Citrus Sinensis ID: 009584

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-
MKNGFFCKLEPSFQFSNPAMEGATKWNPVCLKTPAEVRQIYSHMKHLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLSSRSINPDIQEMKEAEMLRQAAASVNIQEIKEFTYEPPNPDDIFSVFEDVNFGESNEREIEPSGAYSPASHASKMHTVSPEVNVINKDNLHRHSNAYVDQNGDIEEDESGWETVSHLEDQDSSCSPEGSAPSIKNRRDSNFSGSVMEWEDNGYEGTPITEISEVCSVPTKSLKKVSSIARLWRSGPNNGDNYKIITVDGTKGRLSVSNGRLSNGSLASLDRGSGNGGLSPSDLGQWSSPDSGNPHVTRGMKGCIEWPRGAQKNSLKAKLLEARMESQKVQLRQVLKQKI
cccccccccccccccccHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHcccccccccccHHHHHHHHccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccHHcHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHcc
ccccEEEEEcccccccccHHHHcccccccHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccHHcccccccccccHHHHHHHHHHHcccccccccccccccccccccccccEEEcccccHHccccccccccccccccccccccccccEEEEcHHccccccccccccccccccccccccccccccHHccccccccccccHHccccccccccHHHHHHHHHccccccccEEEEcccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccEcccccccccHHHHHHHHHHHHcHHHHHHHHHHccc
mkngffcklepsfqfsnpamegatkwnpvclktPAEVRQIYSHMKHLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLssrsinpdIQEMKEAEMLRQAAASVNIQEikeftyeppnpddifsvfedvnfgesnereiepsgayspashaskmhtvspevnvinkdnlhrhsnayvdqngdieedesgwetvshledqdsscspegsapsiknrrdsnfsgsvmewedngyegtpiteisevcsvptkslkKVSSIARLWrsgpnngdnykiitvdgtkgrlsvsngrlsngslasldrgsgngglspsdlgqwsspdsgnphvtrgmkgciewprgaqknSLKAKLLEARMESQKVQLRQVLKQKI
MKNGFFCKLEPSFQFSNPAMEGATKWNPVCLKTPAEVRQIYSHMKHLDQQVSAVSMVAALEAEVEQARTRIQeleterrsskkklehflrkvseekaawrsrehekirafIDDLKAEIsrerknrqrieivnsklvneladakvsaKRYMQDYekerkerelIEEVCDELakeigedkaevealkresmklreevdderKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLSSRSINPDIQEMKEAEMLRQAAASVNIQEIKEFTYEPPNPDDIFSVFEDVNFGESNEREIEPSGAYSPASHASKMHTVSPEVNVINKDNLHRHSNAYVDQNGDIEEDESGWETVSHLedqdsscspegsapsiknrrdsnfsGSVMEWEDNGYEGTPITEISEVCSVPTKSLKKVSSIArlwrsgpnngdnykIITVDGTKGRLSVSNGRLSNGSLASLDRGSGNGGLSPSDLGQWSSPDSGNPHVTRGMKGCIEWPRGAQKNSLKAKLLEARMESQKVQLRQVLKQKI
MKNGFFCKLEPSFQFSNPAMEGATKWNPVCLKTPAEVRQIYSHMKHLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYekerkerelieeVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLSSRSINPDIQEMKEAEMLRQAAASVNIQEIKEFTYEPPNPDDIFSVFEDVNFGESNEREIEPSGAYSPASHASKMHTVSPEVNVINKDNLHRHSNAYVDQNGDIEEDESGWETVSHLEDQDSSCSPEGSAPSIKNRRDSNFSGSVMEWEDNGYEGTPITEISEVCSVPTKSLKKVSSIARLWRSGPNNGDNYKIITVDGTKGRLSVSNGRLSNGSLASLDRGSGNGGLSPSDLGQWSSPDSGNPHVTRGMKGCIEWPRGAQKNSLKAKLLEARMESqkvqlrqvlkqkI
****FFCKLEPSFQFSNPAMEGATKWNPVCLKTPAEVRQIYSHMKHLDQQVSAVSMVAAL**********************************************IRAFIDD***************EIVNSKLVNEL*****************************************************************AEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFL*************************NIQEIKEFTY******DIFSVFEDV*****************************************************************************************************GYEGTPITEISEVCSVPTKSLKKVSSIARLWRSGPNNGDNYKIITVDG*****************************************************CIE**********************************
***************************************I************************E**************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************RQVLK***
MKNGFFCKLEPSFQFSNPAMEGATKWNPVCLKTPAEVRQIYSHMKHLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLSSRSINPDIQEMKEAEMLRQAAASVNIQEIKEFTYEPPNPDDIFSVFEDVNFGESNEREIEPSGAYSPASHASKMHTVSPEVNVINKDNLHRHSNAYVDQNGDIE****************************KNRRDSNFSGSVMEWEDNGYEGTPITEISEVCSVPTKSLKKVSSIARLWRSGPNNGDNYKIITVDGTKGRLSVSNGRLSNGSLASLDRGSGNGGLSPSDLGQWSSPDSGNPHVTRGMKGCIEWPRGAQKNSLKAKLLEARMESQKVQLRQVLKQKI
**NGFFCKLEPSFQFSNPAMEGATKWNPVCLKTPAEVRQIYSHMKHLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLSSRSINPDIQEMKEAEMLRQAAASVNIQEIKEFTYEPPNPDDIFSVFEDVNFG*********************MHTVSPEVNVINKDN******************ESGWETVSH**D******************************************S**CS***************WR**PNNGDNYKIITVDGTKGRLSVSN**********************************NPHVTRGMKGCIEWPRGAQKNSLKAKLLEARMESQKVQLRQVLKQKI
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MKNGFFCKLEPSFQFSNPAMEGATKWNPVCLKTPAEVRQIYSHMKHLDQQVSAVSMxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVSEEKAAWRSREHEKIRAFxxxxxxxxxxxxxxxxxxxxxNSKLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFLSSRSINPDIQEMKEAEMLRQAAASVNIQEIKEFTYEPPNPDDIFSVFEDVNFGESNEREIEPSGAYSPASHASKMHTVSPEVNVINKDNLHRHSNAYVDQNGDIEEDESGWETVSHLEDQDSSCSPEGSAPSIKNRRDSNFSGSVMEWEDNGYEGTPITEISEVCSVPTKSLKKVSSIARLWRSGPNNGDNYKIITVDGTKGRLSVSNGRLSNGSLASLDRGSGNGGLSPSDLGQWSSPDSGNPHVTRGMKGCIEWPRGAQKNSLKxxxxxxxxxxxxxxxxxxxxxKI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query531 2.2.26 [Sep-21-2011]
Q66GQ2623 Uncharacterized protein A no no 0.399 0.340 0.293 4e-20
>sp|Q66GQ2|Y5162_ARATH Uncharacterized protein At5g41620 OS=Arabidopsis thaliana GN=At5g41620 PE=1 SV=2 Back     alignment and function desciption
 Score =  100 bits (248), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 128/215 (59%), Gaps = 3/215 (1%)

Query: 31  LKTPAEVRQIYSHMKHLDQQ-VSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFL 89
           LKT  E+ ++ + +  L++Q VS +S++ AL+ EV  +R RI+EL   +++ + +L+  +
Sbjct: 193 LKTSTELLKVLNRIWSLEEQHVSNISLIKALKTEVAHSRVRIKELLRYQQADRHELDSVV 252

Query: 90  RKVSEEKAAWRSREHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRY 149
           ++++EEK   +++E E++ + +  ++  +  ERK R+R E ++ K+  EL++ K S    
Sbjct: 253 KQLAEEKLLSKNKEVERMSSAVQSVRKALEDERKLRKRSESLHRKMARELSEVKSSLSNC 312

Query: 150 MQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESM--KLREEVDDERKMLQMAEV 207
           +++ E+  K  +++E +CDE AK I   + E+  LK++++          ++ +L +AE 
Sbjct: 313 VKELERGSKSNKMMELLCDEFAKGIKSYEEEIHGLKKKNLDKDWAGRGGGDQLVLHIAES 372

Query: 208 WREERVQMKLVDAKVAVEQKYSQMNKLVAELEAFL 242
           W +ER+QM+L        +  S ++KL  E+E FL
Sbjct: 373 WLDERMQMRLEGGDTLNGKNRSVLDKLEVEIETFL 407

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query531
255583593 714 conserved hypothetical protein [Ricinus 0.990 0.736 0.806 0.0
225460985 717 PREDICTED: uncharacterized protein LOC10 0.994 0.736 0.754 0.0
356569802 699 PREDICTED: uncharacterized protein LOC10 0.988 0.751 0.737 0.0
356499392 691 PREDICTED: uncharacterized protein LOC10 0.988 0.759 0.733 0.0
356553569 690 PREDICTED: uncharacterized protein LOC10 0.988 0.760 0.729 0.0
356524256 699 PREDICTED: uncharacterized protein LOC10 0.979 0.743 0.735 0.0
297737432 673 unnamed protein product [Vitis vinifera] 0.913 0.720 0.701 0.0
297847412 729 hypothetical protein ARALYDRAFT_892003 [ 0.986 0.718 0.691 0.0
15223613 725 uncharacterized protein [Arabidopsis tha 0.986 0.722 0.686 0.0
224114457498 predicted protein [Populus trichocarpa] 0.934 0.995 0.729 0.0
>gi|255583593|ref|XP_002532552.1| conserved hypothetical protein [Ricinus communis] gi|223527707|gb|EEF29813.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  874 bits (2258), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/533 (80%), Positives = 473/533 (88%), Gaps = 7/533 (1%)

Query: 1   MKNGFFCKLEPSFQFSNPAMEGATKWNPVCLKTPAEVRQIYSHMKHLDQQVSAVSMVAAL 60
           MKN FFCK+EPSFQFSN AMEGATKW+PVCL+T  EVRQIYS MK LD QVSAVSMV+AL
Sbjct: 187 MKNRFFCKVEPSFQFSNTAMEGATKWDPVCLETIDEVRQIYSQMKRLDHQVSAVSMVSAL 246

Query: 61  EAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISR 120
           EAE+EQAR RIQELE ERR+SKKK+EHFL+KVSEE+ AWRSREHEKIRAFIDD+K ++SR
Sbjct: 247 EAELEQARARIQELEAERRTSKKKMEHFLKKVSEERVAWRSREHEKIRAFIDDIKGDLSR 306

Query: 121 ERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAE 180
           ERKNRQR+EIVNSKLVNELADAKVSAKR+MQDYEKERK RELIEEVCDELAKEIG+DKAE
Sbjct: 307 ERKNRQRLEIVNSKLVNELADAKVSAKRFMQDYEKERKARELIEEVCDELAKEIGQDKAE 366

Query: 181 VEALKRESMKLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEA 240
           VEA KRESMKLREEVD+ERKMLQMAEVWREERVQMKLVDAKVA+E KYSQMN+LVA+LE 
Sbjct: 367 VEAFKRESMKLREEVDEERKMLQMAEVWREERVQMKLVDAKVALEAKYSQMNRLVADLET 426

Query: 241 FLSSRSINPDIQEMKEAEMLRQAAASVNIQEIKEFTYEPPNPDDIFSVFEDVNFGESNER 300
           FL SR+  PD++EM+EAE L QAAASV+ Q++KEFTYEPPNPDDIFSVFE+VN GE NER
Sbjct: 427 FLRSRTATPDLKEMREAESLVQAAASVDFQDVKEFTYEPPNPDDIFSVFEEVNCGEPNER 486

Query: 301 EIEPSGAYSPASHASKMHTVSPEVNVINKDNLHRHSNAYVDQNGDIEEDESGWETVSHLE 360
           EIEP  AYSPASHASK+HTVSPE+NVINK+  HRHS+A+ DQNGDIEEDESGWETVSHLE
Sbjct: 487 EIEPCVAYSPASHASKIHTVSPEINVINKNGNHRHSDAFYDQNGDIEEDESGWETVSHLE 546

Query: 361 DQDSSCSPEGSAPSI--KNRRDSNFSGSVMEWEDNGYEGTPITEISEVCSVPTKSLKKVS 418
           DQ SS SPEGS PS+  KN RDSN SGS  EWE+N  + T ITEI+E+CSVP +  KKVS
Sbjct: 547 DQGSSYSPEGSVPSVNNKNHRDSNVSGSGTEWEENACDETSITEITELCSVPIRQYKKVS 606

Query: 419 SIARLWRSGPNNGDNYKIITVDGTKGRLSVSNGRLSNGSLASLDRGSGNGGLSPSDLGQW 478
           SIA+LWRSG   GDNYKII+VDG  GRL  SNGR SNG + S DRGSG GGLSP   GQW
Sbjct: 607 SIAKLWRSG---GDNYKIISVDGMNGRL--SNGRKSNGVIVSPDRGSGKGGLSPDLTGQW 661

Query: 479 SSPDSGNPHVTRGMKGCIEWPRGAQKNSLKAKLLEARMESQKVQLRQVLKQKI 531
           SSPDSGNPH+TRGMKGCIEWPRGAQKNSLKAKL+EARMESQKVQLR VLKQKI
Sbjct: 662 SSPDSGNPHITRGMKGCIEWPRGAQKNSLKAKLMEARMESQKVQLRHVLKQKI 714

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225460985|ref|XP_002280336.1| PREDICTED: uncharacterized protein LOC100255542 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356569802|ref|XP_003553085.1| PREDICTED: uncharacterized protein LOC100801304 [Glycine max] Back     alignment and taxonomy information
>gi|356499392|ref|XP_003518525.1| PREDICTED: uncharacterized protein LOC100799140 [Glycine max] Back     alignment and taxonomy information
>gi|356553569|ref|XP_003545127.1| PREDICTED: uncharacterized protein LOC100795388 [Glycine max] Back     alignment and taxonomy information
>gi|356524256|ref|XP_003530746.1| PREDICTED: uncharacterized protein LOC100795752 [Glycine max] Back     alignment and taxonomy information
>gi|297737432|emb|CBI26633.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297847412|ref|XP_002891587.1| hypothetical protein ARALYDRAFT_892003 [Arabidopsis lyrata subsp. lyrata] gi|297337429|gb|EFH67846.1| hypothetical protein ARALYDRAFT_892003 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15223613|ref|NP_175481.1| uncharacterized protein [Arabidopsis thaliana] gi|9454546|gb|AAF87869.1|AC012561_2 Unknown protein [Arabidopsis thaliana] gi|12322324|gb|AAG51180.1|AC079279_1 unknown protein [Arabidopsis thaliana] gi|332194455|gb|AEE32576.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224114457|ref|XP_002316766.1| predicted protein [Populus trichocarpa] gi|222859831|gb|EEE97378.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query531
TAIR|locus:2007996725 AT1G50660 [Arabidopsis thalian 0.962 0.704 0.663 4.8e-181
TAIR|locus:2092319673 AT3G20350 [Arabidopsis thalian 0.941 0.742 0.545 4.7e-135
TAIR|locus:2080792622 AT3G11590 [Arabidopsis thalian 0.661 0.564 0.308 7.5e-41
TAIR|locus:2160477623 AT5G41620 "AT5G41620" [Arabido 0.713 0.608 0.250 5.4e-21
TAIR|locus:2027402247 AT1G11690 "AT1G11690" [Arabido 0.299 0.643 0.344 9.3e-21
TAIR|locus:2024568593 AT1G64180 "AT1G64180" [Arabido 0.689 0.617 0.245 1.5e-18
TAIR|locus:2176387481 AT5G22310 "AT5G22310" [Arabido 0.320 0.353 0.336 6.8e-15
TAIR|locus:2062877468 AT2G46250 "AT2G46250" [Arabido 0.555 0.630 0.256 1.1e-12
UNIPROTKB|Q8NEH6495 MNS1 "Meiosis-specific nuclear 0.429 0.460 0.220 3.2e-07
UNIPROTKB|F1PWW7495 MNS1 "Uncharacterized protein" 0.429 0.460 0.212 6.9e-07
TAIR|locus:2007996 AT1G50660 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1757 (623.6 bits), Expect = 4.8e-181, P = 4.8e-181
 Identities = 355/535 (66%), Positives = 428/535 (80%)

Query:     2 KNGFFCKLEPSFQFSNPAMEGATKWNPVCLKTPAEVRQIYSHMKHLDQQVSAVSMVAALE 61
             KNGF CKLEPS  F + AMEGATKW+PVCL T  EV QIYS+MK +DQQV+AVS+V++LE
Sbjct:   184 KNGFLCKLEPSMPFPHSAMEGATKWDPVCLDTMEEVHQIYSNMKRIDQQVNAVSLVSSLE 243

Query:    62 AEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDDLKAEISRE 121
             AE+E+A  RI++LE+E+RS KKKLE FLRKVSEE+AAWRSREHEK+RA IDD+K +++RE
Sbjct:   244 AELEEAHARIEDLESEKRSHKKKLEQFLRKVSEERAAWRSREHEKVRAIIDDMKTDMNRE 303

Query:   122 RKNRQRIEIVNSKLVNELADAKVSAKRYMQDYXXXXXXXXXXXXVCDELAKEIGEDKAEV 181
             +K RQR+EIVN KLVNELAD+K++ KRYMQDY            VCDELAKEIGEDKAE+
Sbjct:   304 KKTRQRLEIVNHKLVNELADSKLAVKRYMQDYEKERKARELIEEVCDELAKEIGEDKAEI 363

Query:   182 EALKRESMKLREEVDDERKMLQMAEVWREERVQMKLVDAKVAVEQKYSQMNKLVAELEAF 241
             EALKRESM LREEVDDER+MLQMAEVWREERVQMKL+DAKVA+E++YSQMNKLV +LE+F
Sbjct:   364 EALKRESMSLREEVDDERRMLQMAEVWREERVQMKLIDAKVALEERYSQMNKLVGDLESF 423

Query:   242 LSSRSINPDIQEMKEAEMLRQAAASVNIQEIKEFTYEPPNPDDIFSVFEDVNFGESNERE 301
             L SR I  D++E++EAE+LR+ AASVNIQEIKEFTY P NPDDI++VFE++N GE+++RE
Sbjct:   424 LRSRDIVTDVKEVREAELLRETAASVNIQEIKEFTYVPANPDDIYAVFEEMNLGEAHDRE 483

Query:   302 IEPSGAYSPASHASKMHTVSPEVNVINKDNLHRHSNAYVDQNGDIEEDESGWETVSHLED 361
             +E S AYSP SH SK+HTVS + N++NK    RHS+AY  QNGDIEED+SGWETVSHLE+
Sbjct:   484 MEKSVAYSPISHDSKVHTVSLDANMMNKKG--RHSDAYTHQNGDIEEDDSGWETVSHLEE 541

Query:   362 QDSSCSPEGSAPSIKNR----RDSNFSGSVME-----WEDNGYEGTPITEISEVCSVPTK 412
             Q SS SP+GS PS+ N+    R SN S    E     W+D     TP TEISEVCS+P +
Sbjct:   542 QGSSYSPDGSIPSVNNKNHNHRHSNASSGGTESLGKVWDDTM---TPTTEISEVCSIPRR 598

Query:   413 SLKKVSSIARLWRS-GPNNGD---NYKIITVDGTKGRLSVSNGRLSNGSLASLDRGSGNG 468
             S KKVSSIA+LWRS G +NGD   NYK+I+++G  G   VSNGR S+  + S DR S  G
Sbjct:   599 SSKKVSSIAKLWRSTGASNGDRDSNYKVISMEGMNGG-RVSNGRKSSAGMVSPDRVSSKG 657

Query:   469 GLSPS-DL-GQW-SSPDSGN-PHVTRG-MKGCIEWPRGAQKNSLKAKLLEARMES 518
             G SP  DL GQW SSP+S N PHV RG MKGCIEWPRGAQK+SLK+KL+EAR+ES
Sbjct:   658 GFSPMMDLVGQWNSSPESANHPHVNRGGMKGCIEWPRGAQKSSLKSKLIEARIES 712
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0007155 "cell adhesion" evidence=RCA
GO:0010090 "trichome morphogenesis" evidence=RCA
GO:0045010 "actin nucleation" evidence=RCA
GO:0048765 "root hair cell differentiation" evidence=RCA
GO:0071555 "cell wall organization" evidence=RCA
TAIR|locus:2092319 AT3G20350 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080792 AT3G11590 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2160477 AT5G41620 "AT5G41620" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027402 AT1G11690 "AT1G11690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024568 AT1G64180 "AT1G64180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2176387 AT5G22310 "AT5G22310" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062877 AT2G46250 "AT2G46250" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q8NEH6 MNS1 "Meiosis-specific nuclear structural protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PWW7 MNS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00027328001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (695 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query531
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-08
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 3e-08
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 5e-08
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 6e-08
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-07
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 4e-07
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 4e-07
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 8e-07
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 4e-06
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-05
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 2e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 3e-05
PRK03918 880 PRK03918, PRK03918, chromosome segregation protein 1e-04
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-04
PRK02224 880 PRK02224, PRK02224, chromosome segregation protein 3e-04
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 4e-04
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 4e-04
TIGR01843423 TIGR01843, type_I_hlyD, type I secretion membrane 4e-04
COG2433652 COG2433, COG2433, Uncharacterized conserved protei 4e-04
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 6e-04
PRK10966407 PRK10966, PRK10966, exonuclease subunit SbcD; Prov 6e-04
COG4942420 COG4942, COG4942, Membrane-bound metallopeptidase 7e-04
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.002
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.002
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 0.002
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 0.002
TIGR026801353 TIGR02680, TIGR02680, TIGR02680 family protein 0.002
pfam13166713 pfam13166, AAA_13, AAA domain 0.003
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.004
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information 
 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 63/272 (23%), Positives = 121/272 (44%), Gaps = 24/272 (8%)

Query: 36  EVRQIYSHMKHLDQQVSAVSM--------VAALEAEVEQARTRIQELETER---RSSKKK 84
           E+R +   ++ L +Q+  +          +AALE E+EQ ++R++ELE E        ++
Sbjct: 696 ELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEE 755

Query: 85  LEHFLRKVSEEKAAWRSR------EHEKIRAFIDDLKAEISRERKNRQRIEIVNSKLVNE 138
           L+  L ++ EE  +          E E++      L+ E+    +  +  E     L  E
Sbjct: 756 LQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERE 815

Query: 139 LADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDE 198
           L   +   +R  Q+ E+  +E E +EE  DEL +E+ E + E+E LK E  +L  E ++ 
Sbjct: 816 LESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEEL 875

Query: 199 RKMLQMAEVWREER------VQMKLVDAKVAVEQKYSQMNKLVAELEAFLS-SRSINPDI 251
              L+  E  +EE       ++ +L + K  +E+   ++ +L A+LE        +  ++
Sbjct: 876 EDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEEL 935

Query: 252 QEMKEAEMLRQAAASVNIQEIKEFTYEPPNPD 283
           +E  E  +  +    +   E +     P N  
Sbjct: 936 EEEYEDTLETELEREIERLEEEIEALGPVNLR 967

Length = 1163
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|182871 PRK10966, PRK10966, exonuclease subunit SbcD; Provisional Back     alignment and domain information
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein Back     alignment and domain information
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 531
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 97.81
KOG0977546 consensus Nuclear envelope protein lamin, intermed 97.5
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 97.48
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 96.7
KOG0971 1243 consensus Microtubule-associated protein dynactin 96.57
PF13851201 GAS: Growth-arrest specific micro-tubule binding 96.51
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 96.42
TIGR006061311 rad50 rad50. This family is based on the phylogeno 96.38
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 96.3
KOG0996 1293 consensus Structural maintenance of chromosome pro 96.29
COG11961163 Smc Chromosome segregation ATPases [Cell division 96.16
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 96.1
PF00038312 Filament: Intermediate filament protein; InterPro: 96.02
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 95.75
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 95.69
PF00038312 Filament: Intermediate filament protein; InterPro: 95.68
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 95.15
KOG09331174 consensus Structural maintenance of chromosome pro 95.02
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 94.97
KOG0977546 consensus Nuclear envelope protein lamin, intermed 94.75
PRK09039343 hypothetical protein; Validated 94.73
PF05701522 WEMBL: Weak chloroplast movement under blue light; 94.66
PHA02562562 46 endonuclease subunit; Provisional 93.83
PF05701522 WEMBL: Weak chloroplast movement under blue light; 93.78
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 93.34
PRK02224880 chromosome segregation protein; Provisional 93.07
KOG0996 1293 consensus Structural maintenance of chromosome pro 92.52
PF09727192 CortBP2: Cortactin-binding protein-2; InterPro: IP 92.38
KOG0964 1200 consensus Structural maintenance of chromosome pro 91.89
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 91.87
KOG4593716 consensus Mitotic checkpoint protein MAD1 [Cell cy 91.31
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 91.02
PRK11637428 AmiB activator; Provisional 90.48
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 90.25
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 89.75
PF09730 717 BicD: Microtubule-associated protein Bicaudal-D; I 89.35
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 89.32
PF07798177 DUF1640: Protein of unknown function (DUF1640); In 89.3
KOG01631259 consensus Myosin class VI heavy chain [Cytoskeleto 88.8
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 88.72
PF10174 775 Cast: RIM-binding protein of the cytomatrix active 88.69
PF121281201 DUF3584: Protein of unknown function (DUF3584); In 88.37
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 88.31
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 87.35
PF04111314 APG6: Autophagy protein Apg6; InterPro: IPR007243 86.99
KOG0963629 consensus Transcription factor/CCAAT displacement 86.74
PF07798177 DUF1640: Protein of unknown function (DUF1640); In 86.72
TIGR006061311 rad50 rad50. This family is based on the phylogeno 86.57
KOG1103561 consensus Predicted coiled-coil protein [Function 86.55
KOG09331174 consensus Structural maintenance of chromosome pro 86.51
KOG0971 1243 consensus Microtubule-associated protein dynactin 86.29
TIGR01843423 type_I_hlyD type I secretion membrane fusion prote 86.0
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 85.7
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 85.59
KOG0982502 consensus Centrosomal protein Nuf [Cell cycle cont 84.3
PF09728309 Taxilin: Myosin-like coiled-coil protein; InterPro 83.72
PF10186302 Atg14: UV radiation resistance protein and autopha 83.22
KOG0239670 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] 82.55
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 82.38
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 81.79
cd07658239 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin 81.66
KOG4787852 consensus Uncharacterized conserved protein [Funct 81.59
KOG01631259 consensus Myosin class VI heavy chain [Cytoskeleto 81.42
PRK04863 1486 mukB cell division protein MukB; Provisional 81.17
PRK03918 880 chromosome segregation protein; Provisional 81.04
PF01576859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 80.55
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information 
Probab=97.81  E-value=0.086  Score=58.61  Aligned_cols=117  Identities=21%  Similarity=0.281  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhc----cHHHHHHHHHhhHHHHhhh-hhhHHH
Q 009584          128 IEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIE-EVCDELAKEIGE----DKAEVEALKRESMKLREEV-DDERKM  201 (531)
Q Consensus       128 ~E~ln~KL~~ELae~Kss~~~a~kelE~ERkaRellE-~vCdELAkeI~e----dkaEVe~lKres~k~reE~-eeER~M  201 (531)
                      ++.-.-.|++||+++.+.=.+.+.||-.-|-.-.=|. .+|| .+-.+++    ..+|...|.+.....++++ +-.+++
T Consensus       302 Sqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad-~~l~lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el  380 (546)
T PF07888_consen  302 SQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLAD-ASLELKEGRSQWAQEKQALQHSAEADKDEIEKLSREL  380 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            4445566788888888777777777776664322222 2232 2223333    3334444444444444455 334556


Q ss_pred             HHHHHhhHHHhhh----------------hhhhhhhhhhHHhhHHHHHHHHHHHHHHhhc
Q 009584          202 LQMAEVWREERVQ----------------MKLVDAKVAVEQKYSQMNKLVAELEAFLSSR  245 (531)
Q Consensus       202 LqmAEvWREERVQ----------------MKL~dAk~~leeK~s~ldkL~~elE~FL~sk  245 (531)
                      .++++...|||.+                +.|+|++-.|.|+.+.+..++-|=|-+...+
T Consensus       381 ~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~Ek  440 (546)
T PF07888_consen  381 QMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEK  440 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6667766677664                4566666666666666666666666665554

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1) Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins Back     alignment and domain information
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] Back     alignment and domain information
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>KOG1103 consensus Predicted coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed Back     alignment and domain information
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking Back     alignment and domain information
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN) Back     alignment and domain information
>KOG4787 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query531
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-11
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-10
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 9e-07
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 7e-10
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 4e-08
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 5e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-06
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 6e-04
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
 Score = 65.2 bits (159), Expect = 3e-11
 Identities = 33/206 (16%), Positives = 82/206 (39%), Gaps = 15/206 (7%)

Query: 49   QQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVS--EEKAAWRSREHEK 106
            ++V+A   +  +E ++     +  +L  ER+  ++++      ++  EEKA   ++   K
Sbjct: 977  EKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNK 1036

Query: 107  IRAFIDDLKAEISRERKNRQRIEIVNSKLVNELADA-------KVSAKRYMQDYEKERKE 159
              + I +L+  + +E K+RQ +E +  KL  E +D        +           K+ +E
Sbjct: 1037 HESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEE 1096

Query: 160  RELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVDDERKMLQMAEVWRE------ERV 213
             +      ++   +      ++  L+     L+E+++ E+     AE  +       E +
Sbjct: 1097 LQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEAL 1156

Query: 214  QMKLVDAKVAVEQKYSQMNKLVAELE 239
            + +L D       +         + +
Sbjct: 1157 KTELEDTLDTTATQQELRGSDYKDDD 1182
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Length = 256 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query531
2ocy_A154 RAB guanine nucleotide exchange factor SEC2; RAB, 97.27
2eqb_B97 RAB guanine nucleotide exchange factor SEC2; coile 96.26
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 96.17
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 95.03
2e7s_A135 RAB guanine nucleotide exchange factor SEC2; coile 94.58
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 94.09
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 93.47
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 93.34
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 91.77
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 91.76
3u59_A101 Tropomyosin beta chain; muscle contraction, actin, 91.61
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 91.58
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 91.29
3u1c_A101 Tropomyosin alpha-1 chain; anti-parallel coiled co 90.39
2hg7_A110 Phage-like element PBSX protein XKDW; dimer, GFT s 89.41
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 83.52
2w6b_A56 RHO guanine nucleotide exchange factor 7; X-RAY cr 83.4
2w6b_A56 RHO guanine nucleotide exchange factor 7; X-RAY cr 80.78
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 80.6
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure
Probab=97.27  E-value=0.016  Score=53.82  Aligned_cols=129  Identities=16%  Similarity=0.221  Sum_probs=97.9

Q ss_pred             HHHHHhhhhcc-cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHH
Q 009584           35 AEVRQIYSHMK-HLDQQVSAVSMVAALEAEVEQARTRIQELETERRSSKKKLEHFLRKVSEEKAAWRSREHEKIRAFIDD  113 (531)
Q Consensus        35 ~el~~v~~~~~-leeq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~k~eie~l~KqlaEEK~awKskE~eki~a~i~s  113 (531)
                      +-|..-+|+.- |+|.       +..++.+|..++.+|+.|+..+..    ++.+...+            .-+.+-+..
T Consensus         6 tKLI~Ain~qs~LeD~-------L~~~R~el~~~~~ri~~lE~~r~~----~~~l~~~~------------~~~~~e~~~   62 (154)
T 2ocy_A            6 TQLIESVDKQSHLEEQ-------LNKSLKTIASQKAAIENYNQLKED----YNTLKREL------------SDRDDEVKR   62 (154)
T ss_dssp             HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHTTHHHHHH----HHHHHTHH------------HHHHHHHHH
T ss_pred             HHHHHHHHhhccHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH------------hhhhHHHHH
Confidence            45666677766 6666       678899999999999999986543    33333221            235666777


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHH
Q 009584          114 LKAEISRERKNRQRIEIVNSKLVNELADAKVS-AKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKR  186 (531)
Q Consensus       114 lk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss-~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKr  186 (531)
                      |..+|..|+..|..+|.-..++-.||-+.-.| |..|=+=.-.+|+.|..+|.=-+.|-+.+++-+.-++.|-.
T Consensus        63 L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~  136 (154)
T 2ocy_A           63 LREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTL  136 (154)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999997655 55555555678999999998888888888877666665443
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A Back     alignment and structure
>2hg7_A Phage-like element PBSX protein XKDW; dimer, GFT structural genomics, PSI, protein structure initiative; NMR {Bacillus subtilis} SCOP: d.186.2.1 Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus} Back     alignment and structure
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query531
d2efla1288 Formin-binding protein 1, FNBP1 {Human (Homo sapie 93.34
d1h7ca_103 Tubulin chaperone cofactor A {Human (Homo sapiens) 81.7
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: Formin-binding protein 1, FNBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.34  E-value=2.3  Score=36.98  Aligned_cols=89  Identities=16%  Similarity=0.223  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhH
Q 009584          110 FIDDLKAEISRERKNRQRIEIVNSKLVNELADAKVSAKRYMQDYEKERKERELIEEVCDELAKEIGEDKAEVEALKRESM  189 (531)
Q Consensus       110 ~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELae~Kss~~~a~kelE~ERkaRellE~vCdELAkeI~edkaEVe~lKres~  189 (531)
                      +++.++.-+.+-++.|+.+...-.|+.+++......+.++.+.|..--+.-+-+...+..+.....--+.+++.++.+..
T Consensus        98 i~~~l~~~~~~~~~~~K~~~~~~~k~~k~~~~~~~~l~k~k~~Y~~~~~e~e~~~~~~~~~~~~~~~~~~~~~K~~~k~~  177 (288)
T d2efla1          98 IIVDLARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADINVTKADVEKARQQAQ  177 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHHH
Confidence            34555555666677888888888899999988888888888888766555555555555555566666778888877777


Q ss_pred             HHHhhhhhh
Q 009584          190 KLREEVDDE  198 (531)
Q Consensus       190 k~reE~eeE  198 (531)
                      +....++.-
T Consensus       178 ~~~~~~~~a  186 (288)
T d2efla1         178 IRHQMAEDS  186 (288)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            776666543
>d1h7ca_ a.7.5.1 (A:) Tubulin chaperone cofactor A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure