Citrus Sinensis ID: 009600

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-
Protein Sequence
MTADTLTQQNGLFVPDGDLISKNPNSISVTTNKETERRRRRRKQKKNKKASQQATLTDSNNDADNETEDEDSQSQVAEKVTVEYVPEKADLDDGLDDEFRKIFEKFSFHDAAGSEDIDKRDESAQNAESKKKADSDTEDEEQDSQPKEKGLSNKKKKLQRRMKIAELKQICSRPDVVEVWDATASDPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSHGDLYHEGKEFEVKLREMKPGILSHDLKEALGMPDGAPPPWLINMQRYGPPPSYPHLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGIHQQEQPNYEEEPVDKSKHWGDLEEEEEEEEEEEEEEQIEEEELEDGIQSVDTLSSTPTGVETPDVIDLRKQQRKEPERPLYQVLEEKEERIAPGTLLGTTHTYVVNTGTQDKAGAKRVRMKCLFLSIPSIQNLLEYQTKSTLRSL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEcccccccccHHHHHHHHHHHHccccccccccccccccHHHHHHHHcccccccccccccccccccccccHHHHHHHHHccHHHHHHHcccccEEEEEccccccHHHHHHHHHccccccccccccccHHccccccccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccccccccccccccccHHHHHHHcccccccccHHHHHHccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccEEEcccccccccccccccccccccccHHHHHHHHHHcHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccHEEcccccEccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEcccccccccHHHHHHHHHHHHcccccccccHcccccHHccccccccccccccccccccccccccccccHHHHHHHccccHHHHHHHcccccEEEEEEccccccHHHHEEEHcccccccccHHHHHHHHHHccccccccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEcHHHHHHHHHHHcccccccccccEEEccccHHHHHHccccccccHHHHHHHccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccHHHHHHccccccccccEEEcccccccccccccccccEEEEcccccccccccccccccHHHcccHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mtadtltqqnglfvpdgdlisknpnsisvttnkETERRRRRRKQKKNKKASQQatltdsnndadnetededsqsqVAEKVTVEyvpekadlddglDDEFRKIFEKFsfhdaagsedidkrdesaqnaeskkkadsdtedeeqdsqpkekglsnKKKKLQRRMKIAELKQICSRPDVVEvwdatasdpKLLVFLKAYrntvpvprhwcqkrkflqgkrgiekqpfqlpdfIAATGIEKIRQAYIEKEDSKKLKQKQRErmqpkmgkmdiDYQVLHDAFfkyqtkpkltshgdlyhegkEFEVKLremkpgilshdlkealgmpdgapppwlinmqrygpppsyphlkipglnapippgasfgyhpggwgkppvdeygrplygdvfgihqqeqpnyeeepvdkskhwgdleeeeeeeeeeEEEEQIEEEELedgiqsvdtlsstptgvetpdvIDLRKqqrkeperplyqvleekeeriapgtllgtTHTYVVntgtqdkagaKRVRMKCLFLSIPSIQNLLEYQTKSTLRSL
Flexible Loop (DISEMBL)
mtadtltqqnglfvpdgdlisknpnsisvttnketerrrrrrkqkknkkasqqatltdsnndadnetededsqsqvaekvtveyvpekadlddgLDDEFRKIFEKFSfhdaagsedidkrdesaqnaeskkkadsdtedeeqdsqpkekglsnkkkklQRRMKIAelkqicsrpdvVEVWDATASDPKLLVFLKAYrntvpvprhwcQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQayiekedskklkqkqrermqpkmgkmDIDYQVLHDAFFKYQTkpkltshgdlyHEGKEFEVKLREMKPGILSHDLKEALGMPDGAPPPWLINMQRYGPPPSYPHLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGIHQQEqpnyeeepvdkskHWGDLEEEEEEEEEEEEEEQIEeeeledgiqsvdtlsstptgvetpdvidlrkqqrkeperplyqvleekeeriapgtllgtthtyvvntgtqdkagakRVRMKCLFLsipsiqnlleyqtkstlrsl
Low Complexity Region (SEG)
MTADTLTQQNGLFVPDGDLISKNPNSISVttnketerrrrrrkqkknkkASQQATLtdsnndadnetededsQSQVAEKVTVEYVPEKADLDDGLDDEFRKIFEKFSFHDAAGSEDIDKRDESAQNAESKKKAdsdtedeeqdsqPkekglsnkkkkLQRRMKIAELKQICSRPDVVEVWDATASDPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSHGDLYHEGKEFEVKLREMKPGILSHDLKEALGMPDGAPPPWLINMQRYGPPPSYPHLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGIHQQEQPNYEEEPVDKSKHWGDLeeeeeeeeeeeeeeqieeeeleDGIQSVDTLSSTPTGVETPDVIDLRKQQRKEPERPLYQVLEEKEERIAPGTLLGTTHTYVVNTGTQDKAGAKRVRMKCLFLSIPSIQNLLEYQTKSTLRSL
Disordered region (IsUnstruct)
************************************************************************************************DEFRKIFEKFSF*******************************************************IAELKQICSRPDVVEVWDATASDPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYI***********************DIDYQVLHDAFFKYQTKPKLTSHGDLYHEGKEFEVKLR*****IL****************PWLINMQRY*****YPHLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGIH*****************************************************************************************IAPGTLLGTTHTYVVNTGTQDKAGAKRVRMKCLFLSIPSIQNLLEY*********
Disordered Region (DISOPRED)
**********************************************************************************EYVPEKADLDDGLDDEFRKIFEK***********************************************************AELKQICSRPDVVEVWDATASDPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKI**************************KMDIDYQVLHDAFFKYQTKPKLTSHGDLYHEGKEFEVKLREMKPGILSHDLKEALGMPDGAPPPWLINMQRYGPPPSYPHLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVF*****************SKH*******************************************************************************************************************************
Disordered Region (DISEMBL)
MTADTLTQQNGLFVPDGDLISKNPNSISV***********************************************AEKVTVEYVPEKADLDDGLDDEFRKIFEKFSFHDAAGS*********************************************RRMKIAELKQICSRPDVVEVWDATASDPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDS************PKMGKMDIDYQVLHDAFFKYQTKPKLTSHGDLYHEGKEFEVKLREMKPGILSHDLKEALGMPDGAPPPWLINMQRYGPPPSYPHLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGIHQQEQ*******************************************SVDTLSSTPTGVETPDVIDLRKQQRKEPERPLYQVLEEKEERIAPGTLLGTTHTYVVNTGTQDKAGAKRVRMKCLFLSIPSIQNLLEYQ********
Disordered Region (DISPRO)
****TLTQQNGLFVPD*************************************************************EKVTVEYVPEKADLDDGLDDEFRKIFEKFSFH******************************************SNKKKKLQRRMKIAELKQICSRPDVVEVWDATASDPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSHGDLYHEGKEFEVKLREMKPGILSHDLKEALGMPDGAPPPWLINMQRYGPPPSYPHLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGIHQ**********************************************************ETPDVIDLRKQQRKEPERPLYQVLEEKE****P*TLL********NTGTQ**AGAKRVRMKCLFLSIPSIQNLLEYQTKSTL***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTADTLTQQNGLFVPDGDLISKNPNSISVTTNxxxxxxxxxxxxxxxxxxxxxATLTDSNNDADNETEDEDSQSQVAEKVTVEYVPEKADLDDGLDDEFRKIFEKFSFHDAAGSEDIDKRDESAQNAESKKKADSDTEDEEQDSQPKxxxxxxxxxxxxxxxxxxxxxQICSRPDVVEVWDATASDPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSHGDLYHEGKEFEVKLREMKPGILSHDLKEALGMPDGAPPPWLINMQRYGPPPSYPHLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGIHQQEQPNYEEEPVDKSKHxxxxxxxxxxxxxxxxxxxxxxxxxxxxIQSVDTLSSTPTGVETPDVIDLRKQQRKEPERPLYQVLEEKEERIAPGTLLGTTHTYVVNTGTQDKAGAKRVRMKCLFLSIPSIQNLLEYQTKSTLRSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	531	2.2.26 [Sep-21-2011]
Q13435	895	Splicing factor 3B subuni	yes	no	0.836	0.496	0.510	1e-115
Q9UUI3	601	Pre-mRNA-splicing factor	yes	no	0.839	0.742	0.413	2e-90
Q02554	436	Cold sensitive U2 snRNA s	yes	no	0.497	0.605	0.339	1e-41

>sp|Q13435|SF3B2_HUMAN Splicing factor 3B subunit 2 OS=Homo sapiens GN=SF3B2 PE=1 SV=2

 Score =  415 bits (1066), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 243/476 (51%), Positives = 318/476 (66%), Gaps = 32/476 (6%)

Query: 57  TDSNNDADNETEDEDSQSQVAEKVTVEYVPEKADLDDGLDDEFRKIFEKFSFHD------ 110
           ++S+ D + ++         A  V +EYV E+ ++ +     F++IFE F   D      
Sbjct: 344 SESSGDREKDSTRSRGSDSPAADVEIEYVTEEPEIYEPNFIFFKRIFEAFKLTDDVKKEK 403

Query: 111 AAGSEDIDKRDESAQNA-----ESKKKADSDTEDEEQDSQPKEKGLSNKKKKLQRRMKIA 165
               E +DK + SA        E  K +D D+ D+EQ+ +P+   LS KK +   R  +A
Sbjct: 404 EKEPEKLDKLENSAAPKKKGFEEEHKDSDDDSSDDEQEKKPEAPKLSKKKLRRMNRFTVA 463

Query: 166 ELKQICSRPDVVEVWDATASDPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQ 225
           ELKQ+ +RPDVVE+ D TA DPKLLV LKA RN+VPVPRHWC KRK+LQGKRGIEK PF+
Sbjct: 464 ELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFE 523

Query: 226 LPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPK 285
           LPDFI  TGI+++R+A  EKE+ K +K K RE+++PKMGK+DIDYQ LHDAFFK+QTKPK
Sbjct: 524 LPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPK 583

Query: 286 LTSHGDLYHEGKEFEVKLREMKPGILSHDLKEALGMPDG-----APPPWLINMQRYGPPP 340
           LT HGDLY+EGKEFE +L+E KPG LS +L+ +LGMP G      PPPWLI MQRYGPPP
Sbjct: 584 LTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPP 643

Query: 341 SYPHLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGIHQQE-QPNYEEEPV 399
           SYP+LKIPGLN+PIP   SFGYH GGWGKPPVDE G+PLYGDVFG +  E Q   EEE +
Sbjct: 644 SYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEI 703

Query: 400 DKSKHWGDLEEEEEEEEEEEEEEQIEEEE---------LEDGIQSVDTLSSTPTGVETPD 450
           D++  WG+LE  +EE  EEEEEE+ +E++          + G+ +    SS P G+ETP+
Sbjct: 704 DRTP-WGELEPSDEESSEEEEEEESDEDKPDETGFITPADSGLITPGGFSSVPAGMETPE 762

Query: 451 VIDLRKQQRKEP----ERP-LYQVLEEKEERIAPGTLLGTTHTYVVNTGTQDKAGA 501
           +I+LRK++ +E     E P L+ VL EK      G ++G+TH Y ++T    K  A
Sbjct: 763 LIELRKKKIEEAMDGSETPQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPA 818

Subunit of the splicing factor SF3B required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex. Belongs also to the minor U12-dependent spliceosome, which is involved in the splicing of rare class of nuclear pre-mRNA intron.
Homo sapiens (taxid: 9606)

>sp|Q9UUI3|SA145_SCHPO Pre-mRNA-splicing factor sap145 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sap145 PE=1 SV=1

 Score =  333 bits (855), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 213/515 (41%), Positives = 289/515 (56%), Gaps = 69/515 (13%)

Query: 32  NKETERRRRRRKQKK-NKKASQQATLTDSN-NDADNETEDEDS---------------QS 74
           NK++  + RR K+K   +K +  A L + N +D D  TE+ D+               ++
Sbjct: 42  NKKSRNQVRREKKKLLREKTNSGAKLAEKNSDDKDQLTENNDNLYNDKKSNGNFYDTNKT 101

Query: 75  QVAEKVTVEYVPEKADLD--DGLDDEFRKIFEKFSFHDAAGSEDIDKRDESAQNAESKKK 132
              + +    + +  +LD  D L ++F+ +F +F    A G E   +  +  Q   S  +
Sbjct: 102 DSVDGMVYTTIVDSVELDPNDPLIEQFKDVFNRFK---ADGQEKDFEDTDKGQIMYSDDE 158

Query: 133 ADSDTEDEEQDSQPKEKGLSNKKKKLQRRMKIAELKQICSRPDVVEVWDATASDPKLLVF 192
             S+ E++    Q +E+ LS KK +  +RM +A+LK +  + DVVE WD ++ DP  L  
Sbjct: 159 ILSEGEEDALQKQ-QEEKLSKKKLRKLKRMTVAQLKMLSEKADVVEWWDVSSLDPLFLTH 217

Query: 193 LKAYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLK 252
           LKAY NTVPVPRHW QKR +L G+RGIE+Q F+LP +I ATGI ++R A  E E    L+
Sbjct: 218 LKAYPNTVPVPRHWNQKRDYLSGQRGIERQLFELPSYIRATGIVQMRNAVHENEADMPLR 277

Query: 253 QKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSHGDLYHEGKEFEVKLREMKPGILS 312
           QK RER+QPKMGK+DIDYQ LHDAFF+YQTKP LT  G+ Y EGKE E  ++E +PG +S
Sbjct: 278 QKMRERVQPKMGKLDIDYQKLHDAFFRYQTKPVLTGFGECYFEGKELEADVKEKRPGDIS 337

Query: 313 HDLKEALGMPDGAPPPWLINMQRYGPPPSYPHLKIPGLNAPIPPGASFGYHPGGWGKPPV 372
            +L+EALG+  GAPPPWL  MQRYGPPPSYP LKIPG+N PIP GA +G+HPGGWGKPPV
Sbjct: 338 EELREALGIAPGAPPPWLFAMQRYGPPPSYPDLKIPGVNCPIPTGAQWGFHPGGWGKPPV 397

Query: 373 DEYGRPLYGDVFGIHQQEQPNYEEEPVDKSKHWG-----------------DLE------ 409
           D++ RPLYGDVFG  +         PV  ++HWG                 D+E      
Sbjct: 398 DQFNRPLYGDVFGNVKPRIHAGTGSPV-STQHWGELEEFEEEESSEEEESEDVEYPTEEI 456

Query: 410 -------EEEEEEEEEEEEEQIEEEELEDGIQSVDTLSSTPTGVETPDVIDLRKQQRKEP 462
                  E +   E   + E +  E L    QS          VE  D ++LRK  +   
Sbjct: 457 TERETIEEYQSASEPRSQREDLHAEPLTYFNQS---------NVEV-DNVELRKNTQPSS 506

Query: 463 E---RPLYQVLEEKEERIAPGTLLGTTHTYVVNTG 494
           +   R LYQVL EK   I+    +G  H Y + T 
Sbjct: 507 DAANRDLYQVLPEKSTNIS--GFMGPQHQYDIPTA 539

Involved in pre-mRNA splicing. May be involved in endoplasmic reticulum-associated protein degradation (ERAD) and required for growth at low and high temperatures.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q02554|CUS1_YEAST Cold sensitive U2 snRNA suppressor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CUS1 PE=1 SV=1

 Score =  171 bits (434), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 96/283 (33%), Positives = 158/283 (55%), Gaps = 19/283 (6%)

Query: 91  LDDGLDDEFRKIFEKFSFHDAAGSEDIDKRDESA------QNAESKKKADSDTEDEEQDS 144
           +D  L+ EF+ + ++F   +    ++I K +++       +N    +K  ++ E E+  S
Sbjct: 55  VDAKLEKEFKDVLQRFQVQENDTPKEITKDEKNNHVVIVEKNPVMNRKHTAEDELEDTPS 114

Query: 145 QPKEKGLSNKKKKLQRRMKIAELKQICSRPDVVEVWDATASDPKLLVFLKAYRNTVPVPR 204
              E+ LS +K++   +  +++LK     P ++E +D  A  P LL  +K  +N +PVP 
Sbjct: 115 DGIEEHLSARKRRKTEKPSLSQLKSQVPYPQIIEWYDCDARYPGLLASIKCTKNVIPVPS 174

Query: 205 HWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIR----QAYIEKEDSKKLKQKQRERMQ 260
           HW  K+++L G+  + K+PF+LPD I  T IE++R    Q+ ++ +D K LK+  R R+Q
Sbjct: 175 HWQSKKEYLSGRSLLGKRPFELPDIIKKTNIEQMRSTLPQSGLDGQDEKSLKEASRARVQ 234

Query: 261 PKMGKMDIDYQVLHDAFFKYQTKPK---LTSHGDLYHEGKEF--EVKLREM----KPGIL 311
           PKMG +D+DY+ LHD FFK     K   L   GD+Y+E +    E   + M    +PG +
Sbjct: 235 PKMGALDLDYKKLHDVFFKIGANWKPDHLLCFGDVYYENRNLFEETNWKRMVDHKRPGRI 294

Query: 312 SHDLKEALGMPDGAPPPWLINMQRYGPPPSYPHLKIPGLNAPI 354
           S +L+  + +P+G  PPW + M+  G P  YP LKI GLN  I
Sbjct: 295 SQELRAIMNLPEGQLPPWCMKMKDIGLPTGYPDLKIAGLNWDI 337

Essential splicing protein required for U2 snRNP binding to pre-mRNA during spliceosome assembly.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	531
356546253	577	PREDICTED: splicing factor 3B subunit 2-	0.939	0.864	0.801	0.0
224078924	585	predicted protein [Populus trichocarpa]	0.943	0.856	0.796	0.0
255555981	590	Splicing factor 3B subunit, putative [Ri	0.858	0.772	0.843	0.0
356549367	575	PREDICTED: splicing factor 3B subunit 2-	0.937	0.866	0.779	0.0
356555130	575	PREDICTED: splicing factor 3B subunit 2-	0.937	0.866	0.797	0.0
449470216	580	PREDICTED: splicing factor 3B subunit 2-	0.947	0.867	0.793	0.0
357446557	578	Splicing factor 3B subunit [Medicago tru	0.920	0.846	0.766	0.0
224113969	588	predicted protein [Populus trichocarpa]	0.947	0.855	0.773	0.0
357446559	523	Splicing factor 3B subunit [Medicago tru	0.815	0.827	0.834	0.0
297799902	584	hypothetical protein ARALYDRAFT_914502 [	0.951	0.864	0.737	0.0

>gi|356546253|ref|XP_003541544.1| PREDICTED: splicing factor 3B subunit 2-like [Glycine max]

 Score =  763 bits (1969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/509 (80%), Positives = 452/509 (88%), Gaps = 10/509 (1%)

Query: 1   MTADTLTQQNGLFVPDGDLISKNPNSISVTTNKETERRRRRRKQKKNKKASQQATLTDSN 60
           M A+T T QNG+ V + D   ++ NS S  T  +  R   RR++++ +K        +  
Sbjct: 1   MAAETFTYQNGV-VSNAD---QDANSNSSAT--KKSRENERRRRRRKQKKKNNKASKEPT 54

Query: 61  NDADNETEDEDSQSQVAEKVTVEYVPEKADLDDGLDDEFRKIFEKFSFHDAAGSEDIDKR 120
            D D+ TE+ D Q QV E+V +EYVPE+A+LD+GLD+EFRKIFEKFSF +  GSED DK+
Sbjct: 55  EDGDDATENTDPQ-QVVEQVEIEYVPERAELDEGLDEEFRKIFEKFSFGEVTGSEDNDKK 113

Query: 121 DESAQNAESKKKADSDTEDEEQDSQPKEKGLSNKKKKLQRRMKIAELKQICSRPDVVEVW 180
           DES +NA + KKADSD+E+EE D++ KEKG+SNKKKKLQRRMKIAELKQICSRPDVVEVW
Sbjct: 114 DESVENATTNKKADSDSEEEENDNEQKEKGISNKKKKLQRRMKIAELKQICSRPDVVEVW 173

Query: 181 DATASDPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQ 240
           DATASDPKLLVFLK+YRNTVPVPRHWCQKRKFLQGKRGIEK PFQLPDFIAATGIEKIRQ
Sbjct: 174 DATASDPKLLVFLKSYRNTVPVPRHWCQKRKFLQGKRGIEKLPFQLPDFIAATGIEKIRQ 233

Query: 241 AYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSHGDLYHEGKEFE 300
           AYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTS G+LYHEGKEFE
Sbjct: 234 AYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSLGELYHEGKEFE 293

Query: 301 VKLREMKPGILSHDLKEALGMPDGAPPPWLINMQRYGPPPSYPHLKIPGLNAPIPPGASF 360
           VKLREMKPG+LSH+LKEALGMP+GAPPPWLINMQRYGPPPSYPHLKIPGLNAPIPPGASF
Sbjct: 294 VKLREMKPGMLSHELKEALGMPEGAPPPWLINMQRYGPPPSYPHLKIPGLNAPIPPGASF 353

Query: 361 GYHPGGWGKPPVDEYGRPLYGDVFGIHQQEQPNYEEEPVDKSKHWGDLEEEEEEEEEEEE 420
           GYHPGGWGKPPVDEYGRPLYGDVFG+HQQ+QPNYEEEPVDK+KHWGDLEEEEEEEEEEEE
Sbjct: 354 GYHPGGWGKPPVDEYGRPLYGDVFGVHQQDQPNYEEEPVDKTKHWGDLEEEEEEEEEEEE 413

Query: 421 EEQIEEEELED---GIQSVDTLSSTPTGVETPDVIDLRKQQRKEPERPLYQVLEEKEERI 477
           EE+ EE E E+   GIQSVD+LSSTPTGVETPDVIDLRKQQRKEPE+PLYQVLEEKEE+I
Sbjct: 414 EEEEEEMEEEELEAGIQSVDSLSSTPTGVETPDVIDLRKQQRKEPEKPLYQVLEEKEEKI 473

Query: 478 APGTLLGTTHTYVVNTGTQDKAGAKRVRM 506
           APGTLLGTTHTYVVNTGTQDK+GAKRV +
Sbjct: 474 APGTLLGTTHTYVVNTGTQDKSGAKRVDL 502

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078924|ref|XP_002305682.1| predicted protein [Populus trichocarpa] gi|222848646|gb|EEE86193.1| predicted protein [Populus trichocarpa]

 Score =  759 bits (1961), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/516 (79%), Positives = 455/516 (88%), Gaps = 15/516 (2%)

Query: 1   MTADTLTQQNGLFVPDGDLISKNPNSISVTTNKETERRRRRRKQKKNKKASQQATLTD-- 58
           MT +TL  QNG+ V +GDL S NPNS     +K  ERRRRRRKQKKNK     A+     
Sbjct: 1   MTVETLPYQNGV-VSNGDLASANPNS--TKKSKVNERRRRRRKQKKNKSQVTDASANGYD 57

Query: 59  ---SNNDADNETEDEDSQSQVAEKVTVEYVPEKADLDDGLDDEFRKIFEKFSFHDAAGSE 115
              +N+D D+  E+ D Q QV ++V +EYVPEKA+L+DG+D EFR IFEKF+   +AGSE
Sbjct: 58  SDTANDDGDDAKENADPQ-QVVDQVVIEYVPEKAELEDGMD-EFRNIFEKFNLLQSAGSE 115

Query: 116 DIDKRDESAQNAESKKKADSDTEDEEQDSQPKEKGLSNKKKKLQRRMKIAELKQICSRPD 175
           + DK+DES QNAE+KKKADSD++DEEQ+++ KEKG+SNKKKKLQRRMKIA LKQICSRPD
Sbjct: 116 ENDKKDESVQNAEAKKKADSDSDDEEQENEQKEKGVSNKKKKLQRRMKIANLKQICSRPD 175

Query: 176 VVEVWDATASDPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGI 235
           VVEVWDAT++DPKLLVFLK+YRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGI
Sbjct: 176 VVEVWDATSADPKLLVFLKSYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGI 235

Query: 236 EKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSHGDLYHE 295
           EKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLT+ GDLYHE
Sbjct: 236 EKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTTLGDLYHE 295

Query: 296 GKEFEVKLREMKPGILSHDLKEALGMPDGAPPPWLINMQRYGPPPSYPHLKIPGLNAPIP 355
           GKEFEVKLREMKPG LS +LKE+LGMP+GAPPPWLINMQRYGPPPSYPHLKIPGLNAPIP
Sbjct: 296 GKEFEVKLREMKPGSLSQELKESLGMPEGAPPPWLINMQRYGPPPSYPHLKIPGLNAPIP 355

Query: 356 PGASFGYHPGGWGKPPVDEYGRPLYGDVFGIHQQEQPNYEEEPVDKSKHWG-----DLEE 410
           PGASFGYH GGWGKPPVDEYGRPLYGDVFG+  Q+QPNYEEEPVDK+KHWG     + EE
Sbjct: 356 PGASFGYHAGGWGKPPVDEYGRPLYGDVFGVQIQDQPNYEEEPVDKTKHWGDLEEEEEEE 415

Query: 411 EEEEEEEEEEEEQIEEEELEDGIQSVDTLSSTPTGVETPDVIDLRKQQRKEPERPLYQVL 470
           EEEE+EEEEEEEQ++EEELEDG QSVD+LSSTPTGVETPDVIDLRKQQRKEPERPLYQVL
Sbjct: 416 EEEEDEEEEEEEQLDEEELEDGAQSVDSLSSTPTGVETPDVIDLRKQQRKEPERPLYQVL 475

Query: 471 EEKEERIAPGTLLGTTHTYVVNTGTQDKAGAKRVRM 506
           EEK+E+IA GTLLGTTHTYVVNTGTQDKA  KRV +
Sbjct: 476 EEKQEKIAAGTLLGTTHTYVVNTGTQDKAAGKRVDL 511

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555981|ref|XP_002519025.1| Splicing factor 3B subunit, putative [Ricinus communis] gi|223541688|gb|EEF43236.1| Splicing factor 3B subunit, putative [Ricinus communis]

 Score =  752 bits (1941), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/465 (84%), Positives = 426/465 (91%), Gaps = 9/465 (1%)

Query: 50  ASQQATLTDSNNDADNETE------DEDSQSQ-VAEKVTVEYVPEKADLDDGLDDEFRKI 102
           AS  +   ++NN++ +  E      +E+S  Q V E+V VEYV EKA+LDDG+D+EFRKI
Sbjct: 53  ASDSSVTANANNESSDNDEANGSYANENSDPQKVMEQVVVEYVLEKAELDDGMDEEFRKI 112

Query: 103 FEKFSFHDAAGSEDIDKRDESAQNAESKKKADSDTEDEEQDSQPKEKG-LSNKKKKLQRR 161
           FEKF+F +AA +E+ D +DESAQNAESKKK DSD+E+EEQD+Q KEKG +SNKKKKL RR
Sbjct: 113 FEKFNFTEAAATEENDTKDESAQNAESKKKVDSDSEEEEQDNQQKEKGGISNKKKKLLRR 172

Query: 162 MKIAELKQICSRPDVVEVWDATASDPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIEK 221
           MKIAELKQICSRPDVVEVWDATA+DPKLLVFLK+YRNTVPVPRHWCQKRKFLQGKRGIEK
Sbjct: 173 MKIAELKQICSRPDVVEVWDATAADPKLLVFLKSYRNTVPVPRHWCQKRKFLQGKRGIEK 232

Query: 222 QPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQ 281
           QPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQ
Sbjct: 233 QPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQ 292

Query: 282 TKPKLTSHGDLYHEGKEFEVKLREMKPGILSHDLKEALGMPDGAPPPWLINMQRYGPPPS 341
           TKPKLT+HGDLYHEGKEFEVKLREMKPG LS +LKE+LGMP+GAPPPWLINMQRYGPPPS
Sbjct: 293 TKPKLTTHGDLYHEGKEFEVKLREMKPGTLSQELKESLGMPEGAPPPWLINMQRYGPPPS 352

Query: 342 YPHLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGIHQQEQPNYEEEPVDK 401
           YPHLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFG++QQEQPNYEEEPVDK
Sbjct: 353 YPHLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGVYQQEQPNYEEEPVDK 412

Query: 402 SKHWGDLEEEEEEEEEEEEEEQIEEEELEDGIQSVDTLSSTPTGVETPDVIDLRKQQRKE 461
           +KHWGDLEEEEEEEEEEEEEE  EEE+LEDGIQSVD+LSSTPTGVETPDVIDLRKQQRKE
Sbjct: 413 NKHWGDLEEEEEEEEEEEEEEI-EEEDLEDGIQSVDSLSSTPTGVETPDVIDLRKQQRKE 471

Query: 462 PERPLYQVLEEKEERIAPGTLLGTTHTYVVNTGTQDKAGAKRVRM 506
           PERPLYQVLEEK E I  GTLLGTTHTYVV TGTQDK+ AKRV +
Sbjct: 472 PERPLYQVLEEKPEAIGAGTLLGTTHTYVVGTGTQDKSAAKRVDL 516

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549367|ref|XP_003543065.1| PREDICTED: splicing factor 3B subunit 2-like [Glycine max]

 Score =  751 bits (1939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/509 (77%), Positives = 446/509 (87%), Gaps = 11/509 (2%)

Query: 1   MTADTLTQQNGLFVPDGDLISKNPNSISVTTNKETERRRRRRKQKKNKKASQQATLTDSN 60
           M A+T+  QNG+     D       S +         RRRRR+++K    + +A + +S+
Sbjct: 1   MAAETIPYQNGVVASSND-------STATGKKSRENDRRRRRRKQKKNNKASEAPVPNSS 53

Query: 61  NDADNETEDEDSQSQVAEKVTVEYVPEKADLDDGLDDEFRKIFEKFSFHDAAGSEDIDKR 120
            ++D+  E+ DS+ Q+ E++ +EYVPEKA+L +G+D+EFRKIFEKF+F DA   ED DK+
Sbjct: 54  EESDDAKENNDSK-QLVEQIEIEYVPEKAELVEGMDEEFRKIFEKFTFTDATALEDTDKK 112

Query: 121 DESAQNAESKKKADSDTEDEEQDSQPKEKGLSNKKKKLQRRMKIAELKQICSRPDVVEVW 180
           D S +NA + KKA+SD+E+EE D++ KEKG+SNKKKKLQRRMKIAELKQIC RPDVVEVW
Sbjct: 113 DGSEENAATNKKANSDSEEEENDNEQKEKGISNKKKKLQRRMKIAELKQICLRPDVVEVW 172

Query: 181 DATASDPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQ 240
           DATASDPKLLVFLK+YRNTVPVPRHWCQKRKFLQGKRGIEK PFQLPDFIAATGIEKIRQ
Sbjct: 173 DATASDPKLLVFLKSYRNTVPVPRHWCQKRKFLQGKRGIEKPPFQLPDFIAATGIEKIRQ 232

Query: 241 AYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSHGDLYHEGKEFE 300
           AYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTS GDLYHEGKEFE
Sbjct: 233 AYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSLGDLYHEGKEFE 292

Query: 301 VKLREMKPGILSHDLKEALGMPDGAPPPWLINMQRYGPPPSYPHLKIPGLNAPIPPGASF 360
           VKLREMKPG+LSH+LKEALGMP+G+PPPWLINMQRYGPPPSYPHLKIPGLNAPIPPGASF
Sbjct: 293 VKLREMKPGMLSHELKEALGMPEGSPPPWLINMQRYGPPPSYPHLKIPGLNAPIPPGASF 352

Query: 361 GYHPGGWGKPPVDEYGRPLYGDVFGIHQQEQPNYEEEPVDKSKHWGDLEEEEEEEEEEEE 420
           GYHPGGWGKPPVDEYGRPLYGDVFG+ QQ+QPNYEEEPVDK+KHWGDLEEEEEEEEEEEE
Sbjct: 353 GYHPGGWGKPPVDEYGRPLYGDVFGVQQQDQPNYEEEPVDKTKHWGDLEEEEEEEEEEEE 412

Query: 421 EEQIEEEELED---GIQSVDTLSSTPTGVETPDVIDLRKQQRKEPERPLYQVLEEKEERI 477
           EE+ EE E E+   GIQSVD+LSSTPTGVETPDVIDLRKQQRKEPERPLYQVLEEKEE+I
Sbjct: 413 EEEEEEMEEEELEAGIQSVDSLSSTPTGVETPDVIDLRKQQRKEPERPLYQVLEEKEEKI 472

Query: 478 APGTLLGTTHTYVVNTGTQDKAGAKRVRM 506
           APGTLLGTTHTYVV TGTQDK+GAKRV +
Sbjct: 473 APGTLLGTTHTYVVGTGTQDKSGAKRVDL 501

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555130|ref|XP_003545890.1| PREDICTED: splicing factor 3B subunit 2-like [Glycine max]

 Score =  748 bits (1932), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/509 (79%), Positives = 458/509 (89%), Gaps = 11/509 (2%)

Query: 1   MTADTLTQQNGLFVPDGDLISKNPNSISVTTNKETERRRRRRKQKKNKKASQQATLTDSN 60
           M A+T+  QNG+      + + N +S +V  ++E++RRRRRRKQKK+ KAS+ A + +S 
Sbjct: 1   MAAETIPYQNGV------VANSNDSSAAVKKSRESDRRRRRRKQKKSNKASE-APVPNSA 53

Query: 61  NDADNETEDEDSQSQVAEKVTVEYVPEKADLDDGLDDEFRKIFEKFSFHDAAGSEDIDKR 120
            ++D+  E++DS+ Q+ E++ +EYVPEKA+L +G+D+EFRKIFEKF+F DA   ED DK+
Sbjct: 54  EESDDAKENDDSK-QLVEQIEIEYVPEKAELVEGMDEEFRKIFEKFTFTDATALEDTDKK 112

Query: 121 DESAQNAESKKKADSDTEDEEQDSQPKEKGLSNKKKKLQRRMKIAELKQICSRPDVVEVW 180
           D S +NA + KKADSD+E+EE D++ KEKG+SNKKKKLQRRMKIA+LKQICSRPDVVEVW
Sbjct: 113 DGSEENAATNKKADSDSEEEENDNEQKEKGISNKKKKLQRRMKIAQLKQICSRPDVVEVW 172

Query: 181 DATASDPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQ 240
           DATASDPKLLVFLK+YRNTVPVPRHWCQKRKFLQGKRGIEK  FQLPDFIAATGIEKIRQ
Sbjct: 173 DATASDPKLLVFLKSYRNTVPVPRHWCQKRKFLQGKRGIEKPAFQLPDFIAATGIEKIRQ 232

Query: 241 AYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSHGDLYHEGKEFE 300
           AYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTS GDLYHEGKEFE
Sbjct: 233 AYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSLGDLYHEGKEFE 292

Query: 301 VKLREMKPGILSHDLKEALGMPDGAPPPWLINMQRYGPPPSYPHLKIPGLNAPIPPGASF 360
           VKLREMKPG+LS +LKEALGMP+GAPPPWLINMQRYGPPPSYPHLKIPGLNAPIPPGASF
Sbjct: 293 VKLREMKPGMLSQELKEALGMPEGAPPPWLINMQRYGPPPSYPHLKIPGLNAPIPPGASF 352

Query: 361 GYHPGGWGKPPVDEYGRPLYGDVFGIHQQEQPNYEEEPVDKSKHWGDLEEEEEEEEEEEE 420
           GYHPGGWGKPPVDEYGRPLYGDVFG+ QQ+QPNYEEEPVDK+KHWGDLEEEEEEEEEEEE
Sbjct: 353 GYHPGGWGKPPVDEYGRPLYGDVFGVQQQDQPNYEEEPVDKTKHWGDLEEEEEEEEEEEE 412

Query: 421 EEQIEEEELED---GIQSVDTLSSTPTGVETPDVIDLRKQQRKEPERPLYQVLEEKEERI 477
           EE+ EE E E+   GIQSVD+LSSTPTGVETPDVIDLRKQQRKEPERPLYQVLEEKEE+I
Sbjct: 413 EEEEEEMEEEELEAGIQSVDSLSSTPTGVETPDVIDLRKQQRKEPERPLYQVLEEKEEKI 472

Query: 478 APGTLLGTTHTYVVNTGTQDKAGAKRVRM 506
           APGTLLGTTHTYVV TGTQDK+GAKRV +
Sbjct: 473 APGTLLGTTHTYVVGTGTQDKSGAKRVDL 501

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470216|ref|XP_004152814.1| PREDICTED: splicing factor 3B subunit 2-like [Cucumis sativus] gi|449515207|ref|XP_004164641.1| PREDICTED: splicing factor 3B subunit 2-like [Cucumis sativus]

 Score =  748 bits (1931), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/509 (79%), Positives = 464/509 (91%), Gaps = 6/509 (1%)

Query: 1   MTADTLTQQNGLFVPDGDL-ISKNPNSISVTTNKETERRRRRRKQKKNKKASQ--QATLT 57
           MT + ++Q NG+ V +GDL ++ NP S +V  ++E ERRRRRRKQKKN+KAS+  +A   
Sbjct: 1   MTVE-VSQPNGV-VSNGDLDLNSNPKSGAVKKSRENERRRRRRKQKKNQKASKVKEAAGG 58

Query: 58  DSNNDADNETEDEDSQSQVAEKVTVEYVPEKADLDDGLDDEFRKIFEKFSFHDAAGSEDI 117
           + ++ + ++T++ D   QV EKV +EY+PEKA+LDD LD++FRK+FEKFSF + AG+E+ 
Sbjct: 59  EDSDASGDDTKENDDPLQVVEKVEIEYIPEKAELDDSLDEDFRKVFEKFSFSEVAGAEEN 118

Query: 118 DKRDESAQNAESKKKADSDTEDEEQDSQPKEKGLSNKKKKLQRRMKIAELKQICSRPDVV 177
           + +DESAQNA + KK+DSD++DEE D+Q KEKGLSNKKKKLQRRMKIAELKQICSRPDVV
Sbjct: 119 EDKDESAQNA-TSKKSDSDSDDEEHDNQQKEKGLSNKKKKLQRRMKIAELKQICSRPDVV 177

Query: 178 EVWDATASDPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEK 237
           E+WDATA+DPKLLV+LK+YRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEK
Sbjct: 178 EIWDATAADPKLLVYLKSYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEK 237

Query: 238 IRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSHGDLYHEGK 297
           IRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLT+ GDLY+EGK
Sbjct: 238 IRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTTLGDLYYEGK 297

Query: 298 EFEVKLREMKPGILSHDLKEALGMPDGAPPPWLINMQRYGPPPSYPHLKIPGLNAPIPPG 357
           EFEVKLREMKPG+LS +LKEALGMP+GAPPPWLINMQRYGPPPSYP LKIPGLNAPIPPG
Sbjct: 298 EFEVKLREMKPGMLSQELKEALGMPEGAPPPWLINMQRYGPPPSYPDLKIPGLNAPIPPG 357

Query: 358 ASFGYHPGGWGKPPVDEYGRPLYGDVFGIHQQEQPNYEEEPVDKSKHWGDLEEEEEEEEE 417
           ASFGYHPGGWGKPPVDEYGRPLYGDVFG+ QQEQ NYEEEPVDK+KHWGDLEEEEEEE E
Sbjct: 358 ASFGYHPGGWGKPPVDEYGRPLYGDVFGVQQQEQANYEEEPVDKTKHWGDLEEEEEEEVE 417

Query: 418 EEEEEQIEEEELEDGIQSVDTLSSTPTGVETPDVIDLRKQQRKEPERPLYQVLEEKEERI 477
           EE+EE++EEEE+EDGI+SVD+ SSTPTGVETPDVIDLRKQQRKEP+RPLYQVLEEKEER+
Sbjct: 418 EEDEEELEEEEMEDGIESVDSQSSTPTGVETPDVIDLRKQQRKEPDRPLYQVLEEKEERV 477

Query: 478 APGTLLGTTHTYVVNTGTQDKAGAKRVRM 506
           APGTLLGT+HTYV++ GTQDK GAKRV +
Sbjct: 478 APGTLLGTSHTYVISGGTQDKTGAKRVDL 506

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357446557|ref|XP_003593554.1| Splicing factor 3B subunit [Medicago truncatula] gi|355482602|gb|AES63805.1| Splicing factor 3B subunit [Medicago truncatula]

 Score =  736 bits (1901), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/515 (76%), Positives = 437/515 (84%), Gaps = 26/515 (5%)

Query: 1   MTADTLTQQNGLFVPDGDLISKNPNSISVTTNKETERRRRRRKQKKNKKASQQATLTDSN 60
           M A+T   QNG               +    +KE +RRRRR K KKN KAS+Q   ++  
Sbjct: 1   MAAETFPYQNG---------------VVAKKSKENDRRRRRGKAKKNNKASEQPA-SNIG 44

Query: 61  NDADNETEDEDSQSQVAEKVTVEYVPEKADLDDGLDDEFRKIFEKFSFHDAAGSEDIDKR 120
            ++DN  E+ D + QV E+V +EYVPEK DL +G+D+EFRKIFEKFSF + A SE+ DK+
Sbjct: 45  EESDNAKENTDPK-QVFEQVEIEYVPEKVDLYEGMDEEFRKIFEKFSFTEVAASEETDKK 103

Query: 121 DESAQNAESKKKA--DSDTEDEEQDSQPKEKGLSNKKKKLQRRMKIAELKQICSRPDVVE 178
           D + + A +KKKA  DSD EDEE D++ KEKG+SNKKKKLQRRMKIAELKQ+ SRPDVVE
Sbjct: 104 DVAEETAATKKKANSDSDYEDEENDNEQKEKGVSNKKKKLQRRMKIAELKQVSSRPDVVE 163

Query: 179 VWDATASDPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKI 238
           VWDATA+DPKLLVFLK+YRNTVPVPRHW QKRKFLQGKRGIEKQPFQLPDFIAATGIEKI
Sbjct: 164 VWDATAADPKLLVFLKSYRNTVPVPRHWSQKRKFLQGKRGIEKQPFQLPDFIAATGIEKI 223

Query: 239 RQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSHGDLYHEGKE 298
           RQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTS G+LYHEGKE
Sbjct: 224 RQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSLGELYHEGKE 283

Query: 299 FEVKLREMKPGILSHDLKEALGMPDGAPPPWLINMQRYGPPPSYPHLKIPGLNAPIPPGA 358
           FEVKLREMKPG+LSHDLKEALGMP+GAPPPWLINMQRYGPPPSYP LKIPGLNAPIP GA
Sbjct: 284 FEVKLREMKPGMLSHDLKEALGMPEGAPPPWLINMQRYGPPPSYPQLKIPGLNAPIPAGA 343

Query: 359 SFGYHPGGWGKPPVDEYGRPLYGDVFGIHQQEQPNYEEEPVDKSKHWGDLEEEEEEEEEE 418
           SFGYHPGGWGKPPVDEYGRPLYGDVFG+ QQ+QPNYEEEPVDK+KHWGDLEEEEEEEEEE
Sbjct: 344 SFGYHPGGWGKPPVDEYGRPLYGDVFGVQQQDQPNYEEEPVDKTKHWGDLEEEEEEEEEE 403

Query: 419 EEEEQIEEEE-----LEDGIQSVDTLSSTPTGVETPDVIDLRKQQR-KEPERPLYQVLEE 472
           EEEE+ EEE       EDG++SVD+LSSTPTGVETPDVIDLRKQQR KEPERPLYQVLEE
Sbjct: 404 EEEEEEEEEGMEEEYFEDGVKSVDSLSSTPTGVETPDVIDLRKQQRNKEPERPLYQVLEE 463

Query: 473 KEERIAPGTLLGTTHTYVVNT-GTQDKAGAKRVRM 506
           KEE+I  G+LL   HTYVV T GTQDK+GAKRV +
Sbjct: 464 KEEKIGAGSLLVPGHTYVVGTGGTQDKSGAKRVDL 498

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113969|ref|XP_002316630.1| predicted protein [Populus trichocarpa] gi|222859695|gb|EEE97242.1| predicted protein [Populus trichocarpa]

 Score =  731 bits (1886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/517 (77%), Positives = 447/517 (86%), Gaps = 14/517 (2%)

Query: 1   MTADTLTQQNGLFVPDGDLISKNPNSISVTTNKETERRRRRRKQKKNKKASQQATLTDS- 59
           MT +TL  QN + V +GDL S NPNS   +   E  RRRR++K+ K++     A   D  
Sbjct: 1   MTVETLPYQNHV-VSNGDLASTNPNSTKKSKESERRRRRRKQKKNKSQAPDASAAAADGD 59

Query: 60  -----NNDADNETEDEDSQSQVAEKVTVEYVPEKADLDDGLDDEFRKIFEKFSFHDAAGS 114
                N D  +  E+ D Q QV E+V +EYVPEKA+L+DG+D EFR +FEKF+F  +AGS
Sbjct: 60  DSDAANGDGGDAKENADPQ-QVMEQVVIEYVPEKAELEDGMD-EFRNVFEKFNFLQSAGS 117

Query: 115 EDIDKRDESAQNAESKKKADSDTEDEEQDSQPKE-KGLSNKKKKLQRRMKIAELKQICSR 173
           E+ DK+DES QNA++KKK DSD++ EE++   ++ KG+SNKKKKLQRRMKIA+LKQICSR
Sbjct: 118 EENDKKDESIQNADAKKKTDSDSDSEEEEDNEQKEKGVSNKKKKLQRRMKIADLKQICSR 177

Query: 174 PDVVEVWDATASDPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAAT 233
           PDVVEVWDAT++DPKLLVFLK+YRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAAT
Sbjct: 178 PDVVEVWDATSADPKLLVFLKSYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAAT 237

Query: 234 GIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSHGDLY 293
           GIEKIRQAYIEKED KKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLT HGDLY
Sbjct: 238 GIEKIRQAYIEKEDGKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTMHGDLY 297

Query: 294 HEGKEFEVKLREMKPGILSHDLKEALGMPDGAPPPWLINMQRYGPPPSYPHLKIPGLNAP 353
           HEGKEFEVKLREMKPG LS +LKEALGMP+GAPPPWLINMQRYGPPPSYPHLKIPGLNAP
Sbjct: 298 HEGKEFEVKLREMKPGSLSQELKEALGMPEGAPPPWLINMQRYGPPPSYPHLKIPGLNAP 357

Query: 354 IPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGIHQQEQPNYEEEPVDKSKHWG----DLE 409
           IPPGASFGYH GGWGKPPVDEYGRPLYGDVFG+  Q+QPNYEEEPVDK+KHWG    + E
Sbjct: 358 IPPGASFGYHAGGWGKPPVDEYGRPLYGDVFGVQIQDQPNYEEEPVDKTKHWGDLEEEEE 417

Query: 410 EEEEEEEEEEEEEQIEEEELEDGIQSVDTLSSTPTGVETPDVIDLRKQQRKEPERPLYQV 469
           EEEEEEEEEEEEEQ++EEELEDG+QSVD+LSSTPTGVETPDVIDLRKQQRKEPERPLYQV
Sbjct: 418 EEEEEEEEEEEEEQLDEEELEDGVQSVDSLSSTPTGVETPDVIDLRKQQRKEPERPLYQV 477

Query: 470 LEEKEERIAPGTLLGTTHTYVVNTGTQDKAGAKRVRM 506
           LEEK+ERIA GTLLGTTHTYVVNTG+QDK  AKRV +
Sbjct: 478 LEEKQERIAAGTLLGTTHTYVVNTGSQDKTAAKRVDL 514

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357446559|ref|XP_003593555.1| Splicing factor 3B subunit [Medicago truncatula] gi|355482603|gb|AES63806.1| Splicing factor 3B subunit [Medicago truncatula]

 Score =  717 bits (1851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/442 (83%), Positives = 401/442 (90%), Gaps = 9/442 (2%)

Query: 74  SQVAEKVTVEYVPEKADLDDGLDDEFRKIFEKFSFHDAAGSEDIDKRDESAQNAESKKKA 133
           + V E+V +EYVPEK DL +G+D+EFRKIFEKFSF + A SE+ DK+D + + A +KKKA
Sbjct: 2   TSVFEQVEIEYVPEKVDLYEGMDEEFRKIFEKFSFTEVAASEETDKKDVAEETAATKKKA 61

Query: 134 --DSDTEDEEQDSQPKEKGLSNKKKKLQRRMKIAELKQICSRPDVVEVWDATASDPKLLV 191
             DSD EDEE D++ KEKG+SNKKKKLQRRMKIAELKQ+ SRPDVVEVWDATA+DPKLLV
Sbjct: 62  NSDSDYEDEENDNEQKEKGVSNKKKKLQRRMKIAELKQVSSRPDVVEVWDATAADPKLLV 121

Query: 192 FLKAYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKL 251
           FLK+YRNTVPVPRHW QKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKL
Sbjct: 122 FLKSYRNTVPVPRHWSQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKL 181

Query: 252 KQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSHGDLYHEGKEFEVKLREMKPGIL 311
           KQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTS G+LYHEGKEFEVKLREMKPG+L
Sbjct: 182 KQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSLGELYHEGKEFEVKLREMKPGML 241

Query: 312 SHDLKEALGMPDGAPPPWLINMQRYGPPPSYPHLKIPGLNAPIPPGASFGYHPGGWGKPP 371
           SHDLKEALGMP+GAPPPWLINMQRYGPPPSYP LKIPGLNAPIP GASFGYHPGGWGKPP
Sbjct: 242 SHDLKEALGMPEGAPPPWLINMQRYGPPPSYPQLKIPGLNAPIPAGASFGYHPGGWGKPP 301

Query: 372 VDEYGRPLYGDVFGIHQQEQPNYEEEPVDKSKHWGDLEEEEEEEEEEEEEEQIEEEE--- 428
           VDEYGRPLYGDVFG+ QQ+QPNYEEEPVDK+KHWGDLEEEEEEEEEEEEEE+ EEE    
Sbjct: 302 VDEYGRPLYGDVFGVQQQDQPNYEEEPVDKTKHWGDLEEEEEEEEEEEEEEEEEEEGMEE 361

Query: 429 --LEDGIQSVDTLSSTPTGVETPDVIDLRKQQR-KEPERPLYQVLEEKEERIAPGTLLGT 485
              EDG++SVD+LSSTPTGVETPDVIDLRKQQR KEPERPLYQVLEEKEE+I  G+LL  
Sbjct: 362 EYFEDGVKSVDSLSSTPTGVETPDVIDLRKQQRNKEPERPLYQVLEEKEEKIGAGSLLVP 421

Query: 486 THTYVVNT-GTQDKAGAKRVRM 506
            HTYVV T GTQDK+GAKRV +
Sbjct: 422 GHTYVVGTGGTQDKSGAKRVDL 443

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799902|ref|XP_002867835.1| hypothetical protein ARALYDRAFT_914502 [Arabidopsis lyrata subsp. lyrata] gi|297313671|gb|EFH44094.1| hypothetical protein ARALYDRAFT_914502 [Arabidopsis lyrata subsp. lyrata]

 Score =  714 bits (1843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/510 (73%), Positives = 440/510 (86%), Gaps = 5/510 (0%)

Query: 1   MTADTLTQQNGLFVPDGDLISKNPNSISVTTNKETERRRRRRKQKKNKKASQQATLTDSN 60
           MTAD+        V +GD+ + N  + S   ++E++RRRRRRKQKKN KASQ    T   
Sbjct: 1   MTADSTVAHVNSVVSNGDVSNGN-TTASSKKSRESDRRRRRRKQKKNNKASQADVDTSDV 59

Query: 61  NDADNETEDEDSQSQVAEKVTVEYVPEKADLDDGLDDEFRKIFEKFSFHDAAGSEDIDKR 120
           + A +  E+ D Q QV+E++ +EYVPE+A+ +DG +DEF++IFEKF+F +   SE+  K+
Sbjct: 60  SGASDSKENADPQQQVSEQIVIEYVPEQAEFEDGFNDEFKEIFEKFNFREPVTSEEDGKK 119

Query: 121 DESAQNAESKKKADSDT--EDEEQDSQPKEKGLSNKKKKLQRRMKIAELKQICSRPDVVE 178
           DES    + KKK +SD+  +++E+D+Q KEKG+SNKKKKLQRRMKIAELKQ+ +RPDVVE
Sbjct: 120 DESEDKEDVKKKVNSDSGSDEDERDNQNKEKGISNKKKKLQRRMKIAELKQVSARPDVVE 179

Query: 179 VWDATASDPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKI 238
           VWDAT++DPKLLVFLK+YRNTVPVPRHW QKRK+LQGKRGIEKQPF LPDFIAATGIEKI
Sbjct: 180 VWDATSADPKLLVFLKSYRNTVPVPRHWSQKRKYLQGKRGIEKQPFHLPDFIAATGIEKI 239

Query: 239 RQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSHGDLYHEGKE 298
           RQAYIEKED KKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKL++ GDLY EGKE
Sbjct: 240 RQAYIEKEDGKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLSALGDLYFEGKE 299

Query: 299 FEVKLREMKPGILSHDLKEALGMPDGAPPPWLINMQRYGPPPSYPHLKIPGLNAPIPPGA 358
           FEVKLRE KPGILSHDLKEALGMP+GAPPPWLINMQRYGPPPSYPHLKIPGLNAPIP GA
Sbjct: 300 FEVKLRETKPGILSHDLKEALGMPEGAPPPWLINMQRYGPPPSYPHLKIPGLNAPIPLGA 359

Query: 359 SFGYHPGGWGKPPVDEYGRPLYGDVFGIHQQEQPNYEEEPVDKSKHWG--DLEEEEEEEE 416
           SFGYH GGWGKPPVDEYGRPLYGDVFG+ QQ+QPNYEEEP+DKSKHWG  + EEEEEEEE
Sbjct: 360 SFGYHIGGWGKPPVDEYGRPLYGDVFGVQQQDQPNYEEEPIDKSKHWGDLEEEEEEEEEE 419

Query: 417 EEEEEEQIEEEELEDGIQSVDTLSSTPTGVETPDVIDLRKQQRKEPERPLYQVLEEKEER 476
           EEE+EE++++E+L+DG +SVDTLSSTPTG+ETPD I+LRK+QRKEP+RPLYQVLEEK E 
Sbjct: 420 EEEQEEEMDDEDLQDGTESVDTLSSTPTGIETPDAIELRKEQRKEPDRPLYQVLEEKGES 479

Query: 477 IAPGTLLGTTHTYVVNTGTQDKAGAKRVRM 506
           +APGT+LGTTHTYV+ TGTQDK GAKRV +
Sbjct: 480 VAPGTVLGTTHTYVIKTGTQDKTGAKRVDL 509

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	531
ZFIN|ZDB-GENE-070928-1	826	sf3b2 "splicing factor 3b, sub	0.717	0.461	0.515	4.4e-100
UNIPROTKB|F1MC31	896	SF3B2 "Uncharacterized protein	0.723	0.428	0.508	5.6e-100
UNIPROTKB|E9PPJ0	878	SF3B2 "Splicing factor 3B subu	0.723	0.437	0.508	5.6e-100
UNIPROTKB|Q13435	895	SF3B2 "Splicing factor 3B subu	0.723	0.429	0.508	5.6e-100
UNIPROTKB|F1RU38	879	SF3B2 "Uncharacterized protein	0.723	0.436	0.508	7.1e-100
FB|FBgn0031493	749	CG3605 [Drosophila melanogaste	0.717	0.508	0.507	1.2e-99
UNIPROTKB|E2RL65	895	SF3B2 "Uncharacterized protein	0.723	0.429	0.506	1.5e-99
DICTYBASE|DDB_G0284555	625	sf3b2 "splicing factor 3B subu	0.581	0.494	0.506	2e-96
ASPGD|ASPL0000031751	549	AN5098 [Emericella nidulans (t	0.531	0.513	0.562	1.9e-89
POMBASE|SPAC22F8.10c	601	sap145 "U2 snRNP-associated pr	0.589	0.520	0.515	5e-89

ZFIN|ZDB-GENE-070928-1 sf3b2 "splicing factor 3b, subunit 2" [Danio rerio (taxid:7955)]

 Score = 993 (354.6 bits), Expect = 4.4e-100, P = 4.4e-100
 Identities = 210/407 (51%), Positives = 260/407 (63%)

Query:    79 KVTVEYVPEKADLDDGLDDEFRKIFEKFSFHDAAGSEDIDKRDESAQNAES---KKKAXX 135
             +V +EYV E+  + D     F++IFE F   D    E  +K  E  +  E    KKK   
Sbjct:   297 EVEIEYVTEEPAIYDPNFIFFKRIFEAFKLTDDVKKEK-EKEPEKPEKPEILSFKKKGFE 355

Query:   136 XXXXXXXXXXPXXXXXX--XXXXXLQR--RMKIAELKQICSRPDVVEVWDATASDPKLLV 191
                                     L+R  R+ +AELKQ+ +RPDVVE+ D TA +PKLLV
Sbjct:   356 LEKRDSDDSDEEIKKDLPKLSKKKLRRMNRLTVAELKQLVARPDVVEMHDVTAQEPKLLV 415

Query:   192 FLKAYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKL 251
              LKA RNTVPVPRHWC KRK+LQGKRGIEK PF+LP+FI  TGI+++R+A  EKED+K +
Sbjct:   416 HLKATRNTVPVPRHWCFKRKYLQGKRGIEKPPFELPEFIRRTGIQEMREALQEKEDAKTM 475

Query:   252 KQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSHGDLYHEGKEFEVKLREMKPGIL 311
             K K RE+++PKMGK+DIDYQ LHDAFFK+Q KPKLT HGDLY+EGKEFE +L+E KPG L
Sbjct:   476 KTKMREKVRPKMGKIDIDYQKLHDAFFKWQIKPKLTIHGDLYYEGKEFETRLKEKKPGDL 535

Query:   312 SHDLKEALGMPDG-----APPPWLINMQRYGPPPSYPHLKIPGLNAPIPPGASFGYHPGG 366
             S +L+ ALGMP G      PPPWLI MQRYGPPPSYP+LKIPGLNAPIP G SFGYH GG
Sbjct:   536 SDELRVALGMPTGPNSHKVPPPWLIAMQRYGPPPSYPNLKIPGLNAPIPEGCSFGYHAGG 595

Query:   367 WGKPPVDEYGRPLYGDVFGIHQQE-QPNYEEEPVDKSKHWGDLXXXXXXXXXXXXXXXXX 425
             WGKPPVDE G+PLYGDVFG +  + Q   EEE VD++  WG+L                 
Sbjct:   596 WGKPPVDETGKPLYGDVFGTNSIDFQAKAEEEEVDRTP-WGELEPSDEESSEEEEEEESD 654

Query:   426 X-----------XXXXDGIQSVDTLSSTPTGVETPDVIDLRKQQRKE 461
                              G+ +    SS P G+ETP++I+LRK++ +E
Sbjct:   655 EEKPDETGFFTPADSHSGLITPGGFSSVPAGMETPELIELRKKKIEE 701

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1MC31 SF3B2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 992 (354.3 bits), Expect = 5.6e-100, P = 5.6e-100
 Identities = 209/411 (50%), Positives = 262/411 (63%)

Query:    77 AEKVTVEYVPEKADLDDGLDDEFRKIFEKFSFHDAAGSE---DIDKRDESAQNAESKKK- 132
             A  V +EYV E+ ++ +     F++IFE F   D    E   + +K D+   +A  KKK 
Sbjct:   365 AADVEIEYVTEEPEIYEPNFIFFKRIFEAFKLTDDVKKEKEKEPEKLDKMENSAVPKKKG 424

Query:   133 -------AXXXXXXXXXXXXPXXXXXXXXXXXLQRRMKIAELKQICSRPDVVEVWDATAS 185
                    +            P              R  +AELKQ+ +RPDVVE+ D TA 
Sbjct:   425 FEEEHKDSDDDSSDDEQEKKPEAPKLSKKKLRRMNRFTVAELKQLVARPDVVEMHDVTAQ 484

Query:   186 DPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEK 245
             DPKLLV LKA RN+VPVPRHWC KRK+LQGKRGIEK PF+LPDFI  TGI+++R+A  EK
Sbjct:   485 DPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFELPDFIKRTGIQEMREALQEK 544

Query:   246 EDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSHGDLYHEGKEFEVKLRE 305
             E+ K +K K RE+++PKMGK+DIDYQ LHDAFFK+QTKPKLT HGDLY+EGKEFE +L+E
Sbjct:   545 EEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPKLTIHGDLYYEGKEFETRLKE 604

Query:   306 MKPGILSHDLKEALGMPDG-----APPPWLINMQRYGPPPSYPHLKIPGLNAPIPPGASF 360
              KPG LS +L+ +LGMP G      PPPWLI MQRYGPPPSYP+LKIPGLN+PIP   SF
Sbjct:   605 KKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPPSYPNLKIPGLNSPIPESCSF 664

Query:   361 GYHPGGWGKPPVDEYGRPLYGDVFGIHQQE-QPNYEEEPVDKSKHWGDLXXXXXXXXXXX 419
             GYH GGWGKPPVDE G+PLYGDVFG +  E Q   EEE +D++  WG+L           
Sbjct:   665 GYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEIDRTP-WGELEPSDEESSEEE 723

Query:   420 XXXXXXXXXXXD-G-IQSVDT-------LSSTPTGVETPDVIDLRKQQRKE 461
                        + G I   D+        SS P G+ETP++I+LRK++ +E
Sbjct:   724 EEEESDEDKPDETGFITPADSGLITPGGFSSVPAGMETPELIELRKKKIEE 774

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0005689 "U12-type spliceosomal complex" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E9PPJ0 SF3B2 "Splicing factor 3B subunit 2" [Homo sapiens (taxid:9606)]

 Score = 992 (354.3 bits), Expect = 5.6e-100, P = 5.6e-100
 Identities = 209/411 (50%), Positives = 262/411 (63%)

Query:    77 AEKVTVEYVPEKADLDDGLDDEFRKIFEKFSFHDAAGSE---DIDKRDESAQNAESKKK- 132
             A  V +EYV E+ ++ +     F++IFE F   D    E   + +K D+   +A  KKK 
Sbjct:   347 AADVEIEYVTEEPEIYEPNFIFFKRIFEAFKLTDDVKKEKEKEPEKLDKLENSAAPKKKG 406

Query:   133 -------AXXXXXXXXXXXXPXXXXXXXXXXXLQRRMKIAELKQICSRPDVVEVWDATAS 185
                    +            P              R  +AELKQ+ +RPDVVE+ D TA 
Sbjct:   407 FEEEHKDSDDDSSDDEQEKKPEAPKLSKKKLRRMNRFTVAELKQLVARPDVVEMHDVTAQ 466

Query:   186 DPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEK 245
             DPKLLV LKA RN+VPVPRHWC KRK+LQGKRGIEK PF+LPDFI  TGI+++R+A  EK
Sbjct:   467 DPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFELPDFIKRTGIQEMREALQEK 526

Query:   246 EDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSHGDLYHEGKEFEVKLRE 305
             E+ K +K K RE+++PKMGK+DIDYQ LHDAFFK+QTKPKLT HGDLY+EGKEFE +L+E
Sbjct:   527 EEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPKLTIHGDLYYEGKEFETRLKE 586

Query:   306 MKPGILSHDLKEALGMPDG-----APPPWLINMQRYGPPPSYPHLKIPGLNAPIPPGASF 360
              KPG LS +L+ +LGMP G      PPPWLI MQRYGPPPSYP+LKIPGLN+PIP   SF
Sbjct:   587 KKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPPSYPNLKIPGLNSPIPESCSF 646

Query:   361 GYHPGGWGKPPVDEYGRPLYGDVFGIHQQE-QPNYEEEPVDKSKHWGDLXXXXXXXXXXX 419
             GYH GGWGKPPVDE G+PLYGDVFG +  E Q   EEE +D++  WG+L           
Sbjct:   647 GYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEIDRTP-WGELEPSDEESSEEE 705

Query:   420 XXXXXXXXXXXD-G-IQSVDT-------LSSTPTGVETPDVIDLRKQQRKE 461
                        + G I   D+        SS P G+ETP++I+LRK++ +E
Sbjct:   706 EEEESDEDKPDETGFITPADSGLITPGGFSSVPAGMETPELIELRKKKIEE 756

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|Q13435 SF3B2 "Splicing factor 3B subunit 2" [Homo sapiens (taxid:9606)]

 Score = 992 (354.3 bits), Expect = 5.6e-100, P = 5.6e-100
 Identities = 209/411 (50%), Positives = 262/411 (63%)

Query:    77 AEKVTVEYVPEKADLDDGLDDEFRKIFEKFSFHDAAGSE---DIDKRDESAQNAESKKK- 132
             A  V +EYV E+ ++ +     F++IFE F   D    E   + +K D+   +A  KKK 
Sbjct:   364 AADVEIEYVTEEPEIYEPNFIFFKRIFEAFKLTDDVKKEKEKEPEKLDKLENSAAPKKKG 423

Query:   133 -------AXXXXXXXXXXXXPXXXXXXXXXXXLQRRMKIAELKQICSRPDVVEVWDATAS 185
                    +            P              R  +AELKQ+ +RPDVVE+ D TA 
Sbjct:   424 FEEEHKDSDDDSSDDEQEKKPEAPKLSKKKLRRMNRFTVAELKQLVARPDVVEMHDVTAQ 483

Query:   186 DPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEK 245
             DPKLLV LKA RN+VPVPRHWC KRK+LQGKRGIEK PF+LPDFI  TGI+++R+A  EK
Sbjct:   484 DPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFELPDFIKRTGIQEMREALQEK 543

Query:   246 EDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSHGDLYHEGKEFEVKLRE 305
             E+ K +K K RE+++PKMGK+DIDYQ LHDAFFK+QTKPKLT HGDLY+EGKEFE +L+E
Sbjct:   544 EEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPKLTIHGDLYYEGKEFETRLKE 603

Query:   306 MKPGILSHDLKEALGMPDG-----APPPWLINMQRYGPPPSYPHLKIPGLNAPIPPGASF 360
              KPG LS +L+ +LGMP G      PPPWLI MQRYGPPPSYP+LKIPGLN+PIP   SF
Sbjct:   604 KKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPPSYPNLKIPGLNSPIPESCSF 663

Query:   361 GYHPGGWGKPPVDEYGRPLYGDVFGIHQQE-QPNYEEEPVDKSKHWGDLXXXXXXXXXXX 419
             GYH GGWGKPPVDE G+PLYGDVFG +  E Q   EEE +D++  WG+L           
Sbjct:   664 GYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEIDRTP-WGELEPSDEESSEEE 722

Query:   420 XXXXXXXXXXXD-G-IQSVDT-------LSSTPTGVETPDVIDLRKQQRKE 461
                        + G I   D+        SS P G+ETP++I+LRK++ +E
Sbjct:   723 EEEESDEDKPDETGFITPADSGLITPGGFSSVPAGMETPELIELRKKKIEE 773

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0005689 "U12-type spliceosomal complex" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS

GO:0006397 "mRNA processing" evidence=TAS

GO:0005681 "spliceosomal complex" evidence=IDA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0008380 "RNA splicing" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|F1RU38 SF3B2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 991 (353.9 bits), Expect = 7.1e-100, P = 7.1e-100
 Identities = 209/411 (50%), Positives = 262/411 (63%)

Query:    77 AEKVTVEYVPEKADLDDGLDDEFRKIFEKFSFHDAAGSE---DIDKRDESAQNAESKKK- 132
             A  V +EYV E+ ++ +     F++IFE F   D    E   + +K D+   +A  KKK 
Sbjct:   348 AADVEIEYVTEEPEIYEPNFIFFKRIFEAFKLTDDVKKEKEKEPEKLDKLENSAVPKKKG 407

Query:   133 -------AXXXXXXXXXXXXPXXXXXXXXXXXLQRRMKIAELKQICSRPDVVEVWDATAS 185
                    +            P              R  +AELKQ+ +RPDVVE+ D TA 
Sbjct:   408 FEEEHKDSDDDSSDDEQEKKPEAPKLSKKKLRRMNRFTVAELKQLVARPDVVEMHDVTAQ 467

Query:   186 DPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEK 245
             DPKLLV LKA RN+VPVPRHWC KRK+LQGKRGIEK PF+LPDFI  TGI+++R+A  EK
Sbjct:   468 DPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFELPDFIKRTGIQEMREALQEK 527

Query:   246 EDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSHGDLYHEGKEFEVKLRE 305
             E+ K +K K RE+++PKMGK+DIDYQ LHDAFFK+QTKPKLT HGDLY+EGKEFE +L+E
Sbjct:   528 EEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPKLTIHGDLYYEGKEFETRLKE 587

Query:   306 MKPGILSHDLKEALGMPDG-----APPPWLINMQRYGPPPSYPHLKIPGLNAPIPPGASF 360
              KPG LS +L+ +LGMP G      PPPWLI MQRYGPPPSYP+LKIPGLN+PIP   SF
Sbjct:   588 KKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPPSYPNLKIPGLNSPIPESCSF 647

Query:   361 GYHPGGWGKPPVDEYGRPLYGDVFGIHQQE-QPNYEEEPVDKSKHWGDLXXXXXXXXXXX 419
             GYH GGWGKPPVDE G+PLYGDVFG +  E Q   EEE +D++  WG+L           
Sbjct:   648 GYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEIDRTP-WGELEPSDEESSEEE 706

Query:   420 XXXXXXXXXXXD-G-IQSVDT-------LSSTPTGVETPDVIDLRKQQRKE 461
                        + G I   D+        SS P G+ETP++I+LRK++ +E
Sbjct:   707 EEEESDEDKPDETGFITPADSGLITPGGFSSVPAGMETPELIELRKKKIEE 757

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0005689 "U12-type spliceosomal complex" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

FB|FBgn0031493 CG3605 [Drosophila melanogaster (taxid:7227)]

 Score = 989 (353.2 bits), Expect = 1.2e-99, P = 1.2e-99
 Identities = 205/404 (50%), Positives = 254/404 (62%)

Query:    78 EKVTVEYVPEKADLDD--GLDDEFRKIFEKFSFHDAAGSEDIDKRDESAQNAESKKKAXX 135
             E VT+EYVPEK  + D   +  +F ++FE F   +     + DK    +++    KKA  
Sbjct:   217 ENVTIEYVPEKITIADLAPMYRQFYRVFEIFKLENKPKPVEKDKSSHDSESHPRDKKATD 276

Query:   136 XXXXXXXXXXPXXXXXXXXXXXLQRR-------MKIAELKQICSRPDVVEVWDATASDPK 188
                                   L +R       + +AELKQ+ SRPDVVE+ D TA DPK
Sbjct:   277 KQLEDEDDDGDDDEERKEDKEKLSKRKLKKLTRLSVAELKQLVSRPDVVEMHDVTARDPK 336

Query:   189 LLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDS 248
             LLV LKAYRNTV VPRHWC KRK+LQGKRGIEK PF LP FI  TGI ++R++  E+ED+
Sbjct:   337 LLVQLKAYRNTVQVPRHWCFKRKYLQGKRGIEKPPFDLPAFIKKTGIMEMRESLQEREDA 396

Query:   249 KKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSHGDLYHEGKEFEVKLREMKP 308
             K LK K RER++PKMGK+DIDYQ LHDAFFK+QTKP++T HGDLY+EGKEFE +L+E KP
Sbjct:   397 KTLKAKMRERVRPKMGKIDIDYQKLHDAFFKWQTKPRMTIHGDLYYEGKEFETRLKEKKP 456

Query:   309 GILSHDLKEALGMPDGA-----PPPWLINMQRYGPPPSYPHLKIPGLNAPIPPGASFGYH 363
             G LS +L+ ALGMP G      PPPWLI  QRYGPPPSYP+LKIPGLNAPIP G SFGYH
Sbjct:   457 GDLSEELRIALGMPVGPNSHKIPPPWLIAQQRYGPPPSYPNLKIPGLNAPIPDGTSFGYH 516

Query:   364 PGGWGKPPVDEYGRPLYGDVFGIHQQEQPNYEEEPVDKSKHWGDLXXXXXXXXXXXXXXX 423
              GGWGKPPVDE G+PLYGDVFG +  +  N  +E   +   WG+L               
Sbjct:   517 AGGWGKPPVDENGKPLYGDVFGTNILDLDNGVDEADIERNQWGELESESEESSEEEEEDG 576

Query:   424 XXXXXXXD---------GIQSVDTLSSTPTGVETPDVIDLRKQQ 458
                    D         G+ +   L+S P G+ETP+ I+LRK++
Sbjct:   577 EDLGDQQDETGLVTPVEGLVTPSGLTSVPAGMETPENIELRKKK 620

GO:0005681 "spliceosomal complex" evidence=ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS

GO:0005686 "U2 snRNP" evidence=ISS

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0071011 "precatalytic spliceosome" evidence=IDA

UNIPROTKB|E2RL65 SF3B2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 988 (352.9 bits), Expect = 1.5e-99, P = 1.5e-99
 Identities = 208/411 (50%), Positives = 261/411 (63%)

Query:    77 AEKVTVEYVPEKADLDDGLDDEFRKIFEKFSFHDAAGSE---DIDKRDESAQNAESKKK- 132
             A  V +EYV E+ ++ +     F++IFE F   D    E   + +K D+   +   KKK 
Sbjct:   364 AADVEIEYVTEEPEIYEPNFIFFKRIFEAFKLTDDVKKEKEKEPEKLDKLENSTAPKKKG 423

Query:   133 -------AXXXXXXXXXXXXPXXXXXXXXXXXLQRRMKIAELKQICSRPDVVEVWDATAS 185
                    +            P              R  +AELKQ+ +RPDVVE+ D TA 
Sbjct:   424 FEEEHKDSDDDSSDDEQEKKPEAPKLSKKKLRRMNRFTVAELKQLVARPDVVEMHDVTAQ 483

Query:   186 DPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEK 245
             DPKLLV LKA RN+VPVPRHWC KRK+LQGKRGIEK PF+LPDFI  TGI+++R+A  EK
Sbjct:   484 DPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFELPDFIKRTGIQEMREALQEK 543

Query:   246 EDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSHGDLYHEGKEFEVKLRE 305
             E+ K +K K RE+++PKMGK+DIDYQ LHDAFFK+QTKPKLT HGDLY+EGKEFE +L+E
Sbjct:   544 EEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPKLTIHGDLYYEGKEFETRLKE 603

Query:   306 MKPGILSHDLKEALGMPDG-----APPPWLINMQRYGPPPSYPHLKIPGLNAPIPPGASF 360
              KPG LS +L+ +LGMP G      PPPWLI MQRYGPPPSYP+LKIPGLN+PIP   SF
Sbjct:   604 KKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPPSYPNLKIPGLNSPIPESCSF 663

Query:   361 GYHPGGWGKPPVDEYGRPLYGDVFGIHQQE-QPNYEEEPVDKSKHWGDLXXXXXXXXXXX 419
             GYH GGWGKPPVDE G+PLYGDVFG +  E Q   EEE +D++  WG+L           
Sbjct:   664 GYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEIDRTP-WGELEPSDEESSEEE 722

Query:   420 XXXXXXXXXXXD-G-IQSVDT-------LSSTPTGVETPDVIDLRKQQRKE 461
                        + G I   D+        SS P G+ETP++I+LRK++ +E
Sbjct:   723 EEEESDEDKPDETGFITPADSGLITPGGFSSVPAGMETPELIELRKKKIEE 773

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0005689 "U12-type spliceosomal complex" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

DICTYBASE|DDB_G0284555 sf3b2 "splicing factor 3B subunit 2" [Dictyostelium discoideum (taxid:44689)]

 Score = 863 (308.9 bits), Expect = 2.0e-96, Sum P(2) = 2.0e-96
 Identities = 164/324 (50%), Positives = 221/324 (68%)

Query:   159 QRRMKIAELKQICSRPDVVEVWDATASDPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRG 218
             QR++ +  LKQ+  RPDVVE+ D  + +P  L+ +K+YRNT+PVP HWCQK+K+LQGKRG
Sbjct:   177 QRKLHLPILKQLVDRPDVVELHDVNSPNPGYLIAMKSYRNTIPVPAHWCQKKKYLQGKRG 236

Query:   219 IEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFF 278
               K PF+LP FIAATGI KIR+A +EKE   K KQKQRER+QPK+ KM IDY+VL DAFF
Sbjct:   237 FVKPPFELPSFIAATGITKIREAILEKEKEMKSKQKQRERVQPKIRKMGIDYEVLRDAFF 296

Query:   279 KYQTKPKLTSHGDLYHEGKEFEVKLREMKPGILSHDLKEALGMPDGAPPPWLINMQRYGP 338
              +QTKP L+  GDLY+EGKEFEV L+  KPG+LS +LK ALGM +G PPPWLI MQ YGP
Sbjct:   297 VHQTKPNLSIQGDLYYEGKEFEVNLKNKKPGVLSDELKRALGMIEGYPPPWLIYMQTYGP 356

Query:   339 PPSYPHLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGIHQQEQPNYEEEP 398
             PPSYP+LKIPG+N+PIP GA +G+HPGGWG+P ++E+G+PLY +V   +     N +++ 
Sbjct:   357 PPSYPNLKIPGVNSPIPEGAQYGFHPGGWGRPVLNEFGKPLYENVNNNNNNINNNGDQQQ 416

Query:   399 VDKSKH-----WGDLXXXXXXXXXXXXXXXXXXXXXXDGIQ--------SV-DTLSSTPT 444
               +  H     WG+L                      D +Q        S+ D +SS P+
Sbjct:   417 QQQQSHPTREYWGELLPESEDFQEEEEQQEQQGTEE-DELQQHQLEDDESIGDGISSVPS 475

Query:   445 GVETPDVIDLRKQQRKEPERPLYQ 468
             G+ETPD+++++K +  + ++   Q
Sbjct:   476 GLETPDIVNIKKSRYDQQQQQQQQ 499

GO:0005634 "nucleus" evidence=IEA

GO:0008380 "RNA splicing" evidence=ISS

GO:0005681 "spliceosomal complex" evidence=ISS

GO:0003723 "RNA binding" evidence=ISS

ASPGD|ASPL0000031751 AN5098 [Emericella nidulans (taxid:162425)]

 Score = 874 (312.7 bits), Expect = 1.9e-89, Sum P(2) = 1.9e-89
 Identities = 163/290 (56%), Positives = 209/290 (72%)

Query:   161 RMKIAELKQICSRPDVVEVWDATASDPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIE 220
             ++ +AELK +  +P++VE  D +A DP+LLV +KA+RN VPVP HW  KR++L  KRGIE
Sbjct:   116 KLSVAELKAMVKKPELVEWTDTSAPDPRLLVHIKAHRNVVPVPSHWSLKREYLSSKRGIE 175

Query:   221 KQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKY 280
             K PF LP FI  TGI ++R A +EK++   LKQKQRER+QPKMG++DIDYQ L++AFF++
Sbjct:   176 KAPFSLPKFIQETGIAEMRDAALEKQEQATLKQKQRERVQPKMGRLDIDYQKLYEAFFRF 235

Query:   281 QTKPKLTSHGDLYHEGKEFEVKLREMKPGILSHDLKEALGMPDGAPPPWLINMQRYGPPP 340
             QTKP+LT +G++Y+EGKEFE   R ++PG LS +LKEAL MP GAPPPWLIN QRYGPPP
Sbjct:   236 QTKPELTRYGEVYYEGKEFETNQRHLRPGELSSELKEALNMPPGAPPPWLINQQRYGPPP 295

Query:   341 SYPHLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYG-DVFGIHQQEQPNYEEEPV 399
             SYP LKIPGLNAP PPGA +GYHPGG+GKPPVDE+ RPLYG D+FG+ Q +Q   + EPV
Sbjct:   296 SYPALKIPGLNAPPPPGAMWGYHPGGYGKPPVDEHNRPLYGGDIFGVLQPQQTMQQGEPV 355

Query:   400 DKSKHWGDLXXXXXXXXXXXXXXXXXXXXXXDGIQSVDTLSSTPTGVETP 449
             +K   WG+L                         + VD    TP+G+E+P
Sbjct:   356 EKDL-WGELQEPELSDEDSEDEEEELDE------EDVDAGLQTPSGMESP 398

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0006397 "mRNA processing" evidence=IEA

POMBASE|SPAC22F8.10c sap145 "U2 snRNP-associated protein Sap145 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 842 (301.5 bits), Expect = 5.0e-89, Sum P(2) = 5.0e-89
 Identities = 165/320 (51%), Positives = 209/320 (65%)

Query:    90 DLDDGLDDEFRKIFEKFSFHDAAGSE-DIDKRDESAQNAESKKKAXXXXXXXXXXXXPXX 148
             D +D L ++F+ +F +F    A G E D +  D+  Q   S  +                
Sbjct:   119 DPNDPLIEQFKDVFNRFK---ADGQEKDFEDTDKG-QIMYSDDEILSEGEEDALQKQQEE 174

Query:   149 XXXXXXXXXLQRRMKIAELKQICSRPDVVEVWDATASDPKLLVFLKAYRNTVPVPRHWCQ 208
                      L +RM +A+LK +  + DVVE WD ++ DP  L  LKAY NTVPVPRHW Q
Sbjct:   175 KLSKKKLRKL-KRMTVAQLKMLSEKADVVEWWDVSSLDPLFLTHLKAYPNTVPVPRHWNQ 233

Query:   209 KRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDI 268
             KR +L G+RGIE+Q F+LP +I ATGI ++R A  E E    L+QK RER+QPKMGK+DI
Sbjct:   234 KRDYLSGQRGIERQLFELPSYIRATGIVQMRNAVHENEADMPLRQKMRERVQPKMGKLDI 293

Query:   269 DYQVLHDAFFKYQTKPKLTSHGDLYHEGKEFEVKLREMKPGILSHDLKEALGMPDGAPPP 328
             DYQ LHDAFF+YQTKP LT  G+ Y EGKE E  ++E +PG +S +L+EALG+  GAPPP
Sbjct:   294 DYQKLHDAFFRYQTKPVLTGFGECYFEGKELEADVKEKRPGDISEELREALGIAPGAPPP 353

Query:   329 WLINMQRYGPPPSYPHLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGIHQ 388
             WL  MQRYGPPPSYP LKIPG+N PIP GA +G+HPGGWGKPPVD++ RPLYGDVFG  +
Sbjct:   354 WLFAMQRYGPPPSYPDLKIPGVNCPIPTGAQWGFHPGGWGKPPVDQFNRPLYGDVFGNVK 413

Query:   389 QEQPNYEEEPVDKSKHWGDL 408
                      PV  ++HWG+L
Sbjct:   414 PRIHAGTGSPVS-TQHWGEL 432

GO:0000245 "spliceosomal complex assembly" evidence=ISS

GO:0003723 "RNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0005681 "spliceosomal complex" evidence=IDA

GO:0005686 "U2 snRNP" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00010279001	SubName- Full=Chromosome undetermined scaffold_252, whole genome shotgun sequence; (561 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00029524001	SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (1201 aa)				•	•	•	•		0.960
	GSVIVG00023361001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (522 aa)				•	•	•	•		0.956
	GSVIVG00024968001	SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (373 aa)				•	•	•	•		0.943
	GSVIVG00020286001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (109 aa)						•			0.895
	GSVIVG00017245001	SubName- Full=Putative uncharacterized protein (Chromosome chr6 scaffold_15, whole genome shotg [...] (125 aa)						•	•		0.872
	GSVIVG00025837001	SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (1007 aa)				•	•	•	•		0.862
	GSVIVG00028128001	SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (771 aa)						•			0.800
	GSVIVG00028826001	SubName- Full=Chromosome chr1 scaffold_46, whole genome shotgun sequence; (563 aa)				•	•	•	•		0.787
	GSVIVG00002219001	SubName- Full=Chromosome chr14 scaffold_128, whole genome shotgun sequence; (1012 aa)				•	•		•		0.761
	GSVIVG00000599001	SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (357 aa)					•	•	•		0.713

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	531
COG5182	429	COG5182, CUS1, Splicing factor 3b, subunit 2 [RNA	6e-85
pfam04037	129	pfam04037, DUF382, Domain of unknown function (DUF	3e-79
pfam04046	48	pfam04046, PSP, PSP	2e-25
smart00581	54	smart00581, PSP, proline-rich domain in spliceosom	6e-24
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	6e-05
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	0.004

>gnl|CDD|227509 COG5182, CUS1, Splicing factor 3b, subunit 2 [RNA processing and modification]

 Score =  269 bits (688), Expect = 6e-85
 Identities = 133/462 (28%), Positives = 209/462 (45%), Gaps = 58/462 (12%)

Query: 22  KNPNSISVTTNKETERRRRRRKQKKNKKASQQATLTDSNNDADNETEDEDSQSQVAEKVT 81
            N N  +   N + E       ++  +K     T +    +   + + E     V ++  
Sbjct: 12  NNQNKNASVVNNKAEIAAMIDARRLEQKKKGGVTNSKGKTNKVVDAKLEKEFKDVLQRFQ 71

Query: 82  VEYVPEKADLDDGLDDEFRKIFEKFSFHDAAGSEDIDKRDESAQNAESKKKADSDTEDEE 141
           V         +D   +  +                   R +S +      +A+ D E   
Sbjct: 72  V-------QENDTPKEITKDEKNMS-------------RMKSRKAPTIHMEAEIDDEYGF 111

Query: 142 QDSQPKEKGLSNKKKKLQR--RMKIAELKQICSRPDVVEVWDATASDPKLLVFLKAYRNT 199
           +D     +  S  ++K ++  + +  +LK +   P++ E  DAT  DP  L  +K   N 
Sbjct: 112 EDRMKPYREESLSRQKKRKALQHRYEQLKLVVPYPEIFEWEDATCPDPMSLNRMKGCSNG 171

Query: 200 VPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERM 259
           VPVPRHW  K ++L G    + +PF+LP  I  TGI ++R+   E+E    L+++ RER+
Sbjct: 172 VPVPRHWRSKSRYLSGHGYHKPRPFELPRHIIGTGIPQMRRMMREREAGMSLRERIRERV 231

Query: 260 QPKMGKMDIDYQVLHDAFFKYQTKPKLTSHGDLYHEGKEFEVKLREMKPGILSHDLKEAL 319
           QPKMG +D+DY+ LHDAFF    KP L+  G+ Y E       +++ +PG +S +L+EAL
Sbjct: 232 QPKMGGLDVDYRKLHDAFFSLGPKPYLSKFGEFYEEVDNDYRFVKKKRPGAISAELREAL 291

Query: 320 GMPDGAPPPWLINMQRYGPPPSYPHLKIPGLNAPIPP--GASFGYHPGGWGKPPVDEYGR 377
           G+  G PPPWL NMQ++G PPSYP LKIPGLN    P  G  +GY P GW +P  +    
Sbjct: 292 GIDSGTPPPWLFNMQKHGMPPSYPDLKIPGLNWAPIPLEGDVYGYQPPGWHEPLFEVGPE 351

Query: 378 PLYGDVFGIHQQEQPNYEEEPVDKSKHWGDLEEEEEEEEEEEEEEQIEE-EELEDGIQSV 436
                                       G+L + E EE   +EE+      E ED  + V
Sbjct: 352 -------------------------TAEGELLQFEAEEIYNDEEQYTRPVYENEDFEERV 386

Query: 437 DTLSSTPTGVETPDVIDLR--------KQQRKEPERPLYQVL 470
           D +S+       P  +++         K+ + + E+ LY VL
Sbjct: 387 DDVSNGGLAEFAPAAVEVAPKEDAKVTKRGKAKREKLLYSVL 428

Length = 429

>gnl|CDD|112836 pfam04037, DUF382, Domain of unknown function (DUF382)

 Score =  243 bits (623), Expect = 3e-79
 Identities = 95/129 (73%), Positives = 108/129 (83%)

Query: 171 CSRPDVVEVWDATASDPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFI 230
             RP++VE WD TA DP LLV LK+ RNTVPVPRHW QKRK+L GKRGIEK PF+LPDFI
Sbjct: 1   VPRPELVEWWDVTAPDPYLLVALKSQRNTVPVPRHWSQKRKYLSGKRGIEKPPFELPDFI 60

Query: 231 AATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSHG 290
            ATGI ++R A +EKE  K LKQKQRER+QPKMGK+DIDYQ LHDAFFKYQTKP LT +G
Sbjct: 61  EATGIAEMRDALLEKEAEKTLKQKQRERVQPKMGKLDIDYQKLHDAFFKYQTKPDLTKYG 120

Query: 291 DLYHEGKEF 299
           D+Y+EGKEF
Sbjct: 121 DVYYEGKEF 129

This domain is specific to the human splicing factor 3b subunit 2 and it's orthologues. Splicing factor 3b subunit 2 or SAP145 is a suppressor of U2 snRNA mutations. Pre-mRNA splicing is catalyzed by a large ribonucleoprotein complex called the spliceosome. Spliceosomes are multi-component enzymes that catalyze pre-mRNA splicing and form step-wise by the ordered interaction of UsnRNPs and non-snRNP proteins with short conserved regions of the pre-mRNA at the 5' and 3' splice sites and branch site. Length = 129

>gnl|CDD|202864 pfam04046, PSP, PSP

 Score = 98.4 bits (246), Expect = 2e-25
 Identities = 36/48 (75%), Positives = 41/48 (85%)

Query: 307 KPGILSHDLKEALGMPDGAPPPWLINMQRYGPPPSYPHLKIPGLNAPI 354
           KPG+LS +L+EALGMP+G PPPWL  M+R G PPSYP LKIPGLNAPI
Sbjct: 1   KPGVLSDELREALGMPEGDPPPWLYRMRRLGYPPSYPDLKIPGLNAPI 48

Proline rich domain found in numerous spliceosome associated proteins. Length = 48

>gnl|CDD|128850 smart00581, PSP, proline-rich domain in spliceosome associated proteins

 Score = 94.3 bits (235), Expect = 6e-24
 Identities = 34/54 (62%), Positives = 40/54 (74%)

Query: 303 LREMKPGILSHDLKEALGMPDGAPPPWLINMQRYGPPPSYPHLKIPGLNAPIPP 356
            +  KPG +S +L+EALG+P G PPPWL  M+R G PP YP LKIPGLNAPIP 
Sbjct: 1   FKHFKPGRISDELREALGLPPGQPPPWLYRMRRLGYPPGYPRLKIPGLNAPIPL 54

Length = 54

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 45.8 bits (108), Expect = 6e-05
 Identities = 23/35 (65%), Positives = 28/35 (80%)

Query: 406 GDLEEEEEEEEEEEEEEQIEEEELEDGIQSVDTLS 440
           GD EEEEEEEEEEEEEE+ EEEE E+  ++ + LS
Sbjct: 861 GDSEEEEEEEEEEEEEEEEEEEEEEEEEENEEPLS 895

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 40.0 bits (93), Expect = 0.004
 Identities = 19/29 (65%), Positives = 23/29 (79%)

Query: 409 EEEEEEEEEEEEEEQIEEEELEDGIQSVD 437
           EEEEEEEEEEEEEE+ EEEE  +   S++
Sbjct: 869 EEEEEEEEEEEEEEEEEEEEENEEPLSLE 897

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	531
KOG2330	500	consensus Splicing factor 3b, subunit 2 [RNA proce	100.0
COG5182	429	CUS1 Splicing factor 3b, subunit 2 [RNA processing	100.0
PF04037	129	DUF382: Domain of unknown function (DUF382) ; Inte	100.0
smart00581	54	PSP proline-rich domain in spliceosome associated	99.93
PF04046	48	PSP: PSP; InterPro: IPR006568 PSP is a proline-ric	99.9
KOG2673	485	consensus Uncharacterized conserved protein, conta	98.58

>KOG2330 consensus Splicing factor 3b, subunit 2 [RNA processing and modification]

Probab=100.00  E-value=1.8e-148  Score=1139.29  Aligned_cols=412  Identities=56%  Similarity=0.962  Sum_probs=352.5

Q ss_pred             ccceeEEeeCCCCCCCchhHHHHHHHHhhccCCccCCCccccchhhhhhhh--hhcc-c--CCCCCchhhccCCccccCC
Q 009600           77 AEKVTVEYVPEKADLDDGLDDEFRKIFEKFSFHDAAGSEDIDKRDESAQNA--ESKK-K--ADSDTEDEEQDSQPKEKGL  151 (531)
Q Consensus        77 ~~~v~iEyv~e~~~~~d~~~~~F~~VF~kF~~~~~~~~e~~~~~~~~~~~~--~~~~-~--~~~d~~dee~~~~~~~~~l  151 (531)
                      ..+|+|+||.+.++++     +| +||++|+..+.....  ..........  ..+. .  ...|+ +++..++..+.+|
T Consensus        46 ~~~~~~~~v~e~~ei~-----~f-~vf~~Fk~~~~~~~~--~e~~~~~~~~e~~~~~~~~~~~ed~-~ed~~~~~~eekl  116 (500)
T KOG2330|consen   46 DKGVTIEYVDEKIEIE-----FF-DVFERFKLQEMSEKK--FEKPDHVSISEKDDEKGFVHEAEDE-DEDMKDDRIEEKL  116 (500)
T ss_pred             cCCceEeeecchhhhH-----HH-HHHHHHhcccccccc--cccCCcceeeccCcccccccccchh-hhccccccchhhh
Confidence            3579999999998776     66 999999988732211  1111111111  1111 0  11111 1111222356789


Q ss_pred             ChHHHHHhhcCCHHHHHhhcCCCceEEeecCCCCChHHHHHHHhcCCCccCCccccccccccccccCCCCCCCCccHHHH
Q 009600          152 SNKKKKLQRRMKIAELKQICSRPDVVEVWDATASDPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIA  231 (531)
Q Consensus       152 Skkk~k~~~r~svaeLK~~v~~PevVE~~D~tA~DP~lLv~lKs~rNtVPVP~HW~~KR~YLsgkrgieK~pf~LP~fI~  231 (531)
                      |+||+|++.|+|||+||++|.||+|||||||||.||+|||+||+|+|+||||+|||+||+||||+||||||||+||+||+
T Consensus       117 skrklRk~~r~svaeLK~~v~~pdvvE~~Dvta~dP~ll~~lK~~~n~VPVPrHW~~kr~yl~G~rg~ekppfelP~~Ik  196 (500)
T KOG2330|consen  117 SKRKLRKLLRPSVAELKQLVPYPDVVEWHDVTARDPKLLVHLKAYRNSVPVPRHWNSKRKYLSGKRGIEKPPFELPDFIK  196 (500)
T ss_pred             hHHHHHHhhcccHHHHhhcCCccceeeeeccCCCChHHHHHhhhccCCCcCchhhhhhhhhhccccccCCCCccchHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhChHHHHHHHHhhhhhHHHHHHHHhhhCCCCCccccchHHHHHHhhcccCCCCCCCCCcccccchhHHHhhhcCCCCCC
Q 009600          232 ATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSHGDLYHEGKEFEVKLREMKPGIL  311 (531)
Q Consensus       232 ~TGI~emR~a~~eke~~~sLKqk~RervqPKmGklDIDYqkLhDAFFk~qtKP~Lt~~GDlYYEGKe~e~~~~~~kPG~L  311 (531)
                      .|||++||++++|+|+.+|||+|||||||||||+|||||||||||||||||||.||.|||||||||||+..+++++||.|
T Consensus       197 ~TgI~emR~a~~e~e~~~sLk~kmRerv~PkmGkidiDyqkLhdaFFk~qtkp~lt~~Ge~yyegke~e~~~k~k~PG~i  276 (500)
T KOG2330|consen  197 KTGIQEMREALLEREAGKSLKEKMRERVRPKMGKIDIDYQKLHDAFFKWQTKPYLTKFGELYYEGKELEAMVKEKKPGDI  276 (500)
T ss_pred             hcCHHHHHHHHHhhhccccHHHHHHHhhCcccccccchHHHHHHHHHhcCCCcceeecceeeecchhHHHHHhhcCccch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHhCCCCCCCchHHHHHHhcCCCCCCCCCcccccCCCCCCCCCCCccCCCCCCCCCCCCCCcccccccccccCCC
Q 009600          312 SHDLKEALGMPDGAPPPWLINMQRYGPPPSYPHLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGIHQQEQ  391 (531)
Q Consensus       312 S~eLR~ALGm~~~~pPPWl~~MQr~GpPPSYP~LkIpGLNapiP~g~~~Gyh~ggwGkppvde~g~PLyGdvfG~~~~~~  391 (531)
                      |++||+||||++++||||||+|||||||||||+|||||||||||+||+||||+||||  |||++|+||||||||...++.
T Consensus       277 S~eLr~aLgmp~g~pPPWl~aMqryGpPpsYPdlkIpGLNapIPeg~s~Gyh~gGWG--pVDe~g~PLygDVfG~~~p~~  354 (500)
T KOG2330|consen  277 SDELRIALGMPVGTPPPWLIAMQRYGPPPSYPDLKIPGLNAPIPEGCSFGYHAGGWG--PVDEFGKPLYGDVFGLNIPEH  354 (500)
T ss_pred             hHHHHHHhCCCCCCCChHHHHhhhcCCCCCCCcccCCCCCCCCCcccccccccCCCc--cccccCCccchhccccccccc
Confidence            999999999999999999999999999999999999999999999999999999999  999999999999999998876


Q ss_pred             CCCCCCCC-cccCccccCCcchhhhhhhhhhhh-hhhhhh--------ccCcccccCccccCCCCCCCcccccccccCCC
Q 009600          392 PNYEEEPV-DKSKHWGDLEEEEEEEEEEEEEEQ-IEEEEL--------EDGIQSVDTLSSTPTGVETPDVIDLRKQQRKE  461 (531)
Q Consensus       392 ~~~~~e~v-dk~~~WGele~eeeeeeeeeeeee-~~e~~~--------~~g~~~~sg~ss~~~g~etp~~~dlRK~~~~~  461 (531)
                      .+...+.+ ++ .+||+|+++++|++||.+||| .+.++.        ...+.++++++++|+|+|||+.|+|||..+.+
T Consensus       355 ~~~t~es~~~r-n~wgel~~e~~E~~EEreeee~~d~~~~~e~gg~~dp~d~~~~~~Lts~ptgiEtpd~iELRK~k~ee  433 (500)
T KOG2330|consen  355 HNGTKESEIER-NHWGELESEEEESSEEREEEEREDKNDASENGGAVDPADDIVPSGLTSFPTGIETPDAIELRKKKREE  433 (500)
T ss_pred             ccccccccccc-ccccccccccchhhhhhhhhhhhhhhhhhhccccCCccccccccccccCCccccChhHHHHHhhcccc
Confidence            65544444 45 599999986555544422222 111111        11256789999999999999999999999988


Q ss_pred             CCCCCceeccccccccCCCcccccccEEEcCCCccCCCC
Q 009600          462 PERPLYQVLEEKEERIAPGTLLGTTHTYVVNTGTQDKAG  500 (531)
Q Consensus       462 ~~k~LYtVl~Ek~~~~~~~~~~gS~~~Ydl~~~~~~~~g  500 (531)
                      +.+.|||||+||.++..+|+||||+|+|||+++++.+.+
T Consensus       434 ~~r~LYqVLpEK~t~~igg~mmgstH~Ydis~~~a~k~~  472 (500)
T KOG2330|consen  434 ETRALYQVLPEKRTSRIGGTMMGSTHTYDISTGTADKTP  472 (500)
T ss_pred             ccHHHHHhccccccccccceeeccceEEeccccccccCC
Confidence            889999999999999778889999999999999888766

>COG5182 CUS1 Splicing factor 3b, subunit 2 [RNA processing and modification]

Probab=100.00  E-value=3e-96  Score=738.17  Aligned_cols=248  Identities=44%  Similarity=0.780  Sum_probs=231.2

Q ss_pred             CccccCCChHHHHHhhcCCHHHHHhhcCCCceEEeecCCCCChHHHHHHHhcCCCccCCccccccccccccccCCCCCCC
Q 009600          145 QPKEKGLSNKKKKLQRRMKIAELKQICSRPDVVEVWDATASDPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIEKQPF  224 (531)
Q Consensus       145 ~~~~~~lSkkk~k~~~r~svaeLK~~v~~PevVE~~D~tA~DP~lLv~lKs~rNtVPVP~HW~~KR~YLsgkrgieK~pf  224 (531)
                      ...+..||++|+||..|+++++||.+|.+|+|||||||||+||.||.+||++.|+||||+||++|++||||++++++.||
T Consensus       117 ~~~ee~ls~~k~Rk~~~~~~~qLK~~vpyp~I~Ew~D~~~~dP~~l~~~K~~~N~VPVPrHW~sk~~ylsg~~~~~~r~f  196 (429)
T COG5182         117 PYREESLSRQKKRKALQHRYEQLKLVVPYPEIFEWEDATCPDPMSLNRMKGCSNGVPVPRHWRSKSRYLSGHGYHKPRPF  196 (429)
T ss_pred             ccchhhhHHHHHHHHhhhhHHHHhccCCccceeeeecCCCCChhhhhhhccCCCCCCCchhhhhhhhcccccccCCCCcc
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccHHHHHhChHHHHHHHHhhhhhHHHHHHHHhhhCCCCCccccchHHHHHHhhcccCCCCCCCCCcccccchhHHHhhh
Q 009600          225 QLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSHGDLYHEGKEFEVKLR  304 (531)
Q Consensus       225 ~LP~fI~~TGI~emR~a~~eke~~~sLKqk~RervqPKmGklDIDYqkLhDAFFk~qtKP~Lt~~GDlYYEGKe~e~~~~  304 (531)
                      +||++|+.|||.+||+++.+.|+.|+|++++|+|||||||++||||++||||||++|+||.|+.|||+||||++++...+
T Consensus       197 elP~~I~~TgI~qmR~~~~e~ea~msLre~~RervqPkmG~ldvDy~kLhdaFF~~g~kP~L~~fGe~y~e~~n~~~~vk  276 (429)
T COG5182         197 ELPRHIIGTGIPQMRRMMREREAGMSLRERIRERVQPKMGGLDVDYRKLHDAFFSLGPKPYLSKFGEFYEEVDNDYRFVK  276 (429)
T ss_pred             cchHHHhhcChHHHHHhhhhccccCcHHHHHHHhhCccccccchhHHHHHHHHHhcCCCcccccccceeeccchHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCcHHHHHHhCCCCCCCchHHHHHHhcCCCCCCCCCcccccC-CCCC-CCCCCCccCCCCCCCCCCCCCCccccc
Q 009600          305 EMKPGILSHDLKEALGMPDGAPPPWLINMQRYGPPPSYPHLKIPGLN-APIP-PGASFGYHPGGWGKPPVDEYGRPLYGD  382 (531)
Q Consensus       305 ~~kPG~LS~eLR~ALGm~~~~pPPWl~~MQr~GpPPSYP~LkIpGLN-apiP-~g~~~Gyh~ggwGkppvde~g~PLyGd  382 (531)
                      +++||.||.+||+||||++++|||||++||+||||||||+||||||| ++|| .||.|||.+-||+.|-.          
T Consensus       277 ~krPG~IS~eLrealgi~~g~pPPWlf~Mq~~G~PpsYPDlkIpGlNW~~~pL~GdvyG~~~p~~h~~~~----------  346 (429)
T COG5182         277 KKRPGAISAELREALGIDSGTPPPWLFNMQKHGMPPSYPDLKIPGLNWAPIPLEGDVYGYQPPGWHEPLF----------  346 (429)
T ss_pred             ccCCcchHHHHHHHhCCCCCCCChHHHhhhhcCCCCCCccccCCCCCCCCcccccccccccCCCcCCccC----------
Confidence            99999999999999999999999999999999999999999999999 6777 78888888888876321          


Q ss_pred             ccccccCCCCCCCCCCCcccCccccCCcchhhhhh
Q 009600          383 VFGIHQQEQPNYEEEPVDKSKHWGDLEEEEEEEEE  417 (531)
Q Consensus       383 vfG~~~~~~~~~~~e~vdk~~~WGele~eeeeeee  417 (531)
                                    +++.. .+||+|.+-++++.+
T Consensus       347 --------------~~~~~-~~~gel~~fe~ee~~  366 (429)
T COG5182         347 --------------EVGPE-TAEGELLQFEAEEIY  366 (429)
T ss_pred             --------------CcCcc-hhhhhhhhccchhhc
Confidence                          22333 499999876544433

>PF04037 DUF382: Domain of unknown function (DUF382) ; InterPro: IPR007180 This domain is specific to the human splicing factor 3b subunit 2 and its orthologs

Probab=100.00  E-value=1.2e-73  Score=511.46  Aligned_cols=129  Identities=78%  Similarity=1.221  Sum_probs=128.0

Q ss_pred             cCCCceEEeecCCCCChHHHHHHHhcCCCccCCccccccccccccccCCCCCCCCccHHHHHhChHHHHHHHHhhhhhHH
Q 009600          171 CSRPDVVEVWDATASDPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKK  250 (531)
Q Consensus       171 v~~PevVE~~D~tA~DP~lLv~lKs~rNtVPVP~HW~~KR~YLsgkrgieK~pf~LP~fI~~TGI~emR~a~~eke~~~s  250 (531)
                      |.+|||||||||||+||+|||+|||++||||||+|||+||+|||||||||||||+||+||++|||++||+++.++|+++|
T Consensus         1 V~~PevVE~~D~~a~DP~lLv~lKs~rNtVPVP~HW~~Kr~YL~gkrg~eKppf~LP~~I~~TgI~emR~~~~e~e~~~s   80 (129)
T PF04037_consen    1 VPRPEVVEWHDVTAPDPRLLVHLKSYRNTVPVPRHWSQKRKYLQGKRGIEKPPFQLPDFIKDTGIEEMRQALPEKEDEKS   80 (129)
T ss_pred             CCCCceEEeecCCCCChHHHHHHHhcCCCCCCCcchhhhhhhhcccccccCCCCcCCHHHHHHCcHHHHHHhhcccchhh
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhCCCCCccccchHHHHHHhhcccCCCCCCCCCcccccchhH
Q 009600          251 LKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSHGDLYHEGKEF  299 (531)
Q Consensus       251 LKqk~RervqPKmGklDIDYqkLhDAFFk~qtKP~Lt~~GDlYYEGKe~  299 (531)
                      ||||||||||||||+||||||+||||||+|||||.||+|||||||||||
T Consensus        81 lKqk~RervqPKmGkldIDYq~LhdAFFk~qtKP~l~~~Gd~YyEgkef  129 (129)
T PF04037_consen   81 LKQKQRERVQPKMGKLDIDYQKLHDAFFKFQTKPKLTKFGDLYYEGKEF  129 (129)
T ss_pred             HHHHHHHHhCcccCcccccHHHHHHHHHhccCCCCcccccceeeccccC
Confidence            9999999999999999999999999999999999999999999999997

; GO: 0005634 nucleus

>smart00581 PSP proline-rich domain in spliceosome associated proteins

Probab=99.93  E-value=4.8e-27  Score=184.71  Aligned_cols=54  Identities=63%  Similarity=1.281  Sum_probs=51.9

Q ss_pred             hhcCCCCCCcHHHHHHhCCCCCCCchHHHHHHhcCCCCCCCCCcccccCCCCCC
Q 009600          303 LREMKPGILSHDLKEALGMPDGAPPPWLINMQRYGPPPSYPHLKIPGLNAPIPP  356 (531)
Q Consensus       303 ~~~~kPG~LS~eLR~ALGm~~~~pPPWl~~MQr~GpPPSYP~LkIpGLNapiP~  356 (531)
                      +++++||+||++||+||||++++|||||++||+||+|||||+|+||||||+||.
T Consensus         1 ~~~~kPG~lS~~LR~ALG~~~~~pPPWl~~Mq~~G~PPsYp~l~ipglna~ip~   54 (54)
T smart00581        1 FKHFKPGRISDELREALGLPPGQPPPWLYRMRRLGYPPGYPRLKIPGLNAPIPL   54 (54)
T ss_pred             CCCccCCcCCHHHHHHcCCCCCCCChHHHHHHHHCCCCCCcccccCCCCCCCCC
Confidence            368999999999999999999999999999999999999999999999999983

>PF04046 PSP: PSP; InterPro: IPR006568 PSP is a proline-rich domain of unknown function found in spliceosome associated proteins

Probab=99.90  E-value=3.5e-24  Score=165.13  Aligned_cols=48  Identities=69%  Similarity=1.304  Sum_probs=47.3

Q ss_pred             CCCCCcHHHHHHhCCCCCCCchHHHHHHhcCCCCCCCCCcccccCCCC
Q 009600          307 KPGILSHDLKEALGMPDGAPPPWLINMQRYGPPPSYPHLKIPGLNAPI  354 (531)
Q Consensus       307 kPG~LS~eLR~ALGm~~~~pPPWl~~MQr~GpPPSYP~LkIpGLNapi  354 (531)
                      |||+||++||+||||++++|||||++||++|+|||||+++|||+|++|
T Consensus         1 kPG~lS~~LR~ALg~~~~~~PPwl~~M~~~G~PP~y~~~ki~g~n~~i   48 (48)
T PF04046_consen    1 KPGKLSDELREALGMQENDPPPWLYRMRRLGYPPGYPDLKIPGLNAPI   48 (48)
T ss_pred             CCcccCHHHHHHcCCCCCCCChHHHHHHhcCCCCCCccccccCCCCCC
Confidence            799999999999999999999999999999999999999999999987

>KOG2673 consensus Uncharacterized conserved protein, contains PSP domain [Function unknown]

Probab=98.58  E-value=2.7e-08  Score=105.82  Aligned_cols=51  Identities=39%  Similarity=0.793  Sum_probs=44.3

Q ss_pred             ccccchhHHHhhhcCCCCCCcHHHHHHhCCCCCCCchHHHHHHhcCCCCCCC
Q 009600          292 LYHEGKEFEVKLREMKPGILSHDLKEALGMPDGAPPPWLINMQRYGPPPSYP  343 (531)
Q Consensus       292 lYYEGKe~e~~~~~~kPG~LS~eLR~ALGm~~~~pPPWl~~MQr~GpPPSYP  343 (531)
                      .||---+ ..+..++|||+||..||.|||+.++.||+|+++|.++|.||.|-
T Consensus       167 ry~~~te-q~re~h~KPG~lS~~~R~al~l~~~d~P~~~yRMR~lGYPPg~L  217 (485)
T KOG2673|consen  167 RYYQDTE-QGREDHFKPGVLSGNTRSALGLSPGDPPEWKYRMRRLGYPPGYL  217 (485)
T ss_pred             eeeeecc-hhhhcccCCcccchhHHHhhcCCCCCchHHHHHHhhccCCchhh
Confidence            5665332 22678999999999999999999999999999999999999996

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	531
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 2e-06
 Identities = 65/428 (15%), Positives = 128/428 (29%), Gaps = 119/428 (27%)

Query: 63  ADNETED-EDSQSQVAEKVTVEYVPEKADLDDG-------LDDEFRKIFEKFSFHDAAGS 114
            + + +D +D    +  K  ++++    D   G       L  +  ++ +KF        
Sbjct: 31  DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV------- 83

Query: 115 EDIDKRD----ESAQNAESKKKADSDTEDEEQ------DSQPKEKG-LSNKKKKLQRRMK 163
           E++ + +     S    E ++ +       EQ      D+Q   K  +S  +  L+ R  
Sbjct: 84  EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143

Query: 164 IAELKQICSRPDVVEV---------WDA--TASDPKLLVFLKAYRNTVPVPRHW-----C 207
           + EL+      +V+ +         W A       K+   +            W     C
Sbjct: 144 LLELR---PAKNVL-IDGVLGSGKTWVALDVCLSYKVQCKM-------DFKIFWLNLKNC 192

Query: 208 QKR----KFLQG-KRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPK 262
                  + LQ     I+       D  +     K+R   I+ E  + LK K  E     
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNI---KLRIHSIQAELRRLLKSKPYENC--- 246

Query: 263 MGKMDI-----DYQVLHDAFFKYQTKPKLTSHG----DLYHEGKEFEVKLREMKPGILSH 313
              + +     + +   +AF     K  LT+      D         + L      +   
Sbjct: 247 ---LLVLLNVQNAKAW-NAF-NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 314 DLKE----ALGM-PDGAPP------PWLINM--QRYGPPPS----YPHLKIPGLNAPIPP 356
           ++K      L   P   P       P  +++  +      +    + H+    L   I  
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII-- 359

Query: 357 GASFGYHPGGWGKPPVDEYGRPLYGD--VFGIHQQEQPNYEEEPVDK---SKHWGDLEEE 411
            +S         +P   EY R ++    VF       P      +     S  W D+ + 
Sbjct: 360 ESSLNVL-----EP--AEY-RKMFDRLSVF-------P--PSAHIPTILLSLIWFDVIKS 402

Query: 412 EEEEEEEE 419
           +      +
Sbjct: 403 DVMVVVNK 410

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00