjct: 253 SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES 312
Query: 300 PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG 359
             V  PALR VGNIVTG+D QTQ +I  G LP  L LL  S K++IKKEACWTISNITAG
Sbjct: 313 TLVQTPALRAVGNIVTGNDLQTQVVINAGVLP-ALRLLLSSPKENIKKEACWTISNITAG 371
Query: 360 NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTH--EQIKYLVREGCIK 417
           N +QIQAVIDA L+ PLV LL+ AE+  KKEA WAISNA+SGG    + I+YLV +GCIK
Sbjct: 372 NTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIK 431
Query: 418 PLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENL 477
           PLCDL    D RI+ V L+ LENILK+GEA+K       ++N+ A  +E+A G+EKI N 
Sbjct: 432 PLCDLLEIADNRIIEVTLDALENILKMGEADKE--ARGLNINENADFIEKAGGMEKIFNC 489
Query: 478 QSHDNNEIYEKAVKILETYWLEED---DETIA 506
           Q ++N++IYEKA KI+ETY+ EE+   DET+A
Sbjct: 490 QQNENDKIYEKAYKIIETYFGEEEDAVDETMA 521

>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50 Length = 447

Iteration: 1
 Score =  482 bits (1241), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 260/429 (60%), Positives = 313/429 (72%), Gaps = 7/429 (1%)
Query: 79  MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQS-GVVPRFVEFLMREDYPQLQFE 137
           M+  ++S     QL AT +FRKLLS E +PPI+EVI + GVV RFVEFL R++   LQFE
Sbjct: 22  MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 81
Query: 138 AAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 197
           +AW LTNIASG S  T++VI  GAVPIF++LL+S  +DV+EQAVWALGN+AGDS  CRD 
Sbjct: 82  SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 141
Query: 198 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP-FDQVRPALPALAQLVHSN 256
           VL    L PLL   +++ +L+M RNA W LSN CRGK  PP F +V P L  L+ L+  +
Sbjct: 142 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 201
Query: 257 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 316
           D +VL DACWALSYLSDG NDKIQAVI+AGVC RLVELL H    V+ PALR VGNIVTG
Sbjct: 202 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 261
Query: 317 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 376
           DD QTQ I+   AL   L  L  S K+SIKKEACWTISNITAGNR QIQ VIDA +   L
Sbjct: 262 DDIQTQVILNCSAL-QSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 320
Query: 377 VNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLE 436
           +++LQ AEF  +KEAAWAI+NATSGG+ EQIKYLV  GCIKPLCDL    D +IV V L 
Sbjct: 321 ISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALN 380
Query: 437 GLENILKVGEAE-KNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILET 495
           GLENIL++GE E K  GT    +N Y  L+EEA GL+KIE LQSH+N EIY+KA  ++E 
Sbjct: 381 GLENILRLGEQEAKRNGTG---INPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH 437
Query: 496 YWLEEDDET 504
           Y+  ED+++
Sbjct: 438 YFGTEDEDS 446

>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2 Subunit In Complex With Human Importin Alpha5 Length = 450

Iteration: 1
 Score =  482 bits (1240), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 260/429 (60%), Positives = 313/429 (72%), Gaps = 7/429 (1%)
Query: 79  MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQS-GVVPRFVEFLMREDYPQLQFE 137
           M+  ++S     QL AT +FRKLLS E +PPI+EVI + GVV RFVEFL R++   LQFE
Sbjct: 25  MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 84
Query: 138 AAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 197
           +AW LTNIASG S  T++VI  GAVPIF++LL+S  +DV+EQAVWALGN+AGDS  CRD 
Sbjct: 85  SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144
Query: 198 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP-FDQVRPALPALAQLVHSN 256
           VL    L PLL   +++ +L+M RNA W LSN CRGK  PP F +V P L  L+ L+  +
Sbjct: 145 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 204
Query: 257 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 316
           D +VL DACWALSYLSDG NDKIQAVI+AGVC RLVELL H    V+ PALR VGNIVTG
Sbjct: 205 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264
Query: 317 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 376
           DD QTQ I+   AL   L  L  S K+SIKKEACWTISNITAGNR QIQ VIDA +   L
Sbjct: 265 DDIQTQVILNCSAL-QSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 323
Query: 377 VNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLE 436
           +++LQ AEF  +KEAAWAI+NATSGG+ EQIKYLV  GCIKPLCDL    D +IV V L 
Sbjct: 324 ISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALN 383
Query: 437 GLENILKVGEAE-KNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILET 495
           GLENIL++GE E K  GT    +N Y  L+EEA GL+KIE LQSH+N EIY+KA  ++E 
Sbjct: 384 GLENILRLGEQEAKRNGTG---INPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH 440
Query: 496 YWLEEDDET 504
           Y+  ED+++
Sbjct: 441 YFGTEDEDS 449

>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454

Iteration: 1
 Score =  477 bits (1227), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 266/463 (57%), Positives = 325/463 (70%), Gaps = 17/463 (3%)
Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ-L 134
           LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR VEF MRE+ P+ L
Sbjct: 2   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 60
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
           Q EAAWALTNIASGTS  TKVV+D  AVP+F++LL + S +V+EQA+WALGNVAGDS   
Sbjct: 61  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 195 RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG-KPQPPFDQVRPALPALAQLV 253
           RD VL   A+ P+L   N   K S++R ATWTLSN CRG KPQP +  V  ALP LA+L+
Sbjct: 121 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 179
Query: 254 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 313
           +S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGNI
Sbjct: 180 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 239
Query: 314 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLV 373
           VTG+D QTQ +I  G LP  L LL  S K++IKKEACWTISNITAGN +QIQAVIDA L+
Sbjct: 240 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 298
Query: 374 GPLVNLLQNAEFDIKKEAAWAISNATSGGTH--EQIKYLVREGCIKPLCDLFVCPDPRIV 431
            PLV LL+ AE   KKEA WAISNA+SGG    + I+YLV +GCIKPLCDL    D RI+
Sbjct: 299 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 358
Query: 432 TVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVK 491
            V L+ LENILK+GEA+K       ++N+ A  +E+A G+EKI N Q ++N++IYEKA K
Sbjct: 359 EVTLDALENILKMGEADKE--ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 416
Query: 492 ILETYWLEED---DETIAAGDGPQPGFPYAGNEVQVPSGGFNF 531
           I+ETY+ EE+   DET+A  +     F +  N  Q     FNF
Sbjct: 417 IIETYFGEEEDAVDETMAPQNAGNT-FGFGSNVNQ----QFNF 454

>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443

Iteration: 1
 Score =  476 bits (1224), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 260/438 (59%), Positives = 317/438 (72%), Gaps = 12/438 (2%)
Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ-L 134
           LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR VEF MRE+ P+ L
Sbjct: 2   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 60
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
           Q EAAWALTNIASGTS  TKVV+D  AVP+F++LL + S +V+EQA+WALGNVAGDS   
Sbjct: 61  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 195 RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG-KPQPPFDQVRPALPALAQLV 253
           RD VL   A+ P+L   N   K S++R ATWTLSN CRG KPQP +  V  ALP LA+L+
Sbjct: 121 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 179
Query: 254 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 313
           +S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGNI
Sbjct: 180 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 239
Query: 314 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLV 373
           VTG+D QTQ +I  G LP  L LL  S K++IKKEACWTISNITAGN +QIQAVIDA L+
Sbjct: 240 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 298
Query: 374 GPLVNLLQNAEFDIKKEAAWAISNATSGGTH--EQIKYLVREGCIKPLCDLFVCPDPRIV 431
            PLV LL+ AE   KKEA WAISNA+SGG    + I+YLV +GCIKPLCDL    D RI+
Sbjct: 299 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 358
Query: 432 TVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVK 491
            V L+ LENILK+GEA+K       ++N+ A  +E+A G+EKI N Q ++N++IYEKA K
Sbjct: 359 EVTLDALENILKMGEADKE--ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 416
Query: 492 ILETYWLEED---DETIA 506
           I+ETY+ EE+   DET+A
Sbjct: 417 IIETYFGEEEDAVDETMA 434

>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422

Iteration: 1
 Score =  473 bits (1218), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 254/426 (59%), Positives = 310/426 (72%), Gaps = 9/426 (2%)
Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ-L 134
           LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR VEF MRE+ P+ L
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 59
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
           Q EAAWALTNIASGTS  TKVV+D  AVP+F++LL + S +V+EQA+WALGNVAGDS   
Sbjct: 60  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 195 RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG-KPQPPFDQVRPALPALAQLV 253
           RD VL   A+ P+L   N   K S++R ATWTLSN CRG KPQP +  V  ALP LA+L+
Sbjct: 120 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 178
Query: 254 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 313
           +S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGNI
Sbjct: 179 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 238
Query: 314 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLV 373
           VTG+D QTQ +I  G LP  L LL  S K++IKKEACWTISNITAGN +QIQAVIDA L+
Sbjct: 239 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 297
Query: 374 GPLVNLLQNAEFDIKKEAAWAISNATSGGTH--EQIKYLVREGCIKPLCDLFVCPDPRIV 431
            PLV LL+ AE+  KKEA WAISNA+SGG    + I+YLV +GCIKPLCDL    D RI+
Sbjct: 298 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 357
Query: 432 TVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVK 491
            V L+ LENILK+GEA+K       ++N+ A  +E+A G+EKI N Q ++N++IYEKA K
Sbjct: 358 EVTLDALENILKMGEADKE--ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 415
Query: 492 ILETYW 497
           I+ETY+
Sbjct: 416 IIETYF 421

>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422

Iteration: 1
 Score =  473 bits (1216), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 253/426 (59%), Positives = 310/426 (72%), Gaps = 9/426 (2%)
Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ-L 134
           LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR VEF MRE+ P+ L
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 59
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
           Q EAAWALTNIASGTS  TKVV+D  AVP+F++LL + S +V+EQA+WALGNVAGDS   
Sbjct: 60  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 195 RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG-KPQPPFDQVRPALPALAQLV 253
           RD VL   A+ P+L   N   K S++R ATWTLSN CRG KPQP +  V  ALP LA+L+
Sbjct: 120 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 178
Query: 254 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 313
           +S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGNI
Sbjct: 179 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 238
Query: 314 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLV 373
           VTG+D QTQ +I  G LP  L LL  S K++IKKEACWTISNITAGN +QIQAVIDA L+
Sbjct: 239 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 297
Query: 374 GPLVNLLQNAEFDIKKEAAWAISNATSGGTH--EQIKYLVREGCIKPLCDLFVCPDPRIV 431
            PLV LL+ AE+  KKEA WAISNA+SGG    + I+YLV +GCIKPLCDL    D RI+
Sbjct: 298 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 357
Query: 432 TVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVK 491
            V L+ LENI+K+GEA+K       ++N+ A  +E+A G+EKI N Q ++N++IYEKA K
Sbjct: 358 EVTLDALENIIKMGEADKE--ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 415
Query: 492 ILETYW 497
           I+ETY+
Sbjct: 416 IIETYF 421

>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423

Iteration: 1
 Score =  471 bits (1213), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 254/428 (59%), Positives = 310/428 (72%), Gaps = 9/428 (2%)
Query: 74  ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ 133
           + LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR VEF MRE+ P+
Sbjct: 1   QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPE 59
Query: 134 -LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP 192
            LQ EAAWALTNIASGTS  TKVV+D  AVP+F++LL + S +V+EQA+WALGNVAGDS 
Sbjct: 60  MLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDST 119
Query: 193 RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG-KPQPPFDQVRPALPALAQ 251
             RD VL   A+ P+L   N   K S++R ATWTLSN CRG KPQP +  V  ALP LA+
Sbjct: 120 DYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAK 178
Query: 252 LVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVG 311
           L++S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VG
Sbjct: 179 LIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 238
Query: 312 NIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAG 371
           NIVTG+D QTQ +I  G LP  L LL  S K++IKKEACWTISNITAGN +QIQAVIDA 
Sbjct: 239 NIVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDAN 297
Query: 372 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTH--EQIKYLVREGCIKPLCDLFVCPDPR 429
           L+ PLV LL+ AE   KKEA WAISNA+SGG    + I+YLV +GCIKPLCDL    D R
Sbjct: 298 LIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNR 357
Query: 430 IVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKA 489
           I+ V L+ LENILK+GEA+K       ++N+ A  +E+A G+EKI N Q ++N++IYEKA
Sbjct: 358 IIEVTLDALENILKMGEADKE--ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKA 415
Query: 490 VKILETYW 497
            KI+ETY+
Sbjct: 416 YKIIETYF 423

>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424

Iteration: 1
 Score =  471 bits (1213), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 254/428 (59%), Positives = 310/428 (72%), Gaps = 9/428 (2%)
Query: 74  ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ 133
           + LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR VEF MRE+ P+
Sbjct: 1   QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPE 59
Query: 134 -LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP 192
            LQ EAAWALTNIASGTS  TKVV+D  AVP+F++LL + S +V+EQA+WALGNVAGDS 
Sbjct: 60  MLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDST 119
Query: 193 RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG-KPQPPFDQVRPALPALAQ 251
             RD VL   A+ P+L   N   K S++R ATWTLSN CRG KPQP +  V  ALP LA+
Sbjct: 120 DYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAK 178
Query: 252 LVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVG 311
           L++S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VG
Sbjct: 179 LIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 238
Query: 312 NIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAG 371
           NIVTG+D QTQ +I  G LP  L LL  S K++IKKEACWTISNITAGN +QIQAVIDA 
Sbjct: 239 NIVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDAN 297
Query: 372 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTH--EQIKYLVREGCIKPLCDLFVCPDPR 429
           L+ PLV LL+ AE   KKEA WAISNA+SGG    + I+YLV +GCIKPLCDL    D R
Sbjct: 298 LIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNR 357
Query: 430 IVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKA 489
           I+ V L+ LENILK+GEA+K       ++N+ A  +E+A G+EKI N Q ++N++IYEKA
Sbjct: 358 IIEVTLDALENILKMGEADKE--ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKA 415
Query: 490 VKILETYW 497
            KI+ETY+
Sbjct: 416 YKIIETYF 423

>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529

Iteration: 1
 Score =  443 bits (1140), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 253/544 (46%), Positives = 340/544 (62%), Gaps = 28/544 (5%)
Query: 1   MSLRPNAR-AEVRRNRYK-VAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQF 58
           MS   NA     R NR+K    D+ E RRRR +  VE+RK K++E +LK+R         
Sbjct: 1   MSTNENANLPAARLNRFKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDA 60
Query: 59  XXXXXXSNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGV 118
                 +  N  T   S+  +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G+
Sbjct: 61  TSPLQENRNNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGL 120
Query: 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVRE 178
           +P+FV FL + D   +QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP   + E
Sbjct: 121 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 180
Query: 179 QAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK 234
           QAVWALGN+AG     RDLV+  GA+ PLLA L            LRN TWTLSN CR K
Sbjct: 181 QAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 240
Query: 235 -PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE 293
            P PP D V   LP L +L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+
Sbjct: 241 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 300
Query: 294 LLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI 353
           LLG     ++ PALR +GNIVTG D QTQ +I  GAL     LLT+  K +I+KEA WT+
Sbjct: 301 LLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTM 359
Query: 354 SNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVRE 413
           SNITAG +DQIQ V++ GLV  LV +L  A+F  +K AAWAI+N TSGGT EQI YLV  
Sbjct: 360 SNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHC 419
Query: 414 GCIKPLCDLFVCPDPRIVTVCLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAE 469
           G I+PL +L    D +I+ V L+ + NI     K+GE EK            + ++EE  
Sbjct: 420 GIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEK-----------LSIMIEECG 468
Query: 470 GLEKIENLQSHDNNEIYEKAVKILETYW-LEEDDETIAAGDGPQPGFPYAGNEVQVPS-G 527
           GL+KIE LQ H+N  +Y+ ++ ++E Y+ +EE+++     +    GF +   +VQ  + G
Sbjct: 469 GLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETTSEGFAF---QVQDGAPG 525
Query: 528 GFNF 531
            FNF
Sbjct: 526 TFNF 529

>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510

Iteration: 1
 Score =  425 bits (1092), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/468 (49%), Positives = 308/468 (65%), Gaps = 26/468 (5%)
Query: 75  SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
           S+  +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +
Sbjct: 58  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
           QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AGD    
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
           RDLV+  GA+ PLLA L            LRN TWTLSN CR K P PP D V   LP L
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 237
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
            +L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG     ++ PALR 
Sbjct: 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID 369
           +GNIVTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ V++
Sbjct: 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVN 356
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPR 429
            GLV  LV +L  A+F  +KEAAWAI+N TSGGT EQI YLV  G I+PL +L    D +
Sbjct: 357 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 416
Query: 430 IVTVCLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEI 485
           I+ V L+ + NI     K+GE EK            + ++EE  GL+KIE LQ H+N  +
Sbjct: 417 IIQVILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESV 465
Query: 486 YEKAVKILETYW-LEEDDETIAAGDGPQPGFPYAGNEVQVPS-GGFNF 531
           Y+ ++ ++E Y+ +EE+++     +    GF +   +VQ  + G FNF
Sbjct: 466 YKASLNLIEKYFSVEEEEDQNVVPETTSEGFAF---QVQDGAPGTFNF 510

>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496

Iteration: 1
 Score =  425 bits (1092), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/468 (49%), Positives = 308/468 (65%), Gaps = 26/468 (5%)
Query: 75  SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
           S+  +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +
Sbjct: 44  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 103
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
           QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AGD    
Sbjct: 104 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 163
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
           RDLV+  GA+ PLLA L            LRN TWTLSN CR K P PP D V   LP L
Sbjct: 164 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 223
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
            +L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG     ++ PALR 
Sbjct: 224 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 283
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID 369
           +GNIVTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ V++
Sbjct: 284 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVN 342
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPR 429
            GLV  LV +L  A+F  +KEAAWAI+N TSGGT EQI YLV  G I+PL +L    D +
Sbjct: 343 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 402
Query: 430 IVTVCLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEI 485
           I+ V L+ + NI     K+GE EK            + ++EE  GL+KIE LQ H+N  +
Sbjct: 403 IIQVILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESV 451
Query: 486 YEKAVKILETYW-LEEDDETIAAGDGPQPGFPYAGNEVQVPS-GGFNF 531
           Y+ ++ ++E Y+ +EE+++     +    GF +   +VQ  + G FNF
Sbjct: 452 YKASLNLIEKYFSVEEEEDQNVVPETTSEGFAF---QVQDGAPGTFNF 496

>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510

Iteration: 1
 Score =  424 bits (1090), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/468 (49%), Positives = 308/468 (65%), Gaps = 26/468 (5%)
Query: 75  SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
           S+  +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +
Sbjct: 58  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
           QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AGD    
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
           RDLV+  GA+ PLLA L            LRN TWTLSN CR K P PP D V   LP L
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 237
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
            +L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG     ++ PALR 
Sbjct: 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID 369
           +GNIVTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ V++
Sbjct: 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVN 356
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPR 429
            GLV  LV +L  A+F  +KEAAWAI+N TSGGT EQI YLV  G I+PL +L    D +
Sbjct: 357 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 416
Query: 430 IVTVCLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEI 485
           I+ V L+ + NI     K+GE EK            + ++EE  GL+KIE LQ H+N  +
Sbjct: 417 IIQVILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESV 465
Query: 486 YEKAVKILETYW-LEEDDETIAAGDGPQPGFPYAGNEVQVPS-GGFNF 531
           Y+ ++ ++E Y+ +EE+++     +    GF +   +VQ  + G FNF
Sbjct: 466 YKASLNLIEKYFSVEEEEDQNVVPETTSEGFAF---QVQDGAPGTFNF 510

>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466

Iteration: 1
 Score =  424 bits (1090), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/468 (49%), Positives = 308/468 (65%), Gaps = 26/468 (5%)
Query: 75  SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
           S+  +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +
Sbjct: 14  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 73
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
           QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AGD    
Sbjct: 74  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 133
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
           RDLV+  GA+ PLLA L            LRN TWTLSN CR K P PP D V   LP L
Sbjct: 134 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 193
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
            +L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG     ++ PALR 
Sbjct: 194 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 253
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID 369
           +GNIVTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ V++
Sbjct: 254 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVN 312
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPR 429
            GLV  LV +L  A+F  +KEAAWAI+N TSGGT EQI YLV  G I+PL +L    D +
Sbjct: 313 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 372
Query: 430 IVTVCLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEI 485
           I+ V L+ + NI     K+GE EK            + ++EE  GL+KIE LQ H+N  +
Sbjct: 373 IIQVILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESV 421
Query: 486 YEKAVKILETYW-LEEDDETIAAGDGPQPGFPYAGNEVQVPS-GGFNF 531
           Y+ ++ ++E Y+ +EE+++     +    GF +   +VQ  + G FNF
Sbjct: 422 YKASLNLIEKYFSVEEEEDQNVVPETTSEGFAF---QVQDGAPGTFNF 466

>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460

Iteration: 1
 Score =  424 bits (1089), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/468 (49%), Positives = 308/468 (65%), Gaps = 26/468 (5%)
Query: 75  SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
           S+  +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +
Sbjct: 8   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 67
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
           QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AGD    
Sbjct: 68  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 127
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
           RDLV+  GA+ PLLA L            LRN TWTLSN CR K P PP D V   LP L
Sbjct: 128 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 187
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
            +L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG     ++ PALR 
Sbjct: 188 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 247
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID 369
           +GNIVTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ V++
Sbjct: 248 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVN 306
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPR 429
            GLV  LV +L  A+F  +KEAAWAI+N TSGGT EQI YLV  G I+PL +L    D +
Sbjct: 307 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 366
Query: 430 IVTVCLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEI 485
           I+ V L+ + NI     K+GE EK            + ++EE  GL+KIE LQ H+N  +
Sbjct: 367 IIQVILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESV 415
Query: 486 YEKAVKILETYW-LEEDDETIAAGDGPQPGFPYAGNEVQVPS-GGFNF 531
           Y+ ++ ++E Y+ +EE+++     +    GF +   +VQ  + G FNF
Sbjct: 416 YKASLNLIEKYFSVEEEEDQNVVPETTSEGFAF---QVQDGAPGTFNF 460

>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509

Iteration: 1
 Score =  422 bits (1085), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 224/453 (49%), Positives = 300/453 (66%), Gaps = 22/453 (4%)
Query: 75  SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
           S+  +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +
Sbjct: 58  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
           QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AGD    
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
           RDLV+  GA+ PLLA L            LRN TWTLSN CR K P PP D V   LP L
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 237
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
            +L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG     ++ PALR 
Sbjct: 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID 369
           +GNIVTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ V++
Sbjct: 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVN 356
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPR 429
            GLV  LV +L  A+F  +KEAAWAI+N TSGGT EQI YLV  G I+PL +L    D +
Sbjct: 357 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 416
Query: 430 IVTVCLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEI 485
           I+ V L+ + NI     K+GE EK            + ++EE  GL+KIE LQ H+N  +
Sbjct: 417 IIQVILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESV 465
Query: 486 YEKAVKILETYW-LEEDDETIAAGDGPQPGFPY 517
           Y+ ++ ++E Y+ +EE+++     +    GF +
Sbjct: 466 YKASLNLIEKYFSVEEEEDQNVVPETTSEGFAF 498

>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467

Iteration: 1
 Score =  419 bits (1078), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 230/471 (48%), Positives = 304/471 (64%), Gaps = 32/471 (6%)
Query: 75  SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
           S+  +V G+ S +   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL R D   +
Sbjct: 9   SVDDIVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPI 68
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
           QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AGD    
Sbjct: 69  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVF 128
Query: 195 RDLVLSQGALIPLLAQLNERAKLSM----LRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
           RDLV+  GA+ PLLA L      S+    LRN TWTLSN CR K P PP D V   LP L
Sbjct: 129 RDLVIKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTL 188
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
            +L+H +D EVL D CWA+SYL+DG N++I  V++ GV P+LV+LLG     ++ PALR 
Sbjct: 189 VRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRA 248
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID 369
           +GNIVTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ V++
Sbjct: 249 IGNIVTGTDEQTQVVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVN 307
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPR 429
            GLV  LV++L  A+F  +KEA WA++N TSGGT EQI YLV  G I+PL +L    D +
Sbjct: 308 HGLVPFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTK 367
Query: 430 IVTVCLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEI 485
           I+ V L+ + NI     K+GE EK            + ++EE  GL+KIE LQ+H+N  +
Sbjct: 368 IILVILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQNHENESV 416
Query: 486 YEKAVKILETYWL--EEDDETIAAGDGPQPGFPYAGNEVQVPSGG---FNF 531
           Y+ ++ ++E Y+   EE+D+ +       P     G   QV  G    FNF
Sbjct: 417 YKASLSLIEKYFSVEEEEDQNVV------PETTSEGYTFQVQDGAPGTFNF 461

>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461

Iteration: 1
 Score =  419 bits (1078), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/432 (50%), Positives = 290/432 (67%), Gaps = 21/432 (4%)
Query: 75  SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
           S+  +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +
Sbjct: 42  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 101
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
           QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AGD    
Sbjct: 102 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 161
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
           RDLV+  GA+ PLLA L            LRN TWTLSN CR K P PP D V   LP L
Sbjct: 162 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 221
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
            +L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG     ++ PALR 
Sbjct: 222 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 281
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID 369
           +GNIVTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ V++
Sbjct: 282 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVN 340
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPR 429
            GLV  LV +L  A+F  +KEAAWAI+N TSGGT EQI YLV  G I+PL +L    D +
Sbjct: 341 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 400
Query: 430 IVTVCLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEI 485
           I+ V L+ + NI     K+GE EK            + ++EE  GL+KIE LQ H+N  +
Sbjct: 401 IIQVILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESV 449
Query: 486 YEKAVKILETYW 497
           Y+ ++ ++E Y+
Sbjct: 450 YKASLNLIEKYF 461

>pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453

Iteration: 1
 Score =  419 bits (1077), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/432 (50%), Positives = 290/432 (67%), Gaps = 21/432 (4%)
Query: 75  SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
           S+  +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +
Sbjct: 34  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 93
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
           QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AGD    
Sbjct: 94  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 153
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
           RDLV+  GA+ PLLA L            LRN TWTLSN CR K P PP D V   LP L
Sbjct: 154 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 213
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
            +L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG     ++ PALR 
Sbjct: 214 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 273
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID 369
           +GNIVTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ V++
Sbjct: 274 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVN 332
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPR 429
            GLV  LV +L  A+F  +KEAAWAI+N TSGGT EQI YLV  G I+PL +L    D +
Sbjct: 333 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 392
Query: 430 IVTVCLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEI 485
           I+ V L+ + NI     K+GE EK            + ++EE  GL+KIE LQ H+N  +
Sbjct: 393 IIQVILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESV 441
Query: 486 YEKAVKILETYW 497
           Y+ ++ ++E Y+
Sbjct: 442 YKASLNLIEKYF 453

>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428

Iteration: 1
 Score =  419 bits (1076), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/432 (50%), Positives = 290/432 (67%), Gaps = 21/432 (4%)
Query: 75  SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
           S+  +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +
Sbjct: 8   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 67
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
           QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AGD    
Sbjct: 68  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 127
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
           RDLV+  GA+ PLLA L            LRN TWTLSN CR K P PP D V   LP L
Sbjct: 128 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 187
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
            +L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG     ++ PALR 
Sbjct: 188 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 247
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID 369
           +GNIVTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ V++
Sbjct: 248 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVN 306
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPR 429
            GLV  LV +L  A+F  +KEAAWAI+N TSGGT EQI YLV  G I+PL +L    D +
Sbjct: 307 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 366
Query: 430 IVTVCLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEI 485
           I+ V L+ + NI     K+GE EK            + ++EE  GL+KIE LQ H+N  +
Sbjct: 367 IIQVILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESV 415
Query: 486 YEKAVKILETYW 497
           Y+ ++ ++E Y+
Sbjct: 416 YKASLNLIEKYF 427

>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427

Iteration: 1
 Score =  418 bits (1075), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/432 (50%), Positives = 290/432 (67%), Gaps = 21/432 (4%)
Query: 75  SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
           S+  +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +
Sbjct: 7   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 66
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
           QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AGD    
Sbjct: 67  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 126
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
           RDLV+  GA+ PLLA L            LRN TWTLSN CR K P PP D V   LP L
Sbjct: 127 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 186
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
            +L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG     ++ PALR 
Sbjct: 187 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 246
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID 369
           +GNIVTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ V++
Sbjct: 247 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVN 305
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPR 429
            GLV  LV +L  A+F  +KEAAWAI+N TSGGT EQI YLV  G I+PL +L    D +
Sbjct: 306 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 365
Query: 430 IVTVCLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEI 485
           I+ V L+ + NI     K+GE EK            + ++EE  GL+KIE LQ H+N  +
Sbjct: 366 IIQVILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESV 414
Query: 486 YEKAVKILETYW 497
           Y+ ++ ++E Y+
Sbjct: 415 YKASLNLIEKYF 426

>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427

Iteration: 1
 Score =  418 bits (1075), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/432 (50%), Positives = 290/432 (67%), Gaps = 21/432 (4%)
Query: 75  SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
           S+  +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +
Sbjct: 8   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 67
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
           QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AGD    
Sbjct: 68  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 127
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
           RDLV+  GA+ PLLA L            LRN TWTLSN CR K P PP D V   LP L
Sbjct: 128 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 187
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
            +L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG     ++ PALR 
Sbjct: 188 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 247
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID 369
           +GNIVTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ V++
Sbjct: 248 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVN 306
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPR 429
            GLV  LV +L  A+F  +KEAAWAI+N TSGGT EQI YLV  G I+PL +L    D +
Sbjct: 307 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 366
Query: 430 IVTVCLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEI 485
           I+ V L+ + NI     K+GE EK            + ++EE  GL+KIE LQ H+N  +
Sbjct: 367 IIQVILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESV 415
Query: 486 YEKAVKILETYW 497
           Y+ ++ ++E Y+
Sbjct: 416 YKASLNLIEKYF 427

>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426

Iteration: 1
 Score =  418 bits (1075), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/432 (50%), Positives = 290/432 (67%), Gaps = 21/432 (4%)
Query: 75  SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
           S+  +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +
Sbjct: 7   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 66
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
           QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AGD    
Sbjct: 67  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 126
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
           RDLV+  GA+ PLLA L            LRN TWTLSN CR K P PP D V   LP L
Sbjct: 127 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 186
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
            +L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG     ++ PALR 
Sbjct: 187 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 246
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID 369
           +GNIVTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ V++
Sbjct: 247 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVN 305
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPR 429
            GLV  LV +L  A+F  +KEAAWAI+N TSGGT EQI YLV  G I+PL +L    D +
Sbjct: 306 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 365
Query: 430 IVTVCLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEI 485
           I+ V L+ + NI     K+GE EK            + ++EE  GL+KIE LQ H+N  +
Sbjct: 366 IIQVILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESV 414
Query: 486 YEKAVKILETYW 497
           Y+ ++ ++E Y+
Sbjct: 415 YKASLNLIEKYF 426

>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424

Iteration: 1
 Score =  418 bits (1075), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/432 (50%), Positives = 290/432 (67%), Gaps = 21/432 (4%)
Query: 75  SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
           S+  +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +
Sbjct: 3   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 62
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
           QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AGD    
Sbjct: 63  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 122
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
           RDLV+  GA+ PLLA L            LRN TWTLSN CR K P PP D V   LP L
Sbjct: 123 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 182
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
            +L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG     ++ PALR 
Sbjct: 183 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 242
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID 369
           +GNIVTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ V++
Sbjct: 243 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVN 301
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPR 429
            GLV  LV +L  A+F  +KEAAWAI+N TSGGT EQI YLV  G I+PL +L    D +
Sbjct: 302 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 361
Query: 430 IVTVCLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEI 485
           I+ V L+ + NI     K+GE EK            + ++EE  GL+KIE LQ H+N  +
Sbjct: 362 IIQVILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESV 410
Query: 486 YEKAVKILETYW 497
           Y+ ++ ++E Y+
Sbjct: 411 YKASLNLIEKYF 422

>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422

Iteration: 1
 Score =  418 bits (1074), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/432 (50%), Positives = 290/432 (67%), Gaps = 21/432 (4%)
Query: 75  SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
           S+  +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +
Sbjct: 3   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 62
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
           QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AGD    
Sbjct: 63  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 122
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
           RDLV+  GA+ PLLA L            LRN TWTLSN CR K P PP D V   LP L
Sbjct: 123 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 182
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
            +L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG     ++ PALR 
Sbjct: 183 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 242
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID 369
           +GNIVTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ V++
Sbjct: 243 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVN 301
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPR 429
            GLV  LV +L  A+F  +KEAAWAI+N TSGGT EQI YLV  G I+PL +L    D +
Sbjct: 302 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 361
Query: 430 IVTVCLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEI 485
           I+ V L+ + NI     K+GE EK            + ++EE  GL+KIE LQ H+N  +
Sbjct: 362 IIQVILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESV 410
Query: 486 YEKAVKILETYW 497
           Y+ ++ ++E Y+
Sbjct: 411 YKASLNLIEKYF 422

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score =  164 bits (414), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 104/250 (41%), Positives = 146/250 (58%), Gaps = 17/250 (6%)
Query: 246 LPALAQLVHSNDEEVLTDACWALS-YLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLI 304
           LP + Q ++S+D +    A    S  LSDG N++IQAVI+AG  P LV+LL  P+  +L 
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 305 PALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI 364
            AL  + NI +G + Q Q +I  GALP L+ LL+ S  + I +EA W +SNI +G  +QI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQI 131
Query: 365 QAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV 424
           QAVIDAG +  LV LL +    I +EA WA+SN  SGG +EQI+ ++  G +  L  L  
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLS 190
Query: 425 CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNE 484
            P+ +I+   L  L NI   G             N+  Q V+EA  LEK+E LQSH+N +
Sbjct: 191 SPNEQILQEALWALSNIASGG-------------NEQKQAVKEAGALEKLEQLQSHENEK 237
Query: 485 IYEKAVKILE 494
           I ++A + LE
Sbjct: 238 IQKEAQEALE 247

>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210

Iteration: 1
 Score =  141 bits (356), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 84/197 (42%), Positives = 117/197 (59%), Gaps = 4/197 (2%)
Query: 246 LPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIP 305
           LP + Q ++S D++ L  A   LS ++ G N++IQAVI+AG  P LV+LL  P+  +L  
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 306 ALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQ 365
           AL  + NI +G + Q Q +I  GALP L+ LL+ S  + I +EA W +SNI +G  +QIQ
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQ 132
Query: 366 AVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKP-LCDLFV 424
           AVIDAG +  LV LL +    I +EA WA+SN  SGG  +  K  V+E   +P L  L  
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ--KQAVKEAGAEPALEQLQS 190
Query: 425 CPDPRIVTVCLEGLENI 441
            P+ +I     E LE I
Sbjct: 191 SPNEKIQKEAQEALEKI 207

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score =  137 bits (346), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 81/196 (41%), Positives = 117/196 (59%), Gaps = 2/196 (1%)
Query: 246 LPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIP 305
           LP + Q ++S D++ L  A   LS ++ G N++IQAVI+AG  P LV+LL  P+  +L  
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 306 ALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQ 365
           AL  + NI +G + Q Q +I  GALP L+ LL+ S  + I +EA W +SNI +G  +QIQ
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQ 132
Query: 366 AVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC 425
           AVIDAG +  LV LL +    I +EA WA+SN  SGG +EQ + +   G ++ L  L   
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQSH 191
Query: 426 PDPRIVTVCLEGLENI 441
            + +I     E LE +
Sbjct: 192 ENEKIQKEAQEALEKL 207

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score =  135 bits (341), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 83/209 (39%), Positives = 117/209 (55%), Gaps = 15/209 (7%)
Query: 288 CPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKK 347
            P++V+ L  P    L  ALR +  I +G + Q Q +I  GALP L+ LL+ S  + I +
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 72
Query: 348 EACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQI 407
           EA W +SNI +G  +QIQAVIDAG +  LV LL +    I +EA WA+SN  SGG +EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 408 KYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEE 467
           + ++  G +  L  L   P+ +I+   L  L NI   G             N+  Q V+E
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-------------NEQKQAVKE 178
Query: 468 AEGLEKIENLQSHDNNEIYEKAVKILETY 496
           A  LEK+E LQSH+N +I ++A + LE  
Sbjct: 179 AGALEKLEQLQSHENEKIQKEAQEALEKL 207

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score =  129 bits (325), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/197 (41%), Positives = 116/197 (58%), Gaps = 4/197 (2%)
Query: 246 LPALAQLVHSNDEEVLTDACWALS-YLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLI 304
           LP + Q ++S+D +    A    S  LSDG N++IQAVI+AG  P LV+LL  P+  +L 
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 305 PALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI 364
            AL  + NI +G + Q Q +I  GALP L+ LL+ S  + I +EA W +SNI +G  +QI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQI 131
Query: 365 QAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV 424
           QAVIDAG +  LV LL +    I +EA WA+SN  SGG +EQ + +   G ++ L  L  
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQS 190
Query: 425 CPDPRIVTVCLEGLENI 441
             + +I     E LE +
Sbjct: 191 HENEKIQKEAQEALEKL 207

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score =  124 bits (310), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/207 (37%), Positives = 113/207 (54%), Gaps = 15/207 (7%)
Query: 288 CPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKK 347
            P++ + L        + A R    I++  + Q Q +I  GALP L+ LL+ S  + I +
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 72
Query: 348 EACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQI 407
           EA W +SNI +G  +QIQAVIDAG +  LV LL +    I +EA WA+SN  SGG +EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 408 KYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEE 467
           + ++  G +  L  L   P+ +I+   L  L NI   G             N+  Q V+E
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-------------NEQKQAVKE 178
Query: 468 AEGLEKIENLQSHDNNEIYEKAVKILE 494
           A  LEK+E LQSH+N +I ++A + LE
Sbjct: 179 AGALEKLEQLQSHENEKIQKEAQEALE 205

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score =  108 bits (270), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 117/223 (52%), Gaps = 5/223 (2%)
Query: 221 RNATWTLSNFCRGKPQPPFDQVRPA--LPALAQLVHSNDEEVLTDACWALSYLSDGTNDK 278
           + A   L+    G P      +  A  +  L +L+ S D EV  +A  AL+ ++ G ++ 
Sbjct: 20  KEAARDLAEIASG-PASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 78
Query: 279 IQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLT 338
           I+A+++AG    LV+LL      V   A R + NI +G D   + I+  G +  L+ LLT
Sbjct: 79  IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT 138
Query: 339 HSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNA 398
            +  + ++KEA   ++NI +G  + I+A++DAG V  LV LL + + +++KEAA A++N 
Sbjct: 139 STDSE-VQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 197
Query: 399 TSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENI 441
            SG T   IK +V  G ++ L  L    D  +       LENI
Sbjct: 198 ASGPTS-AIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENI 239

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score =  105 bits (263), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 77/255 (30%), Positives = 130/255 (50%), Gaps = 19/255 (7%)
Query: 249 LAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALR 308
           L +L+ S D E   +A   L+ ++ G    I+A+++AG    LV+LL      V   A R
Sbjct: 7   LVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAAR 66
Query: 309 TVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVI 368
            + NI +G D   + I+  G +  L+ LLT +  + ++KEA   ++NI +G  + I+A++
Sbjct: 67  ALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSE-VQKEAARALANIASGPDEAIKAIV 125
Query: 369 DAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDP 428
           DAG V  LV LL + + +++KEAA A++N  S G  E IK +V  G ++ L  L    D 
Sbjct: 126 DAGGVEVLVKLLTSTDSEVQKEAARALANIAS-GPDEAIKAIVDAGGVEVLVKLLTSTDS 184
Query: 429 RIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEK 488
            +       L NI            A+   +    +V +A G+E ++ L +  ++E+ ++
Sbjct: 185 EVQKEAARALANI------------ASGPTSAIKAIV-DAGGVEVLQKLLTSTDSEVQKE 231
Query: 489 AVKILETY----WLE 499
           A + LE      WLE
Sbjct: 232 AQRALENIKSGGWLE 246

>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin Length = 780

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 83/200 (41%), Gaps = 9/200 (4%)
Query: 255 SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV 314
           +ND E        L  LS    + + A+ ++G  P LV +LG P  SVL  A+ T+ N++
Sbjct: 204 TNDVETARCTSGTLHNLSH-HREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLL 262
Query: 315 TGDDFQTQCIITYGALPYLLGLLTHSHKKSIK-KEACWTISNITAGNRDQIQAVIDAGLV 373
              +     +   G L  ++ LL  ++ K +     C  I  +  GN++    ++ +G  
Sbjct: 263 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILASGGP 320
Query: 374 GPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPDPRIV 431
             LVN+++   ++   +  W  S               +V  G ++ L      P  R+V
Sbjct: 321 QALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLV 377
Query: 432 TVCLEGLENILKVGEAEKNM 451
             CL  L N+      ++ M
Sbjct: 378 QNCLWTLRNLSDAATKQEGM 397

>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region And Its C-Terminal Domain Length = 644

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 256 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
           N  +V T  C A     LS+  +G    + A+ ++G  P LV++LG P  SVL  A+ T+
Sbjct: 67  NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 122
Query: 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 369
            N++   +     +   G L  ++ LL  ++ K +     C  I  +  GN++    ++ 
Sbjct: 123 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 180
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 427
           +G    LVN+++   ++   +  W  S               +V  G ++ L      P 
Sbjct: 181 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 237
Query: 428 PRIVTVCLEGLENILKVGEAEKNM 451
            R+V  CL  L N+      ++ M
Sbjct: 238 QRLVQNCLWTLRNLSDAATKQEGM 261

>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX Length = 550

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 256 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
           N  +V T  C A     LS+  +G    + A+ ++G  P LV++LG P  SVL  A+ T+
Sbjct: 68  NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 123
Query: 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 369
            N++   +     +   G L  ++ LL  ++ K +     C  I  +  GN++    ++ 
Sbjct: 124 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 181
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 427
           +G    LVN+++   ++   +  W  S               +V  G ++ L      P 
Sbjct: 182 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 238
Query: 428 PRIVTVCLEGLENILKVGEAEKNM 451
            R+V  CL  L N+      ++ M
Sbjct: 239 QRLVQNCLWTLRNLSDAATKQEGM 262

>pdb|3QHE|A Chain A, Crystal Structure Of The Complex Between The Armadillo Repeat Domain Of Adenomatous Polyposis Coli And The Tyrosine-Rich Domain Of Sam68 Length = 337

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 98/236 (41%), Gaps = 18/236 (7%)
Query: 176 VREQAVWALGNVA-GDSPRCRDLVLSQGALIPLLAQLNERAK------LSMLRNATWTLS 228
           +R  A  AL N+  GD      L   +G +  L+AQL   ++       S+LRN +W  +
Sbjct: 102 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWR-A 160
Query: 229 NFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVC 288
           +    K       V+  +    ++   +  + +  A W LS  +  T +K       G  
Sbjct: 161 DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS--AHCTENKADICAVDGAL 218
Query: 289 PRLVELLGHPSPSVLIPA-------LRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH 341
             LV  L + S +  +         LR V +++  ++   Q +     L  LL  L  SH
Sbjct: 219 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK-SH 277
Query: 342 KKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISN 397
             +I   AC T+ N++A N    +A+ D G V  L NL+ +    I   +A A+ N
Sbjct: 278 SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 333

>pdb|3T7U|A Chain A, A New Crytal Structure Of Apc-Arm Length = 378

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 98/236 (41%), Gaps = 18/236 (7%)
Query: 176 VREQAVWALGNVA-GDSPRCRDLVLSQGALIPLLAQLNERAK------LSMLRNATWTLS 228
           +R  A  AL N+  GD      L   +G +  L+AQL   ++       S+LRN +W  +
Sbjct: 100 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWR-A 158
Query: 229 NFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVC 288
           +    K       V+  +    ++   +  + +  A W LS  +  T +K       G  
Sbjct: 159 DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS--AHCTENKADICAVDGAL 216
Query: 289 PRLVELLGHPSPSVLIPA-------LRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH 341
             LV  L + S +  +         LR V +++  ++   Q +     L  LL  L  SH
Sbjct: 217 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK-SH 275
Query: 342 KKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISN 397
             +I   AC T+ N++A N    +A+ D G V  L NL+ +    I   +A A+ N
Sbjct: 276 SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 331

>pdb|3NMZ|A Chain A, Crytal Structure Of Apc Complexed With Asef Length = 458

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 98/236 (41%), Gaps = 18/236 (7%)
Query: 176 VREQAVWALGNVA-GDSPRCRDLVLSQGALIPLLAQLNERAK------LSMLRNATWTLS 228
           +R  A  AL N+  GD      L   +G +  L+AQL   ++       S+LRN +W  +
Sbjct: 216 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWR-A 274
Query: 229 NFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVC 288
           +    K       V+  +    ++   +  + +  A W LS  +  T +K       G  
Sbjct: 275 DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS--AHCTENKADICAVDGAL 332
Query: 289 PRLVELLGHPSPSVLIPA-------LRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH 341
             LV  L + S +  +         LR V +++  ++   Q +     L  LL  L  SH
Sbjct: 333 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK-SH 391
Query: 342 KKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISN 397
             +I   AC T+ N++A N    +A+ D G V  L NL+ +    I   +A A+ N
Sbjct: 392 SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 447

>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1 Length = 540

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 256 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
           N  +V T  C A     LS+  +G    + A+ ++G  P LV++LG P  SVL  A+ T+
Sbjct: 73  NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 128
Query: 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 369
            N++   +     +   G L  ++ LL  ++ K +     C  I  +  GN++    ++ 
Sbjct: 129 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 186
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 427
           +G    LVN+++   ++   +  W  S               +V  G ++ L      P 
Sbjct: 187 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 243
Query: 428 PRIVTVCLEGLENILKVGEAEKNM 451
            R+V  CL  L N+      ++ M
Sbjct: 244 QRLVQNCLWTLRNLSDAATKQEGM 267

>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex Length = 538

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 256 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
           N  +V T  C A     LS+  +G    + A+ ++G  P LV++LG P  SVL  A+ T+
Sbjct: 71  NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 126
Query: 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 369
            N++   +     +   G L  ++ LL  ++ K +     C  I  +  GN++    ++ 
Sbjct: 127 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 184
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 427
           +G    LVN+++   ++   +  W  S               +V  G ++ L      P 
Sbjct: 185 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 241
Query: 428 PRIVTVCLEGLENILKVGEAEKNM 451
            R+V  CL  L N+      ++ M
Sbjct: 242 QRLVQNCLWTLRNLSDAATKQEGM 265

>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex Length = 540

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 256 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
           N  +V T  C A     LS+  +G    + A+ ++G  P LV++LG P  SVL  A+ T+
Sbjct: 74  NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 129
Query: 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 369
            N++   +     +   G L  ++ LL  ++ K +     C  I  +  GN++    ++ 
Sbjct: 130 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 187
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 427
           +G    LVN+++   ++   +  W  S               +V  G ++ L      P 
Sbjct: 188 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 244
Query: 428 PRIVTVCLEGLENILKVGEAEKNM 451
            R+V  CL  L N+      ++ M
Sbjct: 245 QRLVQNCLWTLRNLSDAATKQEGM 268

>pdb|3NMX|A Chain A, Crystal Structure Of Apc Complexed With Asef Length = 354

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 99/239 (41%), Gaps = 18/239 (7%)
Query: 173 SDDVREQAVWALGNVA-GDSPRCRDLVLSQGALIPLLAQLNERAK------LSMLRNATW 225
           S  +R  A  AL N+  GD      L   +G +  L+AQL   ++       S+LRN +W
Sbjct: 97  SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSW 156
Query: 226 TLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA 285
             ++    K       V+  +    ++   +  + +  A W LS  +  T +K       
Sbjct: 157 R-ADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS--AHCTENKADICAVD 213
Query: 286 GVCPRLVELLGHPSPSVLIPA-------LRTVGNIVTGDDFQTQCIITYGALPYLLGLLT 338
           G    LV  L + S +  +         LR V +++  ++   Q +     L  LL  L 
Sbjct: 214 GALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK 273
Query: 339 HSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISN 397
            SH  +I   AC T+ N++A N    +A+ D G V  L NL+ +    I   +A A+ N
Sbjct: 274 -SHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 331

>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex Length = 527

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 256 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
           N  +V T  C A     LS+  +G    + A+ ++G  P LV++LG P  SVL  A+ T+
Sbjct: 68  NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 123
Query: 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 369
            N++   +     +   G L  ++ LL  ++ K +     C  I  +  GN++    ++ 
Sbjct: 124 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 181
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 427
           +G    LVN+++   ++   +  W  S               +V  G ++ L      P 
Sbjct: 182 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 238
Query: 428 PRIVTVCLEGLENILKVGEAEKNM 451
            R+V  CL  L N+      ++ M
Sbjct: 239 QRLVQNCLWTLRNLSDAATKQEGM 262

>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled Peptide Inhibitor Length = 518

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 256 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
           N  +V T  C A     LS+  +G    + A+ ++G  P LV++LG P  SVL  A+ T+
Sbjct: 57  NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 112
Query: 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 369
            N++   +     +   G L  ++ LL  ++ K +     C  I  +  GN++    ++ 
Sbjct: 113 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 170
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 427
           +G    LVN+++   ++   +  W  S               +V  G ++ L      P 
Sbjct: 171 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 227
Query: 428 PRIVTVCLEGLENILKVGEAEKNM 451
            R+V  CL  L N+      ++ M
Sbjct: 228 QRLVQNCLWTLRNLSDAATKQEGM 251

>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo Repeat Complex Length = 532

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 256 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
           N  +V T  C A     LS+  +G    + A+ ++G  P LV++LG P  SVL  A+ T+
Sbjct: 72  NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 127
Query: 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 369
            N++   +     +   G L  ++ LL  ++ K +     C  I  +  GN++    ++ 
Sbjct: 128 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 185
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 427
           +G    LVN+++   ++   +  W  S               +V  G ++ L      P 
Sbjct: 186 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 242
Query: 428 PRIVTVCLEGLENILKVGEAEKNM 451
            R+V  CL  L N+      ++ M
Sbjct: 243 QRLVQNCLWTLRNLSDAATKQEGM 266

>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin Length = 516

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 256 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
           N  +V T  C A     LS+  +G    + A+ ++G  P LV++LG P  SVL  A+ T+
Sbjct: 55  NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 110
Query: 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 369
            N++   +     +   G L  ++ LL  ++ K +     C  I  +  GN++    ++ 
Sbjct: 111 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 168
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 427
           +G    LVN+++   ++   +  W  S               +V  G ++ L      P 
Sbjct: 169 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 225
Query: 428 PRIVTVCLEGLENILKVGEAEKNM 451
            R+V  CL  L N+      ++ M
Sbjct: 226 QRLVQNCLWTLRNLSDAATKQEGM 249

>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4 Length = 529

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 256 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
           N  +V T  C A     LS+  +G    + A+ ++G  P LV++LG P  SVL  A+ T+
Sbjct: 70  NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 125
Query: 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 369
            N++   +     +   G L  ++ LL  ++ K +     C  I  +  GN++    ++ 
Sbjct: 126 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 183
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 427
           +G    LVN+++   ++   +  W  S               +V  G ++ L      P 
Sbjct: 184 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 240
Query: 428 PRIVTVCLEGLENILKVGEAEKNM 451
            R+V  CL  L N+      ++ M
Sbjct: 241 QRLVQNCLWTLRNLSDAATKQEGM 264

>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta- Catenin Length = 533

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 256 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
           N  +V T  C A     LS+  +G    + A+ ++G  P LV++LG P  SVL  A+ T+
Sbjct: 72  NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 127
Query: 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 369
            N++   +     +   G L  ++ LL  ++ K +     C  I  +  GN++    ++ 
Sbjct: 128 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 185
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 427
           +G    LVN+++   ++   +  W  S               +V  G ++ L      P 
Sbjct: 186 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 242
Query: 428 PRIVTVCLEGLENILKVGEAEKNM 451
            R+V  CL  L N+      ++ M
Sbjct: 243 QRLVQNCLWTLRNLSDAATKQEGM 266

>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX Length = 514

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 256 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
           N  +V T  C A     LS+  +G    + A+ ++G  P LV++LG P  SVL  A+ T+
Sbjct: 55  NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 110
Query: 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 369
            N++   +     +   G L  ++ LL  ++ K +     C  I  +  GN++    ++ 
Sbjct: 111 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 168
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 427
           +G    LVN+++   ++   +  W  S               +V  G ++ L      P 
Sbjct: 169 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 225
Query: 428 PRIVTVCLEGLENILKVGEAEKNM 451
            R+V  CL  L N+      ++ M
Sbjct: 226 QRLVQNCLWTLRNLSDAATKQEGM 249

>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL DomainUNPHOSPHORYLATED APC R3 Length = 519

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 256 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
           N  +V T  C A     LS+  +G    + A+ ++G  P LV++LG P  SVL  A+ T+
Sbjct: 59  NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 114
Query: 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 369
            N++   +     +   G L  ++ LL  ++ K +     C  I  +  GN++    ++ 
Sbjct: 115 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 172
Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 427
           +G    LVN+++   ++   +  W  S               +V  G ++ L      P 
Sbjct: 173 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 229
Query: 428 PRIVTVCLEGLENILKVGEAEKNM 451
            R+V  CL  L N+      ++ M
Sbjct: 230 QRLVQNCLWTLRNLSDAATKQEGM 253

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	532
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	0.0
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	0.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	0.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	9e-57
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-114
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-70
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-63
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	7e-55
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	4e-39
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-27
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-23
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-15
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-114
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-83
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-78
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-69
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-64
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-56
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-33
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	5e-96
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	4e-91
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	7e-57
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	1e-11
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-94
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	7e-77
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	7e-64
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	9e-87
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	1e-67
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	3e-55
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-75
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-27
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-20
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-12
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	7e-66
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	4e-28
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-21
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	7e-20
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-11
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-62
3nmz_A	458	APC variant protein; protein-protein complex, arma	1e-56
3nmz_A	458	APC variant protein; protein-protein complex, arma	4e-35
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-19
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-59
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-17
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	7e-47
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	4e-39
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	2e-20
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	5e-43
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	3e-38
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	5e-19
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	1e-39
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	3e-22
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	3e-11
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	1e-20
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	5e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	7e-14
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	2e-12
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	5e-05
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	8e-14
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	5e-08
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	6e-05
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	2e-13
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	6e-09
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	7e-07
1qgk_B	44	Protein (importin alpha-2 subunit); transport rece	2e-12
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	1e-09
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	2e-09
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	3e-09
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	1e-08
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	6e-09
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	1e-06
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	2e-08
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	5e-05
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	2e-08
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	1e-07
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	4e-07
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	5e-07
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	6e-07
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	1e-05
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	5e-05
3grl_A	651	General vesicular transport factor P115; vesicle t	3e-06
1qgr_A	876	Protein (importin beta subunit); transport recepto	2e-05

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  606 bits (1564), Expect = 0.0
 Identities = 277/521 (53%), Positives = 350/521 (67%), Gaps = 15/521 (2%)

Query: 9   AEVRRNRYK--VAVDADEGRRRREDNMVEIRKNKREESLLKKRR-----EGLQSQQFPPP 61
            E RR  +K      ADE RRRR+   VE+RK KR+E+L K+R      +G  S +    
Sbjct: 14  PEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDES 73

Query: 62  APASNLNLQTKL-ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 120
           + +++    ++L + LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVP
Sbjct: 74  SVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVP 133

Query: 121 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQA 180
           R VEF+       LQ EAAWALTNIASGTS  TKVV+D  AVP+F++LL + S +V+EQA
Sbjct: 134 RLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQA 193

Query: 181 VWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPF 239
           +WALGNVAGDS   RD VL   A+ P+L   N   K S++R ATWTLSN CRGK PQP +
Sbjct: 194 IWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDW 252

Query: 240 DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS 299
             V  ALP LA+L++S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S
Sbjct: 253 SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES 312

Query: 300 PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG 359
             V  PALR VGNIVTG+D QTQ +I  G LP L  LL+   K++IKKEACWTISNITAG
Sbjct: 313 TLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAG 371

Query: 360 NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTH--EQIKYLVREGCIK 417
           N +QIQAVIDA L+ PLV LL+ AE+  KKEA WAISNA+SGG    + I+YLV +GCIK
Sbjct: 372 NTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIK 431

Query: 418 PLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENL 477
           PLCDL    D RI+ V L+ LENILK+GEA+K       ++N+ A  +E+A G+EKI N 
Sbjct: 432 PLCDLLEIADNRIIEVTLDALENILKMGEADKEA--RGLNINENADFIEKAGGMEKIFNC 489

Query: 478 QSHDNNEIYEKAVKILETYWLEEDDETIAAGDGPQPGFPYA 518
           Q ++N++IYEKA KI+ETY+ EE+D           G  + 
Sbjct: 490 QQNENDKIYEKAYKIIETYFGEEEDAVDETMAPQNAGNTFG 530

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  581 bits (1499), Expect = 0.0
 Identities = 233/527 (44%), Positives = 313/527 (59%), Gaps = 23/527 (4%)

Query: 11  VRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPPPAPASNLNLQ 70
           +  + +        G   R   M E    K E   +     G            SN    
Sbjct: 1   MHHHHHH-----SSGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAMADIGSNQGTV 55

Query: 71  TKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED 130
               S+  +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D
Sbjct: 56  N--WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD 113

Query: 131 YPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 190
              +QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AGD
Sbjct: 114 CSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGD 173

Query: 191 SPRCRDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPA 245
               RDLV+  GA+ PLLA L            LRN TWTLSN CR K P PP D V   
Sbjct: 174 GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQI 233

Query: 246 LPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIP 305
           LP L +L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG     ++ P
Sbjct: 234 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 293

Query: 306 ALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQ 365
           ALR +GNIVTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ
Sbjct: 294 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQ 352

Query: 366 AVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC 425
            V++ GLV  LV +L  A+F  +KEAAWAI+N TSGGT EQI YLV  G I+PL +L   
Sbjct: 353 QVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA 412

Query: 426 PDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEI 485
            D +I+ V L+ + NI +  E          +  + + ++EE  GL+KIE LQ H+N  +
Sbjct: 413 KDTKIIQVILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESV 465

Query: 486 YEKAVKILETYWLEEDDETIA-AGDGPQPGFPYAGNEVQVPSGGFNF 531
           Y+ ++ ++E Y+  E++E      +    GF +         G FNF
Sbjct: 466 YKASLNLIEKYFSVEEEEDQNVVPETTSEGFAFQVQ--DGAPGTFNF 510

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  567 bits (1464), Expect = 0.0
 Identities = 259/442 (58%), Positives = 316/442 (71%), Gaps = 5/442 (1%)

Query: 65  SNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQS-GVVPRFV 123
           +N+ +         M+  ++S     QL AT +FRKLLS E +PPI+EVI + GVV RFV
Sbjct: 11  NNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFV 70

Query: 124 EFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWA 183
           EFL R++   LQFE+AW LTNIASG S  T++VI  GAVPIF++LL+S  +DV+EQAVWA
Sbjct: 71  EFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWA 130

Query: 184 LGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPFDQV 242
           LGN+AGDS  CRD VL    L PLL   +++ +L+M RNA W LSN CRGK P P F +V
Sbjct: 131 LGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV 190

Query: 243 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSV 302
            P L  L+ L+  +D +VL DACWALSYLSDG NDKIQAVI+AGVC RLVELL H    V
Sbjct: 191 SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKV 250

Query: 303 LIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD 362
           + PALR VGNIVTGDD QTQ I+   AL  LL LL+   K+SIKKEACWTISNITAGNR 
Sbjct: 251 VSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSS-PKESIKKEACWTISNITAGNRA 309

Query: 363 QIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDL 422
           QIQ VIDA +   L+++LQ AEF  +KEAAWAI+NATSGG+ EQIKYLV  GCIKPLCDL
Sbjct: 310 QIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDL 369

Query: 423 FVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDN 482
               D +IV V L GLENIL++GE E         +N Y  L+EEA GL+KIE LQSH+N
Sbjct: 370 LTVMDSKIVQVALNGLENILRLGEQEAK--RNGTGINPYCALIEEAYGLDKIEFLQSHEN 427

Query: 483 NEIYEKAVKILETYWLEEDDET 504
            EIY+KA  ++E Y+  ED+++
Sbjct: 428 QEIYQKAFDLIEHYFGTEDEDS 449

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  195 bits (497), Expect = 9e-57
 Identities = 70/368 (19%), Positives = 138/368 (37%), Gaps = 19/368 (5%)

Query: 144 NIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVA--GDSPRCRDLVLSQ 201
                   N ++          ++++ S S + +  A      +     +P   +++ + 
Sbjct: 4   GFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTP 63

Query: 202 GALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRP-ALPALAQLVHSNDEEV 260
           G +   +  L  +   ++   + W L+N   G        ++  A+P   +L+ S  E+V
Sbjct: 64  GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDV 123

Query: 261 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP-SVLIPALRTVGNIVTGDDF 319
              A WAL  ++  +      V++  + P L++L    +  ++   A+  + N+  G   
Sbjct: 124 QEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSP 183

Query: 320 QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNL 379
             +       L  L  LL  S    +  +ACW +S ++ G  D+IQAVIDAG+   LV L
Sbjct: 184 PPEFAKVSPCLNVLSWLLFVSDTD-VLADACWALSYLSDGPNDKIQAVIDAGVCRRLVEL 242

Query: 380 LQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLE 439
           L + ++ +   A  A+ N  + G   Q + ++    ++ L  L   P   I       + 
Sbjct: 243 LMHNDYKVVSPALRAVGNIVT-GDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTIS 301

Query: 440 NILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLE 499
           NI             TA      Q V +A     + ++         ++A   +      
Sbjct: 302 NI-------------TAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSG 348

Query: 500 EDDETIAA 507
              E I  
Sbjct: 349 GSAEQIKY 356

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  352 bits (905), Expect = e-114
 Identities = 74/464 (15%), Positives = 141/464 (30%), Gaps = 19/464 (4%)

Query: 63  PASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRF 122
            AS   +    + + A+V  + + +       T      LS  R      + +SG +P  
Sbjct: 45  EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL-LAIFKSGGIPAL 103

Query: 123 VEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVW 182
           V+ L       + F A   L N+          V   G +   V LL   +         
Sbjct: 104 VKMLGSPV-DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD 162

Query: 183 ALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQV 242
            L  +A  +   + ++L+ G    L+  +       +L   +  L          P    
Sbjct: 163 CLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE 222

Query: 243 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSV 302
              + AL   +    + ++ +  W L  LSD    +       G+   LV+LLG    +V
Sbjct: 223 AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINV 279

Query: 303 LIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH-KKSIKKEACWTISNITAGNR 361
           +  A   + N+   +      +   G +  L+  +  +  ++ I + A   + ++T+ ++
Sbjct: 280 VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 339

Query: 362 D---QIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKP 418
           +      AV     +  +V LL         +A   +    +         L  +G I  
Sbjct: 340 EAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPR 398

Query: 419 LCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTA--------TADVNQYAQLVEEAEG 470
           L  L V            G      V                   A       ++     
Sbjct: 399 LVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNT 458

Query: 471 LEKIENLQSHDNNEIYEKAVKILETYWLEEDD-ETIAAGDGPQP 513
           +     L       I   A  +L     +++  E I A     P
Sbjct: 459 IPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAP 502

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  237 bits (605), Expect = 1e-70
 Identities = 65/386 (16%), Positives = 134/386 (34%), Gaps = 24/386 (6%)

Query: 110 IEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL 169
            +  + +  +P   + L  ED   +  +AA  +  ++   +    ++     V   V+ +
Sbjct: 7   DDAELATRAIPELTKLLNDED-QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 65

Query: 170 ASPSD-DVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLS 228
            + +D +        L N++         +   G +  L+  L      S+L  A  TL 
Sbjct: 66  QNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVD-SVLFYAITTLH 123

Query: 229 NFCRGKPQPPFDQVRP--ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAG 286
           N    +       VR    L  +  L++  + + L      L  L+ G  +    ++ +G
Sbjct: 124 NLLLHQEGAK-MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASG 182

Query: 287 VCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIK 346
               LV ++   +   L+     V  +++        I+  G +  L   LT    + + 
Sbjct: 183 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLV 241

Query: 347 KEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQ 406
           +   WT+ N++     Q       GL+G LV LL + + ++   AA  +SN T     + 
Sbjct: 242 QNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY-KN 297

Query: 407 IKYLVREGCIKPLCDLFV--CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQL 464
              + + G I+ L    +       I    +  L ++           +   +       
Sbjct: 298 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT----------SRHQEAEMAQNA 347

Query: 465 VEEAEGLEKIENLQSHDNNEIYEKAV 490
           V    GL  +  L    ++    KA 
Sbjct: 348 VRLHYGLPVVVKLLHPPSHWPLIKAT 373

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  217 bits (553), Expect = 3e-63
 Identities = 59/345 (17%), Positives = 116/345 (33%), Gaps = 20/345 (5%)

Query: 151 ENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQ 210
                 +   A+P   KLL      V  +A   +  ++        ++ S   +  ++  
Sbjct: 5   YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 64

Query: 211 LNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSY 270
           +     +   R    TL N    +           +PAL +++ S  + VL  A   L  
Sbjct: 65  MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 124

Query: 271 LSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGAL 330
           L         AV  AG   ++V LL   +   L      +  +  G+      I+  G  
Sbjct: 125 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 184

Query: 331 PYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKE 390
             L+ ++     + +       +  + +       A+++AG +  L   L +    + + 
Sbjct: 185 QALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQN 243

Query: 391 AAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKN 450
             W + N +   T +       EG +  L  L    D  +VT     L N+         
Sbjct: 244 CLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDDINVVTCAAGILSNL--------- 290

Query: 451 MGTATADVNQYAQLVEEAEGLEKIENL--QSHDNNEIYEKAVKIL 493
               T +  +   +V +  G+E +     ++ D  +I E A+  L
Sbjct: 291 ----TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  194 bits (495), Expect = 7e-55
 Identities = 64/364 (17%), Positives = 119/364 (32%), Gaps = 33/364 (9%)

Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ 135
             A+V  + +      L  T++  K+LS+  S     ++++G +      L      +L 
Sbjct: 184 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPS-QRLV 241

Query: 136 FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR 195
               W L N++      TK     G +   V+LL S   +V   A   L N+  ++ + +
Sbjct: 242 QNCLWTLRNLSD---AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 298

Query: 196 DLVLSQGALIPLLAQLNER-AKLSMLRNATWTLSNFCRGKPQPPFDQVRP----ALPALA 250
            +V   G +  L+  +     +  +   A   L +      +    Q        LP + 
Sbjct: 299 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV 358

Query: 251 QLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
           +L+H      L  A   L             + E G  PRLV+LL               
Sbjct: 359 KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 418

Query: 311 GNIVTGDDFQT---------------------QCIITYGALPYLLGLLTHSHKKSIKKEA 349
                 +  +                        I     +P  + LL    +  I++ A
Sbjct: 419 TQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIEN-IQRVA 477

Query: 350 CWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKY 409
              +  + A +++  +A+   G   PL  LL +    +   AA  +   +     +  K 
Sbjct: 478 AGVLCEL-AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKR 536

Query: 410 LVRE 413
           L  E
Sbjct: 537 LSVE 540

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  150 bits (379), Expect = 4e-39
 Identities = 61/326 (18%), Positives = 104/326 (31%), Gaps = 31/326 (9%)

Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFL-MREDYPQL 134
           L  +V  + SDD ++   A      L +         V Q G +   V  +    D   +
Sbjct: 265 LGTLVQLLGSDDINVVTCAAGILSNL-TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDI 323

Query: 135 QFEAAWALTNIASGTSENTKV---VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS 191
              A  AL ++ S   E       V  H  +P+ VKLL  PS     +A   L       
Sbjct: 324 TEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 383

Query: 192 PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQ 251
           P     +  QGA IP L QL  RA     R  +   +                       
Sbjct: 384 PANHAPLREQGA-IPRLVQLLVRAHQDTQRRTSMGGTQ-------------------QQF 423

Query: 252 LVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVG 311
           +     EE++     AL  L+   +++   +      P  V+LL  P  ++   A   + 
Sbjct: 424 VEGVRMEEIVEGCTGALHILARDVHNR-IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLC 482

Query: 312 NIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAG 371
            +    +   + I   GA   L  LL   ++  +   A   +  ++       +  +   
Sbjct: 483 ELAQDKEAA-EAIEAEGATAPLTELLHSRNEG-VATYAAAVLFRMSEDKPQDYKKRLSVE 540

Query: 372 LVGPLVNLLQNAEFDIKKEAAWAISN 397
           L     +L +       + A   +  
Sbjct: 541 L---TSSLFRTEPMAWNETADLGLDI 563

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  114 bits (286), Expect = 5e-27
 Identities = 28/220 (12%), Positives = 82/220 (37%), Gaps = 18/220 (8%)

Query: 276 NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLG 335
           N +  A +     P L +LL      V+  A   V  +   +  +   + +   +  ++ 
Sbjct: 4   NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR 63

Query: 336 LLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAI 395
            + +++     +    T+ N+ + +R+ + A+  +G +  LV +L +    +   A   +
Sbjct: 64  TMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 122

Query: 396 SNATSGGTHEQIKYLVRE-GCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTA 454
            N       E  K  VR  G ++ +  L    + + + +  + L+ +             
Sbjct: 123 HNLLLH--QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL------------- 167

Query: 455 TADVNQYAQLVEEAEGLEK-IENLQSHDNNEIYEKAVKIL 493
                +   ++  + G +  +  ++++   ++     ++L
Sbjct: 168 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 207

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  101 bits (254), Expect = 5e-23
 Identities = 53/262 (20%), Positives = 81/262 (30%), Gaps = 30/262 (11%)

Query: 85  SDDSSLQLEATTQFRKLLSI--ERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWAL 142
            D   +   A    R L S   E       V     +P  V+ L    +  L  +A   L
Sbjct: 318 GDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLI-KATVGL 376

Query: 143 TNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVR----------------------EQA 180
               +    N   + + GA+P  V+LL     D +                      E  
Sbjct: 377 IRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGC 436

Query: 181 VWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD 240
             AL  +A D    R ++      IPL  QL      ++ R A   L    + K      
Sbjct: 437 TGALHILARD-VHNRIVIRGLNT-IPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAI 494

Query: 241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP 300
           +   A   L +L+HS +E V T A   L  +S+   DK Q   +         L      
Sbjct: 495 EAEGATAPLTELLHSRNEGVATYAAAVLFRMSE---DKPQDYKKRLSVELTSSLFRTEPM 551

Query: 301 SVLIPALRTVGNIVTGDDFQTQ 322
           +    A   +     G+    +
Sbjct: 552 AWNETADLGLDIGAQGEPLGYR 573

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 77.7 bits (191), Expect = 3e-15
 Identities = 32/189 (16%), Positives = 52/189 (27%), Gaps = 13/189 (6%)

Query: 86  DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNI 145
               +    T     L     +     +     +P FV+ L+      +Q  AA  L  +
Sbjct: 428 RMEEIVEGCTGALHILARDVHN--RIVIRGLNTIPLFVQ-LLYSPIENIQRVAAGVLCEL 484

Query: 146 ASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALI 205
           A    E  + +   GA     +LL S ++ V   A   L  ++ D P+     LS     
Sbjct: 485 AQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTS 543

Query: 206 PLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDAC 265
            L               A   L    +G+P               +  HS          
Sbjct: 544 SLFRTEPMAWN----ETADLGLDIGAQGEPLG-----YRQDDPSYRSFHSGGYGQDALGM 594

Query: 266 WALSYLSDG 274
             +     G
Sbjct: 595 DPMMEHEMG 603

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  347 bits (891), Expect = e-114
 Identities = 74/457 (16%), Positives = 139/457 (30%), Gaps = 20/457 (4%)

Query: 63  PASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRF 122
            AS   +    + + A+V  + + +       T      LS  R      + +SG +P  
Sbjct: 48  EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL-LAIFKSGGIPAL 106

Query: 123 VEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVW 182
           V+ L       + F A   L N+          V   G +   V LL   +         
Sbjct: 107 VKMLGSPV-DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD 165

Query: 183 ALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQV 242
            L  +A  +   + ++L+ G    L+  +       +L   +  L          P    
Sbjct: 166 CLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE 225

Query: 243 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSV 302
              + AL   +    + ++ +  W L  LSD    +       G+   LV+LLG    +V
Sbjct: 226 AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINV 282

Query: 303 LIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH-KKSIKKEACWTISNITAGNR 361
           +  A   + N+   +      +   G +  L+  +  +  ++ I + A   + ++T+ ++
Sbjct: 283 VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 342

Query: 362 D---QIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKP 418
           +      AV     +  +V LL         +A   +    +         L  +G I  
Sbjct: 343 EAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPR 401

Query: 419 LCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTA--------TADVNQYAQLVEEAEG 470
           L  L V            G      V                   A       ++     
Sbjct: 402 LVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNT 461

Query: 471 LEKIENLQSHDNNEIYEKAVKILETYWLEEDDETIAA 507
           +     L       I   A  +L    L +D E   A
Sbjct: 462 IPLFVQLLYSPIENIQRVAAGVLCE--LAQDKEAAEA 496

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  268 bits (686), Expect = 2e-83
 Identities = 83/440 (18%), Positives = 143/440 (32%), Gaps = 25/440 (5%)

Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ 135
           +P +   +  +D  +  +A     +L   E S     +    +V   V  +   +  +  
Sbjct: 19  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETA 77

Query: 136 FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR 195
              A  L N+ S   E    +   G +P  VK+L SP D V   A+  L N+       +
Sbjct: 78  RCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136

Query: 196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRP-ALPALAQLVH 254
             V   G L  ++A LN+   +  L   T  L     G  +     +      AL  ++ 
Sbjct: 137 MAVRLAGGLQKMVALLNKT-NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 195

Query: 255 SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV 314
           +   E L      +  +    +    A++EAG    L   L  PS  ++   L T+ N+ 
Sbjct: 196 TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL- 254

Query: 315 TGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVG 374
              D  T+     G L  L+ LL       +   A   +SN+T  N      V   G + 
Sbjct: 255 --SDAATKQEGMEGLLGTLVQLLGSDDIN-VVTCAAGILSNLTCNNYKNKMMVCQVGGIE 311

Query: 375 PLVNLLQNA--EFDIKKEAAWAISNATSGGTH--EQIKYLVREGCIKPLCDLFVCPDPRI 430
            LV  +  A    DI + A  A+ + TS           +     +  +  L   P    
Sbjct: 312 ALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWP 371

Query: 431 VTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAV 490
           +     GL   L +  A                 + E   + ++  L    + +   +  
Sbjct: 372 LIKATVGLIRNLALCPANH-------------APLREQGAIPRLVQLLVRAHQDTQRRTS 418

Query: 491 KILETYWLEEDDETIAAGDG 510
                    E        +G
Sbjct: 419 MGGTQQQFVEGVRMEEIVEG 438

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  255 bits (652), Expect = 2e-78
 Identities = 71/444 (15%), Positives = 139/444 (31%), Gaps = 47/444 (10%)

Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ 135
           +PA+V  + S   S+   A T    L  + +      V  +G + + V  L+ +   +  
Sbjct: 103 IPALVKMLGSPVDSVLFYAITTLHNL-LLHQEGAKMAVRLAGGLQKMVA-LLNKTNVKFL 160

Query: 136 FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSD-DVREQAVWALGNVAGDSPRC 194
                 L  +A G  E+  +++  G     V ++ + +   +       L  ++      
Sbjct: 161 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSN 219

Query: 195 RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH 254
           +  ++  G +  L   L +     +++N  WTL N      +   + +   L  L QL+ 
Sbjct: 220 KPAIVEAGGMQALGLHLTD-PSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLG 276

Query: 255 SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL--GHPSPSVLIPALRTVGN 312
           S+D  V+T A   LS L+         V + G    LV  +        +  PA+  + +
Sbjct: 277 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 336

Query: 313 IVTGDDF---QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID 369
           + +           +  +  LP ++ LL          +A   +    A        + +
Sbjct: 337 LTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW-PLIKATVGLIRNLALCPANHAPLRE 395

Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGG--------------------THEQIKY 409
            G +  LV LL  A  D ++  +   +                                 
Sbjct: 396 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIV 455

Query: 410 LVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAE 469
           +     I     L   P   I  V    L  +              A   + A+ +E   
Sbjct: 456 IRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL--------------AQDKEAAEAIEAEG 501

Query: 470 GLEKIENLQSHDNNEIYEKAVKIL 493
               +  L    N  +   A  +L
Sbjct: 502 ATAPLTELLHSRNEGVATYAAAVL 525

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  231 bits (590), Expect = 2e-69
 Identities = 61/355 (17%), Positives = 121/355 (34%), Gaps = 23/355 (6%)

Query: 141 ALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLS 200
           A+ N+ +         +   A+P   KLL      V  +A   +  ++        ++ S
Sbjct: 1   AVVNLIN---YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57

Query: 201 QGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEV 260
              +  ++  +     +   R    TL N    +           +PAL +++ S  + V
Sbjct: 58  PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSV 117

Query: 261 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ 320
           L  A   L  L         AV  AG   ++V LL   +   L      +  +  G+   
Sbjct: 118 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 177

Query: 321 TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLL 380
              I+  G    L+ ++     + +       +  + +       A+++AG +  L   L
Sbjct: 178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHL 236

Query: 381 QNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLEN 440
            +    + +   W + N +   T +       EG +  L  L    D  +VT     L N
Sbjct: 237 TDPSQRLVQNCLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 292

Query: 441 ILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENL--QSHDNNEIYEKAVKIL 493
           +             T +  +   +V +  G+E +     ++ D  +I E A+  L
Sbjct: 293 L-------------TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  217 bits (555), Expect = 2e-64
 Identities = 62/389 (15%), Positives = 136/389 (34%), Gaps = 23/389 (5%)

Query: 110 IEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL 169
            +  + +  +P   + L  ED   +  +AA  +  ++   +    ++     V   V+ +
Sbjct: 10  DDAELATRAIPELTKLLNDED-QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 68

Query: 170 ASPSD-DVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLS 228
            + +D +        L N++         +   G +  L+  L      S+L  A  TL 
Sbjct: 69  QNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVD-SVLFYAITTLH 126

Query: 229 NFCRGKPQPPFDQVRP-ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGV 287
           N    +            L  +  L++  + + L      L  L+ G  +    ++ +G 
Sbjct: 127 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 186

Query: 288 CPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKK 347
              LV ++   +   L+     V  +++        I+  G +  L   LT   ++ + +
Sbjct: 187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQR-LVQ 245

Query: 348 EACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQI 407
              WT+ N++     Q       GL+G LV LL + + ++   AA  +SN T     +  
Sbjct: 246 NCLWTLRNLSDAATKQEGM---EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY-KNK 301

Query: 408 KYLVREGCIKPLCDLFV--CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLV 465
             + + G I+ L    +       I    +  L ++           +   +       V
Sbjct: 302 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL----------TSRHQEAEMAQNAV 351

Query: 466 EEAEGLEK-IENLQSHDNNEIYEKAVKIL 493
               GL   ++ L    +  + +  V ++
Sbjct: 352 RLHYGLPVVVKLLHPPSHWPLIKATVGLI 380

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  195 bits (497), Expect = 5e-56
 Identities = 64/371 (17%), Positives = 121/371 (32%), Gaps = 34/371 (9%)

Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ 135
             A+V  + +      L  T++  K+LS+  S     ++++G +       + +   +L 
Sbjct: 187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGL-HLTDPSQRLV 244

Query: 136 FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR 195
               W L N++      TK     G +   V+LL S   +V   A   L N+  ++ + +
Sbjct: 245 QNCLWTLRNLSD---AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 301

Query: 196 DLVLSQGALIPLLAQL-NERAKLSMLRNATWTLSNFCRGKPQPPFDQVR----PALPALA 250
            +V   G +  L+  +     +  +   A   L +      +    Q        LP + 
Sbjct: 302 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV 361

Query: 251 QLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
           +L+H      L  A   L             + E G  PRLV+LL               
Sbjct: 362 KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 421

Query: 311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDA 370
                 +  + + I+                      E C    +I A +      +   
Sbjct: 422 TQQQFVEGVRMEEIV----------------------EGCTGALHILARDVHNRIVIRGL 459

Query: 371 GLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRI 430
             +   V LL +   +I++ AA  +         E  + +  EG   PL +L    +  +
Sbjct: 460 NTIPLFVQLLYSPIENIQRVAAGVLCELAQ--DKEAAEAIEAEGATAPLTELLHSRNEGV 517

Query: 431 VTVCLEGLENI 441
            T     L  +
Sbjct: 518 ATYAAAVLFRM 528

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  131 bits (332), Expect = 4e-33
 Identities = 59/286 (20%), Positives = 96/286 (33%), Gaps = 28/286 (9%)

Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFL-MREDYPQL 134
           L  +V  + SDD ++   A      L +         V Q G +   V  +    D   +
Sbjct: 268 LGTLVQLLGSDDINVVTCAAGILSNL-TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDI 326

Query: 135 QFEAAWALTNIASGTSENTKV---VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS 191
              A  AL ++ S   E       V  H  +P+ VKLL  PS     +A   L       
Sbjct: 327 TEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 386

Query: 192 PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQ 251
           P     +  QGA IP L QL  RA     R  +   +                       
Sbjct: 387 PANHAPLREQGA-IPRLVQLLVRAHQDTQRRTSMGGTQ-------------------QQF 426

Query: 252 LVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVG 311
           +     EE++     AL  L+   +++I  +      P  V+LL  P  ++   A   + 
Sbjct: 427 VEGVRMEEIVEGCTGALHILARDVHNRI-VIRGLNTIPLFVQLLYSPIENIQRVAAGVLC 485

Query: 312 NIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT 357
            +    +   + I   GA   L  LL   ++  +   A   +  ++
Sbjct: 486 ELAQDKEAA-EAIEAEGATAPLTELLHSRNEG-VATYAAAVLFRMS 529

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  291 bits (746), Expect = 5e-96
 Identities = 98/250 (39%), Positives = 143/250 (57%), Gaps = 15/250 (6%)

Query: 245 ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLI 304
            LP + Q ++S+D +    A    S +    N++IQAVI+AG  P LV+LL  P+  +L 
Sbjct: 13  ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 305 PALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI 364
            AL  + NI +G + Q Q +I  GALP L+ LL+  +++ I +EA W +SNI +G  +QI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQI 131

Query: 365 QAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV 424
           QAVIDAG +  LV LL +    I +EA WA+SN  SGG +EQI+ ++  G +  L  L  
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLS 190

Query: 425 CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNE 484
            P+ +I+   L  L NI   G              +  Q V+EA  LEK+E LQSH+N +
Sbjct: 191 SPNEQILQEALWALSNIASGGN-------------EQKQAVKEAGALEKLEQLQSHENEK 237

Query: 485 IYEKAVKILE 494
           I ++A + LE
Sbjct: 238 IQKEAQEALE 247

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  278 bits (713), Expect = 4e-91
 Identities = 90/252 (35%), Positives = 139/252 (55%), Gaps = 4/252 (1%)

Query: 65  SNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVE 124
            + +       LP M   + SDD   QL AT +F ++LS + +  I+ VI +G +P  V+
Sbjct: 3   GSHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQ 61

Query: 125 FLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWAL 184
            L   +  Q+  EA WAL+NIASG +E  + VID GA+P  V+LL+SP++ + ++A+WAL
Sbjct: 62  LLSSPN-EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 120

Query: 185 GNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVR- 243
            N+A         V+  GA +P L QL       +L+ A W LSN   G  +     +  
Sbjct: 121 SNIASGGNEQIQAVIDAGA-LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 179

Query: 244 PALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVL 303
            ALPAL QL+ S +E++L +A WALS ++ G N++ QAV EAG   +L +L  H +  + 
Sbjct: 180 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQ 239

Query: 304 IPALRTVGNIVT 315
             A   +  + +
Sbjct: 240 KEAQEALEKLQS 251

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  189 bits (482), Expect = 7e-57
 Identities = 92/245 (37%), Positives = 135/245 (55%), Gaps = 5/245 (2%)

Query: 199 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVR--PALPALAQLVHSN 256
              G+ +P + Q      +    +AT   S             V    ALPAL QL+ S 
Sbjct: 8   HHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGN-EQIQAVIDAGALPALVQLLSSP 66

Query: 257 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 316
           +E++L +A WALS ++ G N++IQAVI+AG  P LV+LL  P+  +L  AL  + NI +G
Sbjct: 67  NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 126

Query: 317 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 376
            + Q Q +I  GALP L+ LL+  +++ I +EA W +SNI +G  +QIQAVIDAG +  L
Sbjct: 127 GNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQIQAVIDAGALPAL 185

Query: 377 VNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLE 436
           V LL +    I +EA WA+SN  SG  +EQ + +   G ++ L  L    + +I     E
Sbjct: 186 VQLLSSPNEQILQEALWALSNIASG-GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQE 244

Query: 437 GLENI 441
            LE +
Sbjct: 245 ALEKL 249

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 63.8 bits (156), Expect = 1e-11
 Identities = 30/133 (22%), Positives = 50/133 (37%), Gaps = 14/133 (10%)

Query: 361 RDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLC 420
           R           +  +   L + +   +  A    S   S G +EQI+ ++  G +  L 
Sbjct: 2   RGSHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALV 60

Query: 421 DLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSH 480
            L   P+ +I+   L  L NI            A+    Q  Q V +A  L  +  L S 
Sbjct: 61  QLLSSPNEQILQEALWALSNI------------ASGGNEQ-IQAVIDAGALPALVQLLSS 107

Query: 481 DNNEIYEKAVKIL 493
            N +I ++A+  L
Sbjct: 108 PNEQILQEALWAL 120

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  303 bits (778), Expect = 2e-94
 Identities = 73/444 (16%), Positives = 136/444 (30%), Gaps = 20/444 (4%)

Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ 135
           + A+V  + + +       T+     LS  R   +  + +SG +P  V  L       + 
Sbjct: 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLA-IFKSGGIPALVNML-GSPVDSVL 251

Query: 136 FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR 195
           F A   L N+          V   G +   V LL   +          L  +A  +   +
Sbjct: 252 FHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 311

Query: 196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHS 255
            ++L+ G    L+  +       +L   +  L          P       + AL   +  
Sbjct: 312 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD 371

Query: 256 NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT 315
             + ++ +  W L  LSD    +       G+   LV+LLG    +V+  A   + N+  
Sbjct: 372 PSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 428

Query: 316 GDDFQTQCIITYGALPYLLGLLTHSH-KKSIKKEACWTISNITAGNRD---QIQAVIDAG 371
            +      +   G +  L+  +  +  ++ I + A   + ++T+ ++D      AV    
Sbjct: 429 NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHY 488

Query: 372 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIV 431
            +  +V LL         +A   +    +         L  +G I  L  L V       
Sbjct: 489 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAHQDTQ 547

Query: 432 TVCLEGLENILKVGEAEKNMGTA--------TADVNQYAQLVEEAEGLEKIENLQSHDNN 483
                G      V                   A       ++     +     L      
Sbjct: 548 RRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIE 607

Query: 484 EIYEKAVKILETYWLEEDDETIAA 507
            I   A  +L    L +D E   A
Sbjct: 608 NIQRVAAGVL--CELAQDKEAAEA 629

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  256 bits (656), Expect = 7e-77
 Identities = 70/424 (16%), Positives = 135/424 (31%), Gaps = 27/424 (6%)

Query: 74  ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYP- 132
           +            D   Q   T   R      R+    E +  G+     +F        
Sbjct: 67  QGFNQSFNQEQVADIDGQYAMTRAQR-----VRAAMFPETLDEGMQIPSTQFDSAHPTNV 121

Query: 133 QLQFEAAWALTNIASG-TSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS 191
           Q   E +  L +      +      +   A+P   KLL      V  +A   +  ++   
Sbjct: 122 QRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE 181

Query: 192 PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQ 251
                ++ S   +  ++  +     +   R  + TL N    +           +PAL  
Sbjct: 182 ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVN 241

Query: 252 LVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVG 311
           ++ S  + VL  A   L  L         AV  AG   ++V LL   +   L      + 
Sbjct: 242 MLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 301

Query: 312 NIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAG 371
            +  G+      I+  G    L+ ++  ++           +  + +       A+++AG
Sbjct: 302 ILAYGNQESKLIILASGGPQALVNIM-RTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAG 360

Query: 372 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIV 431
            +  L   L +    + +   W + N +   T +       EG +  L  L    D  +V
Sbjct: 361 GMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDDINVV 416

Query: 432 TVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENL--QSHDNNEIYEKA 489
           T     L N+             T +  +   +V +  G+E +     ++ D  +I E A
Sbjct: 417 TCAAGILSNL-------------TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA 463

Query: 490 VKIL 493
           +  L
Sbjct: 464 ICAL 467

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  221 bits (564), Expect = 7e-64
 Identities = 71/435 (16%), Positives = 135/435 (31%), Gaps = 34/435 (7%)

Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ 135
             A+V  + +      L  T++  K+LS+  S     ++++G +      L      +L 
Sbjct: 320 PQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPS-QRLV 377

Query: 136 FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR 195
               W L N++      TK     G +   V+LL S   +V   A   L N+  ++ + +
Sbjct: 378 QNCLWTLRNLSDA---ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 434

Query: 196 DLVLSQGALIPLLAQL-NERAKLSMLRNATWTLSNFCRGKPQPPFDQVR----PALPALA 250
            +V   G +  L+  +     +  +   A   L +           Q        LP + 
Sbjct: 435 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVV 494

Query: 251 QLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
           +L+H      L  A   L             + E G  PRLV+LL               
Sbjct: 495 KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 554

Query: 311 GNIVTGDDFQT---------------------QCIITYGALPYLLGLLTHSHKKSIKKEA 349
                 +  +                        I     +P  + LL    +  I++ A
Sbjct: 555 TQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIEN-IQRVA 613

Query: 350 CWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKY 409
              +  + A +++  +A+   G   PL  LL +    +   AA  +   +     +  K 
Sbjct: 614 AGVLCEL-AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKR 672

Query: 410 LVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAE 469
           L  E     L             + L+       +G  + +    +     Y Q     +
Sbjct: 673 LSVE-LTSSLFRTEPMTWNETGDLGLDIGAQGEPLGYRQDDPSYRSFHSGGYGQDAMGMD 731

Query: 470 GLEKIENLQSHDNNE 484
            + + E    H   +
Sbjct: 732 PMMEHEMAGHHPGPD 746

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  265 bits (680), Expect = 9e-87
 Identities = 80/197 (40%), Positives = 118/197 (59%), Gaps = 2/197 (1%)

Query: 245 ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLI 304
            LP + Q ++S D++ L  A   LS ++ G N++IQAVI+AG  P LV+LL  P+  +L 
Sbjct: 13  ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 305 PALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI 364
            AL  + NI +G + Q Q +I  GALP L+ LL+  +++ I +EA W +SNI +G  +QI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQI 131

Query: 365 QAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV 424
           QAVIDAG +  LV LL +    I +EA WA+SN  SGG +EQ + +   G ++ L  L  
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQS 190

Query: 425 CPDPRIVTVCLEGLENI 441
             + +I     E LE +
Sbjct: 191 HENEKIQKEAQEALEKL 207

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  216 bits (552), Expect = 1e-67
 Identities = 80/217 (36%), Positives = 116/217 (53%), Gaps = 15/217 (6%)

Query: 280 QAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH 339
                    P++V+ L  P    L  ALR +  I +G + Q Q +I  GALP L+ LL+ 
Sbjct: 6   HHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS 65

Query: 340 SHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNAT 399
            +++ I +EA W +SNI +G  +QIQAVIDAG +  LV LL +    I +EA WA+SN  
Sbjct: 66  PNEQ-ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 124

Query: 400 SGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVN 459
           S G +EQI+ ++  G +  L  L   P+ +I+   L  L NI   G              
Sbjct: 125 S-GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN------------- 170

Query: 460 QYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETY 496
           +  Q V+EA  LEK+E LQSH+N +I ++A + LE  
Sbjct: 171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  183 bits (468), Expect = 3e-55
 Identities = 69/206 (33%), Positives = 108/206 (52%), Gaps = 3/206 (1%)

Query: 111 EEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA 170
                   +P+ V+ L   D  Q    A   L+ IASG +E  + VID GA+P  V+LL+
Sbjct: 6   HHHHHGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS 64

Query: 171 SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF 230
           SP++ + ++A+WAL N+A         V+  GAL  L+  L+      +L+ A W LSN 
Sbjct: 65  SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNI 123

Query: 231 CRGKPQPPFDQVRP-ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 289
             G  +     +   ALPAL QL+ S +E++L +A WALS ++ G N++ QAV EAG   
Sbjct: 124 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALE 183

Query: 290 RLVELLGHPSPSVLIPALRTVGNIVT 315
           +L +L  H +  +   A   +  + +
Sbjct: 184 KLEQLQSHENEKIQKEAQEALEKLQS 209

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  242 bits (618), Expect = 1e-75
 Identities = 66/351 (18%), Positives = 114/351 (32%), Gaps = 35/351 (9%)

Query: 91  QLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTS 150
           Q+ A  +          P +++              M          A   L  + S   
Sbjct: 15  QIRAYCETCWEWQEAHEPGMDQDKN----------PMPAPVEHQICPAVCVLMKL-SFDE 63

Query: 151 ENTKVVIDHGAVPIFVKLLASPSD-----------DVREQAVWALGNVAGDSPRCRDLVL 199
           E+   + + G +    +LL    +            +R  A  AL N+       +  + 
Sbjct: 64  EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 123

Query: 200 SQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVR--PALPALAQLV-HSN 256
           S    +  L    +     + +     L N            +R   ++ AL +      
Sbjct: 124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK 183

Query: 257 DEEVLTDACWALSYLS-DGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIP-------ALR 308
            E  L     AL  LS   T +K       G    LV  L + S +  +         LR
Sbjct: 184 KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILR 243

Query: 309 TVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVI 368
            V +++  ++   Q +     L  LL  L  SH  +I   AC T+ N++A N    +A+ 
Sbjct: 244 NVSSLIATNEDHRQILRENNCLQTLLQHLK-SHSLTIVSNACGTLWNLSARNPKDQEALW 302

Query: 369 DAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGG-THEQIKYLVREGCIKP 418
           D G V  L NL+ +    I   +A A+ N  +      +   ++  G   P
Sbjct: 303 DMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGSSLP 353

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  112 bits (282), Expect = 2e-27
 Identities = 48/225 (21%), Positives = 80/225 (35%), Gaps = 14/225 (6%)

Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ 135
           + A+VA + S+   LQ    +  R L         + + + G V   +E  +        
Sbjct: 129 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 188

Query: 136 FEAAWALTNIASGTSEN-TKVVIDHGAVPIFVKLLASPSDD----VREQAVWALGNVAG- 189
                AL N+++  +EN   +    GA+   V  L   S      + E     L NV+  
Sbjct: 189 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 248

Query: 190 --DSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP--QPPFDQVRPA 245
              +   R ++     L  LL  L     L+++ NA  TL N     P  Q     +  A
Sbjct: 249 IATNEDHRQILRENNCLQTLLQHLKS-HSLTIVSNACGTLWNLSARNPKDQEALWDMG-A 306

Query: 246 LPALAQLVHSNDEEVLTDACWALSYLSDG--TNDKIQAVIEAGVC 288
           +  L  L+HS  + +   +  AL  L        K   ++  G  
Sbjct: 307 VSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGSS 351

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 91.8 bits (228), Expect = 2e-20
 Identities = 29/220 (13%), Positives = 69/220 (31%), Gaps = 25/220 (11%)

Query: 284 EAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLL------ 337
                 +    +  P    + PA+  +  +   ++     +   G L  +  LL      
Sbjct: 30  HEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEE-HRHAMNELGGLQAIAELLQVDCEM 88

Query: 338 ----THSHKKSIKKEACWTISNITAGNRDQIQAVI-DAGLVGPLVNLLQNAEFDIKKEAA 392
                  +  ++++ A   ++N+T G+      +    G +  LV  L++   D+++  A
Sbjct: 89  YGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIA 148

Query: 393 WAISNATSGGTHEQIKYLVREGCIKPLCDLFV-CPDPRIVTVCLEGLENILKVGEAEKNM 451
             + N +        K L   G +K L +  +       +   L  L N+       K  
Sbjct: 149 SVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK-- 206

Query: 452 GTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVK 491
                     A +      L  +    ++ +       ++
Sbjct: 207 ----------ADICAVDGALAFLVGTLTYRSQTNTLAIIE 236

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 67.6 bits (165), Expect = 2e-12
 Identities = 19/148 (12%), Positives = 44/148 (29%), Gaps = 14/148 (9%)

Query: 306 ALRTVGNIVT-GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI 364
            L  +  I    +            +      +    +      A   +  + + + +  
Sbjct: 9   MLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEH-QICPAVCVLMKL-SFDEEHR 66

Query: 365 QAVIDAGLVGPLVNLLQNAEF-----------DIKKEAAWAISNATSGGTHEQIKYLVRE 413
            A+ + G +  +  LLQ                +++ A  A++N T G    +      +
Sbjct: 67  HAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK 126

Query: 414 GCIKPLCDLFVCPDPRIVTVCLEGLENI 441
           GC++ L          +  V    L N+
Sbjct: 127 GCMRALVAQLKSESEDLQQVIASVLRNL 154

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  219 bits (559), Expect = 7e-66
 Identities = 69/451 (15%), Positives = 136/451 (30%), Gaps = 70/451 (15%)

Query: 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVRE 178
           +P+ V++L  +D  + Q   A+ + +         + V   G +   V LL SP+ +V++
Sbjct: 4   IPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 179 QAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP 238
            A  AL N+   S   +     Q  +   ++ L       + +  T  L N         
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 239 FDQVRPALPALAQLV----------------HSNDEEVLTDACWALSYLSDGTNDKIQAV 282
            + +  ALP LA  V                   D EV  +A   L  LS     +    
Sbjct: 123 -ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMR 181

Query: 283 IEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHK 342
             +G+   L+  + +   +           +    +   +           L     +  
Sbjct: 182 NYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241

Query: 343 KSIKKEACWTISNITAGNRDQIQA-------------VIDAGLVGPLVNLLQNAEFDIKK 389
                  C++  +    N +                 +  +  +   +NL+  ++ D   
Sbjct: 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATL 301

Query: 390 EAA-WAISNATSG----GTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV 444
           EA   A+ N T+      +       ++E  +  +  L    +  +V      L N+ + 
Sbjct: 302 EACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361

Query: 445 GEAEKNMGTA---------------------------------TADVNQYAQLVEEAEGL 471
               + MG                                    A   Q A+    +  L
Sbjct: 362 PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSML 421

Query: 472 EKIENL-QSHDNNEIYEKAVKILETYWLEED 501
             I NL +S  + +  E A  +L   W  ++
Sbjct: 422 NNIINLCRSSASPKAAEAARLLLSDMWSSKE 452

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  116 bits (290), Expect = 4e-28
 Identities = 44/308 (14%), Positives = 89/308 (28%), Gaps = 28/308 (9%)

Query: 116 SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL------ 169
           SG              P++ F A   L N++S  +    +    G +   +  +      
Sbjct: 141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA 200

Query: 170 ASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA--------KLSMLR 221
           +   D   E  +  L N++            Q       A   + +           M  
Sbjct: 201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNN 260

Query: 222 NATWTLSNFCRG-KPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDK-- 278
           N    L       K              L  +  S  +  L     AL  L+        
Sbjct: 261 NYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320

Query: 279 ---IQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLG 335
                  ++    P++  LL   +  V+      + N+          ++     P +  
Sbjct: 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTR 378

Query: 336 LLTHSHKKSIKKE-----ACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFD-IKK 389
           LLT     +   E     AC+T+ N+ A      +    + ++  ++NL +++      +
Sbjct: 379 LLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAE 438

Query: 390 EAAWAISN 397
            A   +S+
Sbjct: 439 AARLLLSD 446

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 95.3 bits (236), Expect = 3e-21
 Identities = 34/255 (13%), Positives = 78/255 (30%), Gaps = 20/255 (7%)

Query: 244 PALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVL 303
             +P   Q + S DE+      + + +         Q V + G   +LV+LL  P+ +V 
Sbjct: 2   LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQ 61

Query: 304 IPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ 363
             A   + N+V               +   + LL  +    I+K+    + N+++   D+
Sbjct: 62  QAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST--DE 119

Query: 364 IQAVIDAGLVGPLVNLL----------------QNAEFDIKKEAAWAISNATSGGTHEQI 407
           ++  + A  +  L + +                +  + ++   A   + N +S       
Sbjct: 120 LKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSAD--AGR 177

Query: 408 KYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEE 467
           + +     +      +V           + +EN + V         A             
Sbjct: 178 QTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA 237

Query: 468 AEGLEKIENLQSHDN 482
                +  +     N
Sbjct: 238 RNAYTEKSSTGCFSN 252

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 91.4 bits (226), Expect = 7e-20
 Identities = 34/307 (11%), Positives = 76/307 (24%), Gaps = 20/307 (6%)

Query: 202 GALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVR-PALPALAQLVHSNDEEV 260
           G  IP   Q              + + + C           +   +  L  L+ S ++ V
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNV 60

Query: 261 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLIPALRTVGNIVTGDDF 319
              A  AL  L   +                V LL    +  +       + N+ + D+ 
Sbjct: 61  QQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120

Query: 320 QTQCIITYGALPYLLGLL---------------THSHKKSIKKEACWTISNITAGNRDQI 364
           + +  +   ALP L   +                      +   A   + N+++ +  + 
Sbjct: 121 KEE--LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQ 178

Query: 365 QAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV 424
                +GL+  L+  +QN     + +     +                    + L     
Sbjct: 179 TMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR 238

Query: 425 CPDPRI-VTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNN 483
                   T C     + +     +  +     +      L         +  +     +
Sbjct: 239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKD 298

Query: 484 EIYEKAV 490
              E   
Sbjct: 299 ATLEACA 305

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 65.6 bits (159), Expect = 1e-11
 Identities = 29/218 (13%), Positives = 61/218 (27%), Gaps = 15/218 (6%)

Query: 30  EDNMVEIRKNKREESLLKKRREGLQSQQFPPPA-PASNLNLQTKLESLPAMVAGVWSDDS 88
            +   E        +   K          P               +++   +  +     
Sbjct: 238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKK 297

Query: 89  SLQLEATTQFRKLLSIERSPPIEE-----VIQSGVVPRFVEFLMREDYPQLQFEAAWALT 143
              LEA     + L+  +            ++   +P+    L++     +    A  L+
Sbjct: 298 DATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIAR-LLQSGNSDVVRSGASLLS 356

Query: 144 NIASGTSENTKVVIDHGAVPIFVKLLAS------PSDDVREQAVWALGNVAGDSPRCRDL 197
           N++         V+ +   P   +LL S       S+D+   A + + N+    P+    
Sbjct: 357 NMSR--HPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQ 414

Query: 198 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP 235
             S   L  ++      A       A   LS+    K 
Sbjct: 415 YFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  210 bits (536), Expect = 2e-62
 Identities = 74/422 (17%), Positives = 124/422 (29%), Gaps = 87/422 (20%)

Query: 5   PNARAEVRRN-----RYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFP 59
                E R          +    D+ R RRE  ++ + +  R                  
Sbjct: 92  SRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWE---------- 141

Query: 60  PPAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVV 119
                     +     +      + +        A     KL   E       + + G +
Sbjct: 142 --------WQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRH--AMNELGGL 191

Query: 120 PRFVEFL----------MREDYPQLQFEAAWALTNIASGTSENTKVVI-DHGAVPIFVKL 168
               E L                 L+  A  ALTN+  G   N   +    G +   V  
Sbjct: 192 QAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQ 251

Query: 169 LASPSDDVREQAVWALGNVAGD-SPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTL 227
           L S S+D+++     L N++       +  +   G+ +  L +                 
Sbjct: 252 LKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGS-VKALMEC---------------- 294

Query: 228 SNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS-DGTNDKIQAVIEAG 286
                                    +    E  L     AL  LS   T +K       G
Sbjct: 295 ------------------------ALEVKKESTLKSVLSALWNLSAHCTENKADICAVDG 330

Query: 287 VCPRLVELLGHPSPSVLIP-------ALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH 339
               LV  L + S +  +         LR V +++  ++   Q +     L  LL  L  
Sbjct: 331 ALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK- 389

Query: 340 SHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNAT 399
           SH  +I   AC T+ N++A N    +A+ D G V  L NL+ +    I   +A A+ N  
Sbjct: 390 SHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM 449

Query: 400 SG 401
           + 
Sbjct: 450 AN 451

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  195 bits (496), Expect = 1e-56
 Identities = 78/456 (17%), Positives = 157/456 (34%), Gaps = 67/456 (14%)

Query: 45  LLKKRREGLQSQQFPPPAPASNLN--LQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLL 102
           +         S    P      L   L TK+E + ++++ + + D   + + +   R LL
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMRLTSHLGTKVEMVYSLLSMLGTHD---KDDMS---RTLL 54

Query: 103 SIERSPPIEEVI-QSGVVPRFVEFLMRED-----------YPQLQFEAAWALTNIASGTS 150
           ++  S      + QSG +P  ++ L   D             + +  A+ AL NI     
Sbjct: 55  AMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQP 114

Query: 151 ENTKVVIDHGAVPIFVKL------------------------LASPSDDVREQAVWALGN 186
           ++ +   +   + +  ++                        + +P +     AV  L  
Sbjct: 115 DDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMK 174

Query: 187 VAGDSPRCRDLVLSQGALIPLLAQL----------NERAKLSMLRNATWTLSNFCRGKP- 235
           ++ D    R  +   G L  +   L          N+   +++ R A   L+N   G   
Sbjct: 175 LSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVA 233

Query: 236 -QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVI-EAGVCPRLVE 293
            +     ++  + AL   + S  E++       L  LS   +   +  + E G    L+E
Sbjct: 234 NKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALME 293

Query: 294 LLGHPS-PSVLIPALRTVGNI-VTGDDFQTQCIITYGALPYLLGLLTHSHKKS---IKKE 348
                   S L   L  + N+     + +       GAL +L+G LT+  + +   I + 
Sbjct: 294 CALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIES 353

Query: 349 ACWTISNIT---AGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHE 405
               + N++   A N D  Q + +   +  L+  L++    I   A   + N ++    +
Sbjct: 354 GGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNP-K 412

Query: 406 QIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENI 441
             + L   G +  L +L       I       L N+
Sbjct: 413 DQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL 448

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  136 bits (343), Expect = 4e-35
 Identities = 59/385 (15%), Positives = 123/385 (31%), Gaps = 53/385 (13%)

Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL------------ASPSDDVREQAVW 182
           + + +  L  + S + ++   +   G +P+ ++LL            +  S + R +A  
Sbjct: 46  KDDMSRTLLAM-SSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASA 104

Query: 183 ALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQV 242
           AL N+    P        +  ++ LL Q+             W              + +
Sbjct: 105 ALHNIIHSQP-DDKRGRREIRVLHLLEQIRA------YCETCWEWQEAHEPGMDQDKNPM 157

Query: 243 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL------- 295
                       +  E  +  A   L  LS     +  A+ E G    + ELL       
Sbjct: 158 P-----------APVEHQICPAVCVLMKLSFDEEHR-HAMNELGGLQAIAELLQVDCEMY 205

Query: 296 ----GHPSPSVLIPALRTVGNIVTGDDFQTQCIITY-GALPYLLGLLTHSHKKSIKKEAC 350
                H S ++   A   + N+  GD      + +  G +  L+  L  S  + +++   
Sbjct: 206 GLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQL-KSESEDLQQVIA 264

Query: 351 WTISNITAGNRDQIQAVI-DAGLVGPLVNLLQNAEFD-IKKEAAWAISNATSGGTHEQIK 408
             + N++       +  + + G V  L+      + +   K    A+ N ++  T  +  
Sbjct: 265 SVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKAD 324

Query: 409 YLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEA 468
               +G +  L               +E    IL      +N+ +  A    + Q++ E 
Sbjct: 325 ICAVDGALAFLVGTLTYRSQTNTLAIIESGGGIL------RNVSSLIATNEDHRQILREN 378

Query: 469 EGLEKIENLQSHDNNEIYEKAVKIL 493
             L+ +       +  I   A   L
Sbjct: 379 NCLQTLLQHLKSHSLTIVSNACGTL 403

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 90.0 bits (223), Expect = 2e-19
 Identities = 25/202 (12%), Positives = 56/202 (27%), Gaps = 48/202 (23%)

Query: 85  SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED---YPQLQFEAAWA 141
               S      +    L +       +     G +   V  L          +       
Sbjct: 298 VKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGI 357

Query: 142 LTNIAS---GTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 198
           L N++S      ++ +++ ++  +   ++ L S S  +   A   L N++  +P+ ++ +
Sbjct: 358 LRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEAL 417

Query: 199 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDE 258
              GA+                                            L  L+HS  +
Sbjct: 418 WDMGAV------------------------------------------SMLKNLIHSKHK 435

Query: 259 EVLTDACWALSYLSDGTNDKIQ 280
            +   +  AL  L      K +
Sbjct: 436 MIAMGSAAALRNLMANRPAKYK 457

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  206 bits (524), Expect = 1e-59
 Identities = 78/486 (16%), Positives = 155/486 (31%), Gaps = 70/486 (14%)

Query: 73  LESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYP 132
           +          W+  +  +  +      L S+ +  P     +   +P  +  L      
Sbjct: 7   IGEEVPSDQYYWAPLAQHERGSL---ASLDSLRKGGPPPPNWRQPELPEVIAMLGFRL-D 62

Query: 133 QLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVA-GDS 191
            ++  AA  L ++     +    V     +P+ V LL  P  +V   A  AL N++ G  
Sbjct: 63  AVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRD 122

Query: 192 PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQ 251
              +  + +   +  L+  L +   + +    T TL N          + V  AL AL  
Sbjct: 123 QDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWN-LSSHDSIKMEIVDHALHALTD 181

Query: 252 LV------------------HSNDEEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLV 292
            V                  H   E VLT+    L  +S   ++  + + E  G+   L+
Sbjct: 182 EVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALI 241

Query: 293 ELLGH-------------------------------PSPSVLIPALRTVGNIVTGDDFQT 321
            ++                                  +      A     N  T      
Sbjct: 242 FIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGY 301

Query: 322 QCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI----QAVIDAGLVGPLV 377
           + +     +   + LL  S   +I + +   I N+ AG          A+     +  + 
Sbjct: 302 ELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIA 361

Query: 378 NLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEG 437
           +LL N    + K A+ A+ N        + K L+ +  I  L      P  +  +     
Sbjct: 362 DLLTNEHERVVKAASGALRNLAV---DARNKELIGKHAIPNLVKN--LPGGQQNSSWNFS 416

Query: 438 LENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNE--IYEKAVKILET 495
            + ++ +      +    A+  + A+ + E +G+EK+  +    N        A  +L+T
Sbjct: 417 EDTVISILNTINEV---IAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQT 473

Query: 496 YWLEED 501
            W  ++
Sbjct: 474 IWGYKE 479

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 85.0 bits (209), Expect = 1e-17
 Identities = 34/239 (14%), Positives = 69/239 (28%), Gaps = 41/239 (17%)

Query: 68  NLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLM 127
           N    L +L   V       +    EA            +   E + Q  VV  ++  L 
Sbjct: 260 NCVCLLRNLSYQVHRE-IPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLK 318

Query: 128 REDYPQLQFEAAWALTNIASGT----SENTKVVIDHGAVPIFVKLLASPSDDVREQAVWA 183
               P +   +A A+ N+ +G           +    A+     LL +  + V + A  A
Sbjct: 319 ESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGA 378

Query: 184 LGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVR 243
           L N+A D+      ++ + A+  L+  L                                
Sbjct: 379 LRNLAVDARNKE--LIGKHAIPNLVKNLPG------------------------------ 406

Query: 244 PALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSV 302
                      +  E+ +      ++ +     +  + + E     +LV +    + S 
Sbjct: 407 ----GQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSE 461

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  164 bits (416), Expect = 7e-47
 Identities = 39/238 (16%), Positives = 81/238 (34%), Gaps = 3/238 (1%)

Query: 114 IQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPS 173
           + S  +P       +    Q +  A   L ++              G   +  + L + +
Sbjct: 36  VLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGA 95

Query: 174 DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG 233
             +R +A   +G  + +    ++ VL  GAL  LL  L+  A  ++   A + +S   R 
Sbjct: 96  AGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVRE 155

Query: 234 KPQPPFDQVR-PALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 292
           +       +R      L + +    +++   + + L  L  G  +    +   G+  +LV
Sbjct: 156 QEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLV 215

Query: 293 ELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEAC 350
            L+           L  + ++VT      +          L  LL H  +   + E  
Sbjct: 216 ALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE--PELGLEELLRHRCQLLQQHEEY 271

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  143 bits (362), Expect = 4e-39
 Identities = 43/264 (16%), Positives = 96/264 (36%), Gaps = 9/264 (3%)

Query: 243 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSV 302
           +P  P   +   + D++    A   L+ L +  ++       +G+   +   L   +  +
Sbjct: 39  QPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGL 98

Query: 303 LIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD 362
              A + +G          + ++  GAL  LL LL      +++ +A + IS +      
Sbjct: 99  RWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEA 158

Query: 363 QIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDL 422
            +   +       L+  +Q     +K ++A+ + N   G   E    L   G ++ L  L
Sbjct: 159 GLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHP-EHKGTLCSMGMVQQLVAL 217

Query: 423 FVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDN 482
                       L  L +++   +  + +           +L+       + + LQ H+ 
Sbjct: 218 VRTEHSPFHEHVLGALCSLVT--DFPQGVRECREPELGLEELLR-----HRCQLLQQHEE 270

Query: 483 N-EIYEKAVKILETYWLEEDDETI 505
             E  E   K+L+T +    D+++
Sbjct: 271 YQEELEFCEKLLQTCFSSPADDSM 294

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 90.9 bits (225), Expect = 2e-20
 Identities = 22/176 (12%), Positives = 60/176 (34%), Gaps = 3/176 (1%)

Query: 85  SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTN 144
           +  + L+  A            +   E+V+  G + + +  L R+    ++ +A +A++ 
Sbjct: 93  AGAAGLRWRAAQLIGTCSQNV-AAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISC 151

Query: 145 IASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGAL 204
           +           +      + ++ +      ++ ++ + L N+    P  +  + S G  
Sbjct: 152 LVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM- 210

Query: 205 IPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEV 260
           +  L  L          +    L +     PQ    + R     L +L+    + +
Sbjct: 211 VQQLVALVRTEHSPFHEHVLGALCSLVTDFPQ-GVRECREPELGLEELLRHRCQLL 265

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  162 bits (411), Expect = 5e-43
 Identities = 61/466 (13%), Positives = 140/466 (30%), Gaps = 60/466 (12%)

Query: 88  SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS 147
            S    A+    ++         +       +  +++  +     + +     A+T + +
Sbjct: 218 GSSSTIASVCLARIYENMYYDEAKARFTD-QIDEYIKDKLLAPDMESKVRVTVAITALLN 276

Query: 148 GTSE-NTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIP 206
           G  +   +VV   G + + + +  +  +  +  A   L   +         +  QG  + 
Sbjct: 277 GPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKD-KAKALCEQG--VD 333

Query: 207 LLAQLNERAKLSMLRNATWTLSNFC-----RGKPQPPFDQVRPALPALAQ---LVHSNDE 258
           +L +L       +   A   L             +P  D     L    +   +    D+
Sbjct: 334 ILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDK 393

Query: 259 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 318
           ++   A   L+YL+     K + + +      L++L    + S L   + T  N+    +
Sbjct: 394 DIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYE 453

Query: 319 FQT--------------------------------QCIITYGALPYLLGLLTHSHKKSIK 346
            Q                                   +   G    L  L       + +
Sbjct: 454 KQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTES-HNSQ 512

Query: 347 KEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISN-ATSGGTHE 405
           +     ++ +  G ++    V+  G V  L+ +        K+ A  A++    +     
Sbjct: 513 ELIARVLNAV-CGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEV 571

Query: 406 QIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLV 465
                     I+PL +L            L+     L+  E+   +    +      Q +
Sbjct: 572 SFSGQRSLDVIRPLLNL------------LQQDCTALENFESLMALTNLASMNESVRQRI 619

Query: 466 EEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDDETIAAGDGP 511
            + +G+ KIE     D+  +   A + L    + ED   +  G+  
Sbjct: 620 IKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNND 665

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  148 bits (375), Expect = 3e-38
 Identities = 64/496 (12%), Positives = 135/496 (27%), Gaps = 94/496 (18%)

Query: 44  SLLKKRREGLQSQQFPPPAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLS 103
            L K    G Q     P    + L L                 D  ++  A       L+
Sbjct: 353 GLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKP----GKDKDIRRWAADGLA-YLT 407

Query: 104 IERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGT-------------- 149
           ++     + +     +   ++     +     +       N+ +                
Sbjct: 408 LDAECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYEKQEMLPEMIELAK 466

Query: 150 ------------------SENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS 191
                             ++   V+ + G       L  + S + +E     L  V G  
Sbjct: 467 FAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL- 525

Query: 192 PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRP--ALPA 248
              R  V+ +G +  LL    E  +    R+AT  L+       P+  F   R    +  
Sbjct: 526 KELRGKVVQEGGVKALLRMALEGTEKGK-RHATQALARIGITINPEVSFSGQRSLDVIRP 584

Query: 249 LAQLVHSNDEEVLT-DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPAL 307
           L  L+  +   +   ++  AL+ L+       Q +I+     ++   L      +     
Sbjct: 585 LLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYL----- 639

Query: 308 RTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAV 367
                                                  + A   + N+           
Sbjct: 640 --------------------------------------TRAAAQCLCNLVMSEDVIKMFE 661

Query: 368 IDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPD 427
            +   V  L  L ++ + +     A A++  TS       K L     +  L  L   P 
Sbjct: 662 GNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPS 721

Query: 428 PRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYE 487
           P +    +  + N++    A + +     +      ++E   GL ++ +       E+  
Sbjct: 722 PAVQHRGIVIILNMI---NAGEEIAKKLFE----TDIMELLSGLGQLPDDTRAKAREVAT 774

Query: 488 KAVKILETYWLEEDDE 503
           + +   E Y + E  +
Sbjct: 775 QCLAAAERYRIIERSD 790

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 89.9 bits (222), Expect = 5e-19
 Identities = 34/233 (14%), Positives = 77/233 (33%), Gaps = 4/233 (1%)

Query: 63  PASNLNLQTKLESLPAMVAGVWSDDSSLQ-LEATTQFRKLLSIERSPPIEEVIQSGVVPR 121
           P  + + Q  L+ +  ++  +  D ++L+  E+      L S+  +  + + I       
Sbjct: 569 PEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASM--NESVRQRIIKEQGVS 626

Query: 122 FVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAV 181
            +E+ + ED+  L   AA  L N+            ++  V     L     ++      
Sbjct: 627 KIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACA 686

Query: 182 WALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQ 241
            AL  +   S +C + +L+  + + +L  L      ++       + N      +     
Sbjct: 687 GALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKL 746

Query: 242 VRP-ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE 293
                +  L+ L    D+        A   L+     +I    +    P +  
Sbjct: 747 FETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRIIERSDNAEIPDVFA 799

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score =  142 bits (360), Expect = 1e-39
 Identities = 38/214 (17%), Positives = 66/214 (30%), Gaps = 20/214 (9%)

Query: 119 VPRFVEFLMRED-YPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVR 177
           + R V  L  +   P     AA  + +     SE  K V     +   ++LL   ++DV+
Sbjct: 10  LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69

Query: 178 EQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP 237
                AL N+  +    +  V     +  LL  L +   L   +  T  L N        
Sbjct: 70  RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK 129

Query: 238 PFDQVRPALPALAQLV----------------HSNDEEVLTDACWALSYLSDGTNDKIQA 281
               +  AL  L + +                   D ++  +    L  +S    D  +A
Sbjct: 130 N-LMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKA 188

Query: 282 VIEA-GVCPRLVELLGHPSPSVLIPALRTVGNIV 314
           +    G+   LV  +            +   N V
Sbjct: 189 MRRCDGLIDSLVHYVRGTIADYQPDD-KATENCV 221

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 94.6 bits (235), Expect = 3e-22
 Identities = 29/202 (14%), Positives = 70/202 (34%), Gaps = 24/202 (11%)

Query: 241 QVRPALPALAQLVHSND--EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP 298
            +   L     ++ ++      ++ A   + +     ++  + V +     +L++LL   
Sbjct: 5   DMEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ 64

Query: 299 SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358
           +  V       + N+V  D+     +     +P LL +L  +     KK+    + N+++
Sbjct: 65  NEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS 124

Query: 359 GNRDQIQAVIDAGLVGPLVNLL----------------QNAEFDIKKEAAWAISNATSGG 402
              D+++ ++    +  L   +                   +FDI       + N +S G
Sbjct: 125 N--DKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAG 182

Query: 403 THEQIKYLVRE--GCIKPLCDL 422
                +  +R   G I  L   
Sbjct: 183 --ADGRKAMRRCDGLIDSLVHY 202

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 62.3 bits (151), Expect = 3e-11
 Identities = 31/207 (14%), Positives = 61/207 (29%), Gaps = 43/207 (20%)

Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ 135
           +  ++  +   +  +Q       R  L  E +    EV +   VPR ++ L +    + +
Sbjct: 54  ILKLLQLLKVQNEDVQRAVCGALR-NLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETK 112

Query: 136 FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR 195
            +    L N++S   +  K ++   A+    + +  P       + W  G+         
Sbjct: 113 KQITGLLWNLSSN--DKLKNLMITEALLTLTENIIIPF------SGWPEGD--------- 155

Query: 196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRP---ALPALAQL 252
                         + N      +  N T  L N            +R     + +L   
Sbjct: 156 ------------YPKANGLLDFDIFYNVTGCLRNMSSAGADGR-KAMRRCDGLIDSLVHY 202

Query: 253 VHSNDEEVLTDA-------C--WALSY 270
           V     +   D        C    LSY
Sbjct: 203 VRGTIADYQPDDKATENCVCILHNLSY 229

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 90.5 bits (224), Expect = 1e-20
 Identities = 45/241 (18%), Positives = 86/241 (35%), Gaps = 27/241 (11%)

Query: 74  ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ 133
             L  ++  +  D  ++   A      ++ I ++      +   ++ +    L + +   
Sbjct: 32  SVLKKLIELLDDDLWTVVKNA---ISIIMVIAKTRE---DLYEPMLKKLFSLLKKSEAIP 85

Query: 134 LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR 193
           L  E A A   +A    E  K +I     P+         +  +    +AL  +A  +P 
Sbjct: 86  LTQEIAKAFGQMAKEKPELVKSMI-----PVLFANYRIGDEKTKINVSYALEEIAKANPM 140

Query: 194 CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLV 253
               ++     + +L+  N   KL+ L        NF     +  F  V P LP +  L+
Sbjct: 141 LMASIVRD--FMSMLSSKNREDKLTAL--------NFIEAMGENSFKYVNPFLPRIINLL 190

Query: 254 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 313
           H  DE V   A  AL +L+   +   + VI      + +E L   S  V       +  +
Sbjct: 191 HDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGISRL 244

Query: 314 V 314
           +
Sbjct: 245 L 245

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 71.3 bits (174), Expect = 5e-14
 Identities = 31/201 (15%), Positives = 72/201 (35%), Gaps = 20/201 (9%)

Query: 118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVR 177
           V+ + +E L  +D   +   A   +  IA    +  + ++      +F  L  S +  + 
Sbjct: 33  VLKKLIELL-DDDLWTVVKNAISIIMVIAKTREDLYEPMLK----KLFSLLKKSEAIPLT 87

Query: 178 EQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP 237
           ++   A G +A + P          ++IP+L             N ++ L    +  P  
Sbjct: 88  QEIAKAFGQMAKEKPELVK------SMIPVLFANYRIGDEKTKINVSYALEEIAKANP-- 139

Query: 238 PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH 297
               +   +     ++ S + E    A   +  + + +   +   +     PR++ LL  
Sbjct: 140 --MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFL-----PRIINLLHD 192

Query: 298 PSPSVLIPALRTVGNIVTGDD 318
               V   A+  + ++ T +D
Sbjct: 193 GDEIVRASAVEALVHLATLND 213

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 75.7 bits (185), Expect = 2e-14
 Identities = 68/486 (13%), Positives = 154/486 (31%), Gaps = 144/486 (29%)

Query: 61  PAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 120
            A   N + +   +   ++++    D   +  +A +   +L     S   EE++Q     
Sbjct: 27  DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ-EEMVQ----- 80

Query: 121 RFVEFLMREDYPQLQFEAAWALTNIAS---GTSENTKVVID-----HGAVPIFVKLLASP 172
           +FVE ++R +Y        + ++ I +     S  T++ I+     +    +F K     
Sbjct: 81  KFVEEVLRINYK-------FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY---- 129

Query: 173 SDDV-REQAVWALGNVAGDSPRCRDLVLSQG-------ALIPLLAQLNERAKLSMLRNAT 224
             +V R Q    L     +    +++++  G        +   +   + + +  M     
Sbjct: 130 --NVSRLQPYLKLRQALLELRPAKNVLI-DGVLGSGKTWVALDVCL-SYKVQCKMDFKIF 185

Query: 225 W-TLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEE--VLTDACWALSYLSDGTNDKIQA 281
           W  L N C        +     L  L +L++  D      +D    +         +++ 
Sbjct: 186 WLNLKN-C--------NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR- 235

Query: 282 VIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH 341
                   RL++   + +  +L+  L  V N    + F   C I          LLT   
Sbjct: 236 --------RLLKSKPYEN-CLLV--LLNVQNAKAWNAFNLSCKI----------LLT--- 271

Query: 342 KKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSG 401
                     T        R   + V D       ++        +           +  
Sbjct: 272 ----------T--------RF--KQVTDF------LSAATTTHISLDHH--------SMT 297

Query: 402 GTHEQ-----IKYL-VREGCIKP-LCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTA 454
            T ++     +KYL  R   +   +       +PR +++          + E+ ++   A
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTT----NPRRLSI----------IAESIRDG-LA 342

Query: 455 TADVNQYAQLVEEAEGLEK-IENLQSHDNNEIYE------KAVKI----LETYWLE---E 500
           T D  ++    +    +E  +  L+  +  ++++       +  I    L   W +    
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402

Query: 501 DDETIA 506
           D   + 
Sbjct: 403 DVMVVV 408

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.0 bits (160), Expect = 2e-11
 Identities = 90/606 (14%), Positives = 172/606 (28%), Gaps = 191/606 (31%)

Query: 5   PNARAEVRR----------NRYKVAVDADEGRRRREDN----MVEIRKNKREESLLKKR- 49
            +A +   R             +  V+          N    M  I+  +R+ S++ +  
Sbjct: 58  KDAVSGTLRLFWTLLSKQEEMVQKFVEEVL-----RINYKFLMSPIKTEQRQPSMMTRMY 112

Query: 50  ---REGLQS--QQFPP---PAPASNLNLQTKLESL-PA-------MVAGVWSDDSSLQLE 93
              R+ L +  Q F           L L+  L  L PA       +  G  S  + + L+
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV-LG--SGKTWVALD 169

Query: 94  ATTQFRKLLSIERSPPIEEVIQSGVVPRFVEF---LMREDYPQLQFEAAWALTNIASG-- 148
                        S  ++  +   +      F   L   + P+   E    L        
Sbjct: 170 VC----------LSYKVQCKMDFKI------FWLNLKNCNSPETVLEMLQKLLYQIDPNW 213

Query: 149 -----TSENTKVVIDHGAVPIFVKLLASPS--------DDVREQAVWALGNVAGDSPRCR 195
                 S N K+ I H       +LL S           +V+    W   N+      C+
Sbjct: 214 TSRSDHSSNIKLRI-HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL-----SCK 267

Query: 196 DLVLSQGA---------------LIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ--PP 238
            L+ ++                 L      L      S+L             +PQ  P 
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC-------RPQDLPR 320

Query: 239 FDQVRPALP-ALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGV---CP----R 290
             +V    P  L+ +  S  + + T   W          DK+  +IE+ +    P    +
Sbjct: 321 --EVLTTNPRRLSIIAESIRDGLAT---W--DNWKHVNCDKLTTIIESSLNVLEPAEYRK 373

Query: 291 LVELLGHPSPSVLIPA--L---------RTVGNIVTGDDFQTQCII-------TYGALPY 332
           + + L    PS  IP   L           V  +V  +      ++       T      
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV--NKLHKYSLVEKQPKESTISIPSI 431

Query: 333 LLGLLTHS------HKKSI---KKEACWTISNITAGNRDQ---------IQAVIDAGLVG 374
            L L          H+  +        +   ++     DQ         ++ +     + 
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491

Query: 375 PLVNLLQNAEF-DIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDL-----FVCPDP 428
               +  +  F + K        NA+    +              L  L     ++C + 
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSILNT-------------LQQLKFYKPYICDND 538

Query: 429 RIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEK 488
                 +  + + L   + E+N+  +     +Y  L+  A        L   ++  I+E+
Sbjct: 539 PKYERLVNAILDFLP--KIEENLICS-----KYTDLLRIA--------LM-AEDEAIFEE 582

Query: 489 AVKILE 494
           A K ++
Sbjct: 583 AHKQVQ 588

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 69.7 bits (171), Expect = 7e-14
 Identities = 46/249 (18%), Positives = 75/249 (30%), Gaps = 56/249 (22%)

Query: 158 DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKL 217
           D   V +++K L   S  VR  A +ALG +     R  +       LI  L   +   + 
Sbjct: 17  DPEKVEMYIKNLQDDSYYVRRAAAYALGKIG--DERAVE------PLIKALKDEDAWVR- 67

Query: 218 SMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTND 277
              R A   L                 A+  L + +   D  V   A  AL  + D    
Sbjct: 68  ---RAAADALGQI----------GDERAVEPLIKALKDEDGWVRQSAAVALGQIGD---- 110

Query: 278 KIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLL 337
             +  +E      L++ L      V I A   +G I  GD+          A+  L+  L
Sbjct: 111 --ERAVEP-----LIKALKDEDWFVRIAAAFALGEI--GDE---------RAVEPLIKAL 152

Query: 338 THSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISN 397
                  +++ A   +  I               +   +  L +      +K A   +  
Sbjct: 153 KDED-GWVRQSAADALGEIG-----------GERVRAAMEKLAETGTGFARKVAVNYLET 200

Query: 398 ATSGGTHEQ 406
             S   H  
Sbjct: 201 HKSFNHHHH 209

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 65.5 bits (160), Expect = 2e-12
 Identities = 46/245 (18%), Positives = 77/245 (31%), Gaps = 57/245 (23%)

Query: 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVRE 178
           V  +++ L  +    ++  AA+AL  I            D  AV   +K L      VR 
Sbjct: 21  VEMYIKNLQDDS-YYVRRAAAYALGKIG-----------DERAVEPLIKALKDEDAWVRR 68

Query: 179 QAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP 238
            A  ALG +  +            A+ PL+  L +     + ++A   L     G  +  
Sbjct: 69  AAADALGQIGDER-----------AVEPLIKALKDEDGW-VRQSAAVALGQI--GDER-- 112

Query: 239 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP 298
                 A+  L + +   D  V   A +AL  + D      +AV        L++ L   
Sbjct: 113 ------AVEPLIKALKDEDWFVRIAAAFALGEIGD-----ERAV------EPLIKALKDE 155

Query: 299 SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358
              V   A   +G I  G +              +  L         +K A   +    +
Sbjct: 156 DGWVRQSAADALGEI--GGE---------RVRAAMEKLAETGT-GFARKVAVNYLETHKS 203

Query: 359 GNRDQ 363
            N   
Sbjct: 204 FNHHH 208

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 20/91 (21%)

Query: 118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVR 177
            V   ++ L +++   ++  AA+AL  I            D  AV   +K L      VR
Sbjct: 113 AVEPLIKAL-KDEDWFVRIAAAFALGEIG-----------DERAVEPLIKALKDEDGWVR 160

Query: 178 EQAVWALGNVAGDSPRCRDLVLSQGALIPLL 208
           + A  ALG + G+          + A+  L 
Sbjct: 161 QSAADALGEIGGER--------VRAAMEKLA 183

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 73.3 bits (179), Expect = 8e-14
 Identities = 53/399 (13%), Positives = 122/399 (30%), Gaps = 31/399 (7%)

Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQS---GVVPRFVEFLMREDYP 132
           LP + + + S+D +    A    +K+          +V+      ++P+F++F      P
Sbjct: 130 LPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSS-P 188

Query: 133 QLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP 192
           +++  A   +       ++   + ID   +     L      +VR+    AL  +     
Sbjct: 189 KIRSHAVACVNQFIISRTQALMLHIDS-FIENLFALAGDEEPEVRKNVCRALVMLLEVRM 247

Query: 193 RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF--DQVRPALPALA 250
               L+     ++  + Q  +    ++   A                    +   +P L 
Sbjct: 248 D--RLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLV 305

Query: 251 QLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAG------------------VCPRLV 292
             +  +D +++                    + +                    + P L 
Sbjct: 306 NGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLK 365

Query: 293 ELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWT 352
           ELL H    V    +  +G I  G        +    +P+L+  L+      ++   CWT
Sbjct: 366 ELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPE-LIPHLIQCLSDKKAL-VRSITCWT 423

Query: 353 ISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVR 412
           +S        Q        L+  L+  + ++   +++ A  A +        E + YL  
Sbjct: 424 LSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL-- 481

Query: 413 EGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNM 451
              +  L   F     + + +  + +  +        N 
Sbjct: 482 AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNK 520

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 54.8 bits (131), Expect = 5e-08
 Identities = 38/236 (16%), Positives = 78/236 (33%), Gaps = 16/236 (6%)

Query: 85  SDDSSLQLEATTQFRKLLS---IERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWA 141
           S+D   +  +    +  +          + + I+S  +       + +  P ++      
Sbjct: 59  SEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLN-----NIGDSSPLIRATVGIL 113

Query: 142 LTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD---LV 198
           +T IAS              +P    LL S   +  E A  AL  +  DS    D   L 
Sbjct: 114 ITTIASKGELQNW----PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLD 169

Query: 199 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDE 258
                +IP   Q  + +   +  +A   ++ F   + Q     +   +  L  L    + 
Sbjct: 170 RPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEP 229

Query: 259 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV 314
           EV  + C AL  L +   D++   +   +   +++       +V + A      + 
Sbjct: 230 EVRKNVCRALVMLLEVRMDRLLPHMHN-IVEYMLQRTQDQDENVALEACEFWLTLA 284

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 44.8 bits (105), Expect = 6e-05
 Identities = 44/339 (12%), Positives = 98/339 (28%), Gaps = 36/339 (10%)

Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLSIERS---PPIEEVIQSGVVPRFVEFLMREDYP 132
           +  + A    ++  ++         LL +      P +  +++      ++    ++   
Sbjct: 217 IENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVE------YMLQRTQDQDE 270

Query: 133 QLQFEAAWALTNIA-SGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS 191
            +  EA      +A     ++  V      +P+ V  +     D+        G   GD 
Sbjct: 271 NVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDD 330

Query: 192 PRCRDLVLSQGA-LIPLLAQLNERAKL--------SMLRNATW--------TLSNFCRGK 234
                 +    A  + +LA +     L         +L +  W         L     G 
Sbjct: 331 TISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGC 390

Query: 235 PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 294
            Q     +   +P L Q +      V +  CW LS  +     +        +   L++ 
Sbjct: 391 MQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKR 450

Query: 295 LGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH---SHKKSIKKEACW 351
           +   +  V   A      +    +     ++ Y  L Y+L  L      ++         
Sbjct: 451 ILDSNKRVQEAACSAFATLE---EEACTELVPY--LAYILDTLVFAFSKYQHKNLLILYD 505

Query: 352 TISNI-TAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKK 389
            I  +  +      +      L+ PL+      + + K 
Sbjct: 506 AIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKD 544

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 69.8 bits (171), Expect = 2e-13
 Identities = 36/297 (12%), Positives = 81/297 (27%), Gaps = 65/297 (21%)

Query: 101 LLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG 160
           L +  +    +E+ +          L+ +     +  +A  L                  
Sbjct: 16  LYNQCKKLNDDELFR----------LLDDHNSLKRISSARVLQLRG-----------GQD 54

Query: 161 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSML 220
           AV + ++  +  +   R+   + LG +     +C D V +      L           + 
Sbjct: 55  AVRLAIEFCSDKNYIRRDIGAFILGQI-KICKKCEDNVFN-----ILNNMALNDKSACVR 108

Query: 221 RNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQ 280
             A  + +  C+  P          +             V     +A+S ++D       
Sbjct: 109 ATAIESTAQRCKKNPIYS----PKIVEQSQITAFDKSTNVRRATAFAISVIND------- 157

Query: 281 AVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS 340
                   P L+ LL  P+  V   A   +      +                + +L   
Sbjct: 158 ----KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK 204

Query: 341 HKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISN 397
           + + ++ EA   +S              D  ++  L + L+     +  +   A   
Sbjct: 205 N-EEVRIEAIIGLSYRK-----------DKRVLSVLCDELKKN--TVYDDIIEAAGE 247

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 56.3 bits (136), Expect = 6e-09
 Identities = 29/267 (10%), Positives = 65/267 (24%), Gaps = 52/267 (19%)

Query: 175 DVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 234
             + +A    G          D       L  LL   N   +     ++   L       
Sbjct: 5   YQKRKASKEYGLYNQCKKLNDD------ELFRLLDDHNSLKR----ISSARVLQLR---- 50

Query: 235 PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 294
                   + A+    +     +        + L  +        +   +          
Sbjct: 51  ------GGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC-----KKCEDNVFNILNNMA 99

Query: 295 LGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTIS 354
           L   S  V   A+ +       +   +        +             ++++   + IS
Sbjct: 100 LNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDKST-NVRRATAFAIS 153

Query: 355 NITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREG 414
            I            D   +  L+NLL++   D++  AA+AI+                  
Sbjct: 154 VIN-----------DKATIPLLINLLKDPNGDVRNWAAFAININKYDN----------SD 192

Query: 415 CIKPLCDLFVCPDPRIVTVCLEGLENI 441
                 ++    +  +    + GL   
Sbjct: 193 IRDCFVEMLQDKNEEVRIEAIIGLSYR 219

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 50.2 bits (120), Expect = 7e-07
 Identities = 33/189 (17%), Positives = 61/189 (32%), Gaps = 42/189 (22%)

Query: 101 LLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG 160
           + S  +      +    +V +       +    ++   A+A++ I            D  
Sbjct: 112 IESTAQRCKKNPIYSPKIVEQSQITA-FDKSTNVRRATAFAISVIN-----------DKA 159

Query: 161 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSML 220
            +P+ + LL  P+ DVR  A +A+     D+   RD        + +L   NE  +    
Sbjct: 160 TIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRD------CFVEMLQDKNEEVR---- 209

Query: 221 RNATWTLSNFCRGKPQPPF------DQVRP-------------ALPALAQLV-HSNDEEV 260
             A   LS     +           + V                LP L  ++   +D E+
Sbjct: 210 IEAIIGLSYRKDKRVLSVLCDELKKNTVYDDIIEAAGELGDKTLLPVLDTMLYKFDDNEI 269

Query: 261 LTDACWALS 269
           +T A   L 
Sbjct: 270 ITSAIDKLK 278

>1qgk_B Protein (importin alpha-2 subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.50A {Homo sapiens} Length = 44

 Score = 60.9 bits (148), Expect = 2e-12
 Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 12 RRNRYK-VAVDADEGRRRREDNMVEIRKNKREESLLKKRR 50
          R +R+K    D+ E RRRR +  VE+RK K+++ +LK+R 
Sbjct: 3  RLHRFKNKGKDSTEMRRRRIEVNVELRKAKKDDQMLKRRN 42

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 60.2 bits (145), Expect = 1e-09
 Identities = 46/312 (14%), Positives = 106/312 (33%), Gaps = 34/312 (10%)

Query: 112 EVIQSGVVPRFVEFL---MREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKL 168
           +   + ++   +EF+   +  D  + +  A  A  +I  G  +  +    H A+P  + L
Sbjct: 360 QNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNL 419

Query: 169 LASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLS--MLRNATWT 226
           +   S  V+E   W +G +A       + +  Q  L  ++       +    +  N +WT
Sbjct: 420 MNDQSLQVKETTAWCIGRIADS---VAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWT 476

Query: 227 LSNFCRGKPQPPFDQVRPALPA-LAQLVHS-----NDEEVLTDACWALSYLSDGTNDKIQ 280
           + N      +     +    PA +  L+ +     N+      A  AL+ + +   D + 
Sbjct: 477 IINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVA 536

Query: 281 AVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGA----------- 329
               + +   +++ LG      +     T+ +  +  + Q+  +    A           
Sbjct: 537 ETSAS-ISTFVMDKLGQTMS--VDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEP 593

Query: 330 -----LPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAE 384
                +     LL       I+ +  + IS + A      +  ++      L+  L   +
Sbjct: 594 VADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLET-FSPYLLKALNQVD 652

Query: 385 FDIKKEAAWAIS 396
             +   A   I+
Sbjct: 653 SPVSITAVGFIA 664

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 59.4 bits (143), Expect = 2e-09
 Identities = 50/350 (14%), Positives = 101/350 (28%), Gaps = 30/350 (8%)

Query: 76  LPAMVAGVWSDDSS--LQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ 133
           L A+V G  S ++S  ++L A       L   ++    E  ++ ++    E    ED  +
Sbjct: 181 LIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAED-IE 239

Query: 134 LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR 193
           +Q  A   L  I S      K  ++     + +  + SP+D V    V     +  +   
Sbjct: 240 VQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEID 299

Query: 194 CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSN-------------------FCRGK 234
               +                +   ++ N    L+                         
Sbjct: 300 IAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFA 359

Query: 235 PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 294
                  + P L  + Q + +++      A  A   + DG +   +        P ++ L
Sbjct: 360 QNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNL 419

Query: 295 LGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH-SHKKSIKKEACWTI 353
           +   S  V       +G I                   +   L        +     WTI
Sbjct: 420 MNDQSLQVKETTAWCIGRIAD--SVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTI 477

Query: 354 SNITAGNRDQIQAVIDAGLVGPLVNLLQ-----NAEFDIKKEAAWAISNA 398
            N+     +   + I       +  L+      + EF+ +  A  A++  
Sbjct: 478 INLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTM 527

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 36/220 (16%), Positives = 62/220 (28%), Gaps = 55/220 (25%)

Query: 74  ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSG---------------- 117
           E +   +  +  D   ++  A     K+       P+ + ++                  
Sbjct: 14  EKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIG 73

Query: 118 ---VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSD 174
               V   ++ L  ED   ++  AA AL  I            D  AV   +K L     
Sbjct: 74  DERAVEPLIKALKDED-GWVRQSAAVALGQIG-----------DERAVEPLIKALKDEDW 121

Query: 175 DVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLR-NATWTLSNFCRG 233
            VR  A +ALG +  +            A+ PL+  L +      +R +A   L      
Sbjct: 122 FVRIAAAFALGEIGDER-----------AVEPLIKALKDED--GWVRQSAADALGEI--- 165

Query: 234 KPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSD 273
                         A+ +L  +        A   L     
Sbjct: 166 -------GGERVRAAMEKLAETGTGFARKVAVNYLETHKS 198

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 45/281 (16%), Positives = 79/281 (28%), Gaps = 99/281 (35%)

Query: 161 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSML 220
            V +++K L   S  VR  A +A                        L ++ +       
Sbjct: 15  KVEMYIKNLQDDSYYVRRAAAYA------------------------LGKIGDER----- 45

Query: 221 RNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQ 280
                                   A+  L + +   D  V   A  AL  + D      +
Sbjct: 46  ------------------------AVEPLIKALKDEDAWVRRAAADALGQIGD------E 75

Query: 281 AVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS 340
             +E      L++ L      V   A   +G I  GD+          A+  L+  L   
Sbjct: 76  RAVEP-----LIKALKDEDGWVRQSAAVALGQI--GDE---------RAVEPLIKALKDE 119

Query: 341 HKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS 400
               ++  A + +  I            D   V PL+  L++ +  +++ AA A+     
Sbjct: 120 DW-FVRIAAAFALGEIG-----------DERAVEPLIKALKDEDGWVRQSAADAL----- 162

Query: 401 GGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENI 441
                +I     E     +  L          V +  LE  
Sbjct: 163 ----GEIGG---ERVRAAMEKLAETGTGFARKVAVNYLETH 196

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 58.2 bits (139), Expect = 6e-09
 Identities = 39/326 (11%), Positives = 108/326 (33%), Gaps = 21/326 (6%)

Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLS----IERSPPIEEVIQSGVVPRFVEFLMREDY 131
           +  +   + SD   L+  ++   + ++           +   +   +  R    + +++ 
Sbjct: 88  VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED 147

Query: 132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS 191
             +Q EA   + ++ S       V      +   +  L SP   VR++ + ALG++    
Sbjct: 148 VSVQLEALDIMADMLS-RQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLV--- 203

Query: 192 PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQ 251
             C ++V     +  LL++L++   +S  R     ++   R       + +   +P + +
Sbjct: 204 MSCGNIVFVD-LIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVK 262

Query: 252 LVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVG 311
             + +D+E+      A          ++   +   +   L  L   P+            
Sbjct: 263 FCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPN---------YNY 313

Query: 312 NIVTGDDFQTQCIITYGALPYLLGLLTHSHKKS--IKKEACWTISNITAGNRDQIQAVID 369
           +    D+                   +     S  +++ A   +  + +   + +     
Sbjct: 314 DDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYK 373

Query: 370 AGLVGPLVNLLQNAEFDIKKEAAWAI 395
             +   L++  +  E ++K +   A 
Sbjct: 374 T-VSPALISRFKEREENVKADVFHAY 398

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 50.5 bits (119), Expect = 1e-06
 Identities = 37/282 (13%), Positives = 93/282 (32%), Gaps = 25/282 (8%)

Query: 76   LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ 135
            L  +   V+S  ++L  + +           +    +   + V     +         ++
Sbjct: 776  LRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIR 835

Query: 136  FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR 195
              A  +L  +      + ++ +      + ++  +SPS++V+  A +ALG+++  +    
Sbjct: 836  LLALLSLGEVGHHIDLSGQLELKS----VILEAFSSPSEEVKSAASYALGSISVGNLPE- 890

Query: 196  DLVLSQGALIPLLAQLNERAKLS-MLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH 254
                    L  +L ++  + K   +L ++   + +        P+  V      L +   
Sbjct: 891  -------YLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPY--VENIWALLLKHCE 941

Query: 255  SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV 314
              +E         L         K+  +    + PRL   L   S       +  V   +
Sbjct: 942  CAEEGTRNVVAECLG--------KLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTI 993

Query: 315  TGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNI 356
            + D  Q    +    +   L  L      ++++ A  T ++ 
Sbjct: 994  S-DHPQPIDPLLKNCIGDFLKTLEDPD-LNVRRVALVTFNSA 1033

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 56.0 bits (134), Expect = 2e-08
 Identities = 58/414 (14%), Positives = 126/414 (30%), Gaps = 48/414 (11%)

Query: 58  FP-PPAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQS 116
           +P      S + L   L  L      V+ +      +      +LLS      I+E +++
Sbjct: 240 YPSLTTLCSEIFLTKGLSKL--FKKRVFEEQDLQFTKELL---RLLSSA---CIDETMRT 291

Query: 117 GVVPRFVEFLMRE-DYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDD 175
            +   +++ L R  +   +Q  +A  L    S T      +       IF+  ++     
Sbjct: 292 YITENYLQLLERSLNVEDVQIYSALVLVKTWSFTKLTCINLKQL--SEIFINAISRRIVP 349

Query: 176 VREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP 235
             E +V AL  ++  +     +  ++     LL  +  +     L      ++N      
Sbjct: 350 KVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPE 409

Query: 236 QPPFDQVRPALPALAQL-----VHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR 290
           +                           E             D      + ++   +   
Sbjct: 410 EXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKE--------DILLFNEKYILRTELISF 461

Query: 291 LVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH--SHKKSIKKE 348
           L   + + SP+     +R + NI    +F  Q +   GA+  +L  L +     + I+  
Sbjct: 462 LKREMHNLSPNCKQQVVRIIYNITRSKNFIPQ-LAQQGAVKIILEYLANKQDIGEPIRIL 520

Query: 349 ACWTISN--ITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKK--------------EAA 392
            C  ++   I        +       +  L  LL  +                    EA 
Sbjct: 521 GCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEAL 580

Query: 393 WAISNATSGGTHEQIK----YLVREGCIKPLCDLFVCPDPRIVTVCLEGLENIL 442
            A++N  S  T +  +     +  +     + +L +  +  +    LE + N++
Sbjct: 581 LALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMM 634

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 45.2 bits (106), Expect = 5e-05
 Identities = 29/175 (16%), Positives = 58/175 (33%), Gaps = 8/175 (4%)

Query: 87  DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIA 146
           D+   L A T      + +     + ++ + V    +E LM ++   LQ      ++N+ 
Sbjct: 575 DNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMM 634

Query: 147 SGTSENTKVVIDHG------AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLS 200
           S          +           I VKLL     + +        N+A   P     +L+
Sbjct: 635 SHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLT 694

Query: 201 QGALIPLLAQL--NERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLV 253
           +  LI    Q+  ++   + + +             P    ++V P L    +L 
Sbjct: 695 KKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLK 749

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 55.8 bits (134), Expect = 2e-08
 Identities = 61/384 (15%), Positives = 119/384 (30%), Gaps = 30/384 (7%)

Query: 64  ASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFV 123
           +   +          +V  +   D      +      +     S  ++  +       F 
Sbjct: 115 SHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAEL----RQYFR 170

Query: 124 EFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWA 183
             L  +D P ++  AA  L   A     +    +    +P+F  L +   D VR  AV A
Sbjct: 171 N-LCSDDTPMVRRAAASKLGEFAKVLELDN---VKSEIIPMFSNLASDEQDSVRLLAVEA 226

Query: 184 LGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVR 243
             N+A   P+     L    L       + R +  +        +     K   P     
Sbjct: 227 CVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADK----FTELQ--KAVGPEITKT 280

Query: 244 PALPALAQLVHSNDEEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELLGHPSPSV 302
             +PA   L+   + EV   A   +    +  + D  + VI + + P + EL+   +  V
Sbjct: 281 DLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHV 340

Query: 303 LIPALRTVGNIVT--GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360
                  +  +    G D   + +     LP  L  L       ++      ISN+   N
Sbjct: 341 KSALASVIMGLSPILGKDNTIEHL-----LPLFLAQLKDEC-PEVRLNI---ISNLDCVN 391

Query: 361 RDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLC 420
                  +   L+  +V L ++A++ ++      +         E     +   C+  L 
Sbjct: 392 EVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLV 451

Query: 421 DLFVCPDPRIVTVCLEGLENILKV 444
           D        I       L+ +++ 
Sbjct: 452 D----HVYAIREAATSNLKKLVEK 471

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Length = 265

 Score = 52.1 bits (124), Expect = 1e-07
 Identities = 35/215 (16%), Positives = 69/215 (32%), Gaps = 13/215 (6%)

Query: 69  LQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR 128
                 +L  ++     DD + +L A     ++L    S     V++   +  F+   + 
Sbjct: 28  ALEDKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLER-HLDVFIN-ALS 85

Query: 129 EDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALG--N 186
           ++  ++  +A  AL  +       +K  +   A    V LL SP D +R + +  L    
Sbjct: 86  QENEKVTIKALRALGYLVKDVPMGSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQ 143

Query: 187 VAGDSPRCRDLVLSQGALIPLLAQ------LNERAKLSMLRNATWTLSNFCRGKPQPPFD 240
              DS   R  +        L  +             S        + +      Q   +
Sbjct: 144 PLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNE 203

Query: 241 QVR-PALPALAQLVHSNDEEVLTDACWALSYLSDG 274
            +   AL  L + +     E +      +S + DG
Sbjct: 204 FIVELALDVLEKALSFPLLENVKIELLKISRIVDG 238

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963

 Score = 51.7 bits (123), Expect = 4e-07
 Identities = 31/167 (18%), Positives = 57/167 (34%), Gaps = 21/167 (12%)

Query: 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVRE 178
               +  ++  D   L++  A+ +    +GT  N+ V        +    ++  +DDVR 
Sbjct: 543 ADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVK------RLLHVAVSDSNDDVRR 596

Query: 179 QAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP 238
            AV ALG V                +  ++  L++     +     + L   C GK    
Sbjct: 597 AAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQS 647

Query: 239 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA 285
                 A+  L  L     + V   A  ALS +     +K+   +  
Sbjct: 648 ------AIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVAD 688

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 48.1 bits (115), Expect = 5e-07
 Identities = 22/144 (15%), Positives = 47/144 (32%), Gaps = 36/144 (25%)

Query: 126 LMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALG 185
            M ++   ++ + + AL+ +               A    ++ L++    +R  A W +G
Sbjct: 20  HMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIG 67

Query: 186 NVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLR-NATWTLSNFCRGKPQPPFDQVRP 244
           N              + A+ PL+  L + +    +R  A  +L     G  +        
Sbjct: 68  NFQ-----------DERAVEPLIKLLEDDS--GFVRSGAARSLEQI--GGER-------- 104

Query: 245 ALPALAQLVHSNDEEVLTDACWAL 268
              A+ +L  +        A   L
Sbjct: 105 VRAAMEKLAETGTGFARKVAVNYL 128

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 47.7 bits (114), Expect = 6e-07
 Identities = 24/153 (15%), Positives = 45/153 (29%), Gaps = 35/153 (22%)

Query: 243 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSV 302
              L      +   ++ V  D   ALS + D      +A         L+E L +    +
Sbjct: 11  SSGLVPRGSHMADENKWVRRDVSTALSRMGD------EAF------EPLLESLSNEDWRI 58

Query: 303 LIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD 362
              A   +GN    D+          A+  L+ LL       ++  A  ++  I      
Sbjct: 59  RGAAAWIIGNF--QDE---------RAVEPLIKLLEDDS-GFVRSGAARSLEQIG----- 101

Query: 363 QIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAI 395
                    +   +  L +      +K A   +
Sbjct: 102 ------GERVRAAMEKLAETGTGFARKVAVNYL 128

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 19/118 (16%), Positives = 42/118 (35%), Gaps = 25/118 (21%)

Query: 74  ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ 133
             L    + +  ++  ++ + +T   ++         E +++           +  +  +
Sbjct: 12  SGLVPRGSHMADENKWVRRDVSTALSRM----GDEAFEPLLE----------SLSNEDWR 57

Query: 134 LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS 191
           ++  AAW + N             D  AV   +KLL   S  VR  A  +L  + G+ 
Sbjct: 58  IRGAAAWIIGNFQ-----------DERAVEPLIKLLEDDSGFVRSGAARSLEQIGGER 104

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 12/68 (17%)

Query: 118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVR 177
            V   ++ L  +D   ++  AA +L  I                     KL  + +   R
Sbjct: 74  AVEPLIKLL-EDDSGFVRSGAARSLEQIG-----------GERVRAAMEKLAETGTGFAR 121

Query: 178 EQAVWALG 185
           + AV  L 
Sbjct: 122 KVAVNYLE 129

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651

 Score = 49.0 bits (116), Expect = 3e-06
 Identities = 44/345 (12%), Positives = 101/345 (29%), Gaps = 34/345 (9%)

Query: 98  FRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVI 157
              L+ + ++   +  I    +      +  ++  +++  +     ++ S  +E    + 
Sbjct: 62  MEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTE--IFIK 119

Query: 158 DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP-RCRDLVLSQGALIPLLAQLNERAK 216
               V + + LL      VR   V  L ++      + + ++L     +  L  L   ++
Sbjct: 120 QQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR 179

Query: 217 LSMLRNATWTLSNFCRGKPQPPFDQVRP-ALPALAQLVH----SNDEEVLTDACWALSYL 271
             +  +    L    R             A   L  ++     S+   V+ D    L  L
Sbjct: 180 EVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNL 239

Query: 272 SDGTNDKIQAVIEAGVCPRLVELLGHPSP---------SVLIPALRTVGNIVTGDDFQT- 321
               N       E     R+                  + L   L+ V  +V+ ++    
Sbjct: 240 LKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGA 299

Query: 322 -----QCIITYGALPYLLGLLTHSHK-KSIKKEACWTISNITAGNRDQIQ--AVIDAGLV 373
                + +   G L  L  +L  +     I  E   T+S +  G +      A ++A   
Sbjct: 300 TSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSN 359

Query: 374 GPLVNLLQN--------AEFDIKKEAAWAISNATSGGTHEQIKYL 410
            P   ++            F ++    +            Q + +
Sbjct: 360 PPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIV 404

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876

 Score = 46.4 bits (109), Expect = 2e-05
 Identities = 67/417 (16%), Positives = 135/417 (32%), Gaps = 52/417 (12%)

Query: 17  KVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPPPAPASNLNLQTKLESL 76
           +VA+   E      D  +++     E +  + R     S+ +   A      +    ++L
Sbjct: 274 EVALQGIEFWSNVCDEEMDLAIEASE-AAEQGRPPEHTSKFYAKGA--LQYLVPILTQTL 330

Query: 77  PAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQF 136
                    DD +    A      L +      +  V+       F++  ++    + + 
Sbjct: 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLP------FIKEHIKNPDWRYRD 384

Query: 137 EAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD 196
            A  A   I  G   +    +   A+P  ++L+  PS  VR+ A W +G +        +
Sbjct: 385 AAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL---LPE 441

Query: 197 LVLSQGALIPLLAQLNER--AKLSMLRNATWTLSNFCRGKP-----------------QP 237
             ++   L PLL  L E   A+  +  N  W  S+                         
Sbjct: 442 AAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSS 501

Query: 238 PFDQVRPALPALAQLVHSNDEEVLTDACWAL-SYLSDGTNDKIQAVIE--AGVCPRLVEL 294
            F+ +   L         +   + + A  +L   + +   D   AV +    +  RL ++
Sbjct: 502 SFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQV 561

Query: 295 LGHPSP--------------SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS 340
           L   S               S+L   L+ V   V   D      +   +L  L    + +
Sbjct: 562 LQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASL--LRMFQSTA 619

Query: 341 HKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN-AEFDIKKEAAWAIS 396
               ++++A   +S +      +    ++A     L   L+N AE+ +   A   + 
Sbjct: 620 GSGGVQEDALMAVSTLVEVLGGEFLKYMEA-FKPFLGIGLKNYAEYQVCLAAVGLVG 675

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	532
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.96
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.95
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.95
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.95
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.95
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.92
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.92
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.92
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.9
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.9
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.85
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.83
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.79
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.78
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.77
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.77
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.77
3grl_A	651	General vesicular transport factor P115; vesicle t	99.75
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.72
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.72
3grl_A	651	General vesicular transport factor P115; vesicle t	99.7
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.68
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.68
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.64
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.63
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.6
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.6
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.59
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.58
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.56
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.56
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.5
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.46
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.45
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.45
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.42
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.39
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.29
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	99.15
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.13
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.07
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	99.04
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	99.02
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.89
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.88
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.85
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.84
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.8
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.72
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.68
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.61
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.58
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.52
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.5
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	98.49
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.48
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.47
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.43
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.34
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.26
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.21
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	98.2
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.18
2x19_B	963	Importin-13; nuclear transport, protein transport;	98.14
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.13
2x19_B	963	Importin-13; nuclear transport, protein transport;	98.13
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	98.07
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.04
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	98.03
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	98.02
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.0
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	97.69
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	97.66
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.54
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.52
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.45
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.39
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.35
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	97.31
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	97.22
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	97.19
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.17
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	97.17
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	97.03
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	96.96
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	96.92
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	96.85
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	96.78
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	96.44
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	96.26
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	95.8
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	95.76
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	95.57
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	95.44
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	95.11
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	94.67
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	94.62
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	94.55
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	94.26
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	94.23
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	94.03
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	93.85
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	93.79
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	93.78
3fga_B	403	Serine/threonine-protein phosphatase 2A 56 kDa RE	92.39
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	91.93
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	91.3
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	90.87
2npp_B	449	PP2A, B subunit, serine/threonine-protein phosphat	89.74
2p8q_B	40	Snurportin-1; heat repeat, IBB-domain, importin, k	88.68
1vdy_A	140	Hypothetical protein (RAFL09-17-B18); structural g	86.61
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	84.36
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	83.67
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	83.19
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	82.73
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	81.06
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	80.86
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	80.78
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	80.73
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	80.34

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=1.3e-78  Score=629.44  Aligned_cols=519  Identities=48%  Similarity=0.779  Sum_probs=405.0

Q ss_pred             CCCCCCc-chHHHhhhcCC-CCCchHHhhhhhHHHHHHHHHhhHHHHHhhhhhccCCCCCCCCCCCccchhhhhhccHHH
Q 009568            1 MSLRPNA-RAEVRRNRYKV-AVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPPPAPASNLNLQTKLESLPA   78 (532)
Q Consensus         1 ~~~~~~~-~~~~~~~~~k~-~~~~~~~~~~r~~~~~~~Rk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   78 (532)
                      ||.+++. .+++|++.||+ |+|++|+||||+++.++|||+||+|.+.|||+.....++..++.+............++.
T Consensus         1 ~~~~~~~~~~~~r~~~~k~~~~~~~e~r~~R~~~~v~lRk~kr~e~l~krR~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   80 (529)
T 3tpo_A            1 MSTNENANLPAARLNRFKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVED   80 (529)
T ss_dssp             -------------------------------------------CCSCSCCCCCC---------------CGGGSSCCHHH
T ss_pred             CCCCCCCCCcHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCcccccChhhhccchhhhHHHHHHH
Confidence            7888876 57799999997 899999999999999999999999999999987543333222211110111112246899


Q ss_pred             HHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 009568           79 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID  158 (532)
Q Consensus        79 lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~  158 (532)
                      +++.++|+|++.+..|+..++++++.+++++++.+++.|+||.|+++|...+++.++..|+|+|+|++.++++.+..+++
T Consensus        81 lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~  160 (529)
T 3tpo_A           81 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD  160 (529)
T ss_dssp             HHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999999999998888999999999999999999987666999999999999999999999999999


Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhh----hhHHHHHHHHHhhhccCCC
Q 009568          159 HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA----KLSMLRNATWTLSNFCRGK  234 (532)
Q Consensus       159 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~----~~~~~~~a~~~L~~L~~~~  234 (532)
                      .|++|.|+.+|.+++..+++.|+|+|+||+.+++.+|+.+.+.|++++|+.++....    ...+++.++|++++++.+.
T Consensus       161 ~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~  240 (529)
T 3tpo_A          161 GGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK  240 (529)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred             CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999999995322    3467899999999999987


Q ss_pred             -CCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHh
Q 009568          235 -PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI  313 (532)
Q Consensus       235 -~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl  313 (532)
                       +........+++|.|+.++.+++++++..++|+|++++...++....+...|+++.|+.+|.+++..++.+++++|+|+
T Consensus       241 ~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl  320 (529)
T 3tpo_A          241 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI  320 (529)
T ss_dssp             TTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred             cchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHH
Confidence             5566666789999999999999999999999999999999988888899999999999999999999999999999999


Q ss_pred             hcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHH
Q 009568          314 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAW  393 (532)
Q Consensus       314 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~  393 (532)
                      +.+++..+..+++.|+++.|+.+|.++ ++.++++|+|+|+|++.+++.+...+++.|++|.|+.++.+++.+++.+|+|
T Consensus       321 ~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~  399 (529)
T 3tpo_A          321 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAW  399 (529)
T ss_dssp             TTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHH
T ss_pred             HccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHH
Confidence            999998999999999999999999998 9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHH
Q 009568          394 AISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEK  473 (532)
Q Consensus       394 aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  473 (532)
                      +|+|++.+++++++.++++.|++++|+++|+++|++++..++++|.+|++.+++..       ..+.|+..|+++||+++
T Consensus       400 aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~-------~~~~~~~~iee~ggl~~  472 (529)
T 3tpo_A          400 AITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-------ETEKLSIMIEECGGLDK  472 (529)
T ss_dssp             HHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT-------CHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc-------ChHHHHHHHHHCCcHHH
Confidence            99999998899999999999999999999999999999999999999999988653       56789999999999999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhCCCCcccc---ccCCCCCCCCccCCCCCCCCCCCCccC
Q 009568          474 IENLQSHDNNEIYEKAVKILETYWLEEDDET---IAAGDGPQPGFPYAGNEVQVPSGGFNF  531 (532)
Q Consensus       474 l~~L~~~~~~~v~~~a~~il~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (532)
                      |+.||+|+|++||++|..||++||++|++|+   .|+.++  ++|.|+.+  +.++|+|||
T Consensus       473 ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~f~f  529 (529)
T 3tpo_A          473 IEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETTS--EGFAFQVQ--DGAPGTFNF  529 (529)
T ss_dssp             HTGGGGCSSHHHHHHHHHHHHHHC-------------------------------------
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHCCCccccccccCCCCCC--cccccCCC--CCCCCCCCC
Confidence            9999999999999999999999999876665   466554  37999877  567799999

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=8.4e-67  Score=537.73  Aligned_cols=486  Identities=47%  Similarity=0.781  Sum_probs=394.3

Q ss_pred             HHHHHHHHhhHHHHHhhhhhccCCCCCCCCCCCccchhhhhhccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchh
Q 009568           32 NMVEIRKNKREESLLKKRREGLQSQQFPPPAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIE  111 (532)
Q Consensus        32 ~~~~~Rk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~  111 (532)
                      ..++.|+++++....+.++.....++.+. .+...... ..-..++.+|+.++|+|++.|+.|+..+|++++.+++||++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~   94 (510)
T 3ul1_B           17 GMLETAAALFERNHMDSPDLGTDDDDLAM-ADIGSNQG-TVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPID   94 (510)
T ss_dssp             -------------------------------------C-CSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHH
T ss_pred             ccHHHHHHHHHhhccCCccccCCccccch-hhhccccc-hhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHH
Confidence            34556666666666665554332222111 10000011 01136899999999999999999999999999998899999


Q ss_pred             HhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 009568          112 EVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS  191 (532)
Q Consensus       112 ~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~  191 (532)
                      .+++.|+||.|+++|+..+++.+|.+|+|+|+||++++++++..+++.|++|.|+.+|.+++..+++.|+|+|+||+.++
T Consensus        95 ~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~  174 (510)
T 3ul1_B           95 NIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG  174 (510)
T ss_dssp             HHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence            99999999999999987666899999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHhcCChHHHHHHhhhhh----hhHHHHHHHHHhhhccCCC-CCCCcccccchHHHHHHhhcCCCHHHHHHHHH
Q 009568          192 PRCRDLVLSQGALIPLLAQLNERA----KLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACW  266 (532)
Q Consensus       192 ~~~~~~~~~~~~l~~L~~ll~~~~----~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~  266 (532)
                      +.+|+.+.+.|++++|+.++....    ...+++.++|++++++++. +........+++|.|++++.+++++++..++|
T Consensus       175 ~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~  254 (510)
T 3ul1_B          175 SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCW  254 (510)
T ss_dssp             HHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             HHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHH
Confidence            999999999999999999995322    3467899999999999987 55566667899999999999999999999999


Q ss_pred             HHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHH
Q 009568          267 ALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIK  346 (532)
Q Consensus       267 ~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~  346 (532)
                      +|++++...++....+.+.|+++.|+.+|.+++..++.+++++|+|++.+++..+..+++.|+++.|..+|.++ ++.++
T Consensus       255 aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v~  333 (510)
T 3ul1_B          255 AISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQ  333 (510)
T ss_dssp             HHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHHH
T ss_pred             HHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHHHH
Confidence            99999999888888899999999999999999999999999999999999999999999999999999999998 99999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCC
Q 009568          347 KEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCP  426 (532)
Q Consensus       347 ~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~  426 (532)
                      +.|+|+|+|++.+++.++..+++.|++|.|+.++.+++.+++++|+|+|+|++.+++.+++.+|++.|+++.|+++|+++
T Consensus       334 ~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~  413 (510)
T 3ul1_B          334 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK  413 (510)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCS
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999998999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCcccc--
Q 009568          427 DPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDDET--  504 (532)
Q Consensus       427 d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~~~~~~--  504 (532)
                      |++++..++++|.+|++.+++..       ..++|+..|+++||+++|+.||+|+|++||++|..||++||++||+|+  
T Consensus       414 d~~i~~~~L~aL~nil~~~~~~~-------~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~  486 (510)
T 3ul1_B          414 DTKIIQVILDAISNIFQAAEKLG-------ETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQN  486 (510)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTT-------CHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC--------
T ss_pred             CHHHHHHHHHHHHHHHHHhHhcc-------chHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccccccc
Confidence            99999999999999999988653       567899999999999999999999999999999999999999877665  


Q ss_pred             -ccCCCCCCCCccCCCCCCCCCCCCccC
Q 009568          505 -IAAGDGPQPGFPYAGNEVQVPSGGFNF  531 (532)
Q Consensus       505 -~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (532)
                       .|+.++  ++|.|+.+  +.++|+|||
T Consensus       487 ~~~~~~~--~~~~~~~~--~~~~~~~~~  510 (510)
T 3ul1_B          487 VVPETTS--EGFAFQVQ--DGAPGTFNF  510 (510)
T ss_dssp             ----------------------------
T ss_pred             cCCCCCc--cccccCCC--CCCCCCCCC
Confidence             466554  37999877  667799999

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=3.3e-65  Score=530.93  Aligned_cols=500  Identities=84%  Similarity=1.285  Sum_probs=403.6

Q ss_pred             CCCCCCcchHHHhhhcCCCCCchHHhhhhhHHHHHHHHHhhHHHHHhhhhhccCCCCCCCCCCCccchhhhhhccHHHHH
Q 009568            1 MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPPPAPASNLNLQTKLESLPAMV   80 (532)
Q Consensus         1 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~r~~~~~~~Rk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv   80 (532)
                      |++..+.+++.|++.||++++++|+|+||+++.++|||+||+|++.|||+.....+..++....  .......+.++.++
T Consensus         3 ~~~~~~~~~~~~~~~~k~~~~~~~~r~~r~~~~~~lrk~~r~~~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~l~~lv   80 (528)
T 4b8j_A            3 MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVPASAA--TGVDKKLESLPAMI   80 (528)
T ss_dssp             ------------------------CCCCC-----------------CCCC------------------------CHHHHH
T ss_pred             CCCCCCCChHHHHHhhcccCChHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCcccccccccc--cchhhhHHHHHHHH
Confidence            7777777889999999999999999999999999999999999999999974322221111000  11112345799999


Q ss_pred             hhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCC
Q 009568           81 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG  160 (532)
Q Consensus        81 ~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g  160 (532)
                      +.|.++++.++..|++.|+++++...+++...++..|++|.|+++|.+++++.++..|+|+|++++.++++.+..+++.|
T Consensus        81 ~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g  160 (528)
T 4b8j_A           81 GGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHG  160 (528)
T ss_dssp             HHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred             HHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCC
Confidence            99999999999999999999998765578899999999999999999876589999999999999998899999999999


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcc
Q 009568          161 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD  240 (532)
Q Consensus       161 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~  240 (532)
                      +++.|+.+|.++++.+++.|+|+|++|+.+.+.++..+...|++++|+.++..+.+..++..++|+|++|+...+.....
T Consensus       161 ~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~  240 (528)
T 4b8j_A          161 AVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFE  240 (528)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHH
T ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHH
Confidence            99999999999999999999999999999999899999999999999999976778999999999999999987777777


Q ss_pred             cccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcch
Q 009568          241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ  320 (532)
Q Consensus       241 ~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~  320 (532)
                      ...+++|.|+.++.++++.++..++|+|++++...+...+.+++.|+++.|+.+|.++++.++..|+++|+|++.+++..
T Consensus       241 ~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~  320 (528)
T 4b8j_A          241 QTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQ  320 (528)
T ss_dssp             HHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHH
Confidence            78999999999999999999999999999999988888888999999999999999999999999999999999999888


Q ss_pred             hHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009568          321 TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS  400 (532)
Q Consensus       321 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~  400 (532)
                      .+.+++.|+++.|+.+|.++.++.+++.|+|+|+|++.++++.+..+++.|++|.|+.++.++++.++..|+|+|+|++.
T Consensus       321 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~  400 (528)
T 4b8j_A          321 TQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATS  400 (528)
T ss_dssp             HHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHc
Confidence            88999999999999999876578999999999999999989999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcC
Q 009568          401 GGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSH  480 (532)
Q Consensus       401 ~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~  480 (532)
                      .++++...++++.|+++.|+.+|..++++++..++++|.+++..++........  ..++|+..+.+.||+++|+.|++|
T Consensus       401 ~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~l~~L~~~  478 (528)
T 4b8j_A          401 GGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAG--DVNVFSQMIDEAEGLEKIENLQSH  478 (528)
T ss_dssp             HSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTC--SCCHHHHHHHHTTHHHHHHHGGGC
T ss_pred             CCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccc--cccHHHHHHHHCCcHHHHHHHHcC
Confidence            888899999999999999999999999999999999999999988764332111  356799999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCcccc
Q 009568          481 DNNEIYEKAVKILETYWLEEDDET  504 (532)
Q Consensus       481 ~~~~v~~~a~~il~~~~~~~~~~~  504 (532)
                      ++++++++|..++++||+.+++++
T Consensus       479 ~~~~v~~~a~~il~~~~~~e~~~~  502 (528)
T 4b8j_A          479 DNNEIYEKAVKILEAYWMDEEDDT  502 (528)
T ss_dssp             SSHHHHHHHHHHHHHHCC------
T ss_pred             CCHHHHHHHHHHHHHHCCCccccc
Confidence            999999999999999999887776

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=4.8e-60  Score=491.95  Aligned_cols=494  Identities=55%  Similarity=0.833  Sum_probs=425.0

Q ss_pred             CCcchHHHhhhcCC-C-CCchHHhhhhhHHHHHHHHHhhHHHHHhhhhhccC---CCCCCCCC----CCccchhhhhhcc
Q 009568            5 PNARAEVRRNRYKV-A-VDADEGRRRREDNMVEIRKNKREESLLKKRREGLQ---SQQFPPPA----PASNLNLQTKLES   75 (532)
Q Consensus         5 ~~~~~~~~~~~~k~-~-~~~~~~~~~r~~~~~~~Rk~~r~~~~~~~r~~~~~---~~~~~~~~----~~~~~~~~~~~~~   75 (532)
                      ...+++.|++.||+ + +|++|+||||++..+++||+||++.+.|||+....   .+..+...    .+. .......+.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~rk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   88 (530)
T 1wa5_B           10 SKFVPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQ-QFYSQLQQE   88 (530)
T ss_dssp             --CCCGGGCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC-----------------------------CC
T ss_pred             CCCchHHHHHHHhccCCCChHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCccccccccCCchhhhhhhhh-hhhhhhHHH
Confidence            34466789999998 8 99999999999999999999999999999987532   11100000    000 000012257


Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 009568           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV  155 (532)
Q Consensus        76 l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  155 (532)
                      ++.+++.|+++++.++..|+..|+++++...++++..++..|++|.|+++|.+++++.++..|+|+|++++.++++.+..
T Consensus        89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  168 (530)
T 1wa5_B           89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKV  168 (530)
T ss_dssp             HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            89999999999999999999999999987656778889999999999999998733999999999999999988999999


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC-
Q 009568          156 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-  234 (532)
Q Consensus       156 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~-  234 (532)
                      +++.|+++.|+.+|.++++.+++.|+|+|++++.+.+..++.+...|+++.|+.++ .+.+..++..++|+|++|+.+. 
T Consensus       169 ~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~  247 (530)
T 1wa5_B          169 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKK  247 (530)
T ss_dssp             HHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSS
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999999999888999999999999999999 5578899999999999999987 


Q ss_pred             CCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhh
Q 009568          235 PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV  314 (532)
Q Consensus       235 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~  314 (532)
                      +........+++|.|+.++.++++.++..++|+|++++...+.....+++.|+++.|+.+|.++++.++..|+++|++++
T Consensus       248 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~  327 (530)
T 1wa5_B          248 PQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV  327 (530)
T ss_dssp             SCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred             CCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHH
Confidence            66666777899999999999999999999999999999988888888899999999999999999999999999999999


Q ss_pred             cCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHH
Q 009568          315 TGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWA  394 (532)
Q Consensus       315 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a  394 (532)
                      .+++...+.+++.|+++.|+.+|.++ ++.+++.|+|+|+|++.++++.++.+++.|+++.|+.++.++++.++..|+|+
T Consensus       328 ~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~a  406 (530)
T 1wa5_B          328 TGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWA  406 (530)
T ss_dssp             TSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence            99888888889999999999999998 99999999999999999889999999999999999999999999999999999


Q ss_pred             HHHhhcCCCH--HHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHH
Q 009568          395 ISNATSGGTH--EQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLE  472 (532)
Q Consensus       395 L~nl~~~~~~--~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  472 (532)
                      |+|++..+++  +...++++.|+++.|+.++.++++.++..++++|.+++..++....... + ..++|+..+.+.||++
T Consensus       407 L~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~-~-~~~~~~~~l~~~g~~~  484 (530)
T 1wa5_B          407 ISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARG-L-NINENADFIEKAGGME  484 (530)
T ss_dssp             HHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHT-C-SSCHHHHHHHHTTHHH
T ss_pred             HHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhccc-c-cccHHHHHHHHcCcHH
Confidence            9999987666  7888899999999999999999999999999999999998776421100 0 3567999999999999


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhCCCCccc
Q 009568          473 KIENLQSHDNNEIYEKAVKILETYWLEEDDE  503 (532)
Q Consensus       473 ~l~~L~~~~~~~v~~~a~~il~~~~~~~~~~  503 (532)
                      +|+.|++|++++|+++|..+|++||..+++|
T Consensus       485 ~L~~L~~~~~~~v~~~a~~il~~~~~~~~~~  515 (530)
T 1wa5_B          485 KIFNCQQNENDKIYEKAYKIIETYFGEEEDA  515 (530)
T ss_dssp             HHHGGGGCSCHHHHHHHHHHHHHHSSSCC--
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHCCccccc
Confidence            9999999999999999999999999987664

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=1.4e-47  Score=390.44  Aligned_cols=425  Identities=61%  Similarity=0.963  Sum_probs=386.4

Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhC-CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQS-GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (532)
Q Consensus        76 l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~-g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  154 (532)
                      ++.+++.|+++++.++..|+..|+++++...+++.+.++.. |++|.|+++|.+++++.++..|+++|++++.++++...
T Consensus        22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~  101 (450)
T 2jdq_A           22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR  101 (450)
T ss_dssp             CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            78999999999999999999999999875446677788887 99999999999983499999999999999998888888


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC
Q 009568          155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  234 (532)
Q Consensus       155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~  234 (532)
                      .+++.|+++.|+.+|.++++.+++.|+|+|++++.+.+..++.+.+.|+++.|+.++..+.+..++..++|+|++++.+.
T Consensus       102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~  181 (450)
T 2jdq_A          102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK  181 (450)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred             HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence            89999999999999999999999999999999999988899999999999999999954578999999999999999886


Q ss_pred             -CCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHh
Q 009568          235 -PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI  313 (532)
Q Consensus       235 -~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl  313 (532)
                       +........+++|.|+.++.++++.++..++|+|.+++...++....+.+.++++.|+.+|.++++.++..|+++|+++
T Consensus       182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l  261 (450)
T 2jdq_A          182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI  261 (450)
T ss_dssp             SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence             5555666689999999999999999999999999999988777778888999999999999999999999999999999


Q ss_pred             hcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHH
Q 009568          314 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAW  393 (532)
Q Consensus       314 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~  393 (532)
                      +.+.+...+.+++.|+++.|+.+|.++ ++.+++.|+|+|+|++.+++...+.+++.|++|.|+.++.++++++|..|+|
T Consensus       262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~  340 (450)
T 2jdq_A          262 VTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAW  340 (450)
T ss_dssp             TTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             hhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence            998887788888999999999999998 9999999999999999988999999999999999999999999999999999


Q ss_pred             HHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHH
Q 009568          394 AISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEK  473 (532)
Q Consensus       394 aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  473 (532)
                      +|+|++..++++...++++.|+++.|+.++++++++++..++++|.+++..++.....+. + ..++|+..+.+.||+++
T Consensus       341 ~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~-~-~~~~~~~~l~~~g~~~~  418 (450)
T 2jdq_A          341 AITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNG-T-GINPYCALIEEAYGLDK  418 (450)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSC-S-CCCHHHHHHHHHHCHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccc-c-chhHHHHHHHHcCcHHH
Confidence            999999877788888888999999999999999999999999999999988765422110 0 35679999999999999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhCCCCccc
Q 009568          474 IENLQSHDNNEIYEKAVKILETYWLEEDDE  503 (532)
Q Consensus       474 l~~L~~~~~~~v~~~a~~il~~~~~~~~~~  503 (532)
                      |..|++|++++++..|..+|++||+.|+++
T Consensus       419 l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~  448 (450)
T 2jdq_A          419 IEFLQSHENQEIYQKAFDLIEHYFGTEDED  448 (450)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHCCC---
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHCCccccc
Confidence            999999999999999999999999877654

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=1.8e-40  Score=330.31  Aligned_cols=366  Identities=20%  Similarity=0.207  Sum_probs=295.2

Q ss_pred             hhhccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCch-hHhhhCCcHHHHHHhhcCCCC-----------HHHHHHH
Q 009568           71 TKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPI-EEVIQSGVVPRFVEFLMREDY-----------PQLQFEA  138 (532)
Q Consensus        71 ~~~~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~-~~~i~~g~i~~Lv~lL~~~~~-----------~~~~~~a  138 (532)
                      .+++.++.++..+.+.++..      .++++++.+.++++ ..+++.|++|.|+++|+..+.           ++++.+|
T Consensus        29 ~~~~~~~~l~~~~~~~~~~~------~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a  102 (458)
T 3nmz_A           29 TKVEMVYSLLSMLGTHDKDD------MSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARA  102 (458)
T ss_dssp             ----------------CCHH------HHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHH
T ss_pred             chHHHHHHHHHHhcCCCHHH------HHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHH
Confidence            45678899999999888772      34444443335555 778899999999999997432           7999999


Q ss_pred             HHHHHHHhcCChhhHHHHHhCCCh----------HHHHHhhCCCC--HH-----HHH-------HHHHHHHHhhCCCchh
Q 009568          139 AWALTNIASGTSENTKVVIDHGAV----------PIFVKLLASPS--DD-----VRE-------QAVWALGNVAGDSPRC  194 (532)
Q Consensus       139 ~~~L~~l~~~~~~~~~~i~~~g~i----------~~L~~lL~~~~--~~-----v~~-------~a~~~L~nl~~~~~~~  194 (532)
                      +|+|+||+.+.++......+.+++          +.+++++.+..  .+     +++       +|+|+|+|++.+ +.+
T Consensus       103 ~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~  181 (458)
T 3nmz_A          103 SAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEH  181 (458)
T ss_dssp             HHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHH
T ss_pred             HHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHH
Confidence            999999999999999998888888          66777776642  22     545       999999999665 789


Q ss_pred             HHHHHhcCChHHHHHHhhh----------hhhhHHHHHHHHHhhhccCCCCCCCccc--ccchHHHHHHhhcCCCHHHHH
Q 009568          195 RDLVLSQGALIPLLAQLNE----------RAKLSMLRNATWTLSNFCRGKPQPPFDQ--VRPALPALAQLVHSNDEEVLT  262 (532)
Q Consensus       195 ~~~~~~~~~l~~L~~ll~~----------~~~~~~~~~a~~~L~~L~~~~~~~~~~~--~~~~l~~L~~lL~~~d~~v~~  262 (532)
                      |+.+.+.|++++|+.+|..          ..++.+++.++|+|.|||.+.+......  ..+++|.|+.+|.+++++++.
T Consensus       182 R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~  261 (458)
T 3nmz_A          182 RHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQ  261 (458)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHH
Confidence            9999999999999999942          2467899999999999998863222222  456799999999999999999


Q ss_pred             HHHHHHHHhccC-ChhHHHHHHHhCchHHHHHhh-CCCCccchhhHHHHHHHhhcCCcchhHHHh-hcCchHHHHHHhcC
Q 009568          263 DACWALSYLSDG-TNDKIQAVIEAGVCPRLVELL-GHPSPSVLIPALRTVGNIVTGDDFQTQCII-TYGALPYLLGLLTH  339 (532)
Q Consensus       263 ~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~~~~-~~~~l~~L~~lL~~  339 (532)
                      .++|+|++|+.. ++.....+.+.|+++.|+.+| .+.+..++..|+.+|+||+.+.+.....+. ..|+++.|+.+|.+
T Consensus       262 ~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~  341 (458)
T 3nmz_A          262 VIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTY  341 (458)
T ss_dssp             HHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTC
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcC
Confidence            999999999985 566778889999999999975 556788999999999999985554444555 78999999999987


Q ss_pred             CCch----hHHHHHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 009568          340 SHKK----SIKKEACWTISNITA---GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVR  412 (532)
Q Consensus       340 ~~~~----~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~  412 (532)
                      . ++    .+++.|+|+|.|++.   +++++.+.+++.|++|.|+.+|.+++..++++|+|+|.|++.. ++++...+++
T Consensus       342 ~-~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~  419 (458)
T 3nmz_A          342 R-SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWD  419 (458)
T ss_dssp             C-CSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHHHH
T ss_pred             C-CCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHHHH
Confidence            6 43    499999999999997   7899999999999999999999999999999999999999875 6788999999


Q ss_pred             cCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 009568          413 EGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG  445 (532)
Q Consensus       413 ~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~  445 (532)
                      .|+++.|+++|.++++.++..++++|.+|+...
T Consensus       420 ~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          420 MGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             HTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred             CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999998753

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=2.9e-40  Score=346.55  Aligned_cols=366  Identities=16%  Similarity=0.133  Sum_probs=318.8

Q ss_pred             cHHHHHhhhcCC--ChHHHHHHHHHHHHHhcCCCCCchhHhh-hCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCh-
Q 009568           75 SLPAMVAGVWSD--DSSLQLEATTQFRKLLSIERSPPIEEVI-QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTS-  150 (532)
Q Consensus        75 ~l~~lv~~L~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~i-~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~-  150 (532)
                      .++.+++.|.++  |++++..|++.|..+...  .+....++ +.|++|.|+++|++++ +.+++.|+|+|+||+.+.+ 
T Consensus       378 Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~--~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~d~  454 (810)
T 3now_A          378 LAEACRRFLIKPGKDKDIRRWAADGLAYLTLD--AECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYEK  454 (810)
T ss_dssp             HHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS--HHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCSCC
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCchh
Confidence            467888999988  899999999999999764  34444444 6799999999999988 8999999999999998542 


Q ss_pred             ----------------------------hh---HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHH
Q 009568          151 ----------------------------EN---TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVL  199 (532)
Q Consensus       151 ----------------------------~~---~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~  199 (532)
                                                  ..   .+.+++.|++|.|+.+|.++++.++++|+|+|+||+++ +.+|..+.
T Consensus       455 q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv  533 (810)
T 3now_A          455 QEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVV  533 (810)
T ss_dssp             CCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHH
T ss_pred             hhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence                                        11   27889999999999999999999999999999999975 55899999


Q ss_pred             hcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC-CCCCc--ccccchHHHHHHhhcCC-CHHHHHHHHHHHHHhccCC
Q 009568          200 SQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPF--DQVRPALPALAQLVHSN-DEEVLTDACWALSYLSDGT  275 (532)
Q Consensus       200 ~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~~~--~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~~  275 (532)
                      +.|++++|+.+| .+.++..++.|+|+|++|+.+. +...+  ....+++|.|+.+|.++ +...+..++|+|.||+..+
T Consensus       534 ~~Gaip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~  612 (810)
T 3now_A          534 QEGGVKALLRMA-LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMN  612 (810)
T ss_dssp             HTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC
T ss_pred             HCCCHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCC
Confidence            999999999999 6667788999999999999764 21111  12346899999999865 3445678999999999998


Q ss_pred             hhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhh-cCchHHHHHHhcCCCchhHHHHHHHHHH
Q 009568          276 NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIIT-YGALPYLLGLLTHSHKKSIKKEACWTIS  354 (532)
Q Consensus       276 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~a~~~L~  354 (532)
                      ++....+++.|+++.|+.+|.++++.++.+|+++|+||+.+++...+ +++ .|.++.|+.++.+. +..+++.|+|+|+
T Consensus       613 d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~-~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALa  690 (810)
T 3now_A          613 ESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKM-FEGNNDRVKFLALLCEDE-DEETATACAGALA  690 (810)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHH-HHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHH-HHhccCcHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence            88888899999999999999999999999999999999997765444 444 79999999999998 9999999999999


Q ss_pred             HHhcCCHHHHHHHHH-cCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCC---CHHH
Q 009568          355 NITAGNRDQIQAVID-AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCP---DPRI  430 (532)
Q Consensus       355 nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~---d~~v  430 (532)
                      |++.+++.+++.+++ .|+++.|+.++.+++.+++..|+|+|.|++.+ +.++..++.+.|++++|+.+++.+   ++++
T Consensus       691 nLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i  769 (810)
T 3now_A          691 IITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAKA  769 (810)
T ss_dssp             HHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHH
T ss_pred             HHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHHH
Confidence            999988899999998 89999999999999999999999999999985 678899999999999999999765   6899


Q ss_pred             HHHHHHHHHHHHHhhhhh
Q 009568          431 VTVCLEGLENILKVGEAE  448 (532)
Q Consensus       431 ~~~al~~L~~l~~~~~~~  448 (532)
                      +..++++|.+++..|.-.
T Consensus       770 ~e~Al~aL~~ll~~g~~~  787 (810)
T 3now_A          770 REVATQCLAAAERYRIIE  787 (810)
T ss_dssp             HHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHhCCCcc
Confidence            999999999999987654

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=1.9e-39  Score=328.83  Aligned_cols=365  Identities=19%  Similarity=0.205  Sum_probs=311.2

Q ss_pred             cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q 009568          118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL  197 (532)
Q Consensus       118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~  197 (532)
                      .+|.|+.+|.+++ ++++..|+++|.+++.+++..+..+++.|++|.|+.+|.++++.++..|+|+|.||+.+++..+..
T Consensus         3 ~l~~lv~~L~s~~-~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~   81 (457)
T 1xm9_A            3 TIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            5899999999998 899999999999999878888889999999999999999999999999999999999988889999


Q ss_pred             HHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhc--------C--------CCHHHH
Q 009568          198 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH--------S--------NDEEVL  261 (532)
Q Consensus       198 ~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~--------~--------~d~~v~  261 (532)
                      +.+.|++++|+.+|..+.++++++.++|+|+||+.+......... +++|.|+.++.        +        .++.+.
T Consensus        82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~  160 (457)
T 1xm9_A           82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF  160 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred             HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence            999999999999995477899999999999999998433333344 99999999993        2        356778


Q ss_pred             HHHHHHHHHhccCChhHHHHHHHh-CchHHHHHhhCC------CCccchhhHHHHHHHhhcC------------------
Q 009568          262 TDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLGH------PSPSVLIPALRTVGNIVTG------------------  316 (532)
Q Consensus       262 ~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~v~~~al~~L~nl~~~------------------  316 (532)
                      ..++|+|+|++.. ++....+.+. |+++.|+.+|.+      .+..+...++.+|.|++..                  
T Consensus       161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~  239 (457)
T 1xm9_A          161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence            8999999999987 7777888887 999999999975      4667888899999998631                  


Q ss_pred             --------------------------------CcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH--
Q 009568          317 --------------------------------DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD--  362 (532)
Q Consensus       317 --------------------------------~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~--  362 (532)
                                                      .+...+.+++.++++.++.+|.++.++.++..|+|+|+|++.++..  
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~  319 (457)
T 1xm9_A          240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred             ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence                                            1224455677788999999998775789999999999999986533  


Q ss_pred             -HH-HHHH-HcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCH------HHHHH
Q 009568          363 -QI-QAVI-DAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDP------RIVTV  433 (532)
Q Consensus       363 -~~-~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~------~v~~~  433 (532)
                       .+ +.++ +.|++|.|+++|.+++.+++++|+|+|.|++.+.   ....++..|+++.|+++|...++      +++..
T Consensus       320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~---~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~  396 (457)
T 1xm9_A          320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP---LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSS  396 (457)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG---GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred             HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH---HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHH
Confidence             23 4455 6899999999999999999999999999998852   34556667899999999998653      68889


Q ss_pred             HHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCC-CHHHHHHHHHHHHHhCCCCc
Q 009568          434 CLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHD-NNEIYEKAVKILETYWLEED  501 (532)
Q Consensus       434 al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~-~~~v~~~a~~il~~~~~~~~  501 (532)
                      ++++|.+++....             .+...+.++||++.|..|+.|+ ++++|++|.++|.+||...+
T Consensus       397 ~l~~l~ni~~~~~-------------~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~  452 (457)
T 1xm9_A          397 ACYTVRNLMASQP-------------QLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE  452 (457)
T ss_dssp             HHHHHHHHHTTCT-------------HHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred             HHHHHHHHHhcCH-------------HHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence            9999999986432             3578889999999999999999 99999999999999997653

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=1e-38  Score=330.40  Aligned_cols=369  Identities=26%  Similarity=0.406  Sum_probs=326.2

Q ss_pred             hccHHHHHhhhc-CCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009568           73 LESLPAMVAGVW-SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE  151 (532)
Q Consensus        73 ~~~l~~lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~  151 (532)
                      .+.+|.|++.|. ++++.++..|+++|.+++++. ......+++.|++|.|+.+|.+++ ++++..|+|+|+||+.++++
T Consensus       118 ~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~-~~~~~~vv~~Gaip~Lv~LL~s~~-~~v~e~A~~aL~nLa~~~~~  195 (529)
T 3tpo_A          118 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGAGSA  195 (529)
T ss_dssp             TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHH
T ss_pred             CCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhccCHH
Confidence            468999999997 455889999999999999863 455677889999999999999998 99999999999999998899


Q ss_pred             hHHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHH
Q 009568          152 NTKVVIDHGAVPIFVKLLASPS-----DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWT  226 (532)
Q Consensus       152 ~~~~i~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~  226 (532)
                      .+..+++.|+++.|+.+|..++     ..+.+.++|+|.+++.............++++.|+.++ .+.+++++..++|+
T Consensus       196 ~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~a~~a  274 (529)
T 3tpo_A          196 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWA  274 (529)
T ss_dssp             HHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT-TSSCHHHHHHHHHH
T ss_pred             HHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh-cCCcHHHHHHHHHH
Confidence            9999999999999999998643     46788999999999987655555555567899999999 78889999999999


Q ss_pred             hhhccCCCC-CCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhh
Q 009568          227 LSNFCRGKP-QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIP  305 (532)
Q Consensus       227 L~~L~~~~~-~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~  305 (532)
                      |++++.+.+ ........+++|.|+.+|.++++.++..++++|++++.+++.....+++.|+++.|+.+|.++++.++..
T Consensus       275 L~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~  354 (529)
T 3tpo_A          275 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE  354 (529)
T ss_dssp             HHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHH
T ss_pred             HHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHH
Confidence            999998752 2233445789999999999999999999999999999998888899999999999999999999999999


Q ss_pred             HHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHHhcCc
Q 009568          306 ALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQAVIDAGLVGPLVNLLQNAE  384 (532)
Q Consensus       306 al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~  384 (532)
                      |+++|+||+.+++.+...+++.|++|.|+.+|.++ +..++++|+|+|+|++. ++++++..+++.|+++.|+.+|.+.+
T Consensus       355 a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d  433 (529)
T 3tpo_A          355 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD  433 (529)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSC
T ss_pred             HHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCC
Confidence            99999999999998899999999999999999999 99999999999999987 67888999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhhcC----CCH-HHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 009568          385 FDIKKEAAWAISNATSG----GTH-EQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG  445 (532)
Q Consensus       385 ~~v~~~a~~aL~nl~~~----~~~-~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~  445 (532)
                      ++++..++++|.|+...    +.. .....+.+.|+++.|..+..+++.++...|...|.+.|...
T Consensus       434 ~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~  499 (529)
T 3tpo_A          434 TKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVE  499 (529)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence            99999999999999742    233 34455568899999999999999999999999999887543

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=5.4e-39  Score=330.55  Aligned_cols=369  Identities=26%  Similarity=0.408  Sum_probs=325.9

Q ss_pred             hccHHHHHhhhcC-CChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009568           73 LESLPAMVAGVWS-DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE  151 (532)
Q Consensus        73 ~~~l~~lv~~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~  151 (532)
                      -+.+|.|+++|++ +++.+|..|+++|.+++++. ....+.+++.|++|.|+.+|.+++ ++++..|+|+|+||+.++++
T Consensus        99 ~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~-~e~~~~vv~~GaIp~Lv~lL~s~~-~~v~e~A~~aL~nLa~d~~~  176 (510)
T 3ul1_B           99 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSA  176 (510)
T ss_dssp             TTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHH
T ss_pred             CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHH
Confidence            4689999999975 55889999999999999864 556778899999999999999988 99999999999999998899


Q ss_pred             hHHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHH
Q 009568          152 NTKVVIDHGAVPIFVKLLASPS-----DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWT  226 (532)
Q Consensus       152 ~~~~i~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~  226 (532)
                      .+..+++.|+++.|+.+|.+++     ..+.+.++|+|.+++.............++++.|+.++ .+.+++++..++|+
T Consensus       177 ~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~A~~a  255 (510)
T 3ul1_B          177 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWA  255 (510)
T ss_dssp             HHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHH
T ss_pred             HHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHH-hcCCHHHHHHHHHH
Confidence            9999999999999999998743     46788999999999987654455555567899999999 77889999999999


Q ss_pred             hhhccCCCC-CCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhh
Q 009568          227 LSNFCRGKP-QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIP  305 (532)
Q Consensus       227 L~~L~~~~~-~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~  305 (532)
                      |++|+...+ ........+++|.|+.++.+++..++..++++|++++..++.....+++.|+++.|+.+|.+++..++..
T Consensus       256 L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~  335 (510)
T 3ul1_B          256 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE  335 (510)
T ss_dssp             HHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHH
T ss_pred             HHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHH
Confidence            999998752 2233345789999999999999999999999999999999988899999999999999999999999999


Q ss_pred             HHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHHhcCc
Q 009568          306 ALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQAVIDAGLVGPLVNLLQNAE  384 (532)
Q Consensus       306 al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~  384 (532)
                      |+++|+||+.+++.+...+++.|+++.|+.+|.+. +..++++|+|+|+|++. ++++++..+++.|+++.|+.+|.+.+
T Consensus       336 A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d  414 (510)
T 3ul1_B          336 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD  414 (510)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSC
T ss_pred             HHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCC
Confidence            99999999999998999999999999999999999 99999999999999997 67888999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhhcC----CC-HHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 009568          385 FDIKKEAAWAISNATSG----GT-HEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG  445 (532)
Q Consensus       385 ~~v~~~a~~aL~nl~~~----~~-~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~  445 (532)
                      ++++..++++|.|+...    +. ......+.+.|+++.|..+..+++.++...|...|.+.|...
T Consensus       415 ~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~  480 (510)
T 3ul1_B          415 TKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVE  480 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence            99999999999999752    22 334455567899999999999999999999999999887543

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=1.1e-37  Score=324.14  Aligned_cols=402  Identities=18%  Similarity=0.202  Sum_probs=341.6

Q ss_pred             ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (532)
Q Consensus        74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  153 (532)
                      +.++.+++.|+++++.++..|+..|.+++... ......+.+.|++|.|+++|.+++ +.++..++.+|.+++.++++.+
T Consensus       101 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~~~~~  178 (529)
T 1jdh_A          101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK  178 (529)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cchHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhCCHHHH
Confidence            68999999999999999999999999999863 345666778999999999999987 8999999999999999889999


Q ss_pred             HHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccC
Q 009568          154 KVVIDHGAVPIFVKLLASP-SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR  232 (532)
Q Consensus       154 ~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~  232 (532)
                      ..+.+.|+++.|+.+|.+. ....+..++.+|.+++. .+..+..+.+.|+++.|+.++ .+.++.+++.++|+|.+|+.
T Consensus       179 ~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~L~~l~~  256 (529)
T 1jdh_A          179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD  256 (529)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHHHHHHHhc
Confidence            9999999999999999874 46677888999999986 456788899999999999999 56688999999999999998


Q ss_pred             CCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCC--CCccchhhHHHHH
Q 009568          233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH--PSPSVLIPALRTV  310 (532)
Q Consensus       233 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~al~~L  310 (532)
                      ..+.  .....+++|.|++++.+++++++..++|+|++++..+++....+.+.|+++.|+.+|.+  .++.++..|+++|
T Consensus       257 ~~~~--~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L  334 (529)
T 1jdh_A          257 AATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  334 (529)
T ss_dssp             TCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CChh--hHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHH
Confidence            8633  23457899999999999999999999999999999888888889999999999999975  3478999999999


Q ss_pred             HHhhcCCcc---hhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhH
Q 009568          311 GNIVTGDDF---QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDI  387 (532)
Q Consensus       311 ~nl~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v  387 (532)
                      +|++.+++.   ....+.+.|+++.|+.+|.++.++.+++.++|+|+|++.++.. ...+++.|++|.|+.++.++++++
T Consensus       335 ~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~v  413 (529)
T 1jdh_A          335 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAHQDT  413 (529)
T ss_dssp             HHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhh-hHHHHHcCCHHHHHHHHHHHhHHH
Confidence            999986543   3457888999999999999883369999999999999986554 467889999999999999988899


Q ss_pred             HHHHHHHHHH--hhcCC------------------CHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 009568          388 KKEAAWAISN--ATSGG------------------THEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEA  447 (532)
Q Consensus       388 ~~~a~~aL~n--l~~~~------------------~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~  447 (532)
                      |++|+|++.|  +..++                  .++....+.+.|+++.|+.++.+++++++..+.++|.++...   
T Consensus       414 ~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~---  490 (529)
T 1jdh_A          414 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD---  490 (529)
T ss_dssp             C-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS---
T ss_pred             HHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC---
Confidence            9988888877  33222                  344456678899999999999999999999999999998632   


Q ss_pred             hhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009568          448 EKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETY  496 (532)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~  496 (532)
                                 ++++..+.+.|+++.|..|++|+|++|+.+|.+++.++
T Consensus       491 -----------~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l  528 (529)
T 1jdh_A          491 -----------KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             -----------HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             -----------HHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence                       23578899999999999999999999999999999865

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=4.1e-37  Score=326.43  Aligned_cols=405  Identities=19%  Similarity=0.226  Sum_probs=344.6

Q ss_pred             ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (532)
Q Consensus        74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  153 (532)
                      +.++.+++.|+++++.++..|+.+|.+++... ......+++.|++|.|+++|.+++ +.++..++.+|.+++.++++.+
T Consensus        98 g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~~  175 (644)
T 2z6h_A           98 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK  175 (644)
T ss_dssp             THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHHhcCcHHH
Confidence            67999999999999999999999999999864 455667778999999999999987 8899999999999998889999


Q ss_pred             HHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccC
Q 009568          154 KVVIDHGAVPIFVKLLASP-SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR  232 (532)
Q Consensus       154 ~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~  232 (532)
                      ..+.+.|+++.|+.+|.+. ...++..++.+|.+++. ++..+..+.+.|+++.|+.++ .+.+..+++.++|+|.+|+.
T Consensus       176 ~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~nL~~  253 (644)
T 2z6h_A          176 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD  253 (644)
T ss_dssp             HHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTT-TCSCHHHHHHHHHHHHHHGG
T ss_pred             HHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhh
Confidence            9999999999999999874 47788999999999985 556788999999999999999 56688999999999999998


Q ss_pred             CCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCC--CccchhhHHHHH
Q 009568          233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP--SPSVLIPALRTV  310 (532)
Q Consensus       233 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~al~~L  310 (532)
                      ..+.  .....+++|.|+.++.+.+++++..++|+|++++...+.....+.+.|+++.|+.+|.+.  .+.++..|+++|
T Consensus       254 ~~~~--~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL  331 (644)
T 2z6h_A          254 AATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  331 (644)
T ss_dssp             GCTT--CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHH
Confidence            7533  344568999999999999999999999999999998888888899999999999999763  268999999999


Q ss_pred             HHhhcCCcc--h-hHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhH
Q 009568          311 GNIVTGDDF--Q-TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDI  387 (532)
Q Consensus       311 ~nl~~~~~~--~-~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v  387 (532)
                      +||+...+.  . ...+++.|+++.|+.+|.++.++.+++.|+|+|+|++.+...+ ..+++.|+++.|+.++.+.++++
T Consensus       332 ~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~-~~i~~~~~i~~Lv~lL~~~~~~v  410 (644)
T 2z6h_A          332 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDT  410 (644)
T ss_dssp             HHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHH-HHHHHcCCHHHHHHHHhccchhh
Confidence            999975442  2 3347788999999999998734699999999999999875544 78889999999999998866555


Q ss_pred             HHHHHH----------------------HHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 009568          388 KKEAAW----------------------AISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG  445 (532)
Q Consensus       388 ~~~a~~----------------------aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~  445 (532)
                      |++|+|                      +|.+++.  +......+.+.|+++.|+.+|.+.++.++..++++|.++... 
T Consensus       411 r~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~-  487 (644)
T 2z6h_A          411 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-  487 (644)
T ss_dssp             TTC----------CCSSCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-
T ss_pred             hhHhhhccccchhcccccHHHHHHHHHHHHHHHhc--CHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-
Confidence            555554                      4455554  234446777899999999999999999999999999998742 


Q ss_pred             hhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHH------------------HHH--HHHHHHHhCCCCc
Q 009568          446 EAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEI------------------YEK--AVKILETYWLEED  501 (532)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v------------------~~~--a~~il~~~~~~~~  501 (532)
                                   .+++..+.+.|+++.|..++++++++|                  |.+  +..+++.||..+.
T Consensus       488 -------------~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~il~~~~~~~~  550 (644)
T 2z6h_A          488 -------------KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEP  550 (644)
T ss_dssp             -------------HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCCSC
T ss_pred             -------------HHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhhhcccchHHHHHHHhCCC
Confidence                         225788999999999999999999999                  544  6778899997664

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=7.3e-38  Score=328.45  Aligned_cols=406  Identities=16%  Similarity=0.125  Sum_probs=335.4

Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhC----CcHHHHHHhhcCC--CCHHHHHHHHHHHHHHhcCC
Q 009568           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQS----GVVPRFVEFLMRE--DYPQLQFEAAWALTNIASGT  149 (532)
Q Consensus        76 l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~----g~i~~Lv~lL~~~--~~~~~~~~a~~~L~~l~~~~  149 (532)
                      ++.|+..+++++..++..|+..|.++.+.....+....+..    .+++.|+++|.++  + ++++..|+|+|.+++. .
T Consensus       332 v~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d-~~v~~~AveaLayLS~-~  409 (810)
T 3now_A          332 VDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKD-KDIRRWAADGLAYLTL-D  409 (810)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCC-SSHHHHHHHHHHHHTT-S
T ss_pred             cHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHHhC-C
Confidence            58888888888888888999999999764221221122222    3477899999987  5 7999999999999999 5


Q ss_pred             hhhHHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-----------------------------hhH---H
Q 009568          150 SENTKVVI-DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP-----------------------------RCR---D  196 (532)
Q Consensus       150 ~~~~~~i~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-----------------------------~~~---~  196 (532)
                      ++.+..++ +.|++|.|+.+|++++..++..++|+|+||+.+.+                             ..+   +
T Consensus       410 ~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~  489 (810)
T 3now_A          410 AECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRIT  489 (810)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHH
Confidence            56666655 57999999999999999999999999999997542                             122   5


Q ss_pred             HHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh
Q 009568          197 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN  276 (532)
Q Consensus       197 ~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~  276 (532)
                      .+++.|+++.|+.++ .++++.++..++|+|.||+.+.+........|++|.|+.+|.++++..+..|+|+|++++...+
T Consensus       490 ~VveaGaVp~LV~LL-~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~  568 (810)
T 3now_A          490 VLANEGITTALCALA-KTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITIN  568 (810)
T ss_dssp             HHHHTTHHHHHHHHH-TCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHCcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCC
Confidence            778999999999999 7788999999999999999765544555568999999999999999999999999999986433


Q ss_pred             hHHHH--HHHhCchHHHHHhhCCCCc-cchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHH
Q 009568          277 DKIQA--VIEAGVCPRLVELLGHPSP-SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI  353 (532)
Q Consensus       277 ~~~~~--~~~~~~l~~L~~lL~~~~~-~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L  353 (532)
                      .....  ....+++++|+.+|.++.. ..+..|+++|+||+.+++...+.+++.|+++.|..+|.+. ++.+++.|+|+|
T Consensus       569 p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~-~~~Vq~~A~~~L  647 (810)
T 3now_A          569 PEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED-HLYLTRAAAQCL  647 (810)
T ss_dssp             HHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC-CTTHHHHHHHHH
T ss_pred             hhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHH
Confidence            22110  0123689999999986533 3356899999999999888888899999999999999998 999999999999


Q ss_pred             HHHhcCCHHHHHHHHH-cCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHH-cCChHHHHhhcCCCCHHHH
Q 009568          354 SNITAGNRDQIQAVID-AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVR-EGCIKPLCDLFVCPDPRIV  431 (532)
Q Consensus       354 ~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~-~~~l~~L~~lL~~~d~~v~  431 (532)
                      +|++.+. +....+++ .|.++.|+.++.+++..+|+.|+|+|+|++.+ ++.....+++ .|+++.|+.+|.+++.+++
T Consensus       648 ~NLa~~~-~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~-s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq  725 (810)
T 3now_A          648 CNLVMSE-DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSV-SVKCCEKILAIASWLDILHTLIANPSPAVQ  725 (810)
T ss_dssp             HHHTTSH-HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-CHHHHHHHHTSTTHHHHHHHHHTCSSHHHH
T ss_pred             HHHhCCh-HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-CHHHHHHHHHHcCCHHHHHHHHCCCCHHHH
Confidence            9999864 45556664 78999999999999999999999999999986 5677888888 8999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcC---CCHHHHHHHHHHHHHhCCCC
Q 009568          432 TVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSH---DNNEIYEKAVKILETYWLEE  500 (532)
Q Consensus       432 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~---~~~~v~~~a~~il~~~~~~~  500 (532)
                      ..++++|.|+...+.             .....+.+.|+++.|..|...   .+.++++.|.++|+......
T Consensus       726 ~~A~~aL~NL~~~s~-------------e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g  784 (810)
T 3now_A          726 HRGIVIILNMINAGE-------------EIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYR  784 (810)
T ss_dssp             HHHHHHHHHHHTTCH-------------HHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCH-------------HHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCC
Confidence            999999999987432             246788899999999999644   48999999999999876543

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=6.3e-38  Score=317.65  Aligned_cols=361  Identities=17%  Similarity=0.187  Sum_probs=302.8

Q ss_pred             cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCc-hhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPP-IEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (532)
Q Consensus        75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~-~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  153 (532)
                      .+|.++..|.++++.++..|+..|++++..  +++ ...+++.|++|.|+++|.+++ +.++..|+|+|.|++.++++++
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~--~~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k   79 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQ--DESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNK   79 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSS--CSSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcC--ChHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHH
Confidence            579999999999999999999999999864  444 448889999999999999988 9999999999999999889999


Q ss_pred             HHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhh--------h-------hhh
Q 009568          154 KVVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE--------R-------AKL  217 (532)
Q Consensus       154 ~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~--------~-------~~~  217 (532)
                      ..+++.|++|.|+++|. ++++.+++.++|+|+||+.+ +..+..+.+ |++++|+.++..        .       .++
T Consensus        80 ~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~  157 (457)
T 1xm9_A           80 LETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDP  157 (457)
T ss_dssp             HHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCH
T ss_pred             HHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccH
Confidence            99999999999999999 78999999999999999988 668888888 999999999931        1       246


Q ss_pred             HHHHHHHHHhhhccCCCCCCCccccc-chHHHHHHhhcC------CCHHHHHHHHHHHHHhccCC---------------
Q 009568          218 SMLRNATWTLSNFCRGKPQPPFDQVR-PALPALAQLVHS------NDEEVLTDACWALSYLSDGT---------------  275 (532)
Q Consensus       218 ~~~~~a~~~L~~L~~~~~~~~~~~~~-~~l~~L~~lL~~------~d~~v~~~a~~~L~~l~~~~---------------  275 (532)
                      .+++.++|+|+|||.++......... |++|.|+.+|.+      .+..++..++++|.+++...               
T Consensus       158 ~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~  237 (457)
T 1xm9_A          158 EVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA  237 (457)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccc
Confidence            78889999999999873222222333 899999999985      46678889999999886310               


Q ss_pred             -----------------------------------hhHHHHHHHhCchHHHHHhhCC-CCccchhhHHHHHHHhhcCCcc
Q 009568          276 -----------------------------------NDKIQAVIEAGVCPRLVELLGH-PSPSVLIPALRTVGNIVTGDDF  319 (532)
Q Consensus       276 -----------------------------------~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~~  319 (532)
                                                         +...+.+++.++++.|+.+|.+ .++.++..|+++|+||+.++..
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~  317 (457)
T 1xm9_A          238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL  317 (457)
T ss_dssp             ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred             ccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCc
Confidence                                               1112334456778889999865 4678999999999999988754


Q ss_pred             hh----HHHh-hcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCch------hHH
Q 009568          320 QT----QCII-TYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEF------DIK  388 (532)
Q Consensus       320 ~~----~~~~-~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~------~v~  388 (532)
                      ..    +.++ +.|++|.|+.+|.++ +..++++|+|+|+|++.+.  ..+.++..+++|.|+++|..+++      ++.
T Consensus       318 ~~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~~~--~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~  394 (457)
T 1xm9_A          318 MSSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRHP--LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDIL  394 (457)
T ss_dssp             HHHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSG--GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHH
T ss_pred             chHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhcCH--HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHH
Confidence            32    3334 689999999999999 9999999999999999853  34567777899999999998643      688


Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCC-CHHHHHHHHHHHHHHHHh
Q 009568          389 KEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCP-DPRIVTVCLEGLENILKV  444 (532)
Q Consensus       389 ~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~-d~~v~~~al~~L~~l~~~  444 (532)
                      ..++++|.|++.+ +++....+.+.|+++.|+.++.++ +++++..|.++|.+++..
T Consensus       395 ~~~l~~l~ni~~~-~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~  450 (457)
T 1xm9_A          395 SSACYTVRNLMAS-QPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS  450 (457)
T ss_dssp             HHHHHHHHHHHTT-CTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred             HHHHHHHHHHHhc-CHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcc
Confidence            8999999999876 457788888899999999999999 999999999999998754

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=3.6e-36  Score=312.34  Aligned_cols=369  Identities=25%  Similarity=0.356  Sum_probs=326.2

Q ss_pred             ccHHHHHhhhcCC-ChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009568           74 ESLPAMVAGVWSD-DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN  152 (532)
Q Consensus        74 ~~l~~lv~~L~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~  152 (532)
                      +.+|.|++.|.++ ++.++..|+++|.+++... ......++..|++|.|+.+|.+++ +.++..|+|+|++++..+++.
T Consensus       130 g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~vr~~A~~aL~~l~~~~~~~  207 (530)
T 1wa5_B          130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTDY  207 (530)
T ss_dssp             TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCccc
Confidence            6799999999997 8999999999999999853 345667778999999999999887 999999999999999988899


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccC
Q 009568          153 TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR  232 (532)
Q Consensus       153 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~  232 (532)
                      +..++..|+++.|+.++.+.+..++..++|+|++++.............++++.|+.++ .+.++.++..++|+|.+|+.
T Consensus       208 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~~  286 (530)
T 1wa5_B          208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSD  286 (530)
T ss_dssp             HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHS
T ss_pred             hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999976522234455678999999999 67788999999999999998


Q ss_pred             CCCC-CCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHH
Q 009568          233 GKPQ-PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVG  311 (532)
Q Consensus       233 ~~~~-~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~  311 (532)
                      ..+. .......+++|.|+.++.++++.++..++++|++++.+.+.....+++.|+++.|+.+|.++++.++..|+++|+
T Consensus       287 ~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~  366 (530)
T 1wa5_B          287 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS  366 (530)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            7422 222233589999999999999999999999999999988888888899999999999999999999999999999


Q ss_pred             HhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCH--HHHHHHHHcCCHHHHHHHHhcCchhHH
Q 009568          312 NIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNR--DQIQAVIDAGLVGPLVNLLQNAEFDIK  388 (532)
Q Consensus       312 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~--~~~~~l~~~~~i~~L~~ll~~~~~~v~  388 (532)
                      +++.+++...+.+++.|+++.|+.+|.++ ++.++..|+|+|+|++. +.+  +....+++.|+++.|+.++.+.++.++
T Consensus       367 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~  445 (530)
T 1wa5_B          367 NITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII  445 (530)
T ss_dssp             HHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHH
Confidence            99998887888888999999999999988 99999999999999997 455  788889999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCH----------HHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 009568          389 KEAAWAISNATSGGTH----------EQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGE  446 (532)
Q Consensus       389 ~~a~~aL~nl~~~~~~----------~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~  446 (532)
                      ..|+++|.+++..+..          .....+.+.|+++.|..++.+++++++..+..+|.+++...+
T Consensus       446 ~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~  513 (530)
T 1wa5_B          446 EVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEE  513 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC
T ss_pred             HHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence            9999999999875322          245667789999999999999999999999999999986543

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=1.5e-36  Score=309.01  Aligned_cols=367  Identities=25%  Similarity=0.330  Sum_probs=323.2

Q ss_pred             ccHHHHHhhhcCC-ChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009568           74 ESLPAMVAGVWSD-DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN  152 (532)
Q Consensus        74 ~~l~~lv~~L~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~  152 (532)
                      +.++.+++.|+++ ++.++..|++.|.+++... ......+++.|++|.|+++|.+++ +.++..|+|+|++++..+++.
T Consensus        64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~~  141 (450)
T 2jdq_A           64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTMC  141 (450)
T ss_dssp             THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHHH
Confidence            4689999999998 8999999999999999853 344566778999999999999987 999999999999999988889


Q ss_pred             HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhc
Q 009568          153 TKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF  230 (532)
Q Consensus       153 ~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L  230 (532)
                      +..+++.|+++.|+.++.+ .+..++..++|+|++++... +..+... ..++++.|+.++ .+.++.++..++|+|.++
T Consensus       142 ~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l  219 (450)
T 2jdq_A          142 RDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLL-FVSDTDVLADACWALSYL  219 (450)
T ss_dssp             HHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHH-ccCCHHHHHHHHHHHHHH
Confidence            9999999999999999996 78999999999999999765 3332222 378899999999 677889999999999999


Q ss_pred             cCCCC-CCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHH
Q 009568          231 CRGKP-QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT  309 (532)
Q Consensus       231 ~~~~~-~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~  309 (532)
                      +...+ ........+++|.|+.++.++++.++..++++|++++...+...+.+++.|+++.|+.+|.++++.++..|+++
T Consensus       220 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~  299 (450)
T 2jdq_A          220 SDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT  299 (450)
T ss_dssp             TSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             HCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHH
Confidence            98752 22223346899999999999999999999999999999888887888889999999999999999999999999


Q ss_pred             HHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHhcCchhHH
Q 009568          310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG-NRDQIQAVIDAGLVGPLVNLLQNAEFDIK  388 (532)
Q Consensus       310 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  388 (532)
                      |++++.+++...+.+++.|+++.|+.+|.++ ++.+|..|+|+|+|++.+ +++.++.+++.|+++.|+.++.+++++++
T Consensus       300 L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  378 (450)
T 2jdq_A          300 ISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIV  378 (450)
T ss_dssp             HHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHH
Confidence            9999998888888888899999999999988 999999999999999974 78888889999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCH----------HHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 009568          389 KEAAWAISNATSGGTH----------EQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG  445 (532)
Q Consensus       389 ~~a~~aL~nl~~~~~~----------~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~  445 (532)
                      ..|+++|.+++..+..          .....+.+.|+++.|..++.++++.++..++.+|.+++...
T Consensus       379 ~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~  445 (450)
T 2jdq_A          379 QVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTE  445 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence            9999999999875332          23466778899999999999999999999999999998543

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=4.8e-36  Score=311.44  Aligned_cols=366  Identities=25%  Similarity=0.354  Sum_probs=326.2

Q ss_pred             ccHHHHHhhhcCCC-hHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009568           74 ESLPAMVAGVWSDD-SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN  152 (532)
Q Consensus        74 ~~l~~lv~~L~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~  152 (532)
                      +.+|.|++.|.+++ +.++..|+++|.++++.. ......++..|++|.|+.+|.+++ +.++..|+|+|++++..++..
T Consensus       117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~aL~~l~~~~~~~  194 (528)
T 4b8j_A          117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-SENTKVVIDHGAVPIFVKLLGSSS-DDVREQAVWALGNVAGDSPKC  194 (528)
T ss_dssp             TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHTCHHH
T ss_pred             CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHhCCcHHHHHHHhcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence            67999999999887 999999999999999853 455677889999999999999987 999999999999999988889


Q ss_pred             HHHHHhCCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhcc
Q 009568          153 TKVVIDHGAVPIFVKLL-ASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFC  231 (532)
Q Consensus       153 ~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~  231 (532)
                      +..+.+.|+++.|+.+| .+.+..++..++|+|++++...+.. ......++++.|+.++ .+.++.++..++|+|++++
T Consensus       195 ~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~  272 (528)
T 4b8j_A          195 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP-SFEQTRPALPALARLI-HSNDEEVLTDACWALSYLS  272 (528)
T ss_dssp             HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC-CHHHHTTHHHHHHHHT-TCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999 5688999999999999999875443 3344578999999999 7788999999999999999


Q ss_pred             CCCCCC-CcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCC-CccchhhHHHH
Q 009568          232 RGKPQP-PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP-SPSVLIPALRT  309 (532)
Q Consensus       232 ~~~~~~-~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~al~~  309 (532)
                      ...+.. ......+++|.|+.+|.++++.++..++++|++++.+.+...+.+++.|+++.|+.+|.++ ++.++..|+++
T Consensus       273 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~  352 (528)
T 4b8j_A          273 DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWT  352 (528)
T ss_dssp             SSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHH
Confidence            875221 2333468999999999999999999999999999998888888899999999999999998 89999999999


Q ss_pred             HHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHhcCchhHH
Q 009568          310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG-NRDQIQAVIDAGLVGPLVNLLQNAEFDIK  388 (532)
Q Consensus       310 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  388 (532)
                      |+||+.+++.....+++.|+++.|+.+|.+. ++.++..|+|+|+|++.+ +++....+++.|+++.|+.++..++++++
T Consensus       353 L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~  431 (528)
T 4b8j_A          353 ISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIV  431 (528)
T ss_dssp             HHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred             HHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHH
Confidence            9999998888888899999999999999988 999999999999999984 78889999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCH----------HHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 009568          389 KEAAWAISNATSGGTH----------EQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV  444 (532)
Q Consensus       389 ~~a~~aL~nl~~~~~~----------~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~  444 (532)
                      ..|+++|.+++..+..          .....+.+.|+++.+..+..++++++...+..++.+++..
T Consensus       432 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~  497 (528)
T 4b8j_A          432 TVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMD  497 (528)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence            9999999999874322          2466777889999999999999999999999999988754

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=4.5e-36  Score=304.98  Aligned_cols=365  Identities=19%  Similarity=0.201  Sum_probs=302.2

Q ss_pred             ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC-Chhh
Q 009568           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASG-TSEN  152 (532)
Q Consensus        74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~-~~~~  152 (532)
                      ..++.+++.|.++++.++..|+..|++++... .+....+++.|+||.|+++|.+++ ++++..|+|+|.||+.+ ++++
T Consensus        48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~n  125 (584)
T 3l6x_A           48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQDN  125 (584)
T ss_dssp             CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHHH
T ss_pred             ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHHH
Confidence            47899999999999999999999999998753 566778889999999999999988 99999999999999985 6999


Q ss_pred             HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhh-----------------h
Q 009568          153 TKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE-----------------R  214 (532)
Q Consensus       153 ~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~-----------------~  214 (532)
                      +..+++.|+|+.|+.+|.+ .+..+++.++++|+||+. .+..+..+.+ +++++|+.++..                 .
T Consensus       126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~  203 (584)
T 3l6x_A          126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHI  203 (584)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CC
T ss_pred             HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhccccccccccccccccccc
Confidence            9999999999999999987 678999999999999987 4567777775 579999998721                 1


Q ss_pred             hhhHHHHHHHHHhhhccCCCCC-CCcc-cccchHHHHHHhhcC------CCHHHHHHHHHHHHHhccCChhH--------
Q 009568          215 AKLSMLRNATWTLSNFCRGKPQ-PPFD-QVRPALPALAQLVHS------NDEEVLTDACWALSYLSDGTNDK--------  278 (532)
Q Consensus       215 ~~~~~~~~a~~~L~~L~~~~~~-~~~~-~~~~~l~~L~~lL~~------~d~~v~~~a~~~L~~l~~~~~~~--------  278 (532)
                      .++.++.+++|+|.||+...+. .... ...++++.|+.++++      .+...++.++|+|.||+......        
T Consensus       204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~  283 (584)
T 3l6x_A          204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ  283 (584)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred             ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence            2578999999999999987532 2222 236778899999874      46789999999999998652110        


Q ss_pred             -----------------HHHHHHhCchHHHHHhhC-CCCccchhhHHHHHHHhhcCCcch----hHHHhhcCchHHHHHH
Q 009568          279 -----------------IQAVIEAGVCPRLVELLG-HPSPSVLIPALRTVGNIVTGDDFQ----TQCIITYGALPYLLGL  336 (532)
Q Consensus       279 -----------------~~~~~~~~~l~~L~~lL~-~~~~~v~~~al~~L~nl~~~~~~~----~~~~~~~~~l~~L~~l  336 (532)
                                       +..+.+.++++.++.+|. ..++.++..|+++|.||+.+....    ...+.+.+++|.|+.+
T Consensus       284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L  363 (584)
T 3l6x_A          284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL  363 (584)
T ss_dssp             ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred             hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence                             111223355778888885 467889999999999999876422    2244557899999999


Q ss_pred             hcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--------chhHHHHHHHHHHHhhcCCCHHHHH
Q 009568          337 LTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA--------EFDIKKEAAWAISNATSGGTHEQIK  408 (532)
Q Consensus       337 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--------~~~v~~~a~~aL~nl~~~~~~~~~~  408 (532)
                      |.++ +..+++.|+|+|+||+.+...  +.++..|++|.|+.+|.++        ..+++..|+++|.|++.. ++++..
T Consensus       364 L~s~-~~~v~~~A~~aL~nLs~~~~~--~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~-~~~~~~  439 (584)
T 3l6x_A          364 LTNE-HERVVKAASGALRNLAVDARN--KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE-NLEAAK  439 (584)
T ss_dssp             GGCS-CHHHHHHHHHHHHHHHTTCSC--HHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT-CHHHHH
T ss_pred             HcCC-CHHHHHHHHHHHHHHhCChhH--HHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC-CHHHHH
Confidence            9998 999999999999999986432  3455788999999999876        357889999999999976 678899


Q ss_pred             HHHHcCChHHHHhhcCCC--CHHHHHHHHHHHHHHHHhhh
Q 009568          409 YLVREGCIKPLCDLFVCP--DPRIVTVCLEGLENILKVGE  446 (532)
Q Consensus       409 ~l~~~~~l~~L~~lL~~~--d~~v~~~al~~L~~l~~~~~  446 (532)
                      .+.+.|+++.|+.++.+.  .+.++..|.++|.++....+
T Consensus       440 ~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e  479 (584)
T 3l6x_A          440 KLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE  479 (584)
T ss_dssp             HHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred             HHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH
Confidence            999999999999999986  78999999999999986443

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=2.2e-34  Score=310.03  Aligned_cols=393  Identities=19%  Similarity=0.204  Sum_probs=335.3

Q ss_pred             ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (532)
Q Consensus        74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  153 (532)
                      +.++.|++.|+++++.++..|+.+|.+++... ......+.+.|++|.|+++|.+++ ..++..|+.+|.+++.++++.+
T Consensus       234 g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~e~~  311 (780)
T 2z6g_A          234 GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK  311 (780)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHHH
Confidence            67899999999999999999999999999863 344556668999999999999977 8999999999999998889999


Q ss_pred             HHHHhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccC
Q 009568          154 KVVIDHGAVPIFVKLLASPS-DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR  232 (532)
Q Consensus       154 ~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~  232 (532)
                      ..+++.|+++.|+.+|.+.+ ...++.++.+|.+++.. +..+..+.+.|+++.|+.++ .+.+..+++.++|+|.+|+.
T Consensus       312 ~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~~  389 (780)
T 2z6g_A          312 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD  389 (780)
T ss_dssp             HHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-TTHHHHHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHHHHHHHHhchHHHHHHHH-cCCchHHHHHHHHHHHHHhc
Confidence            99999999999999998754 56677899999999864 45788888999999999999 56678899999999999998


Q ss_pred             CCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCC-CCc-cchhhHHHHH
Q 009568          233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PSP-SVLIPALRTV  310 (532)
Q Consensus       233 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~-~v~~~al~~L  310 (532)
                      ..+.  .....++++.|+.++.+.++.++..++|+|++++...+.....+.+.|+++.|+.+|.+ .+. .++..|+++|
T Consensus       390 ~~~~--~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL  467 (780)
T 2z6g_A          390 AATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  467 (780)
T ss_dssp             TCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            7633  33457899999999999999999999999999999888888889999999999999976 333 8999999999


Q ss_pred             HHhhcCCcch---hHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchh-
Q 009568          311 GNIVTGDDFQ---TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFD-  386 (532)
Q Consensus       311 ~nl~~~~~~~---~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~-  386 (532)
                      +||+......   ...+...++++.|+.+|.++..+.+++.|+|+|+|++.+... ...+.+.|+++.|+.++.+++++ 
T Consensus       468 ~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~  546 (780)
T 2z6g_A          468 RHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAHQDT  546 (780)
T ss_dssp             HHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHH-HHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHH-HHHHHHCCCHHHHHHHHHhcchhH
Confidence            9998765432   346778899999999999883359999999999999986444 47788999999999999876544 


Q ss_pred             ---------------------HHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 009568          387 ---------------------IKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG  445 (532)
Q Consensus       387 ---------------------v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~  445 (532)
                                           ++..++.+|++++.  ++.....+.+.|+++.|+.+|.++++.++..++.+|.++... 
T Consensus       547 ~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~-  623 (780)
T 2z6g_A          547 QRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR--DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-  623 (780)
T ss_dssp             HHTTC------CCSTTCCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS-
T ss_pred             HHHHhhccccchhhcccChHHHHHHHHHHHHHHhc--ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-
Confidence                                 45556666666764  455666678899999999999999999999999999999632 


Q ss_pred             hhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHH
Q 009568          446 EAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKA  489 (532)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a  489 (532)
                                   ..+...+.+.|+++.|..|+++++++|+..|
T Consensus       624 -------------~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A  654 (780)
T 2z6g_A          624 -------------KEAAEAIEAEGATAPLTELLHSRNEGVATYA  654 (780)
T ss_dssp             -------------HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHH
T ss_pred             -------------HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence                         2357889999999999999999999996553

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=1.7e-35  Score=300.78  Aligned_cols=372  Identities=19%  Similarity=0.210  Sum_probs=307.0

Q ss_pred             HhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-
Q 009568          112 EVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD-  190 (532)
Q Consensus       112 ~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~-  190 (532)
                      .-...+.+|.||++|.+++ ++++..|+++|.+++.++++++..+++.|+||.|+.+|.+++..+++.|+|+|.||+.. 
T Consensus        43 ~~~~~~~i~~LV~~L~s~~-~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~  121 (584)
T 3l6x_A           43 PNWRQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGR  121 (584)
T ss_dssp             CCCCCCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSS
T ss_pred             CCcccccHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccC
Confidence            3346778999999999988 99999999999999998999999999999999999999999999999999999999985 


Q ss_pred             CchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhc----------------
Q 009568          191 SPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH----------------  254 (532)
Q Consensus       191 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~----------------  254 (532)
                      ++..+..+.+.|++++|+.+|....+..+++.++++|++|+.... .......+++|.|++++.                
T Consensus       122 ~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~-~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~  200 (584)
T 3l6x_A          122 DQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDS-IKMEIVDHALHALTDEVIIPHSGWEREPNEDCKP  200 (584)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGG-GHHHHHHHTHHHHHHHTHHHHHCCC---------
T ss_pred             CHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCch-hhHHHHhccHHHHHHHHhcccccccccccccccc
Confidence            688999999999999999999554678899999999999998643 333334678999999771                


Q ss_pred             --CCCHHHHHHHHHHHHHhccCChhHHHHHHHh-CchHHHHHhhCC------CCccchhhHHHHHHHhhcCCc-------
Q 009568          255 --SNDEEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLGH------PSPSVLIPALRTVGNIVTGDD-------  318 (532)
Q Consensus       255 --~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~v~~~al~~L~nl~~~~~-------  318 (532)
                        ..++.++..++++|.||+...++..+.+.+. |+++.|+.++.+      .+...+..|+++|.||+....       
T Consensus       201 ~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~  280 (584)
T 3l6x_A          201 RHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAE  280 (584)
T ss_dssp             -CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCC
T ss_pred             cccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchh
Confidence              2367999999999999998887766777764 667899999864      456788999999999996521       


Q ss_pred             ------------------chhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCH---HHHHHHH-HcCCHHHH
Q 009568          319 ------------------FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNR---DQIQAVI-DAGLVGPL  376 (532)
Q Consensus       319 ------------------~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~---~~~~~l~-~~~~i~~L  376 (532)
                                        .....+++.++++.++.+|.++.++.+++.|+|+|.|++.+..   ..++..+ +.+++|.|
T Consensus       281 ~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~L  360 (584)
T 3l6x_A          281 RYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAI  360 (584)
T ss_dssp             C--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHH
T ss_pred             hhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHH
Confidence                              1122233445677889999654488999999999999998652   2334344 46789999


Q ss_pred             HHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCC--------CHHHHHHHHHHHHHHHHhhhhh
Q 009568          377 VNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCP--------DPRIVTVCLEGLENILKVGEAE  448 (532)
Q Consensus       377 ~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~--------d~~v~~~al~~L~~l~~~~~~~  448 (532)
                      +.+|.+++..+++.|+|+|.|++.+...   ..++..|+++.|+.+|.+.        ..+++..++.+|.+|+..... 
T Consensus       361 v~LL~s~~~~v~~~A~~aL~nLs~~~~~---~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~-  436 (584)
T 3l6x_A          361 ADLLTNEHERVVKAASGALRNLAVDARN---KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLE-  436 (584)
T ss_dssp             HHGGGCSCHHHHHHHHHHHHHHHTTCSC---HHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHH-
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHhCChhH---HHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHH-
Confidence            9999999999999999999999986542   2334778999999999876        357888999999999865433 


Q ss_pred             hhccCCCccchHHHHHHHHhccHHHHHHHhcCC--CHHHHHHHHHHHHHhCCCCc
Q 009568          449 KNMGTATADVNQYAQLVEEAEGLEKIENLQSHD--NNEIYEKAVKILETYWLEED  501 (532)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~--~~~v~~~a~~il~~~~~~~~  501 (532)
                                  ....+.+.|+++.|..|..+.  .+.+.+.|.++|.+++...+
T Consensus       437 ------------~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e  479 (584)
T 3l6x_A          437 ------------AAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE  479 (584)
T ss_dssp             ------------HHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred             ------------HHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH
Confidence                        356778899999999998875  89999999999999987543

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=1.5e-34  Score=287.77  Aligned_cols=328  Identities=19%  Similarity=0.181  Sum_probs=276.5

Q ss_pred             hhhccHHHHHhhhcCC------------ChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcH----------HHHHHhhcC
Q 009568           71 TKLESLPAMVAGVWSD------------DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVV----------PRFVEFLMR  128 (532)
Q Consensus        71 ~~~~~l~~lv~~L~s~------------~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i----------~~Lv~lL~~  128 (532)
                      .+-+.+|.|++.|+..            +++++++|+++|.+++++. .+..+...+.|++          +.+++++.+
T Consensus        67 ~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  145 (458)
T 3nmz_A           67 RQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQ-PDDKRGRREIRVLHLLEQIRAYCETCWEWQEA  145 (458)
T ss_dssp             HHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Confidence            3457899999999964            3699999999999999975 5556666677777          777788876


Q ss_pred             CC-CHH-----HHH-------HHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHH
Q 009568          129 ED-YPQ-----LQF-------EAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-----------PSDDVREQAVWAL  184 (532)
Q Consensus       129 ~~-~~~-----~~~-------~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L  184 (532)
                      .. ..+     ++.       .|+|+|.|++. ++++++.+++.|++++|+.+|..           .++.+++.|+|+|
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL  224 (458)
T 3nmz_A          146 HEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMAL  224 (458)
T ss_dssp             TSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred             hccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHH
Confidence            42 112     444       89999999987 69999999999999999999942           3477999999999


Q ss_pred             HHhhCCCchhHHHHHh-cCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC--CCCCcccccchHHHHHHhh-cCCCHHH
Q 009568          185 GNVAGDSPRCRDLVLS-QGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK--PQPPFDQVRPALPALAQLV-HSNDEEV  260 (532)
Q Consensus       185 ~nl~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~--~~~~~~~~~~~l~~L~~lL-~~~d~~v  260 (532)
                      .||+.+.+..+..+.. .|++++|+.+| .+.+++++..++|+|.||+...  .........+++|.|+.+| .+.++.+
T Consensus       225 ~nLa~~~~~~k~~i~~~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v  303 (458)
T 3nmz_A          225 TNLTFGDVANKATLCSMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKEST  303 (458)
T ss_dssp             HHHHTTCHHHHHHHHHCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHH
T ss_pred             HHHhCCCcccHHHHHHcCCcHHHHHHHH-hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHH
Confidence            9999888777766654 56699999999 6788999999999999999852  2223344579999999975 5578899


Q ss_pred             HHHHHHHHHHhccCChhHHHHHH-HhCchHHHHHhhCCCCcc----chhhHHHHHHHhhc---CCcchhHHHhhcCchHH
Q 009568          261 LTDACWALSYLSDGTNDKIQAVI-EAGVCPRLVELLGHPSPS----VLIPALRTVGNIVT---GDDFQTQCIITYGALPY  332 (532)
Q Consensus       261 ~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~----v~~~al~~L~nl~~---~~~~~~~~~~~~~~l~~  332 (532)
                      +..++.+|++|+...++....+. ..|+++.|+.+|.+.+..    ++..|+++|.||+.   +++..++.+++.|+++.
T Consensus       304 ~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~  383 (458)
T 3nmz_A          304 LKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQT  383 (458)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHH
Confidence            99999999999984444444555 789999999999886653    89999999999997   77888889999999999


Q ss_pred             HHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCC
Q 009568          333 LLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGG  402 (532)
Q Consensus       333 L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~  402 (532)
                      |+.+|.++ +..++++|+|+|+|++.+++++...+++.|++|.|+.++.+++..+++.|+|+|.|++.+.
T Consensus       384 Lv~LL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          384 LLQHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             HHHHSSCS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHcCC-ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            99999998 9999999999999999888999999999999999999999999999999999999999864

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=6.7e-34  Score=295.63  Aligned_cols=403  Identities=16%  Similarity=0.162  Sum_probs=336.5

Q ss_pred             ccHHHHHhhhcC-CChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009568           74 ESLPAMVAGVWS-DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN  152 (532)
Q Consensus        74 ~~l~~lv~~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~  152 (532)
                      +.++.+++.|.+ +++.++..|+..|+++...  ..+...+.+.|++|.|+++|.+++ +.++..|+++|.+++..++..
T Consensus        59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~  135 (529)
T 1jdh_A           59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA  135 (529)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTH
T ss_pred             chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcch
Confidence            468999999975 4899999999999998764  346777889999999999999988 999999999999999977788


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccC
Q 009568          153 TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR  232 (532)
Q Consensus       153 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~  232 (532)
                      +..+.+.|+++.|+.+|.+++..++..++.+|.+++..++..+..+.+.|+++.|+.++....+......++.+|.+++.
T Consensus       136 ~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~  215 (529)
T 1jdh_A          136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  215 (529)
T ss_dssp             HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc
Confidence            88888999999999999999999999999999999998888899999999999999999666566778889999999997


Q ss_pred             CCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHH
Q 009568          233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN  312 (532)
Q Consensus       233 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~n  312 (532)
                      ...........++++.|+.++.++++.++..++|+|.+++...+...   ...++++.|+.++.++++.++..|+++|++
T Consensus       216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  292 (529)
T 1jdh_A          216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSN  292 (529)
T ss_dssp             STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            65433444457899999999999999999999999999997654321   123789999999999999999999999999


Q ss_pred             hhcCCcchhHHHhhcCchHHHHHHhcCC-CchhHHHHHHHHHHHHhcCCHH---HHHHHHHcCCHHHHHHHHhcCc-hhH
Q 009568          313 IVTGDDFQTQCIITYGALPYLLGLLTHS-HKKSIKKEACWTISNITAGNRD---QIQAVIDAGLVGPLVNLLQNAE-FDI  387 (532)
Q Consensus       313 l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~i~~L~~ll~~~~-~~v  387 (532)
                      ++.+++.....+.+.|+++.|+.+|.+. .++.++..|+++|+|++.++++   ....+.+.|+++.|+.++.+++ +.+
T Consensus       293 L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v  372 (529)
T 1jdh_A          293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL  372 (529)
T ss_dssp             HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred             HhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHH
Confidence            9998877888899999999999999763 1479999999999999886433   3557778999999999999876 599


Q ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHH----------------------HHHhh
Q 009568          388 KKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLEN----------------------ILKVG  445 (532)
Q Consensus       388 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~----------------------l~~~~  445 (532)
                      +..++|+|+|++.+.  .....+.+.|+++.|+.+|.+++++++..+.|++.+                      +... 
T Consensus       373 ~~~a~~~l~nl~~~~--~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~-  449 (529)
T 1jdh_A          373 IKATVGLIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD-  449 (529)
T ss_dssp             HHHHHHHHHHHTTSG--GGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTS-
T ss_pred             HHHHHHHHHHHhcCh--hhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcC-
Confidence            999999999999853  334677899999999999988777777766665554                      3221 


Q ss_pred             hhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009568          446 EAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL  498 (532)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~  498 (532)
                                   ......+.+.|+++.|..+..+++++++..|.+.+.++-.
T Consensus       450 -------------~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~  489 (529)
T 1jdh_A          450 -------------VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ  489 (529)
T ss_dssp             -------------HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred             -------------chHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhc
Confidence                         1134567889999999999999999999999999988754

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=8.7e-33  Score=293.21  Aligned_cols=403  Identities=17%  Similarity=0.176  Sum_probs=341.1

Q ss_pred             ccHHHHHhhhcCC-ChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009568           74 ESLPAMVAGVWSD-DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN  152 (532)
Q Consensus        74 ~~l~~lv~~L~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~  152 (532)
                      +.++.+++.|.++ ++.++..|+..|+++...  ......+.+.|++|.|+++|.+++ +.++..|+++|.+++...+..
T Consensus        56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~~  132 (644)
T 2z6h_A           56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA  132 (644)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS--HHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTTH
T ss_pred             ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcchh
Confidence            4589999999865 899999999999988764  346777889999999999999988 999999999999999877788


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccC
Q 009568          153 TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR  232 (532)
Q Consensus       153 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~  232 (532)
                      +..+.+.|+++.|+.+|.++++.++..++.+|.+++..++..+..+.+.|+++.|+.++.......++..++.+|.+|+.
T Consensus       133 ~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~  212 (644)
T 2z6h_A          133 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  212 (644)
T ss_dssp             HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc
Confidence            88899999999999999999999999999999999988888899999999999999999666567788999999999997


Q ss_pred             CCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHH
Q 009568          233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN  312 (532)
Q Consensus       233 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~n  312 (532)
                      ...........++++.|+.++.+.+..++..++|+|.+++......   ....++++.|+.+|.+.++.++..|+++|++
T Consensus       213 ~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~  289 (644)
T 2z6h_A          213 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN  289 (644)
T ss_dssp             CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            6544444455789999999999999999999999999999754332   1123789999999999999999999999999


Q ss_pred             hhcCCcchhHHHhhcCchHHHHHHhcCCCc-hhHHHHHHHHHHHHhcCCH--HHHH-HHHHcCCHHHHHHHHhcCc-hhH
Q 009568          313 IVTGDDFQTQCIITYGALPYLLGLLTHSHK-KSIKKEACWTISNITAGNR--DQIQ-AVIDAGLVGPLVNLLQNAE-FDI  387 (532)
Q Consensus       313 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~~v~~~a~~~L~nl~~~~~--~~~~-~l~~~~~i~~L~~ll~~~~-~~v  387 (532)
                      |+.+++..+..+.+.|+++.|+.+|.+..+ +.++..|+++|+|++..++  ...+ .+++.|+++.|+.+|.+.+ +.+
T Consensus       290 L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v  369 (644)
T 2z6h_A          290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL  369 (644)
T ss_dssp             HHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHH
T ss_pred             HHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHH
Confidence            999887788889999999999999986423 7999999999999997433  2333 4678899999999999874 699


Q ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCC----------------------HHHHHHHHHHHHHHHHhh
Q 009568          388 KKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPD----------------------PRIVTVCLEGLENILKVG  445 (532)
Q Consensus       388 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d----------------------~~v~~~al~~L~~l~~~~  445 (532)
                      ++.|+|+|+|++.+.  .....+.+.|+++.|+.+|...+                      .+++..++.+|.++....
T Consensus       370 ~~~a~~~L~nLa~~~--~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~  447 (644)
T 2z6h_A          370 IKATVGLIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV  447 (644)
T ss_dssp             HHHHHHHHHHHTTSG--GGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHHHHccCH--HHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCH
Confidence            999999999999853  33477789999999999997643                      456667777777776532


Q ss_pred             hhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009568          446 EAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL  498 (532)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~  498 (532)
                      .              ....+.+.|+++.|..+..+++++++..|...|.++..
T Consensus       448 ~--------------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~  486 (644)
T 2z6h_A          448 H--------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ  486 (644)
T ss_dssp             H--------------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             H--------------HHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            1              25567789999999999999999999999998887764

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=1.8e-32  Score=295.12  Aligned_cols=402  Identities=17%  Similarity=0.180  Sum_probs=338.0

Q ss_pred             ccHHHHHhhhcCC-ChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009568           74 ESLPAMVAGVWSD-DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN  152 (532)
Q Consensus        74 ~~l~~lv~~L~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~  152 (532)
                      +.++.|++.|.++ ++.++..|+..|+++...  ......+.+.|++|.|+++|++++ +.++..|+++|.+++...++.
T Consensus       192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~--~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~  268 (780)
T 2z6g_A          192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHH--REGLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEGA  268 (780)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTH
T ss_pred             ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence            4688899999854 899999999999997664  345677888999999999999988 999999999999999977888


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccC
Q 009568          153 TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR  232 (532)
Q Consensus       153 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~  232 (532)
                      +..+.+.|+++.|+.+|.+++..++..++.+|.+++..++..+..+.+.|+++.|+.++...........++.+|.+|+.
T Consensus       269 ~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~  348 (780)
T 2z6g_A          269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  348 (780)
T ss_dssp             HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence            88898999999999999999999999999999999988888899999999999999999655556677788999999997


Q ss_pred             CCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHH
Q 009568          233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN  312 (532)
Q Consensus       233 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~n  312 (532)
                      ...........++++.|+.++.+.+..++..++|+|.+++......   ....++++.|+.+|.+.++.++..|+++|++
T Consensus       349 ~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~  425 (780)
T 2z6g_A          349 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN  425 (780)
T ss_dssp             STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            6443344445789999999999999999999999999999765432   1123689999999999999999999999999


Q ss_pred             hhcCCcchhHHHhhcCchHHHHHHhcCCCc-hhHHHHHHHHHHHHhcCCHH---HHHHHHHcCCHHHHHHHHhcCch-hH
Q 009568          313 IVTGDDFQTQCIITYGALPYLLGLLTHSHK-KSIKKEACWTISNITAGNRD---QIQAVIDAGLVGPLVNLLQNAEF-DI  387 (532)
Q Consensus       313 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~i~~L~~ll~~~~~-~v  387 (532)
                      |+.+++.....+++.|+++.|+.+|.+..+ ..++..|+++|+||+..+++   ....+...++++.|+.+|.+++. .+
T Consensus       426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v  505 (780)
T 2z6g_A          426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPL  505 (780)
T ss_dssp             HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred             HHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHH
Confidence            999888888889999999999999976313 48999999999999875433   23466788999999999998764 99


Q ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCC----------------------HHHHHHHHHHHHHHHHhh
Q 009568          388 KKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPD----------------------PRIVTVCLEGLENILKVG  445 (532)
Q Consensus       388 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d----------------------~~v~~~al~~L~~l~~~~  445 (532)
                      ++.|+|+|+|++.+  +.....+.+.|+++.|+.+|.+.+                      ++++..++.+|.++....
T Consensus       506 ~~~A~~aL~nLa~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~  583 (780)
T 2z6g_A          506 IKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDI  583 (780)
T ss_dssp             HHHHHHHHHHHHSS--HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHHHHhcC--HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcCh
Confidence            99999999999974  444577888999999999997543                      345666777777775321


Q ss_pred             hhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009568          446 EAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW  497 (532)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~  497 (532)
                                    .....+.+.|+++.|..+..+++++++..|...|.++.
T Consensus       584 --------------~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~  621 (780)
T 2z6g_A          584 --------------HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA  621 (780)
T ss_dssp             --------------HHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             --------------hhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence                          12456788999999999999999999999998887764

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=3.6e-30  Score=249.09  Aligned_cols=273  Identities=20%  Similarity=0.203  Sum_probs=237.2

Q ss_pred             CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhh----------hhhhHHHHHHHHHhhhccCCCCCCCccc
Q 009568          172 PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE----------RAKLSMLRNATWTLSNFCRGKPQPPFDQ  241 (532)
Q Consensus       172 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~----------~~~~~~~~~a~~~L~~L~~~~~~~~~~~  241 (532)
                      +......+|+|+|+|++.+ +.+|+.+.+.|++++|+.+|..          ..++.+++.++|+|.||+.+.+......
T Consensus        44 ~~~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i  122 (354)
T 3nmw_A           44 PVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATL  122 (354)
T ss_dssp             GGGGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            4456677999999999987 6799999999999999999942          2357899999999999998863222222


Q ss_pred             --ccchHHHHHHhhcCCCHHHHHHHHHHHHHhccC-ChhHHHHHHHhCchHHHHHhh-CCCCccchhhHHHHHHHhhcCC
Q 009568          242 --VRPALPALAQLVHSNDEEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELL-GHPSPSVLIPALRTVGNIVTGD  317 (532)
Q Consensus       242 --~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~al~~L~nl~~~~  317 (532)
                        ..+++|.|+.+|.+++++++..++|+|.+|+.. +++....+.+.|+++.|+.+| .+.+..++..|+.+|+||+...
T Consensus       123 ~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~  202 (354)
T 3nmw_A          123 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC  202 (354)
T ss_dssp             HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccC
Confidence              456799999999999999999999999999985 556678888999999999975 6678889999999999999866


Q ss_pred             cchhHHHh-hcCchHHHHHHhcCCCch----hHHHHHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHHHHhcCchhHHH
Q 009568          318 DFQTQCII-TYGALPYLLGLLTHSHKK----SIKKEACWTISNITA---GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKK  389 (532)
Q Consensus       318 ~~~~~~~~-~~~~l~~L~~lL~~~~~~----~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~  389 (532)
                      +.....+. ..|+++.|+.+|.+. ++    .+++.|+|+|.|++.   ++++..+.+.+.|+++.|+.+|.+++..+++
T Consensus       203 ~~nk~~i~~~~Gai~~Lv~lL~~~-~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~  281 (354)
T 3nmw_A          203 TENKADICAVDGALAFLVGTLTYR-SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVS  281 (354)
T ss_dssp             HHHHHHHHHSTTHHHHHHHHTTCC-CSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHH
T ss_pred             hhhhHHHHHhcCcHHHHHHHhccC-CCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHH
Confidence            55555555 789999999999876 43    499999999999997   7889999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 009568          390 EAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEA  447 (532)
Q Consensus       390 ~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~  447 (532)
                      +|+|+|.|++.. ++++...+.+.|+++.|+++|.++++.++..+.++|.+|+...+.
T Consensus       282 ~A~~aL~nLa~~-~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~  338 (354)
T 3nmw_A          282 NACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA  338 (354)
T ss_dssp             HHHHHHHHHTSS-CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred             HHHHHHHHHhCC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence            999999999865 678889999999999999999999999999999999999986544

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=2.1e-30  Score=250.74  Aligned_cols=270  Identities=21%  Similarity=0.189  Sum_probs=234.4

Q ss_pred             HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHHhhCCCchhHHHHHh
Q 009568          132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-----------PSDDVREQAVWALGNVAGDSPRCRDLVLS  200 (532)
Q Consensus       132 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~  200 (532)
                      ...+..|+|+|.|++. ++++++.+++.|+++.|+.+|..           .++.+++.|+|+|.||+...+..+..+..
T Consensus        46 ~~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~  124 (354)
T 3nmw_A           46 EHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS  124 (354)
T ss_dssp             GGTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3556689999999999 58999999999999999999942           24789999999999999888777777754


Q ss_pred             -cCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC--CCCCcccccchHHHHHHhh-cCCCHHHHHHHHHHHHHhccCCh
Q 009568          201 -QGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK--PQPPFDQVRPALPALAQLV-HSNDEEVLTDACWALSYLSDGTN  276 (532)
Q Consensus       201 -~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~--~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~l~~~~~  276 (532)
                       .|++++|+.+| .+.+++++..++|+|.||+...  .........+++|.|+++| .+.++.++..++++|++|+...+
T Consensus       125 ~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~  203 (354)
T 3nmw_A          125 MKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT  203 (354)
T ss_dssp             CHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred             cCCcHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence             56699999999 6788999999999999999852  2233344579999999975 56789999999999999998665


Q ss_pred             hHHHHHH-HhCchHHHHHhhCCCCc----cchhhHHHHHHHhhc---CCcchhHHHhhcCchHHHHHHhcCCCchhHHHH
Q 009568          277 DKIQAVI-EAGVCPRLVELLGHPSP----SVLIPALRTVGNIVT---GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKE  348 (532)
Q Consensus       277 ~~~~~~~-~~~~l~~L~~lL~~~~~----~v~~~al~~L~nl~~---~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~  348 (532)
                      +....+. ..|+++.|+.+|.++++    .++..|+++|.|++.   +++..++.+.+.|+++.|+.+|.++ +..+++.
T Consensus       204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~  282 (354)
T 3nmw_A          204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSN  282 (354)
T ss_dssp             HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHH
T ss_pred             hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHH
Confidence            5545555 78999999999987654    389999999999997   6778888999999999999999998 9999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCH
Q 009568          349 ACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTH  404 (532)
Q Consensus       349 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~  404 (532)
                      |+|+|+|++.+++++.+.+++.|++|.|+.++.+++..+++.|+++|.|++.+...
T Consensus       283 A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~  338 (354)
T 3nmw_A          283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA  338 (354)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred             HHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence            99999999988899999999999999999999999999999999999999987543

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.96  E-value=6.7e-27  Score=218.20  Aligned_cols=242  Identities=34%  Similarity=0.518  Sum_probs=217.3

Q ss_pred             CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q 009568          117 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD  196 (532)
Q Consensus       117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~  196 (532)
                      |.+|.|+++|.+++ ++++..|+++|.+++..+++.+..+++.|+++.|+.+|.++++.++..++++|++++.+.+..+.
T Consensus         2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~   80 (252)
T 4hxt_A            2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK   80 (252)
T ss_dssp             CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence            67999999999998 99999999999999998888999999999999999999999999999999999999988788888


Q ss_pred             HHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh
Q 009568          197 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN  276 (532)
Q Consensus       197 ~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~  276 (532)
                      .+.+.|+++.++.++                                          .++++.++..++++|++++...+
T Consensus        81 ~~~~~~~i~~l~~ll------------------------------------------~~~~~~v~~~a~~~L~~l~~~~~  118 (252)
T 4hxt_A           81 AIVDAGGVEVLVKLL------------------------------------------TSTDSEVQKEAARALANIASGPD  118 (252)
T ss_dssp             HHHHTTHHHHHHHHT------------------------------------------TCSSHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHCCCHHHHHHHH------------------------------------------cCCCHHHHHHHHHHHHHHHcCCH
Confidence            777776666655555                                          44556677777777777776666


Q ss_pred             hHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHH
Q 009568          277 DKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNI  356 (532)
Q Consensus       277 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl  356 (532)
                      .....+.+.|+++.|+.++.++++.++..++++|++++.+.+.....+.+.|+++.|+.++.++ ++.++..|+|+|+++
T Consensus       119 ~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l  197 (252)
T 4hxt_A          119 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANI  197 (252)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHH
Confidence            6667788889999999999999999999999999999998887778899999999999999988 999999999999999


Q ss_pred             hcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCC
Q 009568          357 TAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGG  402 (532)
Q Consensus       357 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~  402 (532)
                      +.+++...+.+.+.|+++.|+.++.+++++++..|+++|.|++...
T Consensus       198 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  243 (252)
T 4hxt_A          198 ASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG  243 (252)
T ss_dssp             TTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred             HcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence            9988999999999999999999999999999999999999998754

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.95  E-value=3e-27  Score=220.68  Aligned_cols=239  Identities=36%  Similarity=0.560  Sum_probs=220.0

Q ss_pred             CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q 009568          117 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD  196 (532)
Q Consensus       117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~  196 (532)
                      ...+.++++|.+++ ++++..|+++|.++...+++.+..+++.|+++.|+.+|.++++.++..|+++|++++.+.+..+.
T Consensus        12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (252)
T 4db8_A           12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (252)
T ss_dssp             CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            46899999999998 89999999999887766778888999999999999999999999999999999999998888999


Q ss_pred             HHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCC-CcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCC
Q 009568          197 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP-PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT  275 (532)
Q Consensus       197 ~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~  275 (532)
                      .+.+.|+++.|+.++ .+.++.++..++|+|.+|+.+.+.. ......+++|.|+.++.++++.++..++|+|++++...
T Consensus        91 ~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  169 (252)
T 4db8_A           91 AVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG  169 (252)
T ss_dssp             HHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999999999 6678999999999999999886443 44555789999999999999999999999999999988


Q ss_pred             hhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHH
Q 009568          276 NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN  355 (532)
Q Consensus       276 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n  355 (532)
                      +.....+.+.|+++.|+.+|.++++.++..|+++|++++.+++.....+++.|+++.|+.++.+. ++.++..|+|+|+|
T Consensus       170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~  248 (252)
T 4db8_A          170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEK  248 (252)
T ss_dssp             HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHT
T ss_pred             hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence            88888889999999999999999999999999999999988888888899999999999999998 99999999999999


Q ss_pred             Hhc
Q 009568          356 ITA  358 (532)
Q Consensus       356 l~~  358 (532)
                      ++.
T Consensus       249 l~~  251 (252)
T 4db8_A          249 LQS  251 (252)
T ss_dssp             TC-
T ss_pred             Hhc
Confidence            974

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.95  E-value=1.1e-26  Score=218.78  Aligned_cols=235  Identities=17%  Similarity=0.164  Sum_probs=202.2

Q ss_pred             HHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHH-hhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHH
Q 009568          258 EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE-LLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGL  336 (532)
Q Consensus       258 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~-lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~l  336 (532)
                      .+-+..|+..|.+++...+ ....+.+.|+++.|+. +|.++++.++..|+++|++++.+++..++.+++.|+++.|+.+
T Consensus        54 ~e~k~~Al~~L~~lv~~~d-na~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           54 QQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhChh-hHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            4567888999999997644 5566888999999999 9999999999999999999999999888899999999999999


Q ss_pred             hcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCCh
Q 009568          337 LTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCI  416 (532)
Q Consensus       337 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l  416 (532)
                      |.++.+..+++.|+|+|+|++.+++...+.+.+.|+++.|+.+|.++++.++..|+|+|++++.+ +++.+..+++.|++
T Consensus       133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i  211 (296)
T 1xqr_A          133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMV  211 (296)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHH
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCH
Confidence            98543789999999999999999999888999999999999999999999999999999999987 66788899999999


Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCC-CHHHHHHHHHHHHH
Q 009568          417 KPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHD-NNEIYEKAVKILET  495 (532)
Q Consensus       417 ~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~-~~~v~~~a~~il~~  495 (532)
                      +.|+.+|.++++.++..++.+|.+|+...+........  ..+.+...+++     .++.++.++ +.++|++|..|+++
T Consensus       212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~--~~~~l~~lL~~-----~~~~lq~~e~~~e~~~~~~~il~~  284 (296)
T 1xqr_A          212 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE--PELGLEELLRH-----RCQLLQQHEEYQEELEFCEKLLQT  284 (296)
T ss_dssp             HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC--GGGCHHHHHHH-----HHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhc--cHHHHHHHHHH-----HHHHccchHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999875543211000  12346777774     478888776 89999999999999


Q ss_pred             hCCCCc
Q 009568          496 YWLEED  501 (532)
Q Consensus       496 ~~~~~~  501 (532)
                      ||++++
T Consensus       285 ~f~~~~  290 (296)
T 1xqr_A          285 CFSSPA  290 (296)
T ss_dssp             HCC---
T ss_pred             HcCCCC
Confidence            997643

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.95  E-value=5.9e-26  Score=211.81  Aligned_cols=241  Identities=32%  Similarity=0.466  Sum_probs=215.6

Q ss_pred             ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (532)
Q Consensus        74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  153 (532)
                      +.++.+++.|.++++.++..|++.|.+++... ......+++.|++|.|+++|.+++ ++++..|+++|.+++..+++.+
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~   79 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGP-ASAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDEAI   79 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCChHHH
Confidence            46899999999999999999999999999863 346777889999999999999988 9999999999999999879999


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCC
Q 009568          154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG  233 (532)
Q Consensus       154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~  233 (532)
                      ..+.+.|+++.|+.+|.++++.++..++++|++++...+..+..+.+.|+++.|+.++                      
T Consensus        80 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l----------------------  137 (252)
T 4hxt_A           80 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL----------------------  137 (252)
T ss_dssp             HHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT----------------------
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH----------------------
Confidence            9999999999999999999999999999999999987777777777666666666666                      


Q ss_pred             CCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHh
Q 009568          234 KPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI  313 (532)
Q Consensus       234 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl  313 (532)
                                          .++++.++..++++|++++...+.....+.+.|+++.|+.++.++++.++..|+++|+++
T Consensus       138 --------------------~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l  197 (252)
T 4hxt_A          138 --------------------TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI  197 (252)
T ss_dssp             --------------------TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             --------------------cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence                                335677788888888888877777777888999999999999999999999999999999


Q ss_pred             hcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC
Q 009568          314 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG  359 (532)
Q Consensus       314 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~  359 (532)
                      +.+++.....+.+.|+++.|+.++.++ ++.++..|+|+|+|++..
T Consensus       198 ~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~  242 (252)
T 4hxt_A          198 ASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALENIKSG  242 (252)
T ss_dssp             TTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHHHHcC
Confidence            998888888899999999999999998 999999999999999974

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.95  E-value=1.2e-26  Score=216.72  Aligned_cols=239  Identities=38%  Similarity=0.573  Sum_probs=217.0

Q ss_pred             ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (532)
Q Consensus        74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  153 (532)
                      ..++.++..|++++++++..|++.|+++++. ..+....+++.|++|.|+++|.+++ +.++..|+++|++++.++++.+
T Consensus        12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~   89 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQI   89 (252)
T ss_dssp             CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHH
Confidence            4679999999999999999999999998886 3566788899999999999999998 9999999999999999899999


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCC
Q 009568          154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG  233 (532)
Q Consensus       154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~  233 (532)
                      ..+++.|+++.|+.+|.++++.++..|+|+|+|++.+.+.....+.+.|+++.|+.++ .+.++.++..++|+|.+|+..
T Consensus        90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~  168 (252)
T 4db8_A           90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASG  168 (252)
T ss_dssp             HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999887765448888999999999999 677899999999999999987


Q ss_pred             CC-CCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHH
Q 009568          234 KP-QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN  312 (532)
Q Consensus       234 ~~-~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~n  312 (532)
                      .+ ........+++|.|+.++.++++.++..++++|++++...+.....+.+.|+++.|+.++.++++.++..|+++|+|
T Consensus       169 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~  248 (252)
T 4db8_A          169 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK  248 (252)
T ss_dssp             CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred             ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            52 22223347899999999999999999999999999998888888889999999999999999999999999999999


Q ss_pred             hhc
Q 009568          313 IVT  315 (532)
Q Consensus       313 l~~  315 (532)
                      |+.
T Consensus       249 l~~  251 (252)
T 4db8_A          249 LQS  251 (252)
T ss_dssp             TC-
T ss_pred             Hhc
Confidence            975

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.92  E-value=6e-24  Score=218.76  Aligned_cols=358  Identities=14%  Similarity=0.118  Sum_probs=280.5

Q ss_pred             cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (532)
Q Consensus        75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  154 (532)
                      .++-|.+.+++  ..++..|+..|.++.+.... ....+.  .+.+.++++|..++ .+-+..|++.|..++. .++.+.
T Consensus       297 ~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~-~~~si~--~La~~~~~~L~~~~-~~~~~~AvEgLaYLSl-~~~VKe  369 (778)
T 3opb_A          297 YLQLLERSLNV--EDVQIYSALVLVKTWSFTKL-TCINLK--QLSEIFINAISRRI-VPKVEMSVEALAYLSL-KASVKI  369 (778)
T ss_dssp             HHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTC-TTCCHH--HHHHHHHHHTTTCC-HHHHHHHHHHHHHHTT-SSHHHH
T ss_pred             HHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCC-CcCcHH--HHHHHHHHHHhcCC-ccHHHHHHHHHHHHhC-CHHHHH
Confidence            34556666654  47888999999999876422 111122  27788999998876 5669999999999998 677777


Q ss_pred             HHHhC-CChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCch--------------------------------------h
Q 009568          155 VVIDH-GAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPR--------------------------------------C  194 (532)
Q Consensus       155 ~i~~~-g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~--------------------------------------~  194 (532)
                      .+.+. |+++.|+.++++ .+..+.--++.+|.|++...+.                                      .
T Consensus       370 ~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~  449 (778)
T 3opb_A          370 MIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFN  449 (778)
T ss_dssp             HHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHH
Confidence            77765 669999999985 6778889999999999863321                                      3


Q ss_pred             HHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHH---HHHHHHHHHHHh
Q 009568          195 RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEE---VLTDACWALSYL  271 (532)
Q Consensus       195 ~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~---v~~~a~~~L~~l  271 (532)
                      +..+.+.|+++.|+.++ .+.++.++..++|+|.+|+.+..........|+++.|+.++.+....   .+..|+++|.++
T Consensus       450 ~~~l~eaGvIp~Lv~Ll-~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArL  528 (778)
T 3opb_A          450 EKYILRTELISFLKREM-HNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRM  528 (778)
T ss_dssp             HHHTTTTTHHHHHHHHG-GGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence            45677899999999999 77889999999999999998765555666689999999999877544   899999999999


Q ss_pred             ccCChhHHHHHHH----hCchHHHHHhhCC-CCcc---------c----hhhHHHHHHHhhcCCc----chhHHHhhc-C
Q 009568          272 SDGTNDKIQAVIE----AGVCPRLVELLGH-PSPS---------V----LIPALRTVGNIVTGDD----FQTQCIITY-G  328 (532)
Q Consensus       272 ~~~~~~~~~~~~~----~~~l~~L~~lL~~-~~~~---------v----~~~al~~L~nl~~~~~----~~~~~~~~~-~  328 (532)
                      +...+...  ++.    .+++++|+.+|.. +...         .    +..|+.+|.||+..++    ..+..++.. |
T Consensus       529 lis~np~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~g  606 (778)
T 3opb_A          529 LIFTNPGL--IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKV  606 (778)
T ss_dssp             HHTSCHHH--HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHH
T ss_pred             HhcCCHHH--HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcC
Confidence            85443221  121    3889999999983 2211         1    6789999999999873    335667875 9


Q ss_pred             chHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHH-HHHHHcC------CHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009568          329 ALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI-QAVIDAG------LVGPLVNLLQNAEFDIKKEAAWAISNATSG  401 (532)
Q Consensus       329 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~-~~l~~~~------~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~  401 (532)
                      +++.|..+|.+. +..+|+.|+|+++|++.. ++.+ +.+.+.+      -++.|+.++..++.++|+.|+|+|.|++..
T Consensus       607 a~~~L~~LL~s~-n~~VrrAA~elI~NL~~~-~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~  684 (778)
T 3opb_A          607 YWSTIENLMLDE-NVPLQRSTLELISNMMSH-PLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT  684 (778)
T ss_dssp             HHHHHHHGGGCS-SHHHHHHHHHHHHHHHTS-GGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC-CHHHHHHHHHHHHHHhCC-cHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Confidence            999999999988 899999999999999974 4443 2443222      378899999999999999999999999754


Q ss_pred             CCHHHHHHHHHc-CChHHHHhhcCC--CCHHHHHHHHHHHHHHHHhh
Q 009568          402 GTHEQIKYLVRE-GCIKPLCDLFVC--PDPRIVTVCLEGLENILKVG  445 (532)
Q Consensus       402 ~~~~~~~~l~~~-~~l~~L~~lL~~--~d~~v~~~al~~L~~l~~~~  445 (532)
                       .+..+..+++. ++++.++.++..  ++++++..++.++.|++...
T Consensus       685 -~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~  730 (778)
T 3opb_A          685 -IPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVI  730 (778)
T ss_dssp             -CHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTC
T ss_pred             -ChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhh
Confidence             45666777776 799999999998  89999999999999999754

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.92  E-value=5.4e-24  Score=219.08  Aligned_cols=321  Identities=11%  Similarity=0.110  Sum_probs=256.9

Q ss_pred             cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhh-hCCcHHHHHHhhcC-CCCHHHHHHHHHHHHHHhcCChh-
Q 009568           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVI-QSGVVPRFVEFLMR-EDYPQLQFEAAWALTNIASGTSE-  151 (532)
Q Consensus        75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i-~~g~i~~Lv~lL~~-~~~~~~~~~a~~~L~~l~~~~~~-  151 (532)
                      ..+.+++.|.+++.+.+..|+..|..+...  ......+. +.|+++.|+++++. .+ ..+.+.++.+|.|++...+. 
T Consensus       335 La~~~~~~L~~~~~~~~~~AvEgLaYLSl~--~~VKe~L~~d~~~L~~Lv~llk~~~d-~s~~Ygal~IL~NLt~~~~~~  411 (778)
T 3opb_A          335 LSEIFINAISRRIVPKVEMSVEALAYLSLK--ASVKIMIRSNESFTEILLTMIKSQKM-THCLYGLLVIMANLSTLPEEX  411 (778)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHHHHHHTTS--SHHHHHHHHCHHHHHHHHHHHTTTCC-TTHHHHHHHHHHHTTCCCCCC
T ss_pred             HHHHHHHHHhcCCccHHHHHHHHHHHHhCC--HHHHHHHHhCHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhcCCCccc
Confidence            467788888887777788999999998653  23333444 56779999999996 55 78999999999999873321 


Q ss_pred             -------------------------------------hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh
Q 009568          152 -------------------------------------NTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC  194 (532)
Q Consensus       152 -------------------------------------~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~  194 (532)
                                                           .+..+++.|++|.|+.++.++++.+++.++|+|.|++.+ +..
T Consensus       412 ~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~  490 (778)
T 3opb_A          412 XXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNF  490 (778)
T ss_dssp             CCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGG
T ss_pred             chhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHH
Confidence                                                 456778899999999999999999999999999999876 678


Q ss_pred             HHHHHhcCChHHHHHHhhhhhhh--HHHHHHHHHhhhccCCC-CCCCc--ccccchHHHHHHhhcC-CCH----------
Q 009568          195 RDLVLSQGALIPLLAQLNERAKL--SMLRNATWTLSNFCRGK-PQPPF--DQVRPALPALAQLVHS-NDE----------  258 (532)
Q Consensus       195 ~~~~~~~~~l~~L~~ll~~~~~~--~~~~~a~~~L~~L~~~~-~~~~~--~~~~~~l~~L~~lL~~-~d~----------  258 (532)
                      |..+.+.|++++|+.++......  ..+..|+++|.+++... |...+  ....+++|.|+.+|.. +..          
T Consensus       491 R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~  570 (778)
T 3opb_A          491 IPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQ  570 (778)
T ss_dssp             HHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCC
T ss_pred             HHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccccccc
Confidence            99999999999999999544333  37899999999998543 21111  1124899999999983 211          


Q ss_pred             ---HHHHHHHHHHHHhccCCh----hHHHHHHHh-CchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcC--
Q 009568          259 ---EVLTDACWALSYLSDGTN----DKIQAVIEA-GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYG--  328 (532)
Q Consensus       259 ---~v~~~a~~~L~~l~~~~~----~~~~~~~~~-~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~--  328 (532)
                         --+..|+.+|.||+..++    +....++.. |+++.|..+|.+++..++..|+++++||+...+...+.+.+.+  
T Consensus       571 ~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~  650 (778)
T 3opb_A          571 IKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENP  650 (778)
T ss_dssp             CCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSH
T ss_pred             ccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCc
Confidence               127789999999998762    334667774 8999999999999999999999999999985543222343322  


Q ss_pred             ----chHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHc-CCHHHHHHHHhc--CchhHHHHHHHHHHHhhc
Q 009568          329 ----ALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDA-GLVGPLVNLLQN--AEFDIKKEAAWAISNATS  400 (532)
Q Consensus       329 ----~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~-~~i~~L~~ll~~--~~~~v~~~a~~aL~nl~~  400 (532)
                          .++.|+.++.+. +..+|+.|+|+|+|++.+++...+.+++. ++++.++.++..  ++++++..++.++.|++.
T Consensus       651 ~~~~rL~lLV~Ll~s~-D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          651 QSLRNFNILVKLLQLS-DVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             HHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred             hhhccHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence                378899999888 99999999999999988778878888876 799999999999  799999999999999996

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.92  E-value=3.8e-23  Score=187.13  Aligned_cols=198  Identities=40%  Similarity=0.593  Sum_probs=185.5

Q ss_pred             cchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhH
Q 009568          243 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQ  322 (532)
Q Consensus       243 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~  322 (532)
                      .+..+.|..++.++++.++..++|+|.+++...++....+.+.|+++.|+.+|.++++.++..|+++|+|++.+++....
T Consensus        11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (210)
T 4db6_A           11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (210)
T ss_dssp             --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence            56788999999999999999999999999988888888999999999999999999999999999999999998888888


Q ss_pred             HHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCC
Q 009568          323 CIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGG  402 (532)
Q Consensus       323 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~  402 (532)
                      .+++.|+++.|+.+|.++ ++.++..|+|+|+|++.++++....+++.|+++.|+.++.++++.++..|+++|.|++.. 
T Consensus        91 ~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~-  168 (210)
T 4db6_A           91 AVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-  168 (210)
T ss_dssp             HHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-
T ss_pred             HHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-
Confidence            899999999999999999 999999999999999998899888999999999999999999999999999999999986 


Q ss_pred             CHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 009568          403 THEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENIL  442 (532)
Q Consensus       403 ~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~  442 (532)
                      +++....+.+.|+++.|+.++.++++.++..++++|.++.
T Consensus       169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~  208 (210)
T 4db6_A          169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ  208 (210)
T ss_dssp             CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred             CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence            4677788889999999999999999999999999999874

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.90  E-value=2.2e-22  Score=182.10  Aligned_cols=200  Identities=38%  Similarity=0.583  Sum_probs=174.9

Q ss_pred             hCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh
Q 009568          115 QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC  194 (532)
Q Consensus       115 ~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~  194 (532)
                      ..+..|.|+.+|.+++ ++++..|+|+|.+++.++++.+..+++.|+++.|+.+|.++++.++..|+|+|+|++.+.+..
T Consensus        10 ~~~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~   88 (210)
T 4db6_A           10 HGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ   88 (210)
T ss_dssp             ---CHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             ccchhHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence            4578999999999988 999999999999999889999999999999999999999999999999999999999888877


Q ss_pred             HHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 009568          195 RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG  274 (532)
Q Consensus       195 ~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~  274 (532)
                      +..+.+.|+++.|+.+| .                                         ++++.++..++|+|++++..
T Consensus        89 ~~~i~~~g~i~~L~~lL-~-----------------------------------------~~~~~v~~~a~~~L~~l~~~  126 (210)
T 4db6_A           89 IQAVIDAGALPALVQLL-S-----------------------------------------SPNEQILQEALWALSNIASG  126 (210)
T ss_dssp             HHHHHHTTCHHHHHHHT-T-----------------------------------------CSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHCCCHHHHHHHH-c-----------------------------------------CCcHHHHHHHHHHHHHHHcC
Confidence            88777777777777776 3                                         34555666666666666666


Q ss_pred             ChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHH
Q 009568          275 TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTIS  354 (532)
Q Consensus       275 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~  354 (532)
                      .+.....+++.|+++.|+.+|.++++.++..|+++|+|++..++.....+.+.|+++.|+.++.++ ++.+++.|+|+|.
T Consensus       127 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~  205 (210)
T 4db6_A          127 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALE  205 (210)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence            666667788899999999999999999999999999999998888888899999999999999988 9999999999999


Q ss_pred             HHhc
Q 009568          355 NITA  358 (532)
Q Consensus       355 nl~~  358 (532)
                      +++.
T Consensus       206 ~l~~  209 (210)
T 4db6_A          206 KLQS  209 (210)
T ss_dssp             HHCC
T ss_pred             HHhc
Confidence            9974

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.90  E-value=2.5e-22  Score=188.96  Aligned_cols=226  Identities=16%  Similarity=0.133  Sum_probs=185.2

Q ss_pred             HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHH
Q 009568          132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK-LLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQ  210 (532)
Q Consensus       132 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~l  210 (532)
                      .+-+..|+..|.+++. +.++...+++.|+++.|+. +|.++++.+++.|+|+|++++.+++.+++.+++.|++++|+.+
T Consensus        54 ~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           54 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            4678899999999998 6678888999999999999 9999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhHHHHHHHHHhhhccCCCCC-CCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchH
Q 009568          211 LNERAKLSMLRNATWTLSNFCRGKPQ-PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCP  289 (532)
Q Consensus       211 l~~~~~~~~~~~a~~~L~~L~~~~~~-~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~  289 (532)
                      |..+.+..+++.++|+|++++++.+. .......+++|.|+.+|.+++..++..++|+|++++.+.++.+..+++.|+++
T Consensus       133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~  212 (296)
T 1xqr_A          133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ  212 (296)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence            95455789999999999999998632 23334468999999999999999999999999999988888889999999999


Q ss_pred             HHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhh--cCchHHH---HHHhcCCC-chhHHHHHHHHHHHHhc
Q 009568          290 RLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIIT--YGALPYL---LGLLTHSH-KKSIKKEACWTISNITA  358 (532)
Q Consensus       290 ~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~--~~~l~~L---~~lL~~~~-~~~v~~~a~~~L~nl~~  358 (532)
                      .|+.+|.+++..++..|+++|++|+.+.+......-.  ..+...|   ..-++..+ ..++.+.|..++-++..
T Consensus       213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~  287 (296)
T 1xqr_A          213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFS  287 (296)
T ss_dssp             HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999875433222111  1111212   23333221 34566666666666654

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.85  E-value=7.6e-21  Score=170.90  Aligned_cols=197  Identities=19%  Similarity=0.140  Sum_probs=170.6

Q ss_pred             cHHHHHHhhcCCCCH--HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH
Q 009568          118 VVPRFVEFLMREDYP--QLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR  195 (532)
Q Consensus       118 ~i~~Lv~lL~~~~~~--~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~  195 (532)
                      .+|.++++|.+++ +  +++..|+++|.+++.++++.+..+++.|+||.|+++|.++++.+++.|+|+|.||+.+++..+
T Consensus         9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            5899999999988 6  899999999999998889999999999999999999999999999999999999999888899


Q ss_pred             HHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhc----------------CCCHH
Q 009568          196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH----------------SNDEE  259 (532)
Q Consensus       196 ~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~----------------~~d~~  259 (532)
                      ..+.+.|++++|+.+|..+.+.++++.++.+|++|+...... .....+++|.|+.++.                ..++.
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k-~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~  166 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK-NLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD  166 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGH-HHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred             HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhH-HHHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence            999999999999999954568899999999999999765332 2334567888887652                13679


Q ss_pred             HHHHHHHHHHHhccCChhHHHHHHHh-CchHHHHHhhCC------CCccchhhHHHHHHHhhcC
Q 009568          260 VLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLGH------PSPSVLIPALRTVGNIVTG  316 (532)
Q Consensus       260 v~~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~v~~~al~~L~nl~~~  316 (532)
                      ++.++.++|.|++..+++..+.+.+. |+++.|+.+++.      .+...++.|+.+|.||+..
T Consensus       167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            99999999999998776777777765 678999999864      3567889999999999864

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.83  E-value=3.2e-20  Score=166.89  Aligned_cols=197  Identities=18%  Similarity=0.193  Sum_probs=165.2

Q ss_pred             ccHHHHHhhhcCCCh--HHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009568           74 ESLPAMVAGVWSDDS--SLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE  151 (532)
Q Consensus        74 ~~l~~lv~~L~s~~~--~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~  151 (532)
                      ..+|.+++.|+++++  +++..|+..++++.... .+....+++.|+||.|+++|.+++ +++|..|+|+|.||+.++++
T Consensus         8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~   85 (233)
T 3tt9_A            8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDND   85 (233)
T ss_dssp             CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHH
T ss_pred             ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHH
Confidence            378999999999998  88999999999988753 456777889999999999999988 99999999999999998899


Q ss_pred             hHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhh---------------hh
Q 009568          152 NTKVVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE---------------RA  215 (532)
Q Consensus       152 ~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~---------------~~  215 (532)
                      ++..+.+.|+||.|+++|. +++..++++++.+|+|++... ..+..+.+. ++++|+.++..               ..
T Consensus        86 nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~-~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~  163 (233)
T 3tt9_A           86 NKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND-KLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLL  163 (233)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG-GGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTC
T ss_pred             HHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh-hhHHHHHhc-cHHHHHHHHhccccCCcccccccccccc
Confidence            9999999999999999997 578999999999999998754 456666664 68999886631               12


Q ss_pred             hhHHHHHHHHHhhhccCCC-CCCCccc-ccchHHHHHHhhcC------CCHHHHHHHHHHHHHhccC
Q 009568          216 KLSMLRNATWTLSNFCRGK-PQPPFDQ-VRPALPALAQLVHS------NDEEVLTDACWALSYLSDG  274 (532)
Q Consensus       216 ~~~~~~~a~~~L~~L~~~~-~~~~~~~-~~~~l~~L~~lL~~------~d~~v~~~a~~~L~~l~~~  274 (532)
                      ++.++.+++++|.||+... ....... ..|+++.|+.+++.      .+...+++++.+|.||+..
T Consensus       164 ~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          164 DFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            5689999999999999865 3333332 35789999999874      2668899999999999854

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.79  E-value=6.2e-18  Score=177.55  Aligned_cols=342  Identities=11%  Similarity=0.132  Sum_probs=249.2

Q ss_pred             CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hhH
Q 009568          117 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP-RCR  195 (532)
Q Consensus       117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~~  195 (532)
                      .++|.+..++.+++ ..+|..|+.+|+.++.....   ......+++.++.++.++++.+|..++++|+.++...+ ..+
T Consensus       242 ~~~~~l~~~~~d~~-~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~  317 (588)
T 1b3u_A          242 LVMPTLRQAAEDKS-WRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCR  317 (588)
T ss_dssp             HTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTH
T ss_pred             HHHHHHHHHccCCC-HHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhh
Confidence            36677777777666 67888888888887752111   11223567888889988889999999999999875432 111


Q ss_pred             HHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCC
Q 009568          196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT  275 (532)
Q Consensus       196 ~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~  275 (532)
                      .......+++.+..++ .+.+..++..++++|..++..-..  ......++|.+..++.+++++++..++.++..+....
T Consensus       318 ~~~~~~~l~p~l~~~l-~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~  394 (588)
T 1b3u_A          318 ENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPILGK--DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI  394 (588)
T ss_dssp             HHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHHHCH--HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHS
T ss_pred             hhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhhH--hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhc
Confidence            1122234567777777 677889999999999999854211  1123457888999999989999999999998887532


Q ss_pred             hhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHH
Q 009568          276 NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN  355 (532)
Q Consensus       276 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n  355 (532)
                      ...   .....++|.+..++.+.++.++..++.+++.++......   .....+++.+...|.++ +..+|..|+.+++.
T Consensus       395 ~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~  467 (588)
T 1b3u_A          395 GIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNSLCMAWLVDH-VYAIREAATSNLKK  467 (588)
T ss_dssp             CHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG---GCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHH
T ss_pred             CHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHH
Confidence            211   122367888999999999999999999999998532211   12234678899999888 89999999999999


Q ss_pred             HhcC-CHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHH
Q 009568          356 ITAG-NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVC  434 (532)
Q Consensus       356 l~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~a  434 (532)
                      ++.. .++    .....++|.|..++.+.++.+|..++++++.++.....+    .....+++.|..+++++++.++..+
T Consensus       468 l~~~~~~~----~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~~l~d~~~~Vr~~a  539 (588)
T 1b3u_A          468 LVEKFGKE----WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD----ITTKHMLPTVLRMAGDPVANVRFNV  539 (588)
T ss_dssp             HHHHHCHH----HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH----HHHHHTHHHHHHGGGCSCHHHHHHH
T ss_pred             HHHHhCch----hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHHhhCCCCCchHHHHH
Confidence            9862 122    112347888988888889999999999999997642222    1223589999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009568          435 LEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETY  496 (532)
Q Consensus       435 l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~  496 (532)
                      +++|..+.......            +.    ....+..|..+..+++++|+..|...+..+
T Consensus       540 ~~~l~~l~~~~~~~------------~~----~~~~~p~l~~l~~d~d~~vr~~a~~al~~l  585 (588)
T 1b3u_A          540 AKSLQKIGPILDNS------------TL----QSEVKPILEKLTQDQDVDVKYFAQEALTVL  585 (588)
T ss_dssp             HHHHHHHGGGSCHH------------HH----HHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhchh------------hh----HHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence            99999998643211            11    133457788889999999999999999876

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.78  E-value=3e-18  Score=187.83  Aligned_cols=354  Identities=14%  Similarity=0.150  Sum_probs=260.1

Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 009568           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV  155 (532)
Q Consensus        76 l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  155 (532)
                      -+.+++.|.++++.++..++.++..++..+  .+.   ...+++|.|++.+.+++ +.++..|+.+|+.++...+.....
T Consensus        92 k~~ll~~l~~~~~~vr~~~a~~i~~ia~~~--~~~---~wp~ll~~L~~~l~~~~-~~~r~~al~~L~~i~~~~~~~~~~  165 (852)
T 4fdd_A           92 KSECLNNIGDSSPLIRATVGILITTIASKG--ELQ---NWPDLLPKLCSLLDSED-YNTCEGAFGALQKICEDSAEILDS  165 (852)
T ss_dssp             HHHHHTTTTCSSHHHHHHHHHHHHHHHHHT--TTT---TCTTHHHHHHHHHSCSS-HHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHhc--Ccc---ccHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhHHHhch
Confidence            356777888888999999999999998863  111   23568999999999988 899999999999998743332111


Q ss_pred             HH----hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhcc
Q 009568          156 VI----DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFC  231 (532)
Q Consensus       156 i~----~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~  231 (532)
                      -.    -..+++.|++++.++++.+|..|+++|++++...+..-.. .-..+++.++..+ .+.++.++..++++|..++
T Consensus       166 ~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~-~~~~~l~~l~~~~-~d~~~~vr~~a~~~L~~l~  243 (852)
T 4fdd_A          166 DVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALML-HIDSFIENLFALA-GDEEPEVRKNVCRALVMLL  243 (852)
T ss_dssp             CSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHT-SHHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHH
T ss_pred             hhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHH-HHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHH
Confidence            00    1235677888888899999999999999887654321100 0113466677766 6678899999999999999


Q ss_pred             CCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHH---hCchHHHHHhh-----------CC
Q 009568          232 RGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIE---AGVCPRLVELL-----------GH  297 (532)
Q Consensus       232 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~---~~~l~~L~~lL-----------~~  297 (532)
                      ...+..-......+++.+..++.+.++.++..+++++..++.....  ...+.   ..+++.++..+           .+
T Consensus       244 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~--~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d  321 (852)
T 4fdd_A          244 EVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC--KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGD  321 (852)
T ss_dssp             HHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTH--HHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-
T ss_pred             HhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhH--HHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCC
Confidence            8653322233457888888999999999999999999999865321  11221   14566666666           33


Q ss_pred             -----------CCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 009568          298 -----------PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQA  366 (532)
Q Consensus       298 -----------~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~  366 (532)
                                 .++.++..|..+|+.++...+..   ++. .+++.+...+.++ ++.+|..|+++|++++.+..+.+..
T Consensus       322 ~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~~-~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~  396 (852)
T 4fdd_A          322 VEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LLP-HILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIP  396 (852)
T ss_dssp             -----------CCCCHHHHHHHHHHHHHHHHGGG---GHH-HHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGG
T ss_pred             cccccccccccccchHHHHHHHHHHHHHHhccHH---HHH-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHH
Confidence                       34567899999999998654321   222 4678888888888 9999999999999999987765554


Q ss_pred             HHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHH-HHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 009568          367 VIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHE-QIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG  445 (532)
Q Consensus       367 l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~-~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~  445 (532)
                      .+ .++++.++..+.+.++.||..|+|++++++...... ...+  -.++++.|+..+.++++.++..++++|.+++...
T Consensus       397 ~l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~--~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~  473 (852)
T 4fdd_A          397 YL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY--LKPLMTELLKRILDSNKRVQEAACSAFATLEEEA  473 (852)
T ss_dssp             GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTT--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHH--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence            43 347899999999999999999999999998632110 0011  1246788888998899999999999999998765


Q ss_pred             hh
Q 009568          446 EA  447 (532)
Q Consensus       446 ~~  447 (532)
                      ..
T Consensus       474 ~~  475 (852)
T 4fdd_A          474 CT  475 (852)
T ss_dssp             GG
T ss_pred             hH
Confidence            43

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.77  E-value=1.5e-17  Score=174.00  Aligned_cols=333  Identities=17%  Similarity=0.177  Sum_probs=233.5

Q ss_pred             cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (532)
Q Consensus        75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  154 (532)
                      .++.+.+.|+++++.++..|+..+.++..    +.    +...++|.+.+++.+++ +.+|..|+++++++...+++...
T Consensus        87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~~----~~----~~~~l~~~l~~~L~d~~-~~VRk~A~~al~~i~~~~p~~~~  157 (591)
T 2vgl_B           87 AVNSFVKDCEDPNPLIRALAVRTMGCIRV----DK----ITEYLCEPLRKCLKDED-PYVRKTAAVCVAKLHDINAQMVE  157 (591)
T ss_dssp             THHHHGGGSSSSSHHHHHHHHHHHHTCCS----GG----GHHHHHHHHHHHSSCSC-HHHHHHHHHHHHHHHHSSCCCHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHcCCh----HH----HHHHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHhhChhhcc
Confidence            34556666777777777777777766542    11    11235778999999887 99999999999999986665432


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC
Q 009568          155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  234 (532)
Q Consensus       155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~  234 (532)
                         +.++++.|..+|.++++.++..|+++|+.++.+.+..+......+.+..|+..+ ...++-.+..++.++..++...
T Consensus       158 ---~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l-~~~~~~~q~~il~~l~~l~~~~  233 (591)
T 2vgl_B          158 ---DQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL-NECTEWGQIFILDCLSNYNPKD  233 (591)
T ss_dssp             ---HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHTSCCCS
T ss_pred             ---cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcC-CCCCchHHHHHHHHHHHhCCCC
Confidence               246789999999999999999999999999987663210111112355666666 4556777777888887777432


Q ss_pred             CCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccC---ChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHH
Q 009568          235 PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVG  311 (532)
Q Consensus       235 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~  311 (532)
                          ......+++.+..++++.++.|+..|++++.++...   +++....+. ..+.+.|+.++. +++.++..|+.+|+
T Consensus       234 ----~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~  307 (591)
T 2vgl_B          234 ----DREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNIN  307 (591)
T ss_dssp             ----HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHH
T ss_pred             ----hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHH
Confidence                223457888888899999999999999999998742   233334333 356677776654 78899999999999


Q ss_pred             HhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHH
Q 009568          312 NIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEA  391 (532)
Q Consensus       312 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a  391 (532)
                      .++...+.....     .+..+. .+.+. +..+|..|++++.+++...  .+..     +++.|..++.+.+.++|..+
T Consensus       308 ~i~~~~p~~~~~-----~~~~~~-~~~~d-~~~Ir~~al~~L~~l~~~~--nv~~-----iv~~L~~~l~~~d~~~r~~~  373 (591)
T 2vgl_B          308 LIVQKRPEILKQ-----EIKVFF-VKYND-PIYVKLEKLDIMIRLASQA--NIAQ-----VLAELKEYATEVDVDFVRKA  373 (591)
T ss_dssp             HHHHHCCSTTTT-----CTTTTS-CCTTS-CHHHHHHHHHHHHHTCCSS--THHH-----HHHHHHHHTTSSCHHHHHHH
T ss_pred             HHHHhChHHHHH-----HHHhhe-eccCC-hHHHHHHHHHHHHHHCChh--hHHH-----HHHHHHHHHhcCCHHHHHHH
Confidence            998765532211     111121 12234 5788999999999887532  2222     45667778877888899999


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 009568          392 AWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGE  446 (532)
Q Consensus       392 ~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~  446 (532)
                      +++|++++.... ....     .+++.|++++...+..++..++.++..+++..+
T Consensus       374 v~aI~~la~~~~-~~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p  422 (591)
T 2vgl_B          374 VRAIGRCAIKVE-QSAE-----RCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYP  422 (591)
T ss_dssp             HHHHHHHHTTCH-HHHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHhCh-hHHH-----HHHHHHHHHHcccchHHHHHHHHHHHHHHHHCc
Confidence            999999887643 2222     257888888888888888888888888876543

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.77  E-value=2.1e-17  Score=181.12  Aligned_cols=393  Identities=14%  Similarity=0.126  Sum_probs=278.2

Q ss_pred             HHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 009568           77 PAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVV  156 (532)
Q Consensus        77 ~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i  156 (532)
                      ..++..+.+.++.+|..|+..|++.+... ...+..-....+-+.+++.|.+++ +.+|..++.+++.++......    
T Consensus        51 ~~il~~~~~~~~~vR~~a~~~Lkn~i~~~-w~~~~~~~~~~ik~~ll~~l~~~~-~~vr~~~a~~i~~ia~~~~~~----  124 (852)
T 4fdd_A           51 IFVLTKLKSEDEPTRSLSGLILKNNVKAH-FQNFPNGVTDFIKSECLNNIGDSS-PLIRATVGILITTIASKGELQ----  124 (852)
T ss_dssp             HHHHHTCTTSCHHHHHHHHHHHHHHTTTS-GGGCCHHHHHHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHHHTTTT----
T ss_pred             HHHHhccCCCChHHHHHHHHHHHHHHHHc-cCCCCHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhcCcc----
Confidence            44444446778999999999999998642 222222233446677788888777 899999999999998733110    


Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHH----hcCChHHHHHHhhhhhhhHHHHHHHHHhhhccC
Q 009568          157 IDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVL----SQGALIPLLAQLNERAKLSMLRNATWTLSNFCR  232 (532)
Q Consensus       157 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~----~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~  232 (532)
                      .-.+.++.|+..+.++++.+++.++.+|+.++.+.+.....-.    -..+++.++..+ .+.++.++..+++++..+..
T Consensus       125 ~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l-~~~~~~vR~~A~~aL~~~~~  203 (852)
T 4fdd_A          125 NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFF-KHSSPKIRSHAVACVNQFII  203 (852)
T ss_dssp             TCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTT-TCSSHHHHHHHHHHHHTTTT
T ss_pred             ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHh
Confidence            0135689999999999999999999999999865433211000    012455556656 56788999999999998886


Q ss_pred             CCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHH
Q 009568          233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN  312 (532)
Q Consensus       233 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~n  312 (532)
                      ..+.........+++.+..++.++++.++..++++|..++...++.....+. ++++.+...+.+.++.++..|+.++..
T Consensus       204 ~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~~  282 (852)
T 4fdd_A          204 SRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENVALEACEFWLT  282 (852)
T ss_dssp             TTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCCcHHHHHHHHHHHHH
Confidence            5432222234578888889999999999999999999999776655443333 578888888999999999999999999


Q ss_pred             hhcCCcchhHHHhh---cCchHHHHHHh-----------cC--C--------CchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 009568          313 IVTGDDFQTQCIIT---YGALPYLLGLL-----------TH--S--------HKKSIKKEACWTISNITAGNRDQIQAVI  368 (532)
Q Consensus       313 l~~~~~~~~~~~~~---~~~l~~L~~lL-----------~~--~--------~~~~v~~~a~~~L~nl~~~~~~~~~~l~  368 (532)
                      ++.... .. ..+.   ..++|.++..+           .+  .        .+..+|+.|+.+|+.++...++   .++
T Consensus       283 l~~~~~-~~-~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~  357 (852)
T 4fdd_A          283 LAEQPI-CK-DVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELL  357 (852)
T ss_dssp             HTTSTT-HH-HHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GGH
T ss_pred             Hhcchh-HH-HHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---HHH
Confidence            986432 11 1222   14566666666           22  0        1346799999999999863222   122


Q ss_pred             HcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhh
Q 009568          369 DAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAE  448 (532)
Q Consensus       369 ~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~  448 (532)
                      . .+++.+...+.+.++.+|..|+++|++++.+.......+  -.++++.++.+++++++.|+..+++++.++.......
T Consensus       358 ~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~--l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~  434 (852)
T 4fdd_A          358 P-HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPY--LPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQ  434 (852)
T ss_dssp             H-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGG--HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHS
T ss_pred             H-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHH--HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccc
Confidence            2 257788888888899999999999999998754322222  2357899999999999999999999999988754331


Q ss_pred             hhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009568          449 KNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL  498 (532)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~  498 (532)
                      .        ...|..     +.++.+.....++++.|+..|.+.+..+..
T Consensus       435 ~--------~~~~~~-----~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~  471 (852)
T 4fdd_A          435 P--------PDTYLK-----PLMTELLKRILDSNKRVQEAACSAFATLEE  471 (852)
T ss_dssp             C--------TTTTHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             h--------HHHHHH-----HHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            1        111222     234556666667899999999999988764

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.77  E-value=2.1e-17  Score=173.44  Aligned_cols=381  Identities=12%  Similarity=0.099  Sum_probs=284.5

Q ss_pred             cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (532)
Q Consensus        75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  154 (532)
                      .++.+...+.++++.++..|+..|..++..-  +.  ......++|.|..++++++ +.+|..|+.+|..++...+..  
T Consensus       165 l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~--~~--~~~~~~l~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~~--  237 (588)
T 1b3u_A          165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVL--EL--DNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE--  237 (588)
T ss_dssp             HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTS--CH--HHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH--
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--cH--HhHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCHH--
Confidence            3566667778888999999999999988642  11  1223468899999998887 899999999999988633221  


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC
Q 009568          155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  234 (532)
Q Consensus       155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~  234 (532)
                       .....++|.+..++.++++.+|..++.+|+.++.....   ......+++.++.++ .+.++.++..++++|..++...
T Consensus       238 -~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~  312 (588)
T 1b3u_A          238 -DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENL  312 (588)
T ss_dssp             -HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTS
T ss_pred             -HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHh
Confidence             12234678888899889999999999999999743211   112334678888888 6778899999999999998764


Q ss_pred             CCCCc--ccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHH
Q 009568          235 PQPPF--DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN  312 (532)
Q Consensus       235 ~~~~~--~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~n  312 (532)
                      +....  .....++|.+..++.++++.++..++++++.++......   .....+++.+..++.++++.++..++.+++.
T Consensus       313 ~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~  389 (588)
T 1b3u_A          313 SADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD---NTIEHLLPLFLAQLKDECPEVRLNIISNLDC  389 (588)
T ss_dssp             CTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH---HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHH
T ss_pred             ChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh---HHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            32211  345678899999999999999999999999987432211   1223578889999999999999999999998


Q ss_pred             hhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHhcCchhHHHHH
Q 009568          313 IVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG-NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEA  391 (532)
Q Consensus       313 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a  391 (532)
                      ++......   .....++|.+..++.+. ++.+|..++.+++.++.. ..+    .....++|.+..++.+++..+|..|
T Consensus       390 l~~~~~~~---~~~~~~lp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~Vr~~a  461 (588)
T 1b3u_A          390 VNEVIGIR---QLSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVE----FFDEKLNSLCMAWLVDHVYAIREAA  461 (588)
T ss_dssp             HHHHSCHH---HHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGG----GCCHHHHHHHHHGGGCSSHHHHHHH
T ss_pred             HHHhcCHH---HHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHcCHH----HHHHHHHHHHHHHhcCCcHHHHHHH
Confidence            88643311   12235788899999887 899999999999998751 111    1112357888888998899999999


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccH
Q 009568          392 AWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGL  471 (532)
Q Consensus       392 ~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  471 (532)
                      +.+++.++....++.    ....+++.|..++.++++.++..+++++..+.......           .|.     ...+
T Consensus       462 ~~~l~~l~~~~~~~~----~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~-----------~~~-----~~~~  521 (588)
T 1b3u_A          462 TSNLKKLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD-----------ITT-----KHML  521 (588)
T ss_dssp             HHHHHHHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH-----------HHH-----HHTH
T ss_pred             HHHHHHHHHHhCchh----HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH-----------HHH-----HHHH
Confidence            999999987433332    12357888989899999999999999999987653221           122     2346


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009568          472 EKIENLQSHDNNEIYEKAVKILETYWL  498 (532)
Q Consensus       472 ~~l~~L~~~~~~~v~~~a~~il~~~~~  498 (532)
                      +.+..+..+++++|+..+.+.+..++.
T Consensus       522 ~~l~~~l~d~~~~Vr~~a~~~l~~l~~  548 (588)
T 1b3u_A          522 PTVLRMAGDPVANVRFNVAKSLQKIGP  548 (588)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred             HHHHhhCCCCCchHHHHHHHHHHHHHH
Confidence            778888889999999999999988775

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.75  E-value=4.1e-15  Score=149.43  Aligned_cols=414  Identities=14%  Similarity=0.156  Sum_probs=291.0

Q ss_pred             ccHHHHHhhhcC--CChHHHHHHHHHHHHHhcCCCCCc----------------hhHhh-hCCcHHHHHHhhcCCCCHHH
Q 009568           74 ESLPAMVAGVWS--DDSSLQLEATTQFRKLLSIERSPP----------------IEEVI-QSGVVPRFVEFLMREDYPQL  134 (532)
Q Consensus        74 ~~l~~lv~~L~s--~~~~~~~~a~~~l~~l~~~~~~~~----------------~~~~i-~~g~i~~Lv~lL~~~~~~~~  134 (532)
                      .+++.++..|+.  .|.++...++..|..+++....+.                .+.++ +.+.++.|+.+|+..+ ..+
T Consensus        60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~d-f~v  138 (651)
T 3grl_A           60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD-FHV  138 (651)
T ss_dssp             HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCC-HHH
T ss_pred             hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCcc-HHH
Confidence            478999999986  477888889999988887542211                12333 5688999999999988 899


Q ss_pred             HHHHHHHHHHHhcCChh-hHHHHHhC-CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhh
Q 009568          135 QFEAAWALTNIASGTSE-NTKVVIDH-GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN  212 (532)
Q Consensus       135 ~~~a~~~L~~l~~~~~~-~~~~i~~~-g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~  212 (532)
                      |..++.+|..++...++ ..+.+... ++++.|+.+|++..+.+|..++..|.+++.+++..++.+.-.|+++.|+.++.
T Consensus       139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~  218 (651)
T 3grl_A          139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT  218 (651)
T ss_dssp             HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence            99999999999987777 67777754 99999999999999999999999999999999999999999999999999995


Q ss_pred             hhh---hhHHHHHHHHHhhhccCCCC-CCCcccccchHHHHHHhhcCCCH------HHHHH---HHHHHHHhccCC----
Q 009568          213 ERA---KLSMLRNATWTLSNFCRGKP-QPPFDQVRPALPALAQLVHSNDE------EVLTD---ACWALSYLSDGT----  275 (532)
Q Consensus       213 ~~~---~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~l~~L~~lL~~~d~------~v~~~---a~~~L~~l~~~~----  275 (532)
                      ...   ...+...|+.++.+|.+.++ +.......+++|.|.+++..+++      ....+   ++.++.-++...    
T Consensus       219 ~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~  298 (651)
T 3grl_A          219 EEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPG  298 (651)
T ss_dssp             HHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHH
T ss_pred             hcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            332   23688899999999999973 44444457888999998875432      23333   555555555442    


Q ss_pred             --hhHHHHHHHhCchHHHHHhhCCC--CccchhhHHHHHHHhhcCCcchhHHHhhcC---------chHHHHHHhcCCCc
Q 009568          276 --NDKIQAVIEAGVCPRLVELLGHP--SPSVLIPALRTVGNIVTGDDFQTQCIITYG---------ALPYLLGLLTHSHK  342 (532)
Q Consensus       276 --~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~al~~L~nl~~~~~~~~~~~~~~~---------~l~~L~~lL~~~~~  342 (532)
                        ..+...+.+.|+++.|+.++..+  ...++..|+.+++.++.+++.....+....         ++..|+.++.+...
T Consensus       299 ~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~  378 (651)
T 3grl_A          299 ATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQP  378 (651)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSC
T ss_pred             CCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhccccc
Confidence              23456688999999999998765  457889999999999999987666554322         33334444655546


Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHc----------CCH---HHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHH
Q 009568          343 KSIKKEACWTISNITAGNRDQIQAVIDA----------GLV---GPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKY  409 (532)
Q Consensus       343 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~----------~~i---~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~  409 (532)
                      ..+|..|+.++..+..++++....++..          +.+   ..|+..+-+.|+--..-|+.++.++... +++....
T Consensus       379 ~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~-n~~~K~~  457 (651)
T 3grl_A          379 FVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQE-NATQKEQ  457 (651)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTT-CHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcC-CHHHHHH
Confidence            7899999999999999887655555432          111   1344555556665556688888888876 4444443


Q ss_pred             HHH--------c---CChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHH
Q 009568          410 LVR--------E---GCIKPLCDLFV-CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENL  477 (532)
Q Consensus       410 l~~--------~---~~l~~L~~lL~-~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L  477 (532)
                      +..        .   -.++.+..+|. ..++.+....|-.|...+..+..            .....+.+...+..|-..
T Consensus       458 ~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p~------------AV~dFL~~~s~l~~L~~~  525 (651)
T 3grl_A          458 LLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCPI------------AVTHFLHNSANVPFLTGQ  525 (651)
T ss_dssp             HTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCHH------------HHHHHHHSTTHHHHHHHH
T ss_pred             HHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCChH------------HHHHHHcCCchHHHHHHH
Confidence            333        1   12445556554 35666666666666655544332            234555555556666654


Q ss_pred             h-cC-C--CHHHHHHHHHHHHHhCCCCc
Q 009568          478 Q-SH-D--NNEIYEKAVKILETYWLEED  501 (532)
Q Consensus       478 ~-~~-~--~~~v~~~a~~il~~~~~~~~  501 (532)
                      . ++ .  +.-|+-.|.-++--.|...+
T Consensus       526 i~~~~~~~~~lvqGL~a~LLGi~yef~~  553 (651)
T 3grl_A          526 IAENLGEEEQLVQGLCALLLGISIYFND  553 (651)
T ss_dssp             HHSCCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHhccCcchHHHHHHHHHHHHHHhhccC
Confidence            3 22 2  23477788777777655443

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.72  E-value=1.9e-15  Score=157.89  Aligned_cols=332  Identities=16%  Similarity=0.140  Sum_probs=247.4

Q ss_pred             ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (532)
Q Consensus        74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  153 (532)
                      ..++.+++.+++++..++..+...+..++..  .+..  .  .-+++.+.+-|++++ +.+|..|+.+|+++..  ++..
T Consensus        49 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--~~e~--~--~l~~n~l~kdL~~~n-~~ir~~AL~~L~~i~~--~~~~  119 (591)
T 2vgl_B           49 SLFPDVVNCMQTDNLELKKLVYLYLMNYAKS--QPDM--A--IMAVNSFVKDCEDPN-PLIRALAVRTMGCIRV--DKIT  119 (591)
T ss_dssp             GGHHHHHHTTSSSCHHHHHHHHHHHHHHHHH--SHHH--H--HTTHHHHGGGSSSSS-HHHHHHHHHHHHTCCS--GGGH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHccc--CchH--H--HHHHHHHHHHcCCCC-HHHHHHHHHHHHcCCh--HHHH
Confidence            3578899999999999998888888887653  1111  1  125678888899888 9999999999999863  5554


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCC
Q 009568          154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG  233 (532)
Q Consensus       154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~  233 (532)
                      ..+     ++.+.+++.++++.+|..|++++++++...+..   +...+.++.+..+| .+.++.++..|+++|..++..
T Consensus       120 ~~l-----~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~  190 (591)
T 2vgl_B          120 EYL-----CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLI-ADSNPMVVANAVAALSEISES  190 (591)
T ss_dssp             HHH-----HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTT-SCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHH-----HHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHh-CCCChhHHHHHHHHHHHHHhh
Confidence            444     478999999999999999999999998765542   22235678888888 688999999999999999987


Q ss_pred             CCCC-CcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHH
Q 009568          234 KPQP-PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN  312 (532)
Q Consensus       234 ~~~~-~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~n  312 (532)
                      .+.. ........++.|+..+...++..+..++.++..++...+...     ..+++.+..++.+.++.++..|++++..
T Consensus       191 ~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~i~~  265 (591)
T 2vgl_B          191 HPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHANSAVVLSAVKVLMK  265 (591)
T ss_dssp             CCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSSTTHHHHHHHHHHHH
T ss_pred             CCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence            6433 233445667788888888899999999999998885544332     2567888889999999999999999999


Q ss_pred             hhcC---CcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHH
Q 009568          313 IVTG---DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKK  389 (532)
Q Consensus       313 l~~~---~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~  389 (532)
                      +...   +++..+.+. ..+.+.|+.++. + ++.+|..|+.+|+.++...++.+..     .+..+. .+.+++..+|.
T Consensus       266 l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~-d~~vr~~aL~~l~~i~~~~p~~~~~-----~~~~~~-~~~~d~~~Ir~  336 (591)
T 2vgl_B          266 FLELLPKDSDYYNMLL-KKLAPPLVTLLS-G-EPEVQYVALRNINLIVQKRPEILKQ-----EIKVFF-VKYNDPIYVKL  336 (591)
T ss_dssp             SCCSCCBTTBSHHHHH-HHTHHHHHHHTT-S-CHHHHHHHHHHHHHHHHHCCSTTTT-----CTTTTS-CCTTSCHHHHH
T ss_pred             HhhccCCCHHHHHHHH-HHHHHHHHHHhc-C-CccHHHHHHHHHHHHHHhChHHHHH-----HHHhhe-eccCChHHHHH
Confidence            9753   233333332 355677776664 6 8999999999999998744432211     111222 22234588999


Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 009568          390 EAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG  445 (532)
Q Consensus       390 ~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~  445 (532)
                      .|++.|.+++...+.   ..     +++.|..++++.|.+++..++++|..+....
T Consensus       337 ~al~~L~~l~~~~nv---~~-----iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~  384 (591)
T 2vgl_B          337 EKLDIMIRLASQANI---AQ-----VLAELKEYATEVDVDFVRKAVRAIGRCAIKV  384 (591)
T ss_dssp             HHHHHHHHTCCSSTH---HH-----HHHHHHHHTTSSCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCChhhH---HH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC
Confidence            999999999875442   22     5667778888889999998888888877543

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.72  E-value=3.1e-16  Score=148.20  Aligned_cols=257  Identities=14%  Similarity=0.131  Sum_probs=201.8

Q ss_pred             hCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh
Q 009568          115 QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC  194 (532)
Q Consensus       115 ~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~  194 (532)
                      ..+.++.|+..|.+++ +.++..|+++|+++..  +         ++++.|+.++.++++.++..++++|+.+.......
T Consensus        21 ~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~   88 (280)
T 1oyz_A           21 KKLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE   88 (280)
T ss_dssp             HTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH
T ss_pred             HHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC--c---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc
Confidence            4568999999999887 9999999999999873  2         35788999999999999999999999986432221


Q ss_pred             HHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 009568          195 RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG  274 (532)
Q Consensus       195 ~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~  274 (532)
                      ..      .++.|...+..+.++.++..++++|..+....+    ......++.|..++.++++.++..++++|+++.. 
T Consensus        89 ~~------l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-  157 (280)
T 1oyz_A           89 DN------VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND-  157 (280)
T ss_dssp             HH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---
T ss_pred             hH------HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-
Confidence            11      123333333366789999999999999975421    1234678999999999999999999999998753 


Q ss_pred             ChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHH
Q 009568          275 TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTIS  354 (532)
Q Consensus       275 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~  354 (532)
                                .+.++.|+.++.++++.++..|+++|+.+....+         .+++.|..++.++ ++.+|..|+++|+
T Consensus       158 ----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~~aL~  217 (280)
T 1oyz_A          158 ----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAIIGLS  217 (280)
T ss_dssp             -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHHHHH
T ss_pred             ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence                      2578999999999999999999999999853322         3567899999988 9999999999999


Q ss_pred             HHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCC-CCHHHHHH
Q 009568          355 NITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC-PDPRIVTV  433 (532)
Q Consensus       355 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~-~d~~v~~~  433 (532)
                      ++.  +         ...++.|+..+.++  +++..|+++|+.+..   +         .+++.|..++.. ++++++..
T Consensus       218 ~~~--~---------~~~~~~L~~~l~d~--~vr~~a~~aL~~i~~---~---------~~~~~L~~~l~~~~~~~~~~~  272 (280)
T 1oyz_A          218 YRK--D---------KRVLSVLCDELKKN--TVYDDIIEAAGELGD---K---------TLLPVLDTMLYKFDDNEIITS  272 (280)
T ss_dssp             HTT--C---------GGGHHHHHHHHTSS--SCCHHHHHHHHHHCC---G---------GGHHHHHHHHTTSSCCHHHHH
T ss_pred             HhC--C---------HhhHHHHHHHhcCc--cHHHHHHHHHHhcCc---h---------hhhHHHHHHHhcCCCcHHHHH
Confidence            986  2         23678888888764  499999999999843   1         468888888864 67778877


Q ss_pred             HHHHHH
Q 009568          434 CLEGLE  439 (532)
Q Consensus       434 al~~L~  439 (532)
                      +++.|.
T Consensus       273 ~~~~l~  278 (280)
T 1oyz_A          273 AIDKLK  278 (280)
T ss_dssp             HHHHHT
T ss_pred             HHHHhh
Confidence            777664

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.70  E-value=1.3e-14  Score=145.69  Aligned_cols=368  Identities=15%  Similarity=0.151  Sum_probs=271.8

Q ss_pred             ccHHHHHhhhcCCC-hHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCC-CCHHHHHHHHHHHHHHhcCChh
Q 009568           74 ESLPAMVAGVWSDD-SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE-DYPQLQFEAAWALTNIASGTSE  151 (532)
Q Consensus        74 ~~l~~lv~~L~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~-~~~~~~~~a~~~L~~l~~~~~~  151 (532)
                      +.++.|+..+.+.. .+-|..|+..|+.+...     ....+..+++|.|+..|+.+ ++.++...++.+|.++...+++
T Consensus        21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~-----y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~   95 (651)
T 3grl_A           21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKK-----YRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE   95 (651)
T ss_dssp             HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT-----TTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred             hHHHHHHHHHhhccchhHHHHHHHHHHHHHHH-----hHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence            57889999888554 77899999999999643     22334466899999999864 3478888999999887764432


Q ss_pred             -----------------hHHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch-hHHHHHhc-CChHHHHHHh
Q 009568          152 -----------------NTKVVI-DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR-CRDLVLSQ-GALIPLLAQL  211 (532)
Q Consensus       152 -----------------~~~~i~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~-~~~~~~~~-~~l~~L~~ll  211 (532)
                                       ..+.++ +.+.++.|+.+|++.+..+|..++.+|..++...+. .++.++.. ++++.|+.+|
T Consensus        96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL  175 (651)
T 3grl_A           96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL  175 (651)
T ss_dssp             ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred             ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence                             223333 457899999999999999999999999999987776 77778754 8999999999


Q ss_pred             hhhhhhHHHHHHHHHhhhccCCCCCCCc-ccccchHHHHHHhhcCCC----HHHHHHHHHHHHHhccCChhHHHHHHHhC
Q 009568          212 NERAKLSMLRNATWTLSNFCRGKPQPPF-DQVRPALPALAQLVHSND----EEVLTDACWALSYLSDGTNDKIQAVIEAG  286 (532)
Q Consensus       212 ~~~~~~~~~~~a~~~L~~L~~~~~~~~~-~~~~~~l~~L~~lL~~~d----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~  286 (532)
                       .+....++..++..|.+|+++.+..+. ....++++.|+.++....    ..+..+++.++.+|...+..+...+.+.+
T Consensus       176 -~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~  254 (651)
T 3grl_A          176 -ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGS  254 (651)
T ss_dssp             -GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             -hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence             666788999999999999999744433 445799999999998654    37899999999999999888888899999


Q ss_pred             chHHHHHhhCCCCcc------c---hhhHHHHHHHhhcCCc------chhHHHhhcCchHHHHHHhcCCC-chhHHHHHH
Q 009568          287 VCPRLVELLGHPSPS------V---LIPALRTVGNIVTGDD------FQTQCIITYGALPYLLGLLTHSH-KKSIKKEAC  350 (532)
Q Consensus       287 ~l~~L~~lL~~~~~~------v---~~~al~~L~nl~~~~~------~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~  350 (532)
                      .++.|..+|..++..      .   ...++.++.-++....      .....+.++|+++.|++++..+. ...++.+|.
T Consensus       255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al  334 (651)
T 3grl_A          255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETI  334 (651)
T ss_dssp             CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred             CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHH
Confidence            999999999754322      1   2226667777776532      34557789999999999987542 457999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcC---------CHHHHHHHHhcC-chhHHHHHHHHHHHhhcCCCHHHHHHHHHc----C--
Q 009568          351 WTISNITAGNRDQIQAVIDAG---------LVGPLVNLLQNA-EFDIKKEAAWAISNATSGGTHEQIKYLVRE----G--  414 (532)
Q Consensus       351 ~~L~nl~~~~~~~~~~l~~~~---------~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~----~--  414 (532)
                      .+++.+..+++.....+.+..         ++..|+.++.+. ..++|..|+.++..+..+.. +....++..    .  
T Consensus       335 ~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~-~~Q~~i~~~llp~~~~  413 (651)
T 3grl_A          335 NTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQ-KGQGEIVSTLLPSTID  413 (651)
T ss_dssp             HHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTSSCCCC
T ss_pred             HHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCH-HHHHHHHHhcCCcccc
Confidence            999999999988777776532         233344444443 57899999999999998743 322233321    0  


Q ss_pred             ----Ch---HHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhh
Q 009568          415 ----CI---KPLCDLFVCPDPRIVTVCLEGLENILKVGEAE  448 (532)
Q Consensus       415 ----~l---~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~  448 (532)
                          .+   ..++.-+-+.|+.-.-.+.-++..++......
T Consensus       414 ~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~~~  454 (651)
T 3grl_A          414 ATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQ  454 (651)
T ss_dssp             CTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             cCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCHHH
Confidence                11   12344455567754445666677777665543

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.68  E-value=5e-15  Score=155.34  Aligned_cols=227  Identities=16%  Similarity=0.102  Sum_probs=153.8

Q ss_pred             hcCCCCCchHHhhhhhHHHHHHHHHhhHHHHHhhh-------hhccCCCCCCCCCCCccchhhhhhccHHHHHhhhcCCC
Q 009568           15 RYKVAVDADEGRRRREDNMVEIRKNKREESLLKKR-------REGLQSQQFPPPAPASNLNLQTKLESLPAMVAGVWSDD   87 (532)
Q Consensus        15 ~~k~~~~~~~~~~~r~~~~~~~Rk~~r~~~~~~~r-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~s~~   87 (532)
                      ..++.++.++.+++-.....+||+.-++..-.+|+       -..+.+.+.              -.....+++.+.+++
T Consensus        18 ~ir~~~~~~~e~~~i~~e~~~ir~~l~~~~~~~k~~~l~kli~~~~~G~d~--------------~~~~~~vik~~~s~~   83 (618)
T 1w63_A           18 TIRTARTQAEEREMIQKECAAIRSSFREEDNTYRCRNVAKLLYMHMLGYPA--------------HFGQLECLKLIASQK   83 (618)
T ss_dssp             HHTTCCCHHHHHHHHHHHHHHHHHHHTTTCTTTHHHHHHHHHHHHHTTCCC--------------GGGHHHHHHHHHSSS
T ss_pred             HHHcCCChHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHcCCCC--------------cchHHHHHHHHcCCc
Confidence            33445555666666666677777665433221111       111111110              135678888889999


Q ss_pred             hHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH
Q 009568           88 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK  167 (532)
Q Consensus        88 ~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~  167 (532)
                      ...+..+.-.+..++..  ++..  ++  -+++.|.+-|++++ +.++..|+++|+++..  ++...     .+++.+..
T Consensus        84 ~~~Krl~Yl~~~~~~~~--~~e~--~~--l~in~l~kDL~~~n-~~vr~lAL~~L~~i~~--~~~~~-----~l~~~l~~  149 (618)
T 1w63_A           84 FTDKRIGYLGAMLLLDE--RQDV--HL--LMTNCIKNDLNHST-QFVQGLALCTLGCMGS--SEMCR-----DLAGEVEK  149 (618)
T ss_dssp             HHHHHHHHHHHHHHCCC--CHHH--HH--HHHHHHHHHHSCSS-SHHHHHHHHHHHHHCC--HHHHH-----HHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCC--CcHH--HH--HHHHHHHHhcCCCC-HhHHHHHHHHHHhcCC--HHHHH-----HHHHHHHH
Confidence            98888888888888753  2211  11  15788888888888 8999999999999985  44332     34688899


Q ss_pred             hhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHH
Q 009568          168 LLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP  247 (532)
Q Consensus       168 lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~  247 (532)
                      +|.++++.+|..|+.+++++....|...     .++++.+..++ .+.++.++..++++|..++...+.. ......++|
T Consensus       150 ~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL-~D~d~~V~~~Al~~L~~i~~~~~~~-~~~~~~~v~  222 (618)
T 1w63_A          150 LLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLL-NEKNHGVLHTSVVLLTEMCERSPDM-LAHFRKLVP  222 (618)
T ss_dssp             HHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTST-TCCCHHHHHHHHHHHHHHCCSHHHH-HHHHHTTHH
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHh-CCCCHhHHHHHHHHHHHHHHhChHH-HHHHHHHHH
Confidence            9999999999999999999987655432     24667777777 6778999999999999998764221 122345667


Q ss_pred             HHHHhhcC---------------CCHHHHHHHHHHHHHhccCCh
Q 009568          248 ALAQLVHS---------------NDEEVLTDACWALSYLSDGTN  276 (532)
Q Consensus       248 ~L~~lL~~---------------~d~~v~~~a~~~L~~l~~~~~  276 (532)
                      .++.+|..               .++..+..++.+++.++...+
T Consensus       223 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~  266 (618)
T 1w63_A          223 QLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDD  266 (618)
T ss_dssp             HHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCH
T ss_pred             HHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCH
Confidence            66666542               477888888888888876544

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.68  E-value=4.5e-15  Score=140.20  Aligned_cols=254  Identities=14%  Similarity=0.096  Sum_probs=199.6

Q ss_pred             ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (532)
Q Consensus        74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  153 (532)
                      ..++.+++.|.++++.++..|+..|.++..            .+.++.|+.+|.+++ +.++..|+++|+.+..... ..
T Consensus        23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~~~-~~   88 (280)
T 1oyz_A           23 LNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKK-CE   88 (280)
T ss_dssp             SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTT-TH
T ss_pred             hhHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCC-HHHHHHHHHHHHHhccccc-cc
Confidence            468999999999999999999999998852            237899999999988 9999999999999875222 11


Q ss_pred             HHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccC
Q 009568          154 KVVIDHGAVPIFV-KLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR  232 (532)
Q Consensus       154 ~~i~~~g~i~~L~-~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~  232 (532)
                      ..     +++.|. .++.++++.++..++++|+++....+....     ..++.|+..+ .+.++.++..++++|.++..
T Consensus        89 ~~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~~  157 (280)
T 1oyz_A           89 DN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITA-FDKSTNVRRATAFAISVIND  157 (280)
T ss_dssp             HH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHT-TCSCHHHHHHHHHHHHTC--
T ss_pred             hH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHh-hCCCHHHHHHHHHHHHhcCC
Confidence            11     234444 245678999999999999999743332222     2467788888 77889999999999998764


Q ss_pred             CCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHH
Q 009568          233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN  312 (532)
Q Consensus       233 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~n  312 (532)
                      .          ..+|.|..++.++++.++..++++|+.+....+         .+++.|+.++.++++.++..|+++|+.
T Consensus       158 ~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~  218 (280)
T 1oyz_A          158 K----------ATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSY  218 (280)
T ss_dssp             -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             H----------HHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            2          478999999999999999999999999853332         456888999999999999999999999


Q ss_pred             hhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc-CchhHHHHH
Q 009568          313 IVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN-AEFDIKKEA  391 (532)
Q Consensus       313 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a  391 (532)
                      +.           +...++.|...+.++ +  ++..|+++|+.+..  +         ..+|.|..++.. .+.++...+
T Consensus       219 ~~-----------~~~~~~~L~~~l~d~-~--vr~~a~~aL~~i~~--~---------~~~~~L~~~l~~~~~~~~~~~~  273 (280)
T 1oyz_A          219 RK-----------DKRVLSVLCDELKKN-T--VYDDIIEAAGELGD--K---------TLLPVLDTMLYKFDDNEIITSA  273 (280)
T ss_dssp             TT-----------CGGGHHHHHHHHTSS-S--CCHHHHHHHHHHCC--G---------GGHHHHHHHHTTSSCCHHHHHH
T ss_pred             hC-----------CHhhHHHHHHHhcCc-c--HHHHHHHHHHhcCc--h---------hhhHHHHHHHhcCCCcHHHHHH
Confidence            86           225688899999765 3  89999999999853  2         367889998875 467788888


Q ss_pred             HHHHH
Q 009568          392 AWAIS  396 (532)
Q Consensus       392 ~~aL~  396 (532)
                      ..+|.
T Consensus       274 ~~~l~  278 (280)
T 1oyz_A          274 IDKLK  278 (280)
T ss_dssp             HHHHT
T ss_pred             HHHhh
Confidence            77764

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.64  E-value=1.4e-14  Score=159.21  Aligned_cols=355  Identities=14%  Similarity=0.222  Sum_probs=245.8

Q ss_pred             cHHHHHhhhcC-------CChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 009568           75 SLPAMVAGVWS-------DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS  147 (532)
Q Consensus        75 ~l~~lv~~L~s-------~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~  147 (532)
                      .+|.++..+..       +++.++..|...|..++..-  +  ..++ ..++|.+.+.+.+.+ ...+..|+++++.++.
T Consensus       325 il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~--~--~~~~-~~l~~~l~~~l~~~~-~~~r~~a~~~l~~i~~  398 (861)
T 2bpt_A          325 VVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNC--G--NHIL-EPVLEFVEQNITADN-WRNREAAVMAFGSIMD  398 (861)
T ss_dssp             HHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHH--G--GGGH-HHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHc--c--HhHH-HHHHHHHHHHcCCCC-hhHHHHHHHHHHHHHc
Confidence            46677777764       23578888889998887632  1  1111 236777778888877 8999999999999998


Q ss_pred             CCh-hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh---HHHHHhcCChHHHHHHhhhhhhhHHHHHH
Q 009568          148 GTS-ENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC---RDLVLSQGALIPLLAQLNERAKLSMLRNA  223 (532)
Q Consensus       148 ~~~-~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~---~~~~~~~~~l~~L~~ll~~~~~~~~~~~a  223 (532)
                      +.. +.....+. .+++.|+..+.++++.+|..++|+++.++......   ...  -..+++.++..+ .+. +.++..+
T Consensus       399 ~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~~l~~l~~~l-~~~-~~v~~~a  473 (861)
T 2bpt_A          399 GPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH--LPGVVQACLIGL-QDH-PKVATNC  473 (861)
T ss_dssp             SSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT--HHHHHHHHHHHH-TSC-HHHHHHH
T ss_pred             CCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH--HHHHHHHHHHHh-ccC-hHHHHHH
Confidence            643 33333332 47889999999999999999999999997532110   001  112466777777 333 7899999


Q ss_pred             HHHhhhccCCCC----CCCcccccchHHHHHHhhcCCC--HHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCC
Q 009568          224 TWTLSNFCRGKP----QPPFDQVRPALPALAQLVHSND--EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH  297 (532)
Q Consensus       224 ~~~L~~L~~~~~----~~~~~~~~~~l~~L~~lL~~~d--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~  297 (532)
                      +|++.+++....    ..-......+++.|.+++.+.+  +.++..++.+++.++..........+. .+++.++..+..
T Consensus       474 ~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~  552 (861)
T 2bpt_A          474 SWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQ  552 (861)
T ss_dssp             HHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHH
Confidence            999999987532    1112334667788888887544  789999999999998654433333333 456666666542


Q ss_pred             ---------------CCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCch-hHHHHHHHHHHHHhcCCH
Q 009568          298 ---------------PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKK-SIKKEACWTISNITAGNR  361 (532)
Q Consensus       298 ---------------~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-~v~~~a~~~L~nl~~~~~  361 (532)
                                     ....++..++.+|++++............ .+++.+..++.+. +. .++..++++++.++....
T Consensus       553 ~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~-~~~~v~~~~~~~l~~l~~~~~  630 (861)
T 2bpt_A          553 TMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGLFFRLLEKK-DSAFIEDDVFYAISALAASLG  630 (861)
T ss_dssp             HTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHHHHST-TGGGTHHHHHHHHHHHHHHHG
T ss_pred             HHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHccC-CCCcHHHHHHHHHHHHHHHHh
Confidence                           13346778999999998765543222222 5778888888877 66 899999999999986322


Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCC--HHHHHHHHHHHH
Q 009568          362 DQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPD--PRIVTVCLEGLE  439 (532)
Q Consensus       362 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d--~~v~~~al~~L~  439 (532)
                      ......+.. ++|.|+..+...++.++..++.++..++.........++  ..+++.+...+.+++  +.++..++.++.
T Consensus       631 ~~~~~~l~~-i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l~  707 (861)
T 2bpt_A          631 KGFEKYLET-FSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVFG  707 (861)
T ss_dssp             GGGHHHHHH-HHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHHH
T ss_pred             hhHHHHHHH-HHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCccccHhhhHHHHHHHH
Confidence            323333332 788999999878889999999999998875443333332  246777888887654  889999999999


Q ss_pred             HHHHhhh
Q 009568          440 NILKVGE  446 (532)
Q Consensus       440 ~l~~~~~  446 (532)
                      .++....
T Consensus       708 ~l~~~~~  714 (861)
T 2bpt_A          708 DIASNIG  714 (861)
T ss_dssp             HHHHHHG
T ss_pred             HHHHHhh
Confidence            9987643

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.63  E-value=1.4e-14  Score=159.01  Aligned_cols=396  Identities=12%  Similarity=0.146  Sum_probs=264.8

Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCh-----
Q 009568           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTS-----  150 (532)
Q Consensus        76 l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~-----  150 (532)
                      ++.+.+.+.+.++..+..|+.++..++.+.........+ ..++|.++..+.+++ +.+|..++|+++.++....     
T Consensus       371 ~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~  448 (861)
T 2bpt_A          371 LEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQS-LQVKETTAWCIGRIADSVAESIDP  448 (861)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGGSCT
T ss_pred             HHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHhhhhcCC
Confidence            344555667888999999999999998642101122222 247899999999887 9999999999999986211     


Q ss_pred             -hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-----chhHHHHHhcCChHHHHHHhhh-hhhhHHHHHH
Q 009568          151 -ENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS-----PRCRDLVLSQGALIPLLAQLNE-RAKLSMLRNA  223 (532)
Q Consensus       151 -~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-----~~~~~~~~~~~~l~~L~~ll~~-~~~~~~~~~a  223 (532)
                       ....     .+++.|+..+.++ +.++..++++|.+++...     ......+  ..+++.|+..+.. +.+..++..+
T Consensus       449 ~~~~~-----~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a  520 (861)
T 2bpt_A          449 QQHLP-----GVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASA  520 (861)
T ss_dssp             TTTHH-----HHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHH
T ss_pred             HHHHH-----HHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHH
Confidence             1111     3467888888765 899999999999987431     1121221  1246667777742 2347889999


Q ss_pred             HHHhhhccCCCCCCCcccccchHHHHHHhhcCC---------------CHHHHHHHHHHHHHhccCChhHHHHHHHhCch
Q 009568          224 TWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN---------------DEEVLTDACWALSYLSDGTNDKIQAVIEAGVC  288 (532)
Q Consensus       224 ~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~---------------d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l  288 (532)
                      +.++..++...+.........++|.++..+...               ...++..++.++..++............ .++
T Consensus       521 ~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~  599 (861)
T 2bpt_A          521 FSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLM  599 (861)
T ss_dssp             HHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHH
T ss_pred             HHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHH
Confidence            999999987654332333456667777666521               3457788999999888654432222222 567


Q ss_pred             HHHHHhhCCCCc-cchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 009568          289 PRLVELLGHPSP-SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAV  367 (532)
Q Consensus       289 ~~L~~lL~~~~~-~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l  367 (532)
                      +.++..+.+.+. .++..++.+++.++..........+. .++|.+...+.+. ++.++..++++++.++....+.+...
T Consensus       600 ~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~  677 (861)
T 2bpt_A          600 GLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRY  677 (861)
T ss_dssp             HHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHH
T ss_pred             HHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhchhccch
Confidence            778888877766 89999999999998654433333333 4788999999777 88899999999999986433333333


Q ss_pred             HHcCCHHHHHHHHhcCc--hhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCC-----------HHHHHHH
Q 009568          368 IDAGLVGPLVNLLQNAE--FDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPD-----------PRIVTVC  434 (532)
Q Consensus       368 ~~~~~i~~L~~ll~~~~--~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d-----------~~v~~~a  434 (532)
                      +. .+++.++..+.+.+  +++|..++.+++.++.........++-  .+++.+...+....           ..++..+
T Consensus       678 ~~-~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~--~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~  754 (861)
T 2bpt_A          678 SD-AMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLN--DIMALCVAAQNTKPENGTLEALDYQIKVLEAV  754 (861)
T ss_dssp             HH-HHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHH--HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHH
Confidence            32 36788888888764  889999999999998754334444432  36777777776431           3577888


Q ss_pred             HHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCC----CHHHHHHHHHHHHHhCC
Q 009568          435 LEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHD----NNEIYEKAVKILETYWL  498 (532)
Q Consensus       435 l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~----~~~v~~~a~~il~~~~~  498 (532)
                      ++++..++........      ...+|...+     ++.+.....+.    +..++..|..++..+..
T Consensus       755 l~~~~~i~~~l~~~~~------~~~~~~~~i-----~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~  811 (861)
T 2bpt_A          755 LDAYVGIVAGLHDKPE------ALFPYVGTI-----FQFIAQVAEDPQLYSEDATSRAAVGLIGDIAA  811 (861)
T ss_dssp             HHHHHHHHHHTTTCHH------HHGGGHHHH-----HHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHH------HHHHHHHHH-----HHHHHHHHcCcccCCcHHHHHHHHHHHHHHHH
Confidence            9999888865321000      122233222     34454444442    78999999988887643

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.60  E-value=6.5e-14  Score=142.22  Aligned_cols=389  Identities=13%  Similarity=0.087  Sum_probs=267.0

Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCChhhHH
Q 009568           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-YPQLQFEAAWALTNIASGTSENTK  154 (532)
Q Consensus        76 l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~-~~~~~~~a~~~L~~l~~~~~~~~~  154 (532)
                      +..++..+.++|..+|..|...|.++...  +       ..++++.|+.++.+.+ ++.+|..|+..|.++.........
T Consensus         3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~--~-------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~   73 (462)
T 1ibr_B            3 LITILEKTVSPDRLELEAAQKFLERAAVE--N-------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK   73 (462)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHH--H-------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhh--C-------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHH
Confidence            56777788899999999999999886531  0       1236777888887652 489999999999998753311100


Q ss_pred             H-----------HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHHHhhhhh--hhHHH
Q 009568          155 V-----------VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNERA--KLSML  220 (532)
Q Consensus       155 ~-----------i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~~~l~~L~~ll~~~~--~~~~~  220 (532)
                      .           -....+-..|+..|.++++.+ ..++.+++.++... +..    .-.+.++.|+..+ .+.  ++.++
T Consensus        74 ~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~----~w~~ll~~L~~~l-~~~~~~~~~r  147 (462)
T 1ibr_B           74 AQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN----QWPELIPQLVANV-TNPNSTEHMK  147 (462)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT----CCTTHHHHHHHHH-HCTTCCHHHH
T ss_pred             HHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc----ccHHHHHHHHHHh-ccCCCCHHHH
Confidence            0           001122356777788877778 88999999987432 210    0134677788888 455  78899


Q ss_pred             HHHHHHhhhccCCC-CCCCcccccchHHHHHHhhcCC--CHHHHHHHHHHHHHhccCChhHHH-HHHHhCchHHHHHhhC
Q 009568          221 RNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSN--DEEVLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLG  296 (532)
Q Consensus       221 ~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~l~~L~~lL~  296 (532)
                      ..++.+|..++... +.........+++.+..++.++  ++.++..++++++++.....+... .....-+++.+...+.
T Consensus       148 ~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  227 (462)
T 1ibr_B          148 ESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ  227 (462)
T ss_dssp             HHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC
Confidence            99999999999753 2222233456888888999887  789999999999987643221111 0111124666777778


Q ss_pred             CCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH--------------
Q 009568          297 HPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD--------------  362 (532)
Q Consensus       297 ~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~--------------  362 (532)
                      ++++.++..++++|+.++...+......+..++++.++..+.+. ++.++..|++.+..++.....              
T Consensus       228 ~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~  306 (462)
T 1ibr_B          228 CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRP  306 (462)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCC
Confidence            88899999999999999976553322222226778888888887 899999999999988753110              


Q ss_pred             -------HHHHHHHcCCHHHHHHHHhc-------CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCH
Q 009568          363 -------QIQAVIDAGLVGPLVNLLQN-------AEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDP  428 (532)
Q Consensus       363 -------~~~~l~~~~~i~~L~~ll~~-------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~  428 (532)
                             .+...+ ..++|.++..+..       .+..+|..|+.+|..++.........     .+++.+...+.++++
T Consensus       307 ~~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~-----~~~~~l~~~l~~~~~  380 (462)
T 1ibr_B          307 PEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP-----HVLPFIKEHIKNPDW  380 (462)
T ss_dssp             SSCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHH-----HHHHHHHHHTTCSSH
T ss_pred             ccchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhcCCCh
Confidence                   111111 2356777777743       24579999999999988754322222     367788888999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009568          429 RIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLE  499 (532)
Q Consensus       429 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~  499 (532)
                      .++..++.+|..+.......        ...++   +  ...++.+..+..++++.|+..|.+.+.+|...
T Consensus       381 ~~r~aal~~l~~l~~~~~~~--------~~~~~---l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~  438 (462)
T 1ibr_B          381 RYRDAAVMAFGCILEGPEPS--------QLKPL---V--IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  438 (462)
T ss_dssp             HHHHHHHHHHHHTSSSSCTT--------TTCTT---T--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCcHH--------HHHHH---H--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            99999999999998633211        01111   1  34567788888899999999999999998653

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.60  E-value=7.5e-14  Score=153.59  Aligned_cols=274  Identities=19%  Similarity=0.214  Sum_probs=193.2

Q ss_pred             HHHHHhhhcCC--ChHHHHHHHHHHHHHhcCCCCCch-hHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009568           76 LPAMVAGVWSD--DSSLQLEATTQFRKLLSIERSPPI-EEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN  152 (532)
Q Consensus        76 l~~lv~~L~s~--~~~~~~~a~~~l~~l~~~~~~~~~-~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~  152 (532)
                      ++.+.+.+.++  ++.++..|+.++..++..- .... .......+++.+...+.+++ ++++..++++|..++...+..
T Consensus       174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~-~~~~~~~~~~~~il~~l~~~~~~~~-~~vr~~a~~~l~~l~~~~~~~  251 (876)
T 1qgr_A          174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFT-KANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQY  251 (876)
T ss_dssp             HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC-HHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSGGG
T ss_pred             HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhHHH
Confidence            45566667766  5789999999999987531 1111 11111236788888887777 899999999999999755554


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh------------------HHHH--HhcCChHHHHHHhh
Q 009568          153 TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC------------------RDLV--LSQGALIPLLAQLN  212 (532)
Q Consensus       153 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~------------------~~~~--~~~~~l~~L~~ll~  212 (532)
                      ....+...+++.++..+.+.++.++..+++++..++......                  ....  .-..+++.++..+.
T Consensus       252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~  331 (876)
T 1qgr_A          252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLT  331 (876)
T ss_dssp             CHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhh
Confidence            444444577888888888888999999999999887431100                  0000  00223555666663


Q ss_pred             h------hhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh-hHHHHHHHh
Q 009568          213 E------RAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN-DKIQAVIEA  285 (532)
Q Consensus       213 ~------~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~-~~~~~~~~~  285 (532)
                      .      +.+..++..+..+|..++...+   ......+++.+...+.++++.++..++++++.++.+.. +.....+ .
T Consensus       332 ~~~~d~~~~~~~~r~~a~~~l~~l~~~~~---~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~  407 (876)
T 1qgr_A          332 KQDENDDDDDWNPCKAAGVCLMLLATCCE---DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-I  407 (876)
T ss_dssp             CCCSSCCTTCCCHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-H
T ss_pred             cccccccccccHHHHHHHHHHHHHHHHCc---HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-H
Confidence            2      2345788888888888876533   13345677888888888999999999999999997754 4333333 3


Q ss_pred             CchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchh--HHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 009568          286 GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQT--QCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (532)
Q Consensus       286 ~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~--~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  358 (532)
                      .+++.++..+.++++.++..|++++++++...+...  ...+ ..+++.++..|.+  ++.++..|+|+|++++.
T Consensus       408 ~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l-~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~  479 (876)
T 1qgr_A          408 QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL-APLLQCLIEGLSA--EPRVASNVCWAFSSLAE  479 (876)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH-HHHHHHHHHHTTS--CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH-HHHHHHHHHHHcC--CHHHHHHHHHHHHHHHH
Confidence            689999999999999999999999999997644321  1111 2567788888865  47899999999999985

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.59  E-value=1.8e-13  Score=150.64  Aligned_cols=405  Identities=14%  Similarity=0.166  Sum_probs=259.6

Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh---
Q 009568           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN---  152 (532)
Q Consensus        76 l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~---  152 (532)
                      ++.+...+.++++.++..|+.++..++.+......... -..++|.++..+.+++ +.+|..|+|+|++++...+..   
T Consensus       368 l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~~  445 (876)
T 1qgr_A          368 LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPS-VVVRDTAAWTVGRICELLPEAAIN  445 (876)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHCGGGTSS
T ss_pred             HHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCchhccc
Confidence            45556677788999999999999999875310112222 2458999999999888 999999999999999743321   


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc---------------hhHHHHHhcCChHHHHHHhhhhh--
Q 009568          153 TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP---------------RCRDLVLSQGALIPLLAQLNERA--  215 (532)
Q Consensus       153 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~---------------~~~~~~~~~~~l~~L~~ll~~~~--  215 (532)
                      ...+  ..+++.|+..+.++ +.++..++|+|++++....               .....+  ..+++.|+..+....  
T Consensus       446 ~~~l--~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~~~~  520 (876)
T 1qgr_A          446 DVYL--APLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--ELIVQKLLETTDRPDGH  520 (876)
T ss_dssp             TTTH--HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HHHHHHHHHHTTSCSSC
T ss_pred             HHHH--HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH--HHHHHHHHHHHhCcCcc
Confidence            0111  14567788888764 8999999999999974311               011111  124566666663321  


Q ss_pred             hhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcC-----------CC----HHHHHHHHHHHHHhccCCh-hHH
Q 009568          216 KLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHS-----------ND----EEVLTDACWALSYLSDGTN-DKI  279 (532)
Q Consensus       216 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~-----------~d----~~v~~~a~~~L~~l~~~~~-~~~  279 (532)
                      +..++..+..++..++...+.........+++.++..+..           .|    ++++..+++++..++.... ...
T Consensus       521 ~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~  600 (876)
T 1qgr_A          521 QNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDA  600 (876)
T ss_dssp             STTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhh
Confidence            3467778888888888765443334455667776666542           22    4567888999999887654 333


Q ss_pred             HHHHHhCchHHHHHhhCCCC--ccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHh
Q 009568          280 QAVIEAGVCPRLVELLGHPS--PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT  357 (532)
Q Consensus       280 ~~~~~~~~l~~L~~lL~~~~--~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~  357 (532)
                      .... ..+++.++.++.+..  +.++..++.+++.++..........+. .+++.+...|.+..++.+|..|+++++.++
T Consensus       601 ~~~~-~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~  678 (876)
T 1qgr_A          601 LQIS-DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYME-AFKPFLGIGLKNYAEYQVCLAAVGLVGDLC  678 (876)
T ss_dssp             HTTH-HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred             hHHH-HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCcchHHHHHHHHHHHHHHH
Confidence            3333 357888888887764  468899999999998743322222233 467888888876436789999999999998


Q ss_pred             cCCHHHHHHHHHcCCHHHHHHHHhc--CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCC----CH---
Q 009568          358 AGNRDQIQAVIDAGLVGPLVNLLQN--AEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCP----DP---  428 (532)
Q Consensus       358 ~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~----d~---  428 (532)
                      ......+...+. .+++.++..+.+  .+.+++..+++++++++.....+...++  ..+++.+...+...    |+   
T Consensus       679 ~~~~~~~~~~~~-~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l--~~~~~~l~~~~~~~~~~~d~~~~  755 (876)
T 1qgr_A          679 RALQSNIIPFCD-EVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYL--EVVLNTLQQASQAQVDKSDYDMV  755 (876)
T ss_dssp             HHHGGGGHHHHH-HHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHTCCCCTTCHHHH
T ss_pred             HHHHHhhhhhHH-HHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHH--HHHHHHHHHHHhccCCCCChHHH
Confidence            632223333333 377888888887  3678999999999999763222332222  12566666666543    22   


Q ss_pred             ----HHHHHHHHHHHHHHHhhhhhhh--ccCCCccchHHHHHHHHhccHHHHHHHhcCC--CHHHHHHHHHHHHHhCC
Q 009568          429 ----RIVTVCLEGLENILKVGEAEKN--MGTATADVNQYAQLVEEAEGLEKIENLQSHD--NNEIYEKAVKILETYWL  498 (532)
Q Consensus       429 ----~v~~~al~~L~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~--~~~v~~~a~~il~~~~~  498 (532)
                          .++..++.++..++........  ..+.+ ...+|...+     +..+..+..++  ++.++..|..++..+..
T Consensus       756 ~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~i-----~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~  827 (876)
T 1qgr_A          756 DYLNELRESCLEAYTGIVQGLKGDQENVHPDVM-LVQPRVEFI-----LSFIDHIAGDEDHTDGVVACAAGLIGDLCT  827 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGG-GSGGGHHHH-----HHHHHHHHTCSCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCcccccchHH-HHHHHHHHH-----HHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence                6788888888888775432100  00000 223344333     24455554555  78999988888777543

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.58  E-value=2.1e-13  Score=155.32  Aligned_cols=405  Identities=13%  Similarity=0.134  Sum_probs=271.0

Q ss_pred             cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (532)
Q Consensus        75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  154 (532)
                      .++.+++.+.++|++++..|+..|.+.+... ......-....+++.+++.|.+.+ +.+|..|+.+|+.++...++.  
T Consensus         7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~-~~~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~~--   82 (1230)
T 1u6g_C            7 HISNLLEKMTSSDKDFRFMATNDLMTELQKD-SIKLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEY--   82 (1230)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSS-CCSCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHH--
T ss_pred             HHHHHHHhcCCCCHhHHHHHHHHHHHHHccc-ccCCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCHH--
Confidence            5789999999999999999999999987643 111111122347888999998777 999999999999999754431  


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh------HHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhh
Q 009568          155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC------RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLS  228 (532)
Q Consensus       155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~------~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~  228 (532)
                      .+  ..+++.|+..+.++++.+|..++.+|+.++......      .... -..+++.|+..+.++.+..++..++.+|.
T Consensus        83 ~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~-~~~llp~L~~~l~~~~~~~~~~~al~~l~  159 (1230)
T 1u6g_C           83 QV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIMA  159 (1230)
T ss_dssp             HH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred             HH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHH-HHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence            11  135688888888888899999999999998433221      1111 12357888888843567889999999999


Q ss_pred             hccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCC-CccchhhHH
Q 009568          229 NFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP-SPSVLIPAL  307 (532)
Q Consensus       229 ~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~al  307 (532)
                      .++...+..-......+++.+...+.++++.++..++.+++.++...++.   ++ ..+++.++..|.+. ++.++..++
T Consensus       160 ~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~~-~~~l~~l~~~L~~~~~~~~r~~a~  235 (1230)
T 1u6g_C          160 DMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---VF-VDLIEHLLSELSKNDSMSTTRTYI  235 (1230)
T ss_dssp             HHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHH
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHHHhccCCchhHHHHHH
Confidence            99864322222244678888888999889999999999999998765432   12 25677788777554 357888899


Q ss_pred             HHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc-----
Q 009568          308 RTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN-----  382 (532)
Q Consensus       308 ~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-----  382 (532)
                      .+++.++...+......+ ..+++.++..+.+. ++.+|..++++++.++...+..+...+. .++|.++..+..     
T Consensus       236 ~~l~~l~~~~~~~~~~~l-~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~~~~l~-~li~~ll~~l~~d~~~~  312 (1230)
T 1u6g_C          236 QCIAAISRQAGHRIGEYL-EKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNYN  312 (1230)
T ss_dssp             HHHHHHHHHSSGGGTTSC-TTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC----
T ss_pred             HHHHHHHHHhHHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHChHHHHHhHH-HHHHHHHHHhCCCCCCC
Confidence            999999875543221112 36889999999887 8999999999999988743322222221 133444333320     


Q ss_pred             --------------------------------CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHH
Q 009568          383 --------------------------------AEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRI  430 (532)
Q Consensus       383 --------------------------------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v  430 (532)
                                                      ...++|..|+.++..++.........+  -..+++.+...+.+.++.+
T Consensus       313 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~--~~~l~~~l~~~l~d~~~~V  390 (1230)
T 1u6g_C          313 YDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEF--YKTVSPALISRFKEREENV  390 (1230)
T ss_dssp             --------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHH--HTTTHHHHHSTTSCSSSHH
T ss_pred             CcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHH--HHHHHHHHHHHcCCCchHH
Confidence                                            124579999999999987433212222  2357888999998889999


Q ss_pred             HHHHHHHHHHHHHhhhhhhh-ccCC-------CccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009568          431 VTVCLEGLENILKVGEAEKN-MGTA-------TADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL  498 (532)
Q Consensus       431 ~~~al~~L~~l~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~  498 (532)
                      +..++.++..++........ ....       + ........+  ...++.+.....++++.++..+..++..+..
T Consensus       391 r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l--~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~  463 (1230)
T 1u6g_C          391 KADVFHAYLSLLKQTRPVQSWLCDPDAMEQGET-PLTMLQSQV--PNIVKALHKQMKEKSVKTRQCCFNMLTELVN  463 (1230)
T ss_dssp             HHHHHHHHHHHHHHHCCC------------CCC-HHHHHHHHT--THHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccccccCccccccccc-hHHHHHHHh--hHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence            99999999888864321000 0000       0 000001111  2234555666778888888777777766543

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.56  E-value=1.1e-14  Score=147.93  Aligned_cols=359  Identities=14%  Similarity=0.130  Sum_probs=242.6

Q ss_pred             HHHHHhhhcCC--ChHHHHHHHHHHHHHhcCCCCCc-----------hhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHH
Q 009568           76 LPAMVAGVWSD--DSSLQLEATTQFRKLLSIERSPP-----------IEEVIQSGVVPRFVEFLMREDYPQLQFEAAWAL  142 (532)
Q Consensus        76 l~~lv~~L~s~--~~~~~~~a~~~l~~l~~~~~~~~-----------~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L  142 (532)
                      +..++..+.++  ++.+|..|+..|++++... ...           +..-....+-..++..|.+++ +.+ ..++.++
T Consensus        37 ~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~-~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~-~~v-~~~~~~i  113 (462)
T 1ibr_B           37 LVELSRVLANPGNSQVARVAAGLQIKNSLTSK-DPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YRP-SSASQCV  113 (462)
T ss_dssp             HHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SSS-CSHHHHH
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHhcccc-chHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCC-chh-hHHHHHH
Confidence            34555666554  6889999999999998642 100           111112234556777888777 677 8899999


Q ss_pred             HHHhcCChhhHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHHHhhhhh-hhH
Q 009568          143 TNIASGTSENTKVVIDHGAVPIFVKLLASP--SDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNERA-KLS  218 (532)
Q Consensus       143 ~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~~~l~~L~~ll~~~~-~~~  218 (532)
                      +.++.......   .-.++++.|+..+.++  ++.+++.++.+|+.++.+. +..-.... ..+++.++..+.... +..
T Consensus       114 ~~ia~~~~~~~---~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~  189 (462)
T 1ibr_B          114 AGIACAEIPVN---QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNN  189 (462)
T ss_dssp             HHHHHHHGGGT---CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHH
T ss_pred             HHHHHHhcccc---ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHH
Confidence            99987321100   0136789999999887  8999999999999998643 21111111 125667777774332 688


Q ss_pred             HHHHHHHHhhhccCCCC-C-CCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhC
Q 009568          219 MLRNATWTLSNFCRGKP-Q-PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG  296 (532)
Q Consensus       219 ~~~~a~~~L~~L~~~~~-~-~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~  296 (532)
                      ++..+++++.++..... . ........+++.+...+.+.++.++..+++++..++...+......+..++++.++..+.
T Consensus       190 vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~  269 (462)
T 1ibr_B          190 VKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK  269 (462)
T ss_dssp             HHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999998764321 0 011111225677777788889999999999999998655433222222266777777788


Q ss_pred             CCCccchhhHHHHHHHhhcCCc---------------------chhHHHhhcCchHHHHHHhcCC------CchhHHHHH
Q 009568          297 HPSPSVLIPALRTVGNIVTGDD---------------------FQTQCIITYGALPYLLGLLTHS------HKKSIKKEA  349 (532)
Q Consensus       297 ~~~~~v~~~al~~L~nl~~~~~---------------------~~~~~~~~~~~l~~L~~lL~~~------~~~~v~~~a  349 (532)
                      +.++.++..++..++.++....                     ...+..+ ..++|.++..+...      .+..+|..|
T Consensus       270 ~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a  348 (462)
T 1ibr_B          270 SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAA  348 (462)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHH
Confidence            8889999999999999885320                     0011011 24567777777432      145799999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHH
Q 009568          350 CWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPR  429 (532)
Q Consensus       350 ~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~  429 (532)
                      +.+|+.++...++   .++ ..+++.+...+.+.++.+|..|+.+|+.++.+..++.....+ ..+++.++.+|.++++.
T Consensus       349 ~~~L~~l~~~~~~---~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~  423 (462)
T 1ibr_B          349 GVCLMLLATCCED---DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVV  423 (462)
T ss_dssp             HHHHHHHHHHTTT---THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHH
T ss_pred             HHHHHHHHHhccH---HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCCHH
Confidence            9999999873322   122 236677888888889999999999999999865422111111 35789999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhh
Q 009568          430 IVTVCLEGLENILKVGEA  447 (532)
Q Consensus       430 v~~~al~~L~~l~~~~~~  447 (532)
                      ++..++++|.++......
T Consensus       424 Vr~~a~~~l~~~~~~~~~  441 (462)
T 1ibr_B          424 VRDTAAWTVGRICELLPE  441 (462)
T ss_dssp             HHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHhccc
Confidence            999999999999876543

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.56  E-value=9.8e-13  Score=137.93  Aligned_cols=327  Identities=14%  Similarity=0.165  Sum_probs=225.1

Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 009568           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV  155 (532)
Q Consensus        76 l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  155 (532)
                      +..+-+.+++++...+..++..+..+.... .+.      ..+.+..++++.+++ ...+..+.-.+..++..+++....
T Consensus        36 ~~~ir~~l~~~~~~~k~~~l~kli~~~~~G-~d~------~~~~~~vik~~~s~~-~~~Krl~Yl~~~~~~~~~~e~~~l  107 (618)
T 1w63_A           36 CAAIRSSFREEDNTYRCRNVAKLLYMHMLG-YPA------HFGQLECLKLIASQK-FTDKRIGYLGAMLLLDERQDVHLL  107 (618)
T ss_dssp             HHHHHHHHTTTCTTTHHHHHHHHHHHHHTT-CCC------GGGHHHHHHHHHSSS-HHHHHHHHHHHHHHCCCCHHHHHH
T ss_pred             HHHHHHHhhCCCHHHHHHHHHHHHHHHHcC-CCC------cchHHHHHHHHcCCc-hHHHHHHHHHHHHHhCCCcHHHHH
Confidence            345555666666666666666555544332 221      225667788888887 899999998999999866654332


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCC
Q 009568          156 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP  235 (532)
Q Consensus       156 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~  235 (532)
                           +++.|.+-|.++++.++..|+++|+++..  +..-     ...++.+..++ .+.++.+++.|+.++..+....|
T Consensus       108 -----~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~~~-----~~l~~~l~~~L-~~~~~~VRk~A~~al~~l~~~~p  174 (618)
T 1w63_A          108 -----MTNCIKNDLNHSTQFVQGLALCTLGCMGS--SEMC-----RDLAGEVEKLL-KTSNSYLRKKAALCAVHVIRKVP  174 (618)
T ss_dssp             -----HHHHHHHHHSCSSSHHHHHHHHHHHHHCC--HHHH-----HHHHHHHHHHH-HSCCHHHHHHHHHHHHHHHHHCG
T ss_pred             -----HHHHHHHhcCCCCHhHHHHHHHHHHhcCC--HHHH-----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHCh
Confidence                 35888889999999999999999999963  2221     23577788888 77899999999999999998643


Q ss_pred             CCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCC---------------CCc
Q 009568          236 QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH---------------PSP  300 (532)
Q Consensus       236 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~---------------~~~  300 (532)
                          .....+++.+..++.+.|+.|+..|+++|..++...++....+  ..+++.++.+|.+               .++
T Consensus       175 ----~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~  248 (618)
T 1w63_A          175 ----ELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDP  248 (618)
T ss_dssp             ----GGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCH
T ss_pred             ----HHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCC
Confidence                2334778888899999999999999999999987655422222  1566666665532               345


Q ss_pred             cchhhHHHHHHHhhcCCcchhHH-------H----------------------h--------hcCchHHHHHHhcCCCch
Q 009568          301 SVLIPALRTVGNIVTGDDFQTQC-------I----------------------I--------TYGALPYLLGLLTHSHKK  343 (532)
Q Consensus       301 ~v~~~al~~L~nl~~~~~~~~~~-------~----------------------~--------~~~~l~~L~~lL~~~~~~  343 (532)
                      -.+..++++|+.++..++.....       +                      +        ...+++.|..++.++ ++
T Consensus       249 ~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~-d~  327 (618)
T 1w63_A          249 FLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNN-DK  327 (618)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCS-ST
T ss_pred             hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCC-CC
Confidence            56666777777776654321110       0                      0        002455667777777 78


Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhc
Q 009568          344 SIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLF  423 (532)
Q Consensus       344 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL  423 (532)
                      .+|..|+.+|+.++...+..+    . ...+.++.++.+++..+|..|+.+|..++...+.+   .     +++.|...+
T Consensus       328 ~vr~~aL~~L~~i~~~~p~~~----~-~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~---~-----iv~eL~~~l  394 (618)
T 1w63_A          328 NIRYVALTSLLKTVQTDHNAV----Q-RHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIR---G-----MMKELLYFL  394 (618)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHH----G-GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTH---H-----HHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhhCHHHH----H-HHHHHHHHHccCCChhHHHHHHHHHHHHcccccHH---H-----HHHHHHHHH
Confidence            888888888888876444322    1 24567788888888889999999998888754421   1     345566666


Q ss_pred             CCCCHHHHHHHHHHHHHHHH
Q 009568          424 VCPDPRIVTVCLEGLENILK  443 (532)
Q Consensus       424 ~~~d~~v~~~al~~L~~l~~  443 (532)
                      .+.|.+++..++.+|..+..
T Consensus       395 ~~~d~e~r~~~v~~I~~la~  414 (618)
T 1w63_A          395 DSCEPEFKADCASGIFLAAE  414 (618)
T ss_dssp             HHCCHHHHHHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHHHH
Confidence            66777777777777776655

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.50  E-value=4e-13  Score=153.01  Aligned_cols=398  Identities=12%  Similarity=0.110  Sum_probs=260.4

Q ss_pred             cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCc----hhHhhhCCcHHHHHHhhcC-CCCHHHHHHHHHHHHHHhcCC
Q 009568           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPP----IEEVIQSGVVPRFVEFLMR-EDYPQLQFEAAWALTNIASGT  149 (532)
Q Consensus        75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~----~~~~i~~g~i~~Lv~lL~~-~~~~~~~~~a~~~L~~l~~~~  149 (532)
                      .++.++..+.++++.+|..|+.++..++..-....    ...-....++|.|+..+.+ ++ +.++..|+.+|..++...
T Consensus        87 i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~-~~~~~~al~~l~~~~~~~  165 (1230)
T 1u6g_C           87 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED-VSVQLEALDIMADMLSRQ  165 (1230)
T ss_dssp             HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSC-HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHh
Confidence            46777888888888889889999988876431110    1111234589999999984 65 899999999999998521


Q ss_pred             hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhh
Q 009568          150 SENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSN  229 (532)
Q Consensus       150 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~  229 (532)
                      ........ ..+++.|+..|.+++..+|..|+.+|+.++...+.   .+ -...++.++..+....+..++..++.++..
T Consensus       166 ~~~l~~~~-~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~  240 (1230)
T 1u6g_C          166 GGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAA  240 (1230)
T ss_dssp             CSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHH
T ss_pred             HhHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence            11100000 23467788888888899999999999999865432   11 223577788877544344667778888888


Q ss_pred             ccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCC------------
Q 009568          230 FCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH------------  297 (532)
Q Consensus       230 L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~------------  297 (532)
                      ++...+..-......++|.+...+.+++++++..+++++..++..........+ ..+++.++..+..            
T Consensus       241 l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~~~d~~~  319 (1230)
T 1u6g_C          241 ISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDED  319 (1230)
T ss_dssp             HHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC-----------
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCCcccccc
Confidence            876543222234578999999999988999999999999988865443222222 1345555544421            


Q ss_pred             -------------------------CCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHH
Q 009568          298 -------------------------PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWT  352 (532)
Q Consensus       298 -------------------------~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~  352 (532)
                                               ..+.++..|+.+++.++...+.....++ ..+++.+...+.+. ++.+|..++.+
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~-~~~Vr~~a~~~  397 (1230)
T 1u6g_C          320 ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKER-EENVKADVFHA  397 (1230)
T ss_dssp             -------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHHHH
T ss_pred             cccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCC-chHHHHHHHHH
Confidence                                     1245688899999999875543333333 36788888888777 88999999998


Q ss_pred             HHHHhc--CC-----------------HHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc
Q 009568          353 ISNITA--GN-----------------RDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVRE  413 (532)
Q Consensus       353 L~nl~~--~~-----------------~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~  413 (532)
                      +..++.  +.                 ......++ ..+++.+...+.+.++.+|..++.+|+.++.........++  .
T Consensus       398 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l--~  474 (1230)
T 1u6g_C          398 YLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV-PNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI--P  474 (1230)
T ss_dssp             HHHHHHHHCCC------------CCCHHHHHHHHT-THHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH--H
T ss_pred             HHHHHHHhccccccccCccccccccchHHHHHHHh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHH--H
Confidence            887764  11                 11222222 23567777778888999999999999988765321111111  2


Q ss_pred             CChHHHHhhcCCCCH--HHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHH
Q 009568          414 GCIKPLCDLFVCPDP--RIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVK  491 (532)
Q Consensus       414 ~~l~~L~~lL~~~d~--~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~  491 (532)
                      .+++.+...|.++.+  .++..++..+..++......        ...+|..     ..++.+.....+++..|...|..
T Consensus       475 ~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~--------~~~~~l~-----~llp~L~~~l~d~~~~v~~~al~  541 (1230)
T 1u6g_C          475 VLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQ--------VFHPHVQ-----ALVPPVVACVGDPFYKITSEALL  541 (1230)
T ss_dssp             HHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGG--------GGHHHHT-----TTHHHHHHHHTCSSHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHH--------HHHhHHH-----HHHHHHHHHHcccchHHHHHHHH
Confidence            367888888887654  88888888888887532111        1112222     33555656666777777666655


Q ss_pred             HHHHhC
Q 009568          492 ILETYW  497 (532)
Q Consensus       492 il~~~~  497 (532)
                      .+..+.
T Consensus       542 ~l~~l~  547 (1230)
T 1u6g_C          542 VTQQLV  547 (1230)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555443

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.46  E-value=5.6e-12  Score=112.47  Aligned_cols=184  Identities=22%  Similarity=0.227  Sum_probs=157.6

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCc
Q 009568          160 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF  239 (532)
Q Consensus       160 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~  239 (532)
                      +..+.++++|.++++.++..|+++|+.+..           ...++.|+..+ .+.++.++..++++|..+..       
T Consensus        14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~~L~~~~~-------   74 (201)
T 3ltj_A           14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD-------   74 (201)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-------
T ss_pred             cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC-------
Confidence            456889999999999999999999998842           13578899999 67889999999999998853       


Q ss_pred             ccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcc
Q 009568          240 DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDF  319 (532)
Q Consensus       240 ~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~  319 (532)
                         ...++.|..++.++++.++..++++|+.+..           ...++.|+.++.++++.++..|+++|+.+..    
T Consensus        75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----  136 (201)
T 3ltj_A           75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----  136 (201)
T ss_dssp             ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred             ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence               2678999999999999999999999998753           2467889999999999999999999999853    


Q ss_pred             hhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhh
Q 009568          320 QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNAT  399 (532)
Q Consensus       320 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~  399 (532)
                             ...++.|..++.++ ++.+|..|+++|+.+.  .+.         .++.|..++.++++.+|..|..+|.++-
T Consensus       137 -------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~--~~~---------~~~~L~~~l~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          137 -------ERAVEPLIKALKDE-DGWVRQSAADALGEIG--GER---------VRAAMEKLAETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             -------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC--SHH---------HHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred             -------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC--chh---------HHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence                   25678899999988 9999999999999993  333         4677888889999999999999999874

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.45  E-value=2.2e-12  Score=116.04  Aligned_cols=187  Identities=21%  Similarity=0.189  Sum_probs=158.5

Q ss_pred             CCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH
Q 009568          116 SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR  195 (532)
Q Consensus       116 ~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~  195 (532)
                      .+.++.|+++|.+++ +.++..|+++|+.+..           ..+++.|+.+|.++++.++..++++|+.+..      
T Consensus        18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------   79 (211)
T ss_dssp             GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred             HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence            457999999999888 9999999999998764           2568999999999999999999999999842      


Q ss_pred             HHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCC
Q 009568          196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT  275 (532)
Q Consensus       196 ~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~  275 (532)
                           .+.++.|+..+ .+.++.++..++++|..+..          ...++.|..++.++++.++..++++|+.+..  
T Consensus        80 -----~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--  141 (211)
T 3ltm_A           80 -----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--  141 (211)
T ss_dssp             -----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred             -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence                 23578888888 77889999999999999864          3578999999999999999999999999853  


Q ss_pred             hhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHH
Q 009568          276 NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN  355 (532)
Q Consensus       276 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n  355 (532)
                               ...++.|..++.++++.++..|+.+|+.+..           ..+++.|..++.++ ++.||..|..+|.+
T Consensus       142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~  200 (211)
T 3ltm_A          142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG-TGFARKVAVNYLET  200 (211)
T ss_dssp             ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHC
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence                     2468889999999999999999999999853           24567888999888 99999999999999


Q ss_pred             HhcC
Q 009568          356 ITAG  359 (532)
Q Consensus       356 l~~~  359 (532)
                      +...
T Consensus       201 ~~~~  204 (211)
T 3ltm_A          201 HKSF  204 (211)
T ss_dssp             ----
T ss_pred             cCCC
Confidence            9764

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.45  E-value=2.5e-12  Score=115.70  Aligned_cols=188  Identities=22%  Similarity=0.216  Sum_probs=157.8

Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCC
Q 009568          159 HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP  238 (532)
Q Consensus       159 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~  238 (532)
                      .+.++.|+..|.++++.++..++++|+.+..           ...++.|+.++ .+.++.++..++++|..+..      
T Consensus        18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD------   79 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSCHHHHHHHHHHHHHHCC------
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC------
Confidence            3568999999999999999999999998843           23578899998 67789999999999999863      


Q ss_pred             cccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCc
Q 009568          239 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD  318 (532)
Q Consensus       239 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~  318 (532)
                          ...++.|..++.++++.++..++++|+.+..           .+.++.|+.++.++++.++..|+.+|+.+..   
T Consensus        80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---  141 (211)
T 3ltm_A           80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---  141 (211)
T ss_dssp             ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---
Confidence                3678999999999999999999999998853           2568899999999999999999999999853   


Q ss_pred             chhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009568          319 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNA  398 (532)
Q Consensus       319 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl  398 (532)
                              ...++.|..++.++ ++.+|..|+++|+.+..  +.         .++.|..++.++++.||..|..+|.++
T Consensus       142 --------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~--~~---------~~~~L~~~l~d~~~~vr~~A~~aL~~~  201 (211)
T 3ltm_A          142 --------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG--ER---------VRAAMEKLAETGTGFARKVAVNYLETH  201 (211)
T ss_dssp             --------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS--HH---------HHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred             --------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc--hh---------HHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence                    24678899999888 99999999999999943  22         467788889999999999999999998


Q ss_pred             hcCC
Q 009568          399 TSGG  402 (532)
Q Consensus       399 ~~~~  402 (532)
                      ....
T Consensus       202 ~~~~  205 (211)
T 3ltm_A          202 KSFN  205 (211)
T ss_dssp             ----
T ss_pred             CCCC
Confidence            7653

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.42  E-value=3.8e-12  Score=113.58  Aligned_cols=186  Identities=22%  Similarity=0.204  Sum_probs=159.2

Q ss_pred             hCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh
Q 009568          115 QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC  194 (532)
Q Consensus       115 ~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~  194 (532)
                      ..+..+.++++|.+++ +.++..|+++|+.+..           .+.++.|+.+|.++++.++..++++|+.+..  +  
T Consensus        12 ~~~~~~~~i~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--~--   75 (201)
T 3ltj_A           12 DPEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--E--   75 (201)
T ss_dssp             CHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G--
T ss_pred             CCcchHHHHHHhcCCC-HHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--H--
Confidence            3457899999999998 9999999999998764           2468999999999999999999999999842  1  


Q ss_pred             HHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 009568          195 RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG  274 (532)
Q Consensus       195 ~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~  274 (532)
                             ..++.|+..+ .+.++.++..++++|..+..          ...++.|..++.++++.++..++++|+.+.. 
T Consensus        76 -------~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-  136 (201)
T 3ltj_A           76 -------RAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-  136 (201)
T ss_dssp             -------GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-
T ss_pred             -------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-
Confidence                   3578888888 67889999999999999764          3578999999999999999999999998853 


Q ss_pred             ChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHH
Q 009568          275 TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTIS  354 (532)
Q Consensus       275 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~  354 (532)
                                ...++.|..++.++++.++..|+.+|+.+..  +         ..++.|..++.++ ++.+|..|.++|+
T Consensus       137 ----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~-~~~vr~~A~~aL~  194 (201)
T 3ltj_A          137 ----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETG-TGFARKVAVNYLE  194 (201)
T ss_dssp             ----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHC-CHHHHHHHHHHHH
T ss_pred             ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence                      2578889999999999999999999999842  1         3577888899888 9999999999999


Q ss_pred             HHh
Q 009568          355 NIT  357 (532)
Q Consensus       355 nl~  357 (532)
                      ++.
T Consensus       195 ~l~  197 (201)
T 3ltj_A          195 THK  197 (201)
T ss_dssp             HCC
T ss_pred             HHH
Confidence            874

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.39  E-value=8.3e-11  Score=122.87  Aligned_cols=328  Identities=13%  Similarity=0.107  Sum_probs=230.6

Q ss_pred             ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (532)
Q Consensus        74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  153 (532)
                      .....+++.+.+++...+..+.-.+..++..  ++.  .++-  +++.+.+=|++++ +.++..|+.+|+++..  ++..
T Consensus        74 ~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~--~~e--~~~L--~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e~~  144 (621)
T 2vgl_A           74 FGHMEAVNLLSSNRYTEKQIGYLFISVLVNS--NSE--LIRL--INNAIKNDLASRN-PTFMGLALHCIANVGS--REMA  144 (621)
T ss_dssp             SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCC--CHH--HHHH--HHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HHHH
T ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHHHHHccC--CcH--HHHH--HHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HHHH
Confidence            3578899999999999999888888888754  222  1111  4677888888888 9999999999999975  5544


Q ss_pred             HHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhcc
Q 009568          154 KVVIDHGAVPIFVKLL--ASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFC  231 (532)
Q Consensus       154 ~~i~~~g~i~~L~~lL--~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~  231 (532)
                      ..     +++.+.++|  .+.++.+|..|+.++.++....|..   +...+.++.+..+| .+.++.++..++.++..++
T Consensus       145 ~~-----l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~  215 (621)
T 2vgl_A          145 EA-----FAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLL-NDQHLGVVTAATSLITTLA  215 (621)
T ss_dssp             HH-----HTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHH
T ss_pred             HH-----HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHh-CCCCccHHHHHHHHHHHHH
Confidence            43     458889999  8899999999999999998755542   22247888999998 7788999999999999998


Q ss_pred             CCCCCCCcccccchHHHHHH----hhcCC-------------CHHHHHHHHHHHHHhccCC-hhHHHHHHHhCchHHHHH
Q 009568          232 RGKPQPPFDQVRPALPALAQ----LVHSN-------------DEEVLTDACWALSYLSDGT-NDKIQAVIEAGVCPRLVE  293 (532)
Q Consensus       232 ~~~~~~~~~~~~~~l~~L~~----lL~~~-------------d~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~  293 (532)
                      ...+.    .....+|.+++    ++...             ++..+...+..+..++... ++....+.+  ++..++.
T Consensus       216 ~~~~~----~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~  289 (621)
T 2vgl_A          216 QKNPE----EFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILN  289 (621)
T ss_dssp             HHCHH----HHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHH
T ss_pred             HhChH----HHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHH
Confidence            76432    22344554444    43221             6889999999999888643 333332322  3444443


Q ss_pred             hhC---------CCCc--cchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH
Q 009568          294 LLG---------HPSP--SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD  362 (532)
Q Consensus       294 lL~---------~~~~--~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~  362 (532)
                      .+.         +.+.  .+...|++++..+.. .+..    +. .++..|..+|.++ ++.+|..|+.+|..++...+.
T Consensus       290 ~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~----~~-~~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~  362 (621)
T 2vgl_A          290 KAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNL----LV-RACNQLGQFLQHR-ETNLRYLALESMCTLASSEFS  362 (621)
T ss_dssp             HHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHH----HH-HHHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTT
T ss_pred             hhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHH----HH-HHHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCc
Confidence            321         1122  677888888888752 2211    11 4567788888877 899999999999999875432


Q ss_pred             HHHHHHHcCCHHHHHHHHh-cCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHH
Q 009568          363 QIQAVIDAGLVGPLVNLLQ-NAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENI  441 (532)
Q Consensus       363 ~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l  441 (532)
                       . ..+ ....+.++..+. ++|..+|..++..|..++..   .....     ++..|...+...|.+++..++.++..+
T Consensus       363 -~-~~~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~---~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~l  431 (621)
T 2vgl_A          363 -H-EAV-KTHIETVINALKTERDVSVRQRAVDLLYAMCDR---SNAQQ-----IVAEMLSYLETADYSIREEIVLKVAIL  431 (621)
T ss_dssp             -H-HHH-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH---HHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             -H-HHH-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh---hhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence             1 122 235677888888 88999999999999999753   33333     455666666667777776666666555


Q ss_pred             HH
Q 009568          442 LK  443 (532)
Q Consensus       442 ~~  443 (532)
                      ..
T Consensus       432 a~  433 (621)
T 2vgl_A          432 AE  433 (621)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.29  E-value=4.4e-09  Score=109.88  Aligned_cols=320  Identities=15%  Similarity=0.114  Sum_probs=219.6

Q ss_pred             ChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHH
Q 009568           87 DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV  166 (532)
Q Consensus        87 ~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~  166 (532)
                      +...+..++..+.-+.... .+.      ..+.+..++++.+++ ...+..+.-.+..++..+++....+     ++.+.
T Consensus        51 ~~~~k~~~l~Kli~l~~~G-~d~------s~~~~~vvkl~~s~~-~~~Krl~YL~l~~~~~~~~e~~~L~-----iN~l~  117 (621)
T 2vgl_A           51 DGYSKKKYVCKLLFIFLLG-HDI------DFGHMEAVNLLSSNR-YTEKQIGYLFISVLVNSNSELIRLI-----NNAIK  117 (621)
T ss_dssp             CHHHHHHHHHHHHHHHHHS-CCC------CSCHHHHHHGGGCSC-HHHHHHHHHHHHHSCCCCHHHHHHH-----HHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcC-CCC------chhHHHHHHHhcCCC-HHHHHHHHHHHHHHccCCcHHHHHH-----HHHHH
Confidence            5556666665555444322 111      236778888999988 8999999999999998777654332     57788


Q ss_pred             HhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhh-hhhhhHHHHHHHHHhhhccCCCCCCCcccccch
Q 009568          167 KLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN-ERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPA  245 (532)
Q Consensus       167 ~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~  245 (532)
                      +-|.++++.++..|+.+|+++..  +..-+     ..++.+.+++. .+.++.+++.|+.++..+.+..|.  .....+.
T Consensus       118 kDl~~~n~~ir~lALr~L~~i~~--~e~~~-----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~--~~~~~~~  188 (621)
T 2vgl_A          118 NDLASRNPTFMGLALHCIANVGS--REMAE-----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD--LVPMGDW  188 (621)
T ss_dssp             HHHHSCCHHHHHHHHHHHHHHCC--HHHHH-----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG--GCCCCSC
T ss_pred             HhcCCCCHHHHHHHHHHhhccCC--HHHHH-----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh--hcCchhH
Confidence            88889999999999999999943  33222     24677777773 466899999999999999986432  1112478


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCC-------------CccchhhHHHHHHH
Q 009568          246 LPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP-------------SPSVLIPALRTVGN  312 (532)
Q Consensus       246 l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-------------~~~v~~~al~~L~n  312 (532)
                      ++.+..+|.+.|+.|+..++.++..++...+......+. .++..|..++..+             ++-.+...+++++.
T Consensus       189 ~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~-~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~  267 (621)
T 2vgl_A          189 TSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVS-LAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQC  267 (621)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHH-HHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGG
T ss_pred             HHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHH-HHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHH
Confidence            899999999999999999999999998665542221111 2333343444221             45577778888888


Q ss_pred             hhcCCc-chhHHHhhcCchHHHHHHhc---------CCCch--hHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH
Q 009568          313 IVTGDD-FQTQCIITYGALPYLLGLLT---------HSHKK--SIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLL  380 (532)
Q Consensus       313 l~~~~~-~~~~~~~~~~~l~~L~~lL~---------~~~~~--~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll  380 (532)
                      ++...+ .....+.+  +++.++..+.         +. +.  .|..+|+.++..+. ..++....     ++..|..++
T Consensus       268 ~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~-n~~~aVl~ea~~~i~~l~-~~~~~~~~-----~~~~L~~~L  338 (621)
T 2vgl_A          268 YPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHS-NAKNAVLFEAISLIIHHD-SEPNLLVR-----ACNQLGQFL  338 (621)
T ss_dssp             SSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHH-HHHHHHHHHHHHHHHHHC-CCHHHHHH-----HHHHHHHHS
T ss_pred             hCCCCCHHHHHHHHH--HHHHHHHhhccCccccccccc-chHHHHHHHHHHHHHhcC-CcHHHHHH-----HHHHHHHHh
Confidence            775432 23322222  3333333221         22 22  78888999998886 33443332     456788888


Q ss_pred             hcCchhHHHHHHHHHHHhhcCCC-HHHHHHHHHcCChHHHHhhcC-CCCHHHHHHHHHHHHHHHH
Q 009568          381 QNAEFDIKKEAAWAISNATSGGT-HEQIKYLVREGCIKPLCDLFV-CPDPRIVTVCLEGLENILK  443 (532)
Q Consensus       381 ~~~~~~v~~~a~~aL~nl~~~~~-~~~~~~l~~~~~l~~L~~lL~-~~d~~v~~~al~~L~~l~~  443 (532)
                      .+.++.+|..|+.+|..++.... ...    + ......++.+|+ ++|..++..+++.|..+..
T Consensus       339 ~~~~~niry~aL~~l~~l~~~~~~~~~----~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~  398 (621)
T 2vgl_A          339 QHRETNLRYLALESMCTLASSEFSHEA----V-KTHIETVINALKTERDVSVRQRAVDLLYAMCD  398 (621)
T ss_dssp             SCSCHHHHHHHHHHHHHHTTCTTTHHH----H-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC
T ss_pred             cCCCcchHHHHHHHHHHHHhccCcHHH----H-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC
Confidence            88899999999999999987642 121    2 246778888888 9999999999999888864

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=99.15  E-value=2.1e-09  Score=113.62  Aligned_cols=273  Identities=14%  Similarity=0.145  Sum_probs=193.0

Q ss_pred             cHHHHHhhhc---CCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCC-------CHHHHHHHHHHHHH
Q 009568           75 SLPAMVAGVW---SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-------YPQLQFEAAWALTN  144 (532)
Q Consensus        75 ~l~~lv~~L~---s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~-------~~~~~~~a~~~L~~  144 (532)
                      .+..+-..|.   ++++.++.-|+..|.-+-.+..    .     .++..|...|.+++       .+.++..|+..|+-
T Consensus       393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~----~-----~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl  463 (963)
T 4ady_A          393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG----R-----DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL  463 (963)
T ss_dssp             HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT----H-----HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc----H-----HHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence            4555555665   5677788888888888876531    1     14667777776543       36789999999999


Q ss_pred             HhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHH
Q 009568          145 IASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNAT  224 (532)
Q Consensus       145 l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~  224 (532)
                      +..|+...       .+++.|...|.+.+..+++.|+.+|+.+-.++.. .+      ++..|+..+..+.+..+++.++
T Consensus       464 a~~GS~~e-------ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn-~~------ai~~LL~~~~e~~~e~vrR~aa  529 (963)
T 4ady_A          464 AAMGSANI-------EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK-PE------AIHDMFTYSQETQHGNITRGLA  529 (963)
T ss_dssp             HSTTCCCH-------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC-HH------HHHHHHHHHHHCSCHHHHHHHH
T ss_pred             HhcCCCCH-------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC-HH------HHHHHHHHHhccCcHHHHHHHH
Confidence            87654321       2357778888777777888999999987433221 11      3566777665566778999999


Q ss_pred             HHhhhccCCCCCCCcccccchHHHHHHhhc-CCCHHHHHHHHHHHHHhc--cCChhHHHHHHHhCchHHHHHhh-CCCCc
Q 009568          225 WTLSNFCRGKPQPPFDQVRPALPALAQLVH-SNDEEVLTDACWALSYLS--DGTNDKIQAVIEAGVCPRLVELL-GHPSP  300 (532)
Q Consensus       225 ~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~l~--~~~~~~~~~~~~~~~l~~L~~lL-~~~~~  300 (532)
                      .+|..+..+.        ...++.++..|. +.++-++..++.+++.-.  .++..         .++.|++.+ .+.+.
T Consensus       530 lgLGll~~g~--------~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~---------aIq~LL~~~~~d~~d  592 (963)
T 4ady_A          530 VGLALINYGR--------QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS---------AVKRLLHVAVSDSND  592 (963)
T ss_dssp             HHHHHHTTTC--------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH---------HHHHHHHHHHHCSCH
T ss_pred             HHHHhhhCCC--------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH---------HHHHHHHHhccCCcH
Confidence            9999887654        245566776665 568888888888776443  33333         344444443 45677


Q ss_pred             cchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH
Q 009568          301 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLL  380 (532)
Q Consensus       301 ~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll  380 (532)
                      .++..|+.+||.+..+.++         .++.++.+|.+..++.+|..|+++|+.++.+++..       .++..|..++
T Consensus       593 ~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~-------~aid~L~~L~  656 (963)
T 4ady_A          593 DVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ-------SAIDVLDPLT  656 (963)
T ss_dssp             HHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH-------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH-------HHHHHHHHHc
Confidence            8999999999999887652         34556665544449999999999999999876531       1456777888


Q ss_pred             hcCchhHHHHHHHHHHHhhcCCC
Q 009568          381 QNAEFDIKKEAAWAISNATSGGT  403 (532)
Q Consensus       381 ~~~~~~v~~~a~~aL~nl~~~~~  403 (532)
                      .+.+..||..|+.+|+.+..+.+
T Consensus       657 ~D~d~~Vrq~Ai~ALG~Ig~gtn  679 (963)
T 4ady_A          657 KDPVDFVRQAAMIALSMILIQQT  679 (963)
T ss_dssp             TCSSHHHHHHHHHHHHHHSTTCC
T ss_pred             cCCCHHHHHHHHHHHHHHhcCCc
Confidence            88899999999999999987654

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.13  E-value=7.8e-10  Score=117.08  Aligned_cols=214  Identities=16%  Similarity=0.106  Sum_probs=156.7

Q ss_pred             cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCC-CchhH
Q 009568          118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV-KLLASPSDDVREQAVWALGNVAGD-SPRCR  195 (532)
Q Consensus       118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~-~lL~~~~~~v~~~a~~~L~nl~~~-~~~~~  195 (532)
                      ++| +++.|++++ +..|..|+++|++|+. ++..+..+...|++..++ .+|.+++.+++..|+++|.||+.+ ++..+
T Consensus        36 i~P-ll~~L~S~~-~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~  112 (684)
T 4gmo_A           36 ILP-VLKDLKSPD-AKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC  112 (684)
T ss_dssp             THH-HHHHHSSSC-CSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             HHH-HHHHcCCCC-HHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence            455 556789988 8999999999999997 788888999999887765 578889999999999999999954 56788


Q ss_pred             HHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCC
Q 009568          196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT  275 (532)
Q Consensus       196 ~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~  275 (532)
                      ..+...|++++|..++.+ ..        ..+..+........ ......+           ..+...++.+|.+++..+
T Consensus       113 ~~l~~~~il~~L~~~l~~-~~--------~~~~~~~~~~~~~~-~~~~~~~-----------~~~~~~~l~lL~~L~e~s  171 (684)
T 4gmo_A          113 VHLYRLDVLTAIEHAAKA-VL--------ETLTTSEPPFSKLL-KAQQRLV-----------WDITGSLLVLIGLLALAR  171 (684)
T ss_dssp             HHHHHTTHHHHHHHHHHH-HH--------HHHHCBTTBGGGSC-HHHHHHH-----------HHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHcChHHHHHHHHHh-hH--------HHHhhhcccccccc-HHHHHHH-----------HHHHHHHHHHHHHHHhCC
Confidence            889999999999999832 21        12222221110000 0001111           124456777888888888


Q ss_pred             hhHHHHHHHhCchHHHHHhhCCC---CccchhhHHHHHHHhhcCCcchhHHHhhcCchHH---HHHHhcCCCchhHHHHH
Q 009568          276 NDKIQAVIEAGVCPRLVELLGHP---SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPY---LLGLLTHSHKKSIKKEA  349 (532)
Q Consensus       276 ~~~~~~~~~~~~l~~L~~lL~~~---~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~---L~~lL~~~~~~~v~~~a  349 (532)
                      ++....+...+.++.|+.+|.+.   ...++..|+.+|.+++..++...+.+.+.+....   +..+.++  +...+..+
T Consensus       172 ~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~--~~~~~~la  249 (684)
T 4gmo_A          172 DEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG--TDPRAVMA  249 (684)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS--SCTTHHHH
T ss_pred             HHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC--CcHHHHHH
Confidence            88778888889999999988442   3568999999999999999888888877765433   3333333  44568889


Q ss_pred             HHHHHHHh
Q 009568          350 CWTISNIT  357 (532)
Q Consensus       350 ~~~L~nl~  357 (532)
                      |++|.|+.
T Consensus       250 ~giL~Ni~  257 (684)
T 4gmo_A          250 CGVLHNVF  257 (684)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhHh
Confidence            99999975

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.07  E-value=1e-08  Score=84.67  Aligned_cols=218  Identities=15%  Similarity=0.192  Sum_probs=174.6

Q ss_pred             hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCC
Q 009568          158 DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP  237 (532)
Q Consensus       158 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~  237 (532)
                      +..++..++.+|.+.-+.++.+|+..+.+++..-+...+.+     +..|+.++.++....+......+++.++...|  
T Consensus        30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P--  102 (253)
T 2db0_A           30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP--  102 (253)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH--
T ss_pred             hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCH--
Confidence            44567889999998889999999999999998877755443     56777788778888888888889999887643  


Q ss_pred             CcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCC
Q 009568          238 PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGD  317 (532)
Q Consensus       238 ~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~  317 (532)
                        ..+.+.+|.+..-..-.|+.++....++|..++..++....     +++..+..++.+++..-+..|+..++.+....
T Consensus       103 --e~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~  175 (253)
T 2db0_A          103 --ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENS  175 (253)
T ss_dssp             --HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT
T ss_pred             --HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccC
Confidence              45678888888888888999999999999999987776544     66778999999988777888888888777644


Q ss_pred             cchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHH
Q 009568          318 DFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISN  397 (532)
Q Consensus       318 ~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~n  397 (532)
                      .   +++  .-.+|.|..+|.+. +.-||..|..+|.+++..++... .++     ..-+.-+.+.+..+++....+|+.
T Consensus       176 ~---~yv--~PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklR-kii-----~~kl~e~~D~S~lv~~~V~egL~r  243 (253)
T 2db0_A          176 F---KYV--NPFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLR-KVV-----IKRLEELNDTSSLVNKTVKEGISR  243 (253)
T ss_dssp             H---HHH--GGGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHH-HHH-----HHHHHHCCCSCHHHHHHHHHHHHH
T ss_pred             c---ccc--CcchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHH-HHH-----HHHHHHhcCcHHHHHHHHHHHHHH
Confidence            3   222  25789999999998 99999999999999999888743 332     234555777788899999999988


Q ss_pred             hhcC
Q 009568          398 ATSG  401 (532)
Q Consensus       398 l~~~  401 (532)
                      ++.-
T Consensus       244 l~l~  247 (253)
T 2db0_A          244 LLLL  247 (253)
T ss_dssp             HHHC
T ss_pred             HHHH
Confidence            8653

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=99.04  E-value=5.8e-09  Score=90.13  Aligned_cols=226  Identities=17%  Similarity=0.159  Sum_probs=174.3

Q ss_pred             cchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhH
Q 009568          243 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQ  322 (532)
Q Consensus       243 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~  322 (532)
                      ...+..|..++...|+.++..++.+|..+....++......-..+++.++.++.+.+..+...|++||+.+..+.+-.-.
T Consensus        32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence            45678899999999999999999999999877555555555558999999999999999999999999999998774333


Q ss_pred             HHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCC
Q 009568          323 CIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGG  402 (532)
Q Consensus       323 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~  402 (532)
                      .+.  .+...+..+++++ ++-++.+|+-.++-+--.++.       ..++..+..++.+.+++++..+..++.+++...
T Consensus       112 ~y~--Kl~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S  181 (265)
T 3b2a_A          112 TFL--KAAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDS-------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSS  181 (265)
T ss_dssp             HHH--HHHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred             HHH--HHHHHHHHHhcCC-CchHHHHHHHHhCcCCcccch-------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence            222  3567888888877 999999999999998432211       125567888888899999999999999998753


Q ss_pred             -CHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHh-cC
Q 009568          403 -THEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQ-SH  480 (532)
Q Consensus       403 -~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~-~~  480 (532)
                       +++..     .+++.-+-++|+++|+.++..++.++..++...-...       ....+      .+....+..|. -.
T Consensus       182 ~D~~i~-----~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~-------~~~~~------~~~~~~v~~l~~~~  243 (265)
T 3b2a_A          182 ADSGHL-----TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLEN-------VKIEL------LKISRIVDGLVYRE  243 (265)
T ss_dssp             SSCCCG-----GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSC-------CHHHH------HHHHHHHHHGGGCS
T ss_pred             CCHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHh-------HHHHH------HHHHHHHHHHHHhc
Confidence             22221     2478888899999999999999999999987632211       11112      23456777887 67


Q ss_pred             CCHHHHHHHHHHHHHh
Q 009568          481 DNNEIYEKAVKILETY  496 (532)
Q Consensus       481 ~~~~v~~~a~~il~~~  496 (532)
                      ..|.+..+|..+-+.+
T Consensus       244 ~~~~~~~ka~~v~~~l  259 (265)
T 3b2a_A          244 GAPIIRLKAKKVSDLI  259 (265)
T ss_dssp             SCHHHHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHHH
Confidence            8899999998877654

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=99.02  E-value=1.7e-08  Score=96.09  Aligned_cols=277  Identities=14%  Similarity=0.063  Sum_probs=167.6

Q ss_pred             cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (532)
Q Consensus        75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  154 (532)
                      .+..+++.+.++|...+....-.+..+.... ..    ++  =+++.|.+=+++++ +-++-.|+++|++|..  ++..+
T Consensus        69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~-~e----~i--Lv~Nsl~kDl~~~N-~~iR~lALRtL~~I~~--~~m~~  138 (355)
T 3tjz_B           69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA-ED----VI--IVTSSLTKDMTGKE-DSYRGPAVRALCQITD--STMLQ  138 (355)
T ss_dssp             HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS-SC----GG--GGHHHHHHHHHSSC-HHHHHHHHHHHHHHCC--TTTHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH-HH----HH--HHHHHHHhhcCCCc-HhHHHHHHHHHhcCCC--HHHHH
Confidence            5678899999999999998888888776531 11    22  16788899999988 9999999999999987  44444


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC
Q 009568          155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  234 (532)
Q Consensus       155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~  234 (532)
                      .+     .+.+.+.|.+.++-||..|+.+..++....|+..     .+++..+-.++ .+.++.++.+++.+|..++..+
T Consensus       139 ~l-----~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~d  207 (355)
T 3tjz_B          139 AI-----ERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKND  207 (355)
T ss_dssp             HH-----HHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTTC
T ss_pred             HH-----HHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhhc
Confidence            33     4778889999999999999999999988777632     25788888888 7778889999999999998753


Q ss_pred             CCCCcccccchHHHHHHhhcCC---CHHHHHHHHHHHHHhccCC-hhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHH
Q 009568          235 PQPPFDQVRPALPALAQLVHSN---DEEVLTDACWALSYLSDGT-NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV  310 (532)
Q Consensus       235 ~~~~~~~~~~~l~~L~~lL~~~---d~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L  310 (532)
                              ...+..++..+...   ++..+...+..+..++..+ +.     ....+++.+..+|++.++.|...|++++
T Consensus       208 --------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~~aVvyEa~k~I  274 (355)
T 3tjz_B          208 --------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKHEMVVYEAASAI  274 (355)
T ss_dssp             --------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHH
T ss_pred             --------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence                    22444555544432   5666666666665655443 21     2236788888999999999999999999


Q ss_pred             HHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHH
Q 009568          311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKE  390 (532)
Q Consensus       311 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~  390 (532)
                      ..+...+..    .+ ..++..|..++.++ ++.+|..|+..|..+....|..++.     .-..+..++.+++..+...
T Consensus       275 ~~l~~~~~~----~~-~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t~  343 (355)
T 3tjz_B          275 VNLPGCSAK----EL-APAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAVTA-----CNLDLENLVTDANRSIATL  343 (355)
T ss_dssp             TC----------------CCCTHHHHHHSS-SSSSHHHHHHCC-------------------------------------
T ss_pred             HhccCCCHH----HH-HHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHHH
Confidence            887652221    11 24567788888888 9999999999999999877765433     2345667788888777766


Q ss_pred             HHHHHH
Q 009568          391 AAWAIS  396 (532)
Q Consensus       391 a~~aL~  396 (532)
                      |..+|.
T Consensus       344 Aittll  349 (355)
T 3tjz_B          344 AITTLL  349 (355)
T ss_dssp             ------
T ss_pred             HHHHhh
Confidence            665553

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.89  E-value=4.8e-08  Score=93.04  Aligned_cols=275  Identities=13%  Similarity=0.115  Sum_probs=161.2

Q ss_pred             cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q 009568          118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL  197 (532)
Q Consensus       118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~  197 (532)
                      +.+..++++.+++ ..++....-.+.+++...++.   +   =++..|.+=+.++++-+|-.|+++|++|....  .-+.
T Consensus        69 lf~~v~kl~~s~d-~~lKrLvYLyl~~~~~~~~e~---i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~--m~~~  139 (355)
T 3tjz_B           69 AFFAMTKLFQSND-PTLRRMCYLTIKEMSCIAEDV---I---IVTSSLTKDMTGKEDSYRGPAVRALCQITDST--MLQA  139 (355)
T ss_dssp             HHHHHHGGGGCCC-HHHHHHHHHHHHHHTTTSSCG---G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT--THHH
T ss_pred             HHHHHHHHhcCCC-HHHHHHHHHHHHHhCCCHHHH---H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH--HHHH
Confidence            5677889999998 899999998998888853332   1   24688888899999999999999999996433  1111


Q ss_pred             HHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChh
Q 009568          198 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTND  277 (532)
Q Consensus       198 ~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~  277 (532)
                           +.+.+.+.+ .+.++.+++.|+.+...|....|    ....+.++.+..++.+.++.++.+|+.++..+...+..
T Consensus       140 -----l~~~lk~~L-~d~~pyVRk~A~l~~~kL~~~~p----e~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~  209 (355)
T 3tjz_B          140 -----IERYMKQAI-VDKVPSVSSSALVSSLHLLKCSF----DVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL  209 (355)
T ss_dssp             -----HHHHHHHHH-TCSSHHHHHHHHHHHHHHTTTCH----HHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH
T ss_pred             -----HHHHHHHHc-CCCCHHHHHHHHHHHHHHhccCH----HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH
Confidence                 345556666 78899999999999999987643    23467888999999999999999999999998865432


Q ss_pred             HHHHHHHhCchHHHHHhhCCC---CccchhhHHHHHHHhhcCC-cchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHH
Q 009568          278 KIQAVIEAGVCPRLVELLGHP---SPSVLIPALRTVGNIVTGD-DFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI  353 (532)
Q Consensus       278 ~~~~~~~~~~l~~L~~lL~~~---~~~v~~~al~~L~nl~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L  353 (532)
                               .+..++..+...   ++-.+...+++++.++..+ +.     ....+++.+..+|++. ++.|..+|++++
T Consensus       210 ---------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~-~~aVvyEa~k~I  274 (355)
T 3tjz_B          210 ---------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNK-HEMVVYEAASAI  274 (355)
T ss_dssp             ---------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCS-SHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCC-ChHHHHHHHHHH
Confidence                     233344444332   2333344455555555443 21     2235677888889988 999999999999


Q ss_pred             HHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHH
Q 009568          354 SNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTV  433 (532)
Q Consensus       354 ~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~  433 (532)
                      ..+......    +. ..++..|..++.++++.+|-.|+..|..++.. .|....     .+-.-+..+++++|..+...
T Consensus       275 ~~l~~~~~~----~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~-~P~~v~-----~~n~~ie~li~d~n~sI~t~  343 (355)
T 3tjz_B          275 VNLPGCSAK----EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMK-HPSAVT-----ACNLDLENLVTDANRSIATL  343 (355)
T ss_dssp             TC----------------CCCTHHHHHHSSSSSSHHHHHHCC--------------------------------------
T ss_pred             HhccCCCHH----HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH-CcHHHH-----HHHHHHHHHccCCcHhHHHH
Confidence            998652222    12 22456777788889999999999999888775 333222     14456677888888877666


Q ss_pred             HHHH
Q 009568          434 CLEG  437 (532)
Q Consensus       434 al~~  437 (532)
                      |+..
T Consensus       344 Aitt  347 (355)
T 3tjz_B          344 AITT  347 (355)
T ss_dssp             ----
T ss_pred             HHHH
Confidence            5543

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.88  E-value=5e-09  Score=110.91  Aligned_cols=197  Identities=14%  Similarity=0.070  Sum_probs=147.7

Q ss_pred             chHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHH-HHhhCCCCccchhhHHHHHHHhhcCC-cchh
Q 009568          244 PALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL-VELLGHPSPSVLIPALRTVGNIVTGD-DFQT  321 (532)
Q Consensus       244 ~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L-~~lL~~~~~~v~~~al~~L~nl~~~~-~~~~  321 (532)
                      .++|. +..|+++++..+..||++|++++. ++.....+...+++..+ ..+|.+++..++..|+++|+||+... .+..
T Consensus        35 ~i~Pl-l~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~  112 (684)
T 4gmo_A           35 KILPV-LKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC  112 (684)
T ss_dssp             TTHHH-HHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             hHHHH-HHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence            44554 466899999999999999999996 45555777788888765 56789999999999999999999653 4566


Q ss_pred             HHHhhcCchHHHHHHhcCCC-------------c-------hhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHh
Q 009568          322 QCIITYGALPYLLGLLTHSH-------------K-------KSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQ  381 (532)
Q Consensus       322 ~~~~~~~~l~~L~~lL~~~~-------------~-------~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~  381 (532)
                      ..++..|+++.|..++....             .       ..+...++++|.+++.++.+....+...+.++.|+..+.
T Consensus       113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~  192 (684)
T 4gmo_A          113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI  192 (684)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence            78889999999999885310             0       123456788899999888888888888889999999885


Q ss_pred             cC---chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChH---HHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 009568          382 NA---EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIK---PLCDLFVCPDPRIVTVCLEGLENILKV  444 (532)
Q Consensus       382 ~~---~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~---~L~~lL~~~d~~v~~~al~~L~~l~~~  444 (532)
                      +.   ..+++..|+.+|.+++.. +.+....+.+.+...   .+..+.+..++ .+..+...|.|++..
T Consensus       193 ~~~~~~~~v~~~a~~~L~~ls~d-n~~~~~~i~~~~~~~~~~~ll~~~~~~~~-~~~la~giL~Ni~~~  259 (684)
T 4gmo_A          193 SADIAPQDIYEEAISCLTTLSED-NLKVGQAITDDQETHVYDVLLKLATGTDP-RAVMACGVLHNVFTS  259 (684)
T ss_dssp             HHCCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHTCCSSCHHHHHHHHHHSSCT-THHHHHHHHHHHHHH
T ss_pred             hcCCCcHHHHHHHHHHHHHHhcc-CHHHHHHHHhcchHHHHHHHHHHhcCCcH-HHHHHHHHHHhHhhh
Confidence            53   357999999999999987 556777777766533   33333333333 345567778887643

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.85  E-value=4.2e-07  Score=96.24  Aligned_cols=270  Identities=14%  Similarity=0.121  Sum_probs=187.5

Q ss_pred             cHHHHHHhhc---CCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCC--------HHHHHHHHHHHHH
Q 009568          118 VVPRFVEFLM---REDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPS--------DDVREQAVWALGN  186 (532)
Q Consensus       118 ~i~~Lv~lL~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~--------~~v~~~a~~~L~n  186 (532)
                      ++..|-+.|.   +++ +.++..|+.+|+-+..+...   .     ++..|...|.+.+        +.++..|+..||-
T Consensus       393 gl~~L~~yL~~~~s~~-~~ik~GAllaLGli~ag~~~---~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl  463 (963)
T 4ady_A          393 GKKVMAPYLPGSRASS-RFIKGGSLYGLGLIYAGFGR---D-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL  463 (963)
T ss_dssp             HHHHHTTTSTTSCCSC-HHHHHHHHHHHHHHTTTTTH---H-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCCc-HHHHHHHHHHHHHhcCCCcH---H-----HHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence            4666666775   444 89999999999999986543   1     3567777776544        6788889999998


Q ss_pred             hhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhh-cCCCHHHHHHHH
Q 009568          187 VAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLV-HSNDEEVLTDAC  265 (532)
Q Consensus       187 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~  265 (532)
                      +...+..  ..     ++..|...+ .+.+..+...++.+|..+.-+..  .    ..++..|+..+ .+.+..++..++
T Consensus       464 a~~GS~~--ee-----v~e~L~~~L-~dd~~~~~~~AalALGli~vGTg--n----~~ai~~LL~~~~e~~~e~vrR~aa  529 (963)
T 4ady_A          464 AAMGSAN--IE-----VYEALKEVL-YNDSATSGEAAALGMGLCMLGTG--K----PEAIHDMFTYSQETQHGNITRGLA  529 (963)
T ss_dssp             HSTTCCC--HH-----HHHHHHHHH-HTCCHHHHHHHHHHHHHHHTTCC--C----HHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred             HhcCCCC--HH-----HHHHHHHHH-hcCCHHHHHHHHHHHhhhhcccC--C----HHHHHHHHHHHhccCcHHHHHHHH
Confidence            7543321  11     356677777 33344556678888876643321  1    23445555544 355788999999


Q ss_pred             HHHHHhccCChhHHHHHHHhCchHHHHHhhC-CCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchh
Q 009568          266 WALSYLSDGTNDKIQAVIEAGVCPRLVELLG-HPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKS  344 (532)
Q Consensus       266 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~  344 (532)
                      .+|+.+..+.++.         ++.++..|. +.++.++..++.+++.-..+....       ..++.|+..+.+..+..
T Consensus       530 lgLGll~~g~~e~---------~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~~~~~d~~d~  593 (963)
T 4ady_A          530 VGLALINYGRQEL---------ADDLITKMLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLHVAVSDSNDD  593 (963)
T ss_dssp             HHHHHHTTTCGGG---------GHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHHHHHHCSCHH
T ss_pred             HHHHhhhCCChHH---------HHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHhccCCcHH
Confidence            9999887766644         455555554 567888998888888766655432       23444555543333788


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH-hcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhc
Q 009568          345 IKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLL-QNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLF  423 (532)
Q Consensus       345 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll-~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL  423 (532)
                      +|..|+.+|+.+..++++         .++.++..+ ++.++.+|..|++||+.++.+....        .+++.|..++
T Consensus       594 VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~--------~aid~L~~L~  656 (963)
T 4ady_A          594 VRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ--------SAIDVLDPLT  656 (963)
T ss_dssp             HHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH--------HHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH--------HHHHHHHHHc
Confidence            999999999999887653         456666644 5679999999999999998754321        2567777888


Q ss_pred             CCCCHHHHHHHHHHHHHHHH
Q 009568          424 VCPDPRIVTVCLEGLENILK  443 (532)
Q Consensus       424 ~~~d~~v~~~al~~L~~l~~  443 (532)
                      ++.|..|+..|+.+|..+..
T Consensus       657 ~D~d~~Vrq~Ai~ALG~Ig~  676 (963)
T 4ady_A          657 KDPVDFVRQAAMIALSMILI  676 (963)
T ss_dssp             TCSSHHHHHHHHHHHHHHST
T ss_pred             cCCCHHHHHHHHHHHHHHhc
Confidence            99999999999999998864

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.84  E-value=3.7e-07  Score=75.53  Aligned_cols=217  Identities=16%  Similarity=0.176  Sum_probs=166.9

Q ss_pred             hhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCc
Q 009568          114 IQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSP  192 (532)
Q Consensus       114 i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~  192 (532)
                      .+..++..++.+|.++- -.+|..|+.++..++..-++....++     ..|+.+++ ++...+......++|.++...|
T Consensus        29 ~d~~~l~~lI~~LDDDl-wtV~kNAl~vi~~i~~~~~el~epl~-----~kL~vm~~ksEaIpltqeIa~a~G~la~i~P  102 (253)
T 2db0_A           29 YDESVLKKLIELLDDDL-WTVVKNAISIIMVIAKTREDLYEPML-----KKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP  102 (253)
T ss_dssp             HCHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCGGGHHHHH-----HHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH
T ss_pred             hhHHHHHHHHHHhccHH-HHHHHhHHHHHHHHHHHhHHHHHHHH-----HHHHHHHhhcccCchHHHHHHHHhHHHHhCH
Confidence            34568889999999887 68999999999999997787766554     56666654 4667777778899999988777


Q ss_pred             hhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 009568          193 RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS  272 (532)
Q Consensus       193 ~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~  272 (532)
                      +.-+.     .++.+..-. .-.++.++-+..++|..+.+..|    ....+++.-+..++.++|..-+..++..++-+.
T Consensus       103 e~v~~-----vVp~lfany-rigd~kikIn~~yaLeeIaranP----~l~~~v~rdi~smltskd~~Dkl~aLnFi~alG  172 (253)
T 2db0_A          103 ELVKS-----MIPVLFANY-RIGDEKTKINVSYALEEIAKANP----MLMASIVRDFMSMLSSKNREDKLTALNFIEAMG  172 (253)
T ss_dssp             HHHHH-----HHHHHHHHS-CCCSHHHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCC
T ss_pred             HHHHh-----hHHHHHHHH-hcCCccceecHHHHHHHHHHhCh----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence            64222     245555444 34489999999999999988753    344566777888899889888888888888887


Q ss_pred             cCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHH
Q 009568          273 DGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWT  352 (532)
Q Consensus       273 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~  352 (532)
                      .+...+..     .++|.|..+|.+.+.-++..|+.+|++++..++..+..+      ...+.-+.+. +..+++..-..
T Consensus       173 en~~~yv~-----PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii------~~kl~e~~D~-S~lv~~~V~eg  240 (253)
T 2db0_A          173 ENSFKYVN-----PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVV------IKRLEELNDT-SSLVNKTVKEG  240 (253)
T ss_dssp             TTTHHHHG-----GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHH------HHHHHHCCCS-CHHHHHHHHHH
T ss_pred             ccCccccC-----cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHH------HHHHHHhcCc-HHHHHHHHHHH
Confidence            77665433     789999999999999999999999999999988655432      2345556666 78888888888


Q ss_pred             HHHHhc
Q 009568          353 ISNITA  358 (532)
Q Consensus       353 L~nl~~  358 (532)
                      |+.++.
T Consensus       241 L~rl~l  246 (253)
T 2db0_A          241 ISRLLL  246 (253)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888765

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.80  E-value=6.9e-09  Score=95.18  Aligned_cols=189  Identities=15%  Similarity=0.135  Sum_probs=142.6

Q ss_pred             hHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhC-CCCccchhhHHHHHHHhhcCCcchhHH
Q 009568          245 ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG-HPSPSVLIPALRTVGNIVTGDDFQTQC  323 (532)
Q Consensus       245 ~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~al~~L~nl~~~~~~~~~~  323 (532)
                      +-+.+...+.+.++..+..++..|..++.+.+....... ..+++.|...+. +.+..++..|+.+++.++..-......
T Consensus        16 l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~   94 (242)
T 2qk2_A           16 MPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN   94 (242)
T ss_dssp             SCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred             CCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            334577888899999999999999988765221100001 145777888885 889999999999999999654332222


Q ss_pred             HhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCC
Q 009568          324 IITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGT  403 (532)
Q Consensus       324 ~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~  403 (532)
                      .. ..++|.++..+.+. ++.+|..|+.+|..++...+  ..     .+++.+...+.+.++.+|..++..|..++....
T Consensus        95 ~~-~~ilp~ll~~l~d~-~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~  165 (242)
T 2qk2_A           95 YA-SACVPSLLEKFKEK-KPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNKNPSVKSETALFIARALTRTQ  165 (242)
T ss_dssp             HH-HHHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCC
T ss_pred             HH-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence            22 25789999999998 99999999999999987432  11     257788899999999999999999999765433


Q ss_pred             HH--HHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 009568          404 HE--QIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG  445 (532)
Q Consensus       404 ~~--~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~  445 (532)
                      ++  ...++-  .+++.|..+|.+.+++++..+..++..+....
T Consensus       166 ~~~~~~~~l~--~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v  207 (242)
T 2qk2_A          166 PTALNKKLLK--LLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM  207 (242)
T ss_dssp             GGGCCHHHHH--HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCccHHHHH--HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence            22  123322  47999999999999999999999999987643

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.72  E-value=6.6e-08  Score=88.58  Aligned_cols=186  Identities=15%  Similarity=0.224  Sum_probs=142.5

Q ss_pred             HHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhc-CCCHHHHHHHHHHHHHhccCChhHHHHHH
Q 009568          205 IPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH-SNDEEVLTDACWALSYLSDGTNDKIQAVI  283 (532)
Q Consensus       205 ~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~l~~~~~~~~~~~~  283 (532)
                      +.+...+ .+.+...+..++..|..++...+.........+++.|...+. +.+..++..++.+++.++..-........
T Consensus        18 ~~l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~   96 (242)
T 2qk2_A           18 KDFYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA   96 (242)
T ss_dssp             TTHHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred             HHHHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            3466666 677889999999999998876322222234678889999995 88999999999999999854332222222


Q ss_pred             HhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHH
Q 009568          284 EAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG-NRD  362 (532)
Q Consensus       284 ~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~  362 (532)
                       ..+++.++..+.+++..++..|..+|..++....  ..     .+++.+...|.+. ++.+|..++..|+.+... .++
T Consensus        97 -~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~  167 (242)
T 2qk2_A           97 -SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNK-NPSVKSETALFIARALTRTQPT  167 (242)
T ss_dssp             -HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGG
T ss_pred             -HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCC
Confidence             2688999999999999999999999999987543  11     3678899999988 999999999999997653 333


Q ss_pred             H-HHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009568          363 Q-IQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSG  401 (532)
Q Consensus       363 ~-~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~  401 (532)
                      . ....+. .++|.|+.++.+.++++|..|..+++.++..
T Consensus       168 ~~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~  206 (242)
T 2qk2_A          168 ALNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIKL  206 (242)
T ss_dssp             GCCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence            1 122233 3789999999999999999999999998763

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.68  E-value=5.6e-06  Score=80.61  Aligned_cols=322  Identities=11%  Similarity=0.101  Sum_probs=192.0

Q ss_pred             CCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCc---hhHHHHHhcCCh-HHHHHHhhhhhhhHHHHHHHHHhhhccCC
Q 009568          159 HGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSP---RCRDLVLSQGAL-IPLLAQLNERAKLSMLRNATWTLSNFCRG  233 (532)
Q Consensus       159 ~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~---~~~~~~~~~~~l-~~L~~ll~~~~~~~~~~~a~~~L~~L~~~  233 (532)
                      ..++..++.+|.. .+.++.+..+..+.-+..+.+   .....+.+.... ..+........+.-....++.+++.++..
T Consensus        76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~  155 (480)
T 1ho8_A           76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN  155 (480)
T ss_dssp             STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred             chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence            3567788888875 678888999988888887766   322233332221 12222222334555556666666666543


Q ss_pred             CCCCCcccccchHH--HHHHhhcC-CCHHHHHHHHHHHHHhccCChhHHHHHHHh--CchHHHHHhhC----CC------
Q 009568          234 KPQPPFDQVRPALP--ALAQLVHS-NDEEVLTDACWALSYLSDGTNDKIQAVIEA--GVCPRLVELLG----HP------  298 (532)
Q Consensus       234 ~~~~~~~~~~~~l~--~L~~lL~~-~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~l~~L~~lL~----~~------  298 (532)
                      .+. .......++.  -+...|.. ++...+.-++.++..+..... ....+.+.  ..++.++.++.    +.      
T Consensus       156 ~~~-~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~-~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~  233 (480)
T 1ho8_A          156 GLH-NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPE-YRDVIWLHEKKFMPTLFKILQRATDSQLATRIV  233 (480)
T ss_dssp             TTC-CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHH-HHHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred             CCc-cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchh-HHHHHHHcccchhHHHHHHHHHhhccccccccc
Confidence            222 2222233333  34444544 234445567777777765533 33444432  24555544332    11      


Q ss_pred             -------CccchhhHHHHHHHhhcCCcchhHHHhhcCch--HHHHHHhcCCCchhHHHHHHHHHHHHhcCC----HHHHH
Q 009568          299 -------SPSVLIPALRTVGNIVTGDDFQTQCIITYGAL--PYLLGLLTHSHKKSIKKEACWTISNITAGN----RDQIQ  365 (532)
Q Consensus       299 -------~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l--~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~----~~~~~  365 (532)
                             ...++..++.|++-++...+ ....+...++.  +.|+.+++....++|.+-++.+|.|+....    ...+.
T Consensus       234 ~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~  312 (480)
T 1ho8_A          234 ATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK  312 (480)
T ss_dssp             -----CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred             cccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHH
Confidence                   23457889999998887544 55556665543  567777876657899999999999999754    12233


Q ss_pred             H-HHHcCCHHHHHHHHhcC---chhHHHHHHHHHHHhh---------------------cCCCHHHHHHHHHc-------
Q 009568          366 A-VIDAGLVGPLVNLLQNA---EFDIKKEAAWAISNAT---------------------SGGTHEQIKYLVRE-------  413 (532)
Q Consensus       366 ~-l~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~nl~---------------------~~~~~~~~~~l~~~-------  413 (532)
                      . ++..++ +.++..|...   |+++....-.....+-                     .......-+.|+..       
T Consensus       313 ~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e  391 (480)
T 1ho8_A          313 QLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKK  391 (480)
T ss_dssp             HHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSS
T ss_pred             HHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHh
Confidence            2 223334 4455666542   6666543333222211                     11111111122221       


Q ss_pred             ---CChHHHHhhcCC----------CCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcC
Q 009568          414 ---GCIKPLCDLFVC----------PDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSH  480 (532)
Q Consensus       414 ---~~l~~L~~lL~~----------~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~  480 (532)
                         .++..|+++|++          .|+.+..+|+.=|..+++..+..             ...+++.|+-+.+..|+.|
T Consensus       392 ~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~g-------------r~i~~~lg~K~~VM~Lm~h  458 (480)
T 1ho8_A          392 DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPES-------------IDVLDKTGGKADIMELLNH  458 (480)
T ss_dssp             GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTH-------------HHHHHHHSHHHHHHHHTSC
T ss_pred             cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcch-------------hHHHHHcCcHHHHHHHhcC
Confidence               246888888873          46788888888888888876543             5678899999999999999


Q ss_pred             CCHHHHHHHHHHHHHhC
Q 009568          481 DNNEIYEKAVKILETYW  497 (532)
Q Consensus       481 ~~~~v~~~a~~il~~~~  497 (532)
                      +|++|+..|...+.++.
T Consensus       459 ~d~~Vr~~AL~avQklm  475 (480)
T 1ho8_A          459 SDSRVKYEALKATQAII  475 (480)
T ss_dssp             SSHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            99999999998887753

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.61  E-value=1.3e-06  Score=75.75  Aligned_cols=187  Identities=16%  Similarity=0.151  Sum_probs=149.1

Q ss_pred             ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (532)
Q Consensus        74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  153 (532)
                      +.+..+++.|+..|+.++..|+..+.++++.- +.......-..++|.++.++.+.+ ..+...|+.||..+..+.+-..
T Consensus        33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~-~~~l~~~~~e~~Ld~iI~llk~~d-Ekval~A~r~L~~LLe~vpL~~  110 (265)
T 3b2a_A           33 RALFLILELAGEDDETTRLRAFVALGEILKRA-DSDLRMMVLERHLDVFINALSQEN-EKVTIKALRALGYLVKDVPMGS  110 (265)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCCSTT-HHHHHHHHHHHHHHHTTCCBCH
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHHHHHHhc-cccccHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHcCCCCCH
Confidence            36788999999999999999999999999863 233444444568999999999888 9999999999999998665444


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCC
Q 009568          154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG  233 (532)
Q Consensus       154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~  233 (532)
                      ..+..  ++.+|..++.++++-+++.++..++.+-.-.+ .+      +++..+..++ .+.+..++..++.++.+++..
T Consensus       111 ~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~-~~------~V~~~l~sLl-~Skd~~vK~agl~~L~eia~~  180 (265)
T 3b2a_A          111 KTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLED-SK------LVRTYINELV-VSPDLYTKVAGFCLFLNMLNS  180 (265)
T ss_dssp             HHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC-CH------HHHHHHHHHH-TCSSHHHHHHHHHHHHHHGGG
T ss_pred             HHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccc-hH------HHHHHHHHHH-hCCChhHHHHHHHHHHHhhcc
Confidence            44442  45888999999999999999999999832222 12      2366788888 899999999999999999986


Q ss_pred             CCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 009568          234 KPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG  274 (532)
Q Consensus       234 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~  274 (532)
                      .  .+......++.-+..+|++.|+.++..|+.++-.+...
T Consensus       181 S--~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~  219 (265)
T 3b2a_A          181 S--ADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSF  219 (265)
T ss_dssp             C--SSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred             c--CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            4  22334566777778889999999999999999888755

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.58  E-value=2.6e-07  Score=84.62  Aligned_cols=190  Identities=11%  Similarity=0.082  Sum_probs=139.6

Q ss_pred             HHHhhhhhhhHHHHHHHHHhhh-ccCCCCCCC--cccccchHHHHHHhh-cCCCHHHHHHHHHHHHHhccCCh-hHHH-H
Q 009568          208 LAQLNERAKLSMLRNATWTLSN-FCRGKPQPP--FDQVRPALPALAQLV-HSNDEEVLTDACWALSYLSDGTN-DKIQ-A  281 (532)
Q Consensus       208 ~~ll~~~~~~~~~~~a~~~L~~-L~~~~~~~~--~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~l~~~~~-~~~~-~  281 (532)
                      ...+ .+.+..-+..++..|.. ++.+.+...  ......++..|.+.+ .+.+..++..++.+++.++.+-. ..+. .
T Consensus        22 ~~~l-~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~  100 (249)
T 2qk1_A           22 QERI-TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD  100 (249)
T ss_dssp             HHHH-TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred             HHHh-hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence            4445 56778888899999999 876543222  223356788899999 68899999999999999985322 1122 1


Q ss_pred             HHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCH
Q 009568          282 VIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNR  361 (532)
Q Consensus       282 ~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~  361 (532)
                      .. ..+++.++..+.+....++..+..++-.++...+.......-..+++.|...|.+. ++.+|..++.+|+.++...+
T Consensus       101 y~-~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~~  178 (249)
T 2qk1_A          101 YV-SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEEK  178 (249)
T ss_dssp             HH-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCC
T ss_pred             HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcC
Confidence            22 24789999999998899999999999888874431110000113677889999998 99999999999999986332


Q ss_pred             ---HHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhc
Q 009568          362 ---DQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS  400 (532)
Q Consensus       362 ---~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~  400 (532)
                         ......+...++|.|..++.+.+..||..|..+++.++.
T Consensus       179 ~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          179 DGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             SCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             CcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence               444444534589999999999999999999999998864

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.52  E-value=1.9e-08  Score=82.46  Aligned_cols=120  Identities=18%  Similarity=0.161  Sum_probs=91.8

Q ss_pred             hCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHH
Q 009568          285 AGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI  364 (532)
Q Consensus       285 ~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~  364 (532)
                      ...++.+..+|.++++.++..|+++|+.+..  +          .++.|..+|.++ ++.+|..|+|+|+++..  +.  
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~--~----------~~~~L~~~L~d~-~~~vR~~A~~aL~~~~~--~~--   73 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD--E----------AFEPLLESLSNE-DWRIRGAAAWIIGNFQD--ER--   73 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSS--T----------THHHHHHGGGCS-CHHHHHHHHHHHGGGCS--HH--
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc--h----------HHHHHHHHHcCC-CHHHHHHHHHHHHhcCC--HH--
Confidence            4678889999999999999999999987642  1          258899999988 99999999999999853  22  


Q ss_pred             HHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHH
Q 009568          365 QAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLEN  440 (532)
Q Consensus       365 ~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~  440 (532)
                             .++.|+..+.++++.||..|+++|+++..   +         ..++.|..+++++++.++..+..+|..
T Consensus        74 -------a~~~L~~~L~d~~~~VR~~A~~aL~~~~~---~---------~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           74 -------AVEPLIKLLEDDSGFVRSGAARSLEQIGG---E---------RVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             -------HHHHHHHHHHHCCTHHHHHHHHHHHHHCS---H---------HHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             -------HHHHHHHHHcCCCHHHHHHHHHHHHHhCc---H---------HHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence                   46788889999999999999999999852   2         247788889999999999999988764

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.50  E-value=3.9e-07  Score=83.39  Aligned_cols=193  Identities=11%  Similarity=0.096  Sum_probs=139.9

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHH-hhCCCchhHHHHHh-cCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCC-CCCc-
Q 009568          164 IFVKLLASPSDDVREQAVWALGN-VAGDSPRCRDLVLS-QGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP-QPPF-  239 (532)
Q Consensus       164 ~L~~lL~~~~~~v~~~a~~~L~n-l~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~-~~~~-  239 (532)
                      .+...+.+.++.-|..++..|.. ++...+........ ..++..|...+.++.+..++..++.++..|+.+-. ..-. 
T Consensus        20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            35566788999999999999999 87543322100000 12355666666556788899999999999996543 2222 


Q ss_pred             ccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHH-HHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCc
Q 009568          240 DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAV-IEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD  318 (532)
Q Consensus       240 ~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~-~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~  318 (532)
                      .....++|.++..+.+..+.|+..+..++-.++...+...... + ..+++.|+..|.+.++.++..++.+|+.++....
T Consensus       100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l-~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~  178 (249)
T 2qk1_A          100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRN-EDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK  178 (249)
T ss_dssp             HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTT-HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence            4556789999999998899999998888887775331100000 1 1367788899999999999999999999997655


Q ss_pred             c---hhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 009568          319 F---QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (532)
Q Consensus       319 ~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  358 (532)
                      .   .....+...++|.+..++.++ ++.||..|..+++.++.
T Consensus       179 ~~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          179 DGYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIK  220 (249)
T ss_dssp             SCSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred             CcchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            3   222334248999999999998 99999999999999875

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=98.49  E-value=1.6e-05  Score=87.35  Aligned_cols=340  Identities=11%  Similarity=0.083  Sum_probs=189.7

Q ss_pred             CCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHH-HhhcCCCCHHHHHHHHHHHHHHhcCC---h--hhHHHHHh
Q 009568           85 SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFV-EFLMREDYPQLQFEAAWALTNIASGT---S--ENTKVVID  158 (532)
Q Consensus        85 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv-~lL~~~~~~~~~~~a~~~L~~l~~~~---~--~~~~~i~~  158 (532)
                      +.++.+...++.++...++   .-+...++..++++.+. .+|.  + ++++..|+.||..+....   +  .....+..
T Consensus       206 ~~~~~l~~~~L~~l~s~l~---WI~i~~i~~~~ll~~l~~~~L~--~-~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~  279 (1023)
T 4hat_C          206 GASSSLIVATLESLLRYLH---WIPYRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL  279 (1023)
T ss_dssp             CSSCHHHHHHHHHHHHHTT---TSCTHHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHH---hCCHHHhcchhHHHHHHHHHcC--C-HHHHHHHHHHHHHHHccccCCchHHHHHHHHH
Confidence            3456677778888888886   46677888899999999 8885  3 789999999999998722   2  12211110


Q ss_pred             --CCChHHH--------------HHhhCCCCHHHHHHHHHHHHHhhC-------CCchhHHHHHhcCChHHHHHHhhhhh
Q 009568          159 --HGAVPIF--------------VKLLASPSDDVREQAVWALGNVAG-------DSPRCRDLVLSQGALIPLLAQLNERA  215 (532)
Q Consensus       159 --~g~i~~L--------------~~lL~~~~~~v~~~a~~~L~nl~~-------~~~~~~~~~~~~~~l~~L~~ll~~~~  215 (532)
                        .+.++.+              ...-...+.+..+..+.++..+..       ..+..+..+.  .++..|+.+- ...
T Consensus       280 lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~--~~l~~Ll~~~-~~~  356 (1023)
T 4hat_C          280 FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLS-KIE  356 (1023)
T ss_dssp             HHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHH--HHHHHHHHHT-TSS
T ss_pred             HHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHH--HHHHHHHHhh-CCC
Confidence              0111111              111112345666666666655432       1122222211  1122333332 345


Q ss_pred             hhHHHHHHHHHhhhccCCCC--CCCcccccch----HHHHHHhhcCCC--------------------HH-HHHHHH-HH
Q 009568          216 KLSMLRNATWTLSNFCRGKP--QPPFDQVRPA----LPALAQLVHSND--------------------EE-VLTDAC-WA  267 (532)
Q Consensus       216 ~~~~~~~a~~~L~~L~~~~~--~~~~~~~~~~----l~~L~~lL~~~d--------------------~~-v~~~a~-~~  267 (532)
                      +.++...++..+..|+..-.  ........++    ++.+++-+..+.                    ++ ...... .+
T Consensus       357 d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~  436 (1023)
T 4hat_C          357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREV  436 (1023)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHH
Confidence            67777888777777765321  1122223333    334443333221                    01 111011 22


Q ss_pred             HHHhccCC-hhHHHHHHHhCchHHHHHhhCC--CCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcC-----
Q 009568          268 LSYLSDGT-NDKIQAVIEAGVCPRLVELLGH--PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH-----  339 (532)
Q Consensus       268 L~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~-----  339 (532)
                      |.+++.-. ++...     -+++.+...+..  .+|..+..+++++|.++.+.......-.-..+++.|+.++.+     
T Consensus       437 L~~l~~l~~~~~~~-----~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d  511 (1023)
T 4hat_C          437 LVYLTHLNVIDTEE-----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKD  511 (1023)
T ss_dssp             HHHHHHHCHHHHHH-----HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHH
T ss_pred             HHHHhccCHHHHHH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCc
Confidence            22322111 11111     123344444443  578999999999999998766432222233677888888764     


Q ss_pred             CCchhHHHHHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHH--------
Q 009568          340 SHKKSIKKEACWTISNITA---GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIK--------  408 (532)
Q Consensus       340 ~~~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~--------  408 (532)
                      . ...++..++|++|.++.   .+++....     ++..|+..+..+++.++..|++++.+++..+......        
T Consensus       512 ~-k~~v~~t~~~~lGry~~wl~~~~~~L~~-----vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p  585 (1023)
T 4hat_C          512 N-KAVVASDIMYVVGQYPRFLKAHWNFLRT-----VILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEP  585 (1023)
T ss_dssp             H-HHHHHHHHHHHHHTCHHHHHHCHHHHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSC
T ss_pred             c-hHHHHHHHHHHHHHHHHHHhccHHHHHH-----HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCch
Confidence            2 45577789999998875   33443333     4556777777778899999999999999854332210        


Q ss_pred             HHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 009568          409 YLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGE  446 (532)
Q Consensus       409 ~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~  446 (532)
                      ++-  .++..+...+..-++.-+..+.+++..++....
T Consensus       586 ~~~--~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~  621 (1023)
T 4hat_C          586 FIQ--TIIRDIQKTTADLQPQQVHTFYKACGIIISEER  621 (1023)
T ss_dssp             HHH--HHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred             hHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence            111  133444444444566666777788887776543

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.48  E-value=9.6e-06  Score=87.11  Aligned_cols=301  Identities=13%  Similarity=0.160  Sum_probs=209.8

Q ss_pred             ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC---h
Q 009568           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGT---S  150 (532)
Q Consensus        74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~---~  150 (532)
                      ..+..+++.+...+...+..++..+..++.+....   ..+..+++..|.+.+.+.. ..  ..|+.++..++...   +
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~k~-~~--~~a~~~~~~~~~~~~~~~   87 (986)
T 2iw3_A           14 KVLEELFQKLSVATADNRHEIASEVASFLNGNIIE---HDVPEHFFGELAKGIKDKK-TA--ANAMQAVAHIANQSNLSP   87 (986)
T ss_dssp             HHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSS---SSCCHHHHHHHHHHHTSHH-HH--HHHHHHHHHHTCTTTCCT
T ss_pred             HHHHHHHhhccccchhHHHHHHHHHHHHHhccccc---cccchhHHHHHHHHHhccC-CH--HHHHHHHHHHHHhcCCCC
Confidence            45666777777655666678888888887753111   1122368888888888765 23  88889999998522   2


Q ss_pred             hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhh
Q 009568          151 ENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSN  229 (532)
Q Consensus       151 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~  229 (532)
                      ..-..++  +.++.++..+.+....++..|-.++..++..- +...     ..+++.|+..+.....-..+..++.++..
T Consensus        88 ~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~  160 (986)
T 2iw3_A           88 SVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSA  160 (986)
T ss_dssp             TTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred             CcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence            2223333  67899999988888899999888887776433 3222     22588888888444466788889999999


Q ss_pred             ccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccC--ChhHHHHHHHhCchHHHHHhhCCCCccchhhHH
Q 009568          230 FCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG--TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPAL  307 (532)
Q Consensus       230 L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al  307 (532)
                      |+...+.........++|.+...+.+..++|...+..++..+|..  +.+. .     ..+|.|+..+.+++.  ...++
T Consensus       161 ~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~-~-----~~~~~~~~~~~~p~~--~~~~~  232 (986)
T 2iw3_A          161 MVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI-E-----RFIPSLIQCIADPTE--VPETV  232 (986)
T ss_dssp             HHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT-G-----GGHHHHHHHHHCTTH--HHHHH
T ss_pred             HHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch-h-----hhHHHHHHHhcChhh--hHHHH
Confidence            987643323334577889999999999999999999988887742  2211 1     678999999988753  44555


Q ss_pred             HHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHcCCHHHHHHHHhc-Cc
Q 009568          308 RTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA--GNRDQIQAVIDAGLVGPLVNLLQN-AE  384 (532)
Q Consensus       308 ~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~i~~L~~ll~~-~~  384 (532)
                      ..|+.-+.-.... ...+ +=++|.|.+-|... ...+++.++-++.|+|.  .+|.....++.. ++|.|-...+. .+
T Consensus       233 ~~l~~~tfv~~v~-~~~l-~~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~-l~p~~~~~~~~~~~  308 (986)
T 2iw3_A          233 HLLGATTFVAEVT-PATL-SIMVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAPFLGK-LLPGLKSNFATIAD  308 (986)
T ss_dssp             HHHTTCCCCSCCC-HHHH-HHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHHHHTT-THHHHHHHTTTCCS
T ss_pred             HHhhcCeeEeeec-chhH-HHHHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhhhhhh-hhhHHHHHhhccCC
Confidence            6555443322211 1111 12467788888877 88899999999999997  678777777643 78888777765 48


Q ss_pred             hhHHHHHHHHHHHhh
Q 009568          385 FDIKKEAAWAISNAT  399 (532)
Q Consensus       385 ~~v~~~a~~aL~nl~  399 (532)
                      |++|..|..|+..+.
T Consensus       309 pe~r~~~~~a~~~l~  323 (986)
T 2iw3_A          309 PEAREVTLRALKTLR  323 (986)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999998888887773

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.47  E-value=2.3e-08  Score=81.91  Aligned_cols=121  Identities=18%  Similarity=0.174  Sum_probs=91.7

Q ss_pred             CCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH
Q 009568          116 SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR  195 (532)
Q Consensus       116 ~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~  195 (532)
                      ...++.++.+|++++ +.+|..|+++|+.+..            ..++.|+.+|.++++.+|..++++|+++..  +   
T Consensus        11 ~~~~~~l~~~L~~~~-~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~---   72 (131)
T 1te4_A           11 SSGLVPRGSHMADEN-KWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---   72 (131)
T ss_dssp             ----------CCSSC-CCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---
T ss_pred             cccHHHHHHHhcCCC-HHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H---
Confidence            346788899999887 8999999999887653            126889999999999999999999999842  1   


Q ss_pred             HHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 009568          196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYL  271 (532)
Q Consensus       196 ~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l  271 (532)
                            ..++.|+..+ .+.++.++..++|+|..+..          ...++.|..++.++++.++..++++|..+
T Consensus        73 ------~a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           73 ------RAVEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             ------HHHHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             ------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence                  1377888888 77889999999999998863          35788999999988999999999888653

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.43  E-value=1.4e-05  Score=88.58  Aligned_cols=329  Identities=11%  Similarity=0.019  Sum_probs=181.1

Q ss_pred             HHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhc---------------CCCCHHHHHHHHHHHHHHhcCCh--h
Q 009568           89 SLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLM---------------REDYPQLQFEAAWALTNIASGTS--E  151 (532)
Q Consensus        89 ~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~---------------~~~~~~~~~~a~~~L~~l~~~~~--~  151 (532)
                      .++..++.++...+... ..+..  ....+++.+.. |.               ..++++++..|+.+|..+....+  +
T Consensus       204 ~~~~~al~~l~~~~~~~-~ip~~--~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~  279 (971)
T 2x1g_F          204 SNMNRAVKCVGTWIKNI-GYTIE--GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHN  279 (971)
T ss_dssp             HHHHHHHHHHHHHHHHS-CCCGG--GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGG
T ss_pred             hHHHHHHHHHHHHHhhC-CcCcc--ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccc
Confidence            57778888888776520 11222  34456777766 41               11237899999999999987422  1


Q ss_pred             hHHHHHhCCChHHHHHh-------hCCCC---HHHHHHHHHHHHHhhCCCch-hHHHHH-----h----cCChHHHHHHh
Q 009568          152 NTKVVIDHGAVPIFVKL-------LASPS---DDVREQAVWALGNVAGDSPR-CRDLVL-----S----QGALIPLLAQL  211 (532)
Q Consensus       152 ~~~~i~~~g~i~~L~~l-------L~~~~---~~v~~~a~~~L~nl~~~~~~-~~~~~~-----~----~~~l~~L~~ll  211 (532)
                      ....+.  .+++.++.+       +...+   .......+..+..++..... +.+.+.     .    ...++.++.+.
T Consensus       280 ~~~~~~--~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~  357 (971)
T 2x1g_F          280 YPKTAF--VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCT  357 (971)
T ss_dssp             CHHHHH--HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHH--HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHH
Confidence            111111  123333332       23334   26666667776666532221 110000     0    11233344433


Q ss_pred             hh----hhhhHHHHHHHHHhhhccCCC--------CCCCc----ccccchHHHHHHhhcCC-C-------H-------HH
Q 009568          212 NE----RAKLSMLRNATWTLSNFCRGK--------PQPPF----DQVRPALPALAQLVHSN-D-------E-------EV  260 (532)
Q Consensus       212 ~~----~~~~~~~~~a~~~L~~L~~~~--------~~~~~----~~~~~~l~~L~~lL~~~-d-------~-------~v  260 (532)
                      ..    ..+..+...+++++..++...        .....    .....+++.++..+..+ +       +       ..
T Consensus       358 ~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~  437 (971)
T 2x1g_F          358 DKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCY  437 (971)
T ss_dssp             HCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHH
T ss_pred             cCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHH
Confidence            12    246788899999988886521        01111    11233444444444322 1       1       23


Q ss_pred             HHHHHHHHHHhccCCh-hHHHHHHHhCchHHHHHhhCC-----CCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHH
Q 009568          261 LTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLGH-----PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLL  334 (532)
Q Consensus       261 ~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~-----~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~  334 (532)
                      +..+..++..++.... ....     -+++.+...+.+     .++..+..++.+++.++.+......     ..++.++
T Consensus       438 R~~~~~~l~~~~~~~~~~~l~-----~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~-----~~l~~l~  507 (971)
T 2x1g_F          438 RQDISDTFMYCYDVLNDYILE-----ILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK-----RQIPRLM  507 (971)
T ss_dssp             HHHHHHHHHHHHTTCTTHHHH-----HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh-----HHHHHHH
Confidence            4555556655554332 1111     122333333332     6788999999999999987653321     2333333


Q ss_pred             HHh---c--CCCchhHHHHHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHH
Q 009568          335 GLL---T--HSHKKSIKKEACWTISNITA---GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQ  406 (532)
Q Consensus       335 ~lL---~--~~~~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~  406 (532)
                      .++   .  +. ++.+|..++|+++.++.   .++....     .+++.|+..+.   +.++..|++++.+++.......
T Consensus       508 ~~l~~l~~~d~-~~~vr~~a~~~l~~~~~~l~~~~~~l~-----~vl~~l~~~l~---~~v~~~A~~al~~l~~~~~~~l  578 (971)
T 2x1g_F          508 RVLAEIPYEKL-NVKLLGTALETMGSYCNWLMENPAYIP-----PAINLLVRGLN---SSMSAQATLGLKELCRDCQLQL  578 (971)
T ss_dssp             HHHHHSCTTTS-CHHHHHHHHHHHHHTHHHHC----CHH-----HHHHHHHHHHH---SSCHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHhcCcccc-CHHHHHHHHHHHHHHHHHHhcCHHHHH-----HHHHHHHHHhC---hHHHHHHHHHHHHHHHHHHHhc
Confidence            333   2  34 78999999999999885   1222221     24566777672   7899999999999997654444


Q ss_pred             HHHHHHcCChHHHHhhcCC--CCHHHHHHHHHHHHHHHHh
Q 009568          407 IKYLVREGCIKPLCDLFVC--PDPRIVTVCLEGLENILKV  444 (532)
Q Consensus       407 ~~~l~~~~~l~~L~~lL~~--~d~~v~~~al~~L~~l~~~  444 (532)
                      ..++  ..++..|..++..  -+.+.+..+++++..++..
T Consensus       579 ~p~~--~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~  616 (971)
T 2x1g_F          579 KPYA--DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL  616 (971)
T ss_dssp             HHHH--HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred             cccH--HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence            4442  2467777777776  3578888999999999875

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.34  E-value=6.2e-05  Score=83.19  Aligned_cols=296  Identities=10%  Similarity=0.091  Sum_probs=168.1

Q ss_pred             HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhC------CCCHHHHHHHHHHHHHhhCCCchhHHHHHhc-----
Q 009568          133 QLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA------SPSDDVREQAVWALGNVAGDSPRCRDLVLSQ-----  201 (532)
Q Consensus       133 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~------~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~-----  201 (532)
                      ..|..|..+|..++....+   .++. .+++.+.+.+.      +++...++.|+.+++.++......... ...     
T Consensus       376 s~R~aa~~~L~~l~~~~~~---~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~-~~~~~~~~  450 (960)
T 1wa5_C          376 TRRRACTDFLKELKEKNEV---LVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAG-VSSTNNLL  450 (960)
T ss_dssp             CHHHHHHHHHHHHHHHCHH---HHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTB-CCCBCTTC
T ss_pred             CcHHHHHHHHHHHHHHcch---hHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCC-cccccccc
Confidence            4677788888888763321   2211 12344444454      467889999999999998532111000 000     


Q ss_pred             CChH----HHHHHhhhhh---hhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 009568          202 GALI----PLLAQLNERA---KLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG  274 (532)
Q Consensus       202 ~~l~----~L~~ll~~~~---~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~  274 (532)
                      ...+    .++..+ .+.   ++-++..++|+++.++..-   .......+++.++..|.+++..|+..|+++|.+++..
T Consensus       451 ~l~~~l~~~v~p~l-~~~~~~~p~vr~~a~~~lg~~~~~~---~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~  526 (960)
T 1wa5_C          451 NVVDFFTKEIAPDL-TSNNIPHIILRVDAIKYIYTFRNQL---TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTI  526 (960)
T ss_dssp             CHHHHHHHHTHHHH-HCSSCSCHHHHHHHHHHHHHTGGGS---CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHhHHHh-cCCCCCCceehHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence            1111    223334 333   7889999999999999863   2345677888899989888899999999999998863


Q ss_pred             C-----------hhHHHHHHHhCchHHHHHhhCCCC-----ccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHh-
Q 009568          275 T-----------NDKIQAVIEAGVCPRLVELLGHPS-----PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLL-  337 (532)
Q Consensus       275 ~-----------~~~~~~~~~~~~l~~L~~lL~~~~-----~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL-  337 (532)
                      .           .+.....+ ..+++.|+.++....     ......++.+|+.++....+....... .+++.|...+ 
T Consensus       527 ~~~~~~~~~~~~~~~l~p~l-~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~-~l~~~L~~~l~  604 (960)
T 1wa5_C          527 RESNTSPAFIFHKEDISNST-EILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVT  604 (960)
T ss_dssp             BSCSSSCCBSSCGGGTTTTH-HHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHH
T ss_pred             ccccccccccccHHHhhhhH-HHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHH
Confidence            1           11111111 145566666666531     113456677777765422211111111 2334444433 


Q ss_pred             ---cCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc
Q 009568          338 ---THSHKKSIKKEACWTISNITAG-NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVRE  413 (532)
Q Consensus       338 ---~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~  413 (532)
                         +++.++..+..++.+|+.++.. .++....+. ..++|.+...+.....++...+...+..+..... ....++.  
T Consensus       605 ~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~-~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~--  680 (960)
T 1wa5_C          605 IMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV-DSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSA-TIPESIK--  680 (960)
T ss_dssp             HHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH-HHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCS-SCCTTTG--
T ss_pred             HHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHH-HHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhcc-CCCHHHH--
Confidence               3443667777788899988874 444443433 3378888888887766777777777776654320 0001111  


Q ss_pred             CChHHHH--hhcCCCCHHHHHHHHHHHHHHHHhh
Q 009568          414 GCIKPLC--DLFVCPDPRIVTVCLEGLENILKVG  445 (532)
Q Consensus       414 ~~l~~L~--~lL~~~d~~v~~~al~~L~~l~~~~  445 (532)
                      .+++.+.  ..++...  .+..++.+|..++..+
T Consensus       681 ~~~~~l~~~~~~~~~~--~~~~~~~~L~~~~~~~  712 (960)
T 1wa5_C          681 PLAQPLLAPNVWELKG--NIPAVTRLLKSFIKTD  712 (960)
T ss_dssp             GGHHHHTSGGGGCCTT--THHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCHHHhcCCC--CchhHHHHHHHHHHhC
Confidence            1344444  4444332  3445566666666544

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.26  E-value=0.00018  Score=70.10  Aligned_cols=324  Identities=12%  Similarity=0.097  Sum_probs=191.2

Q ss_pred             CCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCh---hhHHHHHhCCCh-HHHHH-hhCCCCHHHHHHHHHHHHHhhCC
Q 009568          116 SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTS---ENTKVVIDHGAV-PIFVK-LLASPSDDVREQAVWALGNVAGD  190 (532)
Q Consensus       116 ~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~---~~~~~i~~~g~i-~~L~~-lL~~~~~~v~~~a~~~L~nl~~~  190 (532)
                      ...+..++.+|......++....+..+..+...++   .....+.+..-. ..+.. ++..++.-....+..++..++..
T Consensus        76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~  155 (480)
T 1ho8_A           76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN  155 (480)
T ss_dssp             STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred             chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence            45778899999876668888888888888887665   444444444322 22333 33334455556666666666533


Q ss_pred             CchhHHHHHhcCChH--HHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccc--cchHHHHHHhhcC-----------
Q 009568          191 SPRCRDLVLSQGALI--PLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQV--RPALPALAQLVHS-----------  255 (532)
Q Consensus       191 ~~~~~~~~~~~~~l~--~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~--~~~l~~L~~lL~~-----------  255 (532)
                      .+...+.+.  ..+.  -++..|....+......++.+|..|.+.+........  ...+|.++.++..           
T Consensus       156 ~~~~~~~l~--~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~  233 (480)
T 1ho8_A          156 GLHNVKLVE--KLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIV  233 (480)
T ss_dssp             TTCCHHHHH--HHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred             CCccHhHHH--HHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccc
Confidence            332111110  0112  2344443222233345678888888776533322211  2345655543331           


Q ss_pred             ----C--CHHHHHHHHHHHHHhccCChhHHHHHHHhCch--HHHHHhhCC-CCccchhhHHHHHHHhhcCCcc----hhH
Q 009568          256 ----N--DEEVLTDACWALSYLSDGTNDKIQAVIEAGVC--PRLVELLGH-PSPSVLIPALRTVGNIVTGDDF----QTQ  322 (532)
Q Consensus       256 ----~--d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l--~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~~----~~~  322 (532)
                          +  ..+++..++.|++-++.... ....+...++.  +.|+..++. ....+..-++.++.|+......    ...
T Consensus       234 ~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~  312 (480)
T 1ho8_A          234 ATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK  312 (480)
T ss_dssp             -----CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred             cccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHH
Confidence                1  24678999999998887654 44555554533  556666644 5678888899999999986531    112


Q ss_pred             -HHhhcCchHHHHHHhcCC-C-chhHHHHHHHHHHHHhc-----------------C----CHHHHH-HHH--------H
Q 009568          323 -CIITYGALPYLLGLLTHS-H-KKSIKKEACWTISNITA-----------------G----NRDQIQ-AVI--------D  369 (532)
Q Consensus       323 -~~~~~~~l~~L~~lL~~~-~-~~~v~~~a~~~L~nl~~-----------------~----~~~~~~-~l~--------~  369 (532)
                       .++..++++ ++..|... . |+++....-+....+-.                 |    +|-+.. .+.        +
T Consensus       313 ~~~~~~~~l~-~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e  391 (480)
T 1ho8_A          313 QLLLLGNALP-TVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKK  391 (480)
T ss_dssp             HHHHHHCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSS
T ss_pred             HHHHHccchH-HHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHh
Confidence             233345544 45555322 1 45554433332221211                 0    111111 111        1


Q ss_pred             --cCCHHHHHHHHhc----------CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHH
Q 009568          370 --AGLVGPLVNLLQN----------AEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEG  437 (532)
Q Consensus       370 --~~~i~~L~~ll~~----------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~  437 (532)
                        ..++..|+.+|.+          .++.+..-||.=|+.++.. .|+....+-+.|+-..++.++.++|++|+..||.|
T Consensus       392 ~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~-~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~a  470 (480)
T 1ho8_A          392 DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVEL-LPESIDVLDKTGGKADIMELLNHSDSRVKYEALKA  470 (480)
T ss_dssp             GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHH-CTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHH-CcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHH
Confidence              1247889999973          3678888899999999886 34666666677999999999999999999999999


Q ss_pred             HHHHHHh
Q 009568          438 LENILKV  444 (532)
Q Consensus       438 L~~l~~~  444 (532)
                      +..++..
T Consensus       471 vQklm~~  477 (480)
T 1ho8_A          471 TQAIIGY  477 (480)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998753

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.21  E-value=4.6e-05  Score=84.23  Aligned_cols=335  Identities=9%  Similarity=0.032  Sum_probs=174.9

Q ss_pred             CCChHHHHHHHHHHHHHhcCCC--CCchhHh-hhCCcHHH----HHHhhcCC--CCHHHHHHHHHHHHHHhcCChhhHHH
Q 009568           85 SDDSSLQLEATTQFRKLLSIER--SPPIEEV-IQSGVVPR----FVEFLMRE--DYPQLQFEAAWALTNIASGTSENTKV  155 (532)
Q Consensus        85 s~~~~~~~~a~~~l~~l~~~~~--~~~~~~~-i~~g~i~~----Lv~lL~~~--~~~~~~~~a~~~L~~l~~~~~~~~~~  155 (532)
                      ++++..+..|+.++..++.+..  ..+.... ....+.+.    ++..|.++  .++.+|..|+|+++.++..-.  ...
T Consensus       416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--~~~  493 (960)
T 1wa5_C          416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--KAQ  493 (960)
T ss_dssp             --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--HHH
T ss_pred             chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--HHH
Confidence            5667788889999998875321  1011000 00022232    23334555  139999999999999987421  111


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-------chh-HHHHHh--cCChHHHHHHhhhh----hhhHHHH
Q 009568          156 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS-------PRC-RDLVLS--QGALIPLLAQLNER----AKLSMLR  221 (532)
Q Consensus       156 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-------~~~-~~~~~~--~~~l~~L~~ll~~~----~~~~~~~  221 (532)
                      +  ..+++.++..|.+++..++..|+++|.+++...       +.+ +..+..  ..++..|+.++...    .+.....
T Consensus       494 l--~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e  571 (960)
T 1wa5_C          494 L--IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENE  571 (960)
T ss_dssp             H--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCH
T ss_pred             H--HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccH
Confidence            1  245688888888888999999999999998631       111 111110  11344445555332    1111223


Q ss_pred             HHHHHhhhccCCCCCCCcccccchHHHHHHhhc-----CCCHHHHHHHHHHHHHhccC-ChhHHHHHHHhCchHHHHHhh
Q 009568          222 NATWTLSNFCRGKPQPPFDQVRPALPALAQLVH-----SNDEEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELL  295 (532)
Q Consensus       222 ~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~-----~~d~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~lL  295 (532)
                      .++.++..++......-......+++.|...+.     .++......++.+++.++.. .++... -+...++|.+...|
T Consensus       572 ~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~-~~~~~~~p~~~~iL  650 (960)
T 1wa5_C          572 FLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLP-LLVDSMMPTFLTVF  650 (960)
T ss_dssp             HHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHH-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHH-HHHHHHHHHHHHHH
Confidence            444444444332211112233445555555443     23667777888888888765 333333 33446788888888


Q ss_pred             CCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHH--HHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCH
Q 009568          296 GHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLL--GLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLV  373 (532)
Q Consensus       296 ~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~--~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i  373 (532)
                      ......+...++.+++.+..........+.  .+++.+.  ..+...   ......+.+|.++....++.+.. ++ .++
T Consensus       651 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~--~~~~~l~~~~~~~~~---~~~~~~~~~L~~~~~~~~~~~~~-~~-~~l  723 (960)
T 1wa5_C          651 SEDIQEFIPYVFQIIAFVVEQSATIPESIK--PLAQPLLAPNVWELK---GNIPAVTRLLKSFIKTDSSIFPD-LV-PVL  723 (960)
T ss_dssp             HTTCTTTHHHHHHHHHHHHHHCSSCCTTTG--GGHHHHTSGGGGCCT---TTHHHHHHHHHHHHHHHGGGCSC-SH-HHH
T ss_pred             HhhhHhhHHHHHHHHHHHHHhccCCCHHHH--HHHHHHcCHHHhcCC---CCchhHHHHHHHHHHhChHHHHH-HH-HHH
Confidence            776667888888888887754321111111  2334444  333332   23334555666654311110000 00 012


Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHHhhcCCCHH-HHHHHHHcCChHHHHhhcCCC-CHHHHHHHH
Q 009568          374 GPLVNLLQNAEFDIKKEAAWAISNATSGGTHE-QIKYLVREGCIKPLCDLFVCP-DPRIVTVCL  435 (532)
Q Consensus       374 ~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~-~~~~l~~~~~l~~L~~lL~~~-d~~v~~~al  435 (532)
                      ..+..++.+..  ....+.+++..++...... ...++-.  +++.++..+... .++++...+
T Consensus       724 ~~~~~~~~~~~--~~~~a~~ll~~i~~~~~~~~~~~yl~~--i~~~l~~~l~~~~~~~~~~~~l  783 (960)
T 1wa5_C          724 GIFQRLIASKA--YEVHGFDLLEHIMLLIDMNRLRPYIKQ--IAVLLLQRLQNSKTERYVKKLT  783 (960)
T ss_dssp             HHHHHHHTCTT--THHHHHHHHHHHHHHSCHHHHGGGHHH--HHHHHHHGGGSSCCHHHHHHHH
T ss_pred             HHHHHHhCCCc--ccchHHHHHHHHHHHCCHHHHHHHHHH--HHHHHHHHHhhCCcHhHHHHHH
Confidence            22333333333  2378888888887755544 3333322  566666666544 355543333

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=98.20  E-value=0.00031  Score=78.33  Aligned_cols=340  Identities=10%  Similarity=0.090  Sum_probs=182.3

Q ss_pred             CChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC--hh---hHHHHHh--
Q 009568           86 DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGT--SE---NTKVVID--  158 (532)
Q Consensus        86 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~--~~---~~~~i~~--  158 (532)
                      ++..++..++.++...++   ..+...+.+..+++.+.+.+.. + ++++..|+.||..+....  +.   ....+..  
T Consensus       207 ~~~~~~~~aL~~l~~~l~---wi~~~~~~~~~ll~~l~~~~l~-~-~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~  281 (1049)
T 3m1i_C          207 SSSSLIVATLESLLRYLH---WIPYRYIYETNILELLSTKFMT-S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFF  281 (1049)
T ss_dssp             CCHHHHHHHHHHHHHHTT---TSCTHHHHSSSHHHHHHTHHHH-S-HHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHh---hCCHHHHhhhhHHHHHHHHhCC-C-HhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHH
Confidence            346678888888888776   2344556667788888843332 4 899999999999998642  21   1111110  


Q ss_pred             CCChHHHHH-hh-------------CCCCHHHHHHHHHHHHHhhC-------CCchhHHHHHhcCChHHHHHHhhhhhhh
Q 009568          159 HGAVPIFVK-LL-------------ASPSDDVREQAVWALGNVAG-------DSPRCRDLVLSQGALIPLLAQLNERAKL  217 (532)
Q Consensus       159 ~g~i~~L~~-lL-------------~~~~~~v~~~a~~~L~nl~~-------~~~~~~~~~~~~~~l~~L~~ll~~~~~~  217 (532)
                      .+.+..+.. ++             ...+.+.....+..+..+..       ..+..+..+  ..+++.++... ...+.
T Consensus       282 ~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~-~~~d~  358 (1049)
T 3m1i_C          282 QNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLS-KIEER  358 (1049)
T ss_dssp             HHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHH-TSSCH
T ss_pred             HHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHH-cCCcH
Confidence            112222211 11             12234444445544443321       111112211  12344445444 34467


Q ss_pred             HHHHHHHHHhhhccC----CCCCCC--cccccchHHHHHHhhcCC-------------------CH---HHHHHHHHHHH
Q 009568          218 SMLRNATWTLSNFCR----GKPQPP--FDQVRPALPALAQLVHSN-------------------DE---EVLTDACWALS  269 (532)
Q Consensus       218 ~~~~~a~~~L~~L~~----~~~~~~--~~~~~~~l~~L~~lL~~~-------------------d~---~v~~~a~~~L~  269 (532)
                      ++...++..+..++.    .+....  ......+++.++..+..+                   |.   .....+..+|.
T Consensus       359 ~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~  438 (1049)
T 3m1i_C          359 ELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLV  438 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHH
Confidence            778888877777776    321111  112234444544444221                   11   11223444555


Q ss_pred             HhccCChhHHHHHHHhCchHHHHHhhC--CCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcC-----CCc
Q 009568          270 YLSDGTNDKIQAVIEAGVCPRLVELLG--HPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH-----SHK  342 (532)
Q Consensus       270 ~l~~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~-----~~~  342 (532)
                      .++......   ++ .-+.+.+-..+.  ..+|..+..+++++|.++.+.......-.-..+++.+..+...     + .
T Consensus       439 ~l~~~~~~~---~l-~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~-~  513 (1049)
T 3m1i_C          439 YLTHLNVID---TE-EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDN-K  513 (1049)
T ss_dssp             HHHHHCHHH---HH-HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHH-H
T ss_pred             HHHccCHHH---HH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccc-h
Confidence            554222211   11 122344444454  3577889999999999986544321111112345555554332     2 4


Q ss_pred             hhHHHHHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHH--------HHHH
Q 009568          343 KSIKKEACWTISNITA---GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQI--------KYLV  411 (532)
Q Consensus       343 ~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~--------~~l~  411 (532)
                      +.++..++|+++.++.   ..+.....     +++.++..+.++++.|+..|++++.+++........        .++ 
T Consensus       514 ~~v~~~~~~~lgry~~~~~~~~~~l~~-----vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~-  587 (1049)
T 3m1i_C          514 AVVASDIMYVVGQYPRFLKAHWNFLRT-----VILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFI-  587 (1049)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHH-
Confidence            5566679999998774   23332222     567788888888899999999999999985433221        221 


Q ss_pred             HcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 009568          412 REGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG  445 (532)
Q Consensus       412 ~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~  445 (532)
                       ..++..+..++..-+.+-...+.+++..++...
T Consensus       588 -~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~  620 (1049)
T 3m1i_C          588 -QTIIRDIQKTTADLQPQQVHTFYKACGIIISEE  620 (1049)
T ss_dssp             -HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTC
T ss_pred             -HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcC
Confidence             124455555555555555666777877777654

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.18  E-value=5.2e-05  Score=81.50  Aligned_cols=298  Identities=15%  Similarity=0.143  Sum_probs=199.6

Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCC--CCCcccc
Q 009568          165 FVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP--QPPFDQV  242 (532)
Q Consensus       165 L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~--~~~~~~~  242 (532)
                      +++.+...+..-+..++..++++.......+  ....+++..+.+.+....+.   +.++.++..||....  .+.....
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~~~~~e~~~   93 (986)
T 2iw3_A           19 LFQKLSVATADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA---ANAMQAVAHIANQSNLSPSVEPYI   93 (986)
T ss_dssp             HHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTCCTTTHHHH
T ss_pred             HHhhccccchhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH---HHHHHHHHHHHHhcCCCCCcccch
Confidence            4444443222333456666666654321111  11124566677777433333   889999999997652  2233344


Q ss_pred             cchHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh-hHHHHHHHhCchHHHHHhhCCC-CccchhhHHHHHHHhhcCCcch
Q 009568          243 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLGHP-SPSVLIPALRTVGNIVTGDDFQ  320 (532)
Q Consensus       243 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~al~~L~nl~~~~~~~  320 (532)
                      -+.+|.++....+....|+..|-.++..+...-+ ...     ..++|.|+..|.+. .|..+..|+.+++.++...+.+
T Consensus        94 ~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~  168 (986)
T 2iw3_A           94 VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQ  168 (986)
T ss_dssp             HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHH
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHH
Confidence            5677888888888888999888888777664332 222     35788888888654 6999999999999999765544


Q ss_pred             hHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009568          321 TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA--GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNA  398 (532)
Q Consensus       321 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl  398 (532)
                      ...-+. .++|.+...+.+. .++|++.|..++..+|.  +|.+ +     ...+|.|+..+.+++.  ..++...|+.-
T Consensus       169 ~~~~~~-~~~p~~~~~~~d~-k~~v~~~~~~~~~~~~~~~~n~d-~-----~~~~~~~~~~~~~p~~--~~~~~~~l~~~  238 (986)
T 2iw3_A          169 VALRMP-ELIPVLSETMWDT-KKEVKAAATAAMTKATETVDNKD-I-----ERFIPSLIQCIADPTE--VPETVHLLGAT  238 (986)
T ss_dssp             HHHHHH-HHHHHHHHHTTCS-SHHHHHHHHHHHHHHGGGCCCTT-T-----GGGHHHHHHHHHCTTH--HHHHHHHHTTC
T ss_pred             HHHhcc-chhcchHhhcccC-cHHHHHHHHHHHHHHHhcCCCcc-h-----hhhHHHHHHHhcChhh--hHHHHHHhhcC
Confidence            433333 6889999999988 99999999999999986  4444 1     2368999999987632  45566666555


Q ss_pred             hcCC--CHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHH
Q 009568          399 TSGG--THEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIEN  476 (532)
Q Consensus       399 ~~~~--~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~  476 (532)
                      +...  +......     .+|.|..-|......+.+.+.-++.|+++.-+...       ...+|...     .++.++.
T Consensus       239 tfv~~v~~~~l~~-----~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~-------~~~~f~~~-----l~p~~~~  301 (986)
T 2iw3_A          239 TFVAEVTPATLSI-----MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQ-------VIAPFLGK-----LLPGLKS  301 (986)
T ss_dssp             CCCSCCCHHHHHH-----HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHH-------HHHHHHTT-----THHHHHH
T ss_pred             eeEeeecchhHHH-----HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHH-------HHhhhhhh-----hhhHHHH
Confidence            4432  2222222     46777778888888899999999999998766543       23444443     4567776


Q ss_pred             H-hcCCCHHHHHHHHHHHHHhCCC
Q 009568          477 L-QSHDNNEIYEKAVKILETYWLE  499 (532)
Q Consensus       477 L-~~~~~~~v~~~a~~il~~~~~~  499 (532)
                      . ....+|++++.|...++.+...
T Consensus       302 ~~~~~~~pe~r~~~~~a~~~l~~~  325 (986)
T 2iw3_A          302 NFATIADPEAREVTLRALKTLRRV  325 (986)
T ss_dssp             HTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred             HhhccCCHHHHHHHHHHHHHHHHh
Confidence            4 5789999998888888777543

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=98.14  E-value=6.8e-05  Score=83.05  Aligned_cols=331  Identities=12%  Similarity=0.068  Sum_probs=173.5

Q ss_pred             HHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCh--hhHHHH---Hh--CCC
Q 009568           89 SLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTS--ENTKVV---ID--HGA  161 (532)
Q Consensus        89 ~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~--~~~~~i---~~--~g~  161 (532)
                      .+...++.++...+... . ..  .....+++.+.+++.  + ++++..|+.++..+.....  .....+   +.  .+.
T Consensus       217 ~~~~~~l~~l~~wi~~~-~-~~--~~~~~ll~~l~~~l~--~-~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~  289 (963)
T 2x19_B          217 CVRQKVLKCFSSWVQLE-V-PL--QDCEALIQAAFAALQ--D-SELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGL  289 (963)
T ss_dssp             HHHHHHHHHHHHHHTSS-C-CG--GGTHHHHHHHHHHTT--S-TTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCC-C-Cc--ccchHHHHHHHHHhC--C-chHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhh
Confidence            36666777776655421 1 11  122456787887774  3 6789999999999987431  111111   11  011


Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHH----h----cCChHHHHHHhhh----hhhhHHHHHHHHHhhh
Q 009568          162 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVL----S----QGALIPLLAQLNE----RAKLSMLRNATWTLSN  229 (532)
Q Consensus       162 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~----~----~~~l~~L~~ll~~----~~~~~~~~~a~~~L~~  229 (532)
                      .+.+...+...+.......+.++..++...+   ..+.    .    ...+..++.+...    ..+..+...++..+..
T Consensus       290 ~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~---~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~  366 (963)
T 2x19_B          290 QEQLRQAVQNGDMETSHGICRIAVALGENHS---RALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYT  366 (963)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH---HHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhH---HHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHH
Confidence            2222222333455555555566665543211   1111    0    1223334443322    1244455555555555


Q ss_pred             ccCCCCCC-------Cc----ccccchHHHHHHhhcCCCHH---------------HHHHHHHHHHHhccCChhHHHHHH
Q 009568          230 FCRGKPQP-------PF----DQVRPALPALAQLVHSNDEE---------------VLTDACWALSYLSDGTNDKIQAVI  283 (532)
Q Consensus       230 L~~~~~~~-------~~----~~~~~~l~~L~~lL~~~d~~---------------v~~~a~~~L~~l~~~~~~~~~~~~  283 (532)
                      ++......       ..    .....+++.++..+..+++.               .+..+..+|..++......   ++
T Consensus       367 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~---~l  443 (963)
T 2x19_B          367 LQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAE---LL  443 (963)
T ss_dssp             HHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHH---HH
T ss_pred             HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHH---HH
Confidence            55421000       00    11123344444444322211               1233333443333211100   11


Q ss_pred             HhCchHHHHHhh----CCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHh---cCCCchhHHHHHHHHHHHH
Q 009568          284 EAGVCPRLVELL----GHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLL---THSHKKSIKKEACWTISNI  356 (532)
Q Consensus       284 ~~~~l~~L~~lL----~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL---~~~~~~~v~~~a~~~L~nl  356 (532)
                       .-+++.+...+    .+.++..+..++++++.++.+.....     ...++.++..+   ..+ ++.++..++|+++.+
T Consensus       444 -~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~-~~~vr~~~~~~l~~~  516 (963)
T 2x19_B          444 -SNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISIS-NVQLADTVMFTIGAL  516 (963)
T ss_dssp             -HHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCC-SHHHHHHHHHHHHHT
T ss_pred             -HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCC-cHHHHHHHHHHHHHH
Confidence             12233344444    55678889999999999998765321     12344444443   334 678999999999998


Q ss_pred             hcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCC--CCHHHHHHH
Q 009568          357 TAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC--PDPRIVTVC  434 (532)
Q Consensus       357 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~--~d~~v~~~a  434 (532)
                      +..-.... ..+ ..+++.++..|.+  +.|+..|++++.+++.........++  ..++..|..++..  -+.+.+..+
T Consensus       517 ~~~l~~~~-~~l-~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~--~~il~~l~~~l~~~~~~~~~~~~~  590 (963)
T 2x19_B          517 SEWLADHP-VMI-NSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYA--ANIVAVSQDVLMKQIHKTSQCMWL  590 (963)
T ss_dssp             HHHHHHCH-HHH-TTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH--HHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred             HHHHHhCH-HHH-HHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHhccCCCChHHHHHH
Confidence            75211111 222 3588888888854  89999999999999864332222221  1245555666654  356788889


Q ss_pred             HHHHHHHHHhh
Q 009568          435 LEGLENILKVG  445 (532)
Q Consensus       435 l~~L~~l~~~~  445 (532)
                      ++++..++...
T Consensus       591 ~eai~~i~~~~  601 (963)
T 2x19_B          591 MQALGFLLSAL  601 (963)
T ss_dssp             HHHHHHHHTTS
T ss_pred             HHHHHHHHhcC
Confidence            99999998644

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.13  E-value=4.9e-05  Score=84.26  Aligned_cols=290  Identities=10%  Similarity=0.071  Sum_probs=161.0

Q ss_pred             HHHHHHHHHHHHHhcCCh-hhHHHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHH
Q 009568          133 QLQFEAAWALTNIASGTS-ENTKVVIDHGAVPIFVKLLAS-----PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIP  206 (532)
Q Consensus       133 ~~~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~  206 (532)
                      ..|..+..+|..++.... .....+     ++.+-..+.+     .+...++.++++++.++.......     ...++.
T Consensus       436 ~~R~~~~~~l~~~~~~~~~~~l~~~-----~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~  505 (971)
T 2x1g_F          436 CYRQDISDTFMYCYDVLNDYILEIL-----AAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE-----KRQIPR  505 (971)
T ss_dssp             HHHHHHHHHHHHHHTTCTTHHHHHH-----HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh-----hHHHHH
Confidence            355666667777665332 222222     2333333332     577899999999999976543211     123444


Q ss_pred             HHHHhh--h--hhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHH
Q 009568          207 LLAQLN--E--RAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAV  282 (532)
Q Consensus       207 L~~ll~--~--~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~  282 (532)
                      ++.++.  .  +.++.++..++|+++.++..-.. .......+++.++..+ +  +.++..|++++.+++..........
T Consensus       506 l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~-~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~  581 (971)
T 2x1g_F          506 LMRVLAEIPYEKLNVKLLGTALETMGSYCNWLME-NPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPY  581 (971)
T ss_dssp             HHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             HHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhcccc
Confidence            444331  1  23788999999999999875321 1245677888888888 2  7899999999999997655444433


Q ss_pred             HHhCchHHHHHhhCCC--CccchhhHHHHHHHhhcCCc-chhHHHhhcCchHHHH----HHhcCCC-chhHHHHHHHHHH
Q 009568          283 IEAGVCPRLVELLGHP--SPSVLIPALRTVGNIVTGDD-FQTQCIITYGALPYLL----GLLTHSH-KKSIKKEACWTIS  354 (532)
Q Consensus       283 ~~~~~l~~L~~lL~~~--~~~v~~~al~~L~nl~~~~~-~~~~~~~~~~~l~~L~----~lL~~~~-~~~v~~~a~~~L~  354 (532)
                      ++ .++..+..++..+  +...+..++.+++.++...+ ......+. .+++.++    .++.... ++..+.....++.
T Consensus       582 ~~-~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~  659 (971)
T 2x1g_F          582 AD-PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLN  659 (971)
T ss_dssp             HH-HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            33 5666777777663  45678888999999886432 22222222 2333333    3333321 2223444444444


Q ss_pred             HHh---c--CC-----------HHHHHHHHHcCCHHHHHHHHhcC--chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCCh
Q 009568          355 NIT---A--GN-----------RDQIQAVIDAGLVGPLVNLLQNA--EFDIKKEAAWAISNATSGGTHEQIKYLVREGCI  416 (532)
Q Consensus       355 nl~---~--~~-----------~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l  416 (532)
                      .++   .  +.           ++.+..+. ..+++.+..++...  +..+.+.+++++..++..-..+...++-  .++
T Consensus       660 ~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~--~~~  736 (971)
T 2x1g_F          660 MISTLFSSLNTDVDEQATDQPIVQPVLLVM-QRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQ--DLC  736 (971)
T ss_dssp             HHHHHHHHHTC-------------CCHHHH-HTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHH--HHH
T ss_pred             HHHHHHhhcCCCcCcccccccCCCchHHHH-HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHH--HHH
Confidence            443   2  11           11112222 34788888877643  6789999999999976521111112211  134


Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 009568          417 KPLCDLFVCPDPRIVTVCLEGLENILKV  444 (532)
Q Consensus       417 ~~L~~lL~~~d~~v~~~al~~L~~l~~~  444 (532)
                      +.|...+.....   ..+++.+..++..
T Consensus       737 ~~l~~~~~~~~~---~~~l~l~~~~i~~  761 (971)
T 2x1g_F          737 LFIVASFQTRCC---APTLEISKTAIVM  761 (971)
T ss_dssp             HHHHHHCC--CC---HHHHHHHHHHHTT
T ss_pred             HHHHHHHhcCCc---hHHHHHHHHHHHH
Confidence            455555544222   2366777766653

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=98.13  E-value=0.00014  Score=80.52  Aligned_cols=339  Identities=13%  Similarity=0.102  Sum_probs=188.4

Q ss_pred             cCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh---CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCC
Q 009568          127 MREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL---ASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGA  203 (532)
Q Consensus       127 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL---~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~  203 (532)
                      .+.+ ...+..++++++.++.+-.+..     ...++.++..+   .++++.++..++|+++.++..-.... .. -..+
T Consensus       459 ~~~~-w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~-l~~v  530 (963)
T 2x19_B          459 EPYS-WQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VM-INSV  530 (963)
T ss_dssp             CSCC-HHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HH-HTTT
T ss_pred             CCCc-hHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HH-HHHH
Confidence            3444 6889999999999998543311     12334444433   33578899999999999874311111 12 2356


Q ss_pred             hHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCC--CHHHHHHHHHHHHHhccCCh-hHHH
Q 009568          204 LIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN--DEEVLTDACWALSYLSDGTN-DKIQ  280 (532)
Q Consensus       204 l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~l~~~~~-~~~~  280 (532)
                      ++.++..+ .+  +.++..|++++.++|......-......++..+..++...  +...+..++.+++.++...+ +...
T Consensus       531 l~~l~~~l-~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~  607 (963)
T 2x19_B          531 LPLVLHAL-GN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL  607 (963)
T ss_dssp             HHHHHHHT-TC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHh-CC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence            77788777 33  7899999999999997542222223355666666666652  56788888999999876443 3333


Q ss_pred             HHHHhCchHHHHHhh----CCC-Cccchh---hHHHHHHHhhcCCcc---------------------hhHHHhhcCchH
Q 009568          281 AVIEAGVCPRLVELL----GHP-SPSVLI---PALRTVGNIVTGDDF---------------------QTQCIITYGALP  331 (532)
Q Consensus       281 ~~~~~~~l~~L~~lL----~~~-~~~v~~---~al~~L~nl~~~~~~---------------------~~~~~~~~~~l~  331 (532)
                      ..++ .+++.+...+    ..+ ++..+.   ..+.+|+.++..-..                     ..-..+-..+++
T Consensus       608 ~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  686 (963)
T 2x19_B          608 KNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQ  686 (963)
T ss_dssp             HHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHH
Confidence            3333 3444444443    222 333332   445555555432110                     001112224566


Q ss_pred             HHHHHhcC-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH----hcC-chhHHHHHHHHHHHhhc--CCC
Q 009568          332 YLLGLLTH-SHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLL----QNA-EFDIKKEAAWAISNATS--GGT  403 (532)
Q Consensus       332 ~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll----~~~-~~~v~~~a~~aL~nl~~--~~~  403 (532)
                      .+..++.. ..++.+...+|.+++.++..-.+...     .++|.++..+    ... .+    ..++.++.++.  +..
T Consensus       687 ~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~-----~~l~~~~~~l~~~~~~~~~~----~~l~l~~~li~~f~~~  757 (963)
T 2x19_B          687 LIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA-----PMVPQLCEMLGRMYSTIPQA----SALDLTRQLVHIFAHE  757 (963)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTG-----GGHHHHHHHHHHHHHHSCCH----HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhccCchHHHHHHHHHHHHHHHhhccccc-----ccHHHHHHHHHHHHHcCCcc----HHHHHHHHHHHHhCCC
Confidence            66666642 11568899999999987642111111     1234433332    221 22    34444444443  222


Q ss_pred             H---HHHHHHHHcCChHHHHhhcC---CCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchH-HHHHHHHhccHHHHHH
Q 009568          404 H---EQIKYLVREGCIKPLCDLFV---CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQ-YAQLVEEAEGLEKIEN  476 (532)
Q Consensus       404 ~---~~~~~l~~~~~l~~L~~lL~---~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~l~~  476 (532)
                      .   ..+..+.+ .++..+..++.   ..+++++......+..++......--.      ... +...      ++.+..
T Consensus       758 ~~~~~~~~~~l~-~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~------~~~~~~~i------~~~~~~  824 (963)
T 2x19_B          758 PAHFPPIEALFL-LVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLC------ERLDVKAV------FQCAVL  824 (963)
T ss_dssp             TTTCHHHHHHHH-HHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGC------TTSCHHHH------HHHHHH
T ss_pred             cchHHHHHHHHH-HHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcC------CcccHHHH------HHHHHH
Confidence            1   12222111 12333333333   246899999999999999876543210      011 2222      233334


Q ss_pred             HhcCCCHHHHHHHHHHHHHhCCC
Q 009568          477 LQSHDNNEIYEKAVKILETYWLE  499 (532)
Q Consensus       477 L~~~~~~~v~~~a~~il~~~~~~  499 (532)
                      ...+++..+...|.+++..++..
T Consensus       825 ~l~~~~~~~~~~~l~~l~~l~~~  847 (963)
T 2x19_B          825 ALKFPEAPTVKASCGFFTELLPR  847 (963)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHGGG
T ss_pred             HcCCCCHHHHHHHHHHHHHHHhc
Confidence            45689999999999999988754

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=98.07  E-value=0.0013  Score=73.26  Aligned_cols=355  Identities=9%  Similarity=0.094  Sum_probs=188.4

Q ss_pred             cHHHHHhhhcCCChHHHHHHHHHHHHHhc---CCCCC--c--h-----hHhhh--CCcHHHHHHhhcCCCCHHHHHHHHH
Q 009568           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLS---IERSP--P--I-----EEVIQ--SGVVPRFVEFLMREDYPQLQFEAAW  140 (532)
Q Consensus        75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~---~~~~~--~--~-----~~~i~--~g~i~~Lv~lL~~~~~~~~~~~a~~  140 (532)
                      .++.+++.++ .++..+..++..|..+..   .-...  .  .     ..+..  ..+++.+..++....++.++..++.
T Consensus       139 ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~  217 (1049)
T 3m1i_C          139 FIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLE  217 (1049)
T ss_dssp             HHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             HHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            5788888886 444444445555554432   10010  0  0     11111  1234445555654444789999999


Q ss_pred             HHHHHhcCChhhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCC--ch---hHHHHHhcCChHHHHHHhh--
Q 009568          141 ALTNIASGTSENTKVVIDHGAVPIFVK-LLASPSDDVREQAVWALGNVAGDS--PR---CRDLVLSQGALIPLLAQLN--  212 (532)
Q Consensus       141 ~L~~l~~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~--~~---~~~~~~~~~~l~~L~~ll~--  212 (532)
                      ++.+...-.+  ...+.+...++.+.. ++  .++.++..|+.+|..+....  +.   ....+..  .++.++..+.  
T Consensus       218 ~l~~~l~wi~--~~~~~~~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~--l~~~~l~~l~~s  291 (1049)
T 3m1i_C          218 SLLRYLHWIP--YRYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL--FFQNTLQQIATS  291 (1049)
T ss_dssp             HHHHHTTTSC--THHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHH--HHHHHHHHHHHH
T ss_pred             HHHHHHhhCC--HHHHhhhhHHHHHHHHhC--CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHH--HHHHHHHHHHHh
Confidence            9988765222  233555667777773 44  37899999999999998552  21   1111111  1112222110  


Q ss_pred             ---------------hhhhhHHHHHHHHHhhhccCCC------CCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 009568          213 ---------------ERAKLSMLRNATWTLSNFCRGK------PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYL  271 (532)
Q Consensus       213 ---------------~~~~~~~~~~a~~~L~~L~~~~------~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l  271 (532)
                                     .+.+.+.....+..+..+....      +.........+++.++.+...++.++...++.....+
T Consensus       292 i~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l  371 (1049)
T 3m1i_C          292 VMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNL  371 (1049)
T ss_dssp             TCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred             hCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence                           1224445555555554332210      1001112345667777777777888888887666666


Q ss_pred             cc----C--ChhHHHHHHHhCchHHHHHhhCCCCc----------------------cchhhHHHHHHHhhcCCcchhHH
Q 009568          272 SD----G--TNDKIQAVIEAGVCPRLVELLGHPSP----------------------SVLIPALRTVGNIVTGDDFQTQC  323 (532)
Q Consensus       272 ~~----~--~~~~~~~~~~~~~l~~L~~lL~~~~~----------------------~v~~~al~~L~nl~~~~~~~~~~  323 (532)
                      +.    .  .......++. .+++.++..+..++.                      ..+..+..+|..++......   
T Consensus       372 ~~~l~~~~~~~~~~~~~l~-~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~---  447 (1049)
T 3m1i_C          372 VADLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVID---  447 (1049)
T ss_dssp             HHHHHHSTTCGGGGHHHHH-HHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHH---
T ss_pred             HHHHHhchhHHHHHHHHHH-HHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHH---
Confidence            54    1  1112222222 344555555533211                      11223444555555322211   


Q ss_pred             HhhcCchHHHHHHhcC-CCchhHHHHHHHHHHHHhcCCHHHHH-HHHHcCCHHHHHHHHhc-----CchhHHHHHHHHHH
Q 009568          324 IITYGALPYLLGLLTH-SHKKSIKKEACWTISNITAGNRDQIQ-AVIDAGLVGPLVNLLQN-----AEFDIKKEAAWAIS  396 (532)
Q Consensus       324 ~~~~~~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~-~l~~~~~i~~L~~ll~~-----~~~~v~~~a~~aL~  396 (532)
                      ++. -+++.+...+.. ..++..+..++|+++.++.+...... .++ ..+++.|..+...     +.+.++..++|+++
T Consensus       448 ~l~-~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l-~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lg  525 (1049)
T 3m1i_C          448 TEE-IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDLLDLTVKKRGKDNKAVVASDIMYVVG  525 (1049)
T ss_dssp             HHH-HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHH-HHHHHHHHHHHhhhccccchHHHHHHHHHHHH
Confidence            111 223444555543 22678899999999999864332211 211 1144455543321     24455657999999


Q ss_pred             HhhcC--CCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 009568          397 NATSG--GTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEA  447 (532)
Q Consensus       397 nl~~~--~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~  447 (532)
                      .++..  ..++...     .+++.++..+.++++.|+..|..++.+++.....
T Consensus       526 ry~~~~~~~~~~l~-----~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~  573 (1049)
T 3m1i_C          526 QYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY  573 (1049)
T ss_dssp             HCHHHHHHCHHHHH-----HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHhHHHHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            77642  1222222     2677888888888999999999999999986543

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.04  E-value=0.0001  Score=68.23  Aligned_cols=188  Identities=11%  Similarity=0.087  Sum_probs=141.7

Q ss_pred             HHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH-H
Q 009568          291 LVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVI-D  369 (532)
Q Consensus       291 L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~  369 (532)
                      ++..|.+.+...+..++.-|..+...+......++..+++..|+.+..+. +...+..+..++.++..+ ......++ .
T Consensus       123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~-v~Gm~gvvs~  200 (339)
T 3dad_A          123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLF-VDGMLGVVAH  200 (339)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTS-HHHHHHHHHC
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhc-cccccchhCC
Confidence            33444456667788899999996666667888999999999999999998 999999999999999875 44455555 4


Q ss_pred             cCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHH--------HcC--ChHHHHhhcC---CCCHHHHHHHHH
Q 009568          370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLV--------REG--CIKPLCDLFV---CPDPRIVTVCLE  436 (532)
Q Consensus       370 ~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~--------~~~--~l~~L~~lL~---~~d~~v~~~al~  436 (532)
                      ..+|..+..++.+.+..|.+.|+..|..++...+. ....+.        ..|  ..+.|+.+|.   ..|.++...++.
T Consensus       201 ~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~-~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt  279 (339)
T 3dad_A          201 SDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSEN-NAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT  279 (339)
T ss_dssp             HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcc-cchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence            45788888899888889999999999988876421 111111        112  3778899997   788999999999


Q ss_pred             HHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCC--CHHHHHH
Q 009568          437 GLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHD--NNEIYEK  488 (532)
Q Consensus       437 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~--~~~v~~~  488 (532)
                      .|..++...+...       .-..+...+++.|.-..+...+...  ++++...
T Consensus       280 LIN~lL~~apd~d-------~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q  326 (339)
T 3dad_A          280 LINKTLAALPDQD-------SFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ  326 (339)
T ss_dssp             HHHHHHHHCSSHH-------HHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred             HHHHHHhcCCChh-------HHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence            9999998766432       1334778889888888888876655  6666543

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=98.03  E-value=0.0003  Score=77.29  Aligned_cols=357  Identities=11%  Similarity=0.095  Sum_probs=191.4

Q ss_pred             cHHHHHhhhcCCChHHHHHHHHHHHHHhcC----CCC--Cc-h-----hHhhh--CCcHHHHHHhhcCCCCHHHHHHHHH
Q 009568           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSI----ERS--PP-I-----EEVIQ--SGVVPRFVEFLMREDYPQLQFEAAW  140 (532)
Q Consensus        75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~----~~~--~~-~-----~~~i~--~g~i~~Lv~lL~~~~~~~~~~~a~~  140 (532)
                      -++.+++.++++. .....++..|+.+...    ...  .. .     +.+..  ..+++.+..+|....++++...++.
T Consensus       139 ~l~dL~~~l~~~~-~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~  217 (1023)
T 4hat_C          139 FIPELIGSSSSSV-NVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLE  217 (1023)
T ss_dssp             HHHHHHHHTTTCH-HHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred             HHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            5677888876543 3344445555443221    101  11 0     11111  1244455555654444788888999


Q ss_pred             HHHHHhcCChhhHHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCC---c--hhHHHHHh--cCChHHH-----
Q 009568          141 ALTNIASGTSENTKVVIDHGAVPIFV-KLLASPSDDVREQAVWALGNVAGDS---P--RCRDLVLS--QGALIPL-----  207 (532)
Q Consensus       141 ~L~~l~~~~~~~~~~i~~~g~i~~L~-~lL~~~~~~v~~~a~~~L~nl~~~~---~--~~~~~~~~--~~~l~~L-----  207 (532)
                      ++.....-  -....+++.+.++.++ .+|.  ++.++..|+.+|..+.+..   +  .+...+..  .+.+..+     
T Consensus       218 ~l~s~l~W--I~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~  293 (1023)
T 4hat_C          218 SLLRYLHW--IPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVM  293 (1023)
T ss_dssp             HHHHHTTT--SCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHh--CCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99998762  2245677788899999 8884  6789999999999998632   2  12211111  0111111     


Q ss_pred             ------HHHhh--hhhhhHHHHHHHHHhhhccCCCCC-----CC-cccccchHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 009568          208 ------LAQLN--ERAKLSMLRNATWTLSNFCRGKPQ-----PP-FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSD  273 (532)
Q Consensus       208 ------~~ll~--~~~~~~~~~~a~~~L~~L~~~~~~-----~~-~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~  273 (532)
                            -..+.  ...+.+.....+.++..+......     +. ......++..|+.+-..+|.++...++..=..++.
T Consensus       294 p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~  373 (1023)
T 4hat_C          294 PVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVA  373 (1023)
T ss_dssp             CTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Confidence                  11111  223567777777777655543210     01 01111223355555556677776555543333332


Q ss_pred             ----C--ChhHHHHHHHhCchHHHHHhhCCCC---------ccc------------hhhHH-HHHHHhhcCCcchhHHHh
Q 009568          274 ----G--TNDKIQAVIEAGVCPRLVELLGHPS---------PSV------------LIPAL-RTVGNIVTGDDFQTQCII  325 (532)
Q Consensus       274 ----~--~~~~~~~~~~~~~l~~L~~lL~~~~---------~~v------------~~~al-~~L~nl~~~~~~~~~~~~  325 (532)
                          .  .......++. .+++.++..+..+.         ..+            ..... .+|..++.-....   ++
T Consensus       374 ~l~~e~~~~~~~~~~~~-~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~~---~~  449 (1023)
T 4hat_C          374 DLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVID---TE  449 (1023)
T ss_dssp             HHTTSTTTGGGGHHHHH-HHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHHH---HH
T ss_pred             HHHhchHHHHHHHHHHH-HHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHHH---HH
Confidence                1  0111111221 34555555555443         010            00011 2222222111100   11


Q ss_pred             hcCchHHHHHHhcCC-CchhHHHHHHHHHHHHhcCCH-HHHHHHHHcCCHHHHHHHHhc-----CchhHHHHHHHHHHHh
Q 009568          326 TYGALPYLLGLLTHS-HKKSIKKEACWTISNITAGNR-DQIQAVIDAGLVGPLVNLLQN-----AEFDIKKEAAWAISNA  398 (532)
Q Consensus       326 ~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~-~~~~~l~~~~~i~~L~~ll~~-----~~~~v~~~a~~aL~nl  398 (532)
                      . -+++.+...+.++ .+...+..++|+++.++.+-. +.-..++. .+++.|+.++..     ....++..++|+++.+
T Consensus       450 ~-~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~-~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry  527 (1023)
T 4hat_C          450 E-IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQY  527 (1023)
T ss_dssp             H-HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTC
T ss_pred             H-HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHH-HHHHHHHHhhhccccCcchHHHHHHHHHHHHHH
Confidence            1 1234444444432 278999999999999997543 32333333 277888888864     2345667888999987


Q ss_pred             hcCC--CHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 009568          399 TSGG--THEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEA  447 (532)
Q Consensus       399 ~~~~--~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~  447 (532)
                      +..-  .++..+.     ++..|...+..+++.+...|.+++.+|...+..
T Consensus       528 ~~wl~~~~~~L~~-----vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~  573 (1023)
T 4hat_C          528 PRFLKAHWNFLRT-----VILKLFEFMHETHEGVQDMACDTFIKIVQKCKY  573 (1023)
T ss_dssp             HHHHHHCHHHHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTH
T ss_pred             HHHHhccHHHHHH-----HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence            6531  2333332     567788888788899999999999999987654

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=98.02  E-value=1.4e-05  Score=87.73  Aligned_cols=345  Identities=11%  Similarity=0.033  Sum_probs=184.7

Q ss_pred             cCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC--hhhHHHHHhCCC
Q 009568           84 WSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGT--SENTKVVIDHGA  161 (532)
Q Consensus        84 ~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~i~~~g~  161 (532)
                      .+.++.++..++.++...++   ..+...++..++++.+.++|..   ++++..|+.||..+....  ++.+..++..=.
T Consensus       203 ~~~~~~l~~~~L~~l~s~i~---wi~~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~  276 (980)
T 3ibv_A          203 NAKNYGTVGLCLQVYAQWVS---WININLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNILN  276 (980)
T ss_dssp             HTTCHHHHHHHHHHHHHHTT---TSCHHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHh---hcCHHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHh
Confidence            34678888899999999987   4567778888899999999875   789999999999998733  333333332201


Q ss_pred             hHHHHHhhC--CCCHHHHHHHHHHHHHhhC------CCc-----hhHHH--HHhcCChHHHHHHhhhhhhhHHHHHHHHH
Q 009568          162 VPIFVKLLA--SPSDDVREQAVWALGNVAG------DSP-----RCRDL--VLSQGALIPLLAQLNERAKLSMLRNATWT  226 (532)
Q Consensus       162 i~~L~~lL~--~~~~~v~~~a~~~L~nl~~------~~~-----~~~~~--~~~~~~l~~L~~ll~~~~~~~~~~~a~~~  226 (532)
                      +...+..+.  ..+.++.+..+..+..++.      ..+     ..+..  -.-.+.++.++.++ .+++.++...++.+
T Consensus       277 L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~-~~~~deVs~~t~~F  355 (980)
T 3ibv_A          277 LNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYL-SDDYDETSTAVFPF  355 (980)
T ss_dssp             HHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHH-TCSSHHHHHTTHHH
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHh-CCCchhHHHHHHHH
Confidence            112222222  3566666555554443321      111     10100  11124677777777 44455666666655


Q ss_pred             hhhccCCC---CC--CCccc----ccchHHHHHHhhcCC-----CH-----------HHHHHHHHHHHHhc-cCChhHHH
Q 009568          227 LSNFCRGK---PQ--PPFDQ----VRPALPALAQLVHSN-----DE-----------EVLTDACWALSYLS-DGTNDKIQ  280 (532)
Q Consensus       227 L~~L~~~~---~~--~~~~~----~~~~l~~L~~lL~~~-----d~-----------~v~~~a~~~L~~l~-~~~~~~~~  280 (532)
                      +..+....   +.  .....    ...+++.+++-+..+     +.           +.|.... .+...+ .-.++..-
T Consensus       356 w~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l  434 (980)
T 3ibv_A          356 LSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFS  434 (980)
T ss_dssp             HHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHH
Confidence            55544321   11  11112    233334444333321     11           2333333 322222 11121111


Q ss_pred             HHHHhCchHHHHHhhC---CCCccchhhHHHHHHHhhcCCcchhHHH-hhc----CchHHHHHHhc-----CCCchhHHH
Q 009568          281 AVIEAGVCPRLVELLG---HPSPSVLIPALRTVGNIVTGDDFQTQCI-ITY----GALPYLLGLLT-----HSHKKSIKK  347 (532)
Q Consensus       281 ~~~~~~~l~~L~~lL~---~~~~~v~~~al~~L~nl~~~~~~~~~~~-~~~----~~l~~L~~lL~-----~~~~~~v~~  347 (532)
                      ..+-.-+.+.+...+.   +.+|..++.++.+|+.++.+........ -..    .+++.+..++.     .+ .+.|+.
T Consensus       435 ~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~-hp~V~~  513 (980)
T 3ibv_A          435 SYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHP-HPLVQL  513 (980)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCC-CHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCC-CHHHHH
Confidence            1000011222223342   2468889999999999998755322111 001    24455556654     45 789999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc------CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHh
Q 009568          348 EACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN------AEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCD  421 (532)
Q Consensus       348 ~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~  421 (532)
                      .++|+++..+.--..      +...++.++..+-+      ++.+|+..|+.++.+++.........++-  .++..+..
T Consensus       514 ~~~~~l~rys~~~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~--~il~~l~~  585 (980)
T 3ibv_A          514 LYMEILVRYASFFDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTE--SSLAMLGD  585 (980)
T ss_dssp             HHHHHHHHTGGGGGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHH--HHHHHTTG
T ss_pred             HHHHHHHHHHHHHhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHH--HHHHHHHH
Confidence            999999998862111      12345555555443      56789999999999998755332212211  13444444


Q ss_pred             hcCC-----CC----------------HHHHHHHHHHHHHHHHhh
Q 009568          422 LFVC-----PD----------------PRIVTVCLEGLENILKVG  445 (532)
Q Consensus       422 lL~~-----~d----------------~~v~~~al~~L~~l~~~~  445 (532)
                      +|..     .+                .+-+....+++..++...
T Consensus       586 lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~  630 (980)
T 3ibv_A          586 LLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSG  630 (980)
T ss_dssp             GGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHS
T ss_pred             hhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCC
Confidence            4442     11                123556778888888654

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.00  E-value=0.00012  Score=67.88  Aligned_cols=185  Identities=13%  Similarity=0.109  Sum_probs=136.3

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHh-
Q 009568          247 PALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCII-  325 (532)
Q Consensus       247 ~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~-  325 (532)
                      ..++.-|.+.+...+..++.-|..+...+.+....++..+++..|+......+..++..++++++++....+ ....++ 
T Consensus       121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~-Gm~gvvs  199 (339)
T 3dad_A          121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVD-GMLGVVA  199 (339)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHH-HHHHHHH
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccc-cccchhC
Confidence            345666677888889999999998665667788899999999999999999999999999999999997544 332333 


Q ss_pred             hcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH--------c--CCHHHHHHHHh---cCchhHHHHHH
Q 009568          326 TYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID--------A--GLVGPLVNLLQ---NAEFDIKKEAA  392 (532)
Q Consensus       326 ~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--------~--~~i~~L~~ll~---~~~~~v~~~a~  392 (532)
                      ....+..+..++.+. ...|.+.|...|-.++..++.....+.+        .  ..++.|+.+|+   ..+.+++..|.
T Consensus       200 ~~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am  278 (339)
T 3dad_A          200 HSDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV  278 (339)
T ss_dssp             CHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence            556888999999976 8999999999999998754322222211        1  24788999997   66899999998


Q ss_pred             HHHHHhhcCCC-HH----HHHHHHHcCChHHHHhhcCCC--CHHHHHH
Q 009568          393 WAISNATSGGT-HE----QIKYLVREGCIKPLCDLFVCP--DPRIVTV  433 (532)
Q Consensus       393 ~aL~nl~~~~~-~~----~~~~l~~~~~l~~L~~lL~~~--d~~v~~~  433 (532)
                      ..|..+..+.+ .+    ....+-+.|+-..+...++..  |++++..
T Consensus       279 tLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q  326 (339)
T 3dad_A          279 TLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ  326 (339)
T ss_dssp             HHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence            88877766544 23    233344556555666667654  6665543

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=97.69  E-value=0.0067  Score=66.61  Aligned_cols=296  Identities=13%  Similarity=0.124  Sum_probs=160.3

Q ss_pred             CCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHH-HHhhcCCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHh--CC
Q 009568           85 SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRF-VEFLMREDYPQLQFEAAWALTNIASGT-SENTKVVID--HG  160 (532)
Q Consensus        85 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~L-v~lL~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~--~g  160 (532)
                      +.++.+...++.+++.+++   --++..+++.++++.+ ..+|.  + +.++..|+.||+.+.... ++....+..  .+
T Consensus       218 ~~~~~lv~~~L~~L~~~~s---WI~i~~i~~~~ll~~L~~~~L~--~-~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~  291 (1073)
T 3gjx_A          218 SQNAPLVHATLETLLRFLN---WIPLGYIFETKLISTLIYKFLN--V-PMFRNVSLKCLTEIAGVSVSQYEEQFETLFTL  291 (1073)
T ss_dssp             CCCHHHHHHHHHHHHHHTT---TSCTHHHHSSSHHHHHHHHTSS--S-HHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHH---hcCHHHhccchHHHHHHHHhcC--C-hHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            4567777788899998886   4577888899999988 46664  3 789999999999998743 222222211  11


Q ss_pred             ChHHHHHhh-------------CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhc-C-------ChHHHHHHhhhhhhhHH
Q 009568          161 AVPIFVKLL-------------ASPSDDVREQAVWALGNVAGDSPRCRDLVLSQ-G-------ALIPLLAQLNERAKLSM  219 (532)
Q Consensus       161 ~i~~L~~lL-------------~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~-~-------~l~~L~~ll~~~~~~~~  219 (532)
                      ++..+..++             ...+.+.....+.++..+...   ....+... +       ++..++.+- ..++.++
T Consensus       292 ~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~---~~~lIe~~p~~~~~l~~~l~~ll~~s-~~~d~ei  367 (1073)
T 3gjx_A          292 TMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKE---HGQLLEKRLNLREALMEALHYMLLVS-EVEETEI  367 (1073)
T ss_dssp             HHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHH---HHHHHHHCGGGHHHHHHHHHHHHHHT-TCSCHHH
T ss_pred             HHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHH---HHHHHhcCccchHHHHHHHHHHHHHh-CCCcHHH
Confidence            122121222             112234445555555554321   11122111 1       122233332 4457788


Q ss_pred             HHHHHHHhhhccCCC----CC----C-------------CcccccchHHHHHH----hhcCCC-----------------
Q 009568          220 LRNATWTLSNFCRGK----PQ----P-------------PFDQVRPALPALAQ----LVHSND-----------------  257 (532)
Q Consensus       220 ~~~a~~~L~~L~~~~----~~----~-------------~~~~~~~~l~~L~~----lL~~~d-----------------  257 (532)
                      ...+...+..|...-    +.    .             ......+++..|..    -+..++                 
T Consensus       368 ~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~  447 (1073)
T 3gjx_A          368 FKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFM  447 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHH
Confidence            887777666554321    10    0             00112233333333    222111                 


Q ss_pred             ---H-----HHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCC--CCccchhhHHHHHHHhhcCCcchhH-HHhh
Q 009568          258 ---E-----EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH--PSPSVLIPALRTVGNIVTGDDFQTQ-CIIT  326 (532)
Q Consensus       258 ---~-----~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~al~~L~nl~~~~~~~~~-~~~~  326 (532)
                         .     .+..+++..+.++.  ..+...     -+++.+...+..  .+|.....+++++|.++..-..... .++-
T Consensus       448 ~d~~~~~ly~~mrd~L~~lt~l~--~~~~~~-----i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp  520 (1073)
T 3gjx_A          448 KDTDSINLYKNMRETLVYLTHLD--YVDTEI-----IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLV  520 (1073)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHC--HHHHHH-----HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred             hhcchHHHHHHHHHHHHHHhcCC--HHHHHH-----HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHH
Confidence               1     12222332222221  111111     123444444443  4578899999999999854332222 2222


Q ss_pred             cCchHHHHHHhcCCC----chhHHHHHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhh
Q 009568          327 YGALPYLLGLLTHSH----KKSIKKEACWTISNITA---GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNAT  399 (532)
Q Consensus       327 ~~~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~  399 (532)
                       .+++.|+.+..+..    ...++...+|++|..+.   .+++....     ++..|+..+...++.|+..|+.|+..++
T Consensus       521 -~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~-----vl~~L~~~m~~~~~~vq~aA~~af~~i~  594 (1073)
T 3gjx_A          521 -TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT-----VVNKLFEFMHETHDGVQDMACDTFIKIA  594 (1073)
T ss_dssp             -HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTCCSTTHHHHHHHHHHHHH
T ss_pred             -HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence             45666666665431    23456667899998765   34444333     4567888888889999999999999998


Q ss_pred             cCCC
Q 009568          400 SGGT  403 (532)
Q Consensus       400 ~~~~  403 (532)
                      ..+.
T Consensus       595 ~~C~  598 (1073)
T 3gjx_A          595 QKCR  598 (1073)
T ss_dssp             HHTG
T ss_pred             HHHH
Confidence            7543

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=97.66  E-value=0.0041  Score=68.28  Aligned_cols=359  Identities=12%  Similarity=0.116  Sum_probs=183.6

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHH-HHhhCCCCHHHHHHHHHHHHHhhCCC-chhHH
Q 009568          119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIF-VKLLASPSDDVREQAVWALGNVAGDS-PRCRD  196 (532)
Q Consensus       119 i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L-~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~  196 (532)
                      ++.+..+|....++++...++.+|..+.+=-  ....+++.+.++.| ..+|  .++.++..|+.+|..+.+.. +.+.+
T Consensus       208 l~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI--~i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~  283 (1073)
T 3gjx_A          208 FQLCQFVMENSQNAPLVHATLETLLRFLNWI--PLGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEE  283 (1073)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHTTTS--CTHHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHH
T ss_pred             HHHHHHHhcccCCHHHHHHHHHHHHHHHHhc--CHHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHH
Confidence            3344444544444888888899999988722  24567788888888 4666  46789999999999998642 32222


Q ss_pred             HHHh--cCChHHHHHHh------------hhhhhhHHHHHHHHHhhhccCCCC-----CCC-cccccchHHHHHHhhcCC
Q 009568          197 LVLS--QGALIPLLAQL------------NERAKLSMLRNATWTLSNFCRGKP-----QPP-FDQVRPALPALAQLVHSN  256 (532)
Q Consensus       197 ~~~~--~~~l~~L~~ll------------~~~~~~~~~~~a~~~L~~L~~~~~-----~~~-~~~~~~~l~~L~~lL~~~  256 (532)
                      .+..  ..++..+-.++            ....+.+.....+.++..+.....     .+. ......++..++.+-..+
T Consensus       284 ~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~  363 (1073)
T 3gjx_A          284 QFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVE  363 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCC
Confidence            2211  01111111111            012345666667777766554320     011 111223344455555677


Q ss_pred             CHHHHHHHHHHHHHh----ccCC------------------hhHHHHHHH---hCchHHHHHhhCCCCc----------c
Q 009568          257 DEEVLTDACWALSYL----SDGT------------------NDKIQAVIE---AGVCPRLVELLGHPSP----------S  301 (532)
Q Consensus       257 d~~v~~~a~~~L~~l----~~~~------------------~~~~~~~~~---~~~l~~L~~lL~~~~~----------~  301 (532)
                      |.++...++..=..+    ....                  +.. ..+..   ..+...++..+..++.          .
T Consensus       364 d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~-~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~  442 (1073)
T 3gjx_A          364 ETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPR-RQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEV  442 (1073)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHH-HHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCE
T ss_pred             cHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhH-HHHHHHHHHHHHHHHHHhcCCCccccccCcccchH
Confidence            777765544332222    2110                  011 11111   1223333344443321          0


Q ss_pred             chh-----------hHH-HHHHHhhcCCcchhHHHhhcCchHHHHHHhcCC-CchhHHHHHHHHHHHHhcC-CHHHHHHH
Q 009568          302 VLI-----------PAL-RTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS-HKKSIKKEACWTISNITAG-NRDQIQAV  367 (532)
Q Consensus       302 v~~-----------~al-~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~-~~~~~~~l  367 (532)
                      ++.           .++ .++..++.-....+..    -+++.+.+.+..+ .++.....+||+++.++.. .++.-..+
T Consensus       443 ~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~----i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~  518 (1073)
T 3gjx_A          443 VREFMKDTDSINLYKNMRETLVYLTHLDYVDTEI----IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRF  518 (1073)
T ss_dssp             EEEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHH----HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHH
T ss_pred             HHHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHH----HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccch
Confidence            111           011 1222332211111111    1234444444432 2578899999999999853 22211122


Q ss_pred             HHcCCHHHHHHHHhcC---c--hhHHHHHHHHHHHhhcC--CCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHH
Q 009568          368 IDAGLVGPLVNLLQNA---E--FDIKKEAAWAISNATSG--GTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLEN  440 (532)
Q Consensus       368 ~~~~~i~~L~~ll~~~---~--~~v~~~a~~aL~nl~~~--~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~  440 (532)
                      +- .+++.|+.+....   +  ..++...+|+++.....  ..++..+.     ++..|+..+...++.++..|..++..
T Consensus       519 Lp-~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~-----vl~~L~~~m~~~~~~vq~aA~~af~~  592 (1073)
T 3gjx_A          519 LV-TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT-----VVNKLFEFMHETHDGVQDMACDTFIK  592 (1073)
T ss_dssp             HH-HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTCCSTTHHHHHHHHHHH
T ss_pred             HH-HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            21 2677777777654   2  33566677888876543  12333333     67788888888899999999999999


Q ss_pred             HHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHH
Q 009568          441 ILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILE  494 (532)
Q Consensus       441 l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~  494 (532)
                      +...+...-.....| ...+|...+. ...-.....|+.+.-..+|+....++.
T Consensus       593 i~~~C~~~lv~~~~~-e~~p~i~~il-~~~~~~~~~l~~~~~~~lyeav~~vi~  644 (1073)
T 3gjx_A          593 IAQKCRRHFVQVQVG-EVMPFIDEIL-NNINTIICDLQPQQVHTFYEAVGYMIG  644 (1073)
T ss_dssp             HHHHTGGGGTSCCTT-CSSCHHHHHH-TSHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhcccc-ccchHHHHHH-HHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            998876542111111 3455666554 222233333333344444444444443

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.54  E-value=0.0013  Score=59.57  Aligned_cols=181  Identities=14%  Similarity=0.075  Sum_probs=122.1

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCC----cchhHH
Q 009568          248 ALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGD----DFQTQC  323 (532)
Q Consensus       248 ~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~----~~~~~~  323 (532)
                      .+...+.+.|..-...++..|.......++.....++ .+++.+.-.+.+.+..+...++.+|..+...-    ......
T Consensus        50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lD-ll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~  128 (266)
T 2of3_A           50 SLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSD-LLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE  128 (266)
T ss_dssp             HHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHH-HHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence            4555666677777777777776655433332222222 13444444455778888888888888775311    111111


Q ss_pred             HhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCC
Q 009568          324 IITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGG  402 (532)
Q Consensus       324 ~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~  402 (532)
                      - -.-++|.|+.-+-++ ...+|..+-.++..++. ..+.        .+++.++.-+.+.+.++|.+++..+..+....
T Consensus       129 e-a~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v~~~~--------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~  198 (266)
T 2of3_A          129 E-VSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDVVGPL--------KMTPMLLDALKSKNARQRSECLLVIEYYITNA  198 (266)
T ss_dssp             H-HHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHCCHH--------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence            1 124679999999888 88899888877766654 2232        15667788888999999999999999887522


Q ss_pred             CHHHHHHHHHcCCh---HHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 009568          403 THEQIKYLVREGCI---KPLCDLFVCPDPRIVTVCLEGLENILKVG  445 (532)
Q Consensus       403 ~~~~~~~l~~~~~l---~~L~~lL~~~d~~v~~~al~~L~~l~~~~  445 (532)
                      ...      ....+   +.+..++.+.|..|+..|+.++..+....
T Consensus       199 G~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~  238 (266)
T 2of3_A          199 GIS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFE  238 (266)
T ss_dssp             CSG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred             CCC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence            211      13468   99999999999999999999999887653

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.52  E-value=0.00095  Score=62.01  Aligned_cols=192  Identities=13%  Similarity=0.111  Sum_probs=124.3

Q ss_pred             ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCch-hHhh--hCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCh
Q 009568           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPI-EEVI--QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTS  150 (532)
Q Consensus        74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~-~~~i--~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~  150 (532)
                      ..|| +-+.|.|.++..|..|+..+.+++........ +...  -....+.+...+.+.+ ..++..++.++..++....
T Consensus        10 sklp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~~~   87 (278)
T 4ffb_C           10 TTLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDAFA   87 (278)
T ss_dssp             -CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTTCC
T ss_pred             hcCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHhh
Confidence            3455 66789999999999999999999875321111 1111  1235666777887777 8999999999998875211


Q ss_pred             -----hhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHH
Q 009568          151 -----ENTKVVIDHGAVPIFVK-LLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNAT  224 (532)
Q Consensus       151 -----~~~~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~  224 (532)
                           .......-..+++.|+. .+.+....++..+..++..++...... ..     ++..++..+ .+.++.++..++
T Consensus        88 ~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l-~~Knpkv~~~~l  160 (278)
T 4ffb_C           88 SSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFF-EKKLPKLIAAAA  160 (278)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGG-GCSCHHHHHHHH
T ss_pred             hhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHH-hccCHHHHHHHH
Confidence                 11111112245677776 477788999999988887776432211 11     134444555 667888888888


Q ss_pred             HHhhhccCCCC--CC-CcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 009568          225 WTLSNFCRGKP--QP-PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG  274 (532)
Q Consensus       225 ~~L~~L~~~~~--~~-~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~  274 (532)
                      ..|..+.....  .. .......+++.+..++.+.|+.|+..|..++..+...
T Consensus       161 ~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          161 NCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             HHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            77777665421  11 1222345666788899999999999999998876543

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.45  E-value=0.001  Score=65.40  Aligned_cols=259  Identities=13%  Similarity=0.074  Sum_probs=144.6

Q ss_pred             hhhhccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC
Q 009568           70 QTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGT  149 (532)
Q Consensus        70 ~~~~~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~  149 (532)
                      ++..+-...|+..|-++.+++|.-|+-.||.++.......       |..       ...+ .   ..|+++++-++-+ 
T Consensus       170 eWPfqfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GA-------GR~-------~~~N-~---DLAvRLLCVLALD-  230 (800)
T 3oc3_A          170 ENVLDFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGG-------DIQ-------IRVD-S---KLFSKIYEILVTD-  230 (800)
T ss_dssp             CSGGGTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC-----------CC-------CCCC-T---THHHHHHHHHHHB-
T ss_pred             CCHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCC-------cee-------cccc-H---HHHHHHHHHHHhc-
Confidence            3455566888899999999999999999999987531111       111       1111 1   3344444444431 


Q ss_pred             hhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhh
Q 009568          150 SENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLS  228 (532)
Q Consensus       150 ~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~  228 (532)
                                    .+-.+.++ --..||+.|+.+|+.+ ..-+.-      ..++..++..+ ....-+++..++-.|.
T Consensus       231 --------------RFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLLGLK  288 (800)
T 3oc3_A          231 --------------KFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLIALG  288 (800)
T ss_dssp             --------------CCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHHHHH
T ss_pred             --------------cccccccCeeeeehHHHHHHHHHHH-HhCChh------HHHHHHHHhhc-CCCCeeehhhhHHHHH
Confidence                          11112222 1245777777777776 443321      22233333322 3334566666666666


Q ss_pred             hccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCC-C-ccchhhH
Q 009568          229 NFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP-S-PSVLIPA  306 (532)
Q Consensus       229 ~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~-~~v~~~a  306 (532)
                      ++ .+-  ..  ...++++.++..|.+.|++|+..|+.+|.-++  .++...     .++..+...|.+- + ..-....
T Consensus       289 YL-~DL--L~--~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA--~p~~l~-----~LL~iLWd~L~~LDDLSASTgSV  356 (800)
T 3oc3_A          289 YL-KEF--VE--DKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP--ITDSLD-----LVLEKCWKNIESEELISVSKTSN  356 (800)
T ss_dssp             HT-GGG--CC--CHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC--CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHH
T ss_pred             HH-HHH--HH--HHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc--chhhHH-----HHHHHHHHHhhhhcccchhhHHH
Confidence            66 110  00  14667777777778888888888888887777  222223     2333444444332 1 2233445


Q ss_pred             HHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchh
Q 009568          307 LRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFD  386 (532)
Q Consensus       307 l~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~  386 (532)
                      +..|+.|+..+...   ..+...+|.|...|.|+ -..||..+..+|..+.  .....+.+        ...+|-..+.+
T Consensus       357 MdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHt-ITSVR~AVL~TL~tfL--~~~~LRLI--------FQNILLE~nee  422 (800)
T 3oc3_A          357 LSLLTKIYRENPEL---SIPPERLKDIFPCFTSP-VPEVRTSILNMVKNLS--EESIDFLV--------AEVVLIEEKDE  422 (800)
T ss_dssp             HHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCS-SHHHHHHHHHHTTTCC--CHHHHHHH--------HHHHHHCSCHH
T ss_pred             HHHHHHHHcCCccc---ccChHHHHHHHhhhcCC-cHHHHHHHHHHHHHHH--hhhHHHHH--------HHHHHhCCcHH
Confidence            66677766654321   12237788888888888 8888888888887776  22222111        22334445667


Q ss_pred             HHHHHHHHH
Q 009568          387 IKKEAAWAI  395 (532)
Q Consensus       387 v~~~a~~aL  395 (532)
                      ++..+..+.
T Consensus       423 Il~lS~~VW  431 (800)
T 3oc3_A          423 IREMAIKLL  431 (800)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            776666555

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.39  E-value=0.0058  Score=56.60  Aligned_cols=191  Identities=12%  Similarity=0.127  Sum_probs=127.1

Q ss_pred             hHHHHHhhCCCCccchhhHHHHHHHhhcCCcchh--HHHh--hcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCC---
Q 009568          288 CPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQT--QCII--TYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN---  360 (532)
Q Consensus       288 l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~--~~~~--~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~---  360 (532)
                      +| |-.-|.+.+|..|..|+..+..+....+...  ....  -....+.+...+.++ +..+...++.++..++...   
T Consensus        12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~~   89 (278)
T 4ffb_C           12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS-NVVAQEQAIVALNSLIDAFASS   89 (278)
T ss_dssp             CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC--
T ss_pred             CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhh
Confidence            44 6678899999999999999998876544221  1111  113456677888888 9999999999999887521   


Q ss_pred             ---HHHHHHHHHcCCHHHHHHH-HhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHH
Q 009568          361 ---RDQIQAVIDAGLVGPLVNL-LQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLE  436 (532)
Q Consensus       361 ---~~~~~~l~~~~~i~~L~~l-l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~  436 (532)
                         .......+ ..++|.|+.- +.+....++..|..++..++....+.  .     .+++.+...+++.++.++..++.
T Consensus        90 ~~~~~~~~~~~-~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~--~-----~~~e~l~~~l~~Knpkv~~~~l~  161 (278)
T 4ffb_C           90 SLKNAHNITLI-STWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI--T-----QSVELVIPFFEKKLPKLIAAAAN  161 (278)
T ss_dssp             -CCHHHHHHHH-HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS--H-----HHHHHHGGGGGCSCHHHHHHHHH
T ss_pred             hcccchhHHHH-HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH--H-----HHHHHHHHHHhccCHHHHHHHHH
Confidence               11122222 2356777653 66677889988888888776543211  1     13567778889999999999999


Q ss_pred             HHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009568          437 GLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLE  499 (532)
Q Consensus       437 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~  499 (532)
                      .|..++........      ...+....     .+..+-.+..|.|++|+..|..++-.+|..
T Consensus       162 ~l~~~l~~fg~~~~------~~k~~l~~-----i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          162 CVYELMAAFGLTNV------NVQTFLPE-----LLKHVPQLAGHGDRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             HHHHHHHHHTTTTC------CHHHHHHH-----HGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhCCCcC------CchhHHHH-----HHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            99998875322110      11112221     235567788999999999999988776653

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.35  E-value=0.0017  Score=71.17  Aligned_cols=307  Identities=10%  Similarity=-0.016  Sum_probs=164.6

Q ss_pred             CCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc--hhHHHHHhcCChHH
Q 009568          129 EDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP--RCRDLVLSQGALIP  206 (532)
Q Consensus       129 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~--~~~~~~~~~~~l~~  206 (532)
                      .+ +.++..++.+|.....-  -....+++.+.++.+..+|.  ++.++..|+.+|..+.....  ..+..++..=.+..
T Consensus       205 ~~-~~l~~~~L~~l~s~i~w--i~~~~i~~~~ll~~l~~~L~--~~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~  279 (980)
T 3ibv_A          205 KN-YGTVGLCLQVYAQWVSW--ININLIVNEPCMNLLYSFLQ--IEELRCAACETMTEIVNKKMKPLEKLNLLNILNLNL  279 (980)
T ss_dssp             TC-HHHHHHHHHHHHHHTTT--SCHHHHHCHHHHHHHHHHTT--SHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             CC-HHHHHHHHHHHHHHHhh--cCHHhhhcchHHHHHHHHcC--ChHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHH
Confidence            55 88999999999998872  22345666678888888886  48999999999999985543  22222222100111


Q ss_pred             HHHHhhh-hhhhHHHHHHHHHhhhcc------CCCCC-CC-------cccccchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 009568          207 LLAQLNE-RAKLSMLRNATWTLSNFC------RGKPQ-PP-------FDQVRPALPALAQLVHSNDEEVLTDACWALSYL  271 (532)
Q Consensus       207 L~~ll~~-~~~~~~~~~a~~~L~~L~------~~~~~-~~-------~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l  271 (532)
                      .+..+.. ..|.++.+..+..+..++      ...+. ..       .....++++.++.++.+++.++...++..+..+
T Consensus       280 ~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~  359 (980)
T 3ibv_A          280 FFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDL  359 (980)
T ss_dssp             HHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHH
T ss_pred             HHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence            1111211 345555544443332221      11111 01       123457888889999888888877666665544


Q ss_pred             ccC-----C----hhHHHHHHHhCchHHHHHhhCCCCc----------------cchhhHHHHHHHhhcCCcchhHHHhh
Q 009568          272 SDG-----T----NDKIQAVIEAGVCPRLVELLGHPSP----------------SVLIPALRTVGNIVTGDDFQTQCIIT  326 (532)
Q Consensus       272 ~~~-----~----~~~~~~~~~~~~l~~L~~lL~~~~~----------------~v~~~al~~L~nl~~~~~~~~~~~~~  326 (532)
                      ...     .    ......++. .+++.++..+..++.                ..|....-.+..++.-.+......+-
T Consensus       360 l~~~~~~~~~~~~~~~~~~~l~-~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~  438 (980)
T 3ibv_A          360 LVSLRKESSSKELSASLKEFLK-SLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMY  438 (980)
T ss_dssp             HHHHHHHTTSCCCCHHHHHHHH-HHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHhccccccccHHHHHHHH-HHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence            321     0    111111221 344444444543211                12222221121222111111110000


Q ss_pred             cCchHHHHHHhc---CCCchhHHHHHHHHHHHHhcCCHHHHHHHH-Hc----CCHHHHHHHHh-----cCchhHHHHHHH
Q 009568          327 YGALPYLLGLLT---HSHKKSIKKEACWTISNITAGNRDQIQAVI-DA----GLVGPLVNLLQ-----NAEFDIKKEAAW  393 (532)
Q Consensus       327 ~~~l~~L~~lL~---~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~----~~i~~L~~ll~-----~~~~~v~~~a~~  393 (532)
                      .-+.+.+...+.   +. +...++.+..+|+.++.+......... ..    .+++.+..++.     ..++.|+..+++
T Consensus       439 ~~i~~~l~~~l~~~~~~-~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~  517 (980)
T 3ibv_A          439 SAITSSLSTAATLSPEN-SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYME  517 (980)
T ss_dssp             HHHHHHHHHHTTSCHHH-HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccCCC-CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence            012222333332   23 577888999999999875332111000 00    13455555555     567899999999


Q ss_pred             HHHHhhcCC--CHHHHHHHHHcCChHHHHh--hcCCCCHHHHHHHHHHHHHHHHhhhh
Q 009568          394 AISNATSGG--THEQIKYLVREGCIKPLCD--LFVCPDPRIVTVCLEGLENILKVGEA  447 (532)
Q Consensus       394 aL~nl~~~~--~~~~~~~l~~~~~l~~L~~--lL~~~d~~v~~~al~~L~~l~~~~~~  447 (532)
                      +++..+..-  .++....     ++..++.  .+.++++.++..|..++.++++....
T Consensus       518 ~l~rys~~~~~~~~~l~~-----~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~  570 (980)
T 3ibv_A          518 ILVRYASFFDYESAAIPA-----LIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK  570 (980)
T ss_dssp             HHHHTGGGGGTCCTTHHH-----HHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHhcCchhHHH-----HHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH
Confidence            999987642  2222222     4555666  56677889999999999999987765

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=97.31  E-value=0.0099  Score=54.99  Aligned_cols=201  Identities=14%  Similarity=0.109  Sum_probs=143.8

Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch----hHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhc
Q 009568          155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR----CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF  230 (532)
Q Consensus       155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~----~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L  230 (532)
                      .+...+.+..|+..|..-+.+.|..+..++.++......    ..+.+..  -...+..++....++++.-.+-..|...
T Consensus        73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRec  150 (341)
T 1upk_A           73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLREC  150 (341)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHH
Confidence            345567888899999888899999999999998765433    2233332  2344444444445666666666666666


Q ss_pred             cCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHh---CchHHHHHhhCCCCccchhhHH
Q 009568          231 CRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLGHPSPSVLIPAL  307 (532)
Q Consensus       231 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~---~~l~~L~~lL~~~~~~v~~~al  307 (532)
                      +++..........+.+-.+...++.++=++..+|..++..+...........+..   .++.....+|.+++..++..++
T Consensus       151 ir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl  230 (341)
T 1upk_A          151 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL  230 (341)
T ss_dssp             HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence            6654322223334455566778888899999999999998887766665666554   3677788899999999999999


Q ss_pred             HHHHHhhcCCcc---hhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 009568          308 RTVGNIVTGDDF---QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (532)
Q Consensus       308 ~~L~nl~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  358 (532)
                      ..||.|......   -++++-+..-+..++.+|++. +..++-+|..++--+.+
T Consensus       231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVA  283 (341)
T 1upk_A          231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVA  283 (341)
T ss_dssp             HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeee
Confidence            999999875331   233444456789999999999 99999999999888776

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=97.22  E-value=0.031  Score=51.46  Aligned_cols=294  Identities=15%  Similarity=0.165  Sum_probs=174.9

Q ss_pred             HHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhc-CCCHHHHH
Q 009568          184 LGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH-SNDEEVLT  262 (532)
Q Consensus       184 L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~  262 (532)
                      |.|+..+....-+-+...+++..+...+ +.++.++.+..+..|...+..+ ..........+|.++..+. ++++++..
T Consensus       266 LL~LLmHdSnAIDGFVk~DGv~~I~Tvi-nYpN~~l~RaG~KLLLQVSDak-sL~~t~L~e~LPFi~~~i~~h~eDdvvY  343 (619)
T 3c2g_A          266 LLGLLLHDSDAIDGFVRSDGVGAITTVV-QYPNNDLIRAGCKLLLQVSDAK-ALAKTPLENILPFLLRLIEIHPDDEVIY  343 (619)
T ss_dssp             HHHHHCCSHHHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHTTCG-GGGTSCCTTHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHhcccccccceeecccceeEEEEe-ecCCcHHHHhhhheeeeecchH-HHhhccccccchHHHHHhccCCCcceEE
Confidence            3344455555667778888899888888 7778889999999998887664 2223345678999888886 67899999


Q ss_pred             HHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCC-------Ccc-------chhhHHHHHHHhhc-------------
Q 009568          263 DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP-------SPS-------VLIPALRTVGNIVT-------------  315 (532)
Q Consensus       263 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-------~~~-------v~~~al~~L~nl~~-------------  315 (532)
                      .....|+|.........+..+..+.++.|...+...       +..       +...+++++.|+..             
T Consensus       344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~  423 (619)
T 3c2g_A          344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTA  423 (619)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCC
T ss_pred             ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccC
Confidence            999999999988777777788889999988876431       222       33445555555531             


Q ss_pred             CCc--chhHHHhhcCchHHHHHHhcCCC-c----hhHHHHHHHHHHHHhcCC---HHH----HHHHHHcCCHHHHHHHHh
Q 009568          316 GDD--FQTQCIITYGALPYLLGLLTHSH-K----KSIKKEACWTISNITAGN---RDQ----IQAVIDAGLVGPLVNLLQ  381 (532)
Q Consensus       316 ~~~--~~~~~~~~~~~l~~L~~lL~~~~-~----~~v~~~a~~~L~nl~~~~---~~~----~~~l~~~~~i~~L~~ll~  381 (532)
                      |..  .+...+++..++..|+..|+-.. +    -++|.......--+....   .+.    ++..-+.+++-.++-.+.
T Consensus       424 G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRTP~~Pkd~~l~VtDd~rk~NLvGHIciA~s  503 (619)
T 3c2g_A          424 GPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRTPFVPKDGVLNVIDENRKENLIGHICAAYS  503 (619)
T ss_dssp             CHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTCTTSCCTTGGGCCCTTTCCCHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcCCCCchhhhccccchhhhhhhHHHHHHHHH
Confidence            111  12334566678888888886431 1    245555554444333310   000    011112233333333332


Q ss_pred             c-----Cchh-------HHHHHHHHHHHhhc-CCCHHHHHHHHHcCChHHHHhhcCCC--CHHHHHHHHHHHHHHHHhhh
Q 009568          382 N-----AEFD-------IKKEAAWAISNATS-GGTHEQIKYLVREGCIKPLCDLFVCP--DPRIVTVCLEGLENILKVGE  446 (532)
Q Consensus       382 ~-----~~~~-------v~~~a~~aL~nl~~-~~~~~~~~~l~~~~~l~~L~~lL~~~--d~~v~~~al~~L~~l~~~~~  446 (532)
                      .     .+.+       +.+.+...|..+.. .|...+...  ..-.++.=+.+|+..  .|..+..++..-..+++.++
T Consensus       504 Wa~~Q~tNertqdTkqQLiER~fSLL~~LmEQc~~E~qVAh--~~YsIsCPLnlLn~nQ~KP~FI~NVL~VcDKILeHcP  581 (619)
T 3c2g_A          504 WVFRQPNNTRTQSTKQQLVERTISLLLVLMEQCGAEKEVAQ--YSYSIDCPLNLLNGNQVKPTFIHNVLVVCDKILEHCP  581 (619)
T ss_dssp             HHHHSCCCTTTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH--TTTTSCCGGGGGSSCCCCHHHHHHHHHHHHHHHHHCT
T ss_pred             HhhcCccccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHh--heeeccCchhhhcccccChHHHHHHHHHHHHHHHhCc
Confidence            1     1221       22333333434433 223322221  011233344566654  46777777877778887665


Q ss_pred             hhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009568          447 AEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETY  496 (532)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~  496 (532)
                      ....             ..  .-.-..++.+.+|+|+++...|..++.+|
T Consensus       582 ~~Ad-------------~W--~i~r~tle~l~NHsNsDIa~aasSLL~rf  616 (619)
T 3c2g_A          582 TRAD-------------IW--TIDRPMLEGLTNHRNSDIAKAANSLLSRF  616 (619)
T ss_dssp             THHH-------------HS--CCCHHHHHHHHTCSSHHHHHHHHHHHTTS
T ss_pred             chhc-------------cc--eechHHHHHHhcCCCchHHHHHHHHHHhC
Confidence            4321             00  11124678889999999999999998876

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=97.19  E-value=0.021  Score=50.48  Aligned_cols=184  Identities=11%  Similarity=0.145  Sum_probs=123.1

Q ss_pred             CHHHHHHHHHHHHHhccCChhHHHHHHHh-CchHHHHH-------hhCCCCc-----cchhhHHHHHHHhhcCCcchhHH
Q 009568          257 DEEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVE-------LLGHPSP-----SVLIPALRTVGNIVTGDDFQTQC  323 (532)
Q Consensus       257 d~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~L~~-------lL~~~~~-----~v~~~al~~L~nl~~~~~~~~~~  323 (532)
                      +++.++.|+..|+.--+..++....+..+ |.+..|++       .+..+.-     .-...|+..+..++++ ++.+..
T Consensus        14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAsh-petr~~   92 (268)
T 2fv2_A           14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASH-PETRSA   92 (268)
T ss_dssp             STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHC-TTTHHH
T ss_pred             CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcC-cchhhH
Confidence            44557777776666444444443333332 44444432       2222221     1224466666777764 446678


Q ss_pred             HhhcCchHHHHHHhcCCC----chhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009568          324 IITYGALPYLLGLLTHSH----KKSIKKEACWTISNITA-GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNA  398 (532)
Q Consensus       324 ~~~~~~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl  398 (532)
                      ++++++.-.|..+|+...    -+.+|-.+.++++.+.. ++++.+..+++.+++|..++.|+.++.-.+.-|...+..+
T Consensus        93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI  172 (268)
T 2fv2_A           93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI  172 (268)
T ss_dssp             HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            899999888999886541    24788899999999886 7889999999999999999999999999999999999998


Q ss_pred             hcCCCHHHHHHHHH--------cCChHHHHh-hcCCCCHHHHHHHHHHHHHHHH
Q 009568          399 TSGGTHEQIKYLVR--------EGCIKPLCD-LFVCPDPRIVTVCLEGLENILK  443 (532)
Q Consensus       399 ~~~~~~~~~~~l~~--------~~~l~~L~~-lL~~~d~~v~~~al~~L~~l~~  443 (532)
                      ..  +.....+++.        ..++..++. +.+.+.+.+.+.++.+-..+..
T Consensus       173 L~--dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsd  224 (268)
T 2fv2_A          173 LL--DDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSD  224 (268)
T ss_dssp             HH--SHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT
T ss_pred             hc--cchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence            87  3344444332        112333333 3456778888888877766654

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.17  E-value=0.0052  Score=55.64  Aligned_cols=178  Identities=15%  Similarity=0.076  Sum_probs=116.2

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhh---hhhhhHHHHHHHHHhhhcc----CCCC
Q 009568          163 PIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN---ERAKLSMLRNATWTLSNFC----RGKP  235 (532)
Q Consensus       163 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~---~~~~~~~~~~a~~~L~~L~----~~~~  235 (532)
                      +.+...|-+.+..-+..++..|.......+.   .+..  .+..+++.+.   .+.+..+...++.+|..+.    ....
T Consensus        49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~---~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y  123 (266)
T 2of3_A           49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPR---SLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET  123 (266)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHH---HHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhhhChH---HHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence            3445555555666666666666655433221   2111  2333333321   2456667666666666553    2222


Q ss_pred             CCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhc
Q 009568          236 QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT  315 (532)
Q Consensus       236 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~  315 (532)
                      .-.......++|.|+.-+.++.+.++..+-.++..+..-.+       -..+++.++.-+.+.++..+..++..++.+..
T Consensus       124 ~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~-------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~  196 (266)
T 2of3_A          124 PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG-------PLKMTPMLLDALKSKNARQRSECLLVIEYYIT  196 (266)
T ss_dssp             CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence            22222246788999999988899998888877766653211       12467788888999999999999999999976


Q ss_pred             CCcchhHHHhhcCch---HHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 009568          316 GDDFQTQCIITYGAL---PYLLGLLTHSHKKSIKKEACWTISNITA  358 (532)
Q Consensus       316 ~~~~~~~~~~~~~~l---~~L~~lL~~~~~~~v~~~a~~~L~nl~~  358 (532)
                      .....     ....+   +.+..++.+. +..||..|..++..+-.
T Consensus       197 ~~G~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~  236 (266)
T 2of3_A          197 NAGIS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFK  236 (266)
T ss_dssp             HHCSG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred             hcCCC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence            43322     23467   9999999998 99999999999987765

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=97.17  E-value=0.07  Score=49.14  Aligned_cols=364  Identities=14%  Similarity=0.188  Sum_probs=200.3

Q ss_pred             HHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcC----CC-------CHHHHHHHHHHHHHH
Q 009568           77 PAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR----ED-------YPQLQFEAAWALTNI  145 (532)
Q Consensus        77 ~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~----~~-------~~~~~~~a~~~L~~l  145 (532)
                      ..+....+.+||..++.-+..+|.....++-..++..--.|.+..++.++.+    ..       ++.+-..-+.+|..+
T Consensus         9 QAir~WFnTpDPqrrfhMA~tiReWvrrDKlaqvDqAnlPnCiq~lLnII~DGlKPQpvQlP~sYYaQLw~~LLDIL~Rl   88 (619)
T 3c2g_A            9 QAIRLWFNTPDPMQRLHMAKTIRTWIRQDKFAQVDQANMPNCVQQILNIIYDGLKPQPVQLPISYYAQLWYNLLDILRRF   88 (619)
T ss_dssp             HHHHHGGGCCCHHHHHHHHHHHHHHHHHHTTTTSCGGGHHHHHHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHhhhhhcccCcccCchHHHHHHHHHhcCCCcccccCChhHHHHHHHHHHHHHHHH
Confidence            3456777889999999999999998876433334433334556666655532    11       123333344455555


Q ss_pred             hcC--ChhhHHHHHh------CC---ChHHHHHhhC-----CCC-HHHHHHHHHHHHHhhC--CCchhHHHHHhcCChHH
Q 009568          146 ASG--TSENTKVVID------HG---AVPIFVKLLA-----SPS-DDVREQAVWALGNVAG--DSPRCRDLVLSQGALIP  206 (532)
Q Consensus       146 ~~~--~~~~~~~i~~------~g---~i~~L~~lL~-----~~~-~~v~~~a~~~L~nl~~--~~~~~~~~~~~~~~l~~  206 (532)
                      ...  ...+...++.      +|   +=..++.+++     +++ .....++..++.|+..  ..+..|..+...--...
T Consensus        89 T~~~it~PyIHqvVQlF~PreNgp~dFRdLICN~iq~~~~~d~hm~~CAkQvF~Ife~ii~~~KneKLR~dFAr~~Kfek  168 (619)
T 3c2g_A           89 TFLPIISPYIHQVVQMFCPRENGPQDFRELICNLISLNWQKDPHMKHCANQVFQIFNCIIMGVKNEKLRTEFAQHLKFEK  168 (619)
T ss_dssp             HHCGGGGGGHHHHHHTTSCSSSSTTSHHHHHHHHTCGGGGGSTTTHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCSHH
T ss_pred             hhccccchHHHHHHHHhccCCCCchhHHHHHHHhcCccccCChHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHhHHHH
Confidence            441  1122222222      11   1122222222     111 2344556666666653  23344444444333333


Q ss_pred             HHHHhhhhh---------hhHHHHHHHHH-----------hhhccCCC-CCCCc---ccccchHHHHHHhhcCCC-----
Q 009568          207 LLAQLNERA---------KLSMLRNATWT-----------LSNFCRGK-PQPPF---DQVRPALPALAQLVHSND-----  257 (532)
Q Consensus       207 L~~ll~~~~---------~~~~~~~a~~~-----------L~~L~~~~-~~~~~---~~~~~~l~~L~~lL~~~d-----  257 (532)
                      ++..|...-         ++.+....-..           +++=-... +.++.   ...++++-.-.+++.-.|     
T Consensus       169 l~gtL~~yl~pq~~p~~iNPtil~~lRFiISKDt~lKd~~IWn~~~q~d~~PP~s~li~Lkgv~~~s~~~~~~~dpet~~  248 (619)
T 3c2g_A          169 LVGTLSEYFNPQVHPGMINPAIFIIFRFIISKDTRLKDYFIWNNNPHDQPPPPTGLIIKLNAVMIGSYRLIAGQNPETLP  248 (619)
T ss_dssp             HHHHHHGGGCTTSCGGGCCTHHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCCTTSHHHHHHHHHHHHHHHHTTCCGGGGG
T ss_pred             HHHHHHHhcCCCCCccccCchhhhhhHhhhcccceeccceeeCCccccCCCCChhHHHHHHHHHHhhHHhhcCCChhccc
Confidence            333332111         23222211111           11111111 11111   112333333334444333     


Q ss_pred             --HH------HHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCc
Q 009568          258 --EE------VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGA  329 (532)
Q Consensus       258 --~~------v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~  329 (532)
                        ++      |...+...| ++.-...+.++.+++.+.+..+...+..++.++....+..|-..+.... ....-+ ...
T Consensus       249 qNpel~~LiQVvtR~FDLL-~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaks-L~~t~L-~e~  325 (619)
T 3c2g_A          249 QNPELAHLIQVIIRTFDLL-GLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKA-LAKTPL-ENI  325 (619)
T ss_dssp             GCHHHHHHHHHHHHHHHHH-HHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGG-GGTSCC-TTH
T ss_pred             CCHHHHHHHHHHHHHHHHH-HHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHH-Hhhccc-ccc
Confidence              22      333444334 4444556677889999999999999999999999999999888775332 111111 267


Q ss_pred             hHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC-------chhHHHHHHHHHHHhh---
Q 009568          330 LPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA-------EFDIKKEAAWAISNAT---  399 (532)
Q Consensus       330 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-------~~~v~~~a~~aL~nl~---  399 (532)
                      +|.++..+.-..+.++.......|+|+.++.....+..+..|.++.|...+...       +..-++.||..++|..   
T Consensus       326 LPFi~~~i~~h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRal  405 (619)
T 3c2g_A          326 LPFLLRLIEIHPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTL  405 (619)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHhccCCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHH
Confidence            889888886443889999999999999998887777778899999999887542       3334555665555543   


Q ss_pred             ----c------CC--------CHHHHHHHHHcCChHHHHhhcCCCC------HHHHHHHHHHHHHHHH
Q 009568          400 ----S------GG--------THEQIKYLVREGCIKPLCDLFVCPD------PRIVTVCLEGLENILK  443 (532)
Q Consensus       400 ----~------~~--------~~~~~~~l~~~~~l~~L~~lL~~~d------~~v~~~al~~L~~l~~  443 (532)
                          .      +|        +..+.-.+++.++++.|+.+|+.+.      -+++..++..+.-+++
T Consensus       406 NNFLMmWIPm~NGqr~~~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlR  473 (619)
T 3c2g_A          406 NNFLMMWIPTPNGETKTAGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLR  473 (619)
T ss_dssp             HHHHGGGSCCTTSCCCCCCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHT
T ss_pred             hhheeEEEecCCCccccCChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhc
Confidence                1      11        2334455566678889999887532      2456666665555543

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=97.03  E-value=0.00031  Score=63.25  Aligned_cols=185  Identities=16%  Similarity=0.086  Sum_probs=127.1

Q ss_pred             hhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCC
Q 009568           81 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG  160 (532)
Q Consensus        81 ~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g  160 (532)
                      ..+.++++.++..++..+         +          ...|..++++++ +.++..++..|   .              
T Consensus        57 ~ll~d~~~~VR~~AA~~l---------~----------~~~l~~L~~D~~-~~VR~~aA~~L---~--------------   99 (244)
T 1lrv_A           57 QYLADPFWERRAIAVRYS---------P----------VEALTPLIRDSD-EVVRRAVAYRL---P--------------   99 (244)
T ss_dssp             GGTTCSSHHHHHHHHTTS---------C----------GGGGGGGTTCSS-HHHHHHHHTTS---C--------------
T ss_pred             HHhcCCCHHHHHHHHHhC---------C----------HHHHHHHccCcC-HHHHHHHHHHC---C--------------
Confidence            345788888988888743         0          223677778887 89999988642   1              


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcc
Q 009568          161 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD  240 (532)
Q Consensus       161 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~  240 (532)
                       .+.|..++.+++..||..++..+   .               ...+..++ ++++..++..++..+   .         
T Consensus       100 -~~~L~~ll~D~d~~VR~~aA~~l---~---------------~~~L~~L~-~D~d~~VR~~aA~~l---~---------  147 (244)
T 1lrv_A          100 -REQLSALMFDEDREVRITVADRL---P---------------LEQLEQMA-ADRDYLVRAYVVQRI---P---------  147 (244)
T ss_dssp             -SGGGGGTTTCSCHHHHHHHHHHS---C---------------TGGGGGGT-TCSSHHHHHHHHHHS---C---------
T ss_pred             -HHHHHHHHcCCCHHHHHHHHHhC---C---------------HHHHHHHH-cCCCHHHHHHHHHhc---C---------
Confidence             24577788889999998888742   1               11233334 778888998888732   1         


Q ss_pred             cccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcch
Q 009568          241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ  320 (532)
Q Consensus       241 ~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~  320 (532)
                           .+.+..+++++++.|+..++..+   .               .+.+..++.++++.|+..+...+          
T Consensus       148 -----~~~l~~l~~D~d~~VR~~aa~~l---~---------------~~ll~~ll~D~d~~VR~aaa~~l----------  194 (244)
T 1lrv_A          148 -----PGRLFRFMRDEDRQVRKLVAKRL---P---------------EESLGLMTQDPEPEVRRIVASRL----------  194 (244)
T ss_dssp             -----GGGGGGTTTCSCHHHHHHHHHHS---C---------------GGGGGGSTTCSSHHHHHHHHHHC----------
T ss_pred             -----HHHHHHHHcCCCHHHHHHHHHcC---C---------------HHHHHHHHcCCCHHHHHHHHHhC----------
Confidence                 02344667788999998887641   1               13445677889999998887652          


Q ss_pred             hHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHH
Q 009568          321 TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAI  395 (532)
Q Consensus       321 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL  395 (532)
                              ..+.|..++.++ ++.||..++..++                  .+.|..+ .+.++.||..|...|
T Consensus       195 --------~~~~L~~Ll~D~-d~~VR~~aa~~l~------------------~~~L~~L-~D~~~~VR~aa~~~L  241 (244)
T 1lrv_A          195 --------RGDDLLELLHDP-DWTVRLAAVEHAS------------------LEALREL-DEPDPEVRLAIAGRL  241 (244)
T ss_dssp             --------CGGGGGGGGGCS-SHHHHHHHHHHSC------------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred             --------CHHHHHHHHcCC-CHHHHHHHHHcCC------------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence                    125677778888 9999999988753                  2445555 777899998887654

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=96.96  E-value=0.071  Score=51.78  Aligned_cols=247  Identities=14%  Similarity=0.061  Sum_probs=147.8

Q ss_pred             CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHH
Q 009568          172 PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQ  251 (532)
Q Consensus       172 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~  251 (532)
                      .+...+..|+..+.....+-|..++.     ++..++.++ .+.+..++..++..|..+|.+      ..+..+..+|++
T Consensus        40 g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~Q  107 (507)
T 3u0r_A           40 GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLC-EDEDVSIRRQAIKELPQFATG------ENLPRVADILTQ  107 (507)
T ss_dssp             SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHH
Confidence            57899999999999999888887666     478899999 788999999999999999987      346788899999


Q ss_pred             hhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCC-cchhHHHhhcCch
Q 009568          252 LVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGD-DFQTQCIITYGAL  330 (532)
Q Consensus       252 lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~-~~~~~~~~~~~~l  330 (532)
                      +|+++++.-...+-++|..+...++.        +.+..+...+..+++.+|..++..|..-...- ......-.+.-+.
T Consensus       108 lLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~  179 (507)
T 3u0r_A          108 LLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELIL  179 (507)
T ss_dssp             HTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHH
T ss_pred             HHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHH
Confidence            99999888777777777776654442        23333444443456788888888775543221 1111112222345


Q ss_pred             HHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHH------hcCchhHHHHHHHHHHHhh----
Q 009568          331 PYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQAVIDAGLVGPLVNLL------QNAEFDIKKEAAWAISNAT----  399 (532)
Q Consensus       331 ~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll------~~~~~~v~~~a~~aL~nl~----  399 (532)
                      ..+.++|.+- ...--.-...+|..+-. .++...+.++     +.+....      ...|++.......++....    
T Consensus       180 ~~ikK~L~DV-T~~EF~L~m~lL~~lkl~~t~~g~qeLv-----~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS  253 (507)
T 3u0r_A          180 TESKKVLEDV-TGEEFVLFMKILSGLKSLQTVSGRQQLV-----ELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFS  253 (507)
T ss_dssp             HHHHHHTTSC-CHHHHHHHHHHHHTSGGGSSHHHHHHHH-----HHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCB
T ss_pred             HHHHHHhccc-cHHHHHHHHHHHHhcccccCchHHHHHH-----HHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhc
Confidence            5566666544 33222333344444333 3444444443     2233322      1134454444444444332    


Q ss_pred             cC-CCHHHHHHHHHcCChHHHHhhcCCC-CHHHHHHHHHHHHHHHHhh
Q 009568          400 SG-GTHEQIKYLVREGCIKPLCDLFVCP-DPRIVTVCLEGLENILKVG  445 (532)
Q Consensus       400 ~~-~~~~~~~~l~~~~~l~~L~~lL~~~-d~~v~~~al~~L~~l~~~~  445 (532)
                      .+ .+.....++++. +++.+-.+-... .++.+...|.++..+..+.
T Consensus       254 ~~v~StkFv~y~~~k-IlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~  300 (507)
T 3u0r_A          254 KNVHSTRFVTYFCEQ-VLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFC  300 (507)
T ss_dssp             TTBCCHHHHHHHHHH-TGGGTTCCCCC--CCCHHHHHHHHHHHHHTTC
T ss_pred             cCCChHHHHHHHHHh-hccchhhccccccchHHHHHHHHHHHHHccCC
Confidence            21 245677776664 777665444321 1224445566666655544

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=96.92  E-value=0.076  Score=49.15  Aligned_cols=204  Identities=14%  Similarity=0.096  Sum_probs=145.6

Q ss_pred             HHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcc----hhHHHhhc-CchHHHHHHhcCCCchhHHHHHHHHHH
Q 009568          280 QAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDF----QTQCIITY-GALPYLLGLLTHSHKKSIKKEACWTIS  354 (532)
Q Consensus       280 ~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~----~~~~~~~~-~~l~~L~~lL~~~~~~~v~~~a~~~L~  354 (532)
                      +.+...+++..|+..|..-+.+.+..+..+++++......    ..+++... .++..|+.-..   ++++--.+...|.
T Consensus        72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe---~~diAl~~G~mLR  148 (341)
T 1upk_A           72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE---SPEIALNCGIMLR  148 (341)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG---STTTHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc---cchhHhHHHHHHH
Confidence            4566779999999999988888999999999999875542    23334331 22333333332   3455555555555


Q ss_pred             HHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc--CChHHHHhhcCCCCHHHHH
Q 009568          355 NITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVRE--GCIKPLCDLFVCPDPRIVT  432 (532)
Q Consensus       355 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~--~~l~~L~~lL~~~d~~v~~  432 (532)
                      -++. .+.....++..+.+-.+.+.++.++.++...|..++..+......-...+|..+  .....+..+|.+++.-++.
T Consensus       149 ecir-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkR  227 (341)
T 1upk_A          149 ECIR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKR  227 (341)
T ss_dssp             HHHT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHH
T ss_pred             HHHH-hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHH
Confidence            5554 466677788888888999999999999999999999988876433333333321  3477788899999999999


Q ss_pred             HHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009568          433 VCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW  497 (532)
Q Consensus       433 ~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~  497 (532)
                      .++..|..++-...+..          -....+.+..-+..+..|..+++..|+-.|..+..-|.
T Consensus       228 QSlKLLgelLldr~N~~----------vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFV  282 (341)
T 1upk_A          228 QSLKLLGELLLDRHNFT----------IMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFV  282 (341)
T ss_dssp             HHHHHHHHHHHSGGGHH----------HHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCchHHH----------HHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeee
Confidence            99999999997654322          23445556666788888899999999999988765443

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=96.85  E-value=0.00037  Score=62.76  Aligned_cols=185  Identities=16%  Similarity=0.129  Sum_probs=128.3

Q ss_pred             HhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCC
Q 009568          124 EFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGA  203 (532)
Q Consensus       124 ~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~  203 (532)
                      .++.+++ +.++..++..+                  ....|..++.++++.||..++..|.                  
T Consensus        57 ~ll~d~~-~~VR~~AA~~l------------------~~~~l~~L~~D~~~~VR~~aA~~L~------------------   99 (244)
T 1lrv_A           57 QYLADPF-WERRAIAVRYS------------------PVEALTPLIRDSDEVVRRAVAYRLP------------------   99 (244)
T ss_dssp             GGTTCSS-HHHHHHHHTTS------------------CGGGGGGGTTCSSHHHHHHHHTTSC------------------
T ss_pred             HHhcCCC-HHHHHHHHHhC------------------CHHHHHHHccCcCHHHHHHHHHHCC------------------
Confidence            4456766 89999888743                  1234677888899999999886421                  


Q ss_pred             hHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHH
Q 009568          204 LIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVI  283 (532)
Q Consensus       204 l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~  283 (532)
                      ...|..++ .+++..++..+...+   .              .+.+..++.++++.|+..+...   +.           
T Consensus       100 ~~~L~~ll-~D~d~~VR~~aA~~l---~--------------~~~L~~L~~D~d~~VR~~aA~~---l~-----------  147 (244)
T 1lrv_A          100 REQLSALM-FDEDREVRITVADRL---P--------------LEQLEQMAADRDYLVRAYVVQR---IP-----------  147 (244)
T ss_dssp             SGGGGGTT-TCSCHHHHHHHHHHS---C--------------TGGGGGGTTCSSHHHHHHHHHH---SC-----------
T ss_pred             HHHHHHHH-cCCCHHHHHHHHHhC---C--------------HHHHHHHHcCCCHHHHHHHHHh---cC-----------
Confidence            12344455 778888998888753   1              0235566788899999888763   11           


Q ss_pred             HhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHH
Q 009568          284 EAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ  363 (532)
Q Consensus       284 ~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~  363 (532)
                          .+.+..++.++++.|+..++..+   .               -+.+..++.++ ++.||..++..+          
T Consensus       148 ----~~~l~~l~~D~d~~VR~~aa~~l---~---------------~~ll~~ll~D~-d~~VR~aaa~~l----------  194 (244)
T 1lrv_A          148 ----PGRLFRFMRDEDRQVRKLVAKRL---P---------------EESLGLMTQDP-EPEVRRIVASRL----------  194 (244)
T ss_dssp             ----GGGGGGTTTCSCHHHHHHHHHHS---C---------------GGGGGGSTTCS-SHHHHHHHHHHC----------
T ss_pred             ----HHHHHHHHcCCCHHHHHHHHHcC---C---------------HHHHHHHHcCC-CHHHHHHHHHhC----------
Confidence                12345677888999998887741   1               13455677787 999999988652          


Q ss_pred             HHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHH
Q 009568          364 IQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGL  438 (532)
Q Consensus       364 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L  438 (532)
                              ..+.|..++.+.++.||..++..+.                   .+.|..+ +++++.|+..+...|
T Consensus       195 --------~~~~L~~Ll~D~d~~VR~~aa~~l~-------------------~~~L~~L-~D~~~~VR~aa~~~L  241 (244)
T 1lrv_A          195 --------RGDDLLELLHDPDWTVRLAAVEHAS-------------------LEALREL-DEPDPEVRLAIAGRL  241 (244)
T ss_dssp             --------CGGGGGGGGGCSSHHHHHHHHHHSC-------------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred             --------CHHHHHHHHcCCCHHHHHHHHHcCC-------------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence                    1256777889999999999998753                   2345445 889999998876543

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=96.78  E-value=0.0039  Score=61.39  Aligned_cols=246  Identities=14%  Similarity=0.104  Sum_probs=156.4

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch--hHHHHHhcCChHHHHHHhh--h-------hhhhHHHHHHHHHhhh
Q 009568          161 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPR--CRDLVLSQGALIPLLAQLN--E-------RAKLSMLRNATWTLSN  229 (532)
Q Consensus       161 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~--~~~~~~~~~~l~~L~~ll~--~-------~~~~~~~~~a~~~L~~  229 (532)
                      +...|+.-|-++..++|.-|+.+|..+......  .+.........-.++-++.  +       .--..+++.|+.+|+.
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa  254 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR  254 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence            446666667778999999999999988632110  0000001122222333221  1       1124689999999999


Q ss_pred             ccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHH
Q 009568          230 FCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT  309 (532)
Q Consensus       230 L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~  309 (532)
                      + ..-+..     ..++..++..+..+.++++..++-.|.|+.+--..     + .++++.++..|.+.+++|+..|+.+
T Consensus       255 L-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~-----L-d~Vv~aVL~GL~D~DDDVRAVAAet  322 (800)
T 3oc3_A          255 I-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED-----K-DGLCRKLVSLLSSPDEDIKLLSAEL  322 (800)
T ss_dssp             H-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC-----H-HHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             H-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH-----H-HHHHHHHHhhcCCcccHHHHHHHHH
Confidence            8 543333     35555666666788999999999999999321111     2 3678888899999999999999999


Q ss_pred             HHHhhcCCcchhHHHhhcCchHHHHHHhcCCCc-hhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHH
Q 009568          310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHK-KSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIK  388 (532)
Q Consensus       310 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  388 (532)
                      |..++  .+....     .++..+...|.+-.+ ..-.......|+.++...+.   .......+|.|..++.+.-..||
T Consensus       323 LiPIA--~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHtITSVR  392 (800)
T 3oc3_A          323 LCHFP--ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSPVPEVR  392 (800)
T ss_dssp             HTTSC--CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCSSHHHH
T ss_pred             hhhhc--chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCCcHHHH
Confidence            99998  222222     344556666654312 12233445566666653221   11123679999999999999999


Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHH
Q 009568          389 KEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLE  439 (532)
Q Consensus       389 ~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~  439 (532)
                      ..++.+|..+.   .......        .+..+|-.++++++..++++..
T Consensus       393 ~AVL~TL~tfL---~~~~LRL--------IFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          393 TSILNMVKNLS---EESIDFL--------VAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             HHHHHHTTTCC---CHHHHHH--------HHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH---hhhHHHH--------HHHHHHhCCcHHHHHHHHHHHH
Confidence            99999998887   2222222        2234555788888888877664

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=96.44  E-value=0.16  Score=44.63  Aligned_cols=145  Identities=17%  Similarity=0.064  Sum_probs=106.2

Q ss_pred             cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhC-CCchhH
Q 009568          118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK-LLASPSDDVREQAVWALGNVAG-DSPRCR  195 (532)
Q Consensus       118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~-~~~~~~  195 (532)
                      .++.+..+.+++. .++|..|+..|+.. ....         ..++.+.. +-..++..|++.+..+++.++. ..+.. 
T Consensus        72 ~~~la~~L~~~~~-deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~-  139 (240)
T 3l9t_A           72 IKKLAFLAYQSDV-YQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK-  139 (240)
T ss_dssp             HHHHHHHHHTCSS-HHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT-
T ss_pred             HHHHHHHHHhCcc-hHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH-
Confidence            4566667777776 89999999998887 3111         23566666 5556889999999999999874 33321 


Q ss_pred             HHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCC
Q 009568          196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT  275 (532)
Q Consensus       196 ~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~  275 (532)
                             .++.+...+ .+++..+++.++..+.--+.. + ........++|.|..+..+++.-|+..+.|.|..++...
T Consensus       140 -------~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~  209 (240)
T 3l9t_A          140 -------ALPIIDEWL-KSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKF  209 (240)
T ss_dssp             -------THHHHHHHH-HCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred             -------HHHHHHHHh-cCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhC
Confidence                   455666666 888999999999887654443 2 122333567888888888889999999999999999988


Q ss_pred             hhHHHHHHH
Q 009568          276 NDKIQAVIE  284 (532)
Q Consensus       276 ~~~~~~~~~  284 (532)
                      ++.+..+++
T Consensus       210 Pd~V~~~~~  218 (240)
T 3l9t_A          210 PDLVKIELK  218 (240)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            877666555

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=96.26  E-value=0.042  Score=49.10  Aligned_cols=141  Identities=12%  Similarity=0.097  Sum_probs=100.2

Q ss_pred             chhHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCC-----HHHHHHHH----
Q 009568          342 KKSIKKEACWTISNITAGNRDQIQAVID-AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGT-----HEQIKYLV----  411 (532)
Q Consensus       342 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~-----~~~~~~l~----  411 (532)
                      +.....++..||..+.. +......++. .+.+..|...+.++.+.++..|+..|..++....     ......+-    
T Consensus        67 ~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~  145 (233)
T 2f31_A           67 DSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE  145 (233)
T ss_dssp             HHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHH
Confidence            34567788888888875 4555666664 5678888888988899999999988887776432     11222221    


Q ss_pred             --HcCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHH
Q 009568          412 --REGCIKPLCDLFV-CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEK  488 (532)
Q Consensus       412 --~~~~l~~L~~lL~-~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~  488 (532)
                        +..-...+++.++ ..+.+....++..+..++...+....       -......+...|..+.++.|...+++++...
T Consensus       146 ~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~-------R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Q  218 (233)
T 2f31_A          146 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF-------RVHIRSELMRLGLHQVLQELREIENEDMKVQ  218 (233)
T ss_dssp             HHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHH-------HHHHHHHHHHTTHHHHHHHHHHCCCHHHHHH
T ss_pred             hCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHH-------HHHHHHHHHHCChHHHHHHHhccCCHHHHHH
Confidence              2234667888887 45678888888888888877654331       1235677889999999999999999987655


Q ss_pred             HH
Q 009568          489 AV  490 (532)
Q Consensus       489 a~  490 (532)
                      ..
T Consensus       219 i~  220 (233)
T 2f31_A          219 LC  220 (233)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=95.80  E-value=0.67  Score=41.01  Aligned_cols=193  Identities=12%  Similarity=0.097  Sum_probs=122.7

Q ss_pred             CccchhhHHHHHHHhhcCCcchhHHHhhc-CchHHHHH-------HhcCCC-chhHHHHHHHHHH---HHhcCCHHHHHH
Q 009568          299 SPSVLIPALRTVGNIVTGDDFQTQCIITY-GALPYLLG-------LLTHSH-KKSIKKEACWTIS---NITAGNRDQIQA  366 (532)
Q Consensus       299 ~~~v~~~al~~L~nl~~~~~~~~~~~~~~-~~l~~L~~-------lL~~~~-~~~v~~~a~~~L~---nl~~~~~~~~~~  366 (532)
                      +++.|..|+.-|+.=-...++..-.++.+ |.+..|++       .+..+. ....-...|.+|+   .++ .+++....
T Consensus        14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvA-shpetr~~   92 (268)
T 2fv2_A           14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVA-SHPETRSA   92 (268)
T ss_dssp             STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHH-HCTTTHHH
T ss_pred             CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHH-cCcchhhH
Confidence            34457777777766544444444444443 44444432       122110 1222334444433   344 45777888


Q ss_pred             HHHcCCHHHHHHHHhcCc-----hhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHH
Q 009568          367 VIDAGLVGPLVNLLQNAE-----FDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENI  441 (532)
Q Consensus       367 l~~~~~i~~L~~ll~~~~-----~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l  441 (532)
                      ++++++.-.|..+|...+     ..+|-.++.+++.++...+++...++.+.++++.....++.+.+-...+|...+.+|
T Consensus        93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI  172 (268)
T 2fv2_A           93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI  172 (268)
T ss_dssp             HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            899988777888887642     468999999999999988999999999999999999999999999999999999999


Q ss_pred             HHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009568          442 LKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW  497 (532)
Q Consensus       442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~  497 (532)
                      +....-..-...   +.+.|.....-.|  ..+..+..++++.+-+-...+.-+..
T Consensus       173 L~dd~GL~YiC~---t~eRF~av~~vL~--~mV~~l~~~ps~RLLKhiircYlRLs  223 (268)
T 2fv2_A          173 LLDDTGLAYICQ---TYERFSHVAMILG--KMVLQLSKEPSARLLKHVVRCYLRLS  223 (268)
T ss_dssp             HHSHHHHHHHTS---SHHHHHHHHHHHH--HHHHHTTTSCCHHHHHHHHHHHHHHT
T ss_pred             hccchhHHHHHc---cHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHh
Confidence            876554332111   1222222221111  23445667888887765555444443

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=95.76  E-value=0.086  Score=50.85  Aligned_cols=161  Identities=13%  Similarity=0.094  Sum_probs=111.8

Q ss_pred             chhHHHhhcCchHHHHHHhcC----------CCchhHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHHHhcCchhH
Q 009568          319 FQTQCIITYGALPYLLGLLTH----------SHKKSIKKEACWTISNITAGNRDQIQAVID-AGLVGPLVNLLQNAEFDI  387 (532)
Q Consensus       319 ~~~~~~~~~~~l~~L~~lL~~----------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v  387 (532)
                      ...+.+. .+++..|+.+|..          ..+......++.||..+... ...+..++. ...+..|...+.+..+.+
T Consensus       101 sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~  178 (383)
T 3eg5_B          101 SWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNM  178 (383)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSS-HHHHHHHHTCSSHHHHHHHTCCTTSHHH
T ss_pred             HHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcc-hhhHHHHHcChHHHHHHHHHhCCCchHH
Confidence            3444444 4556666666631          11346778888999888754 556666664 567899999999999999


Q ss_pred             HHHHHHHHHHhhcCCC-----HHHHHHH------HHcCChHHHHhhcCC-CCHHHHHHHHHHHHHHHHhhhhhhhccCCC
Q 009568          388 KKEAAWAISNATSGGT-----HEQIKYL------VREGCIKPLCDLFVC-PDPRIVTVCLEGLENILKVGEAEKNMGTAT  455 (532)
Q Consensus       388 ~~~a~~aL~nl~~~~~-----~~~~~~l------~~~~~l~~L~~lL~~-~d~~v~~~al~~L~~l~~~~~~~~~~~~~~  455 (532)
                      +..|+..|..+|....     ......+      -+..-...++..|+. .+.+....++..+..++...+....     
T Consensus       179 ~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~-----  253 (383)
T 3eg5_B          179 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF-----  253 (383)
T ss_dssp             HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHH-----
T ss_pred             HHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHH-----
Confidence            9999999988886543     1112221      122447788888886 5778888888888888877654431     


Q ss_pred             ccchHHHHHHHHhccHHHHHHHhcCCCHHHHHH
Q 009568          456 ADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEK  488 (532)
Q Consensus       456 ~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~  488 (532)
                        -......+..+|..+.++.|...+++++...
T Consensus       254 --R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~Q  284 (383)
T 3eg5_B          254 --RVHIRSELMRLGLHQVLQELREIENEDMKVQ  284 (383)
T ss_dssp             --HHHHHHHHHHTTHHHHHHHHTTSCCHHHHHH
T ss_pred             --HHHHHHHHHHCChHHHHHHHhcCCChhHHHH
Confidence              2235677889999999999998888887654

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=95.57  E-value=0.14  Score=44.91  Aligned_cols=142  Identities=13%  Similarity=0.077  Sum_probs=101.4

Q ss_pred             cchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHH-hhCCCCccchhhHHHHHHHhhc-CCcch
Q 009568          243 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE-LLGHPSPSVLIPALRTVGNIVT-GDDFQ  320 (532)
Q Consensus       243 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~-lL~~~~~~v~~~al~~L~nl~~-~~~~~  320 (532)
                      ...++....+..++..+++..|+..|+.+ ...         ..+++.+.. +..++++.|+..+..+++.++. ..++ 
T Consensus        70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-  138 (240)
T 3l9t_A           70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-  138 (240)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-
T ss_pred             HHHHHHHHHHHhCcchHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-
Confidence            34556666677778889999999999887 211         135666666 5567889999999999999885 3332 


Q ss_pred             hHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC-----CHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHH
Q 009568          321 TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG-----NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAI  395 (532)
Q Consensus       321 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-----~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL  395 (532)
                             ..++.+.....++ +..||+.|...+.-.+..     +++.        +++.|-.+..+++.-||+...|+|
T Consensus       139 -------~~l~~~~~W~~d~-n~~VRR~Ase~~rpW~~~~~~k~dp~~--------ll~iL~~L~~D~s~yVrKSVan~L  202 (240)
T 3l9t_A          139 -------KALPIIDEWLKSS-NLHTRRAATEGLRIWTNRPYFKENPNE--------AIRRIADLKEDVSEYVRKSVGNAL  202 (240)
T ss_dssp             -------TTHHHHHHHHHCS-SHHHHHHHHHHTCSGGGSTTTTTCHHH--------HHHHHHTTTTCSCHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHhcCC-CHHHHHHHHHhhHHHhccchhhcCHHH--------HHHHHHHhcCChHHHHHHHHHHHH
Confidence                   2567888999998 999999998776443321     2221        355666666777899999999999


Q ss_pred             HHhhcCCCHHHHHHHHH
Q 009568          396 SNATSGGTHEQIKYLVR  412 (532)
Q Consensus       396 ~nl~~~~~~~~~~~l~~  412 (532)
                      ..++.. +|+.+..+++
T Consensus       203 rD~SK~-~Pd~V~~~~~  218 (240)
T 3l9t_A          203 RDISKK-FPDLVKIELK  218 (240)
T ss_dssp             HHHHTT-CHHHHHHHHH
T ss_pred             HHHhhh-CHHHHHHHHH
Confidence            999876 5665554443

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=95.44  E-value=0.64  Score=52.35  Aligned_cols=293  Identities=11%  Similarity=0.067  Sum_probs=164.8

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhhCC-----Cchh
Q 009568          122 FVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL--ASPSDDVREQAVWALGNVAGD-----SPRC  194 (532)
Q Consensus       122 Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL--~~~~~~v~~~a~~~L~nl~~~-----~~~~  194 (532)
                      +...+....+...|.+|-..|..+-. ++         .+...+...|  .+.+..+|..|+..|.+....     ++..
T Consensus        17 l~~~~~p~~~~~~r~~Ae~~L~~~~~-~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~   86 (1204)
T 3a6p_A           17 VTVMMDPNSTQRYRLEALKFCEEFKE-KC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLE   86 (1204)
T ss_dssp             HHHHHCTTCCHHHHHHHHHHHHHHHH-HC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHH
T ss_pred             HHHHhCCCCChHHHHHHHHHHHHHHh-Cc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHH
Confidence            33444432236788888888877654 22         2334444433  346789999999999987632     2222


Q ss_pred             HHHHHhcCChHHHHHHhhhh------hhhHHHHHHHHHhhhccCCC-CCCCcccccchHHHHHHhhcCCCHHHHHHHHHH
Q 009568          195 RDLVLSQGALIPLLAQLNER------AKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWA  267 (532)
Q Consensus       195 ~~~~~~~~~l~~L~~ll~~~------~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~  267 (532)
                      +..+ .    ..++..+...      .+..++..++.++..++... |    .....+++.++.++.+ ++.....++.+
T Consensus        87 k~~I-r----~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p----~~Wp~ll~~L~~~~~~-~~~~~e~~L~i  156 (1204)
T 3a6p_A           87 KVYL-K----NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP----QHWPDMLIELDTLSKQ-GETQTELVMFI  156 (1204)
T ss_dssp             HHHH-H----HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST----TTCTTHHHHHHHHHHT-CHHHHHHHHHH
T ss_pred             HHHH-H----HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc----ccchHHHHHHHHHhcC-CHHHHHHHHHH
Confidence            2222 2    2344444222      35677888888898888764 3    2346788888888866 55556777777


Q ss_pred             HHHhccC-------ChhHHHH---HHHh---CchHHHHHhhCC-------------------CCccchhhHHHHHHHhhc
Q 009568          268 LSYLSDG-------TNDKIQA---VIEA---GVCPRLVELLGH-------------------PSPSVLIPALRTVGNIVT  315 (532)
Q Consensus       268 L~~l~~~-------~~~~~~~---~~~~---~~l~~L~~lL~~-------------------~~~~v~~~al~~L~nl~~  315 (532)
                      |..++..       ...+...   .+..   .+++.+..++..                   .+..+...++.++.+...
T Consensus       157 L~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~  236 (1204)
T 3a6p_A          157 LLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYID  236 (1204)
T ss_dssp             HHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHh
Confidence            7777632       1111111   1111   223333333322                   123456677777776654


Q ss_pred             CCcchhHHHhhcC--chHHHHHHhcCCCchhHHHHHHHHHHHHhcCC--HHHHHHHHHc---CCHHHHHHHHh-------
Q 009568          316 GDDFQTQCIITYG--ALPYLLGLLTHSHKKSIKKEACWTISNITAGN--RDQIQAVIDA---GLVGPLVNLLQ-------  381 (532)
Q Consensus       316 ~~~~~~~~~~~~~--~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~--~~~~~~l~~~---~~i~~L~~ll~-------  381 (532)
                      --+  ...+.+..  +++.+..++.   ++.++..|+.+|..++...  ++....++..   ..+..++....       
T Consensus       237 Wi~--~~~i~~~~~~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~  311 (1204)
T 3a6p_A          237 WVS--MSHITAENCKLLEILCLLLN---EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGL  311 (1204)
T ss_dssp             TSC--HHHHHTTTSHHHHHHHHGGG---CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSC
T ss_pred             ccC--HHHHHhccchHHHHHHHHcC---CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCC
Confidence            322  12333432  6777776664   5679999999999999732  4433333321   01224444432       


Q ss_pred             -cCchhHHHHHHHHHHHhhcCCCHHHHHHHHH-----------cCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 009568          382 -NAEFDIKKEAAWAISNATSGGTHEQIKYLVR-----------EGCIKPLCDLFVCPDPRIVTVCLEGLENILKV  444 (532)
Q Consensus       382 -~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~-----------~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~  444 (532)
                       ..+.++.+..+..+..+..    . ...++.           .++++.+..+..+++..+...++.....+++.
T Consensus       312 ~e~d~e~~k~l~~ll~~lg~----~-l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~  381 (1204)
T 3a6p_A          312 VEKHYVFLKRLCQVLCALGN----Q-LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH  381 (1204)
T ss_dssp             CHHHHHHHHHHHHHHHHHHH----H-HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred             ccHHHHHHHHHHHHHHHHHH----H-HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence             1245677777777777652    1 111221           13467777777777777777777766656554

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=95.11  E-value=2.1  Score=48.18  Aligned_cols=300  Identities=10%  Similarity=0.054  Sum_probs=165.3

Q ss_pred             cHHHHHhhhcCC--ChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhc-CCCCHHHHHHHHHHHHHHhcC---
Q 009568           75 SLPAMVAGVWSD--DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLM-REDYPQLQFEAAWALTNIASG---  148 (532)
Q Consensus        75 ~l~~lv~~L~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~-~~~~~~~~~~a~~~L~~l~~~---  148 (532)
                      .+..++..+.++  +...+.+|-..|..+-..   +        ...+.+...|. ...++.+|.-|+..|.+....   
T Consensus        12 ~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~---p--------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~   80 (1204)
T 3a6p_A           12 QLVKAVTVMMDPNSTQRYRLEALKFCEEFKEK---C--------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWN   80 (1204)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH---C--------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGG
T ss_pred             HHHHHHHHHhCCCCChHHHHHHHHHHHHHHhC---c--------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcc
Confidence            455666655555  667788888888877442   1        13444444443 333389999999999987642   


Q ss_pred             --ChhhHHHHHhCCChHHHHHhhCC---CCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHHHhhhhhhhHHHHH
Q 009568          149 --TSENTKVVIDHGAVPIFVKLLAS---PSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNERAKLSMLRN  222 (532)
Q Consensus       149 --~~~~~~~i~~~g~i~~L~~lL~~---~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~  222 (532)
                        +++.+..+. ..++..+......   ....++...+.++..|+... |..-     .+.++.++.++. + ++.....
T Consensus        81 ~l~~e~k~~Ir-~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W-----p~ll~~L~~~~~-~-~~~~~e~  152 (1204)
T 3a6p_A           81 GMSRLEKVYLK-NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW-----PDMLIELDTLSK-Q-GETQTEL  152 (1204)
T ss_dssp             GSCHHHHHHHH-HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC-----TTHHHHHHHHHH-T-CHHHHHH
T ss_pred             cCCHHHHHHHH-HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc-----hHHHHHHHHHhc-C-CHHHHHH
Confidence              233443333 3344444433211   35788998999999887431 2110     134666776663 2 3345666


Q ss_pred             HHHHhhhccCCC-CCCC--ccc-----------ccchHHHHHHhhcC-------------------CCHHHHHHHHHHHH
Q 009568          223 ATWTLSNFCRGK-PQPP--FDQ-----------VRPALPALAQLVHS-------------------NDEEVLTDACWALS  269 (532)
Q Consensus       223 a~~~L~~L~~~~-~~~~--~~~-----------~~~~l~~L~~lL~~-------------------~d~~v~~~a~~~L~  269 (532)
                      ++.+|..|+... ....  ...           ...+++.+..++..                   .+..+...++.++.
T Consensus       153 ~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~  232 (1204)
T 3a6p_A          153 VMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLA  232 (1204)
T ss_dssp             HHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHH
Confidence            777777776542 1110  000           11334444444432                   12346677777777


Q ss_pred             HhccCChhHHHHHHHhC--chHHHHHhhCCCCccchhhHHHHHHHhhcCCc--chhHHHhh---cCchHHHHHHhc----
Q 009568          270 YLSDGTNDKIQAVIEAG--VCPRLVELLGHPSPSVLIPALRTVGNIVTGDD--FQTQCIIT---YGALPYLLGLLT----  338 (532)
Q Consensus       270 ~l~~~~~~~~~~~~~~~--~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~--~~~~~~~~---~~~l~~L~~lL~----  338 (532)
                      +....-+-  ..+.+..  +++.+..++.  ++.++..|+.||..++....  .....++.   ...+..++..+.    
T Consensus       233 ~~l~Wi~~--~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~  308 (1204)
T 3a6p_A          233 GYIDWVSM--SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADG  308 (1204)
T ss_dssp             TTTTTSCH--HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCC
T ss_pred             HHHhccCH--HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCC
Confidence            66554331  2333332  6777776665  46799999999999997542  11111221   111233444432    


Q ss_pred             ---CCCchhHHHHHHHHHHHHhcCCHHHHHHHHH-----------cCCHHHHHHHHhcCchhHHHHHHHHHHHhhcC
Q 009568          339 ---HSHKKSIKKEACWTISNITAGNRDQIQAVID-----------AGLVGPLVNLLQNAEFDIKKEAAWAISNATSG  401 (532)
Q Consensus       339 ---~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-----------~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~  401 (532)
                         +..+.++.+..+..+..+..    ....++.           .++++.++.++.+++..+-..++.....+...
T Consensus       309 ~~~~e~d~e~~k~l~~ll~~lg~----~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~  381 (1204)
T 3a6p_A          309 GGLVEKHYVFLKRLCQVLCALGN----QLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH  381 (1204)
T ss_dssp             CSCCHHHHHHHHHHHHHHHHHHH----HHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred             CCCccHHHHHHHHHHHHHHHHHH----HHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence               11135667777777777752    1222222           13577778788777777777776655555443

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=94.67  E-value=1.1  Score=43.22  Aligned_cols=139  Identities=12%  Similarity=0.097  Sum_probs=99.2

Q ss_pred             chhHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHH-----HHHHHH----
Q 009568          342 KKSIKKEACWTISNITAGNRDQIQAVID-AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHE-----QIKYLV----  411 (532)
Q Consensus       342 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~-----~~~~l~----  411 (532)
                      +.....+++.||..+... ...+..++. .+.+..|...+.+..+.++..++..|..+|....+.     ....+-    
T Consensus        71 d~~~~~~~l~CLkalmN~-~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~  149 (386)
T 2bnx_A           71 DSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE  149 (386)
T ss_dssp             HHHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCC-HHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHH
Confidence            346677888899888754 455666664 567888998898889999999988887777643311     111111    


Q ss_pred             --HcCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHH
Q 009568          412 --REGCIKPLCDLFV-CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEK  488 (532)
Q Consensus       412 --~~~~l~~L~~lL~-~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~  488 (532)
                        +..-...+++.+. ..+.+....++..+..++...+....       -......|..+|..+.++.|....++++...
T Consensus       150 ~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~-------R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q  222 (386)
T 2bnx_A          150 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF-------RVHIRSELMRLGLHQVLQELREIENEDMKVQ  222 (386)
T ss_dssp             HHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHH-------HHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred             hCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHH-------HHHHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence              2234667888777 45678888888888888887665432       2236677889999999999999999888655

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=94.62  E-value=1.1  Score=43.64  Aligned_cols=122  Identities=18%  Similarity=0.190  Sum_probs=86.8

Q ss_pred             hhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHh
Q 009568          215 AKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL  294 (532)
Q Consensus       215 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l  294 (532)
                      .+....+-|+..+..+...-|    ......+..++.+..+.|..|+..|+..|-.+|..  +.+.     .+...|+++
T Consensus        40 g~~k~K~LaaQ~I~kffk~FP----~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~-----kiaDvL~Ql  108 (507)
T 3u0r_A           40 GGTKEKRLAAQFIPKFFKHFP----ELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLP-----RVADILTQL  108 (507)
T ss_dssp             SCHHHHHHHHHHHHHHGGGCG----GGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHH-----HHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhCh----hhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhh-----hHHHHHHHH
Confidence            357777888888887776643    23356788899999999999999999999999976  3333     566788999


Q ss_pred             hCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHH
Q 009568          295 LGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNI  356 (532)
Q Consensus       295 L~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl  356 (532)
                      |...++.-...+-.+|..+...++.        +.+..+...+..+ ++.+|..+...|..-
T Consensus       109 Lqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~-~e~~Rer~lkFi~~k  161 (507)
T 3u0r_A          109 LQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQG-EDIVRERAIKFLSTK  161 (507)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHS-CHHHHHHHHHHHHHH
T ss_pred             HhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHccc-chHHHHHHHHHHHHH
Confidence            9988877777677777766654442        2234444444445 677888877777543

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=94.55  E-value=0.6  Score=43.24  Aligned_cols=173  Identities=12%  Similarity=0.060  Sum_probs=101.9

Q ss_pred             cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCC----hHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCc
Q 009568          118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGA----VPIFVKLLAS-PSDDVREQAVWALGNVAGDSP  192 (532)
Q Consensus       118 ~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~----i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~  192 (532)
                      .+..+.++++.+  .+.++-++.++.-++. ++.....+.+...    +..++..+.+ ..+..+-.++++++|+.....
T Consensus       104 ~l~~l~kil~WP--~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~  180 (304)
T 3ebb_A          104 QLQILWKAINCP--EDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA  180 (304)
T ss_dssp             HHHHHHHHHTSC--TTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH
T ss_pred             HHHHHHHHHcCC--HHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch
Confidence            456666666443  3567777777777665 5555555544322    2233344443 346678899999999976654


Q ss_pred             hhHHHHHhcCChHHHHHHhh---hhhhhHHHHHHHHHhhhccCCC-CCCCcccccchHHHHHHhhc-CCCHHHHHHHHHH
Q 009568          193 RCRDLVLSQGALIPLLAQLN---ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVH-SNDEEVLTDACWA  267 (532)
Q Consensus       193 ~~~~~~~~~~~l~~L~~ll~---~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~~  267 (532)
                       .+..+..  ....++..+.   .+.+..++..++.++.|++-.. ..........++..+..++. ..|.+....++.+
T Consensus       181 -g~~~l~~--~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvA  257 (304)
T 3ebb_A          181 -GQKLMMS--QRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVA  257 (304)
T ss_dssp             -HHHHHHH--THHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             -hHHHHHH--HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence             5665554  2344444442   2346677878888888887643 11122223335555556664 3588999999999


Q ss_pred             HHHhccCChhHHHHHHHhCchHHHHHhhC
Q 009568          268 LSYLSDGTNDKIQAVIEAGVCPRLVELLG  296 (532)
Q Consensus       268 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~  296 (532)
                      |+++...+.+..+.....++-..+-....
T Consensus       258 LGtL~~~~~~~~~lak~l~~~~~v~~~~~  286 (304)
T 3ebb_A          258 LGTLISDDSNAVQLAKSLGVDSQIKKYSS  286 (304)
T ss_dssp             HHHHHTTCHHHHHHHHHTTHHHHGGGGGG
T ss_pred             HHHHHhCChhHHHHHHHcCHHHHHHHHHh
Confidence            99999776544333333344443434443

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=94.26  E-value=0.18  Score=46.73  Aligned_cols=141  Identities=11%  Similarity=0.088  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHHhcCCCCCchhHhh-hCC----cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhC--CC
Q 009568           89 SLQLEATTQFRKLLSIERSPPIEEVI-QSG----VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH--GA  161 (532)
Q Consensus        89 ~~~~~a~~~l~~l~~~~~~~~~~~~i-~~g----~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~--g~  161 (532)
                      +.++.++..+|-.+..   +...... +.+    ++..+...+.+...+..+..++++++|+.. ++..+..+...  .+
T Consensus       117 ~~~fPvLDLlRl~~l~---p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~-~~~g~~~l~~~~~~i  192 (304)
T 3ebb_A          117 DIVFPALDILRLSIKH---PSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFV-GQAGQKLMMSQRESL  192 (304)
T ss_dssp             TTCHHHHHHHHHHTTS---HHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGG-SHHHHHHHHHTHHHH
T ss_pred             HhHHHHHHHHHHHHcC---ccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccC-CchhHHHHHHHHHHH
Confidence            4556666666666542   2222222 221    233344555444447789999999999998 66666666643  24


Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCC
Q 009568          162 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG  233 (532)
Q Consensus       162 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~  233 (532)
                      ++.+...+.+++..++..++.++.|++......++.-....++..+..++....+.+....++-+|.+|...
T Consensus       193 l~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~  264 (304)
T 3ebb_A          193 MSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISD  264 (304)
T ss_dssp             HHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhC
Confidence            445555555678999999999999997521110000000112334444454445778888888888888865

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=94.23  E-value=2.2  Score=47.23  Aligned_cols=172  Identities=15%  Similarity=0.135  Sum_probs=109.3

Q ss_pred             hHHHHHHhhhh---hhhHHHHHHHHHhhhcc----CCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh
Q 009568          204 LIPLLAQLNER---AKLSMLRNATWTLSNFC----RGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN  276 (532)
Q Consensus       204 l~~L~~ll~~~---~~~~~~~~a~~~L~~L~----~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~  276 (532)
                      +..+..++...   .++.++..++.+++.|.    ...+......+..+...+...+...+.+-+..++.+|+|+...  
T Consensus       393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p--  470 (1056)
T 1lsh_A          393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP--  470 (1056)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG--
T ss_pred             HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh--
Confidence            44455555322   24556666666665554    3333333344566666777777788888889999999998642  


Q ss_pred             hHHHHHHHhCchHHHHHhhCC-----C--CccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhc-CCCchhHHHH
Q 009568          277 DKIQAVIEAGVCPRLVELLGH-----P--SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLT-HSHKKSIKKE  348 (532)
Q Consensus       277 ~~~~~~~~~~~l~~L~~lL~~-----~--~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~~v~~~  348 (532)
                               ..++.|..++..     .  ...++..|+++|..++...+...        -+.+++++. ...++++|-.
T Consensus       471 ---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v--------~~il~~i~~n~~e~~EvRia  533 (1056)
T 1lsh_A          471 ---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVLPIFLNVAIKSELRIR  533 (1056)
T ss_dssp             ---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHHHHHHCTTSCHHHHHH
T ss_pred             ---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH--------HHHHHHHhcCCCCChHHHHH
Confidence                     346667777642     1  23477889999999986544222        346777773 2237899999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc-CchhHHHHHHHHHHHhhcCCCH
Q 009568          349 ACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN-AEFDIKKEAAWAISNATSGGTH  404 (532)
Q Consensus       349 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~nl~~~~~~  404 (532)
                      |+..|.... .+..         .+..+...+.. .+..|.......|.+++....+
T Consensus       534 A~~~Lm~t~-P~~~---------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P  580 (1056)
T 1lsh_A          534 SCIVFFESK-PSVA---------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP  580 (1056)
T ss_dssp             HHHHHHHTC-CCHH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHC-cCHH---------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence            988885432 2222         33455555655 4778888888888888887655

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=94.03  E-value=4.3  Score=38.68  Aligned_cols=88  Identities=10%  Similarity=0.138  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHh
Q 009568           89 SLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKL  168 (532)
Q Consensus        89 ~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l  168 (532)
                      ..+...+..+++++... ++.    .-.++++.++++-.+.+ .++|.-.+..|...+....+....     +++.|..+
T Consensus        40 ~~Kl~~L~q~~EL~l~~-dps----Ll~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~el~~~-----~l~~L~~L  108 (386)
T 3o2t_A           40 DSKITVLKQVQELIINK-DPT----LLDNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIELLLK-----LIANLNML  108 (386)
T ss_dssp             THHHHHHHHHHHHHHTT-CGG----GGGGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcc-CHH----HHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence            46888999999986642 232    22458999999988887 999999999999888755555433     45788888


Q ss_pred             hCCCCHHHHHHHHHHHHHh
Q 009568          169 LASPSDDVREQAVWALGNV  187 (532)
Q Consensus       169 L~~~~~~v~~~a~~~L~nl  187 (532)
                      |.+.++.+...++.+.+++
T Consensus       109 L~d~d~~V~K~~I~~~tsl  127 (386)
T 3o2t_A          109 LRDENVNVVKKAILTMTQL  127 (386)
T ss_dssp             HTCSSHHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHH
Confidence            8888999999999888887

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=93.85  E-value=1.3  Score=42.68  Aligned_cols=156  Identities=12%  Similarity=0.109  Sum_probs=100.4

Q ss_pred             HHHHhhhcCCCh-HHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcC----------CCCHHHHHHHHHHHHHH
Q 009568           77 PAMVAGVWSDDS-SLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR----------EDYPQLQFEAAWALTNI  145 (532)
Q Consensus        77 ~~lv~~L~s~~~-~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~----------~~~~~~~~~a~~~L~~l  145 (532)
                      ..++..|.++.. ......+..|+.-+......=++.++ .+++..|+.+|..          ..+...+..++.||..+
T Consensus        69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal  147 (383)
T 3eg5_B           69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF  147 (383)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence            345666665532 22345677777777643222256666 6678888888741          11257889999999999


Q ss_pred             hcCChhhHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hh-HHHHH----------hcCChHHHHHHhh
Q 009568          146 ASGTSENTKVVID-HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP-RC-RDLVL----------SQGALIPLLAQLN  212 (532)
Q Consensus       146 ~~~~~~~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~-~~~~~----------~~~~l~~L~~ll~  212 (532)
                      .. +......++. ...+..|...|.++++.++..++..|+.+|.... .. ...++          +..-+..++..+.
T Consensus       148 mN-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~  226 (383)
T 3eg5_B          148 MN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK  226 (383)
T ss_dssp             TS-SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTS
T ss_pred             hc-chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence            87 5555555555 4678999999999999999999999999986543 21 22222          2334666677774


Q ss_pred             hhhhhHHHHHHHHHhhhccCCC
Q 009568          213 ERAKLSMLRNATWTLSNFCRGK  234 (532)
Q Consensus       213 ~~~~~~~~~~a~~~L~~L~~~~  234 (532)
                      ...+.+....++..+-.+....
T Consensus       227 ~~~~~e~~~~~m~lIN~li~~~  248 (383)
T 3eg5_B          227 SGTSIALKVGCLQLINALITPA  248 (383)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTC
T ss_pred             ccCcHHHHHHHHHHHHHHHcCC
Confidence            4445566666655555555553

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=93.79  E-value=3.6  Score=36.89  Aligned_cols=100  Identities=9%  Similarity=0.077  Sum_probs=71.9

Q ss_pred             HHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 009568           77 PAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVV  156 (532)
Q Consensus        77 ~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i  156 (532)
                      -.+++.-+....+.+...+..++.++... ++.   +. ..+++.++.+..+.+ .++|.-.+..|...+...++.... 
T Consensus        18 ~~lln~A~~~~~~~kl~~L~qa~el~~~~-dp~---ll-~~~l~~il~~~~~~~-~~vrk~~~~Fi~e~~~~k~~l~~~-   90 (257)
T 3gs3_A           18 VDWCNELVIASPSTKCELLAKVQETVLGS-CAE---LA-EEFLESVLSLAHDSN-MEVRKQVVAFVEQVCKVKVELLPH-   90 (257)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHTTT-TGG---GH-HHHHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHHH-
T ss_pred             HHHHHHhhhcCcHHHHHHHHHHHHHHHcc-CHh---HH-HHHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            34444444423368889999999987653 222   11 237888888776766 899999999999988655554443 


Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 009568          157 IDHGAVPIFVKLLASPSDDVREQAVWALGNV  187 (532)
Q Consensus       157 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl  187 (532)
                          +++.|..++.++++.+...++.+.+++
T Consensus        91 ----~l~~L~~Ll~d~d~~V~K~~I~~~~~i  117 (257)
T 3gs3_A           91 ----VINVVSMLLRDNSAQVIKRVIQACGSI  117 (257)
T ss_dssp             ----HHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence                457888889888999999999888876

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=93.78  E-value=1.1  Score=39.71  Aligned_cols=97  Identities=11%  Similarity=0.121  Sum_probs=67.0

Q ss_pred             HHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcC----C------CCHHHHHHHHHHHHHHhcCChhhHHHHHh-CCC
Q 009568           93 EATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR----E------DYPQLQFEAAWALTNIASGTSENTKVVID-HGA  161 (532)
Q Consensus        93 ~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~----~------~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~  161 (532)
                      .-+..|+..+...+..=++.+ ..+++..|+.+|..    .      .+.+.+..++.||..+.. +......++. .++
T Consensus        20 ~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~   97 (233)
T 2f31_A           20 SCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEG   97 (233)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSH
T ss_pred             HHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHH
Confidence            345555555553211224555 45677777777642    1      125788999999999987 5555566655 467


Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 009568          162 VPIFVKLLASPSDDVREQAVWALGNVAGDS  191 (532)
Q Consensus       162 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~  191 (532)
                      +..|...|.++++.++..++..|+.+|..+
T Consensus        98 i~~l~~~L~s~~~~~r~~~leLL~~lc~~~  127 (233)
T 2f31_A           98 ILLLVRAMDPAVPNMMIDAAKLLSALCILP  127 (233)
T ss_dssp             HHHHHTTCCTTSHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHHHHHhCC
Confidence            888999999999999999999999888544

>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*

Probab=92.39  E-value=2  Score=41.14  Aligned_cols=259  Identities=13%  Similarity=0.069  Sum_probs=119.3

Q ss_pred             CCCHHHHHHHHHHHHHHhcC---ChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChH
Q 009568          129 EDYPQLQFEAAWALTNIASG---TSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALI  205 (532)
Q Consensus       129 ~~~~~~~~~a~~~L~~l~~~---~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~  205 (532)
                      +.||.++. +...|..+...   ++...+..++...+..|+.++.++|+.=|+..-.+|..+-+.-...|..+.. .+-.
T Consensus        96 ~sWpHLql-VYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk-~inn  173 (403)
T 3fga_B           96 AAWPHLQL-VYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINN  173 (403)
T ss_dssp             TTHHHHHH-HHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHH
T ss_pred             cCcHHHHH-HHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHH
Confidence            34566554 33444444331   2333344455567888999999999999999999998886554444443322 1223


Q ss_pred             HHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCc-ccccchHHHHHHhhcCCCHHH-HHHHHHHHHHhccCChhHHHHHH
Q 009568          206 PLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF-DQVRPALPALAQLVHSNDEEV-LTDACWALSYLSDGTNDKIQAVI  283 (532)
Q Consensus       206 ~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~-~~~~~~l~~L~~lL~~~d~~v-~~~a~~~L~~l~~~~~~~~~~~~  283 (532)
                      .+.+.+.......-....+.+++.+..+-..+-. ....-...+|+++.....-.. -.....|+......++.....+ 
T Consensus       174 if~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~v-  252 (403)
T 3fga_B          174 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-  252 (403)
T ss_dssp             HHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHH-
T ss_pred             HHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHH-
Confidence            3334332221112222344444444444322222 122223344555544433221 1223333333333333332211 


Q ss_pred             HhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCc-chhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHH-----HHh
Q 009568          284 EAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD-FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTIS-----NIT  357 (532)
Q Consensus       284 ~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~-----nl~  357 (532)
                          +..|+.+=-..+..-...-+.-+..+....+ ...+.+ ...+...+...+.++ +..|-..|+....     ++.
T Consensus       253 ----i~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i-~~~lf~~la~ci~S~-hfqVAErAL~~wnNe~i~~li  326 (403)
T 3fga_B          253 ----VMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKI-MEPLFRQLAKCVSSP-HFQVAERALYYWNNEYIMSLI  326 (403)
T ss_dssp             ----HHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHH-HHHHHHHHHHHHTCS-CHHHHHHHHGGGGCHHHHHHH
T ss_pred             ----HHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHHHHCCC-CHHHHHHHHHHhccHHHHHHH
Confidence                2222221111222222222333445554333 222222 224566777888887 7778777765542     222


Q ss_pred             cCCHHHHHHHHHcCCHHHHHHHHhcC-chhHHHHHHHHHHHhhc
Q 009568          358 AGNRDQIQAVIDAGLVGPLVNLLQNA-EFDIKKEAAWAISNATS  400 (532)
Q Consensus       358 ~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~nl~~  400 (532)
                      ..+...+-.+    ++|.|.+..... +..++..+..++.-+..
T Consensus       327 ~~n~~~IlPi----i~p~L~~~~~~HWn~~v~~l~~~vlk~l~e  366 (403)
T 3fga_B          327 SDNAAKILPI----MFPSLYRNSKTHWNKTIHGLIYNALKLFME  366 (403)
T ss_dssp             HTTHHHHHHH----HHHHHHHTTSCCSCHHHHHHHHHHHHHHHT
T ss_pred             HHhHHHHHHH----HHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            2222222111    233333333333 67788888777766644

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=91.93  E-value=13  Score=40.98  Aligned_cols=239  Identities=15%  Similarity=0.125  Sum_probs=138.0

Q ss_pred             cHHHHHhhhcCCChHHHHHHHHHHHHHhcCC--CCCchhHhhhCC---cHHHHHHhhcCCCCHHHHHHHHHHHHHHhc--
Q 009568           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIE--RSPPIEEVIQSG---VVPRFVEFLMREDYPQLQFEAAWALTNIAS--  147 (532)
Q Consensus        75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~--~~~~~~~~i~~g---~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~--  147 (532)
                      .+-.|++.|+.-+.+........+.   ...  ...-.+.+...|   .+..+.+++.+.. ... .+|+++|.....  
T Consensus       312 ~f~~Lv~~lR~~~~e~L~~l~~~~~---~~~~~r~~~lDal~~aGT~~a~~~i~~~i~~~~-l~~-~ea~~~l~~~~~~~  386 (1056)
T 1lsh_A          312 KFLRLTAFLRNVDAGVLQSIWHKLH---QQKDYRRWILDAVPAMATSEALLFLKRTLASEQ-LTS-AEATQIVASTLSNQ  386 (1056)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHT---TSHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTC-SCH-HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHh---ccHHHHHHHHHHhHhcCCHHHHHHHHHHHHcCC-CCH-HHHHHHHHHhhccC
Confidence            4556677777655443333333221   100  001123333333   3445566666654 222 224444443222  


Q ss_pred             -CChhhHHHHHhCCChHHHHHhhCC----CCHHHHHHHHHHHHHhhC----CCchhHHHHHhcCChHHHHHHhh---hhh
Q 009568          148 -GTSENTKVVIDHGAVPIFVKLLAS----PSDDVREQAVWALGNVAG----DSPRCRDLVLSQGALIPLLAQLN---ERA  215 (532)
Q Consensus       148 -~~~~~~~~i~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~nl~~----~~~~~~~~~~~~~~l~~L~~ll~---~~~  215 (532)
                       .+++         .+..+..++.+    .++.+++.++.+++.++.    ..+.+.     ...++.+...+.   ...
T Consensus       387 ~Pt~e---------~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~-----~~~v~~i~~~l~~~~~~~  452 (1056)
T 1lsh_A          387 QATRE---------SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCP-----DELLQPLHDLLSQSSDRA  452 (1056)
T ss_dssp             CCCHH---------HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCC-----GGGTHHHHHHHHHHHHTT
T ss_pred             CCCHH---------HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCC-----HHHHHHHHHHHHHHHhcC
Confidence             2222         23555566655    467888888888888752    222211     122455555542   334


Q ss_pred             hhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcC-------CCHHHHHHHHHHHHHhccCChhHHHHHHHhCch
Q 009568          216 KLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHS-------NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVC  288 (532)
Q Consensus       216 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~-------~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l  288 (532)
                      +.+-...++.+|.|+...          ..++.|.+++..       ....++..|+|+|..+....+..+.        
T Consensus       453 ~~~~~~~~LkaLGN~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------  514 (1056)
T 1lsh_A          453 KEEEIVLALKALGNAGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------  514 (1056)
T ss_dssp             CHHHHHHHHHHHHHHTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------
T ss_pred             ChHHHHHHHHHhhccCCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------
Confidence            566678889999998863          467778787742       1356888999999999876554433        


Q ss_pred             HHHHHhh--CCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCC
Q 009568          289 PRLVELL--GHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN  360 (532)
Q Consensus       289 ~~L~~lL--~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~  360 (532)
                      +.++++.  ...+.++|..|+..|...   .+..       ..+..+...+....+..|.......|.+++..+
T Consensus       515 ~il~~i~~n~~e~~EvRiaA~~~Lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~  578 (1056)
T 1lsh_A          515 EIVLPIFLNVAIKSELRIRSCIVFFES---KPSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS  578 (1056)
T ss_dssp             HHHHHHHHCTTSCHHHHHHHHHHHHHT---CCCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHhcCCCCChHHHHHHHHHHHHH---CcCH-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence            4456666  345678888888777422   2212       235567777776558889988888999998743

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=91.30  E-value=0.91  Score=41.32  Aligned_cols=134  Identities=13%  Similarity=0.113  Sum_probs=87.5

Q ss_pred             chhhHHHHHHHhhcCCcchhHHHh-hcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH--cCCHHHHHH
Q 009568          302 VLIPALRTVGNIVTGDDFQTQCII-TYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID--AGLVGPLVN  378 (532)
Q Consensus       302 v~~~al~~L~nl~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--~~~i~~L~~  378 (532)
                      ....|+..|.-++..-....+.+- +..++..|+ +.... .+.++..|+.+|+...+.+|..+..+.+  ..++..++.
T Consensus        44 ~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~-~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~  121 (315)
T 3qml_C           44 RLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENL-PLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMA  121 (315)
T ss_dssp             HHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccC-ChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHH
Confidence            455677777777754444443332 223333343 22334 6789999999999999999999988875  355666665


Q ss_pred             HHhc-------CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCC--CHHHHHHHHHHHHHHHH
Q 009568          379 LLQN-------AEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCP--DPRIVTVCLEGLENILK  443 (532)
Q Consensus       379 ll~~-------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~--d~~v~~~al~~L~~l~~  443 (532)
                      -|..       ...-+++.-+.+|..++.... .+     ....+..|..++...  ++.++..++..+..++.
T Consensus       122 ~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~-~F-----~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~  189 (315)
T 3qml_C          122 ALSNLNDSNHRSSNILIKRYLSILNELPVTSE-DL-----PIYSTVVLQNVYERNNKDKQLQIKVLELISKILK  189 (315)
T ss_dssp             HHHHHHCC--CCCHHHHHHHHHHHHHSCCCST-TC-------CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcccchhHHHHHHHHHHHHHHhcChH-hh-----hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence            5543       233566777777777777531 11     123556666666655  89999999999998885

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=90.87  E-value=4.9  Score=38.59  Aligned_cols=154  Identities=12%  Similarity=0.130  Sum_probs=92.5

Q ss_pred             HHhhhcCCChHH-HHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcC----C------CCHHHHHHHHHHHHHHhc
Q 009568           79 MVAGVWSDDSSL-QLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR----E------DYPQLQFEAAWALTNIAS  147 (532)
Q Consensus        79 lv~~L~s~~~~~-~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~----~------~~~~~~~~a~~~L~~l~~  147 (532)
                      +++.|.++.... ....+..|+..+...+..-++.+. .+++..|+..|..    .      .....+..++.||..+..
T Consensus         9 yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN   87 (386)
T 2bnx_A            9 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN   87 (386)
T ss_dssp             HHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC
Confidence            445555433221 223455666555542112245554 4667777776641    1      125789999999999987


Q ss_pred             CChhhHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hh-HHHHH----------hcCChHHHHHHhhhh
Q 009568          148 GTSENTKVVID-HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP-RC-RDLVL----------SQGALIPLLAQLNER  214 (532)
Q Consensus       148 ~~~~~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~-~~~~~----------~~~~l~~L~~ll~~~  214 (532)
                       +......++. .+++..|...|.++++.++..++..|..+|.... .. ...++          +..-+.+++..+..+
T Consensus        88 -~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~  166 (386)
T 2bnx_A           88 -NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG  166 (386)
T ss_dssp             -SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT
T ss_pred             -CHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcC
Confidence             5555555555 4678999999998999999999999988886443 11 22221          223455566666444


Q ss_pred             hhhHHHHHHHHHhhhccCCC
Q 009568          215 AKLSMLRNATWTLSNFCRGK  234 (532)
Q Consensus       215 ~~~~~~~~a~~~L~~L~~~~  234 (532)
                      .+.+....++..+-.+....
T Consensus       167 ~~~e~~~a~m~lIN~lv~~~  186 (386)
T 2bnx_A          167 TSIALKVGCLQLINALITPA  186 (386)
T ss_dssp             SCHHHHHHHHHHHHHHHTTC
T ss_pred             ChHHHHHHHHHHHHHHHCCC
Confidence            55566665555555555553

>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20

Probab=89.74  E-value=7.7  Score=37.77  Aligned_cols=255  Identities=14%  Similarity=0.071  Sum_probs=122.9

Q ss_pred             CHHHHHHHHHHHHHHhcC---ChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHH
Q 009568          131 YPQLQFEAAWALTNIASG---TSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPL  207 (532)
Q Consensus       131 ~~~~~~~a~~~L~~l~~~---~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L  207 (532)
                      ||.++. +...|..+...   ++......++...+..|+.++.++++.=|+..-.+|..+-+.-...|..+... +-..+
T Consensus       131 WpHLql-VYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif  208 (449)
T 2npp_B          131 WPHLQL-VYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIF  208 (449)
T ss_dssp             HHHHHH-HHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHH-HHHHH
T ss_pred             chHHHH-HHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence            454443 33444444331   23334455566778899999999999999999999988865544445443321 23344


Q ss_pred             HHHhhhhhhhHHHHHHHHHhhhccCCCCCCCc-ccccchHHHHHHhhcCCCHHH-HHHHHHHHHHhccCChhHHHHHHHh
Q 009568          208 LAQLNERAKLSMLRNATWTLSNFCRGKPQPPF-DQVRPALPALAQLVHSNDEEV-LTDACWALSYLSDGTNDKIQAVIEA  285 (532)
Q Consensus       208 ~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~-~~~~~~l~~L~~lL~~~d~~v-~~~a~~~L~~l~~~~~~~~~~~~~~  285 (532)
                      .+.+.......-...++.+++.+..+-..+-. ....-...+|+++.....-.. -.....|+......++.....    
T Consensus       209 ~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~----  284 (449)
T 2npp_B          209 YRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP----  284 (449)
T ss_dssp             HHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHH----
T ss_pred             HHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHH----
Confidence            44442222222334455566666655422222 222223344555555443221 122233333333333332221    


Q ss_pred             CchHHHHHhhCCCCccchhhHHHHHHHhhcCCc-chhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHH
Q 009568          286 GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD-FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI  364 (532)
Q Consensus       286 ~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~  364 (532)
                       ++..|+.+=-..+..-...-+.-|..+....+ .....+ ...+...+...+.++ +..|-..|+....|=     . +
T Consensus       285 -vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i-~~~lF~~la~ci~S~-hfqVAErAL~~w~N~-----~-i  355 (449)
T 2npp_B          285 -VVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKI-MEPLFRQLAKCVSSP-HFQVAERALYYWNNE-----Y-I  355 (449)
T ss_dssp             -HHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHH-HHHHHHHHHHHHTCS-CHHHHHHHHGGGGCH-----H-H
T ss_pred             -HHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHHHHcCC-CHHHHHHHHHHHCCH-----H-H
Confidence             12222222111222222223344445554333 222222 224667777888887 778887776554321     1 1


Q ss_pred             HHHHH---cCCHHHHHHHHhc----C-chhHHHHHHHHHHHhhc
Q 009568          365 QAVID---AGLVGPLVNLLQN----A-EFDIKKEAAWAISNATS  400 (532)
Q Consensus       365 ~~l~~---~~~i~~L~~ll~~----~-~~~v~~~a~~aL~nl~~  400 (532)
                      ..++.   ..++|.++..+..    . +..++..|..++.-+..
T Consensus       356 ~~li~~n~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e  399 (449)
T 2npp_B          356 MSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFME  399 (449)
T ss_dssp             HHHHHTTHHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHT
T ss_pred             HHHHHhchhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            12221   1145655555422    2 55677777777765544

>2p8q_B Snurportin-1; heat repeat, IBB-domain, importin, karyopherin, transport; 2.35A {Homo sapiens} PDB: 2q5d_C 3lww_B

Probab=88.68  E-value=0.32  Score=28.98  Aligned_cols=38  Identities=32%  Similarity=0.535  Sum_probs=26.3

Q ss_pred             HHhhhcCCC-CCchHHhhhhhHHHHHHHHHhhHHHHHhhhh
Q 009568           11 VRRNRYKVA-VDADEGRRRREDNMVEIRKNKREESLLKKRR   50 (532)
Q Consensus        11 ~~~~~~k~~-~~~~~~~~~r~~~~~~~Rk~~r~~~~~~~r~   50 (532)
                      +|...||+. ...++..++| + ..+..|++|-+.++..|+
T Consensus         2 PR~sqYK~k~~~~~q~~rRr-~-~L~~QK~~R~D~~nhaR~   40 (40)
T 2p8q_B            2 PRLSQYKSKYSSLEQSERRR-R-LLELQKSKRLDYVNHARR   40 (40)
T ss_dssp             CCGGGTTCCCCSCSTTHHHH-H-HHHHHHHHHHHHHHTTTC
T ss_pred             ccHHhhccccchhhHHHHHH-H-HHHHHHHHHHHHHHHhcC
Confidence            478899994 4444444444 4 578888899888877663

>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A

Probab=86.61  E-value=1.5  Score=34.98  Aligned_cols=73  Identities=12%  Similarity=0.193  Sum_probs=52.9

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHh---cCCC--------H
Q 009568          415 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQ---SHDN--------N  483 (532)
Q Consensus       415 ~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~---~~~~--------~  483 (532)
                      +++.|..-|..+.+.++..+|.+|..++..|..            .|...+.+.-  ..|..+.   .-++        .
T Consensus        50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~------------~f~~~~r~~~--~~Ik~l~~F~g~~dp~~G~d~g~  115 (140)
T 1vdy_A           50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGS------------EFRREMQRNS--VAVRNLFHYKGHPDPLKGDALNK  115 (140)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCH------------HHHHHHHHTT--HHHHTTTTCCCCCCTTTSSCHHH
T ss_pred             HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCH------------HHHHHHHHhH--HHHHHHHhcCCCCCcccccchhH
Confidence            577888888888999999999999999876543            3555554442  3455553   3333        6


Q ss_pred             HHHHHHHHHHHHhCCCCc
Q 009568          484 EIYEKAVKILETYWLEED  501 (532)
Q Consensus       484 ~v~~~a~~il~~~~~~~~  501 (532)
                      .|+.+|.++++-+|+++.
T Consensus       116 ~VR~~AkEl~~ll~d~~~  133 (140)
T 1vdy_A          116 AVRETAHETISAIFSEEN  133 (140)
T ss_dssp             HHHHHHHHHHHHHTCCSS
T ss_pred             HHHHHHHHHHHHHhCcCC
Confidence            799999999999998654

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=84.36  E-value=7.8  Score=36.92  Aligned_cols=120  Identities=16%  Similarity=0.133  Sum_probs=81.5

Q ss_pred             cCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhh
Q 009568          370 AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEK  449 (532)
Q Consensus       370 ~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~  449 (532)
                      .++++.++.+-.+.+.++|+.++..|...+.. ..+...     .+++.|..+|.+.|+.+++.++.+..+++...=..-
T Consensus        62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~-~~el~~-----~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i  135 (386)
T 3o2t_A           62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKR-DIELLL-----KLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWM  135 (386)
T ss_dssp             GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-HHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            35888899888888999999999999887753 223322     267788888999999999999988888875433221


Q ss_pred             hccCCC-ccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009568          450 NMGTAT-ADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW  497 (532)
Q Consensus       450 ~~~~~~-~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~  497 (532)
                      -...+. ...+.....+.+.  -+.|-.+..+.|..|+-.|.+.+++..
T Consensus       136 ~~~~~~~~~~e~~W~~m~~l--K~~Il~~~ds~n~GVrl~aiKFle~VI  182 (386)
T 3o2t_A          136 VKSRVISELQEACWDMVSAM--AGDIILLLDSDNDGIRTHAIKFVEGLI  182 (386)
T ss_dssp             HHC-CCCHHHHHHHHHHHHH--HHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred             hcCCCcchhHHHHHHHHHHH--HHHHHHHhccCCcchHHHHHHHHHHHH
Confidence            110000 0012334444322  456666778899999999999988854

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=83.67  E-value=3.1  Score=33.76  Aligned_cols=73  Identities=10%  Similarity=-0.075  Sum_probs=57.7

Q ss_pred             HHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCC------CCHHHHHHHHHHHHHHHHhh
Q 009568          373 VGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC------PDPRIVTVCLEGLENILKVG  445 (532)
Q Consensus       373 i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~------~d~~v~~~al~~L~~l~~~~  445 (532)
                      +..|..-+.+.++.++..|+..|-.+..++...+-..+.....+..|+.++..      .++.|+..++..+...-...
T Consensus        50 ~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f  128 (149)
T 3g2s_A           50 TRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL  128 (149)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence            45667778888999999999999999988887776666666778888888863      57789999888887776543

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=83.19  E-value=3.1  Score=34.34  Aligned_cols=71  Identities=11%  Similarity=0.137  Sum_probs=52.4

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcC-CCHHHHHHHHHHH
Q 009568          415 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSH-DNNEIYEKAVKIL  493 (532)
Q Consensus       415 ~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~-~~~~v~~~a~~il  493 (532)
                      ++..|..-|.+.++.++..+|..|..+++.+...            |...+.....++.+..+... .++.|++++..+|
T Consensus        53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~------------Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li  120 (163)
T 1x5b_A           53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKI------------FHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLM  120 (163)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHH------------HHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH------------HHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence            4666777788899999999999999998875432            44445555556666666543 7789999999999


Q ss_pred             HHhC
Q 009568          494 ETYW  497 (532)
Q Consensus       494 ~~~~  497 (532)
                      ..+-
T Consensus       121 ~~W~  124 (163)
T 1x5b_A          121 VEWS  124 (163)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8864

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=82.73  E-value=3  Score=33.47  Aligned_cols=72  Identities=4%  Similarity=0.001  Sum_probs=53.8

Q ss_pred             HHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 009568          373 VGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV  444 (532)
Q Consensus       373 i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~  444 (532)
                      +..|..-+.++++.++..|+..|-.++.++....-..+.....+..|..+++..++.|+..++..+...-..
T Consensus        44 ~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~  115 (140)
T 3ldz_A           44 LRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDE  115 (140)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence            455666778888899999988888888877766655555555667777777777889999988888766543

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=81.06  E-value=3  Score=33.44  Aligned_cols=71  Identities=13%  Similarity=0.193  Sum_probs=52.0

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHH
Q 009568          415 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILE  494 (532)
Q Consensus       415 ~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~  494 (532)
                      ++..|..-|.+.++.+...+|..|..+++.+...            |...+.....++.+..+....++.|+.++..++.
T Consensus        43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~------------f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~  110 (140)
T 3ldz_A           43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKI------------FHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMV  110 (140)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH------------HHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHH------------HHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence            4667777788889999999999998888765432            3444444445555666666678999999999998


Q ss_pred             HhC
Q 009568          495 TYW  497 (532)
Q Consensus       495 ~~~  497 (532)
                      .+-
T Consensus       111 ~W~  113 (140)
T 3ldz_A          111 EWT  113 (140)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=80.86  E-value=6.2  Score=31.95  Aligned_cols=71  Identities=8%  Similarity=-0.071  Sum_probs=56.4

Q ss_pred             HHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCC------CCHHHHHHHHHHHHHHHH
Q 009568          373 VGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC------PDPRIVTVCLEGLENILK  443 (532)
Q Consensus       373 i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~------~d~~v~~~al~~L~~l~~  443 (532)
                      +..|..-+.++++.++..|+..|-.+..++...+-..+.....+..|+.++..      .++.|+..++..+...-.
T Consensus        40 ~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (148)
T 1mhq_A           40 PWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV  116 (148)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            45667778889999999999999999998877776776777788888888864      467888888887766543

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=80.78  E-value=13  Score=33.81  Aligned_cols=150  Identities=11%  Similarity=0.096  Sum_probs=92.1

Q ss_pred             chHHHHHHhhcCC------CHHHHHHHHHHHHHhccCChhHHHHHH-HhCchHHHHHhhCCCCccchhhHHHHHHHhhcC
Q 009568          244 PALPALAQLVHSN------DEEVLTDACWALSYLSDGTNDKIQAVI-EAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG  316 (532)
Q Consensus       244 ~~l~~L~~lL~~~------d~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~  316 (532)
                      .-+..+..++.++      |......++..|..++..-.--.+.+- +..++..|+ +.....+.++..|.++|+.....
T Consensus        22 ~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRN  100 (315)
T 3qml_C           22 SDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRN  100 (315)
T ss_dssp             HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHcc
Confidence            3344455555554      445677788888777754332223232 334444444 33445567899999999999999


Q ss_pred             CcchhHHHhhc--CchHHHHHHhcC----C--CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC--chh
Q 009568          317 DDFQTQCIITY--GALPYLLGLLTH----S--HKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA--EFD  386 (532)
Q Consensus       317 ~~~~~~~~~~~--~~l~~L~~lL~~----~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~  386 (532)
                      +|.....+.+.  .++..+..-|..    .  ....+.+.-+.+|.-|...+..    + ....+..|..++...  ++.
T Consensus       101 NP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~----F-~~~~m~~L~~ly~~~~~d~~  175 (315)
T 3qml_C          101 NPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED----L-PIYSTVVLQNVYERNNKDKQ  175 (315)
T ss_dssp             CHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT----C---CCHHHHHHHHHHTTTCHH
T ss_pred             CHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh----h-hhccHHHHHHHHccCCCCHH
Confidence            99877766653  333333332321    1  1346677777788777765421    1 133567777777777  889


Q ss_pred             HHHHHHHHHHHhh
Q 009568          387 IKKEAAWAISNAT  399 (532)
Q Consensus       387 v~~~a~~aL~nl~  399 (532)
                      ++..++..+..+.
T Consensus       176 ~k~Kvl~li~d~f  188 (315)
T 3qml_C          176 LQIKVLELISKIL  188 (315)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc
Confidence            9999998888776

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=80.73  E-value=31  Score=30.78  Aligned_cols=141  Identities=13%  Similarity=0.141  Sum_probs=88.9

Q ss_pred             hHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhh
Q 009568          344 SIKKEACWTISNITA-GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDL  422 (532)
Q Consensus       344 ~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~l  422 (532)
                      ..+-....-+..++. .++...     .++++.++.+..+.+.++|+..+..+...+.. .++...     .+++.|..+
T Consensus        30 ~~kl~~L~qa~el~~~~dp~ll-----~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~-k~~l~~-----~~l~~L~~L   98 (257)
T 3gs3_A           30 STKCELLAKVQETVLGSCAELA-----EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV-KVELLP-----HVINVVSML   98 (257)
T ss_dssp             HHHHHHHHHHHHHHTTTTGGGH-----HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGHH-----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHhHH-----HHHHHHHHHhccCChHHHHHHHHHHHHHHHHH-HHHHHH-----HHHHHHHHH
Confidence            455555555666544 333322     22566777766667889999999888877743 222222     267888888


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCC-ccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009568          423 FVCPDPRIVTVCLEGLENILKVGEAEKNMGTAT-ADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW  497 (532)
Q Consensus       423 L~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~  497 (532)
                      ++++|+.+++.++.+..+++...=..--...+. ...+.....+.+  .-+.+-.+..+.|..|+-.|.+.+++..
T Consensus        99 l~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~--lK~~Il~~~~s~n~gvkl~~iKF~e~vI  172 (257)
T 3gs3_A           99 LRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSL--IKAQILDMIDNENDGIRTNAIKFLEGVV  172 (257)
T ss_dssp             TTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHH--HHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH--HHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence            999999999999998888876543322111000 001223333332  2466677778899999999999988854

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=80.34  E-value=5.3  Score=33.24  Aligned_cols=71  Identities=15%  Similarity=0.186  Sum_probs=54.2

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhc------CCCHHHHHH
Q 009568          415 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQS------HDNNEIYEK  488 (532)
Q Consensus       415 ~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~------~~~~~v~~~  488 (532)
                      ++..|..-|.+.++.++..+|..|..+++.+...            |...+.....++.|..+..      ..++.|+++
T Consensus        51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~------------Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~k  118 (171)
T 1juq_A           51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRR------------FHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTK  118 (171)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH------------HHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH------------HHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHH
Confidence            4667777788899999999999999999875432            4555666666777777754      356899999


Q ss_pred             HHHHHHHhC
Q 009568          489 AVKILETYW  497 (532)
Q Consensus       489 a~~il~~~~  497 (532)
                      +..+|..+-
T Consensus       119 il~li~~W~  127 (171)
T 1juq_A          119 VIELLYSWT  127 (171)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	532
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	1e-141
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	1e-100
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	7e-47
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	5e-17
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-15
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	9e-24
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-22
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	7e-22
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-17
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	9e-17
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	8e-12
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	3e-21
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	3e-12
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	3e-12
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	6e-09
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	1e-11
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	3e-11
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	2e-09
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	1e-05
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	0.004
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	3e-07
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	3e-06
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	1e-05
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	2e-04
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	4e-05
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.001
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.002
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	5e-05
d2bpta1	861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	4e-04
d2bpta1	861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	0.002
d1lrva_	233	a.118.1.5 (A:) Leucine-rich repeat variant {Azotob	0.003
d1te4a_	111	a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium	0.003

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  416 bits (1068), Expect = e-141
 Identities = 276/504 (54%), Positives = 348/504 (69%), Gaps = 15/504 (2%)

Query: 10  EVRRNRYKVA--VDADEGRRRREDNMVEIRKNKREESLLKKRR-----EGLQSQQFPPPA 62
           E RR  +K      ADE RRRR+   VE+RK KR+E+L K+R      +G  S +    +
Sbjct: 4   EYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESS 63

Query: 63  PASNLNLQTKL-ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPR 121
            +++    ++L + LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR
Sbjct: 64  VSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPR 123

Query: 122 FVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAV 181
            VEF+       LQ EAAWALTNIASGTS  TKVV+D  AVP+F++LL + S +V+EQA+
Sbjct: 124 LVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAI 183

Query: 182 WALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPFD 240
           WALGNVAGDS   RD VL   A+ P+L  L    K S++R ATWTLSN CRGK PQP + 
Sbjct: 184 WALGNVAGDSTDYRDYVLQCNAMEPIL-GLFNSNKPSLIRTATWTLSNLCRGKKPQPDWS 242

Query: 241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP 300
            V  ALP LA+L++S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S 
Sbjct: 243 VVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHEST 302

Query: 301 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360
            V  PALR VGNIVTG+D QTQ +I  G LP L  LL+   K++IKKEACWTISNITAGN
Sbjct: 303 LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSS-PKENIKKEACWTISNITAGN 361

Query: 361 RDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTH--EQIKYLVREGCIKP 418
            +QIQAVIDA L+ PLV LL+ AE+  KKEA WAISNA+SGG    + I+YLV +GCIKP
Sbjct: 362 TEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKP 421

Query: 419 LCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQ 478
           LCDL    D RI+ V L+ LENILK+GEA+K       ++N+ A  +E+A G+EKI N Q
Sbjct: 422 LCDLLEIADNRIIEVTLDALENILKMGEADKE--ARGLNINENADFIEKAGGMEKIFNCQ 479

Query: 479 SHDNNEIYEKAVKILETYWLEEDD 502
            ++N++IYEKA KI+ETY+ EE+D
Sbjct: 480 QNENDKIYEKAYKIIETYFGEEED 503

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  306 bits (784), Expect = e-100
 Identities = 217/435 (49%), Positives = 289/435 (66%), Gaps = 13/435 (2%)

Query: 68  NLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLM 127
           N  T   S+  +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL 
Sbjct: 7   NQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG 66

Query: 128 REDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNV 187
           + D   +QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+
Sbjct: 67  KTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNI 126

Query: 188 AGDSPRCRDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGKPQ-PPFDQV 242
           AGD    RDLV+  GA+ PLLA L            LRN TWTLSN CR K   PP D V
Sbjct: 127 AGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAV 186

Query: 243 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSV 302
              LP L +L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG     +
Sbjct: 187 EQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPI 246

Query: 303 LIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD 362
           + PALR +GNIVTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +D
Sbjct: 247 VTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN-PKTNIQKEATWTMSNITAGRQD 305

Query: 363 QIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDL 422
           QIQ V++ GLV  LV +L  A+F  +KEAAWAI+N TSGGT EQI YLV  G I+PL +L
Sbjct: 306 QIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNL 365

Query: 423 FVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDN 482
               D +I+ V L+ + NI +  E          +  + + ++EE  GL+KIE LQ H+N
Sbjct: 366 LSAKDTKIIQVILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHEN 418

Query: 483 NEIYEKAVKILETYW 497
             +Y+ ++ ++E Y+
Sbjct: 419 ESVYKASLNLIEKYF 433

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  167 bits (423), Expect = 7e-47
 Identities = 62/451 (13%), Positives = 125/451 (27%), Gaps = 70/451 (15%)

Query: 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVRE 178
           +P+ V++L  +D  + Q   A+ + +         + V   G +   V LL SP+ +V++
Sbjct: 4   IPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 179 QAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP 238
            A  AL N+   S   +     Q  +   ++ L       + +  T  L N         
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 239 FDQVRPALPALAQLV---------------HSNDEEVLTDACWALSYLSDGTNDKIQAVI 283
                       +++                  D EV  +A   L  LS     +     
Sbjct: 123 ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182

Query: 284 EAGVCPRLVELLGHPSPSVLIP--------------ALRTVGNIVTGDDFQTQCIITYGA 329
            +G+   L+  + +   +                  + R    + T              
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242

Query: 330 LPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKK 389
                G  ++   K +              N      +  +  +   +NL+  ++ D   
Sbjct: 243 EKSSTGCFSNKSDK-MMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATL 301

Query: 390 EAAWAISNATSGGTHEQIKY-----LVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV 444
           EA        +               ++E  +  +  L    +  +V      L N+ + 
Sbjct: 302 EACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361

Query: 445 GEAEKNMGTA---------------------------------TADVNQYAQLVEEAEGL 471
               + MG                                    A   Q A+    +  L
Sbjct: 362 PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSML 421

Query: 472 EKIENL-QSHDNNEIYEKAVKILETYWLEED 501
             I NL +S  + +  E A  +L   W  ++
Sbjct: 422 NNIINLCRSSASPKAAEAARLLLSDMWSSKE 452

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.4 bits (199), Expect = 5e-17
 Identities = 43/308 (13%), Positives = 92/308 (29%), Gaps = 28/308 (9%)

Query: 116 SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDD 175
           SG              P++ F A   L N++S  +    +    G +   +  + +    
Sbjct: 141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA 200

Query: 176 VR------EQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQ--------LNERAKLSMLR 221
            R      E  +  L N++            Q       A          + ++   M  
Sbjct: 201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNN 260

Query: 222 NATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSND-EEVLTDACWALSYLSDGTNDKIQ 280
           N    L           +     A+     L+  +  +  L     AL  L+        
Sbjct: 261 NYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320

Query: 281 A-----VIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLG 335
                  ++    P++  LL   +  V+      + N+          ++     P +  
Sbjct: 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTR 378

Query: 336 LLTHSHKKS-----IKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFD-IKK 389
           LLT     +     I   AC+T+ N+ A      +    + ++  ++NL +++      +
Sbjct: 379 LLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAE 438

Query: 390 EAAWAISN 397
            A   +S+
Sbjct: 439 AARLLLSD 446

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.8 bits (187), Expect = 1e-15
 Identities = 30/302 (9%), Positives = 72/302 (23%), Gaps = 16/302 (5%)

Query: 202 GALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRP-ALPALAQLVHSNDEEV 260
           G  IP   Q              + + + C           +   +  L  L+ S ++ V
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNV 60

Query: 261 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ 320
              A  AL  L   +                V LL     + +   L  +   ++  D  
Sbjct: 61  QQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120

Query: 321 TQCIITYGALPYLLGLL--------------THSHKKSIKKEACWTISNITAGNRDQIQA 366
            + +I          ++                     +   A   + N+++ +  +   
Sbjct: 121 KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTM 180

Query: 367 VIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCP 426
              +GL+  L+  +QN     + +     +                    + L       
Sbjct: 181 RNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240

Query: 427 DPRIVTV-CLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEI 485
                +  C     + +     +  +     +      L         +  +     +  
Sbjct: 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDAT 300

Query: 486 YE 487
            E
Sbjct: 301 LE 302

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (253), Expect = 9e-24
 Identities = 70/486 (14%), Positives = 129/486 (26%), Gaps = 87/486 (17%)

Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ 135
           + A+V  + + +       T      LS      +  + +SG +P  V+ L       + 
Sbjct: 61  VSAIVRTMQNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPV-DSVL 118

Query: 136 FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR 195
           F A   L N+          V   G +   V LL   +          L  +A  +   +
Sbjct: 119 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 178

Query: 196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHS 255
            ++L+ G    L+  +       +L   +  L          P       + AL   +  
Sbjct: 179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD 238

Query: 256 NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT 315
             + ++ +  W L  LSD    +       G+   LV+LLG    +V+  A   + N+  
Sbjct: 239 PSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 295

Query: 316 GDDFQTQCIITY-----------------------------------------------G 328
            +      +                                                   
Sbjct: 296 NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHY 355

Query: 329 ALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIK 388
            LP ++ LL       + K     I N+     +    + + G +  LV LL  A  D +
Sbjct: 356 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQ 414

Query: 389 KEAAWAISNATSGGT--------------------HEQIKYLVREGCIKPLCDLFVCPDP 428
           +  +   +                                 +     I     L   P  
Sbjct: 415 RRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIE 474

Query: 429 RIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEK 488
            I  V    L  +              A   + A+ +E       +  L    N  +   
Sbjct: 475 NIQRVAAGVLCEL--------------AQDKEAAEAIEAEGATAPLTELLHSRNEGVATY 520

Query: 489 AVKILE 494
           A  +L 
Sbjct: 521 AAAVLF 526

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.0 bits (242), Expect = 3e-22
 Identities = 53/306 (17%), Positives = 100/306 (32%), Gaps = 5/306 (1%)

Query: 160 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSM 219
            A+P   KLL      V  +A   +  ++        ++ S   +  ++  +     +  
Sbjct: 17  RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVET 76

Query: 220 LRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKI 279
            R    TL N    +           +PAL +++ S  + VL  A   L  L        
Sbjct: 77  ARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136

Query: 280 QAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH 339
            AV  AG   ++V LL   +   L      +  +  G+      I+  G    L+ ++  
Sbjct: 137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 196

Query: 340 SHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNAT 399
              + +       +  + +       A+++AG +  L   L +    + +   W + N  
Sbjct: 197 YTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL- 254

Query: 400 SGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVN 459
              +    K    EG +  L  L    D  +VT     L N+       K M      + 
Sbjct: 255 ---SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 311

Query: 460 QYAQLV 465
              + V
Sbjct: 312 ALVRTV 317

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.5 bits (238), Expect = 7e-22
 Identities = 71/485 (14%), Positives = 139/485 (28%), Gaps = 64/485 (13%)

Query: 73  LESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQS-GVVPRFVEFLMREDY 131
             ++P +   +  +D  +  +A     +L   E       +++S  +V   V  +   + 
Sbjct: 16  TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE--ASRHAIMRSPQMVSAIVRTMQNTND 73

Query: 132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS 191
            +     A  L N++    E    +   G +P  VK+L SP D V   A+  L N+    
Sbjct: 74  VETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ 132

Query: 192 PRCRDLVLSQGALIPLLAQ----------------------------------------- 210
              +  V   G L  ++A                                          
Sbjct: 133 EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVN 192

Query: 211 -LNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALS 269
            +       +L   +  L          P       + AL   +    + ++ +  W L 
Sbjct: 193 IMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 252

Query: 270 YLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGA 329
            LSD    +       G+   LV+LLG    +V+  A   + N+   +      +   G 
Sbjct: 253 NLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGG 309

Query: 330 LPYLLGLLTHSHKKSIKKE----ACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEF 385
           +  L+  +  +  +    E    A   +++          AV     +  +V LL     
Sbjct: 310 IEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSH 369

Query: 386 DIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDP---------RIVTVCLE 436
               +A   +    +            +G I  L  L V                   +E
Sbjct: 370 WPLIKATVGLIRNLALCPANHAPL-REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE 428

Query: 437 GLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETY 496
           G+     V      +     DV+    ++     +     L       I   A  +L   
Sbjct: 429 GVRMEEIVEGCTGALHILARDVHN-RIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL 487

Query: 497 WLEED 501
             +++
Sbjct: 488 AQDKE 492

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.2 bits (201), Expect = 3e-17
 Identities = 24/209 (11%), Positives = 72/209 (34%), Gaps = 2/209 (0%)

Query: 275 TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLL 334
            N +  A +     P L +LL      V+  A   V  +   +  +   + +   +  ++
Sbjct: 6   INYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIV 65

Query: 335 GLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWA 394
             + +++     +    T+ N++  +R+ + A+  +G +  LV +L +    +   A   
Sbjct: 66  RTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITT 124

Query: 395 ISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTA 454
           + N            +   G ++ +  L    + + + +  + L+ +    +  K +  A
Sbjct: 125 LHNLLL-HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA 183

Query: 455 TADVNQYAQLVEEAEGLEKIENLQSHDNN 483
           +        ++      + +         
Sbjct: 184 SGGPQALVNIMRTYTYEKLLWTTSRVLKV 212

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.7 bits (197), Expect = 9e-17
 Identities = 63/364 (17%), Positives = 113/364 (31%), Gaps = 29/364 (7%)

Query: 102 LSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGA 161
           L+         ++ SG     V  +    Y +L       +  + S  S N   +++ G 
Sbjct: 170 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLL-WTTSRVLKVLSVCSSNKPAIVEAGG 228

Query: 162 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLR 221
           +      L  PS  + +  +W L N++  + +   +    G L+ LL   +         
Sbjct: 229 MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAG 288

Query: 222 NATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDE--EVLTDACWALSYLSDGTNDKI 279
             +    N  + K          AL          ++  E    A   L+          
Sbjct: 289 ILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQ 348

Query: 280 QAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH 339
            AV      P +V+LL  PS   LI A   +   +         +   GA+P L+ LL  
Sbjct: 349 NAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVR 408

Query: 340 SHKK---------------------SIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVN 378
           +H+                       I +     +  + A +      +     +   V 
Sbjct: 409 AHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHIL-ARDVHNRIVIRGLNTIPLFVQ 467

Query: 379 LLQNAEFDIKKEAAWAISN-ATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEG 437
           LL +   +I++ AA  +   A      E I     EG   PL +L    +  + T     
Sbjct: 468 LLYSPIENIQRVAAGVLCELAQDKEAAEAI---EAEGATAPLTELLHSRNEGVATYAAAV 524

Query: 438 LENI 441
           L  +
Sbjct: 525 LFRM 528

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.3 bits (157), Expect = 8e-12
 Identities = 30/172 (17%), Positives = 58/172 (33%), Gaps = 44/172 (25%)

Query: 101 LLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG 160
           L+ +      +   ++ +     +F+      ++      AL  +A     N  V+    
Sbjct: 402 LVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD-VHNRIVIRGLN 460

Query: 161 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSML 220
            +P+FV+LL SP ++++  A   L  +A D     + + ++G                  
Sbjct: 461 TIPLFVQLLYSPIENIQRVAAGVLCELAQD-KEAAEAIEAEG------------------ 501

Query: 221 RNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS 272
                                   A   L +L+HS +E V T A   L  +S
Sbjct: 502 ------------------------ATAPLTELLHSRNEGVATYAAAVLFRMS 529

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.3 bits (225), Expect = 3e-21
 Identities = 42/260 (16%), Positives = 90/260 (34%), Gaps = 9/260 (3%)

Query: 104 IERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVP 163
           +E+      V+   + P   E     D  Q +  A   L ++     +N         + 
Sbjct: 4   VEQMKSCLRVLSQPMPPTAGEAEQAAD-QQEREGALELLADLCE-NMDNAADFCQLSGMH 61

Query: 164 IFV-KLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRN 222
           + V + L + +  +R +A   +G  + +    ++ VL  GAL  LL  L+  A  ++   
Sbjct: 62  LLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVK 121

Query: 223 ATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQA 281
           A + +S   R +               L + +    +++   + + L  L  G  +    
Sbjct: 122 ALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGT 181

Query: 282 VIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGD-----DFQTQCIITYGALPYLLGL 336
           +   G+  +LV L+           L  + ++VT       + +   +     L +   L
Sbjct: 182 LCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQL 241

Query: 337 LTHSHKKSIKKEACWTISNI 356
           L    +   + E C  +   
Sbjct: 242 LQQHEEYQEELEFCEKLLQT 261

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (160), Expect = 3e-12
 Identities = 48/313 (15%), Positives = 99/313 (31%), Gaps = 34/313 (10%)

Query: 76  LPAMVAGVWSDDSS--LQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ 133
           L A++ G+  ++ S  ++L AT      L   ++   +E  +  ++    E     D  +
Sbjct: 173 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TR 231

Query: 134 LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR 193
           ++  A   L  I S   +  +  +      I ++ + S  D+V  Q +    NV  +   
Sbjct: 232 VRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMD 291

Query: 194 CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLV 253
                             ++      L+     L+                         
Sbjct: 292 LAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQ-----------------------T 328

Query: 254 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVC----PRLVELLGHPSPSVLIPALRT 309
            +  +E   D  W     +      +    E  +     P + E + +P       A+  
Sbjct: 329 LTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMA 388

Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID 369
            G I+ G +      +   A+P L+ L+       ++  A WT+  I        +A I+
Sbjct: 389 FGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVV-VRDTAAWTVGRIC---ELLPEAAIN 444

Query: 370 AGLVGPLVNLLQN 382
              + PL+  L  
Sbjct: 445 DVYLAPLLQCLIE 457

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.0 bits (154), Expect = 3e-11
 Identities = 51/388 (13%), Positives = 127/388 (32%), Gaps = 26/388 (6%)

Query: 132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS 191
              +F A   L       S       +   V + +KLL   + +V+  AV  LG +    
Sbjct: 17  KDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLV--- 73

Query: 192 PRCRDLVLSQ--GALIPLLAQLNERAK---LSMLRNATWTLSNFCRGKPQPPFDQVRPAL 246
            + ++  +      L   +    E+ +      L+     L     G         +   
Sbjct: 74  SKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITG 133

Query: 247 PALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPA 306
              + +    D  V  +A   ++ +       +     + +   L+  L  P  +V    
Sbjct: 134 RLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPS-ILTCLLPQLTSPRLAVRKRT 192

Query: 307 LRTVGNIVT--GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI 364
           +  +G++V   G+            + +LL  L+ +   S  +     I+ I+     +I
Sbjct: 193 IIALGHLVMSCGNIVFVD------LIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRI 246

Query: 365 QAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV 424
              ++  ++  +V      + ++++    A  +       E   ++     I  +C  ++
Sbjct: 247 GEYLEK-IIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVST---IINICLKYL 302

Query: 425 CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEE-----AEGLEKIENLQS 479
             DP       +  EN +     + +   +  + +    +  +     A+ L+ + + + 
Sbjct: 303 TYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRH 362

Query: 480 HDNNEIYEKAVKILETYWLEEDDETIAA 507
               E Y+     L + + E ++   A 
Sbjct: 363 EMLPEFYKTVSPALISRFKEREENVKAD 390

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (138), Expect = 2e-09
 Identities = 37/302 (12%), Positives = 96/302 (31%), Gaps = 25/302 (8%)

Query: 56   QQFPPPAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQ 115
              F      +  N    ++ L  +   V+S  ++L  + +           +    +   
Sbjct: 753  LDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGP 812

Query: 116  SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDD 175
            + V     +         ++  A  +L  +      + ++ +      + ++  +SPS++
Sbjct: 813  AVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLEL----KSVILEAFSSPSEE 868

Query: 176  VREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSM-LRNATWTLSNFCRGK 234
            V+  A +ALG+++  +            L  +L ++  + K    L ++   + +     
Sbjct: 869  VKSAASYALGSISVGNL--------PEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVV 920

Query: 235  PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 294
               P+  V      L +     +E         L         K+  +    + PRL   
Sbjct: 921  GLKPY--VENIWALLLKHCECAEEGTRNVVAECLG--------KLTLIDPETLLPRLKGY 970

Query: 295  LGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTIS 354
            L   S       +  V   ++        ++    +   L  L      ++++ A  T +
Sbjct: 971  LISGSSYARSSVVTAVKFTISDHPQPIDPLLK-NCIGDFLKTLEDPD-LNVRRVALVTFN 1028

Query: 355  NI 356
            + 
Sbjct: 1029 SA 1030

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 1e-05
 Identities = 33/178 (18%), Positives = 52/178 (29%), Gaps = 15/178 (8%)

Query: 85   SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTN 144
                 L L +  +     S+    P  E I + ++               +   A  L  
Sbjct: 900  PKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLK-----HCECAEEGTRNVVAECLGK 954

Query: 145  IASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGAL 204
            +     E          +P     L S S   R   V A+     D P+  D +L     
Sbjct: 955  LTLIDPET--------LLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKN--C 1004

Query: 205  IPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLT 262
            I    +  E   L++ R A  T ++    KP    D +   LP L        E +  
Sbjct: 1005 IGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIRE 1062

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 0.004
 Identities = 31/257 (12%), Positives = 84/257 (32%), Gaps = 29/257 (11%)

Query: 245 ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLI 304
            +  L + + S+D++    A   L       + K+    E  V   +++LL   +  V  
Sbjct: 4   HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQN 63

Query: 305 PALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG----- 359
            A++ +G +V+         I    +  L   +    K+ ++  +   +  +        
Sbjct: 64  LAVKCLGPLVSKVKEYQVETI----VDTLCTNMLSD-KEQLRDISSIGLKTVIGELPPAS 118

Query: 360 NRDQIQAVIDAGLVGPLVNLLQNAE-FDIKKEAAWAISNATSGGTHEQIKYLVREGCIKP 418
           +   + A +   + G L + +   E   ++ EA   +++  S      + +      +  
Sbjct: 119 SGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFH--PSILTC 176

Query: 419 LCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQ 478
           L      P   +    +  L +++            +     +  L+E       +  L 
Sbjct: 177 LLPQLTSPRLAVRKRTIIALGHLVM-----------SCGNIVFVDLIEHL-----LSELS 220

Query: 479 SHDNNEIYEKAVKILET 495
            +D+       ++ +  
Sbjct: 221 KNDSMSTTRTYIQCIAA 237

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (120), Expect = 3e-07
 Identities = 35/199 (17%), Positives = 63/199 (31%), Gaps = 10/199 (5%)

Query: 199 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR--GKPQPPFDQVRPALPALAQLVHSN 256
           L+Q  L        E      +  A   LS      G            L  + Q +   
Sbjct: 618 LAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDK 677

Query: 257 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV-- 314
             EV   +   L  L+      ++  I     P L   L     SV   A   +G I   
Sbjct: 678 MPEVRQSSFALLGDLTKACFQHVKPCIAD-FMPILGTNLNPEFISVCNNATWAIGEISIQ 736

Query: 315 TGDDFQTQCIITYGALPYLLGLLTHSH-KKSIKKEACWTISNITAGNRDQIQAVIDAGLV 373
            G + Q         L  L+ ++   +  K++ +    TI  +      ++  ++    +
Sbjct: 737 MGIEMQPYIP---MVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQ-FI 792

Query: 374 GPLVNLLQNAEFDIKKEAA 392
            P    L+N   + +K++A
Sbjct: 793 RPWCTSLRNIRDNEEKDSA 811

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (112), Expect = 3e-06
 Identities = 37/320 (11%), Positives = 91/320 (28%), Gaps = 22/320 (6%)

Query: 112 EVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGA--VPIFVKLL 169
            V +  ++P  +  L    +          +  + +      + +I +    +P  ++ L
Sbjct: 386 NVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCL 445

Query: 170 ASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSN 229
           +     VR    W L   A            +  +  LL ++ +  K  +   A    + 
Sbjct: 446 SDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK-RVQEAACSAFAT 504

Query: 230 FCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKI-QAVIEAGVC 288
                       +   L  L         + L     A+  L+D     + +      + 
Sbjct: 505 LEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLM 564

Query: 289 PRLVELLGHP--SPSVLIPALRTVGNIVT--GDDFQT-------------QCIITYGALP 331
           P L++           L P L  + ++ T     F               Q  +    L 
Sbjct: 565 PPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLN 624

Query: 332 YLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDA-GLVGPLVNLLQNAEFDIKKE 390
                   +  K     A   +S +  G    I+ ++    ++  +   +Q+   ++++ 
Sbjct: 625 NAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQS 684

Query: 391 AAWAISNATSGGTHEQIKYL 410
           +   + + T          +
Sbjct: 685 SFALLGDLTKACFQHVKPCI 704

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (107), Expect = 1e-05
 Identities = 50/312 (16%), Positives = 98/312 (31%), Gaps = 19/312 (6%)

Query: 85  SDDSSLQLEATTQFRKLLS---IERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWA 141
           S+D   +  +    +  +          + + I+S  +       + +  P ++      
Sbjct: 57  SEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLN-----NIGDSSPLIRATVGIL 111

Query: 142 LTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQ 201
           +T IAS              +P    LL S   +  E A  AL  +  DS    D  +  
Sbjct: 112 ITTIASKGELQNW----PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLD 167

Query: 202 G---ALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDE 258
                +IP   Q  + +   +  +A   ++ F   + Q     +      L  L    + 
Sbjct: 168 RPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEP 227

Query: 259 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 318
           EV  + C AL  L +   D++   +   +   +++       +V   AL      +T  +
Sbjct: 228 EVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENV---ALEACEFWLTLAE 283

Query: 319 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVN 378
                 +    LP L+ +L +  K S                    +  I          
Sbjct: 284 QPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTV 343

Query: 379 LLQNAEFDIKKE 390
             Q+ E  I++E
Sbjct: 344 AQQHDEDGIEEE 355

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 38/226 (16%), Positives = 78/226 (34%), Gaps = 35/226 (15%)

Query: 87  DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIA 146
           D    + A      L         + V +S ++    +  M++  P+++  +   L ++ 
Sbjct: 635 DKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQ-CMQDKMPEVRQSSFALLGDLT 693

Query: 147 SGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVA---GD--SPRCRDLVLSQ 201
               ++ K  I    +PI    L      V   A WA+G ++   G    P    ++   
Sbjct: 694 KACFQHVKPCIAD-FMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVL--- 749

Query: 202 GALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVL 261
             L+ ++         ++L N   T+       P     +V P L            + +
Sbjct: 750 HQLVEIIN--RPNTPKTLLENTAITIGRLGYVCP----QEVAPMLQ-----------QFI 792

Query: 262 TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPAL 307
              C +L  + D   +K  A    G+C  ++ +    +PS +I   
Sbjct: 793 RPWCTSLRNIRD-NEEKDSAF--RGIC-TMISV----NPSGVIQDF 830

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 4e-05
 Identities = 19/147 (12%), Positives = 47/147 (31%), Gaps = 9/147 (6%)

Query: 126 LMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALG 185
            + +    ++  A   L  +     +          +P  + +   P+   R   ++ + 
Sbjct: 449 WLVDHVYAIREAATSNLKKLVEKFGKEW---AHATIIPKVLAMSGDPNYLHRMTTLFCIN 505

Query: 186 NVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPA 245
            ++    +  D+      ++P + ++      ++  N   +L                  
Sbjct: 506 VLSEVCGQ--DITTKH--MLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSE--V 559

Query: 246 LPALAQLVHSNDEEVLTDACWALSYLS 272
            P L +L    D +V   A  AL+ LS
Sbjct: 560 KPILEKLTQDQDVDVKYFAQEALTVLS 586

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 18/135 (13%), Positives = 47/135 (34%), Gaps = 12/135 (8%)

Query: 77  PAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQF 136
              +A +     +++  AT+  +KL+           I    +P+ +      +Y     
Sbjct: 444 SLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATI----IPKVLAMSGDPNYLHRM- 498

Query: 137 EAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD 196
              + +  ++    ++   +     +P  +++   P  +VR     +L  +        D
Sbjct: 499 TTLFCINVLSEVCGQD---ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG----PILD 551

Query: 197 LVLSQGALIPLLAQL 211
               Q  + P+L +L
Sbjct: 552 NSTLQSEVKPILEKL 566

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 21/194 (10%), Positives = 56/194 (28%), Gaps = 12/194 (6%)

Query: 120 PRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQ 179
              +  L  +   +++      +  +A           D     + +  L      +RE 
Sbjct: 404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF---FDEKLNSLCMAWLVDHVYAIREA 460

Query: 180 AVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF 239
           A   L  +     +      +   +IP +  ++            + ++       Q   
Sbjct: 461 ATSNLKKLVEKFGKE----WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDIT 516

Query: 240 DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS 299
            +    LP + ++       V  +   +L  +    ++     +++ V P L +L     
Sbjct: 517 TKH--MLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS---TLQSEVKPILEKLTQDQD 571

Query: 300 PSVLIPALRTVGNI 313
             V   A   +  +
Sbjct: 572 VDVKYFAQEALTVL 585

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 42.9 bits (99), Expect = 5e-05
 Identities = 23/286 (8%), Positives = 62/286 (21%), Gaps = 47/286 (16%)

Query: 96  TQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV 155
           ++   L +  +    +E+ +          L+ +     +  +A  L             
Sbjct: 7   SKEYGLYNQCKKLNDDELFR----------LLDDHNSLKRISSARVLQLRG--------- 47

Query: 156 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA 215
                AV + ++  +  +   R+   + LG +                   L        
Sbjct: 48  --GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE------DNVFNILNNMALNDK 99

Query: 216 KLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT 275
              +   A  + +  C+  P          +             V     +A+S ++D  
Sbjct: 100 SACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKA 155

Query: 276 -----------NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCI 324
                       +       A                 +         +           
Sbjct: 156 TIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYR 215

Query: 325 ITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDA 370
                L  L   L  +    +  +       +  G++  +  +   
Sbjct: 216 KDKRVLSVLCDELKKNT---VYDDIIEAAGEL--GDKTLLPVLDTM 256

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.0 bits (94), Expect = 4e-04
 Identities = 29/287 (10%), Positives = 80/287 (27%), Gaps = 43/287 (14%)

Query: 162 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLR 221
             +    + SP  ++R  +   L  ++ D+                   L +       R
Sbjct: 7   AQLLENSILSPDQNIRLTSETQLKKLSNDNF--------LQFAGLSSQVLIDENTKLEGR 58

Query: 222 NATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQA 281
                                  A   L   + S D              +     ++  
Sbjct: 59  IL---------------------AALTLKNELVSKDSVK-------TQQFAQRWITQVSP 90

Query: 282 VIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH 341
             +  +    +  L    P +   A + +  I   +            +  ++       
Sbjct: 91  EAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWP---ELMKIMVDNTGAEQ 147

Query: 342 KKSIKKEACWTISNITAGNRDQIQAVIDA--GLVGPLVNLLQNAEF--DIKKEAAWAISN 397
            +++K+ +   +  +      Q QA++ +   ++  +V   Q+ E    ++  A  A+++
Sbjct: 148 PENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALAD 207

Query: 398 ATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV 444
           +     +   +   R   ++ +C+     D  +       L  I+  
Sbjct: 208 SLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSK 254

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 29/213 (13%), Positives = 67/213 (31%), Gaps = 14/213 (6%)

Query: 107 SPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV 166
           SP  +  I++  +       +    P++   AA  +  IA     +         + I V
Sbjct: 89  SPEAKNQIKTNALT-----ALVSIEPRIANAAAQLIAAIADIELPHGAW---PELMKIMV 140

Query: 167 KLLASPSDD-VREQAVWALGNVAGDSPRCRDLVLSQ--GALIPLLAQLNERAKLSMLR-N 222
               +   + V+  ++ ALG +   +      ++S     LI ++           +R  
Sbjct: 141 DNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLA 200

Query: 223 ATWTLSNFCR--GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQ 280
           A   L++             +    +  + +   + D EV   A   L  +       ++
Sbjct: 201 ALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMK 260

Query: 281 AVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 313
             +E  +    +  +  P+  V    +     I
Sbjct: 261 PYMEQALYALTIATMKSPNDKVASMTVEFWSTI 293

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

 Score = 37.0 bits (85), Expect = 0.003
 Identities = 21/161 (13%), Positives = 45/161 (27%), Gaps = 22/161 (13%)

Query: 159 HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLA--QLNERAK 216
           +  V     L+    + VR    + L        +   L+  +   + +    +L     
Sbjct: 65  YSPVEALTPLIRDSDEVVRRAVAYRLP-----REQLSALMFDEDREVRITVADRLPLEQL 119

Query: 217 LSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDAC------WALSY 270
             M  +  + +  +   +  P           L + +   D +V                
Sbjct: 120 EQMAADRDYLVRAYVVQRIPP---------GRLFRFMRDEDRQVRKLVAKRLPEESLGLM 170

Query: 271 LSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVG 311
             D   +  + V        L+ELL  P  +V + A+    
Sbjct: 171 TQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEHAS 211

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 111

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 35.3 bits (80), Expect = 0.003
 Identities = 19/140 (13%), Positives = 36/140 (25%), Gaps = 34/140 (24%)

Query: 169 LASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLS 228
           +A  +  VR     AL  +  +            A  PLL  L+          A    +
Sbjct: 1   MADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGN 48

Query: 229 NFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVC 288
                           A+  L +L+  +   V + A  +L  +                 
Sbjct: 49  FQD-----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGGERV-----------R 86

Query: 289 PRLVELLGHPSPSVLIPALR 308
             + +L    +      A+ 
Sbjct: 87  AAMEKLAETGTGFARKVAVN 106

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	532
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.81
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.78
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.76
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.72
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.67
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.54
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.46
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.43
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.42
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.36
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.36
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.33
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.21
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.16
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.14
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.12
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.09
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.03
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.9
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.82
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.61
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.56
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.4
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.22
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.46
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.29
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	97.07
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	96.8
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.39
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	96.07
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	95.14
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	95.01
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	94.85
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	93.36
d2jaka1	343	Serine/threonine-protein phosphatase 2A regulatory	91.33
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	87.25
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	83.39
d1w9ca_	321	Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax	81.22
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	80.33

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-62  Score=505.87  Aligned_cols=491  Identities=56%  Similarity=0.841  Sum_probs=426.2

Q ss_pred             chHHHhhhcCC-C-CCchHHhhhhhHHHHHHHHHhhHHHHHhhhhhccCCCCCCCCCC------CccchhhhhhccHHHH
Q 009568            8 RAEVRRNRYKV-A-VDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPPPAP------ASNLNLQTKLESLPAM   79 (532)
Q Consensus         8 ~~~~~~~~~k~-~-~~~~~~~~~r~~~~~~~Rk~~r~~~~~~~r~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~l   79 (532)
                      .+++|++.||+ | .+++|+||||+++.++|||+||++.|+|||+.....+...+..+      ..........+.++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~e~r~kR~~~~veiRk~kr~e~l~kkR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   81 (503)
T d1wa5b_           2 VPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQM   81 (503)
T ss_dssp             CCGGGCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC----------------------------CCHHHH
T ss_pred             CchHHhHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHHhhcCCCcccccccccchhccccchhhHHHHHHHHHHHHH
Confidence            46789999998 6 49999999999999999999999999999965432221111100      0011112223578999


Q ss_pred             HhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhC
Q 009568           80 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH  159 (532)
Q Consensus        80 v~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~  159 (532)
                      ++.+.+++...+..|+..++++++.+++++++.+++.|++|.|+.+++.+.++.++..|+|+|++++.+++.....+.+.
T Consensus        82 ~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~  161 (503)
T d1wa5b_          82 TQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDA  161 (503)
T ss_dssp             HHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhC
Confidence            99999999999999999999999887788999999999999999999876658899999999999999899999999999


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC-CCCC
Q 009568          160 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPP  238 (532)
Q Consensus       160 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~-~~~~  238 (532)
                      |+++.++.+|.+++.++++.|+|+|+||+.+++.+|..+.+.|++++++.++ .+.+..+++.++|+|++++... +...
T Consensus       162 g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll-~~~~~~~~~~~~~~l~nl~~~~~~~~~  240 (503)
T d1wa5b_         162 DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQPD  240 (503)
T ss_dssp             TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred             CChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhc-ccCCHHHHHHHHHHHHHHhcCCccchH
Confidence            9999999999999999999999999999999999999999999999999999 6677889999999999999886 5556


Q ss_pred             cccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCc
Q 009568          239 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD  318 (532)
Q Consensus       239 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~  318 (532)
                      .....+++|.++.++.+.|++++..++|++.+++...++....+++.|+++.++.++.++++.++.+++.++++++.+.+
T Consensus       241 ~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~  320 (503)
T d1wa5b_         241 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND  320 (503)
T ss_dssp             HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHH
Confidence            66778999999999999999999999999999999888888889999999999999999999999999999999999988


Q ss_pred             chhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHh
Q 009568          319 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNA  398 (532)
Q Consensus       319 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl  398 (532)
                      ..+..+++.|+++.+..++.++ ++.+++.++|+|+|++.+++..+..+++.|+++.++.++.+.+++++.+|+|+|+|+
T Consensus       321 ~~~~~~~~~~~l~~l~~ll~~~-~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl  399 (503)
T d1wa5b_         321 LQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNA  399 (503)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHhhhccchHHHHHHHhcCC-CHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHH
Confidence            8888899999999999999998 999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCC--CHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHH
Q 009568          399 TSGG--THEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIEN  476 (532)
Q Consensus       399 ~~~~--~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~  476 (532)
                      +..+  .++...++++.|+++.|+++|+..|++++..++++|.+++..++........  ..+++...++++||+++|+.
T Consensus       400 ~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~--~~~~~~~~iee~g~~~~i~~  477 (503)
T d1wa5b_         400 SSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGL--NINENADFIEKAGGMEKIFN  477 (503)
T ss_dssp             HHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTC--SSCHHHHHHHHTTHHHHHHG
T ss_pred             HhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcc--cchHHHHHHHHCCCHHHHHH
Confidence            9754  3567888999999999999999999999999999999999988764432211  46889999999999999999


Q ss_pred             HhcCCCHHHHHHHHHHHHHhCCCCcc
Q 009568          477 LQSHDNNEIYEKAVKILETYWLEEDD  502 (532)
Q Consensus       477 L~~~~~~~v~~~a~~il~~~~~~~~~  502 (532)
                      |++|+|++|+++|.+||++||++|||
T Consensus       478 Lq~~~~~~i~~~A~~il~~~f~~~~~  503 (503)
T d1wa5b_         478 CQQNENDKIYEKAYKIIETYFGEEED  503 (503)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHSSSCC-
T ss_pred             HHcCCCHHHHHHHHHHHHHHcCCcCC
Confidence            99999999999999999999987764

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.1e-48  Score=387.78  Aligned_cols=417  Identities=52%  Similarity=0.863  Sum_probs=385.5

Q ss_pred             ccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 009568           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (532)
Q Consensus        74 ~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~  153 (532)
                      ..++.+++.++|++++.+..|+..++++++...+++++.+++.|++|.|+++|++.+++++|..|+|+|.+++.++++.+
T Consensus        13 ~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~   92 (434)
T d1q1sc_          13 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT   92 (434)
T ss_dssp             CCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhh
Confidence            57899999999999999999999999999877677788999999999999999866558999999999999999889999


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhh----hhHHHHHHHHHhhh
Q 009568          154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA----KLSMLRNATWTLSN  229 (532)
Q Consensus       154 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~----~~~~~~~a~~~L~~  229 (532)
                      ..+++.|+++.|+.+|.+++..+++.|+++|+|++.+++..+..+.+.|++..++.++....    .....+.++|++++
T Consensus        93 ~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~  172 (434)
T d1q1sc_          93 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN  172 (434)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred             hHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999985332    23567889999999


Q ss_pred             ccCCC-CCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHH
Q 009568          230 FCRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALR  308 (532)
Q Consensus       230 L~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~  308 (532)
                      ++... +........+++|.+..++.+++++++..++|++++++..++.....+...|+++.++.++.++++.++..+++
T Consensus       173 ~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~  252 (434)
T d1q1sc_         173 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR  252 (434)
T ss_dssp             HTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred             HhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhh
Confidence            99986 44445566789999999999999999999999999999888888788889999999999999999999999999


Q ss_pred             HHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHH
Q 009568          309 TVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIK  388 (532)
Q Consensus       309 ~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  388 (532)
                      +|++++.+++.....+++.|+++.+..++.++ ++.++..|+|+|++++.++.+....+.+.|+++.++.++.+++++++
T Consensus       253 ~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~  331 (434)
T d1q1sc_         253 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ  331 (434)
T ss_dssp             HHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHH
T ss_pred             hhhhHHhhhhHHHHHHHhccccchHHHhhccc-chhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHH
Confidence            99999998888888899999999999999998 99999999999999999888888889999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHh
Q 009568          389 KEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEA  468 (532)
Q Consensus       389 ~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (532)
                      ..|+|+|.|++..++.+....+.+.|+++.|+++++++|++++..++++|.++++.+++..       ..+++...+++.
T Consensus       332 ~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~-------~~~~~~~~~~~~  404 (434)
T d1q1sc_         332 KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-------ETEKLSIMIEEC  404 (434)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTT-------CHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcC-------CcHHHHHHHHHc
Confidence            9999999999998888999999999999999999999999999999999999999887653       467799999999


Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009568          469 EGLEKIENLQSHDNNEIYEKAVKILETYWL  498 (532)
Q Consensus       469 g~~~~l~~L~~~~~~~v~~~a~~il~~~~~  498 (532)
                      ||++.|+.|++|+|++|++.|.++|++||+
T Consensus       405 ~~~~~i~~L~~~~n~~i~~~a~~il~~~f~  434 (434)
T d1q1sc_         405 GGLDKIEALQRHENESVYKASLNLIEKYFS  434 (434)
T ss_dssp             TSHHHHHHHHTCSSHHHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999995

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.1e-33  Score=284.09  Aligned_cols=366  Identities=25%  Similarity=0.352  Sum_probs=320.9

Q ss_pred             ccHHHHHhhhcC-CChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009568           74 ESLPAMVAGVWS-DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN  152 (532)
Q Consensus        74 ~~l~~lv~~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~  152 (532)
                      +.+|.++..+++ .++.++..|+++|.++++.. ......+...|++|.++.+|.+++ .+++..|+|+|+|++..+++.
T Consensus       119 g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~-~~~~~~~~~~g~i~~l~~lL~s~~-~~i~~~a~~~L~nia~~~~~~  196 (503)
T d1wa5b_         119 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTDY  196 (503)
T ss_dssp             TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHhCCChHHHHHHhcCCC-hhHHHHHHHHHHHHhhhhHHH
Confidence            578999999985 46779999999999998763 445667789999999999999988 899999999999999988999


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccC
Q 009568          153 TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR  232 (532)
Q Consensus       153 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~  232 (532)
                      +..+.+.|+++.|+.++.+.+..++..++|+|.+++.............++++.++.++ .+.+.+++..++|++.+++.
T Consensus       197 r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l-~~~d~~~~~~~~~~l~~l~~  275 (503)
T d1wa5b_         197 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSD  275 (503)
T ss_dssp             HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999999976554445555677899999998 77888999999999999998


Q ss_pred             CCCC-CCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHH
Q 009568          233 GKPQ-PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVG  311 (532)
Q Consensus       233 ~~~~-~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~  311 (532)
                      ..+. .......++++.++.++.++++.+...++.++++++.+.+.....+++.|+++.+..++.++++.++..++++|+
T Consensus       276 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~  355 (503)
T d1wa5b_         276 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS  355 (503)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             CCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            6532 233344688999999999999999999999999999988888888999999999999999999999999999999


Q ss_pred             HhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHHHHhcCchhHH
Q 009568          312 NIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA---GNRDQIQAVIDAGLVGPLVNLLQNAEFDIK  388 (532)
Q Consensus       312 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  388 (532)
                      |++.+++.....+++.|+++.++.++.+. +..++.+|+|+|+|++.   ..++.+..+++.|+++.|+.++...+.++.
T Consensus       356 nl~~~~~~~~~~i~~~~~l~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~  434 (503)
T d1wa5b_         356 NITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII  434 (503)
T ss_dssp             HHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHH
T ss_pred             HHhhccHHHHHHHHHccccchhHHhcccC-ChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHH
Confidence            99999888888899999999999999988 99999999999999986   245678889999999999999999999999


Q ss_pred             HHHHHHHHHhhcCC----------CHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 009568          389 KEAAWAISNATSGG----------THEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILK  443 (532)
Q Consensus       389 ~~a~~aL~nl~~~~----------~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~  443 (532)
                      ..++.+|.++...+          .......+.+.|+++.|..+..+++.++...|.+.|...+.
T Consensus       435 ~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq~~~~~~i~~~A~~il~~~f~  499 (503)
T d1wa5b_         435 EVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFG  499 (503)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            99999999987422          12344556688999999888889999999999998887764

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.9e-32  Score=273.45  Aligned_cols=366  Identities=26%  Similarity=0.410  Sum_probs=317.4

Q ss_pred             hccHHHHHhhhcC-CChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009568           73 LESLPAMVAGVWS-DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE  151 (532)
Q Consensus        73 ~~~l~~lv~~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~  151 (532)
                      .+.+|.|++.|++ +++.++..|+++|.++++.. +.....+++.|++|.|+.+|.+++ ++++..|+++|++++..+++
T Consensus        55 ~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~-~~~~~~i~~~~~i~~l~~~L~~~~-~~~~~~a~~~L~nl~~~~~~  132 (434)
T d1q1sc_          55 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSA  132 (434)
T ss_dssp             TTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHH
T ss_pred             CCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC-hhhhhHhhhccchhhhhhccccCC-HHHHHHHHHHHHHHhccchH
Confidence            3679999999975 45789999999999998753 445677889999999999999988 99999999999999998889


Q ss_pred             hHHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHH
Q 009568          152 NTKVVIDHGAVPIFVKLLASPS-----DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWT  226 (532)
Q Consensus       152 ~~~~i~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~  226 (532)
                      .+..+.+.|+++.|+.++...+     ......++|++.+++.............++++.+..++ .+.+++++..++|+
T Consensus       133 ~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll-~~~~~~~~~~a~~~  211 (434)
T d1q1sc_         133 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWA  211 (434)
T ss_dssp             HHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHH-hccccchhhhHHhh
Confidence            9999999999999999997643     35667889999999877655555555566788888888 77788999999999


Q ss_pred             hhhccCCCC-CCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhh
Q 009568          227 LSNFCRGKP-QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIP  305 (532)
Q Consensus       227 L~~L~~~~~-~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~  305 (532)
                      +.+++...+ ........++++.++.++.++++.++..+++++.+++...+.....+++.|+++.++.++.++++.++..
T Consensus       212 l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~  291 (434)
T d1q1sc_         212 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE  291 (434)
T ss_dssp             HHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHH
T ss_pred             hcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHH
Confidence            999998752 2223344689999999999999999999999999999888888888999999999999999999999999


Q ss_pred             HHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHHhcCc
Q 009568          306 ALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQAVIDAGLVGPLVNLLQNAE  384 (532)
Q Consensus       306 al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~  384 (532)
                      ++++|++++.........+.+.|+++.++.++.+. ++.++..|+|+|+|++. ++++.+..+.+.|+++.|+.++.+.+
T Consensus       292 a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d  370 (434)
T d1q1sc_         292 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD  370 (434)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSC
T ss_pred             HHHHHhhhccccchhHHHHhhhhhHHHHHHHHhcc-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCC
Confidence            99999999998888888889999999999999998 99999999999999987 56788888999999999999999999


Q ss_pred             hhHHHHHHHHHHHhhc-----CCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 009568          385 FDIKKEAAWAISNATS-----GGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENIL  442 (532)
Q Consensus       385 ~~v~~~a~~aL~nl~~-----~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~  442 (532)
                      ++++..++++|.++..     .........+.+.|+++.|..+..+++++++..+.+.|.+.+
T Consensus       371 ~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~~f  433 (434)
T d1q1sc_         371 TKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF  433 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            9999999999999874     222334556668899999989989999999999999887754

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9e-31  Score=269.56  Aligned_cols=401  Identities=18%  Similarity=0.192  Sum_probs=341.9

Q ss_pred             hccHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009568           73 LESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN  152 (532)
Q Consensus        73 ~~~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~  152 (532)
                      .+.++.++..|+++++.++..|+.+|.+++... ......+.+.|++|.|+.+|++++ ++++..++++|.+++..+.+.
T Consensus       100 ~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~  177 (529)
T d1jdha_         100 SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQES  177 (529)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCCHHHHHHHhCCCCHHHHHHHHHHHHHhhccc-chhhhHHHhcCCchHHHHHHHccC-hHHHHHHHHHHHHHhhhhhHH
Confidence            367999999999999999999999999998763 444566779999999999999988 999999999999999988999


Q ss_pred             HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhcc
Q 009568          153 TKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFC  231 (532)
Q Consensus       153 ~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~  231 (532)
                      +..+...|+++.|+.++.+ ....++..+++++.+++.+ +..+..+.+.|+++.|+.++ .+.+..+...+++++.+++
T Consensus       178 ~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~-~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~l~~ls  255 (529)
T d1jdha_         178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLS  255 (529)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhcc-ccccchhhhhhhhhhHHHHh-cccchhhhhhhhhHHHhcc
Confidence            9999999999999999965 5678999999999999764 55788889999999999999 7778899999999999998


Q ss_pred             CCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhC--CCCccchhhHHHH
Q 009568          232 RGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG--HPSPSVLIPALRT  309 (532)
Q Consensus       232 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~v~~~al~~  309 (532)
                      ...  .......++++.|++++.++++.++..++++|++++..++.....+.+.++++.++..+.  .+.+.++..++++
T Consensus       256 ~~~--~~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~a  333 (529)
T d1jdha_         256 DAA--TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA  333 (529)
T ss_dssp             TTC--TTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccc--cchhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHH
Confidence            654  233345789999999999999999999999999999888888888889999999999884  4566788999999


Q ss_pred             HHHhhcCCcc---hhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCch-
Q 009568          310 VGNIVTGDDF---QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEF-  385 (532)
Q Consensus       310 L~nl~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~-  385 (532)
                      |++++.....   ....+...++++.++.++.++.+..++..+++++.|++.. ++....+.+.|+++.|+.++.+.+. 
T Consensus       334 L~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~-~~~~~~l~~~g~i~~L~~lL~~~~~~  412 (529)
T d1jdha_         334 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQD  412 (529)
T ss_dssp             HHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             hhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchh-hhhhhhhhhcccHHHHHHHHhcCCHH
Confidence            9999976543   3344567899999999998774567889999999999875 4556678899999999999976433 


Q ss_pred             ---------------------hHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 009568          386 ---------------------DIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV  444 (532)
Q Consensus       386 ---------------------~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~  444 (532)
                                           ++...++.++.+++.  .+.....+.+.|+++.|+.+|.++++.++..++.+|.++...
T Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~--~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~  490 (529)
T d1jdha_         413 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD  490 (529)
T ss_dssp             HC-----------CBTTBCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHcc--CHHHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcC
Confidence                                 456667778888875  456667777889999999999999999999999999998643


Q ss_pred             hhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009568          445 GEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETY  496 (532)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~  496 (532)
                      .+              ....+.+.|++..|.+|.+++|++++..|..+|.++
T Consensus       491 ~~--------------~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~l  528 (529)
T d1jdha_         491 KE--------------AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             HH--------------HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             hh--------------hHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            22              266788999999999999999999999999988754

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.9e-30  Score=267.04  Aligned_cols=404  Identities=17%  Similarity=0.177  Sum_probs=337.3

Q ss_pred             ccHHHHHhhhcC-CChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 009568           74 ESLPAMVAGVWS-DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN  152 (532)
Q Consensus        74 ~~l~~lv~~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~  152 (532)
                      +.++.++..|.+ ++++++..|+.+|..+...  .+....+++.|++|.|+.+|.+++ ++++..|+++|.+++.+++..
T Consensus        59 ~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~--~~~~~~i~~~g~i~~Li~lL~~~~-~~v~~~a~~aL~~l~~~~~~~  135 (529)
T d1jdha_          59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA  135 (529)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTH
T ss_pred             hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHCCCHHHHHHHhCCCC-HHHHHHHHHHHHHhhcccchh
Confidence            357889999874 6788999999999999753  566778889999999999999988 999999999999999988888


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccC
Q 009568          153 TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR  232 (532)
Q Consensus       153 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~  232 (532)
                      +..+.+.|+++.|+.+|+++++.++..++++|.+++..++..+..+...|++++++.++..+....++..+++++.+++.
T Consensus       136 ~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~  215 (529)
T d1jdha_         136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  215 (529)
T ss_dssp             HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred             hhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhc
Confidence            88899999999999999999999999999999999988888889999999999999999766678899999999999998


Q ss_pred             CCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHH
Q 009568          233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN  312 (532)
Q Consensus       233 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~n  312 (532)
                      ...........++++.|..++.+++..++..+++++.+++......   ....|+++.|+.++.+++..++..++++|++
T Consensus       216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~---~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~  292 (529)
T d1jdha_         216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN  292 (529)
T ss_dssp             STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             cccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccch---hhhhhcchhhhhhcccccHHHHHHHHHHHHh
Confidence            7654444556789999999999999999999999999998654422   2224789999999999999999999999999


Q ss_pred             hhcCCcchhHHHhhcCchHHHHHHhcC-CCchhHHHHHHHHHHHHhcCCH---HHHHHHHHcCCHHHHHHHHhcC-chhH
Q 009568          313 IVTGDDFQTQCIITYGALPYLLGLLTH-SHKKSIKKEACWTISNITAGNR---DQIQAVIDAGLVGPLVNLLQNA-EFDI  387 (532)
Q Consensus       313 l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~---~~~~~l~~~~~i~~L~~ll~~~-~~~v  387 (532)
                      ++.+++.....+.+.++++.++..+.. +..+.++..|+++|.+++....   .....+...+.++.|+.++..+ +..+
T Consensus       293 l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~  372 (529)
T d1jdha_         293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL  372 (529)
T ss_dssp             HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred             hccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHH
Confidence            999888888888899999999988843 2267889999999999997432   2334455789999999999876 4578


Q ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCH----------------------HHHHHHHHHHHHHHHhh
Q 009568          388 KKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDP----------------------RIVTVCLEGLENILKVG  445 (532)
Q Consensus       388 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~----------------------~v~~~al~~L~~l~~~~  445 (532)
                      +..+++++.|++..  ++....+.+.|+++.|+++|.+.+.                      +++..+..++..+....
T Consensus       373 ~~~~~~~l~~l~~~--~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~~  450 (529)
T d1jdha_         373 IKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV  450 (529)
T ss_dssp             HHHHHHHHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHhhcchh--hhhhhhhhhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHccCH
Confidence            88999999999875  3556678899999999999865433                      34555555555554321


Q ss_pred             hhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009568          446 EAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLE  499 (532)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~  499 (532)
                                    .-...+.+.|+++.|..+..+++++++..|...+..+...
T Consensus       451 --------------~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~  490 (529)
T d1jdha_         451 --------------HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD  490 (529)
T ss_dssp             --------------HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred             --------------HHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcC
Confidence                          1255677899999999999999999999999999887543

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.2e-26  Score=230.27  Aligned_cols=367  Identities=18%  Similarity=0.196  Sum_probs=279.4

Q ss_pred             CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q 009568          117 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD  196 (532)
Q Consensus       117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~  196 (532)
                      +.||.|+++|++++ ++++..|+++|+++|.++++.+..+.+.|+||.|+++|++++++++..|+++|++++.+++..+.
T Consensus         2 ~~ip~lv~~L~~~~-~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           2 LTIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CCHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CCHHHHHHHhCCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            46999999999999 99999999999999998999999999999999999999999999999999999999998888999


Q ss_pred             HHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhh----------------cCCCHHH
Q 009568          197 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLV----------------HSNDEEV  260 (532)
Q Consensus       197 ~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL----------------~~~d~~v  260 (532)
                      .+.+.|+++.++.++....++.++..++++|.+++....... ......++.+...+                ...+..+
T Consensus        81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v  159 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE-ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV  159 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHH-HHHHHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred             HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHH-HHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHH
Confidence            999999999999999777788999999999999998753322 22233444443332                3457889


Q ss_pred             HHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCC------CccchhhHHHHHHHhh--------------------
Q 009568          261 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP------SPSVLIPALRTVGNIV--------------------  314 (532)
Q Consensus       261 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~------~~~v~~~al~~L~nl~--------------------  314 (532)
                      +..+++++.+++...+.........|+++.++.++.+.      .......+...+.+..                    
T Consensus       160 ~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  239 (457)
T d1xm9a1         160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhh
Confidence            99999999999877666555555667888888877431      1111111111111110                    


Q ss_pred             ------------------------------cCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH--
Q 009568          315 ------------------------------TGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD--  362 (532)
Q Consensus       315 ------------------------------~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~--  362 (532)
                                                    .........+...++++.+..++....++.++..+++++.+++.....  
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~  319 (457)
T d1xm9a1         240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred             hhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccch
Confidence                                          011112222334456777888876654788899999999999874321  


Q ss_pred             ---HHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCC------CCHHHHHH
Q 009568          363 ---QIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC------PDPRIVTV  433 (532)
Q Consensus       363 ---~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~------~d~~v~~~  433 (532)
                         ....+.+.++++.|+.++.+++++++..+++++.+++...  +....+ ..++++.++.+|..      .+++++..
T Consensus       320 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~--~~~~~i-~~~~i~~li~~L~~~~~~~~~~~~v~~~  396 (457)
T d1xm9a1         320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP--LLHRVM-GNQVFPEVTRLLTSHTGNTSNSEDILSS  396 (457)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG--GGHHHH-HHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhCh--hHHHHH-HHhhHHHHHHHHhccccCcCCcHHHHHH
Confidence               1223346789999999999999999999999999998753  333443 34678999998864      23578899


Q ss_pred             HHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhc-CCCHHHHHHHHHHHHHhCCCCc
Q 009568          434 CLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQS-HDNNEIYEKAVKILETYWLEED  501 (532)
Q Consensus       434 al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~-~~~~~v~~~a~~il~~~~~~~~  501 (532)
                      ++.+|.++......             ....+.+.||++.|..+.. ++++.++..|..+|.++|...+
T Consensus       397 a~~~L~~l~~~~~~-------------~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~  452 (457)
T d1xm9a1         397 ACYTVRNLMASQPQ-------------LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE  452 (457)
T ss_dssp             HHHHHHHHHTTCTH-------------HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred             HHHHHHHHhcCCHH-------------HHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHh
Confidence            99999999854322             4667888999999999965 5678999999999999987654

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2e-24  Score=215.75  Aligned_cols=362  Identities=16%  Similarity=0.188  Sum_probs=267.6

Q ss_pred             cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (532)
Q Consensus        75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  154 (532)
                      .+|.+++.|++++++++..|+.+|.+++.+. +.....+.+.|+||.|+++|++++ ++++..|+++|.+++.++++.+.
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCcHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCCHHHHH
Confidence            5799999999999999999999999998753 567888889999999999999988 99999999999999988999999


Q ss_pred             HHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhh---------------hhhhhH
Q 009568          155 VVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN---------------ERAKLS  218 (532)
Q Consensus       155 ~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~---------------~~~~~~  218 (532)
                      .+.+.|+++.|+.++.+ .++.++..++++|++++..... +......+ ++.++..+.               ...+..
T Consensus        81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL-KEELIADA-LPVLADRVIIPFSGWCDGNSNMSREVVDPE  158 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSST-HHHHHHHH-HHHHHHHTTHHHHTCC---------CCCHH
T ss_pred             HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhh-HHHHHhcc-cHHHHHHHHhhhhhhhcchhhhhcccccHH
Confidence            99999999999998865 6789999999999999876543 33333333 444444331               233678


Q ss_pred             HHHHHHHHhhhccCCCCCCC-cccccchHHHHHHhhcCC------CHHHHHHHHHHHHHhcc------------------
Q 009568          219 MLRNATWTLSNFCRGKPQPP-FDQVRPALPALAQLVHSN------DEEVLTDACWALSYLSD------------------  273 (532)
Q Consensus       219 ~~~~a~~~L~~L~~~~~~~~-~~~~~~~l~~L~~lL~~~------d~~v~~~a~~~L~~l~~------------------  273 (532)
                      ++..+++++.+++....... .....++++.++.++.+.      .......+...+.....                  
T Consensus       159 v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  238 (457)
T d1xm9a1         159 VFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR  238 (457)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhh
Confidence            89999999999987753222 223356788888777532      11111111111111100                  


Q ss_pred             --------------------------------CChhHHHHHHHhCchHHHHHhhCC-CCccchhhHHHHHHHhhcCCcc-
Q 009568          274 --------------------------------GTNDKIQAVIEAGVCPRLVELLGH-PSPSVLIPALRTVGNIVTGDDF-  319 (532)
Q Consensus       274 --------------------------------~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~~-  319 (532)
                                                      ........+...++++.++.++.. .++.+...+.+++.+++..... 
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~  318 (457)
T d1xm9a1         239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM  318 (457)
T ss_dssp             ---------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred             hhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccc
Confidence                                            000000112222455666666644 4567788889999999875542 


Q ss_pred             ----hhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC------chhHHH
Q 009568          320 ----QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA------EFDIKK  389 (532)
Q Consensus       320 ----~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~------~~~v~~  389 (532)
                          ....+.+.++++.|+.++.++ ++.++..+++++++++... .... .+..+.++.++.++...      +.+++.
T Consensus       319 ~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~l~~La~~~-~~~~-~i~~~~i~~li~~L~~~~~~~~~~~~v~~  395 (457)
T d1xm9a1         319 SSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRHP-LLHR-VMGNQVFPEVTRLLTSHTGNTSNSEDILS  395 (457)
T ss_dssp             HHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSG-GGHH-HHHHHTHHHHHHTTTSCCSCSTTHHHHHH
T ss_pred             hHHHHHHHHHHcCChHHHHhhhcCc-cHHHHHHHHHHHHHHhhCh-hHHH-HHHHhhHHHHHHHHhccccCcCCcHHHHH
Confidence                233455679999999999998 9999999999999998753 3333 34446789999988642      457999


Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCC-CHHHHHHHHHHHHHHHHh
Q 009568          390 EAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCP-DPRIVTVCLEGLENILKV  444 (532)
Q Consensus       390 ~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~-d~~v~~~al~~L~~l~~~  444 (532)
                      .|+.+|.+++.. +++....+.+.|+++.|+.++.+. ++.++..|..+|.++...
T Consensus       396 ~a~~~L~~l~~~-~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~  450 (457)
T d1xm9a1         396 SACYTVRNLMAS-QPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS  450 (457)
T ss_dssp             HHHHHHHHHHTT-CTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred             HHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcC
Confidence            999999999976 457778888899999999998765 678999999999998643

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.6e-19  Score=167.00  Aligned_cols=194  Identities=16%  Similarity=0.154  Sum_probs=174.3

Q ss_pred             HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHH
Q 009568          132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK-LLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQ  210 (532)
Q Consensus       132 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~l  210 (532)
                      .+.+..|+.+|.+++. +.++...+...|+++.++. ++.++++.++..|+++|++++.+++..+..+.+.|+++.|+.+
T Consensus        31 ~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~l  109 (264)
T d1xqra1          31 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  109 (264)
T ss_dssp             HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence            6889999999999997 7788888999999999986 7888999999999999999999999999999999999999999


Q ss_pred             hhhhhhhHHHHHHHHHhhhccCCCC-CCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchH
Q 009568          211 LNERAKLSMLRNATWTLSNFCRGKP-QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCP  289 (532)
Q Consensus       211 l~~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~  289 (532)
                      +....++.++..++|+|++++++.+ ........++++.|++++.++++.++..++++|.+++..++.....+.+.|+++
T Consensus       110 L~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~  189 (264)
T d1xqra1         110 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ  189 (264)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred             hhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHH
Confidence            9666788999999999999998873 333445678999999999999999999999999999988888888999999999


Q ss_pred             HHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhh
Q 009568          290 RLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIIT  326 (532)
Q Consensus       290 ~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~  326 (532)
                      .|+.+|.++++.++..|+++|++|+..++........
T Consensus       190 ~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~  226 (264)
T d1xqra1         190 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE  226 (264)
T ss_dssp             HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            9999999999999999999999999888766555544

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=4.5e-18  Score=157.06  Aligned_cols=229  Identities=18%  Similarity=0.171  Sum_probs=186.2

Q ss_pred             CCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHH-hhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHH
Q 009568          255 SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE-LLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYL  333 (532)
Q Consensus       255 ~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~-lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L  333 (532)
                      ..|.+.+..|+.+|.+++.. .+....+...|.++.++. ++.++++.++..|+++|++++.+++.....+.+.|++|.|
T Consensus        28 ~~~~~~~~~Al~~L~~L~~~-~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L  106 (264)
T d1xqra1          28 AADQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL  106 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence            45678899999999999965 445567888899998875 7788999999999999999999888777788899999999


Q ss_pred             HHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc
Q 009568          334 LGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVRE  413 (532)
Q Consensus       334 ~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~  413 (532)
                      +.++.+..++.++..++|+|++++.+++.....+...|+++.|+.++.+++..++..++++|.+++.. .++....+.+.
T Consensus       107 v~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~  185 (264)
T d1xqra1         107 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSM  185 (264)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHT
T ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhc-cHHHHHHHHHh
Confidence            99997554789999999999999999998888899999999999999999999999999999999875 45667778899


Q ss_pred             CChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHH--HhccHHHHHH---H-h-cCCCHHHH
Q 009568          414 GCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVE--EAEGLEKIEN---L-Q-SHDNNEIY  486 (532)
Q Consensus       414 ~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~l~~---L-~-~~~~~~v~  486 (532)
                      |+++.|+.+|++++++++..++++|.++....+...             ..+.  +.+....+..   + . .....+..
T Consensus       186 ~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~-------------~~~~~~~l~~~~~L~~~~~~~~~~~~~~e~~  252 (264)
T d1xqra1         186 GMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGV-------------RECREPELGLEELLRHRCQLLQQHEEYQEEL  252 (264)
T ss_dssp             THHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHH-------------HHHHCGGGCHHHHHHHHHHHHTTCGGGHHHH
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHH-------------HHHHHhhhhHHHHHHHHHHhccchHHHHHHH
Confidence            999999999999999999999999999986544321             1111  1111222222   2 1 23344556


Q ss_pred             HHHHHHHHHhCC
Q 009568          487 EKAVKILETYWL  498 (532)
Q Consensus       487 ~~a~~il~~~~~  498 (532)
                      +.+..+++.+|+
T Consensus       253 ~~~~~ll~~~~~  264 (264)
T d1xqra1         253 EFCEKLLQTCFS  264 (264)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHHHHhcC
Confidence            788888888874

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=7.4e-17  Score=166.86  Aligned_cols=378  Identities=12%  Similarity=0.137  Sum_probs=265.1

Q ss_pred             HHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 009568           77 PAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVV  156 (532)
Q Consensus        77 ~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i  156 (532)
                      +.+.+.++++++.++..|+..+..++...  +.  ......++|.+..++.+.+ ..+|..++.+|++++..-.   ...
T Consensus       206 ~~l~~l~~d~~~~vr~~a~~~l~~i~~~~--~~--~~~~~~i~~~l~~~~~D~~-~~Vr~~~~~~l~~l~~~~~---~~~  277 (588)
T d1b3ua_         206 PMFSNLASDEQDSVRLLAVEACVNIAQLL--PQ--EDLEALVMPTLRQAAEDKS-WRVRYMVADKFTELQKAVG---PEI  277 (588)
T ss_dssp             HHHHHHHTCSCHHHHTTHHHHHHHHHHHS--CH--HHHHHHTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHC---HHH
T ss_pred             HHHHHHhcCCchhhHHHHHHHHHHhhccC--CH--HHHHHHHHHHHHHhccccc-HHHHHHHHHhHHHHHHHhh---hhh
Confidence            34444455555555555555555554421  11  1112236788888887777 7889988888888875211   112


Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCC
Q 009568          157 IDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP  235 (532)
Q Consensus       157 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~  235 (532)
                      ....+++.+..++.+++.+++..++..++.++... ...+....-..+++.+...+ .+.+..++..++.++..++..- 
T Consensus       278 ~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~-~d~~~~vr~~~~~~l~~~~~~~-  355 (588)
T d1b3ua_         278 TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPIL-  355 (588)
T ss_dssp             HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHHH-
T ss_pred             hhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhh-cCCChHHHHHHHHHHhhhhhcc-
Confidence            33356788889999999999999999999887432 22223333334566666666 6678889999988888876431 


Q ss_pred             CCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhc
Q 009568          236 QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT  315 (532)
Q Consensus       236 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~  315 (532)
                       ........++|.+..++.+++++++..++.++..+......  . -+...+++.+..++.+.++.++..++.+++.++.
T Consensus       356 -~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~--~-~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~  431 (588)
T d1b3ua_         356 -GKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI--R-QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAG  431 (588)
T ss_dssp             -CHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH--H-HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             -chhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcch--h-hhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence             11223456788999999999999999998888776642211  1 1223578889999999999999999999999875


Q ss_pred             CCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHH
Q 009568          316 GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG-NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWA  394 (532)
Q Consensus       316 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a  394 (532)
                      ....   ..+...+.+.+..++.++ ...||..|+++|+.++.. .++.    ....++|.+..++.++++.+|..++.+
T Consensus       432 ~~~~---~~~~~~l~~~l~~~l~D~-~~~VR~~A~~~L~~l~~~~~~~~----~~~~i~~~l~~~~~~~~~~~R~~~~~~  503 (588)
T d1b3ua_         432 QLGV---EFFDEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFC  503 (588)
T ss_dssp             HHCG---GGCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHH
T ss_pred             HcCh---HhHHHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHhCcHH----HHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            3211   122334667888888888 899999999999999862 2221    223478999999999999999999999


Q ss_pred             HHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHH
Q 009568          395 ISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKI  474 (532)
Q Consensus       395 L~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l  474 (532)
                      +..+......+    .....+++.+..+++++.+.|+..++++|..+....+..           .+.     ....+.+
T Consensus       504 l~~l~~~~~~~----~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~-----------~~~-----~~i~~~l  563 (588)
T d1b3ua_         504 INVLSEVCGQD----ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS-----------TLQ-----SEVKPIL  563 (588)
T ss_dssp             HHHHHHHHHHH----HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH-----------HHH-----HHHHHHH
T ss_pred             HHHHHHHcChH----HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcH-----------hHH-----HHHHHHH
Confidence            99887632222    223458999999999999999999999999986544321           112     2235788


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHh
Q 009568          475 ENLQSHDNNEIYEKAVKILETY  496 (532)
Q Consensus       475 ~~L~~~~~~~v~~~a~~il~~~  496 (532)
                      +.|+++++.+|+..|.+.++..
T Consensus       564 ~~L~~D~d~dVr~~A~~al~~l  585 (588)
T d1b3ua_         564 EKLTQDQDVDVKYFAQEALTVL  585 (588)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHT
T ss_pred             HHHcCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999998865

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.3e-15  Score=155.53  Aligned_cols=382  Identities=12%  Similarity=0.097  Sum_probs=280.5

Q ss_pred             cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (532)
Q Consensus        75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  154 (532)
                      .++.+.+.+.+.++.+|..++..+..++..-.    ...+...++|.+..++++++ +.+|..|+.++..++...+..  
T Consensus       165 l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~----~~~~~~~l~~~l~~l~~d~~-~~vr~~a~~~l~~i~~~~~~~--  237 (588)
T d1b3ua_         165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLE----LDNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE--  237 (588)
T ss_dssp             HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSC----HHHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH--
T ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHHHHhc----HHHHHHHHHHHHHHHhcCCc-hhhHHHHHHHHHHhhccCCHH--
Confidence            35667777788899999999999999987531    12334567888999998888 899999999999987532221  


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC
Q 009568          155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  234 (532)
Q Consensus       155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~  234 (532)
                       .....+++.+..++.++++.+|..++.+|++++....   .......+++.+..++ .+.+.+++..++.++..++..-
T Consensus       238 -~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~ll-~d~~~~vr~~a~~~l~~~~~~l  312 (588)
T d1b3ua_         238 -DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG---PEITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENL  312 (588)
T ss_dssp             -HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC---HHHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTS
T ss_pred             -HHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhh---hhhhhhhhhHHHHHHH-hccchHHHHHHHHHHHHHHHHH
Confidence             1122367888999999999999999999999874211   1223345677777777 6778899999999999988764


Q ss_pred             CCCC--cccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHH
Q 009568          235 PQPP--FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN  312 (532)
Q Consensus       235 ~~~~--~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~n  312 (532)
                      ....  ......++|.+...+.+.++.++..++.++..++..-..   ......+++.+..++.++++.++..++.+++.
T Consensus       313 ~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~---~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~  389 (588)
T d1b3ua_         313 SADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK---DNTIEHLLPLFLAQLKDECPEVRLNIISNLDC  389 (588)
T ss_dssp             CTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH---HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHH
T ss_pred             hhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccch---hHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence            3222  223467888899999999999999998888877632111   11223578889999999999999999888887


Q ss_pred             hhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHhcCchhHHHHH
Q 009568          313 IVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG-NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEA  391 (532)
Q Consensus       313 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a  391 (532)
                      +.....  ...+ ...+++.+..++.+. ++.+|..++.+++.++.. ..+.    +...+.+.+..++.++...||..|
T Consensus       390 ~~~~~~--~~~~-~~~ll~~l~~~~~d~-~~~~r~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~D~~~~VR~~A  461 (588)
T d1b3ua_         390 VNEVIG--IRQL-SQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVEF----FDEKLNSLCMAWLVDHVYAIREAA  461 (588)
T ss_dssp             HHHHSC--HHHH-HHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGGG----CCHHHHHHHHHGGGCSSHHHHHHH
T ss_pred             HHhhcc--hhhh-hhHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHcChHh----HHHHHHHHHHhhccCCchhHHHHH
Confidence            765322  1112 235678899999988 999999999999988751 1111    112245677788888889999999


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccH
Q 009568          392 AWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGL  471 (532)
Q Consensus       392 ~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  471 (532)
                      +++|+.++....++.    ....+++.+..++.+++...+..++.++..+.......                ......+
T Consensus       462 ~~~L~~l~~~~~~~~----~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~----------------~~~~~il  521 (588)
T d1b3ua_         462 TSNLKKLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD----------------ITTKHML  521 (588)
T ss_dssp             HHHHHHHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH----------------HHHHHTH
T ss_pred             HHHHHHHHHHhCcHH----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChH----------------HHHHHHH
Confidence            999999986444332    22347889999999999999999999999887654321                1123457


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009568          472 EKIENLQSHDNNEIYEKAVKILETYWLE  499 (532)
Q Consensus       472 ~~l~~L~~~~~~~v~~~a~~il~~~~~~  499 (532)
                      +.+..+..++.+.|+..+.+.+..++..
T Consensus       522 p~ll~~~~D~v~nVR~~a~~~l~~i~~~  549 (588)
T d1b3ua_         522 PTVLRMAGDPVANVRFNVAKSLQKIGPI  549 (588)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            7888889999999999988888876543

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=3.5e-12  Score=142.44  Aligned_cols=409  Identities=12%  Similarity=0.105  Sum_probs=265.0

Q ss_pred             cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (532)
Q Consensus        75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  154 (532)
                      .+..+++.++++|++.|+.|+..|.+.+... ....+.-....+++.|+++|.+.+ +++|..|+.+|+.++..-++...
T Consensus         4 ~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~-~~~~~~~~~~~i~~~ll~~L~D~~-~~Vq~~A~k~l~~l~~~~~~~~~   81 (1207)
T d1u6gc_           4 HISNLLEKMTSSDKDFRFMATNDLMTELQKD-SIKLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEYQV   81 (1207)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSS-CCSCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             hHHHHHHhcCCCCHhHHHHHHHHHHHHHhhc-ccccChHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCcHhhH
Confidence            3678899999999999999999999988753 222222223348999999999888 99999999999999875443321


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch------hHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhh
Q 009568          155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR------CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLS  228 (532)
Q Consensus       155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~------~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~  228 (532)
                          ..+++.|+..+.+++...+..+..+|..+...-+.      ....+ ...+++.+...+....+..++..++.++.
T Consensus        82 ----~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~~v~~~al~~l~  156 (1207)
T d1u6gc_          82 ----ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIMA  156 (1207)
T ss_dssp             ----HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence                13468888888888888898888888776532211      11111 11133444444444556778888888888


Q ss_pred             hccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhh-CCCCccchhhHH
Q 009568          229 NFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-GHPSPSVLIPAL  307 (532)
Q Consensus       229 ~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~al  307 (532)
                      .+....+..-......+++.+...+.++++.++..++.+++.++...+..   . -..+++.++..+ .+.+...+..++
T Consensus       157 ~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~---~-~~~~~~~ll~~l~~~~~~~~~~~~~  232 (1207)
T d1u6gc_         157 DMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---V-FVDLIEHLLSELSKNDSMSTTRTYI  232 (1207)
T ss_dssp             HHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHH
T ss_pred             HHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH---H-HHHHHHHHHHHHccCCCHHHHHHHH
Confidence            88766543333345678888888999999999999999999998654422   1 124566666655 455677788899


Q ss_pred             HHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH----HHHHHHHc--C----------
Q 009568          308 RTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD----QIQAVIDA--G----------  371 (532)
Q Consensus       308 ~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~----~~~~l~~~--~----------  371 (532)
                      .+++.++...+......+ ..+++.+...+.+. ++.+|..++.++..++...+.    ....++..  .          
T Consensus       233 ~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~  310 (1207)
T d1u6gc_         233 QCIAAISRQAGHRIGEYL-EKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNY  310 (1207)
T ss_dssp             HHHHHHHHHSSGGGTTSC-TTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-----
T ss_pred             HHHHHHHHHcchhhHHHH-HHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhh
Confidence            999999876553322111 36789999999988 899999999999888764322    11111110  0          


Q ss_pred             --------------------CHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHH
Q 009568          372 --------------------LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIV  431 (532)
Q Consensus       372 --------------------~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~  431 (532)
                                          ..+............+|..|+.+|..++.... +....+ -..+++.+...+.+.++.++
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~-~~l~~~-~~~~~~~L~~~l~d~~~~vr  388 (1207)
T d1u6gc_         311 DDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRH-EMLPEF-YKTVSPALISRFKEREENVK  388 (1207)
T ss_dssp             -------------------------------CTTHHHHHHHHHHHHHHTTCC-TTHHHH-HTTTHHHHHSTTSCSSSHHH
T ss_pred             hhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHH-HHHHHH-HHHHHHHHHHHhcCCchHHH
Confidence                                00111111223356899999999999987543 222222 34688999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhccCC-C--ccchHHHHHHH--HhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009568          432 TVCLEGLENILKVGEAEKNMGTA-T--ADVNQYAQLVE--EAEGLEKIENLQSHDNNEIYEKAVKILETYWL  498 (532)
Q Consensus       432 ~~al~~L~~l~~~~~~~~~~~~~-~--~~~~~~~~~~~--~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~  498 (532)
                      ..++.++..++............ .  ...+.....+.  -...++.+.....+.++.++..+..++..+..
T Consensus       389 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~  460 (1207)
T d1u6gc_         389 ADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVN  460 (1207)
T ss_dssp             HHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence            99999998887643221100000 0  00000011111  12345667777788899999888887776543

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=5.7e-13  Score=144.14  Aligned_cols=361  Identities=11%  Similarity=0.117  Sum_probs=221.5

Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 009568           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV  155 (532)
Q Consensus        76 l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  155 (532)
                      ++.+.+.+.++++..+..|+.++..++.+. ....... -..++|.++..+++++ +.+|..|+|+|+.++.........
T Consensus       397 l~~l~~~l~s~~~~~reaa~~alg~i~eg~-~~~~~~~-l~~li~~l~~~l~d~~-~~Vr~~a~~~l~~~~~~~~~~~~~  473 (888)
T d1qbkb_         397 LPLLKELLFHHEWVVKESGILVLGAIAEGC-MQGMIPY-LPELIPHLIQCLSDKK-ALVRSITCWTLSRYAHWVVSQPPD  473 (888)
T ss_dssp             HHHHHHTTTSSSHHHHHHHHHHHHHHTTTS-HHHHTTT-HHHHHHHHHHHTTSSC-HHHHHHHHHHHHHTHHHHHSSCHH
T ss_pred             HHHHHHhhccchhHHHHHHHHHhhhhhhhH-HHHhccc-chhhhHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhhh
Confidence            355556777899999999999999887542 1111111 1246888999999888 999999999999987521111111


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCC
Q 009568          156 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP-RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  234 (532)
Q Consensus       156 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~  234 (532)
                      -.-..+++.++..+.++++.++..|+++|.+++.... .....+  ..+++.++..+. ..+......+..++..++...
T Consensus       474 ~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~--~~il~~l~~~l~-~~~~~~~~~~~~al~~l~~~~  550 (888)
T d1qbkb_         474 TYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAFS-KYQHKNLLILYDAIGTLADSV  550 (888)
T ss_dssp             HHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGH--HHHHHHHHHHTT-TCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHH--HHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHhh
Confidence            1224678888988888999999999999999974211 111111  123455555553 223334444444555444321


Q ss_pred             --CCCCcccccchHHHHHHhhcC--CCHHHHHHHHHHHHHhccC----ChhHHHHHHHhCchHHHH--------Hhh---
Q 009568          235 --PQPPFDQVRPALPALAQLVHS--NDEEVLTDACWALSYLSDG----TNDKIQAVIEAGVCPRLV--------ELL---  295 (532)
Q Consensus       235 --~~~~~~~~~~~l~~L~~lL~~--~d~~v~~~a~~~L~~l~~~----~~~~~~~~~~~~~l~~L~--------~lL---  295 (532)
                        ..........+++.+......  .+......++.++..++..    .......+.. .++..+.        ...   
T Consensus       551 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~  629 (888)
T d1qbkb_         551 GHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQ-RCVNLVQKTLAQAMLNNAQPD  629 (888)
T ss_dssp             GGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHH-HHHHHHHHHHHHHHHHHHCTT
T ss_pred             hccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHhcccc
Confidence              111122334455555554432  2222333445555554422    1111111111 1111111        111   


Q ss_pred             --CCCCccchhhHHHHHHHhhcCCcchhHHH-hhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 009568          296 --GHPSPSVLIPALRTVGNIVTGDDFQTQCI-ITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGL  372 (532)
Q Consensus       296 --~~~~~~v~~~al~~L~nl~~~~~~~~~~~-~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~  372 (532)
                        ...+..+...++.+++.++.+.......+ ....+++.+...+.+. ++.+|..|..+++.++..........++. +
T Consensus       630 ~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~-~~~vr~~a~~llgdl~~~~~~~~~~~l~~-~  707 (888)
T d1qbkb_         630 QYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDK-MPEVRQSSFALLGDLTKACFQHVKPCIAD-F  707 (888)
T ss_dssp             TSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCGGGTGGGHHH-H
T ss_pred             cccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHhhhHHHHHHHHH-H
Confidence              12345566777888888876444333333 3456888899999988 99999999999999987555544444433 6


Q ss_pred             HHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCC--HHHHHHHHHHHHHHHHhhhh
Q 009568          373 VGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPD--PRIVTVCLEGLENILKVGEA  447 (532)
Q Consensus       373 i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d--~~v~~~al~~L~~l~~~~~~  447 (532)
                      ++.+...+.+....++..|+|+++.++.....+...++-  .+++.|+..++.++  ..+...++.+|..+......
T Consensus       708 ~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~~--~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~  782 (888)
T d1qbkb_         708 MPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIP--MVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQ  782 (888)
T ss_dssp             HHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGSH--HHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHH
Confidence            777888888888899999999999998765444334322  36788888887654  45888999999998776554

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=7.1e-12  Score=135.43  Aligned_cols=380  Identities=13%  Similarity=0.126  Sum_probs=230.6

Q ss_pred             HHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHh
Q 009568           89 SLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKL  168 (532)
Q Consensus        89 ~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l  168 (532)
                      ..+..|..+|..+....+....     .-++|.+.+.+.+++ +..|..|+.+|+.++.+..+.....+. .+++.|+..
T Consensus       372 ~~r~~a~~~L~~l~~~~~~~il-----~~~l~~l~~~l~s~~-~~~reaa~~alg~i~eg~~~~~~~~l~-~li~~l~~~  444 (888)
T d1qbkb_         372 NLRKCSAAALDVLANVYRDELL-----PHILPLLKELLFHHE-WVVKESGILVLGAIAEGCMQGMIPYLP-ELIPHLIQC  444 (888)
T ss_dssp             SSHHHHHHHSTTTTTTCCSSSH-----HHHHHHHHHTTTSSS-HHHHHHHHHHHHHHTTTSHHHHTTTHH-HHHHHHHHH
T ss_pred             hHHHHHHHHHhhHhhhhHHHHH-----HHHHHHHHHhhccch-hHHHHHHHHHhhhhhhhHHHHhcccch-hhhHHHHHh
Confidence            3566666666655543211111     114566667777777 899999999999999866543322222 457888889


Q ss_pred             hCCCCHHHHHHHHHHHHHhhCCCc-hhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHH
Q 009568          169 LASPSDDVREQAVWALGNVAGDSP-RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP  247 (532)
Q Consensus       169 L~~~~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~  247 (532)
                      +.++++.+|..++|+|+.++.... ...+. .-...++.++..+ .+.++.++..++++|.+++......-......+++
T Consensus       445 l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~-~~~~~l~~ll~~l-~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~  522 (888)
T d1qbkb_         445 LSDKKALVRSITCWTLSRYAHWVVSQPPDT-YLKPLMTELLKRI-LDSNKRVQEAACSAFATLEEEACTELVPYLAYILD  522 (888)
T ss_dssp             TTSSCHHHHHHHHHHHHHTHHHHHSSCHHH-HTTTHHHHHHHHH-SSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHhhhhhhhh-hhhhhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence            999999999999999999874211 11111 1234577777777 56778999999999999997654444445677888


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhccCChhHH--HHHHHhCchHHHHHhhCC--CCccchhhHHHHHHHhhcCCcchhHH
Q 009568          248 ALAQLVHSNDEEVLTDACWALSYLSDGTNDKI--QAVIEAGVCPRLVELLGH--PSPSVLIPALRTVGNIVTGDDFQTQC  323 (532)
Q Consensus       248 ~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~--~~~~~~~~l~~L~~lL~~--~~~~v~~~al~~L~nl~~~~~~~~~~  323 (532)
                      .+...+...+......+..+++.++.......  ....+ .+++.+......  .+......++.+++.++.........
T Consensus       523 ~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~  601 (888)
T d1qbkb_         523 TLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQ-MLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLP  601 (888)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHH-HHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHH
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHH-HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhh
Confidence            88888888777776666666666653211000  11111 344555544432  23344556677777776433222111


Q ss_pred             Hhh---cCchHHHHHH--------hc----CCCchhHHHHHHHHHHHHhcCCHHHHHHHH-HcCCHHHHHHHHhcCchhH
Q 009568          324 IIT---YGALPYLLGL--------LT----HSHKKSIKKEACWTISNITAGNRDQIQAVI-DAGLVGPLVNLLQNAEFDI  387 (532)
Q Consensus       324 ~~~---~~~l~~L~~l--------L~----~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v  387 (532)
                      ...   ..++..+...        ..    ...+..+...++.+++.++.+-......++ ...+++.+...+.+.++.+
T Consensus       602 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~v  681 (888)
T d1qbkb_         602 YCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEV  681 (888)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHH
Confidence            111   0111111111        11    111445666677777777652222233444 4567888889999999999


Q ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHH
Q 009568          388 KKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEE  467 (532)
Q Consensus       388 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (532)
                      |..|..+++.++.........++-  .+++.+...|++++..++..+++++..+.......         ..+|...+  
T Consensus       682 r~~a~~llgdl~~~~~~~~~~~l~--~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~---------~~py~~~i--  748 (888)
T d1qbkb_         682 RQSSFALLGDLTKACFQHVKPCIA--DFMPILGTNLNPEFISVCNNATWAIGEISIQMGIE---------MQPYIPMV--  748 (888)
T ss_dssp             HHHHHHHHHHHHHHCGGGTGGGHH--HHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGG---------GGGGSHHH--
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHH--HHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHH---------hhhhHHHH--
Confidence            999999999887654433333322  26777888888888899999999999988765432         23344333  


Q ss_pred             hccHHHHHHHhcCC--CHHHHHHHHHHHH
Q 009568          468 AEGLEKIENLQSHD--NNEIYEKAVKILE  494 (532)
Q Consensus       468 ~g~~~~l~~L~~~~--~~~v~~~a~~il~  494 (532)
                         ++.|..+.+++  +..|.+-+...+.
T Consensus       749 ---l~~L~~il~~~~~~~~v~~n~~~~lg  774 (888)
T d1qbkb_         749 ---LHQLVEIINRPNTPKTLLENTAITIG  774 (888)
T ss_dssp             ---HHHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHcCCCccHHHHHHHHHHHH
Confidence               24444444432  3446555555544

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=8.8e-11  Score=107.81  Aligned_cols=253  Identities=15%  Similarity=0.115  Sum_probs=189.2

Q ss_pred             cHHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (532)
Q Consensus        75 ~l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  154 (532)
                      ..+.|++.|.++++.++..|+..|..+...            ..+|.|++++++++ +.++..|+++|+.+...... ..
T Consensus        20 ~~~~L~~~L~d~~~~vR~~A~~~L~~~~~~------------~~~~~l~~~l~d~~-~~vr~~a~~aL~~l~~~~~~-~~   85 (276)
T d1oyza_          20 NDDELFRLLDDHNSLKRISSARVLQLRGGQ------------DAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKKC-ED   85 (276)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHCCH------------HHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTTT-HH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHhhCCH------------hHHHHHHHHHcCCC-HHHHHHHHHHHHHhcccccc-cc
Confidence            457899999999999999999999887431            26899999999988 99999999999998753222 11


Q ss_pred             HHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCC
Q 009568          155 VVIDHGAVPIFVK-LLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG  233 (532)
Q Consensus       155 ~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~  233 (532)
                      .+     ++.+.. +++++++.++..++.+|++++...+.....     .++.+...+ .+.++.++..++.++..+.. 
T Consensus        86 ~~-----~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~-----~~~~l~~~~-~d~~~~vr~~a~~~l~~~~~-  153 (276)
T d1oyza_          86 NV-----FNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPK-----IVEQSQITA-FDKSTNVRRATAFAISVIND-  153 (276)
T ss_dssp             HH-----HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHHT-TCSCHHHHHHHHHHHHTC---
T ss_pred             ch-----HHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhHH-----HHHHHHHHh-cCcchHHHHHHHHHHhhcch-
Confidence            11     233444 567789999999999999997655433222     345555555 66778888888888877543 


Q ss_pred             CCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHh
Q 009568          234 KPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI  313 (532)
Q Consensus       234 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl  313 (532)
                               ...++.+..++...+..+...+..++..+......         ..+.+...+.+.+..++..+..+++.+
T Consensus       154 ---------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~al~~~  215 (276)
T d1oyza_         154 ---------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDKNEEVRIEAIIGLSYR  215 (276)
T ss_dssp             ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred             ---------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccc---------cchhhhhhhhhhhhhhhhhhccccchh
Confidence                     24567888889889999999888888877655442         345567778888888999999888765


Q ss_pred             hcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcC-chhHHHHHH
Q 009568          314 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA-EFDIKKEAA  392 (532)
Q Consensus       314 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~  392 (532)
                      ..           ...++.|+..+.++   .+|..++++|+.+.  ++         +.++.|..++... +.+++..|+
T Consensus       216 ~~-----------~~~~~~L~~~l~d~---~vr~~a~~aL~~ig--~~---------~~~~~L~~~l~~~~d~~vr~~A~  270 (276)
T d1oyza_         216 KD-----------KRVLSVLCDELKKN---TVYDDIIEAAGELG--DK---------TLLPVLDTMLYKFDDNEIITSAI  270 (276)
T ss_dssp             TC-----------GGGHHHHHHHHTSS---SCCHHHHHHHHHHC--CG---------GGHHHHHHHHTTSSCCHHHHHHH
T ss_pred             hh-----------hhhHHHHHHHhCCh---HHHHHHHHHHHHcC--CH---------HHHHHHHHHHccCCCHHHHHHHH
Confidence            42           24577888888744   58999999999884  32         3678888888764 788999998


Q ss_pred             HHHH
Q 009568          393 WAIS  396 (532)
Q Consensus       393 ~aL~  396 (532)
                      .+|.
T Consensus       271 ~~L~  274 (276)
T d1oyza_         271 DKLK  274 (276)
T ss_dssp             HHHT
T ss_pred             HHHc
Confidence            8764

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=6.3e-11  Score=108.79  Aligned_cols=256  Identities=14%  Similarity=0.127  Sum_probs=194.9

Q ss_pred             CCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH
Q 009568          116 SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR  195 (532)
Q Consensus       116 ~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~  195 (532)
                      ....+.|+++|++++ +.+|..|+.+|+.+..  +         .+++.|+.+++++++.++..|+++|+.+...... .
T Consensus        18 ~~~~~~L~~~L~d~~-~~vR~~A~~~L~~~~~--~---------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~-~   84 (276)
T d1oyza_          18 KLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC-E   84 (276)
T ss_dssp             TSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT-H
T ss_pred             cCCHHHHHHHhcCCC-HHHHHHHHHHHHhhCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc-c
Confidence            345678899999988 9999999999998764  2         2479999999999999999999999998543322 1


Q ss_pred             HHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCC
Q 009568          196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT  275 (532)
Q Consensus       196 ~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~  275 (532)
                      +.     .++.+...+..+.++.++..++.+|..++...+    ......++.+...+.+.++.++..++.+++.+..  
T Consensus        85 ~~-----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~--  153 (276)
T d1oyza_          85 DN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--  153 (276)
T ss_dssp             HH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----
T ss_pred             cc-----hHHHHHHHHhcCCChhHHHHHHHHHHHHccccc----hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch--
Confidence            22     244566665578899999999999999886532    2234567788888888899999989888876532  


Q ss_pred             hhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHH
Q 009568          276 NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN  355 (532)
Q Consensus       276 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n  355 (532)
                               ...++.+..++.+.++.++..+..+++.+.....         ...+.+...+.+. +..++..+.++++.
T Consensus       154 ---------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~-~~~~~~~~~~al~~  214 (276)
T d1oyza_         154 ---------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAIIGLSY  214 (276)
T ss_dssp             ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHhcccccchhhhhHHHHHHhhhcccc---------ccchhhhhhhhhh-hhhhhhhhccccch
Confidence                     2567788888999888899888888888776543         2344567777777 88999999999887


Q ss_pred             HhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCC-CCHHHHHHH
Q 009568          356 ITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC-PDPRIVTVC  434 (532)
Q Consensus       356 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~-~d~~v~~~a  434 (532)
                      +..           ...++.|+..+.+  +.+|..++++|+.+..   +         +.++.|..+|.. +|.+++..|
T Consensus       215 ~~~-----------~~~~~~L~~~l~d--~~vr~~a~~aL~~ig~---~---------~~~~~L~~~l~~~~d~~vr~~A  269 (276)
T d1oyza_         215 RKD-----------KRVLSVLCDELKK--NTVYDDIIEAAGELGD---K---------TLLPVLDTMLYKFDDNEIITSA  269 (276)
T ss_dssp             TTC-----------GGGHHHHHHHHTS--SSCCHHHHHHHHHHCC---G---------GGHHHHHHHHTTSSCCHHHHHH
T ss_pred             hhh-----------hhhHHHHHHHhCC--hHHHHHHHHHHHHcCC---H---------HHHHHHHHHHccCCCHHHHHHH
Confidence            642           2257788888864  4689999999998842   1         367888887765 578899998


Q ss_pred             HHHHH
Q 009568          435 LEGLE  439 (532)
Q Consensus       435 l~~L~  439 (532)
                      +++|.
T Consensus       270 ~~~L~  274 (276)
T d1oyza_         270 IDKLK  274 (276)
T ss_dssp             HHHHT
T ss_pred             HHHHc
Confidence            88764

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=4e-10  Score=111.03  Aligned_cols=391  Identities=12%  Similarity=0.070  Sum_probs=247.2

Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCChhhH-
Q 009568           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-YPQLQFEAAWALTNIASGTSENT-  153 (532)
Q Consensus        76 l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~-~~~~~~~a~~~L~~l~~~~~~~~-  153 (532)
                      +-.+++.+.|+|.+.+.+|-..|..+...  +++       +.++.|...+.+++ ...+|..|+-.|.+......... 
T Consensus         2 l~~il~~~~s~d~~~r~~A~~~L~~~~~~--~~~-------~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~   72 (458)
T d1ibrb_           2 LITILEKTVSPDRLELEAAQKFLERAAVE--NLP-------TFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK   72 (458)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHH--HHH-------HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred             HHHHHHHHhCcCHHHHHHHHHHHHHHHhc--Cch-------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhh
Confidence            34567778899999999999999998763  111       25677888776543 36789889888888765332211 


Q ss_pred             HHH----------HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhh-hhhhHHHHH
Q 009568          154 KVV----------IDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE-RAKLSMLRN  222 (532)
Q Consensus       154 ~~i----------~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~~~~~  222 (532)
                      ...          ....+.+.++..+.+++.. +..++.+++.++......   -.-.+.++.++..+.. ..+...+..
T Consensus        73 ~~~~~~~~~l~~~~~~~i~~~ll~~~~~~~~~-~~~~~~~~~~i~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~  148 (458)
T d1ibrb_          73 AQYQQRWLAIDANARREVKNYVLQTLGTETYR-PSSASQCVAGIACAEIPV---NQWPELIPQLVANVTNPNSTEHMKES  148 (458)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSS-SCSHHHHHHHHHHHHGGG---TCCTTHHHHHHHHHHCTTCCHHHHHH
T ss_pred             hHHhhhhccCCHHHHHHHHHHHHhccCCCcHH-HHHHHHHHHHHHHHhCCc---ccCcchhHHHHHHHHhhcchHHHHHH
Confidence            111          0112345566666665443 334445555554211000   0012356677776642 235567778


Q ss_pred             HHHHhhhccCCC-CCCCcccccchHHHHHHhhcCC--CHHHHHHHHHHHHHhccCChhHHH-HHHHhCchHHHHHhhCCC
Q 009568          223 ATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSN--DEEVLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLGHP  298 (532)
Q Consensus       223 a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~l~~L~~lL~~~  298 (532)
                      ++.++..++... +.........+++.+...+.++  +..++..++.++.++......... ......+.+.+...+.++
T Consensus       149 ~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  228 (458)
T d1ibrb_         149 TLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP  228 (458)
T ss_dssp             HHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCC
Confidence            888888887654 2333334566788888888754  567999999999988865443211 122334566777888889


Q ss_pred             CccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHH------------
Q 009568          299 SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQA------------  366 (532)
Q Consensus       299 ~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~------------  366 (532)
                      ++.++..++.+++.++...+......+.....+.+...+.+. ++.++..|+..+..++.........            
T Consensus       229 ~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~  307 (458)
T d1ibrb_         229 DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPE  307 (458)
T ss_dssp             SHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSS
T ss_pred             CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHH
Confidence            999999999999999876654333233334445556666777 8889999999998886421111100            


Q ss_pred             --------HHHcCCHHHHHHHHhc-------CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHH
Q 009568          367 --------VIDAGLVGPLVNLLQN-------AEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIV  431 (532)
Q Consensus       367 --------l~~~~~i~~L~~ll~~-------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~  431 (532)
                              ..-..+++.+...+..       .+..++..|..++..++.....+....     +++.+...+.++++.++
T Consensus       308 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-----l~~~i~~~l~s~~~~~r  382 (458)
T d1ibrb_         308 HTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPH-----VLPFIKEHIKNPDWRYR  382 (458)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHH-----HHHHHHHHTTCSSHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhhH-----HHHHHHHHhcCCCHHHH
Confidence                    0011133444444432       234588889988888876444333333     56778888999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009568          432 TVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL  498 (532)
Q Consensus       432 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~  498 (532)
                      ..++.+|..+........        ..++.     ...++.|..+.+++++.|+..|.+.+.++.+
T Consensus       383 ~aal~~l~~i~~~~~~~~--------~~~~l-----~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~  436 (458)
T d1ibrb_         383 DAAVMAFGCILEGPEPSQ--------LKPLV-----IQAMPTLIELMKDPSVVVRDTAAWTVGRICE  436 (458)
T ss_dssp             HHHHHHHHHTSSSSCTTT--------TCTTT-----TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHhH--------HHHHH-----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            999999988875322110        11111     2245677778899999999999999988753

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.2e-10  Score=114.94  Aligned_cols=361  Identities=14%  Similarity=0.079  Sum_probs=224.7

Q ss_pred             cHHHHHhhhcCC--ChHHHHHHHHHHHHHhcCCCCCchhH-----------hhhCCcHHHHHHhhcCCCCHHHHHHHHHH
Q 009568           75 SLPAMVAGVWSD--DSSLQLEATTQFRKLLSIERSPPIEE-----------VIQSGVVPRFVEFLMREDYPQLQFEAAWA  141 (532)
Q Consensus        75 ~l~~lv~~L~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~-----------~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~  141 (532)
                      -+..+...+.++  +..+|..|+..|++.+... .+....           -....+.+.+++.+.+++ +. +..++.+
T Consensus        35 ~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~-~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~~~~~~-~~-~~~~~~~  111 (458)
T d1ibrb_          35 FLVELSRVLANPGNSQVARVAAGLQIKNSLTSK-DPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YR-PSSASQC  111 (458)
T ss_dssp             HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SS-SCSHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcc-CchhhhHHhhhhccCCHHHHHHHHHHHHhccCCCc-HH-HHHHHHH
Confidence            345666666543  4678889999999888753 211111           122345566777777765 33 3345555


Q ss_pred             HHHHhcCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhh-hhhhH
Q 009568          142 LTNIASGTSENTKVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE-RAKLS  218 (532)
Q Consensus       142 L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~  218 (532)
                      +..++...  ... -.-.+.++.++..+.+  .+..++..++.++..++.........-....+++.++..+.. +.+..
T Consensus       112 ~~~i~~~~--~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~  188 (458)
T d1ibrb_         112 VAGIACAE--IPV-NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNN  188 (458)
T ss_dssp             HHHHHHHH--GGG-TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHH
T ss_pred             HHHHHHHh--CCc-ccCcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHH
Confidence            55555410  000 0012567888887765  557788889999988874332211111112245666666643 23577


Q ss_pred             HHHHHHHHhhhccCCCC--CCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhC
Q 009568          219 MLRNATWTLSNFCRGKP--QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG  296 (532)
Q Consensus       219 ~~~~a~~~L~~L~~~~~--~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~  296 (532)
                      ++..++.++..+.....  ...........+.+..++.+++++++..++.++..++...+......+...+.+.+...+.
T Consensus       189 v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~  268 (458)
T d1ibrb_         189 VKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK  268 (458)
T ss_dssp             HHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence            89999999998887641  1122223456677788888899999999999999988655443322222233444555667


Q ss_pred             CCCccchhhHHHHHHHhhcCCcchh--------------------HHHhhcCchHHHHHHhcCC------CchhHHHHHH
Q 009568          297 HPSPSVLIPALRTVGNIVTGDDFQT--------------------QCIITYGALPYLLGLLTHS------HKKSIKKEAC  350 (532)
Q Consensus       297 ~~~~~v~~~al~~L~nl~~~~~~~~--------------------~~~~~~~~l~~L~~lL~~~------~~~~v~~~a~  350 (532)
                      +.+..++..++..+..++.......                    .......+.+.+...+.+.      .+..++..|.
T Consensus       269 ~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~  348 (458)
T d1ibrb_         269 SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAG  348 (458)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHH
Confidence            7788888889988888864211100                    0001112344455554321      1346888899


Q ss_pred             HHHHHHhcCCH-HHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHH
Q 009568          351 WTISNITAGNR-DQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPR  429 (532)
Q Consensus       351 ~~L~nl~~~~~-~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~  429 (532)
                      .++..++...+ .....     +++.+...+.++++.+|..|+.+|+.++.+...+..... -..+++.++.+++++++.
T Consensus       349 ~~l~~l~~~~~~~~~~~-----l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~-l~~i~~~l~~~l~d~~~~  422 (458)
T d1ibrb_         349 VCLMLLATCCEDDIVPH-----VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVV  422 (458)
T ss_dssp             HHHHHHHHHTTTTHHHH-----HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCHH
T ss_pred             HHHHHHHHhccHhhhhH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHH-HHHHHHHHHHHhCCCCHH
Confidence            99998876222 22221     456777888888999999999999999875432221111 124688999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhh
Q 009568          430 IVTVCLEGLENILKVGEA  447 (532)
Q Consensus       430 v~~~al~~L~~l~~~~~~  447 (532)
                      |+..|+++|..+......
T Consensus       423 VR~~a~~~l~~i~~~~~~  440 (458)
T d1ibrb_         423 VRDTAAWTVGRICELLPE  440 (458)
T ss_dssp             HHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHHhhc
Confidence            999999999999876543

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.1e-09  Score=121.78  Aligned_cols=398  Identities=11%  Similarity=0.103  Sum_probs=239.7

Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHHhcCCCC----CchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChh
Q 009568           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERS----PPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE  151 (532)
Q Consensus        76 l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~----~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~  151 (532)
                      ++.|+..+.+++...+..+..+|+.+...-..    ......+...+++.+...+....++.++..|+.+|..+......
T Consensus        85 ~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~  164 (1207)
T d1u6gc_          85 VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG  164 (1207)
T ss_dssp             HHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhH
Confidence            34444444445555555555555544432100    11111122234555666566555588999999999988652211


Q ss_pred             hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhcc
Q 009568          152 NTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFC  231 (532)
Q Consensus       152 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~  231 (532)
                      ..... ...+++.|+..+.+++..+|..|+.+|+.++...+..   . -...+..++..+..+.+...++.++.++..++
T Consensus       165 ~l~~~-~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~---~-~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~  239 (1207)
T d1u6gc_         165 LLVNF-HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAIS  239 (1207)
T ss_dssp             SCTTT-HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHH
T ss_pred             hhHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH---H-HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence            10000 0124577788888899999999999999998654321   1 12346777777755666667777888888888


Q ss_pred             CCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHh-----------------
Q 009568          232 RGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL-----------------  294 (532)
Q Consensus       232 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l-----------------  294 (532)
                      +..+..-......++|.+...+..++++++..++.++..++...+........ .+++.+...                 
T Consensus       240 ~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~ii~~~l~~l~~dp~~~~~~~~~~~~  318 (1207)
T d1u6gc_         240 RQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNYNYDDEDEDEN  318 (1207)
T ss_dssp             HHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC-------------
T ss_pred             HHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHH-HHHHHHHHHHhcCcchhhhhHHHHHh
Confidence            76544333456789999999999999999999999988877543322111110 111111111                 


Q ss_pred             --------------------hCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHH
Q 009568          295 --------------------LGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTIS  354 (532)
Q Consensus       295 --------------------L~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~  354 (532)
                                          ..+..+.++..++.+|+.++...+........ .+++.++..+.+. ++.+|..+..++.
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~-~~~~~L~~~l~d~-~~~vr~~~~~~l~  396 (1207)
T d1u6gc_         319 AMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYK-TVSPALISRFKER-EENVKADVFHAYL  396 (1207)
T ss_dssp             -----------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHT-TTHHHHHSTTSCS-SSHHHHHHHHHHH
T ss_pred             hhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhcCC-chHHHHHHHHHHH
Confidence                                22345678999999999998876655444433 6889999999888 8899999999888


Q ss_pred             HHhcC--C-HH-------------HHHHHHH--cCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCCh
Q 009568          355 NITAG--N-RD-------------QIQAVID--AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCI  416 (532)
Q Consensus       355 nl~~~--~-~~-------------~~~~l~~--~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l  416 (532)
                      .+...  . ..             ....+.+  ..+++.+...+.+.+..++..+..++..++.........++.  .++
T Consensus       397 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~--~~~  474 (1207)
T d1u6gc_         397 SLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIP--VLV  474 (1207)
T ss_dssp             HHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHH--HHH
T ss_pred             HHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHhhH--hhH
Confidence            77531  0 00             0001111  235666777778888999999999998886532211112211  145


Q ss_pred             HHHHhhcCCC--CHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHH
Q 009568          417 KPLCDLFVCP--DPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILE  494 (532)
Q Consensus       417 ~~L~~lL~~~--d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~  494 (532)
                      +.+...+...  ...++..++.++..++......        ...++..     .....+.....++.+.+...|...+.
T Consensus       475 ~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~~--------~~~~~~~-----~l~~~~~~~~~~~~~~i~~~al~~~~  541 (1207)
T d1u6gc_         475 PGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQ--------VFHPHVQ-----ALVPPVVACVGDPFYKITSEALLVTQ  541 (1207)
T ss_dssp             HHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGG--------GGHHHHT-----TTHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccchhHHHHHHHHHHHHHHHhccHH--------HHHHHHH-----hhhhhHHHHHccccHHHHHHHHHHHH
Confidence            5666666643  4567778888888887654322        1222222     22345555666777777776666554


Q ss_pred             Hh
Q 009568          495 TY  496 (532)
Q Consensus       495 ~~  496 (532)
                      .+
T Consensus       542 ~l  543 (1207)
T d1u6gc_         542 QL  543 (1207)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.12  E-value=5.2e-10  Score=119.46  Aligned_cols=394  Identities=12%  Similarity=0.154  Sum_probs=228.2

Q ss_pred             HHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 009568           79 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID  158 (532)
Q Consensus        79 lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~  158 (532)
                      +...+.+.++..+..|+..+..+.... ......-.-..+++.+++.+.+++ +.++..++|+++.++.....   .+..
T Consensus       374 ~~~~~~~~~~~~~~~a~~~l~~i~~~~-~~~~~~~~l~~~l~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~---~~~~  448 (861)
T d2bpta1         374 VEQNITADNWRNREAAVMAFGSIMDGP-DKVQRTYYVHQALPSILNLMNDQS-LQVKETTAWCIGRIADSVAE---SIDP  448 (861)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHTSSSS-CHHHHHHHHHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGG---GSCT
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHhcCcc-hhhhhHHHHHHHHHHHHhch---hhhh
Confidence            334556788888999999998887643 222212222347899999999988 99999999999998762111   1112


Q ss_pred             CCChHHHHHhhC---CCCHHHHHHHHHHHHHhhCC----Cc-hhHHHHHhcCChHHHHHHhh-hhhhhHHHHHHHHHhhh
Q 009568          159 HGAVPIFVKLLA---SPSDDVREQAVWALGNVAGD----SP-RCRDLVLSQGALIPLLAQLN-ERAKLSMLRNATWTLSN  229 (532)
Q Consensus       159 ~g~i~~L~~lL~---~~~~~v~~~a~~~L~nl~~~----~~-~~~~~~~~~~~l~~L~~ll~-~~~~~~~~~~a~~~L~~  229 (532)
                      ...++.++..+.   ..++.++..+++++..++..    .. ......  ...+..++.... ...+..++..+..++..
T Consensus       449 ~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~al~~  526 (861)
T d2bpta1         449 QQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALTT  526 (861)
T ss_dssp             TTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHHH
T ss_pred             HHhhhhhhHHHHhccccChHHHHHHHHHHHHHHHHhhhcccchhhHHH--hhHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence            233444444321   25678888888888877531    11 111111  112334444432 23356677788888887


Q ss_pred             ccCCCCCCCcccccchHHHHHHhh----cCCC-----------HHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHh
Q 009568          230 FCRGKPQPPFDQVRPALPALAQLV----HSND-----------EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL  294 (532)
Q Consensus       230 L~~~~~~~~~~~~~~~l~~L~~lL----~~~d-----------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l  294 (532)
                      +....+.........+.+.+...+    ....           ..++..++.++..+............ ..+++.+...
T Consensus       527 ~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~-~~l~~~l~~~  605 (861)
T d2bpta1         527 MVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFRL  605 (861)
T ss_dssp             HHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHHH-HHHHHHHhhh
Confidence            776543322222233333333333    2111           12334444444444332222111111 1345556666


Q ss_pred             hCC-CCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCH
Q 009568          295 LGH-PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLV  373 (532)
Q Consensus       295 L~~-~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i  373 (532)
                      +.. ++..++..++.+++.++..........+. .++|.+...+.+. ++.++..|+.+++.++....+....... .++
T Consensus       606 l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~-~i~p~l~~~l~~~-~~~v~~~a~~~l~~i~~~~~~~~~~~~~-~i~  682 (861)
T d2bpta1         606 LEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYSD-AMM  682 (861)
T ss_dssp             HHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHHH-HHH
T ss_pred             cccCCchhHHHHHHHHHHHHHHHhhHHHHHHHH-HHhhHHHHHhCCC-CHHHHHHHHHHHHHHHHHhHHHhHhhHH-HHH
Confidence            644 45678889999999998755444433333 5788999999988 8899999999999998754444444443 267


Q ss_pred             HHHHHHHhcC--chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCC----CH-------HHHHHHHHHHHH
Q 009568          374 GPLVNLLQNA--EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCP----DP-------RIVTVCLEGLEN  440 (532)
Q Consensus       374 ~~L~~ll~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~----d~-------~v~~~al~~L~~  440 (532)
                      +.|+..+.+.  +..++..++.+|+.++........+++-.  +++.+...+...    +.       .++..+++++..
T Consensus       683 ~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~~~~~~l~~--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  760 (861)
T d2bpta1         683 NVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLND--IMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVG  760 (861)
T ss_dssp             HHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHH--HHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhCcCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence            8888888765  56889999999999886443344444332  455555555432    21       356777777777


Q ss_pred             HHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHH----hcCCCHHHHHHHHHHHHHh
Q 009568          441 ILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENL----QSHDNNEIYEKAVKILETY  496 (532)
Q Consensus       441 l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L----~~~~~~~v~~~a~~il~~~  496 (532)
                      ++........      ...+|...+.     +.+..+    ..+.+.++...|..+|..+
T Consensus       761 i~~~~~~~~~------~~~p~~~~i~-----~~i~~~~~~~~~~~~~~~~~~~~~~i~~l  809 (861)
T d2bpta1         761 IVAGLHDKPE------ALFPYVGTIF-----QFIAQVAEDPQLYSEDATSRAAVGLIGDI  809 (861)
T ss_dssp             HHHHTTTCHH------HHGGGHHHHH-----HHHHHHHHCHHHHTSHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCHH------HHHHHHHHHH-----HHHHHHHhCCccCCCHHHHHHHHHHHHHH
Confidence            7653322111      2333444332     223333    2346677777777776543

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.09  E-value=3.6e-08  Score=104.85  Aligned_cols=390  Identities=13%  Similarity=0.087  Sum_probs=240.7

Q ss_pred             HHHHH-hhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCChhhH
Q 009568           76 LPAMV-AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-YPQLQFEAAWALTNIASGTSENT  153 (532)
Q Consensus        76 l~~lv-~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~-~~~~~~~a~~~L~~l~~~~~~~~  153 (532)
                      +..++ ..+.|+|+.++.+|-..|.++...  ++       .+.++.|.+.+.+.+ ++.+|..|+-.|.|.........
T Consensus         6 ~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~--~~-------~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~   76 (861)
T d2bpta1           6 FAQLLENSILSPDQNIRLTSETQLKKLSND--NF-------LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVK   76 (861)
T ss_dssp             HHHHHHHHHHCSSHHHHHHHHHHHHHHHHH--CH-------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhc--Cc-------hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchh
Confidence            34444 446799999999999999888653  11       136777888886543 36889999888888765332111


Q ss_pred             HHH--------H----hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHHHhhhhhhhHHH
Q 009568          154 KVV--------I----DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNERAKLSML  220 (532)
Q Consensus       154 ~~i--------~----~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~~~~  220 (532)
                      ...        +    ...+-..++..+.++++.++..++.+++.++... +..+-    ...++.|+..+..+.+..++
T Consensus        77 ~~~~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~w----peli~~L~~~~~s~~~~~~~  152 (861)
T d2bpta1          77 TQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAW----PELMKIMVDNTGAEQPENVK  152 (861)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCC----HHHHHHHHHHTSTTSCHHHH
T ss_pred             hhhHHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCch----HHHHHHHHHHhcCCCcHHHH
Confidence            100        0    0112356677788889999999999999986421 11000    01355566666444456677


Q ss_pred             HHHHHHhhhccCCCCCCCcccc---cchHHHHHHhhc--CCCHHHHHHHHHHHHHhccCChhHHH-HHHHhCchHHHHHh
Q 009568          221 RNATWTLSNFCRGKPQPPFDQV---RPALPALAQLVH--SNDEEVLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVEL  294 (532)
Q Consensus       221 ~~a~~~L~~L~~~~~~~~~~~~---~~~l~~L~~lL~--~~d~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~l~~L~~l  294 (532)
                      ..++.+|..++...........   ..+++.+...+.  ..+..++..++.++.++......... ......+++.+...
T Consensus       153 ~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  232 (861)
T d2bpta1         153 RASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEA  232 (861)
T ss_dssp             HHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHH
Confidence            7888999999876432222222   334444444443  34678999999999988765433211 11223466778888


Q ss_pred             hCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH-----
Q 009568          295 LGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID-----  369 (532)
Q Consensus       295 L~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-----  369 (532)
                      +.++++.++..++.++..++...+......+..-+...+.....+. ++.++..++..+..++............     
T Consensus       233 ~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  311 (861)
T d2bpta1         233 TQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSP-NDKVASMTVEFWSTICEEEIDIAYELAQFPQSP  311 (861)
T ss_dssp             HTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCS
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence            8999999999999999999875554333333322333344455555 8899999998888876422111111111     


Q ss_pred             -----------cCCHHHHHHHHhcC-------chhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHH
Q 009568          370 -----------AGLVGPLVNLLQNA-------EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIV  431 (532)
Q Consensus       370 -----------~~~i~~L~~ll~~~-------~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~  431 (532)
                                 ..+++.+...+...       +...+..+..++..++..........     ..+.+...+.+.++..+
T Consensus       312 ~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~  386 (861)
T d2bpta1         312 LQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEP-----VLEFVEQNITADNWRNR  386 (861)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHH-----HHHHHHHHTTCSSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhh-----hcchhhhhhhhHHHHHH
Confidence                       12355555555432       33567777777776654322222222     24455666778899999


Q ss_pred             HHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009568          432 TVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW  497 (532)
Q Consensus       432 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~  497 (532)
                      ..++.++..+........        ..++..     ..++.+..+..++++.|+..|.+.+.++.
T Consensus       387 ~~a~~~l~~i~~~~~~~~--------~~~~l~-----~~l~~l~~~l~d~~~~vr~~a~~~l~~l~  439 (861)
T d2bpta1         387 EAAVMAFGSIMDGPDKVQ--------RTYYVH-----QALPSILNLMNDQSLQVKETTAWCIGRIA  439 (861)
T ss_dssp             HHHHHHHHHTSSSSCHHH--------HHHHHH-----HHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcchhh--------HHHHHH-----HHHHHHHHHhcCcchhhhhHHHHHHHHHH
Confidence            999998888765432211        111222     23567777888999999999998887654

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=1e-07  Score=101.47  Aligned_cols=397  Identities=14%  Similarity=0.101  Sum_probs=244.1

Q ss_pred             cHHHHHhhhcC--CChHHHHHHHHHHHHHhcCCCCCc-----------hhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHH
Q 009568           75 SLPAMVAGVWS--DDSSLQLEATTQFRKLLSIERSPP-----------IEEVIQSGVVPRFVEFLMREDYPQLQFEAAWA  141 (532)
Q Consensus        75 ~l~~lv~~L~s--~~~~~~~~a~~~l~~l~~~~~~~~-----------~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~  141 (532)
                      -+..+.+.+.+  .+..+|..|+..|++.+... ...           ...-....+...+++.+.+++  .++..++.+
T Consensus        36 f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~-~~~~~~~~~~~~~~i~~~~k~~ik~~ll~~l~~~~--~~~~~~a~~  112 (876)
T d1qgra_          36 FLVELSRVLANPGNSQVARVAAGLQIKNSLTSK-DPDIKAQYQQRWLAIDANARREVKNYVLHTLGTET--YRPSSASQC  112 (876)
T ss_dssp             HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCC--SSSCHHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcc-ccchhhhhhcccccCCHHHHHHHHHHHHHHhcCCc--HHHHHHHHH
Confidence            34555555543  34678999999999988642 111           111122335567778887765  345567788


Q ss_pred             HHHHhcCChhhHHHHHh--CCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhhh-hh
Q 009568          142 LTNIASGTSENTKVVID--HGAVPIFVKLLASP--SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNER-AK  216 (532)
Q Consensus       142 L~~l~~~~~~~~~~i~~--~g~i~~L~~lL~~~--~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~  216 (532)
                      ++.++..  +..   .+  .++++.|++.+.++  ...++..++.+|..++.+.......-....+++.++..+... .+
T Consensus       113 i~~i~~~--~~p---~~~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~  187 (876)
T d1qgra_         113 VAGIACA--EIP---VNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPS  187 (876)
T ss_dssp             HHHHHHH--HGG---GTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSC
T ss_pred             HHHHHHH--HCC---ccccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCcc
Confidence            8888752  100   01  25678888887653  477889999999998753221110001122456666666432 35


Q ss_pred             hHHHHHHHHHhhhccCCCC--CCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHh
Q 009568          217 LSMLRNATWTLSNFCRGKP--QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL  294 (532)
Q Consensus       217 ~~~~~~a~~~L~~L~~~~~--~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l  294 (532)
                      ..++..++.++.++.....  .........+++.+...+.+++++++..++.++..++...++.....+...+.+.+...
T Consensus       188 ~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~  267 (876)
T d1qgra_         188 NNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEA  267 (876)
T ss_dssp             HHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            6788888888877665431  11112223456677788888999999999999999987666555555555566667777


Q ss_pred             hCCCCccchhhHHHHHHHhhcCCcchh--------------------HHHhhcCchHHHHHHhcCC------CchhHHHH
Q 009568          295 LGHPSPSVLIPALRTVGNIVTGDDFQT--------------------QCIITYGALPYLLGLLTHS------HKKSIKKE  348 (532)
Q Consensus       295 L~~~~~~v~~~al~~L~nl~~~~~~~~--------------------~~~~~~~~l~~L~~lL~~~------~~~~v~~~  348 (532)
                      +.+.+..++..++..+..++.......                    .......+++.+...+...      ....++..
T Consensus       268 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  347 (876)
T d1qgra_         268 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKA  347 (876)
T ss_dssp             HTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHH
T ss_pred             hccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHH
Confidence            788888888888888777764211110                    0011112344444444322      13357888


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCH
Q 009568          349 ACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDP  428 (532)
Q Consensus       349 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~  428 (532)
                      |..++..++...+..   ++. .+++.+...+.+.+...+..++.+++.+..+........... .+++.+...+.++++
T Consensus       348 a~~~l~~l~~~~~~~---~~~-~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~l~d~~~  422 (876)
T d1qgra_         348 AGVCLMLLATCCEDD---IVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVI-QAMPTLIELMKDPSV  422 (876)
T ss_dssp             HHHHHHHHHHHHGGG---GHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHHHTCSSH
T ss_pred             HHHHHHHHHHHhhhh---hhh-hhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHH-HHHHHHHHhhcCCcc
Confidence            888888776522211   111 134556666677888999999999999988766554443332 478889999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009568          429 RIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW  497 (532)
Q Consensus       429 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~  497 (532)
                      .++..+++++..++........       ...+...+     +..+.... ++++.+...+.+.+..+.
T Consensus       423 ~vr~~a~~~l~~~~~~~~~~~~-------~~~~~~~~-----~~~l~~~l-~~~~~v~~~~~~~l~~l~  478 (876)
T d1qgra_         423 VVRDTAAWTVGRICELLPEAAI-------NDVYLAPL-----LQCLIEGL-SAEPRVASNVCWAFSSLA  478 (876)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGTS-------STTTHHHH-----HHHHHHHT-TSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcchhhh-------hHHHhhhH-----HHHHHHHh-cCCHHHHHHHHHHHHHHH
Confidence            9999999999999876543221       11111111     23333322 457888888887776654

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.8e-07  Score=99.53  Aligned_cols=390  Identities=13%  Similarity=0.075  Sum_probs=244.8

Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCChhhH-
Q 009568           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-YPQLQFEAAWALTNIASGTSENT-  153 (532)
Q Consensus        76 l~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~-~~~~~~~a~~~L~~l~~~~~~~~-  153 (532)
                      +-.+++...|+|.+.+..|-..|..+...  ++       .|.+..|.+.+.+.+ +..+|..|+-.|.|......... 
T Consensus         3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~--~~-------~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~   73 (876)
T d1qgra_           3 LITILEKTVSPDRLELEAAQKFLERAAVE--NL-------PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK   73 (876)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHHHH--HH-------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred             HHHHHHHHhCcCHHHHHHHHHHHHHHHhc--Ch-------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchh
Confidence            45667777799999999999999888653  11       246777888776543 36799999999988764221111 


Q ss_pred             HH----------HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHHHhhhh-hhhHHHH
Q 009568          154 KV----------VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNER-AKLSMLR  221 (532)
Q Consensus       154 ~~----------i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~~~l~~L~~ll~~~-~~~~~~~  221 (532)
                      ..          -....+-..++..+.+++. ++..++.+++.++... |..+    =.+.++.|+..+..+ ....++.
T Consensus        74 ~~~~~~~~~i~~~~k~~ik~~ll~~l~~~~~-~~~~~a~~i~~i~~~~~p~~~----Wpeli~~L~~~l~~~~~~~~~~~  148 (876)
T d1qgra_          74 AQYQQRWLAIDANARREVKNYVLHTLGTETY-RPSSASQCVAGIACAEIPVNQ----WPELIPQLVANVTNPNSTEHMKE  148 (876)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHTTTCCS-SSCHHHHHHHHHHHHHGGGTC----CTTHHHHHHHHHHCTTCCHHHHH
T ss_pred             hhhhcccccCCHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHCCccc----cHHHHHHHHHHhcCCCCcHHHHH
Confidence            10          0011233667777777554 4556777888876321 1000    013567777777432 2456777


Q ss_pred             HHHHHhhhccCCC-CCCCcccccchHHHHHHhhcCC--CHHHHHHHHHHHHHhccCChhHHH-HHHHhCchHHHHHhhCC
Q 009568          222 NATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSN--DEEVLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLGH  297 (532)
Q Consensus       222 ~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~l~~L~~lL~~  297 (532)
                      .++.+|..++..- +.........+++.++..+.++  +..++..++.++.+.......... .....-+++.+...+.+
T Consensus       149 ~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~  228 (876)
T d1qgra_         149 STLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC  228 (876)
T ss_dssp             HHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcC
Confidence            8889998887643 1111233456778888888654  467888899888877654332211 11222356677788888


Q ss_pred             CCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHH-----------
Q 009568          298 PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQA-----------  366 (532)
Q Consensus       298 ~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~-----------  366 (532)
                      +++.++..++.++..++...+......+...+.+.+...+.+. .+.++..++..+..++.........           
T Consensus       229 ~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  307 (876)
T d1qgra_         229 PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPP  307 (876)
T ss_dssp             SSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred             CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhH
Confidence            9999999999999999987665555555556667777777777 8888888888877776421111110           


Q ss_pred             ---------HHHcCCHHHHHHHHhc-------CchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHH
Q 009568          367 ---------VIDAGLVGPLVNLLQN-------AEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRI  430 (532)
Q Consensus       367 ---------l~~~~~i~~L~~ll~~-------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v  430 (532)
                               .....+++.+...+..       .+..++..|..++..++..........     +++.+...+.++++..
T Consensus       308 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-----~~~~i~~~l~~~~~~~  382 (876)
T d1qgra_         308 EHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPH-----VLPFIKEHIKNPDWRY  382 (876)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHH-----HHHHHHHHTTCSSHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhhhhh-----hHHHHHHhhccchHHH
Confidence                     0111233444444432       133577888888877765322222222     4566777888899999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009568          431 VTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL  498 (532)
Q Consensus       431 ~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~  498 (532)
                      +..++.++..+.......           .....+  ...+..+.....++++.|+..|.+.+.++..
T Consensus       383 r~~~~~~l~~~~~~~~~~-----------~~~~~~--~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~  437 (876)
T d1qgra_         383 RDAAVMAFGCILEGPEPS-----------QLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICE  437 (876)
T ss_dssp             HHHHHHHHHHTSSSSCHH-----------HHHHHH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhhhHH-----------HHHHHH--HHHHHHHHHhhcCCccHHHHHHHHHHHHHHH
Confidence            988888877665432111           011111  2235677777889999999999999887754

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.61  E-value=3.3e-06  Score=79.89  Aligned_cols=352  Identities=11%  Similarity=0.097  Sum_probs=198.4

Q ss_pred             CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhH---HHHHhCC--ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 009568          117 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT---KVVIDHG--AVPIFVKLLASPSDDVREQAVWALGNVAGDS  191 (532)
Q Consensus       117 g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~---~~i~~~g--~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~  191 (532)
                      ..+..++.+|.....+++....+..+..+...++...   ..+.+..  .-+.+..++..++.-+...+...+..++..+
T Consensus        74 ~~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll~~~~  153 (477)
T d1ho8a_          74 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG  153 (477)
T ss_dssp             TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhccCchhHHHHHHHHHHHHHHhcc
Confidence            3577778888765557777777777777665443221   1121211  2244555666666667777777888887655


Q ss_pred             chhHHHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcc--cccchHHHHHHhhcC--------------
Q 009568          192 PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD--QVRPALPALAQLVHS--------------  255 (532)
Q Consensus       192 ~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~--~~~~~l~~L~~lL~~--------------  255 (532)
                      .......-...-...++..+....+......++.++..+.+.++.....  .....++.++..|+.              
T Consensus       154 ~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~  233 (477)
T d1ho8a_         154 LHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATN  233 (477)
T ss_dssp             TCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-----------
T ss_pred             ccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCccHHHHHHHcccchHHHHHHHHHHHhcccccchhhccc
Confidence            4322211111012233333435556677777888888888775333222  123345555555432              


Q ss_pred             ---CCHHHHHHHHHHHHHhccCChhHHHHHHHh--CchHHHHHhhC-CCCccchhhHHHHHHHhhcCCcc-----hhHHH
Q 009568          256 ---NDEEVLTDACWALSYLSDGTNDKIQAVIEA--GVCPRLVELLG-HPSPSVLIPALRTVGNIVTGDDF-----QTQCI  324 (532)
Q Consensus       256 ---~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~l~~L~~lL~-~~~~~v~~~al~~L~nl~~~~~~-----~~~~~  324 (532)
                         ...+++..++.+++-++.. +.....+.+.  +.++.++.++. .....+..-++.++.|++.....     ....+
T Consensus       234 ~~~~~~Ql~Y~~ll~lWlLSF~-~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~  312 (477)
T d1ho8a_         234 SNHLGIQLQYHSLLLIWLLTFN-PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLL  312 (477)
T ss_dssp             --CCHHHHHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHHHHHHHcC-HHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Confidence               1246799999999999864 3344555554  34778888874 46677888899999999875432     23345


Q ss_pred             hhcCchHHHHHHhcCCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhcCc---hhHHH-HHHHHHHHhh
Q 009568          325 ITYGALPYLLGLLTHSH-KKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAE---FDIKK-EAAWAISNAT  399 (532)
Q Consensus       325 ~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~---~~v~~-~a~~aL~nl~  399 (532)
                      +.+++++.+-.+..... |+++.... ..|......   .++   +..-+..-..-+.++.   ..+-+ +.-|- -|..
T Consensus       313 v~~~~l~~l~~L~~r~~~Dedl~edl-~~L~~~L~~---~~k---~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~-EN~~  384 (477)
T d1ho8a_         313 LLGNALPTVQSLSERKYSDEELRQDI-SNLKEILEN---EYQ---ELTSFDEYVAELDSKLLCWSPPHVDNGFWS-DNID  384 (477)
T ss_dssp             HHHCHHHHHHHHHSSCCSSHHHHHHH-HHHHHHHHH---HHH---TCCHHHHHHHHHHHTCCCCCGGGGCHHHHH-HHSG
T ss_pred             HHcchhHHHHHHhcCCCCCHHHHHHH-HHHHHHHHH---HHH---hcCcHHHHHHHHhcCCCCCCCCcCChhHHH-HHHH
Confidence            56666666544443221 44443322 222222110   000   0000111111111110   00000 11111 1111


Q ss_pred             cCCCHHHHHHHHHcCChHHHHhhcC----------CCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhc
Q 009568          400 SGGTHEQIKYLVREGCIKPLCDLFV----------CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAE  469 (532)
Q Consensus       400 ~~~~~~~~~~l~~~~~l~~L~~lL~----------~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g  469 (532)
                      ...+.       +..++..|+++|+          +.|+.+..+|+.=+..+++..+..             ...+++.|
T Consensus       385 kf~e~-------~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~g-------------r~il~~lg  444 (477)
T d1ho8a_         385 EFKKD-------NYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPES-------------IDVLDKTG  444 (477)
T ss_dssp             GGSSG-------GGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTH-------------HHHHHHHS
T ss_pred             hhccc-------chHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcch-------------hHHHHHcC
Confidence            11010       0124778888885          357788888898899998876543             66788999


Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009568          470 GLEKIENLQSHDNNEIYEKAVKILETYW  497 (532)
Q Consensus       470 ~~~~l~~L~~~~~~~v~~~a~~il~~~~  497 (532)
                      +-+.+..|+.|+|++|+..|...+.++.
T Consensus       445 ~K~~vM~Lm~h~d~~Vr~eAL~avQklm  472 (477)
T d1ho8a_         445 GKADIMELLNHSDSRVKYEALKATQAII  472 (477)
T ss_dssp             HHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999888753

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.56  E-value=1e-06  Score=83.33  Aligned_cols=276  Identities=15%  Similarity=0.146  Sum_probs=178.6

Q ss_pred             HHHHhhhcCCChHHHHHHHHHHHHHhcCCCCCc--hhHhhhCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 009568           77 PAMVAGVWSDDSSLQLEATTQFRKLLSIERSPP--IEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (532)
Q Consensus        77 ~~lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~--~~~~i~~g~i~~Lv~lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~  154 (532)
                      +.+...+.+++.-....+...+..+++......  .+....  ....+-.+....+ .+.+..|+.++..+.. .++.+.
T Consensus       125 ~~f~~~l~~~d~~~~~~s~~i~~ll~~~~~~~~~~~e~l~~--~~~~l~~l~~~~~-~~~~~i~v~~lq~llr-~~~~R~  200 (477)
T d1ho8a_         125 QLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLK--NNNLINILQNIEQ-MDTCYVCIRLLQELAV-IPEYRD  200 (477)
T ss_dssp             HHHHHCSCSSHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHH--CHHHHHHHHCTTC-HHHHHHHHHHHHHHHT-SHHHHH
T ss_pred             HHHHHhccCchhHHHHHHHHHHHHHHhccccccchHHHHHH--hhHHHHHhhcccc-cchHHHHHHHHHHHhc-CccHHH
Confidence            445556666676677777777787776531111  111222  2333334445566 7889999999999988 788888


Q ss_pred             HHHh--CCChHHHHHhhCC-----------------CCHHHHHHHHHHHHHhhCCCchhHHHHHhc--CChHHHHHHhhh
Q 009568          155 VVID--HGAVPIFVKLLAS-----------------PSDDVREQAVWALGNVAGDSPRCRDLVLSQ--GALIPLLAQLNE  213 (532)
Q Consensus       155 ~i~~--~g~i~~L~~lL~~-----------------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~--~~l~~L~~ll~~  213 (532)
                      .+..  ...++.|+..|..                 ....+.-.++.+++-++.+. .....+.+.  +.++.++.++..
T Consensus       201 ~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~-~~~~~l~~~~~~~i~~l~~i~~~  279 (477)
T d1ho8a_         201 VIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNP-VFANELVQKYLSDFLDLLKLVKI  279 (477)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSH-HHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCH-HHHHHHHHhhhHHHHHHHHHHHh
Confidence            7754  2346666665532                 12477888899999987644 344454443  347888888877


Q ss_pred             hhhhHHHHHHHHHhhhccCCCCCCC------cccccchHHHHHHhhc--CCCHHHHHHHHHHHHHhcc------CChhHH
Q 009568          214 RAKLSMLRNATWTLSNFCRGKPQPP------FDQVRPALPALAQLVH--SNDEEVLTDACWALSYLSD------GTNDKI  279 (532)
Q Consensus       214 ~~~~~~~~~a~~~L~~L~~~~~~~~------~~~~~~~l~~L~~lL~--~~d~~v~~~a~~~L~~l~~------~~~~~~  279 (532)
                      +..+.+.+.++.++.|++.......      .....++++.+..+..  -.|+++..+.-..-..|..      .-+++.
T Consensus       280 s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~  359 (477)
T d1ho8a_         280 TIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYV  359 (477)
T ss_dssp             CCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            7889999999999999997642111      1122344444433333  2377665443322111110      001111


Q ss_pred             H----------------HHHH----------hCchHHHHHhhC----------CCCccchhhHHHHHHHhhcCCcchhHH
Q 009568          280 Q----------------AVIE----------AGVCPRLVELLG----------HPSPSVLIPALRTVGNIVTGDDFQTQC  323 (532)
Q Consensus       280 ~----------------~~~~----------~~~l~~L~~lL~----------~~~~~v~~~al~~L~nl~~~~~~~~~~  323 (532)
                      .                .+..          ..++..|+.+|.          +.++.+..-||.=||.++...|..+..
T Consensus       360 ~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~i  439 (477)
T d1ho8a_         360 AELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDV  439 (477)
T ss_dssp             HHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred             HHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHH
Confidence            1                1111          136788888885          235667888999999999999988877


Q ss_pred             HhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 009568          324 IITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (532)
Q Consensus       324 ~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  358 (532)
                      +-+.|+=..++.++.++ +++||.+|..++..+..
T Consensus       440 l~~lg~K~~vM~Lm~h~-d~~Vr~eAL~avQklm~  473 (477)
T d1ho8a_         440 LDKTGGKADIMELLNHS-DSRVKYEALKATQAIIG  473 (477)
T ss_dssp             HHHHSHHHHHHHHTSCS-SHHHHHHHHHHHHHHHH
T ss_pred             HHHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            77889999999999999 99999999999988764

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.40  E-value=7.7e-08  Score=74.26  Aligned_cols=109  Identities=19%  Similarity=0.201  Sum_probs=88.7

Q ss_pred             hCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHH
Q 009568          295 LGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVG  374 (532)
Q Consensus       295 L~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~  374 (532)
                      |.++++.+|..|+++|+.+..            ..++.|+..|.++ ++.+|..|+++|+++..  +.         .++
T Consensus         1 L~D~~~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~-~~~vR~~a~~~L~~~~~--~~---------~~~   56 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNE-DWRIRGAAAWIIGNFQD--ER---------AVE   56 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCS-CHHHHHHHHHHHGGGCS--HH---------HHH
T ss_pred             CCCcCHHHHHHHHHHHHHhCH------------HHHHHHHHHHcCC-CHHHHHHHHHHHHhcch--hh---------hHH
Confidence            467888999999998876531            3467788999988 99999999999998742  22         467


Q ss_pred             HHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHH
Q 009568          375 PLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLE  439 (532)
Q Consensus       375 ~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~  439 (532)
                      .|..++.++++.||..|+++|+.+.   ++         +.++.|..+++++++.++..++.+|.
T Consensus        57 ~L~~~l~d~~~~VR~~a~~aL~~i~---~~---------~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          57 PLIKLLEDDSGFVRSGAARSLEQIG---GE---------RVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHHHCCTHHHHHHHHHHHHHC---SH---------HHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHHhhhccchhHHHHHHHHHHHHhC---cc---------chHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            8899999999999999999999883   22         24677788999999999999988774

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.22  E-value=1.1e-07  Score=73.43  Aligned_cols=108  Identities=19%  Similarity=0.222  Sum_probs=87.6

Q ss_pred             cCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHH
Q 009568          127 MREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIP  206 (532)
Q Consensus       127 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~  206 (532)
                      ++++ +.+|..|+++|+.+..            ..++.|+..|.++++.+|..++++|+++..  +         +.++.
T Consensus         2 ~D~~-~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~--~---------~~~~~   57 (111)
T d1te4a_           2 ADEN-KWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---------RAVEP   57 (111)
T ss_dssp             CSSC-CCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---------HHHHH
T ss_pred             CCcC-HHHHHHHHHHHHHhCH------------HHHHHHHHHHcCCCHHHHHHHHHHHHhcch--h---------hhHHH
Confidence            4455 6788888888776532            357889999999999999999999998742  1         14678


Q ss_pred             HHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHH
Q 009568          207 LLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALS  269 (532)
Q Consensus       207 L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~  269 (532)
                      |..++ .+.++.++..++++|..+..          ...++.|..++.++++.++..++.+|.
T Consensus        58 L~~~l-~d~~~~VR~~a~~aL~~i~~----------~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          58 LIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHhhh-ccchhHHHHHHHHHHHHhCc----------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            88888 78899999999999998753          467889999999999999999988763

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=0.0026  Score=55.99  Aligned_cols=201  Identities=15%  Similarity=0.124  Sum_probs=148.3

Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH----HHHHhcCChHHHHHHhhhhhhhHHHHHHHHHhhhc
Q 009568          155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR----DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF  230 (532)
Q Consensus       155 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~----~~~~~~~~l~~L~~ll~~~~~~~~~~~a~~~L~~L  230 (532)
                      .+...+.+..|+..|..-+.+-|..++.+++++.......+    +.+...  ...+..++....++++.-.+-..|...
T Consensus        64 e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~--~eil~~L~~gye~~eiAl~~G~mLREc  141 (330)
T d1upka_          64 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ--QNILFMLLKGYESPEIALNCGIMLREC  141 (330)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC--THHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred             HHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcC--HHHHHHHHhhcCCcchhhhhhHHHHHH
Confidence            34456778889999988889999999999999986544333    344432  345555554556777777777777777


Q ss_pred             cCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhC---chHHHHHhhCCCCccchhhHH
Q 009568          231 CRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAG---VCPRLVELLGHPSPSVLIPAL  307 (532)
Q Consensus       231 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---~l~~L~~lL~~~~~~v~~~al  307 (532)
                      ++...........+.+..+.+.+..++=++..+|..++..+...+.......+..+   ++..+..+|.+++..++..++
T Consensus       142 ik~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSl  221 (330)
T d1upka_         142 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL  221 (330)
T ss_dssp             HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HhhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHH
Confidence            76643333334445566677788888999999999999998877766666666554   677778899999999999999


Q ss_pred             HHHHHhhcCCcc---hhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 009568          308 RTVGNIVTGDDF---QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (532)
Q Consensus       308 ~~L~nl~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  358 (532)
                      ..||.+......   .+.++-+..-+..++.+|++. +..++-+|..++--+.+
T Consensus       222 KLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~-sk~Iq~EAFhVFKvFVA  274 (330)
T d1upka_         222 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVA  274 (330)
T ss_dssp             HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCc-hhhHHHHhhhHhhhhhc
Confidence            999999864432   123334456788999999998 99999999999888776

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.014  Score=51.26  Aligned_cols=204  Identities=13%  Similarity=0.077  Sum_probs=148.6

Q ss_pred             HHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcc----hhHHHhhc-CchHHHHHHhcCCCchhHHHHHHHHHH
Q 009568          280 QAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDF----QTQCIITY-GALPYLLGLLTHSHKKSIKKEACWTIS  354 (532)
Q Consensus       280 ~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~----~~~~~~~~-~~l~~L~~lL~~~~~~~v~~~a~~~L~  354 (532)
                      +.+...+++..|+..|..-+.+.+..+..+++++......    ..+++... .++..|+....   ++++--.+...|.
T Consensus        63 ~e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye---~~eiAl~~G~mLR  139 (330)
T d1upka_          63 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE---SPEIALNCGIMLR  139 (330)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG---STTTHHHHHHHHH
T ss_pred             HHHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcC---CcchhhhhhHHHH
Confidence            4566778999999999998899999999999999875442    23444432 23333333333   4556555656666


Q ss_pred             HHhcCCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHc---CChHHHHhhcCCCCHHHH
Q 009568          355 NITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVRE---GCIKPLCDLFVCPDPRIV  431 (532)
Q Consensus       355 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~---~~l~~L~~lL~~~d~~v~  431 (532)
                      -++.. +.....++...-+..+++.++.++.++...|..++..+.... +.....++..   .....+..+|.+++.-++
T Consensus       140 Ecik~-e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~h-k~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtr  217 (330)
T d1upka_         140 ECIRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRH-KLLSAEFLEQHYDRFFSEYEKLLHSENYVTK  217 (330)
T ss_dssp             HHHTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHTHHHHHHHHHHHTTCSSHHHH
T ss_pred             HHHhh-HHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhC-HHHHHHHHHHhHHHHHHHHHHHhcCCchHHH
Confidence            66554 666777888888899999999999999999999999888764 3433333433   346777889999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009568          432 TVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL  498 (532)
Q Consensus       432 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~  498 (532)
                      ..++..|..++-...+..          -....+.+..-+..+..|..+++..|+-.|..+..-|..
T Consensus       218 RqSlKLLgelLldr~N~~----------vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVA  274 (330)
T d1upka_         218 RQSLKLLGELLLDRHNFT----------IMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA  274 (330)
T ss_dssp             HHHHHHHHHHHHSGGGHH----------HHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhHHH----------HHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhc
Confidence            999999999997654422          234455566667888889999999999999887765543

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.07  E-value=8.2e-05  Score=64.35  Aligned_cols=182  Identities=14%  Similarity=0.097  Sum_probs=116.5

Q ss_pred             hhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCCh
Q 009568          125 FLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGAL  204 (532)
Q Consensus       125 lL~~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l  204 (532)
                      +|.++. .+++..|+.                  .-.+..|..+++++++.||..++..|+                  .
T Consensus        50 ~l~~p~-~e~Ra~Aa~------------------~a~~~~L~~Ll~D~d~~VR~~AA~~Lp------------------~   92 (233)
T d1lrva_          50 YLADPF-WERRAIAVR------------------YSPVEALTPLIRDSDEVVRRAVAYRLP------------------R   92 (233)
T ss_dssp             GTTCSS-HHHHHHHHT------------------TSCGGGGGGGTTCSSHHHHHHHHTTSC------------------S
T ss_pred             HhcCCc-HHHHHHHHh------------------cCCHHHHHHHhcCCCHHHHHHHHHHcC------------------H
Confidence            455665 677755542                  123567788899999999998876431                  1


Q ss_pred             HHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHH
Q 009568          205 IPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIE  284 (532)
Q Consensus       205 ~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~  284 (532)
                      ..+..++ .+++..++..+...+.                 .+.|..++.++++.|+..+...+                
T Consensus        93 ~~L~~L~-~D~d~~VR~~aa~~l~-----------------~~~L~~Ll~D~d~~VR~~aa~~~----------------  138 (233)
T d1lrva_          93 EQLSALM-FDEDREVRITVADRLP-----------------LEQLEQMAADRDYLVRAYVVQRI----------------  138 (233)
T ss_dssp             GGGGGTT-TCSCHHHHHHHHHHSC-----------------TGGGGGGTTCSSHHHHHHHHHHS----------------
T ss_pred             HHHHHHh-cCCChhHHHHHHhccC-----------------HHHHHHHhcCCCHHHHHHHHhcc----------------
Confidence            2234444 6778888877766431                 13455677888888887775431                


Q ss_pred             hCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHH
Q 009568          285 AGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI  364 (532)
Q Consensus       285 ~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~  364 (532)
                        ..+.|..++.++++.++..+...+                  ..+.|..++++. ++.||..++..++          
T Consensus       139 --~~~~L~~L~~D~d~~VR~~aA~~~------------------~~~~L~~l~~D~-d~~VR~~aa~~L~----------  187 (233)
T d1lrva_         139 --PPGRLFRFMRDEDRQVRKLVAKRL------------------PEESLGLMTQDP-EPEVRRIVASRLR----------  187 (233)
T ss_dssp             --CGGGGGGTTTCSCHHHHHHHHHHS------------------CGGGGGGSTTCS-SHHHHHHHHHHCC----------
T ss_pred             --chhHHHHHhcCCCHHHHHHHHHhc------------------CHHHHHHHccCC-CHHHHHHHHHhcC----------
Confidence              123455666777888887665421                  134566677777 8888888775432          


Q ss_pred             HHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHH
Q 009568          365 QAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLE  436 (532)
Q Consensus       365 ~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~  436 (532)
                              .+.|..++.+.+..||..++..                    +.+.++..|.++|+.|+..+..
T Consensus       188 --------~~~L~~l~~D~d~~VR~aaae~--------------------~~~~ll~~L~D~d~~VR~aA~~  231 (233)
T d1lrva_         188 --------GDDLLELLHDPDWTVRLAAVEH--------------------ASLEALRELDEPDPEVRLAIAG  231 (233)
T ss_dssp             --------GGGGGGGGGCSSHHHHHHHHHH--------------------SCHHHHHHCCCCCHHHHHHHHC
T ss_pred             --------cHHHHHHHhCCCHHHHHHHHHh--------------------ccHHHHHHhCCCCHHHHHHHHH
Confidence                    1456667777888888777531                    2234556778888888877653

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.80  E-value=0.0085  Score=63.30  Aligned_cols=299  Identities=10%  Similarity=0.076  Sum_probs=155.4

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhh----C--CCCHHHHHHHHHHHHHhhCCCchhHHHHHh----cCC
Q 009568          134 LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL----A--SPSDDVREQAVWALGNVAGDSPRCRDLVLS----QGA  203 (532)
Q Consensus       134 ~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL----~--~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~----~~~  203 (532)
                      .+..|..++..++....+.....+    .+.+...+    .  +.+...++.++.+++.++............    ...
T Consensus       377 ~r~~a~~ll~~l~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~  452 (959)
T d1wa5c_         377 RRRACTDFLKELKEKNEVLVTNIF----LAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNV  452 (959)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHH----HHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCH
T ss_pred             HHHHHHHHHHHHHHhccccchHHH----HHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhH
Confidence            456666677777764433322221    22222222    2  256788888888888876432111100000    011


Q ss_pred             hHHH----HHHhh--hhhhhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChh
Q 009568          204 LIPL----LAQLN--ERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTND  277 (532)
Q Consensus       204 l~~L----~~ll~--~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~  277 (532)
                      .+.+    ...+.  ....+.++..++|+++..+....   ......+++.++.+|.+++..++..|++++..++.....
T Consensus       453 ~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~---~~~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~  529 (959)
T d1wa5c_         453 VDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT---KAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRES  529 (959)
T ss_dssp             HHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC---HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSC
T ss_pred             HHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcc
Confidence            1112    22221  22345688889999999887532   234467889999999999999999999999998753221


Q ss_pred             -----------HHHHHHHhCchHHHHHhhCCCCc-----cchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHh----
Q 009568          278 -----------KIQAVIEAGVCPRLVELLGHPSP-----SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLL----  337 (532)
Q Consensus       278 -----------~~~~~~~~~~l~~L~~lL~~~~~-----~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL----  337 (532)
                                 .....+. .++..++..+.....     .....++.+++.++....+....... .+++.+..++    
T Consensus       530 ~~~~~~~~~~~~l~p~l~-~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~-~i~~~l~~~~~~~~  607 (959)
T d1wa5c_         530 NTSPAFIFHKEDISNSTE-ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVTIMA  607 (959)
T ss_dssp             SSSCCBSSCGGGTTTTHH-HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHHHHT
T ss_pred             cccchhhccHHHHHhhHH-HHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh
Confidence                       1111111 234444444433222     12234666666665432221111111 2333443333    


Q ss_pred             cCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCC---CHHHHHHHHHc
Q 009568          338 THSHKKSIKKEACWTISNITA-GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGG---THEQIKYLVRE  413 (532)
Q Consensus       338 ~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~---~~~~~~~l~~~  413 (532)
                      +++.++.....+..+++.+.. .+++....+. ..++|.+...+.....+....+...+..+....   ++...      
T Consensus       608 ~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l~-~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------  680 (959)
T d1wa5c_         608 KNPSNPRFTHYTFESIGAILNYTQRQNLPLLV-DSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIK------  680 (959)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH-HHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTG------
T ss_pred             cCccchHHHHHHHHHHHHHHHhcCchhHHHHH-HHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCCccHHHH------
Confidence            343355667777778887765 2344333333 336788888887766666666666665554322   11110      


Q ss_pred             CChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhh
Q 009568          414 GCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAE  448 (532)
Q Consensus       414 ~~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~  448 (532)
                      ..++.++.............+...+.+++..+...
T Consensus       681 ~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  715 (959)
T d1wa5c_         681 PLAQPLLAPNVWELKGNIPAVTRLLKSFIKTDSSI  715 (959)
T ss_dssp             GGHHHHTSGGGGCCTTTHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHhhHHHHHHhhhHHHHHHHHHHHHHhCHHh
Confidence            12333333222333344556667777777766543

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.39  E-value=0.0021  Score=55.15  Aligned_cols=114  Identities=10%  Similarity=0.106  Sum_probs=64.2

Q ss_pred             hHHHHHhhCCCCccchhhHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 009568          288 CPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAV  367 (532)
Q Consensus       288 l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l  367 (532)
                      +..|..++.++++.|+..+...|+                  .+.+..++.++ +..||..++..+.             
T Consensus        68 ~~~L~~Ll~D~d~~VR~~AA~~Lp------------------~~~L~~L~~D~-d~~VR~~aa~~l~-------------  115 (233)
T d1lrva_          68 VEALTPLIRDSDEVVRRAVAYRLP------------------REQLSALMFDE-DREVRITVADRLP-------------  115 (233)
T ss_dssp             GGGGGGGTTCSSHHHHHHHHTTSC------------------SGGGGGTTTCS-CHHHHHHHHHHSC-------------
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHcC------------------HHHHHHHhcCC-ChhHHHHHHhccC-------------
Confidence            556778888888888888875432                  13455556666 7777766654321             


Q ss_pred             HHcCCHHHHHHHHhcCchhHHHHHHHH-----HHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHH
Q 009568          368 IDAGLVGPLVNLLQNAEFDIKKEAAWA-----ISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGL  438 (532)
Q Consensus       368 ~~~~~i~~L~~ll~~~~~~v~~~a~~a-----L~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L  438 (532)
                           .+.|..++.++++.||..++..     |..++...+++....+...-..+.|..+++++++.|+..+...+
T Consensus       116 -----~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~L  186 (233)
T d1lrva_         116 -----LEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRL  186 (233)
T ss_dssp             -----TGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHC
T ss_pred             -----HHHHHHHhcCCCHHHHHHHHhccchhHHHHHhcCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHhc
Confidence                 1233344455555555555442     22222233333333333333456677777788888877766543

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.07  E-value=0.058  Score=56.54  Aligned_cols=181  Identities=9%  Similarity=0.098  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh--------HHHHHh--c
Q 009568          132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC--------RDLVLS--Q  201 (532)
Q Consensus       132 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~--------~~~~~~--~  201 (532)
                      +.++..++|+++..+.....  ...  ..+++.++.+|.+++..++..|++++..++......        .+.+..  .
T Consensus       472 ~~lr~~~~~~i~~~~~~~~~--~~~--~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~  547 (959)
T d1wa5c_         472 IILRVDAIKYIYTFRNQLTK--AQL--IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTE  547 (959)
T ss_dssp             HHHHHHHHHHHHHTGGGSCH--HHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHH
T ss_pred             HHHHHHHHHHHHHHHhhccH--HHH--HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHH
Confidence            78999999999998863321  111  245789999999999999999999999997532110        000000  0


Q ss_pred             CChHHHHHHhhhhh----hhHHHHHHHHHhhhccCCCCCCCcccccchHHHHHHhhc----C-CCHHHHHHHHHHHHHhc
Q 009568          202 GALIPLLAQLNERA----KLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH----S-NDEEVLTDACWALSYLS  272 (532)
Q Consensus       202 ~~l~~L~~ll~~~~----~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~----~-~d~~v~~~a~~~L~~l~  272 (532)
                      ..+..++..+....    .......++.++..+.......-......+++.+...+.    + .++.....+..++..+.
T Consensus       548 ~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~  627 (959)
T d1wa5c_         548 ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAIL  627 (959)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence            12333444442211    111122344444444332222222233445555555442    2 25667777777777776


Q ss_pred             cCC-hhHHHHHHHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCC
Q 009568          273 DGT-NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGD  317 (532)
Q Consensus       273 ~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~  317 (532)
                      ... ++... .+...++|.+...+..........++..+..+....
T Consensus       628 ~~~~~~~~~-~l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~  672 (959)
T d1wa5c_         628 NYTQRQNLP-LLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS  672 (959)
T ss_dssp             HTSCGGGHH-HHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred             HhcCchhHH-HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhC
Confidence            432 33323 233467788888887777777777888777776543

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.14  E-value=0.17  Score=45.70  Aligned_cols=139  Identities=12%  Similarity=0.075  Sum_probs=101.1

Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHH-HcCCHHHHHHHHhcCchhHHHHHHHHHHHhhcCCC-----HHHHH------HH
Q 009568          343 KSIKKEACWTISNITAGNRDQIQAVI-DAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGT-----HEQIK------YL  410 (532)
Q Consensus       343 ~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~-----~~~~~------~l  410 (532)
                      .....++..||..+... ......++ ..+.+..++..+.++.+.++..|...|..++....     .....      ..
T Consensus        70 ~~~e~e~l~CLkalmn~-~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~  148 (343)
T d2bnxa1          70 SRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM  148 (343)
T ss_dssp             HHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcc-HHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHh
Confidence            45777888999888764 45555666 56779999999999999999999999998875421     11111      12


Q ss_pred             HHcCChHHHHhhcCCC-CHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHH
Q 009568          411 VREGCIKPLCDLFVCP-DPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKA  489 (532)
Q Consensus       411 ~~~~~l~~L~~lL~~~-d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a  489 (532)
                      .+.+-...+++.|+.. +.+....++..+..++...+....       -......|..+|..+.++.|...+++++....
T Consensus       149 ~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~-------R~~lR~E~~~~Gl~~il~~l~~~~~~~L~~Qi  221 (343)
T d2bnxa1         149 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF-------RVHIRSELMRLGLHQVLQELREIENEDMKVQL  221 (343)
T ss_dssp             HTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHH-------HHHHHHHHHHTTHHHHHHHHTTCCCHHHHHHH
T ss_pred             cCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHH-------HHHHHHHHHHCChHHHHHHHHccCChHHHHHH
Confidence            2345578888888754 567888888888888876555432       22356778889999999999999998876543

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=95.01  E-value=1.1  Score=39.92  Aligned_cols=207  Identities=17%  Similarity=0.154  Sum_probs=123.1

Q ss_pred             ChHHHHHhhCCCC--HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhhh---hhhhHHHHHHHHHhhhcc----
Q 009568          161 AVPIFVKLLASPS--DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE---RAKLSMLRNATWTLSNFC----  231 (532)
Q Consensus       161 ~i~~L~~lL~~~~--~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~ll~~---~~~~~~~~~a~~~L~~L~----  231 (532)
                      ++..+.+++.+..  ..-....++.+.....  |. .+      .+..+..++..   ..++.+...+..++++|.    
T Consensus        89 a~~~i~~~I~~~~ls~~ea~~~l~~l~~~~~--Pt-~~------~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c  159 (336)
T d1lsha1          89 ALLFLKRTLASEQLTSAEATQIVASTLSNQQ--AT-RE------SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYC  159 (336)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHTCC--CC-HH------HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHhccCC--CC-HH------HHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHh
Confidence            3455666665533  2223333444443322  21 12      24455566532   235666666666666554    


Q ss_pred             CCCCCCCcccccchHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCCC-------Cccchh
Q 009568          232 RGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP-------SPSVLI  304 (532)
Q Consensus       232 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-------~~~v~~  304 (532)
                      ...+.........+...+.+.....+.+-+..++.+|+|+..  +         +.++.|..++...       ...++.
T Consensus       160 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p---------~~i~~l~~~l~~~~~~~~~~~~~vR~  228 (336)
T d1lsha1         160 ANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQA  228 (336)
T ss_dssp             TTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHH
T ss_pred             cCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC--H---------hHHHHHHHHhcccccccccccHHHHH
Confidence            333333344445555566666667787878888999999852  2         4567777777542       345889


Q ss_pred             hHHHHHHHhhcCCcchhHHHhhcCchHHHHHHhcC-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc-
Q 009568          305 PALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH-SHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN-  382 (532)
Q Consensus       305 ~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-  382 (532)
                      .|++++.+++...+...        .+.+..++.+ ..++++|-.|+..|... ..+..         .+..+...+.. 
T Consensus       229 aAi~Alr~~~~~~p~~v--------~~~l~~i~~n~~e~~EvRiaA~~~lm~t-~P~~~---------~l~~i~~~l~~E  290 (336)
T d1lsha1         229 EAIMALRNIAKRDPRKV--------QEIVLPIFLNVAIKSELRIRSCIVFFES-KPSVA---------LVSMVAVRLRRE  290 (336)
T ss_dssp             HHHHTTTTGGGTCHHHH--------HHHHHHHHHCTTSCHHHHHHHHHHHHHT-CCCHH---------HHHHHHHHHTTC
T ss_pred             HHHHHHHHhhhcCcHHH--------HHHHHHHHcCCCCChHHHHHHHHHHHhc-CCCHH---------HHHHHHHHHHhC
Confidence            99999999887654222        2345555543 33678998888887653 22233         33455565654 


Q ss_pred             CchhHHHHHHHHHHHhhcCCCHH
Q 009568          383 AEFDIKKEAAWAISNATSGGTHE  405 (532)
Q Consensus       383 ~~~~v~~~a~~aL~nl~~~~~~~  405 (532)
                      .+..|...+...|.+++....|.
T Consensus       291 ~~~QV~sfv~S~l~~la~s~~P~  313 (336)
T d1lsha1         291 PNLQVASFVYSQMRSLSRSSNPE  313 (336)
T ss_dssp             SCHHHHHHHHHHHHHHTTCCSGG
T ss_pred             cHHHHHHHHHHHHHHHHhCCCcc
Confidence            47788888888888888866554

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=94.85  E-value=0.33  Score=43.61  Aligned_cols=166  Identities=14%  Similarity=0.049  Sum_probs=90.1

Q ss_pred             chHHHHHHhhcCCC--HHHHHHHHHHHHHhccCChhHHHHHHHhCchHHHHHhhCC----CCccchhhHHHHHHHhhcC-
Q 009568          244 PALPALAQLVHSND--EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH----PSPSVLIPALRTVGNIVTG-  316 (532)
Q Consensus       244 ~~l~~L~~lL~~~d--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~----~~~~v~~~al~~L~nl~~~-  316 (532)
                      ..+..+..++.+.+  .......++.+.....-+.         ..+..+..++.+    .++.++..++.++|+++.. 
T Consensus        88 ~a~~~i~~~I~~~~ls~~ea~~~l~~l~~~~~Pt~---------~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~  158 (336)
T d1lsha1          88 EALLFLKRTLASEQLTSAEATQIVASTLSNQQATR---------ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRY  158 (336)
T ss_dssp             HHHHHHHHHHHTTCSCHHHHHHHHHHHHHTCCCCH---------HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHhccCCCCH---------HHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHH
Confidence            44555666665543  2233344444544333222         234445555554    4567778888888888742 


Q ss_pred             ---CcchhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhc-------Cchh
Q 009568          317 ---DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN-------AEFD  386 (532)
Q Consensus       317 ---~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-------~~~~  386 (532)
                         .+.....+++ .+...+....... +.+-+..+..+|||+.  .+.         .++.|..++..       .+..
T Consensus       159 c~~~~~~~~~~~~-~l~~~l~~~~~~~-~~~~~~~~LkaLGN~g--~p~---------~i~~l~~~l~~~~~~~~~~~~~  225 (336)
T d1lsha1         159 CANTVSCPDELLQ-PLHDLLSQSSDRA-KEEEIVLALKALGNAG--QPN---------SIKKIQRFLPGQGKSLDEYSTR  225 (336)
T ss_dssp             HTTCSSCCGGGTH-HHHHHHHHHHHTT-CHHHHHHHHHHHHHHT--CGG---------GHHHHHTTSTTSSSCCCCSCHH
T ss_pred             hcCCCCCcHHHHH-HHHHHHHHhhccc-chHHHHHHHHHHhccC--CHh---------HHHHHHHHhcccccccccccHH
Confidence               1111111111 1223333444455 5566667888999985  333         45566666643       2467


Q ss_pred             HHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHH
Q 009568          387 IKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGL  438 (532)
Q Consensus       387 v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L  438 (532)
                      +|..|.+||.++.... +.....    -+++.+.+  ...++++|..|...|
T Consensus       226 vR~aAi~Alr~~~~~~-p~~v~~----~l~~i~~n--~~e~~EvRiaA~~~l  270 (336)
T d1lsha1         226 VQAEAIMALRNIAKRD-PRKVQE----IVLPIFLN--VAIKSELRIRSCIVF  270 (336)
T ss_dssp             HHHHHHHTTTTGGGTC-HHHHHH----HHHHHHHC--TTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhcC-cHHHHH----HHHHHHcC--CCCChHHHHHHHHHH
Confidence            9999999999998763 332221    01222222  356788887776654

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.36  E-value=0.91  Score=40.71  Aligned_cols=156  Identities=10%  Similarity=0.074  Sum_probs=97.9

Q ss_pred             HHHhhhcCCCh-HHHHHHHHHHHHHhcCCCCCchhHhhhCCcHHHHHHhhc----CC------CCHHHHHHHHHHHHHHh
Q 009568           78 AMVAGVWSDDS-SLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLM----RE------DYPQLQFEAAWALTNIA  146 (532)
Q Consensus        78 ~lv~~L~s~~~-~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~----~~------~~~~~~~~a~~~L~~l~  146 (532)
                      ..|..|+++-. ......+..|+--+..++..=++.+ ..+++..|+.+|.    ..      .+...+..++.||..+.
T Consensus         6 ~yv~~l~~~~~~~~~~~~L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalm   84 (343)
T d2bnxa1           6 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM   84 (343)
T ss_dssp             HHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHh
Confidence            44555555432 3334455666555654211124445 3456666777663    11      12568899999999999


Q ss_pred             cCChhhHHHH-HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC--chhHHH----------HHhcCChHHHHHHhhh
Q 009568          147 SGTSENTKVV-IDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS--PRCRDL----------VLSQGALIPLLAQLNE  213 (532)
Q Consensus       147 ~~~~~~~~~i-~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~--~~~~~~----------~~~~~~l~~L~~ll~~  213 (532)
                      . +......+ -..+++..+...|.+++..++..|+.+|..+|...  +.....          .-+.+-+.+++..+..
T Consensus        85 n-~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~  163 (343)
T d2bnxa1          85 N-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS  163 (343)
T ss_dssp             S-SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTST
T ss_pred             c-cHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhc
Confidence            8 44444444 45678999999999999999999999999998532  111122          2234556777777755


Q ss_pred             hhhhHHHHHHHHHhhhccCCCC
Q 009568          214 RAKLSMLRNATWTLSNFCRGKP  235 (532)
Q Consensus       214 ~~~~~~~~~a~~~L~~L~~~~~  235 (532)
                      ..+.+....++..+-.+..+.+
T Consensus       164 ~~~~ey~~a~m~lIN~li~~~~  185 (343)
T d2bnxa1         164 GTSIALKVGCLQLINALITPAE  185 (343)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCS
T ss_pred             cccHHHHHHHHHHHHHHHcCcc
Confidence            5566677777776666666543

>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.33  E-value=2.3  Score=37.63  Aligned_cols=217  Identities=12%  Similarity=0.064  Sum_probs=108.8

Q ss_pred             CCCCHHHHHHHHHHHHHHhcC---ChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCCh
Q 009568          128 REDYPQLQFEAAWALTNIASG---TSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGAL  204 (532)
Q Consensus       128 ~~~~~~~~~~a~~~L~~l~~~---~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l  204 (532)
                      ...||.++. +...|..+...   ++......++...+..|+.++.++++.=|+....+|..+-+.....|..+.. .+.
T Consensus        99 e~sWpHL~l-VY~ill~f~~s~~~~~~~~~~~id~~Fi~~Ll~lf~S~D~rER~~lk~~l~~iy~kf~~~R~~Ir~-~i~  176 (343)
T d2jaka1          99 EAAWPHLQL-VYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QIN  176 (343)
T ss_dssp             CTTHHHHHH-HHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-HHH
T ss_pred             CCCCchHHH-HHHHHHHHHhccccCchhHHhhCCHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhhhHHHHHHH-HHH
Confidence            345666554 34444444431   1233333444556788899999999999999999999987766666665433 234


Q ss_pred             HHHHHHhhhhhhhHHHHHHHHHhhhccCCCCCC-CcccccchHHHHHHhhcCCCHH-HHHHHHHHHHHhccCChhHHHHH
Q 009568          205 IPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP-PFDQVRPALPALAQLVHSNDEE-VLTDACWALSYLSDGTNDKIQAV  282 (532)
Q Consensus       205 ~~L~~ll~~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL~~~d~~-v~~~a~~~L~~l~~~~~~~~~~~  282 (532)
                      ..+.+.+.......-...+++.++.+..+-..+ ......-....++.+.+...-. .-.....++......++..... 
T Consensus       177 ~if~~fi~e~~~~~gI~elLeil~sii~gf~~plkeeh~~f~~~vllPLhk~~~~~~y~~qL~~~v~~f~~kDp~l~~~-  255 (343)
T d2jaka1         177 NIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-  255 (343)
T ss_dssp             HHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHH-
T ss_pred             HHHHHHhhcCCCCccHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcCchhHHH-
Confidence            455555533334444555666666666654322 2222233344455555443221 1222222333333233322221 


Q ss_pred             HHhCchHHHHHhhCCCCccchhhHHHHHHHhhcCCcc-hhHHHhhcCchHHHHHHhcCCCchhHHHHHHHHH
Q 009568          283 IEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDF-QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI  353 (532)
Q Consensus       283 ~~~~~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~-~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L  353 (532)
                          ++..++.+=-..+..-...-+.-|..+....+. ....+ -..+...+...+.++ +..|-..|+...
T Consensus       256 ----~i~~llk~WP~t~~~Kev~FL~el~~il~~~~~~~f~~~-~~~lf~~la~ci~S~-h~qVAErAl~~w  321 (343)
T d2jaka1         256 ----VVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKI-MEPLFRQLAKCVSSP-HFQVAERALYYW  321 (343)
T ss_dssp             ----HHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHH-HHHHHHHHHHHHTCS-SHHHHHHHHGGG
T ss_pred             ----HHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence                122222221112333333344555555554432 22222 224566677777777 777777666544

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.25  E-value=4.4  Score=30.73  Aligned_cols=73  Identities=10%  Similarity=-0.075  Sum_probs=59.0

Q ss_pred             HHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCC------CCHHHHHHHHHHHHHHHHhh
Q 009568          373 VGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC------PDPRIVTVCLEGLENILKVG  445 (532)
Q Consensus       373 i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~------~d~~v~~~al~~L~~l~~~~  445 (532)
                      +..|..-+.++++.++..|+..|-.+..++.+.+...+.+.+++..|..++..      .+..|...++..+.......
T Consensus        47 ~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~f  125 (145)
T d1ujka_          47 TRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL  125 (145)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHC
Confidence            45566778888999999999999999999888887887888888999888863      46678888888887765443

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.39  E-value=4.1  Score=30.80  Aligned_cols=72  Identities=8%  Similarity=-0.082  Sum_probs=57.5

Q ss_pred             HHHHHHHHhcCchhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhhcCC------CCHHHHHHHHHHHHHHHHh
Q 009568          373 VGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC------PDPRIVTVCLEGLENILKV  444 (532)
Q Consensus       373 i~~L~~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~l~~L~~lL~~------~d~~v~~~al~~L~~l~~~  444 (532)
                      +..|..-+.++++.++..|+..|-.+..++.+.+...+...+.+..|..++..      .++.|...++..+......
T Consensus        40 ~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~~  117 (143)
T d1mhqa_          40 PWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW  117 (143)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            44566678888999999999999999988877777777777888889888863      4678998888888777554

>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Exportin HEAT-like repeat
domain: Exportin-1 (Xpo1, Crm1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.22  E-value=15  Score=31.80  Aligned_cols=183  Identities=14%  Similarity=0.107  Sum_probs=98.0

Q ss_pred             chhhHHHHHHHhhcCCcchhHHHhhcCchHHHHH-Hh---cCCCchhHH-HHHHHHHHHHh----cCCHHHHHHHHHcCC
Q 009568          302 VLIPALRTVGNIVTGDDFQTQCIITYGALPYLLG-LL---THSHKKSIK-KEACWTISNIT----AGNRDQIQAVIDAGL  372 (532)
Q Consensus       302 v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~-lL---~~~~~~~v~-~~a~~~L~nl~----~~~~~~~~~l~~~~~  372 (532)
                      ++...++.+...+...+. .+ .+...++|.++. +|   +.+ .|..| .++..+++.++    ..-.+.+..+++. +
T Consensus        45 iKkeiLkLi~t~i~~~~d-~~-~v~~~~i~pl~~~vL~DY~~~-~p~~R~~eVL~l~~~ii~kl~~~~~~~v~~I~~~-V  120 (321)
T d1w9ca_          45 VKRETLKLISGWVSRSND-PQ-MVAENFVPPLLDAVLIDYQRN-VPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDA-V  120 (321)
T ss_dssp             HHHHHHHHHHHHHTTCSC-HH-HHHHHTHHHHHHHHHHHHHTS-CGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHH-H
T ss_pred             HHHHHHHHHHHHHhcCCC-HH-HHHHHHHHHHHHHHHHHHHhC-chhhccHhHHHHHHHHHHHHHHhhhhHHHHHHHH-H
Confidence            556667777777665542 22 233356666665 33   222 33333 23334444443    2223344444444 5


Q ss_pred             HHHHHHHHhcC---chhHHHHHHHHHHHhhcCC-------CHHHHHHHHHcCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 009568          373 VGPLVNLLQNA---EFDIKKEAAWAISNATSGG-------THEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENIL  442 (532)
Q Consensus       373 i~~L~~ll~~~---~~~v~~~a~~aL~nl~~~~-------~~~~~~~l~~~~~l~~L~~lL~~~d~~v~~~al~~L~~l~  442 (532)
                      +..-+.++..+   -|+.|..--..|..+...+       ++++...     +++.++-.+++++.++...++.++..++
T Consensus       121 Fe~Tl~MI~~df~~yPehR~~ff~LL~~i~~~cf~~ll~lp~~qf~~-----vidsi~wa~kH~~~~V~~~gL~~l~~ll  195 (321)
T d1w9ca_         121 FECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKL-----VLDSIIWAFKHTMRNVADTGLQILFTLL  195 (321)
T ss_dssp             HHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHH-----HHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccchhChHHHHHHHHHHHHHHHHCHHHHHcCCHHHHHH-----HHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence            66667777653   5788877777777776543       2333333     5667777788999999999999999888


Q ss_pred             HhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009568          443 KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLE  499 (532)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~il~~~~~~  499 (532)
                      ..-.+...      ..+.|....--.=..+.+.-+....+..-.+.-..++..+|.-
T Consensus       196 ~n~~~~~~------~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~i  246 (321)
T d1w9ca_         196 QNVAQEEA------AAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNL  246 (321)
T ss_dssp             HHHHHCHH------HHHHHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHH
T ss_pred             HHHhhChH------HHHHHHHHHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence            65443211      1222322222111123333334333333445555666666643

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=80.33  E-value=1.8  Score=33.11  Aligned_cols=71  Identities=20%  Similarity=0.239  Sum_probs=53.5

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCCccchHHHHHHHHhccHHHHHHHh-cCCCHHHHHHHHHHH
Q 009568          415 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQ-SHDNNEIYEKAVKIL  493 (532)
Q Consensus       415 ~l~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~-~~~~~~v~~~a~~il  493 (532)
                      ++..|..-+.++++.++..++..|..++..+...            |...+...+.++.+..+. ...+..|++++..++
T Consensus        43 a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~------------f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li  110 (145)
T d1dvpa1          43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAP------------VHEEVFTKENCEMFSSFLESTPHENVRQKMLELV  110 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH------------HHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchH------------HHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            4666777788999999999999999999875432            444555556666666665 456888999999999


Q ss_pred             HHhC
Q 009568          494 ETYW  497 (532)
Q Consensus       494 ~~~~  497 (532)
                      +.+-
T Consensus       111 ~~W~  114 (145)
T d1dvpa1         111 QTWA  114 (145)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9853