Citrus Sinensis ID: 009589

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-
MFRSINVTSRIFERQIRTPAPGTSVHCARRFYENIVPSFTVYDIECPDHSFRKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLYDDLLAIVSLRYQTIHILQVRDLGNLVDVRTIGSFCREDDELFLISNSQSLATSERSRLNPFPGNQVGNGHNQVNQDDSFLSGIKQRLLSFIFQGMWNEETDQAMSLKKKFFFHFQDYVDLIIWKVQFLDRHHLLIKFGSVDGGVSRNVDHHPAFFAVYNMETTEVVAFYQNSAEELYFLFEKFCDHFHATSRNSLHMNFISSHSNNVYALEQLRSIKNKGGSFSQFVKKMMASLPFGCQSQSPSPYFDQSLFRYDEKLISATDRHRQSTDHPIKFISRRPPYTLKFKIKPGPEAGTIDGRTKRISSFLFHPFLPLALSIQQTLFLQPSVVNIHFRR
cccHHHHHHHHHHcccccccccccHHHccccccccccccEEEcccccccEEEEEcccccEEEEEEccccEEEEEEEcccccccccccccccccccHHHHHHHHHHccEEEEEccccEEEEEEEEEEEEccEEEEEEEcccccccccccccccccccccccEEEEEEEccccEEEEEEEEcccEEEEcccccEEEEccHHHHHHccEEEEEEEEEEccccEEEEEEEEcccccccHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHEEEEEccccEEEEEEEccccccccccccccEEEEEEEEcccEEEEEEcccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEEcccccEEEEEEEcccccccccccccEEEEEEEcccccEEEEEEEEcccccEEEEEEEEc
ccccHHHHHHHHHHHcccccccccHHHHHHHHHccccccEEEEcccccEEEEEEcccccEEEEEEccccEEEEEEEcccccccccccccccccHHHHHHHHHHHHHEEEEEEcccccEEEEEEEEEEccccEEEEEEccccccccccccccccccccHccEEEEEEEccccEEEccEEccccEEEEEccccEEEHccEEEEEEEEEEEEEEEEEccccEEEEEEEccccccccHHHHHHcccHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccccEEEEEccccccEEEEEEEccccEEEEEEcccHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccccccHHcccccccEcccccccccccccEEEEEcccccEEEEEEEcccccccccccccEEEEEEEcccccEEEEEEHccccccEEEEEEEcc
MFRSINVTSRIFErqirtpapgtsvhcarrfyenivpsftvydiecpdhsfrkftddgQYLISFSRNhqdlivyrpmwlsfsckeedccrhdlppkakRFESFFTQLYSVTLASCNELICKDFflsmegnqfglfatstaqihdapttgraiqgvpfiEKITFHLLrledgvvldekVFHNDFINLAHNMGVFLYDDLLAIVSLRYQTIHILQVRDLGNLVDVRTigsfcreddeLFLISNSQslatsersrlnpfpgnqvgnghnqvnqddsfLSGIKQRLLSFIFQGMWNEETDQAMSLKKKFFFHFQDYVDLIIWKVQFLDRHHLLIKfgsvdggvsrnvdhhpAFFAVYNMETTEVVAFYQNSAEELYFLFEKFCdhfhatsrnsLHMNFISSHSNNVYALEQLRSIKNKGGSFSQFVKKMMaslpfgcqsqspspyfdqslfrydeklisatdrhrqstdhpikfisrrppytlkfkikpgpeagtidgrtkrissflfhpflplALSIQqtlflqpsvvnihfrr
mfrsinvtsriferqirtpapgtsvhCARRFYENIVPSFTVYDIECPDHSFRKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLYDDLLAIVSLRYQTIHIlqvrdlgnlVDVRTIGSFCREDDELFLISNSQSLATSERSRLNPFPGNQVGNGHNQVNQDDSFLSGIKQRLLSFIFQGMWNEETDQAMSLKKKFFFHFQDYVDLIIWKVQFLDRHHLLIKFGSVDGGVSRNVDHHPAFFAVYNMETTEVVAFYQNSAEELYFLFEKFCDHFHATSRNSLHMNFISSHSNNVYALEQLRSIKNKGGSFSQFVKKMMASLPFGCQSQSPSPYFDQSLFRYDEKLISAtdrhrqstdhpikfisrrppytlkfkikpgpeagtIDGRTKRISSFLFHPFLPLALSIQqtlflqpsVVNIHFRR
MFRSINVTSRIFERQIRTPAPGTSVHCARRFYENIVPSFTVYDIECPDHSFRKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLYDDLLAIVSLRYQTIHILQVRDLGNLVDVRTIGSFCREDDELFLISNSQSLATSERSRLNPFPgnqvgnghnqvnqDDSFLSGIKQRLLSFIFQGMWNEETDQAMSLKKKFFFHFQDYVDLIIWKVQFLDRHHLLIKFGSVDGGVSRNVDHHPAFFAVYNMETTEVVAFYQNSAEELYFLFEKFCDHFHATSRNSLHMNFISSHSNNVYALEQLRSIKNKGGSFSQFVKKMMASLPFGCQSQSPSPYFDQSLFRYDEKLISATDRHRQSTDHPIKFISRRPPYTLKFKIKPGPEAGTIDGRTKRISSFLFHPFLPLALSIQQTLFLQPSVVNIHFRR
*********RIFERQIRTPAPGTSVHCARRFYENIVPSFTVYDIECPDHSFRKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLYDDLLAIVSLRYQTIHILQVRDLGNLVDVRTIGSFCREDDELFLIS*********************************FLSGIKQRLLSFIFQGMWNEETDQAMSLKKKFFFHFQDYVDLIIWKVQFLDRHHLLIKFGSVDGGVSRNVDHHPAFFAVYNMETTEVVAFYQNSAEELYFLFEKFCDHFHATSRNSLHMNFISSHSNNVYALEQLRSIKNKGGSFSQFVKKMMASLPFGC*******YFDQSLFRYDEKLI*************IKFISRRPPYTLKFKIKPGPEAGTIDGRTKRISSFLFHPFLPLALSIQQTLFLQPSVVNIHF**
***SINVTSRIFERQI*******SVHCARRFYENIVPSFTVYDIECPDHSFRKFTDDGQYLISFSRNHQDLIVYRPMWLSFS***************KRFESFFTQLYSVTLASCNELICKDFFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLYDDLLAIVSLRYQTIHILQVRDLGNLVDVRTIGSFCREDDELFLISNSQS****************************SFLSGIKQRLLSFIFQGMW***********KKFFFHFQDYVDLIIWKVQFLDRHHLLIKFG*************PAFFAVYNMETTEVVAFYQNSAEELYFLFEKFCDHFHATSRNSLHMNFISSHSNNVYALEQLRSIKNKGGSFSQFVKKMMASLPFGCQSQSPSPYFDQSLFRYDEKLISATDRHRQSTDHPIKFISRRPPYTLKFK****************ISSFLFHPFLPLALSIQQTLFLQPSVVNIHFRR
MFRSINVTSRIFERQIRTPAPGTSVHCARRFYENIVPSFTVYDIECPDHSFRKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLYDDLLAIVSLRYQTIHILQVRDLGNLVDVRTIGSFCREDDELFLISNSQSLATSERSRLNPFPGNQVGNGHNQVNQDDSFLSGIKQRLLSFIFQGMWNEETDQAMSLKKKFFFHFQDYVDLIIWKVQFLDRHHLLIKFGSVDGGVSRNVDHHPAFFAVYNMETTEVVAFYQNSAEELYFLFEKFCDHFHATSRNSLHMNFISSHSNNVYALEQLRSIKNKGGSFSQFVKKMMASLPFGCQSQSPSPYFDQSLFRYDEKLISATDRHRQSTDHPIKFISRRPPYTLKFKIKPGPEAGTIDGRTKRISSFLFHPFLPLALSIQQTLFLQPSVVNIHFRR
*FRSINVTSRIFERQIRTPAPGTSVHCARRFYENIVPSFTVYDIECPDHSFRKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLYDDLLAIVSLRYQTIHILQVRDLGNLVDVRTIGSFCREDDELFLISNS****************************DDSFLSGIKQRLLSFIFQGMWNEETDQAMSLKKKFFFHFQDYVDLIIWKVQFLDRHHLLIKFGSVDGGVSRNVDHHPAFFAVYNMETTEVVAFYQNSAEELYFLFEKFCDHFHATSRNSLHMNFISSHSNNVYALEQLRSIKNKGGSFSQFVKKMMASLPFGCQSQSPSPYFDQSLFRYDEKLISATDRHRQSTDHPIKFISRRPPYTLKFKIKPGPEAGTIDGRTKRISSFLFHPFLPLALSIQQTLFLQPSVVNIHFRR
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MFRSINVTSRIFERQIRTPAPGTSVHCARRFYENIVPSFTVYDIECPDHSFRKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLYDDLLAIVSLRYQTIHILQVRDLGNLVDVRTIGSFCREDDELFLISNSQSLATSERSRLNPFPGNQVGNGHNQVNQDDSFLSGIKQRLLSFIFQGMWNEETDQAMSLKKKFFFHFQDYVDLIIWKVQFLDRHHLLIKFGSVDGGVSRNVDHHPAFFAVYNMETTEVVAFYQNSAEELYFLFEKFCDHFHATSRNSLHMNFISSHSNNVYALEQLRSIKNKGGSFSQFVKKMMASLPFGCQSQSPSPYFDQSLFRYDEKLISATDRHRQSTDHPIKFISRRPPYTLKFKIKPGPEAGTIDGRTKRISSFLFHPFLPLALSIQQTLFLQPSVVNIHFRR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query531 2.2.26 [Sep-21-2011]
Q9ZNU6523 Light-mediated developmen N/A no 0.975 0.990 0.781 0.0
P48732543 Light-mediated developmen yes no 0.998 0.976 0.705 0.0
Q9D0A0550 DET1 homolog OS=Mus muscu yes no 0.939 0.907 0.336 1e-73
Q7L5Y6550 DET1 homolog OS=Homo sapi yes no 0.939 0.907 0.336 2e-73
>sp|Q9ZNU6|DET1_SOLLC Light-mediated development protein DET1 OS=Solanum lycopersicum GN=DET1 PE=1 SV=1 Back     alignment and function desciption
 Score =  864 bits (2232), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/536 (78%), Positives = 464/536 (86%), Gaps = 18/536 (3%)

Query: 1   MFRSINVTSRIFERQIRTPAPGTSVHCARRFYENIVPSFTVYDIECPDHSFRKFTDDGQY 60
           MF++ NVT+R+FERQI TPAPGTS+H ARRFYEN+VPS+T+YD+ECPDHSFRKFTDDG Y
Sbjct: 1   MFKTNNVTARLFERQICTPAPGTSIHRARRFYENVVPSYTIYDVECPDHSFRKFTDDGLY 60

Query: 61  LISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELIC 120
            +SFSRNHQDL+VYRP WL+FSCKEEDC  HDLP KA++FESFFTQLYSVTLAS  ELIC
Sbjct: 61  FVSFSRNHQDLVVYRPTWLTFSCKEEDCDTHDLPLKARKFESFFTQLYSVTLASSGELIC 120

Query: 121 KDFFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFH 180
           KDFFL ME NQFGLFATSTAQIHDAP TG AIQGVP +EKITFHLLRL DG +LDE+VFH
Sbjct: 121 KDFFLYMESNQFGLFATSTAQIHDAPPTGGAIQGVPSVEKITFHLLRLVDGAILDERVFH 180

Query: 181 NDFINLAHNMGVFLYDDLLAIVSLRYQTIHILQVRDLGNLVDVRTIGSFCREDDELFLIS 240
           ND++NLAH++G FLYDDLLAIVSLRYQ IHILQ+RD G+LVDVR IG FCREDDELFL S
Sbjct: 181 NDYVNLAHSIGAFLYDDLLAIVSLRYQRIHILQIRDSGDLVDVRAIGEFCREDDELFLNS 240

Query: 241 NSQSLATSERSRLNPFPGNQVGNG--HNQVNQDDSFLSGIKQRLLSFIFQGMWNEETDQA 298
           NSQ L             N VGNG  H+    + SFLSGIKQRLLS+IF+G+WN E DQ 
Sbjct: 241 NSQVLV------------NHVGNGFHHSLPQSETSFLSGIKQRLLSYIFRGIWN-EADQT 287

Query: 299 M---SLKKKFFFHFQDYVDLIIWKVQFLDRHHLLIKFGSVDGGVSRNVDHHPAFFAVYNM 355
           M    LKKKF+FHFQDY+DLIIWKVQFLDRHHLLIKFGSVDGGVSRN D HP+FFAVYNM
Sbjct: 288 MRVQCLKKKFYFHFQDYIDLIIWKVQFLDRHHLLIKFGSVDGGVSRNADIHPSFFAVYNM 347

Query: 356 ETTEVVAFYQNSAEELYFLFEKFCDHFHATSRNSLHMNFISSHSNNVYALEQLRSIKNKG 415
           ETTE+VAFYQNSA+ELYFLFE F DHFH +S++SLHMNF+SSHSNN++ALEQLR  KNK 
Sbjct: 348 ETTEIVAFYQNSADELYFLFELFSDHFHVSSKSSLHMNFMSSHSNNIHALEQLRCTKNKA 407

Query: 416 GSFSQFVKKMMASLPFGCQSQSPSPYFDQSLFRYDEKLISATDRHRQSTDHPIKFISRRP 475
            +FSQFVKKMMASLP  CQSQSPSPYFDQSLFR+DEKLISA DRHRQSTDHPIKFISRR 
Sbjct: 408 TNFSQFVKKMMASLPCSCQSQSPSPYFDQSLFRFDEKLISAIDRHRQSTDHPIKFISRRQ 467

Query: 476 PYTLKFKIKPGPEAGTIDGRTKRISSFLFHPFLPLALSIQQTLFLQPSVVNIHFRR 531
           P  LKFK+KPGPEAG+ DGRTK+I SFLFHP LPLALS+QQTLFLQ SVVNIHFRR
Sbjct: 468 PNILKFKMKPGPEAGSTDGRTKKICSFLFHPILPLALSVQQTLFLQASVVNIHFRR 523
Component of light signal transduction machinery. Involved in fruit pigmentation and fruit nutritional quality. Acts as a negative regulator of fruit pigmentation. Probably acts by participating in the CDD complex, a complex probably required to regulate the activity of ubiquitin conjugating enzymes. Repression of photomorphogenesis is probably mediated by ubiquitination and subsequent degradation of photomorphogenesis-promoting factors such as HY5.
Solanum lycopersicum (taxid: 4081)
>sp|P48732|DET1_ARATH Light-mediated development protein DET1 OS=Arabidopsis thaliana GN=DET1 PE=1 SV=2 Back     alignment and function description
>sp|Q9D0A0|DET1_MOUSE DET1 homolog OS=Mus musculus GN=Det1 PE=2 SV=2 Back     alignment and function description
>sp|Q7L5Y6|DET1_HUMAN DET1 homolog OS=Homo sapiens GN=DET1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query531
356497391536 PREDICTED: light-mediated development pr 1.0 0.990 0.798 0.0
296089049531 unnamed protein product [Vitis vinifera] 0.990 0.990 0.811 0.0
356497389526 PREDICTED: light-mediated development pr 0.981 0.990 0.794 0.0
28439620524 deetiolated 1-like protein [Solanum tube 0.977 0.990 0.796 0.0
224127041530 predicted protein [Populus trichocarpa] 0.986 0.988 0.805 0.0
356538976526 PREDICTED: light-mediated development pr 0.981 0.990 0.791 0.0
357481305549 Light-mediated development protein DET1 0.996 0.963 0.773 0.0
359489353510 PREDICTED: light-mediated development pr 0.954 0.994 0.797 0.0
350534582523 light-mediated development protein DET1 0.975 0.990 0.781 0.0
388512103587 unknown [Medicago truncatula] 0.964 0.872 0.781 0.0
>gi|356497391|ref|XP_003517544.1| PREDICTED: light-mediated development protein DET1-like isoform 2 [Glycine max] Back     alignment and taxonomy information
 Score =  899 bits (2322), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/536 (79%), Positives = 478/536 (89%), Gaps = 5/536 (0%)

Query: 1   MFRSINVTSRIFERQIRTPAPGTSVHCARRFYENIVPSFTVYDIECPDHSFRKFTDDGQY 60
           M+RS N+ +R+F+RQI TPAPGTSVH ARRFYEN+VPS TVY++ECPDHSFRKFTDDGQY
Sbjct: 1   MYRSSNIVARVFDRQICTPAPGTSVHHARRFYENLVPSHTVYEVECPDHSFRKFTDDGQY 60

Query: 61  LISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELIC 120
           LISFSRNHQ+LIVYRP WLSFSCK+EDC +HDLP +AKRF+SFF+QLY V LASCNELIC
Sbjct: 61  LISFSRNHQELIVYRPRWLSFSCKDEDCDKHDLPSRAKRFDSFFSQLYCVPLASCNELIC 120

Query: 121 KDFFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFH 180
           KDFFL ME NQFGLFATSTAQIHDAP  G A+ GVP IEKITFHLLRLEDG +LD+KVF 
Sbjct: 121 KDFFLYMESNQFGLFATSTAQIHDAPAVGGAVHGVPSIEKITFHLLRLEDGEILDKKVFS 180

Query: 181 NDFINLAHNMGVFLYDDLLAIVSLRYQTIHILQVRDLGNLVDVRTIGSFCREDDELFLIS 240
           NDF+NL HNMGVFLYDDLLAIVSLRYQTIHILQ+RD GNLVDVR IG FCREDDELFL S
Sbjct: 181 NDFVNLTHNMGVFLYDDLLAIVSLRYQTIHILQIRDSGNLVDVRAIGEFCREDDELFLNS 240

Query: 241 NSQSLATSERSRLNPFPGNQVGN--GHNQVNQDDSFLSGIKQRLLSFIFQGMWNEETDQA 298
           N+Q +A S++++    PGN + N     Q N  +SFLSGIKQRLLSFIFQG+WNEE D  
Sbjct: 241 NAQGMAFSDKNKQLQLPGNHIENHMHQGQPNLGNSFLSGIKQRLLSFIFQGLWNEERDDT 300

Query: 299 M---SLKKKFFFHFQDYVDLIIWKVQFLDRHHLLIKFGSVDGGVSRNVDHHPAFFAVYNM 355
           +    L+KKF+FHFQDYVDLIIWKVQFLDRHHLLIKFGSVDGGVSRN DHHPAF AVYNM
Sbjct: 301 LRIQRLRKKFYFHFQDYVDLIIWKVQFLDRHHLLIKFGSVDGGVSRNADHHPAFVAVYNM 360

Query: 356 ETTEVVAFYQNSAEELYFLFEKFCDHFHATSRNSLHMNFISSHSNNVYALEQLRSIKNKG 415
           +TTE+V+FYQNSA+ELY LFE+FCDHFHATSRNS++MNFISSHSNN++ALEQLRSIK+K 
Sbjct: 361 DTTEIVSFYQNSADELYLLFEQFCDHFHATSRNSMYMNFISSHSNNIHALEQLRSIKDKA 420

Query: 416 GSFSQFVKKMMASLPFGCQSQSPSPYFDQSLFRYDEKLISATDRHRQSTDHPIKFISRRP 475
            S +QFVKKM+ASLPF CQSQSPSPYFDQSLFR+D+KLISATDRHRQSTDHPIKFI RR 
Sbjct: 421 SSSAQFVKKMLASLPFSCQSQSPSPYFDQSLFRFDDKLISATDRHRQSTDHPIKFILRRY 480

Query: 476 PYTLKFKIKPGPEAGTIDGRTKRISSFLFHPFLPLALSIQQTLFLQPSVVNIHFRR 531
           PY+LKFKIKPGPEAG++DGR K+ISSFLFHP LPLALS+QQTLFLQPSVVNIHFRR
Sbjct: 481 PYSLKFKIKPGPEAGSMDGRAKKISSFLFHPILPLALSVQQTLFLQPSVVNIHFRR 536

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296089049|emb|CBI38752.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356497389|ref|XP_003517543.1| PREDICTED: light-mediated development protein DET1-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|28439620|gb|AAM18188.2| deetiolated 1-like protein [Solanum tuberosum] Back     alignment and taxonomy information
>gi|224127041|ref|XP_002319992.1| predicted protein [Populus trichocarpa] gi|222858368|gb|EEE95915.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356538976|ref|XP_003537976.1| PREDICTED: light-mediated development protein DET1-like [Glycine max] Back     alignment and taxonomy information
>gi|357481305|ref|XP_003610938.1| Light-mediated development protein DET1 [Medicago truncatula] gi|355512273|gb|AES93896.1| Light-mediated development protein DET1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|359489353|ref|XP_002270528.2| PREDICTED: light-mediated development protein DET1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|350534582|ref|NP_001234148.1| light-mediated development protein DET1 [Solanum lycopersicum] gi|55976635|sp|Q9ZNU6.1|DET1_SOLLC RecName: Full=Light-mediated development protein DET1; AltName: Full=Deetiolated1 homolog; AltName: Full=High pigmentation protein 2; AltName: Full=Protein dark green; AltName: Full=tDET1 gi|4038594|emb|CAA10993.1| tDET1 protein [Solanum lycopersicum] gi|4454332|emb|CAA11914.1| tDET1 protein [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|388512103|gb|AFK44113.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query531
UNIPROTKB|Q9ZNU6523 DET1 "Light-mediated developme 0.979 0.994 0.777 1.2e-225
TAIR|locus:2005505543 DET1 "DE-ETIOLATED 1" [Arabido 0.998 0.976 0.698 1.2e-202
DICTYBASE|DDB_G02770751462 detA "putative chromatin-bindi 0.480 0.174 0.397 9.5e-84
UNIPROTKB|Q7L5Y6550 DET1 "DET1 homolog" [Homo sapi 0.777 0.750 0.349 1.8e-72
MGI|MGI:1923625550 Det1 "de-etiolated homolog 1 ( 0.777 0.750 0.349 1.8e-72
ZFIN|ZDB-GENE-030131-2809563 det1 "de-etiolated homolog 1 ( 0.774 0.730 0.348 2.9e-70
FB|FBgn0000018539 abo "abnormal oocyte" [Drosoph 0.463 0.456 0.236 2.4e-18
UNIPROTKB|Q9ZNU6 DET1 "Light-mediated development protein DET1" [Solanum lycopersicum (taxid:4081)] Back     alignment and assigned GO terms
 Score = 2178 (771.8 bits), Expect = 1.2e-225, P = 1.2e-225
 Identities = 415/534 (77%), Positives = 459/534 (85%)

Query:     1 MFRSINVTSRIFERQIRTPAPGTSVHCARRFYENIVPSFTVYDIECPDHSFRKFTDDGQY 60
             MF++ NVT+R+FERQI TPAPGTS+H ARRFYEN+VPS+T+YD+ECPDHSFRKFTDDG Y
Sbjct:     1 MFKTNNVTARLFERQICTPAPGTSIHRARRFYENVVPSYTIYDVECPDHSFRKFTDDGLY 60

Query:    61 LISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELIC 120
              +SFSRNHQDL+VYRP WL+FSCKEEDC  HDLP KA++FESFFTQLYSVTLAS  ELIC
Sbjct:    61 FVSFSRNHQDLVVYRPTWLTFSCKEEDCDTHDLPLKARKFESFFTQLYSVTLASSGELIC 120

Query:   121 KDFFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFH 180
             KDFFL ME NQFGLFATSTAQIHDAP TG AIQGVP +EKITFHLLRL DG +LDE+VFH
Sbjct:   121 KDFFLYMESNQFGLFATSTAQIHDAPPTGGAIQGVPSVEKITFHLLRLVDGAILDERVFH 180

Query:   181 NDFINLAHNMGVFLYDDLLAIVSLRYQTIHILQVRDLGNLVDVRTIGSFCREDDELFLIS 240
             ND++NLAH++G FLYDDLLAIVSLRYQ IHILQ+RD G+LVDVR IG FCREDDELFL S
Sbjct:   181 NDYVNLAHSIGAFLYDDLLAIVSLRYQRIHILQIRDSGDLVDVRAIGEFCREDDELFLNS 240

Query:   241 NSQSLATSERSRLNPFPXXXXXXXXXXXXXDDSFLSGIKQRLLSFIFQGMWNEETDQAMS 300
             NSQ L        N F              + SFLSGIKQRLLS+IF+G+WNE  DQ M 
Sbjct:   241 NSQVLVNHVG---NGF-------HHSLPQSETSFLSGIKQRLLSYIFRGIWNE-ADQTMR 289

Query:   301 ---LKKKFFFHFQDYVDLIIWKVQFLDRHHLLIKFGSVDGGVSRNVDHHPAFFAVYNMET 357
                LKKKF+FHFQDY+DLIIWKVQFLDRHHLLIKFGSVDGGVSRN D HP+FFAVYNMET
Sbjct:   290 VQCLKKKFYFHFQDYIDLIIWKVQFLDRHHLLIKFGSVDGGVSRNADIHPSFFAVYNMET 349

Query:   358 TEVVAFYQNSAEELYFLFEKFCDHFHATSRNSLHMNFISSHSNNVYALEQLRSIKNKGGS 417
             TE+VAFYQNSA+ELYFLFE F DHFH +S++SLHMNF+SSHSNN++ALEQLR  KNK  +
Sbjct:   350 TEIVAFYQNSADELYFLFELFSDHFHVSSKSSLHMNFMSSHSNNIHALEQLRCTKNKATN 409

Query:   418 FSQFVKKMMASLPFGCQSQSPSPYFDQSLFRYDEKLISATDRHRQSTDHPIKFISRRPPY 477
             FSQFVKKMMASLP  CQSQSPSPYFDQSLFR+DEKLISA DRHRQSTDHPIKFISRR P 
Sbjct:   410 FSQFVKKMMASLPCSCQSQSPSPYFDQSLFRFDEKLISAIDRHRQSTDHPIKFISRRQPN 469

Query:   478 TLKFKIKPGPEAGTIDGRTKRISSFLFHPFLPLALSIQQTLFLQPSVVNIHFRR 531
              LKFK+KPGPEAG+ DGRTK+I SFLFHP LPLALS+QQTLFLQ SVVNIHFRR
Sbjct:   470 ILKFKMKPGPEAGSTDGRTKKICSFLFHPILPLALSVQQTLFLQASVVNIHFRR 523
GO:0005515 "protein binding" evidence=IPI
TAIR|locus:2005505 DET1 "DE-ETIOLATED 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0277075 detA "putative chromatin-binding protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q7L5Y6 DET1 "DET1 homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1923625 Det1 "de-etiolated homolog 1 (Arabidopsis)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-2809 det1 "de-etiolated homolog 1 (Arabidopsis)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0000018 abo "abnormal oocyte" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9ZNU6DET1_SOLLCNo assigned EC number0.78170.97550.9904N/Ano
P48732DET1_ARATHNo assigned EC number0.70580.99810.9760yesno
Q7L5Y6DET1_HUMANNo assigned EC number0.33630.93970.9072yesno
Q9D0A0DET1_MOUSENo assigned EC number0.33630.93970.9072yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pm.C_LG_XIII000489
hypothetical protein (530 aa)
(Populus trichocarpa)
Predicted Functional Partners:
fgenesh4_pg.C_LG_I002797
hypothetical protein (1088 aa)
    • • 0.707
estExt_fgenesh4_pm.C_LG_I0627
hypothetical protein (558 aa)
      • 0.540

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query531
pfam09737407 pfam09737, Det1, De-etiolated protein 1 Det1 1e-161
>gnl|CDD|220372 pfam09737, Det1, De-etiolated protein 1 Det1 Back     alignment and domain information 
 Score =  463 bits (1192), Expect = e-161
 Identities = 179/425 (42%), Positives = 235/425 (55%), Gaps = 32/425 (7%)

Query: 121 KDFFLSMEGNQFGLFATSTAQIHDAP-------TTGRAIQGVPFIEKITFHLLRLEDGVV 173
           ++  L  E  ++ +   +TA              T  AI G P +E  TFHL+ L  GV+
Sbjct: 1   RECSLFTEDGRYVIVGAATAVPEAPYPRFYELYDTSEAISGNPPLEDYTFHLVDLHTGVI 60

Query: 174 LDEKVFHNDFINLAHNMGVFLYDDLLAIVSLRYQTIHILQVRDLGNLVDVRTIGSFCRED 233
           LD + F ND I L+HN GV LY D LAI+S ++Q IHI QV   G  ++VRTIG FCRED
Sbjct: 61  LDARDFRNDKIVLSHNQGVSLYGDTLAILSRQHQRIHIFQVAAEGRFIEVRTIGRFCRED 120

Query: 234 DELFLISNSQSLATSERSRLNPFPGNQVGNGHNQVNQDDSFLSGIKQRLLSFIFQGMWNE 293
           DELFL   S                 +VG           F++G+KQRLLSF+++    +
Sbjct: 121 DELFLTEASSVH--------------EVGTNIIDRATRLPFITGLKQRLLSFLYRQAKAD 166

Query: 294 ETDQAMSLKKKFFFHFQDYVDLIIWKVQFLDRHHLLIKFGSVDGGVSRNVD--HHPAFFA 351
            +  A    +KF+ +F++Y  LI+WK+Q LDR  LLIK+GS D    R  D    P+FF 
Sbjct: 167 SSSGADR-LRKFYRNFEEYRHLIMWKMQLLDRDLLLIKYGSEDVVTLRTADPNIQPSFFV 225

Query: 352 VYNMETTEVVAFYQNSAEELYFLFEKFCDHFHATSRNSLHMNFISSHSNNVYALEQLRSI 411
           VYN+  TEVV  YQN++ EL  LFE+FCD F   S      NF SSHS N YAL   R  
Sbjct: 226 VYNITKTEVVGVYQNTSVELLELFEQFCDSFRNASL-HSTTNFRSSHSGNAYALPIHRRF 284

Query: 412 KN-----KGGSFSQFVKKMMASLPFGCQSQSPSPYFDQSLFRYDEKLISATDRHRQSTDH 466
           K      +GG   +  K+++ASLP   QS S SPY D SLF YD+K +SA +R +   D 
Sbjct: 285 KQTIINARGGGHREAAKRLLASLPISAQSYSSSPYLDLSLFSYDDKWVSAMERPKPCADF 344

Query: 467 PIKFISRRPPYTLKFKIKPGPEAGTIDGRTKRISSFLFHPFLPLALSIQQTLFLQPSVVN 526
           PI+F SR     LKF+IK G         ++R+ +F+FHPF P ALS+Q+T   Q  VVN
Sbjct: 345 PIRFYSRDSG-LLKFRIKAGVRRQPTPSASRRLVAFIFHPFEPFALSVQRTY-NQAYVVN 402

Query: 527 IHFRR 531
            H R 
Sbjct: 403 FHNRH 407

This is the C-terminal conserved 400 residues of Det1 proteins of approximately 550 amino acids. Det1 (de-etiolated-1) is an essential negative regulator of plant light responses, and it is a component of the Arabidopsis CDD complex containing DDB1 and COP10 ubiquitin E2 variant. Mammalian Det1 forms stable DDD-E2 complexes, consisting of DDB1, DDA1 (DET1, DDB1 Associated 1), and a member of the UBE2E group of canonical ubiquitin conjugating enzymes and modulates Cul4A function. Length = 407

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 531
PF09737407 Det1: De-etiolated protein 1 Det1; InterPro: IPR01 100.0
KOG2558532 consensus Negative regulator of histones [Transcri 100.0
KOG2558532 consensus Negative regulator of histones [Transcri 99.87
KOG0275508 consensus Conserved WD40 repeat-containing protein 92.73
PRK11028330 6-phosphogluconolactonase; Provisional 88.67
KOG1446311 consensus Histone H3 (Lys4) methyltransferase comp 88.0
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 86.99
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 86.53
PF05935477 Arylsulfotrans: Arylsulfotransferase (ASST); Inter 85.98
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 83.13
PRK11028330 6-phosphogluconolactonase; Provisional 81.04
>PF09737 Det1: De-etiolated protein 1 Det1; InterPro: IPR019138 This entry represents Det1 family proteins [] Back     alignment and domain information 
Probab=100.00  E-value=9.1e-155  Score=1207.79  Aligned_cols=393  Identities=50%  Similarity=0.834  Sum_probs=371.0

Q ss_pred             eeEEEEecCceEEEEEeecccCCCCCC-------CCCCCCCCCCcceEEEEEEEccCCeEeeeeeeccceEEeeecceee
Q 009589          121 KDFFLSMEGNQFGLFATSTAQIHDAPT-------TGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVF  193 (531)
Q Consensus       121 refsLft~dgryvivas~~~~~~~~~~-------~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~  193 (531)
                      ||||||||||||||||||+++++++++       |||+++|+|++|+||||||||+||+|||+++|++|+|+||||||||
T Consensus         1 refsLft~dgryvivasat~~~~~~~~~~~d~~~~~eav~~~~~lE~~tfhlVdL~~G~v~D~~~f~~D~I~LsHn~Gv~   80 (407)
T PF09737_consen    1 REFSLFTEDGRYVIVASATAVPEDPPPRFYDIYRNNEAVSPVPPLEDYTFHLVDLHDGVVCDRRTFKNDKIHLSHNQGVY   80 (407)
T ss_pred             CceEEEecCCCEEEEEecccCCCCCCchhhhhhhcCCCcCCCCChhhEEEEEEEccCCcEecceEecCcEEEeccCcceE
Confidence            899999999999999999987777666       9999999999999999999999999999999999999999999999


Q ss_pred             eecceeeeeeecccEEEEEEEccCCeEEEeeeeCCccCcchHHHHhhccccchhcccccCCCCCCCCCCCCCCCCCCCCc
Q 009589          194 LYDDLLAIVSLRYQTIHILQVRDLGNLVDVRTIGSFCREDDELFLISNSQSLATSERSRLNPFPGNQVGNGHNQVNQDDS  273 (531)
Q Consensus       194 L~~dlLaILS~q~QtIhi~qI~~~G~fv~vrtIG~fc~eDD~l~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~p~~~~~  273 (531)
                      ||+|||||||+||||||||||+++|+||+||+|||||+||||++++++.+... ..            .....+| ++++
T Consensus        81 Ly~dlLaILS~q~QtIhi~qI~~~G~fv~vr~IG~~c~eDDel~l~~~~~~~~-~~------------~~~~~~~-~~~p  146 (407)
T PF09737_consen   81 LYGDLLAILSLQHQTIHIFQIRPDGRFVDVRTIGRFCREDDELFLSSQSQAHE-RD------------QNNLDRP-FREP  146 (407)
T ss_pred             EecchHHHHhhhheEEEEEEEcCCCEEEEeEEECCCcCCcHHHHhhccccccc-cc------------ccccccc-cccc
Confidence            99999999999999999999998999999999999999999999999876310 00            0112234 5788


Q ss_pred             ccchhhHHHHHHHhcccccccchhhHHHHHHhhhhHHHHhHhhhheehccccCeeeEeecccccccccCC--CCCceEEE
Q 009589          274 FLSGIKQRLLSFIFQGMWNEETDQAMSLKKKFFFHFQDYVDLIIWKVQFLDRHHLLIKFGSVDGGVSRNV--DHHPAFFA  351 (531)
Q Consensus       274 ~i~giKqRlLsfLyr~a~~~~~~~~~~l~~~Fy~~F~~~~~L~MWKmQlLD~~hLLIky~s~D~~~~r~~--~~~~s~fv  351 (531)
                      +||||||||||||||+|+++++++++++| +||++||+|++||||||||||++||||||+++|++++|.+  ++|++|||
T Consensus       147 ~i~~iKqRlLsfLyr~~~~~~~~~~~~~r-~Fy~~F~~~~~L~MWKmQlLD~~hLLIky~s~D~~~~r~~d~~~~~sffv  225 (407)
T PF09737_consen  147 FINGIKQRLLSFLYRRAWRESSDPADRLR-RFYFNFDQYRSLRMWKMQLLDEDHLLIKYGSEDVVTLRVSDPNSQPSFFV  225 (407)
T ss_pred             cccchhHHhHHHHHhhhhhcCCcchhhHH-HHHHHHHHHHHHHhhhhhhcchhheeeeeccccceeeccCCCCCCceEEE
Confidence            99999999999999999988889999998 9999999999999999999999999999999999999965  46999999


Q ss_pred             EEeeecceEEEEEeCChHHHHHHHHHhhhhcccCCCCCcCcccccCCCccHHHHHHHH-----hhhcCCCchHHHHHHHH
Q 009589          352 VYNMETTEVVAFYQNSAEELYFLFEKFCDHFHATSRNSLHMNFISSHSNNVYALEQLR-----SIKNKGGSFSQFVKKMM  426 (531)
Q Consensus       352 vYn~~t~eVl~vyen~S~eLl~l~e~f~d~f~~~~~~~~~~~f~~s~snn~~ar~~~~-----~~~ak~g~~~ea~kR~l  426 (531)
                      ||||+||||||||||+|+|||+|||||||+|||+++++.+ +|+||+|||+|||++++     +++||+||.+||+||||
T Consensus       226 vYn~~t~eV~~vyen~S~eLl~l~e~f~d~f~~~~~~~~~-~f~~s~s~n~~a~~~~~~~k~~~~~a~~~~~~ea~kRll  304 (407)
T PF09737_consen  226 VYNMETTEVLGVYENSSEELLKLFEQFCDHFRNAPLNSPN-NFRSSPSNNIYARPQHRRFKQTIVNARYGGHTEAVKRLL  304 (407)
T ss_pred             EEeeccceEEEEEcCChHHHHHHHHHHHHHhhcccccccc-CCccCCCCChhhhHHHHHHHHHHhhcccccHHHHHHHHH
Confidence            9999999999999999999999999999999999999886 99999999999999988     46789999999999999


Q ss_pred             hcCCCCCCCCCCCCCCCCCCCccccccccccccCCCCCCCCeeeEecCCCCeeeEEEecCCCCCCCCCccceeEEEEecC
Q 009589          427 ASLPFGCQSQSPSPYFDQSLFRYDEKLISATDRHRQSTDHPIKFISRRPPYTLKFKIKPGPEAGTIDGRTKRISSFLFHP  506 (531)
Q Consensus       427 ~~lP~s~Qs~S~SPYlD~sLFsYDdk~IS~~eRpk~~~e~PIrF~sR~~p~~lkFki~~g~~~~~~~~~~rrlvaf~FHP  506 (531)
                      ++||+|+||+|+|||||++||||||||||+|||||+|+|||||||+|++ |+|||||++|++++++++++||+|||||||
T Consensus       305 ~~lP~s~Qs~s~SPYlD~~LFsYDdk~IS~~eRpk~~~~~PIrF~sR~~-~~lkFki~~g~~~~~~~~~~rr~vaf~FHP  383 (407)
T PF09737_consen  305 AQLPISAQSYSSSPYLDLSLFSYDDKWISAIERPKPCGDHPIRFYSRDS-GLLKFKINAGARRGAAPSAARRLVAFTFHP  383 (407)
T ss_pred             hhCCCCccccCCCcCcCchhcccccceecccccCCCCCCCCcEEEeecC-CeEEEEEecCCcCCCCCcCcceEEEEEcCC
Confidence            9999999999999999999999999999999999999999999999998 999999999999999999999999999999


Q ss_pred             CCceEEEEEeecccCCeeEEEeecC
Q 009589          507 FLPLALSIQQTLFLQPSVVNIHFRR  531 (531)
Q Consensus       507 ~~PFaiSvq~~~~~~~~vvnfH~r~  531 (531)
                      +|||||||||| ||++||||||+||
T Consensus       384 ~~PFaiSvq~~-~~~~~vvnfh~r~  407 (407)
T PF09737_consen  384 FEPFAISVQRT-FNQEYVVNFHFRH  407 (407)
T ss_pred             CCCeEEEEEee-cCCCcEEEEEecC
Confidence            99999999999 9999999999997

Det1 (de-etiolated-1) is an essential negative regulator of plant light responses, and it is a component of the Arabidopsis CDD complex containing DDB1 and COP10 ubiquitin E2 variant. Mammalian Det1 forms stable DDD-E2 complexes, consisting of DDB1, DDA1 (DET1, DDB1 Associated 1), is a member of the UBE2E group of canonical ubiquitin conjugating enzymes and modulates Cul4A function [].
>KOG2558 consensus Negative regulator of histones [Transcription] Back     alignment and domain information
>KOG2558 consensus Negative regulator of histones [Transcription] Back     alignment and domain information
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query531
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 53.7 bits (128), Expect = 1e-07
 Identities = 82/542 (15%), Positives = 155/542 (28%), Gaps = 162/542 (29%)

Query: 2   FRSINVTSRIFERQIRT------PAPGTSVH----CARRFYENIVPSFTVYDIE-CPDHS 50
           F   NV+      ++R       PA    +       +          T   ++ C  + 
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK----------TWVALDVCLSYK 175

Query: 51  FRKFTDDGQYLISFSRNHQDLIVYRPMW-LSFSCKEEDCCRHDLPPKAK-RFES------ 102
            +   D   + ++    +    V   +  L +        R D     K R  S      
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

Query: 103 --FFTQLYSVTLASCNELICKDFFLSMEGNQFG-----LFATSTAQIHDAPTTGRAIQGV 155
               ++ Y   L     L+  +   +   N F      L  T   Q+ D           
Sbjct: 236 RLLKSKPYENCL-----LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD----------- 279

Query: 156 PFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLYDDLLAIVSLRYQTIHILQVR 215
                            +      H   I+L H+      D++ +++    + +   + +
Sbjct: 280 ----------------FLSAATTTH---ISLDHHSMTLTPDEVKSLLL---KYLDC-RPQ 316

Query: 216 DL------GNLVDVRTIGSFCRED----DELFLISNSQSLATSERS--RLNP-------- 255
           DL       N   +  I    R+     D    ++  +     E S   L P        
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376

Query: 256 ----FPGNQVGNGHNQVNQDDSFLSGIKQRLLSFIFQGMWNEETDQAM------SL---- 301
               FP +         +        I   LLS I+  +   +    +      SL    
Sbjct: 377 RLSVFPPS--------AH--------IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420

Query: 302 KKKFFFHFQD-YVDLIIWKVQFLDR---HHLLI-------KFGSVDGGVSRNVDHHPAFF 350
            K+        Y++L   KV+  +    H  ++        F S D  +   +D +    
Sbjct: 421 PKESTISIPSIYLEL---KVKLENEYALHRSIVDHYNIPKTFDS-DDLIPPYLDQYFYSH 476

Query: 351 AVYNMETTEVVAFYQNSAEELYFLFEK-FCD-HF-HATSRNSLHMNFISSHSNNVYALEQ 407
             ++++  E          E   LF   F D  F     R+       S    N   L+Q
Sbjct: 477 IGHHLKNIE--------HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT--LQQ 526

Query: 408 LRS----IKNKGGSFSQFVKKMMASLPFGCQSQS-PSPYFD--QSLFRYDEKLISATDRH 460
           L+     I +    + + V  ++  LP   +     S Y D  +     +++ I   + H
Sbjct: 527 LKFYKPYICDNDPKYERLVNAILDFLP-KIEENLICSKYTDLLRIALMAEDEAI-FEEAH 584

Query: 461 RQ 462
           +Q
Sbjct: 585 KQ 586

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query531
3scy_A361 Hypothetical bacterial 6-phosphogluconolactonase; 93.78
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 93.13
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 92.95
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 92.74
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 92.44
3scy_A361 Hypothetical bacterial 6-phosphogluconolactonase; 92.18
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 91.22
1l0q_A391 Surface layer protein; SLP, S-layer, 7-bladed beta 91.16
2vdu_B450 TRNA (guanine-N(7)-)-methyltransferase- associated 90.14
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 89.62
1jof_A365 Carboxy-CIS,CIS-muconate cyclase; beta-propeller, 89.48
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 89.45
1l0q_A391 Surface layer protein; SLP, S-layer, 7-bladed beta 88.66
2j04_A588 TAU60, YPL007P, hypothetical protein YPL007C; beta 88.45
4ery_A312 WD repeat-containing protein 5; WD40, WIN motif, b 86.64
1jof_A365 Carboxy-CIS,CIS-muconate cyclase; beta-propeller, 86.59
1nir_A543 Nitrite reductase; hemoprotein, denitrification, d 86.56
1xfd_A723 DIP, dipeptidyl aminopeptidase-like protein 6, dip 86.39
2gop_A347 Trilobed protease; beta propeller, open velcro, hy 86.05
2hqs_A415 Protein TOLB; TOLB, PAL, TOL, transport protein-li 85.76
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 84.51
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 84.34
2ecf_A741 Dipeptidyl peptidase IV; prolyl oligopeptidase fam 84.18
2ojh_A297 Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 82.25
4h5i_A365 Guanine nucleotide-exchange factor SEC12; copii ve 81.83
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 81.45
2z3z_A706 Dipeptidyl aminopeptidase IV; peptidase family S9, 81.34
2ojh_A297 Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 80.99
4h5i_A365 Guanine nucleotide-exchange factor SEC12; copii ve 80.81
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 80.28
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A Back     alignment and structure
Probab=93.78  E-value=4.3  Score=38.92  Aligned_cols=133  Identities=16%  Similarity=0.177  Sum_probs=74.2

Q ss_pred             eeeCCCCCeEEEeeCCCceEEEEeecCCCCCcccccccCCCCCcccchhhhhhheeeEEEccCCCeeeeeeEEEEecCce
Q 009589           52 RKFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSMEGNQ  131 (531)
Q Consensus        52 RKFTpDG~yLIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~~~e~L~refsLft~dgr  131 (531)
                      -.|+|||++|++-+.....+.||+....+...+ .+    .....        ...-...+..+.. . + ...|..||+
T Consensus       160 ~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~-~~----~l~~~--------~~~~~~~~~~~~~-~-~-~~~~spdg~  223 (361)
T 3scy_A          160 VRITPDGKYLLADDLGTDQIHKFNINPNANADN-KE----KFLTK--------GTPEAFKVAPGSG-P-R-HLIFNSDGK  223 (361)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTCCTTT-CC----CCEEE--------EEEEEEECCTTCC-E-E-EEEECTTSS
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEEcCCCCccc-cc----ceeec--------ccccceecCCCCC-C-e-EEEEcCCCC
Confidence            479999999988887788899998862110000 00    00000        0001112222221 1 1 356789999


Q ss_pred             EEEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeeeccc--------eEEeeecceeeeecceeeeee
Q 009589          132 FGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHND--------FINLAHNMGVFLYDDLLAIVS  203 (531)
Q Consensus       132 yvivas~~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D--------~I~LsHN~Gv~L~~dlLaILS  203 (531)
                      ++.+++..                    +=++.++|+.+|.+.-...+...        -|.++.+      +..|++..
T Consensus       224 ~l~v~~~~--------------------~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spd------g~~l~v~~  277 (361)
T 3scy_A          224 FAYLINEI--------------------GGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPD------GKYLYASN  277 (361)
T ss_dssp             EEEEEETT--------------------TCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTT------SSEEEEEE
T ss_pred             EEEEEcCC--------------------CCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCC------CCEEEEEC
Confidence            98875422                    12478889989876433333221        2333332      33455655


Q ss_pred             ec-ccEEEEEEEc-cCCeEEEeeee
Q 009589          204 LR-YQTIHILQVR-DLGNLVDVRTI  226 (531)
Q Consensus       204 ~q-~QtIhi~qI~-~~G~fv~vrtI  226 (531)
                      .. .-+|.||.+. .+|++..+..+
T Consensus       278 ~~~~~~i~v~~~~~~~g~~~~~~~~  302 (361)
T 3scy_A          278 RLKADGVAIFKVDETNGTLTKVGYQ  302 (361)
T ss_dssp             CSSSCEEEEEEECTTTCCEEEEEEE
T ss_pred             CCCCCEEEEEEEcCCCCcEEEeeEe
Confidence            55 6899999996 46887666554
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Back     alignment and structure
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... Back     alignment and structure
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 Back     alignment and structure
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* Back     alignment and structure
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 Back     alignment and structure
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} Back     alignment and structure
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} Back     alignment and structure
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Back     alignment and structure
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* Back     alignment and structure
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Back     alignment and structure
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query531
d1ri6a_333 Putative isomerase YbhE {Escherichia coli [TaxId: 93.6
d1qksa2432 C-terminal (heme d1) domain of cytochrome cd1-nitr 92.71
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 92.61
d1k32a3360 Tricorn protease domain 2 {Archaeon Thermoplasma a 91.34
d1hzua2426 C-terminal (heme d1) domain of cytochrome cd1-nitr 91.02
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 90.44
d1pbyb_337 Quinohemoprotein amine dehydrogenase B chain {Para 90.13
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 89.61
d1jofa_365 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu 88.07
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 87.29
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 82.15
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 81.95
d1jmxb_346 Quinohemoprotein amine dehydrogenase B chain {Pseu 81.85
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=93.60  E-value=0.54  Score=41.29  Aligned_cols=122  Identities=19%  Similarity=0.170  Sum_probs=66.9

Q ss_pred             eeCCCCCeEEEeeCCCceEEEEeecCCCCCcccccccCCCCCcccchhhhhhheeeEEEccCCCeeeeeeEEEEecCceE
Q 009589           53 KFTDDGQYLISFSRNHQDLIVYRPMWLSFSCKEEDCCRHDLPPKAKRFESFFTQLYSVTLASCNELICKDFFLSMEGNQF  132 (531)
Q Consensus        53 KFTpDG~yLIaFS~dq~~L~vYry~g~~~~~~~~~~~~~~~~~r~~~F~~fF~~~~~~~l~~~~e~L~refsLft~dgry  132 (531)
                      .|||||++|.+=+.+...+.+|+........+                     ..-...  .+...   ...-+.+||++
T Consensus        43 a~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~---------------------~~~~~~--~~~~p---~~l~~spDg~~   96 (333)
T d1ri6a_          43 VVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT---------------------FAAESA--LPGSL---THISTDHQGQF   96 (333)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTTCCEE---------------------EEEEEE--CSSCC---SEEEECTTSSE
T ss_pred             EEeCCCCEEEEEECCCCeEEEEEEeCCCCcEE---------------------Eeeecc--cCCCc---eEEEEcCCCCE
Confidence            69999999987788788888888752110000                     001111  11111   02457799999


Q ss_pred             EEEEeecccCCCCCCCCCCCCCCCCcceEEEEEEEccCCeEeeeeeeccceEEeeecceeeeecceeeeeeecccEEEEE
Q 009589          133 GLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLYDDLLAIVSLRYQTIHIL  212 (531)
Q Consensus       133 vivas~~~~~~~~~~~n~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~~dlLaILS~q~QtIhi~  212 (531)
                      +.+++..                    +.++.+++..++..........- ....|.-.+.-.+..+.+.+..-.+|.++
T Consensus        97 l~v~~~~--------------------~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~v~~s~d~~~~~~~~~~~~~i~~~  155 (333)
T d1ri6a_          97 VFVGSYN--------------------AGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLF  155 (333)
T ss_dssp             EEEEETT--------------------TTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEE
T ss_pred             EeecccC--------------------CCceeeeccccccceecccccCC-CccceEEEeeecceeeeccccccceeeEE
Confidence            9886432                    12244555555544333221110 00112222233456778888888999999


Q ss_pred             EEccCCeEE
Q 009589          213 QVRDLGNLV  221 (531)
Q Consensus       213 qI~~~G~fv  221 (531)
                      .....+...
T Consensus       156 ~~~~~~~~~  164 (333)
T d1ri6a_         156 TVSDDGHLV  164 (333)
T ss_dssp             EECTTSCEE
T ss_pred             EeccCCcce
Confidence            987655444
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure